Query 038658
Match_columns 831
No_of_seqs 607 out of 4121
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 13:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.3E-47 1.1E-51 427.5 16.8 291 1-300 374-679 (889)
2 PLN03210 Resistant to P. syrin 100.0 5E-40 1.1E-44 393.8 29.7 266 1-288 406-683 (1153)
3 PLN00113 leucine-rich repeat r 100.0 9.7E-38 2.1E-42 376.1 25.7 531 137-824 69-605 (968)
4 PLN00113 leucine-rich repeat r 100.0 2.9E-37 6.2E-42 372.0 26.6 483 137-736 93-587 (968)
5 KOG0472 Leucine-rich repeat pr 99.9 3.1E-29 6.7E-34 241.8 -15.9 407 186-714 62-474 (565)
6 KOG4194 Membrane glycoprotein 99.9 3.1E-26 6.8E-31 231.3 4.3 362 193-705 79-447 (873)
7 KOG0472 Leucine-rich repeat pr 99.9 8.3E-29 1.8E-33 238.9 -15.4 223 183-425 82-308 (565)
8 KOG0618 Serine/threonine phosp 99.9 1.6E-26 3.5E-31 246.3 -5.5 436 190-766 43-489 (1081)
9 PLN03210 Resistant to P. syrin 99.9 4.7E-23 1E-27 247.9 22.9 199 563-805 703-909 (1153)
10 KOG4194 Membrane glycoprotein 99.9 1.4E-24 3.1E-29 219.5 2.2 280 176-527 86-376 (873)
11 KOG0444 Cytoskeletal regulator 99.9 3.3E-25 7.1E-30 225.5 -5.9 318 137-532 55-378 (1255)
12 KOG0444 Cytoskeletal regulator 99.9 1.1E-24 2.3E-29 221.8 -6.5 113 589-714 265-379 (1255)
13 KOG0618 Serine/threonine phosp 99.9 4.9E-24 1.1E-28 227.6 -6.1 110 156-273 39-148 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 6E-15 1.3E-19 164.3 15.2 78 192-279 201-278 (788)
15 KOG4237 Extracellular matrix p 99.6 8.1E-17 1.7E-21 156.5 -4.7 100 194-294 69-172 (498)
16 PRK15387 E3 ubiquitin-protein 99.5 1.2E-13 2.6E-18 154.1 16.3 196 473-736 222-417 (788)
17 KOG0617 Ras suppressor protein 99.5 1.7E-16 3.6E-21 135.9 -5.6 109 182-291 46-155 (264)
18 KOG0617 Ras suppressor protein 99.5 2.7E-16 5.9E-21 134.6 -4.5 105 186-291 27-132 (264)
19 KOG4658 Apoptotic ATPase [Sign 99.5 2.4E-14 5.3E-19 163.3 8.1 107 190-297 543-653 (889)
20 KOG4237 Extracellular matrix p 99.5 1.5E-15 3.2E-20 147.8 -3.1 109 182-291 80-193 (498)
21 PRK15370 E3 ubiquitin-protein 99.4 5E-13 1.1E-17 150.3 8.7 82 193-282 179-260 (754)
22 PRK15370 E3 ubiquitin-protein 99.3 4.8E-12 1E-16 142.5 9.6 90 192-291 199-288 (754)
23 KOG4341 F-box protein containi 99.1 2.1E-12 4.6E-17 127.3 -6.3 232 473-734 138-386 (483)
24 cd00116 LRR_RI Leucine-rich re 99.0 2.7E-11 5.9E-16 127.1 -4.0 84 190-273 21-119 (319)
25 KOG4341 F-box protein containi 99.0 8.2E-12 1.8E-16 123.2 -7.6 110 392-508 139-255 (483)
26 cd00116 LRR_RI Leucine-rich re 98.9 7.9E-11 1.7E-15 123.6 -3.6 117 157-275 18-150 (319)
27 KOG0532 Leucine-rich repeat (L 98.9 1.5E-10 3.3E-15 118.8 -2.3 180 182-424 88-270 (722)
28 PRK15386 type III secretion pr 98.8 2.6E-08 5.6E-13 102.0 10.4 16 594-609 74-89 (426)
29 PF14580 LRR_9: Leucine-rich r 98.8 4.3E-09 9.2E-14 96.0 4.0 131 156-297 13-151 (175)
30 PRK15386 type III secretion pr 98.8 2E-08 4.4E-13 102.7 8.9 160 624-826 52-213 (426)
31 PF00931 NB-ARC: NB-ARC domain 98.8 7.3E-10 1.6E-14 114.0 -1.6 69 1-69 214-285 (287)
32 COG4886 Leucine-rich repeat (L 98.7 1.2E-08 2.6E-13 110.1 4.7 102 188-291 112-214 (394)
33 KOG0532 Leucine-rich repeat (L 98.7 9.5E-10 2.1E-14 113.0 -4.2 173 190-425 73-245 (722)
34 PF14580 LRR_9: Leucine-rich r 98.6 8E-09 1.7E-13 94.2 1.4 81 190-273 17-99 (175)
35 KOG3207 Beta-tubulin folding c 98.6 2.6E-08 5.5E-13 99.6 2.3 84 190-273 170-257 (505)
36 PF13855 LRR_8: Leucine rich r 98.5 9E-08 2E-12 71.4 4.5 58 192-249 1-60 (61)
37 COG4886 Leucine-rich repeat (L 98.5 1.4E-07 3E-12 101.9 5.8 125 158-291 112-237 (394)
38 PLN03150 hypothetical protein; 98.5 1.8E-07 3.9E-12 105.7 6.1 93 193-285 419-513 (623)
39 PLN03150 hypothetical protein; 98.4 2.6E-07 5.7E-12 104.3 6.7 103 177-279 427-532 (623)
40 KOG1259 Nischarin, modulator o 98.4 2.1E-08 4.6E-13 94.8 -2.2 82 190-273 282-363 (490)
41 KOG3207 Beta-tubulin folding c 98.4 5E-08 1.1E-12 97.6 0.3 153 470-658 118-281 (505)
42 PF13855 LRR_8: Leucine rich r 98.4 2.6E-07 5.6E-12 68.9 3.6 58 215-273 1-60 (61)
43 PF12799 LRR_4: Leucine Rich r 98.2 1.1E-06 2.3E-11 59.5 3.3 38 193-230 2-39 (44)
44 KOG2120 SCF ubiquitin ligase, 98.2 2.1E-08 4.6E-13 94.9 -8.2 110 625-734 211-327 (419)
45 KOG1909 Ran GTPase-activating 98.1 3.3E-07 7.2E-12 89.3 -0.9 255 187-486 25-310 (382)
46 KOG1259 Nischarin, modulator o 98.1 3.1E-07 6.6E-12 87.2 -1.4 77 212-291 281-357 (490)
47 KOG2120 SCF ubiquitin ligase, 98.1 1E-07 2.2E-12 90.4 -5.2 181 564-765 185-375 (419)
48 PF12799 LRR_4: Leucine Rich r 98.1 4.4E-06 9.5E-11 56.6 3.9 39 215-254 1-39 (44)
49 KOG1909 Ran GTPase-activating 98.0 6.2E-07 1.3E-11 87.4 -2.5 247 209-528 24-310 (382)
50 KOG0531 Protein phosphatase 1, 98.0 2.1E-06 4.6E-11 92.7 1.2 102 186-291 89-191 (414)
51 KOG0531 Protein phosphatase 1, 97.8 1.9E-06 4.1E-11 93.1 -2.2 98 190-291 70-167 (414)
52 KOG4579 Leucine-rich repeat (L 97.8 3.5E-06 7.7E-11 70.5 -0.2 94 186-281 47-141 (177)
53 KOG4579 Leucine-rich repeat (L 97.6 5.5E-06 1.2E-10 69.4 -2.9 98 192-291 27-128 (177)
54 KOG1859 Leucine-rich repeat pr 97.4 4.3E-06 9.3E-11 89.3 -6.6 93 185-280 102-226 (1096)
55 KOG1947 Leucine rich repeat pr 97.3 2.3E-05 5.1E-10 87.6 -3.3 237 562-827 186-441 (482)
56 KOG3665 ZYG-1-like serine/thre 97.3 0.00017 3.7E-09 81.4 3.3 110 159-275 145-263 (699)
57 KOG3665 ZYG-1-like serine/thre 97.2 0.00026 5.7E-09 79.9 3.5 137 214-377 121-261 (699)
58 COG5238 RNA1 Ran GTPase-activa 97.2 4.5E-05 9.8E-10 71.9 -2.2 197 188-424 26-252 (388)
59 KOG2982 Uncharacterized conser 97.0 0.0001 2.2E-09 70.5 -1.2 36 213-248 69-107 (418)
60 KOG2982 Uncharacterized conser 97.0 0.00042 9.2E-09 66.5 2.8 84 190-273 69-157 (418)
61 KOG1859 Leucine-rich repeat pr 97.0 9.4E-05 2E-09 79.4 -1.9 80 190-273 185-265 (1096)
62 KOG1947 Leucine rich repeat pr 96.8 8.3E-05 1.8E-09 83.2 -4.2 215 588-827 184-415 (482)
63 KOG1644 U2-associated snRNP A' 96.8 0.0012 2.5E-08 60.0 3.9 98 192-292 42-146 (233)
64 PF00560 LRR_1: Leucine Rich R 96.6 0.00082 1.8E-08 37.6 0.7 19 217-235 2-20 (22)
65 KOG2739 Leucine-rich acidic nu 96.5 0.0017 3.7E-08 61.7 2.6 105 190-297 41-154 (260)
66 KOG2123 Uncharacterized conser 96.4 0.00022 4.8E-09 67.7 -3.7 58 190-248 39-98 (388)
67 KOG1644 U2-associated snRNP A' 96.1 0.0058 1.3E-07 55.7 3.8 87 185-272 57-150 (233)
68 KOG2123 Uncharacterized conser 96.1 0.00052 1.1E-08 65.2 -2.9 105 190-297 17-128 (388)
69 PF00560 LRR_1: Leucine Rich R 95.9 0.0042 9.2E-08 34.7 1.2 22 193-214 1-22 (22)
70 PF13504 LRR_7: Leucine rich r 95.1 0.012 2.7E-07 30.3 1.2 16 216-231 2-17 (17)
71 KOG0473 Leucine-rich repeat pr 94.9 0.0014 3E-08 60.7 -4.6 86 187-273 37-122 (326)
72 KOG2739 Leucine-rich acidic nu 94.6 0.0085 1.8E-07 57.1 -0.3 61 212-273 40-102 (260)
73 PF13306 LRR_5: Leucine rich r 94.4 0.11 2.4E-06 45.5 6.4 78 190-271 10-90 (129)
74 COG5238 RNA1 Ran GTPase-activa 94.3 0.012 2.6E-07 56.1 0.0 175 209-424 24-224 (388)
75 PF13504 LRR_7: Leucine rich r 93.9 0.037 8.1E-07 28.5 1.4 17 813-830 1-17 (17)
76 KOG3864 Uncharacterized conser 93.6 0.0066 1.4E-07 55.3 -3.0 85 673-767 103-190 (221)
77 KOG3864 Uncharacterized conser 93.5 0.017 3.7E-07 52.8 -0.5 38 789-826 151-189 (221)
78 PF13306 LRR_5: Leucine rich r 92.4 0.49 1.1E-05 41.4 7.2 9 647-655 57-65 (129)
79 smart00370 LRR Leucine-rich re 92.1 0.13 2.7E-06 30.1 2.0 21 214-234 1-21 (26)
80 smart00369 LRR_TYP Leucine-ric 92.1 0.13 2.7E-06 30.1 2.0 21 214-234 1-21 (26)
81 KOG0473 Leucine-rich repeat pr 91.5 0.011 2.4E-07 54.9 -4.4 86 204-291 30-116 (326)
82 smart00367 LRR_CC Leucine-rich 85.9 0.5 1.1E-05 27.6 1.4 16 812-827 1-16 (26)
83 smart00369 LRR_TYP Leucine-ric 84.8 0.54 1.2E-05 27.4 1.2 21 191-211 1-21 (26)
84 smart00370 LRR Leucine-rich re 84.8 0.54 1.2E-05 27.4 1.2 21 191-211 1-21 (26)
85 smart00364 LRR_BAC Leucine-ric 79.8 1.1 2.5E-05 25.9 1.2 18 215-232 2-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 76.6 2 4.4E-05 25.1 1.6 16 215-230 2-17 (26)
87 PF13516 LRR_6: Leucine Rich r 70.6 1.5 3.2E-05 24.9 0.1 12 216-227 3-14 (24)
88 smart00368 LRR_RI Leucine rich 59.5 7.3 0.00016 23.2 1.6 14 215-228 2-15 (28)
89 KOG3763 mRNA export factor TAP 38.4 16 0.00035 39.5 1.4 79 625-703 219-307 (585)
90 PF05725 FNIP: FNIP Repeat; I 28.5 1E+02 0.0022 20.7 3.5 13 716-728 30-42 (44)
91 PF13730 HTH_36: Helix-turn-he 28.0 1.5E+02 0.0033 20.8 4.7 51 30-92 2-55 (55)
92 KOG3763 mRNA export factor TAP 25.4 41 0.00088 36.7 1.7 14 562-575 216-229 (585)
93 PRK04841 transcriptional regul 21.3 2E+02 0.0044 35.1 7.0 81 19-116 250-332 (903)
94 PF14162 YozD: YozD-like prote 20.3 1.6E+02 0.0036 20.3 3.1 31 61-94 22-52 (57)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-47 Score=427.48 Aligned_cols=291 Identities=31% Similarity=0.468 Sum_probs=233.5
Q ss_pred CchhcccccCcC----CCCCCCCchHHHHhccccCChhhhhHhhhhCCCCCCCccCHHHHHHHHHHcCCcCCCCCCCchH
Q 038658 1 DWEGVLSCNIWD----LPEERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCE 76 (831)
Q Consensus 1 ~W~~~l~~~~~~----~~~~~~~i~~~L~lSY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~wi~~G~i~~~~~~~~~~ 76 (831)
||+++.+...+. .+++++.|+++|++|||+||.++|.||+|||+|||||+|++++||.|||||||+.+.++++.++
T Consensus 374 eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~ 453 (889)
T KOG4658|consen 374 EWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAE 453 (889)
T ss_pred HHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchh
Confidence 699999977665 3445689999999999999988999999999999999999999999999999999977789999
Q ss_pred HHHHHHHHHHHhcccceeec--CCcccEeecHHHHHHHHHHhc-----CcEEEeeccccc--ccccccCCCeeEEEEEcc
Q 038658 77 DLGRKFFQELRARSFFQQSS--NNKSLFVMHDLINDLAHWAAG-----EIYFTMDYTSEV--NKQQSFSKNLRHLSCICG 147 (831)
Q Consensus 77 ~~~~~~~~~Lv~~~ll~~~~--~~~~~~~mHdlv~d~a~~i~~-----~~~~~~~~~~~~--~~~~~~~~~~r~l~~~~~ 147 (831)
|+|+.|+++||+++|++..+ +...+|+|||+|||||.|+|+ ++..+.....+. .+.......+|++++..+
T Consensus 454 d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~ 533 (889)
T KOG4658|consen 454 DVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNN 533 (889)
T ss_pred cchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEecc
Confidence 99999999999999999875 456899999999999999999 555444332111 122223467899999987
Q ss_pred ccCccccccccccCCcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCC-ccccCccccCCCCCceeecCCC
Q 038658 148 KYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYW-ISELPDSIGDLRYLRYLNLSGT 225 (831)
Q Consensus 148 ~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~-i~~lp~~~~~l~~Lr~L~L~~~ 225 (831)
....+ ..-.++++|++|.++.... ....++..+| .++.||||||++|. +..+|++|+.|.+||||+++++
T Consensus 534 ~~~~~---~~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 534 KIEHI---AGSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred chhhc---cCCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC
Confidence 65433 3445677899998876431 1345666767 89999999999887 8899999999999999999999
Q ss_pred CCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCC
Q 038658 226 QIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDS 300 (831)
Q Consensus 226 ~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~ 300 (831)
.|..+|..+++|+.|.+|++..+.....+|.....|.+||+|.+.... ...-...++.+.+|++|..+.....+
T Consensus 606 ~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 606 GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecch
Confidence 999999999999999999999987777777777779999999997764 22112235555666666555554333
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5e-40 Score=393.81 Aligned_cols=266 Identities=20% Similarity=0.217 Sum_probs=172.8
Q ss_pred CchhcccccCcCCCCCCCCchHHHHhccccCCh-hhhhHhhhhCCCCCCCccCHHHHHHHHHHcCCcCCCCCCCchHHHH
Q 038658 1 DWEGVLSCNIWDLPEERCDIIPALRVSYYYLSA-PLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLG 79 (831)
Q Consensus 1 ~W~~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~-~~k~cfl~~~~fp~~~~i~~~~Li~~wi~~G~i~~~~~~~~~~~~~ 79 (831)
+|+++++...+.. +++|+++|++|||+|++ +.|.||+|||+||.++.+ +.+..|+|.+.+..
T Consensus 406 ~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~----------- 468 (1153)
T PLN03210 406 DWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV----------- 468 (1153)
T ss_pred HHHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------
Confidence 5999998765433 35899999999999987 599999999999998654 45777888775532
Q ss_pred HHHHHHHHhcccceeecCCcccEeecHHHHHHHHHHhcCcEE-------Eeecc--cccccccccCCCeeEEEEEccccC
Q 038658 80 RKFFQELRARSFFQQSSNNKSLFVMHDLINDLAHWAAGEIYF-------TMDYT--SEVNKQQSFSKNLRHLSCICGKYD 150 (831)
Q Consensus 80 ~~~~~~Lv~~~ll~~~~~~~~~~~mHdlv~d~a~~i~~~~~~-------~~~~~--~~~~~~~~~~~~~r~l~~~~~~~~ 150 (831)
+..++.|+++||++... ..+.|||++||||+++++++.. ..... ............++++++......
T Consensus 469 ~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 469 NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 23488999999998753 4699999999999999977531 11000 000011223456677766544332
Q ss_pred ccc-cccccccCCcceEEccccccCCCcccccccccccccCC-cceEEEEeCCCCccccCccccCCCCCceeecCCCCCC
Q 038658 151 GVK-RFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKL-QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIR 228 (831)
Q Consensus 151 ~~~-~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~ 228 (831)
... ...+|.+|++|+.|.+........+.....+|.++..+ .+||.|++.++.+..+|..| ...+|++|+++++.+.
T Consensus 546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 546 ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc
Confidence 211 22456677777777664322111112233455555533 45777777777777777666 4577777777777777
Q ss_pred ccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCcccc
Q 038658 229 TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCL 288 (831)
Q Consensus 229 ~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L 288 (831)
.+|..+..+++|++|++++|..++.+|. ++.+++|+.|++++|..+..+|..++++++|
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCC
Confidence 7777777777777777777666666664 6666777777777665555555444433333
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.7e-38 Score=376.11 Aligned_cols=531 Identities=16% Similarity=0.179 Sum_probs=299.2
Q ss_pred CCeeEEEEEccccCccccccccccCCcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCccc-cCccccCC
Q 038658 137 KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISE-LPDSIGDL 214 (831)
Q Consensus 137 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~-lp~~~~~l 214 (831)
..++.+.+..+...... ...+..+++|++|.+. .|.+.+.+|.+++ .+++|++|+|++|.+.. +|. +.+
T Consensus 69 ~~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls------~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l 139 (968)
T PLN00113 69 SRVVSIDLSGKNISGKI-SSAIFRLPYIQTINLS------NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI 139 (968)
T ss_pred CcEEEEEecCCCccccC-ChHHhCCCCCCEEECC------CCccCCcCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence 35677776655433222 2445667777777443 3345556677766 77777777777777653 343 456
Q ss_pred CCCceeecCCCCCC-ccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccc
Q 038658 215 RYLRYLNLSGTQIR-TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCN 293 (831)
Q Consensus 215 ~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~ 293 (831)
++|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|...+.+|..++++++|++|..
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 77777777777776 56777777777777777777666677777777777777777777766667777777777766621
Q ss_pred eEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEE
Q 038658 294 FVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFI 373 (831)
Q Consensus 294 ~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 373 (831)
. .+.+.......+..+++|++|++++|..... .+..+..+++|+.|++
T Consensus 220 ~---------------------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 220 G---------------------YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-----------IPSSLGNLKNLQYLFL 267 (968)
T ss_pred c---------------------CCccCCcCChhHhcCCCCCEEECcCceeccc-----------cChhHhCCCCCCEEEC
Confidence 1 0111111112234444555555544432111 1222333344444444
Q ss_pred eeecCC-CCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeec
Q 038658 374 SGYGGT-KFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRF 451 (831)
Q Consensus 374 ~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 451 (831)
++|... .+|.++.. +++|+.|++++|.+.+.+| .+..+++|+.|+++++.....
T Consensus 268 ~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~---------------------- 323 (968)
T PLN00113 268 YQNKLSGPIPPSIFS--LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK---------------------- 323 (968)
T ss_pred cCCeeeccCchhHhh--ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc----------------------
Confidence 444332 23333322 3444444444444433333 233444444444433221110
Q ss_pred cccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCCCcccEEEEccccCccccCCCCCccceEEEcCCCCccc
Q 038658 452 ENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVW 531 (831)
Q Consensus 452 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~ 531 (831)
.+..+..+++|+.|++++| .+.+.+|. .+..+++|+.|++++|.....
T Consensus 324 -------------~~~~~~~l~~L~~L~L~~n-~l~~~~p~------------------~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 324 -------------IPVALTSLPRLQVLQLWSN-KFSGEIPK------------------NLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred -------------CChhHhcCCCCCEEECcCC-CCcCcCCh------------------HHhCCCCCcEEECCCCeeEee
Confidence 1111334555566665553 33334443 233445555555555542110
Q ss_pred cccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhh
Q 038658 532 RSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAE 611 (831)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 611 (831)
. +.....+++|+.|++.++..... . ...+..+++|+.|++++|.--..++ .
T Consensus 372 ~------------------------p~~~~~~~~L~~L~l~~n~l~~~---~-p~~~~~~~~L~~L~L~~n~l~~~~p-~ 422 (968)
T PLN00113 372 I------------------------PEGLCSSGNLFKLILFSNSLEGE---I-PKSLGACRSLRRVRLQDNSFSGELP-S 422 (968)
T ss_pred C------------------------ChhHhCcCCCCEEECcCCEeccc---C-CHHHhCCCCCCEEECcCCEeeeECC-h
Confidence 0 00111244556666655542221 1 2234566777777777753222222 1
Q ss_pred hhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCccccccc
Q 038658 612 EEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAW 691 (831)
Q Consensus 612 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~ 691 (831)
.+. .+ ++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|.....++|+.|++++|.....+|..+
T Consensus 423 ~~~------~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 423 EFT------KL-PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred hHh------cC-CCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhh
Confidence 111 11 46888888888877777777777888888888888766666654446788888888887777777777
Q ss_pred ccCCCCCcCeEEEccCCCcceeccC-CCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCCccccc
Q 038658 692 MCDANLSLEILTISRCHSLTYIAEV-QLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIF 770 (831)
Q Consensus 692 ~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~l~~i~ 770 (831)
.. +++|++|++++|.-...+|.. ..+++|++|++++|.-...+ |..+.. +++ |++|++++|.....+.
T Consensus 496 ~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~-----l~~--L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 496 GS--LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI--PASFSE-----MPV--LSQLDLSQNQLSGEIP 564 (968)
T ss_pred hh--hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC--ChhHhC-----ccc--CCEEECCCCcccccCC
Confidence 65 888888888887655556544 44568888888876544444 555555 666 8888888876554421
Q ss_pred chhhhhhhhhccccCCCCCCcCeeEEccCCchhhhhhcCCCCCCCceEEecCCC
Q 038658 771 SKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLETITIISCK 824 (831)
Q Consensus 771 ~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~i~~C~ 824 (831)
. ....+ ++|+.|++++|+....+|.. ..+.++....+.+.+
T Consensus 565 ~-----------~l~~l-~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 565 K-----------NLGNV-ESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred h-----------hHhcC-cccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 0 01223 67888888888866666643 233344444444444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-37 Score=372.04 Aligned_cols=483 Identities=20% Similarity=0.201 Sum_probs=340.9
Q ss_pred CCeeEEEEEccccCccccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcc-ccCccccCCC
Q 038658 137 KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWIS-ELPDSIGDLR 215 (831)
Q Consensus 137 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~~~l~ 215 (831)
..++.+.+..+..........+..+++||.|.+. .|.+.+.+|. ..+++|++|+|++|.+. .+|..+++++
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls------~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS------NNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECc------CCccccccCc--cccCCCCEEECcCCcccccCChHHhcCC
Confidence 5677888776654321111224478999999553 3445555554 35789999999999987 6799999999
Q ss_pred CCceeecCCCCCC-ccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccce
Q 038658 216 YLRYLNLSGTQIR-TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNF 294 (831)
Q Consensus 216 ~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~ 294 (831)
+||+|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|...+.+|..++++++|++|+..
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 9999999999986 789999999999999999998888899999999999999999999778899999999999999321
Q ss_pred EecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEe
Q 038658 295 VVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFIS 374 (831)
Q Consensus 295 ~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 374 (831)
.+.+.......+.++++|+.|++++|..... .+..+..+++|+.|+++
T Consensus 245 ---------------------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 245 ---------------------YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-----------IPPSIFSLQKLISLDLS 292 (968)
T ss_pred ---------------------CceeccccChhHhCCCCCCEEECcCCeeecc-----------CchhHhhccCcCEEECc
Confidence 2223333345678889999999988765332 33456677899999999
Q ss_pred eecCC-CCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeecc
Q 038658 375 GYGGT-KFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFE 452 (831)
Q Consensus 375 ~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 452 (831)
+|... .+|.++.. +++|+.|++++|.+.+.+| .+..+++|+.|++++|.....++..
T Consensus 293 ~n~l~~~~p~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~------------------- 351 (968)
T PLN00113 293 DNSLSGEIPELVIQ--LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN------------------- 351 (968)
T ss_pred CCeeccCCChhHcC--CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH-------------------
Confidence 98865 56777765 8999999999999988877 6889999999999886533222211
Q ss_pred ccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC---CCCcccEEEEcccc---CccccCCCCCccceEEEcCC
Q 038658 453 NLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE---HLPALEMLVIGGCE---ELLVSITSLPALSKLEIGGC 526 (831)
Q Consensus 453 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~---~l~~~~~~l~~L~~L~l~~~ 526 (831)
++.+++|+.|++++| ++.+.+|. .+++|+.|++++|. .++..+..+++|+.|++++|
T Consensus 352 ----------------l~~~~~L~~L~Ls~n-~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 352 ----------------LGKHNNLTVLDLSTN-NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred ----------------HhCCCCCcEEECCCC-eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 223455555555552 34434443 23445555555544 22234455677777777776
Q ss_pred CCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcc
Q 038658 527 KKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQ 606 (831)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 606 (831)
...... +..+..+++|+.|+++++.... .....+..+++|+.|++++|.-..
T Consensus 415 ~l~~~~------------------------p~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 415 SFSGEL------------------------PSEFTKLPLVYFLDISNNNLQG----RINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred EeeeEC------------------------ChhHhcCCCCCEEECcCCcccC----ccChhhccCCCCcEEECcCceeee
Confidence 632210 1112346777777777765322 223334567888888888875444
Q ss_pred cchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCC-CCCCccEEEEecCCCCc
Q 038658 607 SLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVA-LPSKVRSISIHRCDALK 685 (831)
Q Consensus 607 ~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~-~~~~L~~L~l~~c~~l~ 685 (831)
.++.. + . ..+|+.|++++|...+.+|..+.++++|++|++++|.....+|... .+++|++|++++|...+
T Consensus 467 ~~p~~-~-------~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 537 (968)
T PLN00113 467 GLPDS-F-------G-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537 (968)
T ss_pred ecCcc-c-------c-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccc
Confidence 43321 0 1 1468888888888877888888888888888888885555565432 37788888888887777
Q ss_pred ccccccccCCCCCcCeEEEccCCCcceeccC-CCCCCCceEEEecCCCCCcc
Q 038658 686 SLPEAWMCDANLSLEILTISRCHSLTYIAEV-QLPPSLKNVVIRNCDNVRTL 736 (831)
Q Consensus 686 ~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~l 736 (831)
.+|..+.. +++|+.|++++|.....+|.. ..+++|++|++++|+-...+
T Consensus 538 ~~p~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 538 QIPASFSE--MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred cCChhHhC--cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence 77777766 888888888887665566644 33467888888777654445
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=3.1e-29 Score=241.84 Aligned_cols=407 Identities=22% Similarity=0.255 Sum_probs=219.5
Q ss_pred ccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccc
Q 038658 186 PKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLH 265 (831)
Q Consensus 186 ~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~ 265 (831)
+++..+..|.||++.+|.+.++|.+++++..++.|+.++|++..+|+.++.+.+|+.|+.++|. ...+|++++.+..|+
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLE 140 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhh
Confidence 3344555555666666655555555555666666666666555666666666666666655543 445555555555555
Q ss_pred ccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCC
Q 038658 266 HLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTD 345 (831)
Q Consensus 266 ~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~ 345 (831)
.|+..+|+ +.+.|.+++++.+|..| .+.+|....
T Consensus 141 dl~~~~N~-i~slp~~~~~~~~l~~l---------------------------------------------~~~~n~l~~ 174 (565)
T KOG0472|consen 141 DLDATNNQ-ISSLPEDMVNLSKLSKL---------------------------------------------DLEGNKLKA 174 (565)
T ss_pred hhhccccc-cccCchHHHHHHHHHHh---------------------------------------------hccccchhh
Confidence 55555554 55555555555544444 111111110
Q ss_pred CCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658 346 GSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 425 (831)
.++..-.++.|++++...|-.+.+|..++. +.+|..|++..|.+ ..+|.++++..|+++++.. +
T Consensus 175 ------------l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~Nki-~~lPef~gcs~L~Elh~g~-N 238 (565)
T KOG0472|consen 175 ------------LPENHIAMKRLKHLDCNSNLLETLPPELGG--LESLELLYLRRNKI-RFLPEFPGCSLLKELHVGE-N 238 (565)
T ss_pred ------------CCHHHHHHHHHHhcccchhhhhcCChhhcc--hhhhHHHHhhhccc-ccCCCCCccHHHHHHHhcc-c
Confidence 111111246677777777777777777765 67777777777765 3456777777777777654 2
Q ss_pred CceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC---CCCcccEEEE
Q 038658 426 RVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE---HLPALEMLVI 502 (831)
Q Consensus 426 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l 502 (831)
.++.++.+. ...++++..|++++ ++++ .+|. .+.+|+.|++
T Consensus 239 ~i~~lpae~----------------------------------~~~L~~l~vLDLRd-Nklk-e~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 239 QIEMLPAEH----------------------------------LKHLNSLLVLDLRD-NKLK-EVPDEICLLRSLERLDL 282 (565)
T ss_pred HHHhhHHHH----------------------------------hcccccceeeeccc-cccc-cCchHHHHhhhhhhhcc
Confidence 333322111 23577888888888 6887 7786 4567888888
Q ss_pred cccc--CccccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchh
Q 038658 503 GGCE--ELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYI 580 (831)
Q Consensus 503 ~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 580 (831)
++|. .++..++++ .|+.|.+.+|+.-+.....-..+.+.....-. + ..... .+.+=+.=.-..... .-
T Consensus 283 SNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLr---s-~~~~d---glS~se~~~e~~~t~--~~ 352 (565)
T KOG0472|consen 283 SNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLR---S-KIKDD---GLSQSEGGTETAMTL--PS 352 (565)
T ss_pred cCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHH---H-hhccC---CCCCCcccccccCCC--CC
Confidence 8887 566677777 88888888888554321110000000000000 0 00000 000000000000000 00
Q ss_pred cccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCC
Q 038658 581 WKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSS 660 (831)
Q Consensus 581 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~ 660 (831)
.+......+.+.+.|++++ .+++.+|.+.|+...+ .-....+++.|. +..+|..+..+..+.+.-+..+..
T Consensus 353 --~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~-----~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 353 --ESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKS-----EIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNK 423 (565)
T ss_pred --Ccccchhhhhhhhhhcccc-cccccCCHHHHHHhhh-----cceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCc
Confidence 0011123455677778777 6778888776665432 125667777776 455676666555555444444434
Q ss_pred CccccCCCC-CCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceec
Q 038658 661 FVSFPEVAL-PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIA 714 (831)
Q Consensus 661 l~~l~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~ 714 (831)
+..+|.... +++|..|++++ +.+.++|..+.. +..|+.|+++.+ ..+.+|
T Consensus 424 isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~--lv~Lq~LnlS~N-rFr~lP 474 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGS--LVRLQTLNLSFN-RFRMLP 474 (565)
T ss_pred cccchHHHHhhhcceeeeccc-chhhhcchhhhh--hhhhheeccccc-ccccch
Confidence 444433211 66777777766 446677766665 666777777764 444444
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=3.1e-26 Score=231.34 Aligned_cols=362 Identities=19% Similarity=0.201 Sum_probs=212.6
Q ss_pred ceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658 193 RLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN 271 (831)
Q Consensus 193 ~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 271 (831)
.-++||+++|.+..+ +..|.++++|+.+++.+|.++.+|...+...+|+.|+|.+|.....-.+.+..++.||.|||+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 457899999999887 6778999999999999999999998888888999999999764443455688899999999998
Q ss_pred CCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhh
Q 038658 272 TDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLRE 351 (831)
Q Consensus 272 ~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 351 (831)
|. +..+|.. .+....++++|++..|.+...
T Consensus 159 N~-is~i~~~--------------------------------------------sfp~~~ni~~L~La~N~It~l----- 188 (873)
T KOG4194|consen 159 NL-ISEIPKP--------------------------------------------SFPAKVNIKKLNLASNRITTL----- 188 (873)
T ss_pred ch-hhcccCC--------------------------------------------CCCCCCCceEEeecccccccc-----
Confidence 87 5555521 111223344444444333221
Q ss_pred hhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCC-CCCCCCCCCcceEEeccccCceee
Q 038658 352 AETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTT-LPSVGQLPSLKHLAVRRMSRVRRL 430 (831)
Q Consensus 352 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~L~~~~~l~~~ 430 (831)
....+..+.+|..|.|+.|+++.+|...+. .+++|+.|+|..|.+... .-.+.++++|+.|.+..++ +..+
T Consensus 189 ------~~~~F~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL 260 (873)
T KOG4194|consen 189 ------ETGHFDSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKL 260 (873)
T ss_pred ------ccccccccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC-cccc
Confidence 112233334455555555555555543332 244555555555443221 1134444555554444422 1111
Q ss_pred CccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCCCcccEEEEccccCccc
Q 038658 431 GSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLV 510 (831)
Q Consensus 431 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~ 510 (831)
. .+. +.++.++++|++.. +++. .+.+ .
T Consensus 261 ~-------------------------------DG~---Fy~l~kme~l~L~~-N~l~-~vn~-----------------g 287 (873)
T KOG4194|consen 261 D-------------------------------DGA---FYGLEKMEHLNLET-NRLQ-AVNE-----------------G 287 (873)
T ss_pred c-------------------------------Ccc---eeeecccceeeccc-chhh-hhhc-----------------c
Confidence 0 111 33566667777766 4554 3322 1
Q ss_pred cCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCccccc
Q 038658 511 SITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQD 590 (831)
Q Consensus 511 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 590 (831)
++..+++|+.|+++.|...... .......++|++|+++++. +...+.+.+..
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih------------------------~d~WsftqkL~~LdLs~N~----i~~l~~~sf~~ 339 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIH------------------------IDSWSFTQKLKELDLSSNR----ITRLDEGSFRV 339 (873)
T ss_pred cccccchhhhhccchhhhheee------------------------cchhhhcccceeEeccccc----cccCChhHHHH
Confidence 3334455555555554422210 0011224556666665554 22245555666
Q ss_pred CCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccc---cccCCCCCCCeEEEecCCCCccccCC
Q 038658 591 ISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLP---QSLLSLSSLREIEIYNCSSFVSFPEV 667 (831)
Q Consensus 591 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~---~~l~~l~~L~~L~L~~~~~l~~l~~~ 667 (831)
+..|++|.++. +++.++....|..+ ++|++|++++|.....+. ..+..+++|+.|++.+| +++++|.-
T Consensus 340 L~~Le~LnLs~-Nsi~~l~e~af~~l-------ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~kr 410 (873)
T KOG4194|consen 340 LSQLEELNLSH-NSIDHLAEGAFVGL-------SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKR 410 (873)
T ss_pred HHHhhhhcccc-cchHHHHhhHHHHh-------hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchh
Confidence 77777777777 67777776666655 577778877777554432 24556778888888877 67777765
Q ss_pred CC--CCCccEEEEecCCCCcccccccccCCCCCcCeEEEc
Q 038658 668 AL--PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTIS 705 (831)
Q Consensus 668 ~~--~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 705 (831)
.+ +++|+.|++.+|...+.-|..|.. + .|++|.+.
T Consensus 411 Afsgl~~LE~LdL~~NaiaSIq~nAFe~--m-~Lk~Lv~n 447 (873)
T KOG4194|consen 411 AFSGLEALEHLDLGDNAIASIQPNAFEP--M-ELKELVMN 447 (873)
T ss_pred hhccCcccceecCCCCcceeeccccccc--c-hhhhhhhc
Confidence 55 778888888776655555555543 3 66666553
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=8.3e-29 Score=238.88 Aligned_cols=223 Identities=23% Similarity=0.231 Sum_probs=129.1
Q ss_pred cccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcc
Q 038658 183 SILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLI 262 (831)
Q Consensus 183 ~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~ 262 (831)
+.|+++.++..++.|+.++|.+..+|+.++.+..|+.|+.++|.+.++|++++.+..|+.|+..+|. +..+|++++.+.
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~ 160 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLS 160 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHH
Confidence 4455555555555555555555555555555555555555555555555555555555555555432 444555555555
Q ss_pred cccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhcccccc----CeeeEcccccccccCCCCcceEEE
Q 038658 263 KLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLR----GTLTISKLENAQLDGKKNLKVLML 338 (831)
Q Consensus 263 ~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~----~~l~i~~l~~~~l~~~~~L~~L~l 338 (831)
+|..|++.+|. ++.+|+..-+++.|++|+....- -+....+++.+..|. ..+.+..+. .|.++..|++|++
T Consensus 161 ~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~--L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~ 235 (565)
T KOG0472|consen 161 KLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNL--LETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHV 235 (565)
T ss_pred HHHHhhccccc-hhhCCHHHHHHHHHHhcccchhh--hhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHh
Confidence 55555555554 33444333334444444211100 001111111111111 033333333 5777777888777
Q ss_pred EeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcce
Q 038658 339 RWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKH 418 (831)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~ 418 (831)
..|.... -..+....++++..|++..|+.+.+|..+.- +++|.+||+++|.+..-.+.++++ .|+.
T Consensus 236 g~N~i~~-----------lpae~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~is~Lp~sLgnl-hL~~ 301 (565)
T KOG0472|consen 236 GENQIEM-----------LPAEHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNNDISSLPYSLGNL-HLKF 301 (565)
T ss_pred cccHHHh-----------hHHHHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCccccCCcccccc-eeee
Confidence 5554311 1223456778999999999999999998865 789999999999998777799999 9999
Q ss_pred EEecccc
Q 038658 419 LAVRRMS 425 (831)
Q Consensus 419 L~L~~~~ 425 (831)
|.+.|++
T Consensus 302 L~leGNP 308 (565)
T KOG0472|consen 302 LALEGNP 308 (565)
T ss_pred hhhcCCc
Confidence 9999875
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1.6e-26 Score=246.34 Aligned_cols=436 Identities=24% Similarity=0.284 Sum_probs=267.4
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
+.-+|++||+++|.+..+|..+..+.+|+.|+++.|.|..+|.+++++.+|++|.|.+| .+..+|.++..+++|++|++
T Consensus 43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred heeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhccccccc
Confidence 44459999999999999999999999999999999999999999999999999999975 58889999999999999999
Q ss_pred CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccc--cccCeeeEcccccccccCCCCcce-EEEEeecCCCC
Q 038658 270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLT--HLRGTLTISKLENAQLDGKKNLKV-LMLRWTNSTDG 346 (831)
Q Consensus 270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~--~L~~~l~i~~l~~~~l~~~~~L~~-L~l~~~~~~~~ 346 (831)
++|. ...+|.-+..++.+..+...... .+..++... ++ .+....+.........+++. |++++|...
T Consensus 122 S~N~-f~~~Pl~i~~lt~~~~~~~s~N~-----~~~~lg~~~ik~~--~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-- 191 (1081)
T KOG0618|consen 122 SFNH-FGPIPLVIEVLTAEEELAASNNE-----KIQRLGQTSIKKL--DLRLNVLGGSFLIDIYNLTHQLDLRYNEME-- 191 (1081)
T ss_pred chhc-cCCCchhHHhhhHHHHHhhhcch-----hhhhhccccchhh--hhhhhhcccchhcchhhhheeeecccchhh--
Confidence 9998 77788888888877776322110 111111111 11 11111222222222223333 555555432
Q ss_pred CChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEeccccC
Q 038658 347 SSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSR 426 (831)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 426 (831)
.-.+..+.+|+.+....+....+-. .-++++.|+.++|.+....+ -..-.+|+.++++.+.
T Consensus 192 ------------~~dls~~~~l~~l~c~rn~ls~l~~-----~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~- 252 (1081)
T KOG0618|consen 192 ------------VLDLSNLANLEVLHCERNQLSELEI-----SGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNN- 252 (1081)
T ss_pred ------------hhhhhhccchhhhhhhhcccceEEe-----cCcchheeeeccCcceeecc-ccccccceeeecchhh-
Confidence 0113333444444444444332211 12445555555554442111 0111234444443321
Q ss_pred ceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC---CCCcccEEEEc
Q 038658 427 VRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE---HLPALEMLVIG 503 (831)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~ 503 (831)
+.++.+| ++.+++|+.+.+.+ +.+. .+|. ...+|+.|.+.
T Consensus 253 ---------------------------l~~lp~w--------i~~~~nle~l~~n~-N~l~-~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 253 ---------------------------LSNLPEW--------IGACANLEALNANH-NRLV-ALPLRISRITSLVSLSAA 295 (1081)
T ss_pred ---------------------------hhcchHH--------HHhcccceEecccc-hhHH-hhHHHHhhhhhHHHHHhh
Confidence 1111122 33456666666655 4554 5553 23344444444
Q ss_pred ccc--CccccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhc
Q 038658 504 GCE--ELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIW 581 (831)
Q Consensus 504 ~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 581 (831)
.|. .++.....+..|+.|++..|..-.
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N~L~~--------------------------------------------------- 324 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSNNLPS--------------------------------------------------- 324 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhccccc---------------------------------------------------
Confidence 443 222233335555555555544211
Q ss_pred ccCCcccccCCC-ccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCC
Q 038658 582 KRHNGFLQDISS-LKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSS 660 (831)
Q Consensus 582 ~~~~~~~~~l~~-L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~ 660 (831)
.|..++..... |+.|..+. +.+..++..+.... +.|+.|++.+|.........+.++.+|+.|+|++| .
T Consensus 325 -lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~-------~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-r 394 (1081)
T KOG0618|consen 325 -LPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNH-------AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-R 394 (1081)
T ss_pred -cchHHHhhhhHHHHHHhhhh-ccccccccccchhh-------HHHHHHHHhcCcccccchhhhccccceeeeeeccc-c
Confidence 12221111111 23333322 33333331111111 46889999999987777667888999999999998 7
Q ss_pred CccccCCCC--CCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccCCCCCCCceEEEecCCCCCcccc
Q 038658 661 FVSFPEVAL--PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTV 738 (831)
Q Consensus 661 l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~ 738 (831)
+.++|...+ +..|++|+++| +.++.+|..... +..|++|...+ +++..+|+...++.|+.+|+ +|++|+.+..
T Consensus 395 L~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~--~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDl-S~N~L~~~~l 469 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSG-NKLTTLPDTVAN--LGRLHTLRAHS-NQLLSFPELAQLPQLKVLDL-SCNNLSEVTL 469 (1081)
T ss_pred cccCCHHHHhchHHhHHHhccc-chhhhhhHHHHh--hhhhHHHhhcC-CceeechhhhhcCcceEEec-ccchhhhhhh
Confidence 888987655 88999999999 669999988887 99999998877 47888997777889999999 5688887743
Q ss_pred ccCccCCcccccCccccceEEEecCCCc
Q 038658 739 EEGIQSSSSRRYTSSLLEHLHIESCPSL 766 (831)
Q Consensus 739 ~~~~~~~~~~~l~~~~L~~L~i~~c~~l 766 (831)
+.. +++++|++|+++++..+
T Consensus 470 ~~~--------~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 470 PEA--------LPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhh--------CCCcccceeeccCCccc
Confidence 332 44455999999998764
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=4.7e-23 Score=247.86 Aligned_cols=199 Identities=20% Similarity=0.326 Sum_probs=108.6
Q ss_pred CCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCc----
Q 038658 563 LPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLV---- 638 (831)
Q Consensus 563 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~---- 638 (831)
+++|+.|.+++|..++. .+ ...++|++|+++++ .+..+|... .+ .+|++|.+.++....
T Consensus 703 l~sL~~L~Lsgc~~L~~---~p----~~~~nL~~L~L~~n-~i~~lP~~~--------~l-~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKS---FP----DISTNISWLDLDET-AIEEFPSNL--------RL-ENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CCCCCEEeCCCCCCccc---cc----cccCCcCeeecCCC-ccccccccc--------cc-cccccccccccchhhcccc
Confidence 45556666666554443 11 11345666666553 344444221 11 356666665543211
Q ss_pred --cc-ccccCCCCCCCeEEEecCCCCccccCCCC-CCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceec
Q 038658 639 --KL-PQSLLSLSSLREIEIYNCSSFVSFPEVAL-PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIA 714 (831)
Q Consensus 639 --~l-~~~l~~l~~L~~L~L~~~~~l~~l~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~ 714 (831)
.+ +.....+++|+.|++++|+.+..+|.... +++|+.|++++|..++.+|... . +++|+.|++++|..++.+|
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~--L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N--LESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C--ccccCEEECCCCCcccccc
Confidence 00 11112235667777777666666664322 6667777777776666666554 2 6667777777776666665
Q ss_pred cCCCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCCcccccchhhhhhhhhccccCCCCCCcCee
Q 038658 715 EVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSL 794 (831)
Q Consensus 715 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~~l~~~L~~L 794 (831)
. .+++|+.|++++ +.++.+ |..+.. +++ |++|++++|++++.+.. ....+ ++|+.+
T Consensus 843 ~--~~~nL~~L~Ls~-n~i~~i--P~si~~-----l~~--L~~L~L~~C~~L~~l~~-----------~~~~L-~~L~~L 898 (1153)
T PLN03210 843 D--ISTNISDLNLSR-TGIEEV--PWWIEK-----FSN--LSFLDMNGCNNLQRVSL-----------NISKL-KHLETV 898 (1153)
T ss_pred c--cccccCEeECCC-CCCccC--hHHHhc-----CCC--CCEEECCCCCCcCccCc-----------ccccc-cCCCee
Confidence 2 345667777665 455655 555544 555 77777777776666320 11223 566666
Q ss_pred EEccCCchhhh
Q 038658 795 EVLSCSKLESI 805 (831)
Q Consensus 795 ~l~~~~~l~~l 805 (831)
++++|++|+.+
T Consensus 899 ~l~~C~~L~~~ 909 (1153)
T PLN03210 899 DFSDCGALTEA 909 (1153)
T ss_pred ecCCCcccccc
Confidence 77777666544
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-24 Score=219.46 Aligned_cols=280 Identities=18% Similarity=0.171 Sum_probs=199.8
Q ss_pred CcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccc
Q 038658 176 SQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKL 254 (831)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~l 254 (831)
+.|.+...-+..|.++++|+.+++..|.++.+|...+...||+.|+|.+|.|.++- +++..+..||+|||+.|. +..+
T Consensus 86 snNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i 164 (873)
T KOG4194|consen 86 SNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEI 164 (873)
T ss_pred cccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcc
Confidence 44556555566666999999999999999999987788888999999999999885 578999999999999965 6666
Q ss_pred ccc-ccCcccccccccCCCCCcccccC-CCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCC
Q 038658 255 CAG-MGNLIKLHHLNNSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKN 332 (831)
Q Consensus 255 p~~-i~~L~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~ 332 (831)
|.. +..=.++++|+|++|. ++.+-. .|..+.+|-+| +|. .++++.+....|+.+++
T Consensus 165 ~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tl--------------------kLs-rNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 165 PKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTL--------------------KLS-RNRITTLPQRSFKRLPK 222 (873)
T ss_pred cCCCCCCCCCceEEeecccc-ccccccccccccchheee--------------------ecc-cCcccccCHHHhhhcch
Confidence 643 6676889999999998 554443 37777777777 222 55677777777888888
Q ss_pred cceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCC
Q 038658 333 LKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVG 411 (831)
Q Consensus 333 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~ 411 (831)
|+.|++..|.+... ..-.+..+++|+.|.+..|.+..+.+..+- .+.+++.|+|+.|.+...-. ++-
T Consensus 223 L~~LdLnrN~iriv-----------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy-~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 223 LESLDLNRNRIRIV-----------EGLTFQGLPSLQNLKLQRNDISKLDDGAFY-GLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred hhhhhccccceeee-----------hhhhhcCchhhhhhhhhhcCcccccCccee-eecccceeecccchhhhhhccccc
Confidence 88888877654221 123467778888888888888777655443 37888888888888765444 777
Q ss_pred CCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCC
Q 038658 412 QLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFP 491 (831)
Q Consensus 412 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p 491 (831)
+++.|+.|+++++ .++.+... . ....++|++|++++ ++++ .++
T Consensus 291 gLt~L~~L~lS~N-aI~rih~d-------------------------~---------WsftqkL~~LdLs~-N~i~-~l~ 333 (873)
T KOG4194|consen 291 GLTSLEQLDLSYN-AIQRIHID-------------------------S---------WSFTQKLKELDLSS-NRIT-RLD 333 (873)
T ss_pred ccchhhhhccchh-hhheeecc-------------------------h---------hhhcccceeEeccc-cccc-cCC
Confidence 8888888888764 23322110 1 33568899999988 6777 666
Q ss_pred C----CCCcccEEEEccccCc---cccCCCCCccceEEEcCCC
Q 038658 492 E----HLPALEMLVIGGCEEL---LVSITSLPALSKLEIGGCK 527 (831)
Q Consensus 492 ~----~l~~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~ 527 (831)
+ .+..|+.|.++.|..- ...+..+.+|++|+++.|.
T Consensus 334 ~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred hhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 4 3556666666666521 2344456666666666665
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=3.3e-25 Score=225.48 Aligned_cols=318 Identities=24% Similarity=0.262 Sum_probs=201.1
Q ss_pred CCeeEEEEEccccCccccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCC
Q 038658 137 KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRY 216 (831)
Q Consensus 137 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~ 216 (831)
.++.|+++..+....+ ..++..++.||++++.+.. --...+|+++|+++.|.+|||++|++.+.|..+..-++
T Consensus 55 qkLEHLs~~HN~L~~v--hGELs~Lp~LRsv~~R~N~-----LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn 127 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISV--HGELSDLPRLRSVIVRDNN-----LKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKN 127 (1255)
T ss_pred hhhhhhhhhhhhhHhh--hhhhccchhhHHHhhhccc-----cccCCCCchhcccccceeeecchhhhhhcchhhhhhcC
Confidence 5677888777654332 3567788899998765532 12356899999999999999999999999999999999
Q ss_pred CceeecCCCCCCccchhh-hccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceE
Q 038658 217 LRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFV 295 (831)
Q Consensus 217 Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~ 295 (831)
+-+|+||+|+|.++|..+ -+|+.|-+|||++|+ +..+|..+.+|.+|+.|.+++|....---..+..+++|++|....
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence 999999999999999654 899999999999975 889999999999999999999973222112233455555552111
Q ss_pred ecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEee
Q 038658 296 VGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISG 375 (831)
Q Consensus 296 ~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 375 (831)
.... ..--...+.++.+|..++++.|+... +++.+-.+.+|+.|++++
T Consensus 207 TqRT--------------------l~N~Ptsld~l~NL~dvDlS~N~Lp~------------vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 207 TQRT--------------------LDNIPTSLDDLHNLRDVDLSENNLPI------------VPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred ccch--------------------hhcCCCchhhhhhhhhccccccCCCc------------chHHHhhhhhhheeccCc
Confidence 1100 00001234444555566665555421 345555666677777777
Q ss_pred ecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccc
Q 038658 376 YGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLL 455 (831)
Q Consensus 376 ~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 455 (831)
|.++.+....+. ..+|+.|+++.|++......+.++++|+.|.+.++. +
T Consensus 255 N~iteL~~~~~~--W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L---------------------------- 303 (1255)
T KOG0444|consen 255 NKITELNMTEGE--WENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-L---------------------------- 303 (1255)
T ss_pred CceeeeeccHHH--HhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-c----------------------------
Confidence 766655444333 456667777766654333356666666666665432 1
Q ss_pred cccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCC---CCcccEEEEccccC--ccccCCCCCccceEEEcCCCCcc
Q 038658 456 EWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEH---LPALEMLVIGGCEE--LLVSITSLPALSKLEIGGCKKVV 530 (831)
Q Consensus 456 ~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~---l~~L~~L~l~~~~~--l~~~~~~l~~L~~L~l~~~~~~~ 530 (831)
...+.|.+++.+.+|+.+...+ +++. .+|++ ++.|+.|.++.|.. ++..+..++.|+.|++..|+.+.
T Consensus 304 -----~FeGiPSGIGKL~~Levf~aan-N~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 304 -----TFEGIPSGIGKLIQLEVFHAAN-NKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred -----cccCCccchhhhhhhHHHHhhc-cccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence 1122333444555555555554 4444 44542 34455555555542 23344455566666666665555
Q ss_pred cc
Q 038658 531 WR 532 (831)
Q Consensus 531 ~~ 532 (831)
.+
T Consensus 377 MP 378 (1255)
T KOG0444|consen 377 MP 378 (1255)
T ss_pred CC
Confidence 44
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.1e-24 Score=221.81 Aligned_cols=113 Identities=21% Similarity=0.239 Sum_probs=85.1
Q ss_pred ccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCC-CcccccccCCCCCCCeEEEecCCCCccccCC
Q 038658 589 QDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKG-LVKLPQSLLSLSSLREIEIYNCSSFVSFPEV 667 (831)
Q Consensus 589 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~ 667 (831)
+...+|++|.++. ++++.+|.... .+ +.|+.|.+.+|.. ...+|++++.+.+|+.+...+| .++-+|++
T Consensus 265 ~~W~~lEtLNlSr-NQLt~LP~avc-------KL-~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEg 334 (1255)
T KOG0444|consen 265 GEWENLETLNLSR-NQLTVLPDAVC-------KL-TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEG 334 (1255)
T ss_pred HHHhhhhhhcccc-chhccchHHHh-------hh-HHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchh
Confidence 4455677778877 67777764321 22 3688888888764 3568999999999999998887 78888875
Q ss_pred CC-CCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceec
Q 038658 668 AL-PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIA 714 (831)
Q Consensus 668 ~~-~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~ 714 (831)
.. +..|+.|.++. +.+-.+|+.+.- ++-|+.|++..+|++.--|
T Consensus 335 lcRC~kL~kL~L~~-NrLiTLPeaIHl--L~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDH-NRLITLPEAIHL--LPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhHHHHHhcccc-cceeechhhhhh--cCCcceeeccCCcCccCCC
Confidence 55 88889988876 567778888877 8899999999888876444
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=4.9e-24 Score=227.58 Aligned_cols=110 Identities=25% Similarity=0.323 Sum_probs=85.7
Q ss_pred cccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhh
Q 038658 156 EDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVN 235 (831)
Q Consensus 156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~ 235 (831)
+.+.+.-+|++|.+.. ......|..+..+.+|+.|+++.|.|.++|.+.+++.+|++|+|.+|.+..+|.++.
T Consensus 39 ~~~~~~v~L~~l~lsn-------n~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~ 111 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSN-------NQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASIS 111 (1081)
T ss_pred HHhhheeeeEEeeccc-------cccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHH
Confidence 3344455577764433 234566777778888999999999888888888889999999999998888999999
Q ss_pred ccCCccEEeecCcCccccccccccCcccccccccCCCC
Q 038658 236 KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTD 273 (831)
Q Consensus 236 ~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 273 (831)
.+++|++||+++|. ...+|..+..+..+..+..++|.
T Consensus 112 ~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNE 148 (1081)
T ss_pred hhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcch
Confidence 99999999999865 66778878888888888887773
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=6e-15 Score=164.30 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=57.8
Q ss_pred cceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658 192 QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN 271 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 271 (831)
..-.+|+++++.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++|. +..+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccC
Confidence 345688999999988888775 4789999999999888853 5788888888864 5566653 35677777777
Q ss_pred CCCccccc
Q 038658 272 TDSLEEMP 279 (831)
Q Consensus 272 ~~~~~~~p 279 (831)
|. +..+|
T Consensus 272 N~-L~~Lp 278 (788)
T PRK15387 272 NP-LTHLP 278 (788)
T ss_pred Cc-hhhhh
Confidence 76 44444
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.56 E-value=8.1e-17 Score=156.46 Aligned_cols=100 Identities=26% Similarity=0.343 Sum_probs=65.9
Q ss_pred eEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCcccccccc-ccCcccccccccC
Q 038658 194 LRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNS 270 (831)
Q Consensus 194 L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~ 270 (831)
...++|..|.|+.|| .+|+.+++||.||||+|+|+.| |.+|..|.+|-.|-+.+++.++.+|.+ |++|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 455667777777774 5667777777777777777766 667777777777766665567777765 6777777777776
Q ss_pred CCCCccccc-CCCCCccccccccce
Q 038658 271 NTDSLEEMP-LGIGKLTCLQTLCNF 294 (831)
Q Consensus 271 ~~~~~~~~p-~~~~~L~~L~~L~~~ 294 (831)
-|. +.-++ ..+..|.+|..|..+
T Consensus 149 an~-i~Cir~~al~dL~~l~lLsly 172 (498)
T KOG4237|consen 149 ANH-INCIRQDALRDLPSLSLLSLY 172 (498)
T ss_pred hhh-hcchhHHHHHHhhhcchhccc
Confidence 665 33333 336666666666443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=1.2e-13 Score=154.10 Aligned_cols=196 Identities=24% Similarity=0.255 Sum_probs=89.6
Q ss_pred CcccEEeEcCCcCcccCCCCCCCcccEEEEccccCccccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccch
Q 038658 473 PKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQ 552 (831)
Q Consensus 473 ~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (831)
++|+.|.+.+ ++++ .+|..+++|+.|++++|.... .-...++|+.|++++|....
T Consensus 222 ~~L~~L~L~~-N~Lt-~LP~lp~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~---------------------- 276 (788)
T PRK15387 222 AHITTLVIPD-NNLT-SLPALPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTH---------------------- 276 (788)
T ss_pred cCCCEEEccC-CcCC-CCCCCCCCCcEEEecCCccCc-ccCcccccceeeccCCchhh----------------------
Confidence 3566666666 4555 566555666666666553211 11123455555555554221
Q ss_pred hhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEec
Q 038658 553 VLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLN 632 (831)
Q Consensus 553 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~ 632 (831)
++..+.+|+.|+++++. ++. .|. ..++|+.|++++ +++..++ .+|.+|+.|+++
T Consensus 277 ------Lp~lp~~L~~L~Ls~N~-Lt~---LP~----~p~~L~~LdLS~-N~L~~Lp-----------~lp~~L~~L~Ls 330 (788)
T PRK15387 277 ------LPALPSGLCKLWIFGNQ-LTS---LPV----LPPGLQELSVSD-NQLASLP-----------ALPSELCKLWAY 330 (788)
T ss_pred ------hhhchhhcCEEECcCCc-ccc---ccc----cccccceeECCC-CccccCC-----------CCcccccccccc
Confidence 11123445555555543 221 111 124555555555 2444332 122345555555
Q ss_pred cCCCCcccccccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcce
Q 038658 633 DCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTY 712 (831)
Q Consensus 633 ~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 712 (831)
+|.. +.+|.. ..+|+.|+|++| .++.+|. .+++|+.|++++| .++.+|.. ..+|+.|++++| .++.
T Consensus 331 ~N~L-~~LP~l---p~~Lq~LdLS~N-~Ls~LP~--lp~~L~~L~Ls~N-~L~~LP~l-----~~~L~~LdLs~N-~Lt~ 396 (788)
T PRK15387 331 NNQL-TSLPTL---PSGLQELSVSDN-QLASLPT--LPSELYKLWAYNN-RLTSLPAL-----PSGLKELIVSGN-RLTS 396 (788)
T ss_pred cCcc-cccccc---ccccceEecCCC-ccCCCCC--CCcccceehhhcc-ccccCccc-----ccccceEEecCC-cccC
Confidence 5442 234421 134555555554 4444543 2445555555543 34444421 234555555554 3444
Q ss_pred eccCCCCCCCceEEEecCCCCCcc
Q 038658 713 IAEVQLPPSLKNVVIRNCDNVRTL 736 (831)
Q Consensus 713 l~~~~~~~~L~~L~l~~c~~l~~l 736 (831)
+|. .+++|+.|+++++ .++.+
T Consensus 397 LP~--l~s~L~~LdLS~N-~LssI 417 (788)
T PRK15387 397 LPV--LPSELKELMVSGN-RLTSL 417 (788)
T ss_pred CCC--cccCCCEEEccCC-cCCCC
Confidence 442 2345555555553 34444
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=1.7e-16 Score=135.90 Aligned_cols=109 Identities=31% Similarity=0.411 Sum_probs=81.6
Q ss_pred ccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCcc-ccccccccC
Q 038658 182 HSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGL-RKLCAGMGN 260 (831)
Q Consensus 182 ~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~-~~lp~~i~~ 260 (831)
..+|+.+..+.+|++|++++|+|+++|.+++.+++||.|++.-|++..+|..|+.++-|++||+.+|+.. ..+|..|..
T Consensus 46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~ 125 (264)
T KOG0617|consen 46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY 125 (264)
T ss_pred eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhH
Confidence 3467777777777777777777777777777777777777777777777777777777777777776533 346777777
Q ss_pred cccccccccCCCCCcccccCCCCCccccccc
Q 038658 261 LIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 261 L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
|..|+.|+++.|. ...+|.++++|++||.|
T Consensus 126 m~tlralyl~dnd-fe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 126 MTTLRALYLGDND-FEILPPDVGKLTNLQIL 155 (264)
T ss_pred HHHHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence 7777777777776 66777777777777777
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2.7e-16 Score=134.61 Aligned_cols=105 Identities=30% Similarity=0.450 Sum_probs=91.8
Q ss_pred ccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccc
Q 038658 186 PKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLH 265 (831)
Q Consensus 186 ~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~ 265 (831)
+.++.+.++..|-|++|.++.+|..|..+++|++|++++|+|+++|.+++.+++|++|++.-|+ +..+|.+||.++.|+
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 4566788889999999999999999999999999999999999999999999999999999865 778999999999999
Q ss_pred ccccCCCCCcc-cccCCCCCccccccc
Q 038658 266 HLNNSNTDSLE-EMPLGIGKLTCLQTL 291 (831)
Q Consensus 266 ~L~l~~~~~~~-~~p~~~~~L~~L~~L 291 (831)
+||+.+|+... .+|..|-.++.|+.|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHH
Confidence 99999987443 567666666666655
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.50 E-value=2.4e-14 Score=163.33 Aligned_cols=107 Identities=33% Similarity=0.415 Sum_probs=91.6
Q ss_pred CCcceEEEEeCCCC--ccccCcc-ccCCCCCceeecCCC-CCCccchhhhccCCccEEeecCcCccccccccccCccccc
Q 038658 190 KLQRLRVFSLCGYW--ISELPDS-IGDLRYLRYLNLSGT-QIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLH 265 (831)
Q Consensus 190 ~l~~L~~L~L~~~~--i~~lp~~-~~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~ 265 (831)
..+.|++|-+.+|. +..++.. |..++.||+|||++| .+..+|++|++|.+||+|++++ +.+..+|.++++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhh
Confidence 45579999999986 6677544 688999999999987 5789999999999999999999 45889999999999999
Q ss_pred ccccCCCCCcccccCCCCCccccccccceEec
Q 038658 266 HLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVG 297 (831)
Q Consensus 266 ~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~ 297 (831)
+|++..+.....+|..+..|++||+|..+...
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 99999998777777667779999999655443
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=1.5e-15 Score=147.83 Aligned_cols=109 Identities=28% Similarity=0.328 Sum_probs=92.7
Q ss_pred cccccccc-CCcceEEEEeCCCCcccc-CccccCCCCCceeecCC-CCCCccch-hhhccCCccEEeecCcCcccccccc
Q 038658 182 HSILPKLF-KLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSG-TQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAG 257 (831)
Q Consensus 182 ~~~~~~~~-~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~-~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~ 257 (831)
..+|+..| .+++||.|||++|.|+.| |++|..+..|-.|-+.+ |+|+.+|+ .|++|..|+.|.+.-|...-...+.
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 45677777 999999999999999999 99999999988877776 89999995 6799999999999987655555667
Q ss_pred ccCcccccccccCCCCCcccccC-CCCCccccccc
Q 038658 258 MGNLIKLHHLNNSNTDSLEEMPL-GIGKLTCLQTL 291 (831)
Q Consensus 258 i~~L~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L 291 (831)
+..|++|..|.+..|. +..++. .+..+..++++
T Consensus 160 l~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTL 193 (498)
T ss_pred HHHhhhcchhcccchh-hhhhccccccchhccchH
Confidence 9999999999999997 777776 48888888877
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=5e-13 Score=150.28 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=48.2
Q ss_pred ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCC
Q 038658 193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNT 272 (831)
Q Consensus 193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~ 272 (831)
+..+|+++++.++.+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++|. +..+|..+. .+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCC
Confidence 34566666666666665543 456666666666666665543 366666666654 445565443 35666666666
Q ss_pred CCcccccCCC
Q 038658 273 DSLEEMPLGI 282 (831)
Q Consensus 273 ~~~~~~p~~~ 282 (831)
. +..+|..+
T Consensus 252 ~-L~~LP~~l 260 (754)
T PRK15370 252 R-ITELPERL 260 (754)
T ss_pred c-cCcCChhH
Confidence 5 44555443
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=4.8e-12 Score=142.45 Aligned_cols=90 Identities=16% Similarity=0.286 Sum_probs=72.3
Q ss_pred cceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658 192 QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN 271 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 271 (831)
+.|+.|+|++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|. +..+|..+. .+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcC
Confidence 468999999999999988765 589999999999999998664 479999999976 667887764 5899999998
Q ss_pred CCCcccccCCCCCccccccc
Q 038658 272 TDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 272 ~~~~~~~p~~~~~L~~L~~L 291 (831)
|. +..+|..+. .+|+.|
T Consensus 272 N~-L~~LP~~l~--~sL~~L 288 (754)
T PRK15370 272 NK-ISCLPENLP--EELRYL 288 (754)
T ss_pred Cc-cCccccccC--CCCcEE
Confidence 87 667776553 345555
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.08 E-value=2.1e-12 Score=127.26 Aligned_cols=232 Identities=19% Similarity=0.263 Sum_probs=104.1
Q ss_pred CcccEEeEcCCcCccc----CCCCCCCcccEEEEccccCccccC-----CCCCccceEEEcCCCCccccccccccCCCCc
Q 038658 473 PKLRELEVIGCSKLKG----TFPEHLPALEMLVIGGCEELLVSI-----TSLPALSKLEIGGCKKVVWRSETDHLGSQNS 543 (831)
Q Consensus 473 ~~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~~l~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 543 (831)
..|+.|.+++|..... .+-...|++++|.+.+|..++... ..++.|+.+++..|..++.....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk-------- 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK-------- 209 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH--------
Confidence 3578888888754331 222345666666666666443221 12555666666555544422110
Q ss_pred eeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhccc
Q 038658 544 VVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELS 623 (831)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~ 623 (831)
.+...+++|++|.++-|+..+. .....+..+...++.+...+|..+.. +. +..+....
T Consensus 210 --------------~la~gC~kL~~lNlSwc~qi~~--~gv~~~~rG~~~l~~~~~kGC~e~~l---e~---l~~~~~~~ 267 (483)
T KOG4341|consen 210 --------------YLAEGCRKLKYLNLSWCPQISG--NGVQALQRGCKELEKLSLKGCLELEL---EA---LLKAAAYC 267 (483)
T ss_pred --------------HHHHhhhhHHHhhhccCchhhc--CcchHHhccchhhhhhhhcccccccH---HH---HHHHhccC
Confidence 1122355555555555554432 01112223344444444444433221 10 11111111
Q ss_pred CCccEEEeccCCCCcccc--cccCCCCCCCeEEEecCCCCccccCCCC---CCCccEEEEecCCCCcccccccccCCCCC
Q 038658 624 CRLEYLLLNDCKGLVKLP--QSLLSLSSLREIEIYNCSSFVSFPEVAL---PSKVRSISIHRCDALKSLPEAWMCDANLS 698 (831)
Q Consensus 624 ~~L~~L~l~~~~~~~~l~--~~l~~l~~L~~L~L~~~~~l~~l~~~~~---~~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 698 (831)
.-+-++++.+|..++... ..-..+..|+.|+.++|..+++.+-+.+ .++|+.|.+++|..++..-....+.+++.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 123344444554443321 1112345566666666655444332222 45666666666665555443333344556
Q ss_pred cCeEEEccCCCcceec---cCCCCCCCceEEEecCCCCC
Q 038658 699 LEILTISRCHSLTYIA---EVQLPPSLKNVVIRNCDNVR 734 (831)
Q Consensus 699 L~~L~l~~c~~l~~l~---~~~~~~~L~~L~l~~c~~l~ 734 (831)
|+.+++.+|..+.+-. .....+.|+.+.++.|..++
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELIT 386 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhh
Confidence 6666666554433220 00223455555555555444
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.97 E-value=2.7e-11 Score=127.13 Aligned_cols=84 Identities=25% Similarity=0.269 Sum_probs=52.8
Q ss_pred CCcceEEEEeCCCCcc-----ccCccccCCCCCceeecCCCCCCc-------cchhhhccCCccEEeecCcCcccccccc
Q 038658 190 KLQRLRVFSLCGYWIS-----ELPDSIGDLRYLRYLNLSGTQIRT-------LPESVNKLYNLHTLSLEGCRGLRKLCAG 257 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~-----~lp~~~~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~l~~~~~~~~lp~~ 257 (831)
.+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|......+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 5666777777777763 345555666777777777766552 2345566677777777776654444444
Q ss_pred ccCccc---ccccccCCCC
Q 038658 258 MGNLIK---LHHLNNSNTD 273 (831)
Q Consensus 258 i~~L~~---L~~L~l~~~~ 273 (831)
+..+.+ |++|++++|.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 101 LESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHhccCcccEEEeeCCc
Confidence 544444 7777777665
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.96 E-value=8.2e-12 Score=123.24 Aligned_cols=110 Identities=22% Similarity=0.276 Sum_probs=64.0
Q ss_pred ceeEEEEecCCCCCCCC---CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCC
Q 038658 392 NLVTLKFEDCGMCTTLP---SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQG 468 (831)
Q Consensus 392 ~L~~L~l~~~~~~~~~~---~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 468 (831)
.|+.|.+.+|.-.+.-+ ....+|++++|.+.+|..+++..-...+ ..+++|+.|.+..|.+++.......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla----~~C~~l~~l~L~~c~~iT~~~Lk~l--- 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA----RYCRKLRHLNLHSCSSITDVSLKYL--- 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH----HhcchhhhhhhcccchhHHHHHHHH---
Confidence 46666777666554433 2356778888877777655443211111 2366777777777666655443322
Q ss_pred CCCCCcccEEeEcCCcCccc----CCCCCCCcccEEEEccccCc
Q 038658 469 VEGFPKLRELEVIGCSKLKG----TFPEHLPALEMLVIGGCEEL 508 (831)
Q Consensus 469 ~~~~~~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~~l 508 (831)
..++++|++|+++.|+.+++ .+..+...++.+..++|...
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence 34678888888888877764 22334445555555555543
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=7.9e-11 Score=123.63 Aligned_cols=117 Identities=17% Similarity=0.055 Sum_probs=72.4
Q ss_pred ccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccc-------cCccccCCCCCceeecCCCCCC-
Q 038658 157 DLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISE-------LPDSIGDLRYLRYLNLSGTQIR- 228 (831)
Q Consensus 157 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-------lp~~~~~l~~Lr~L~L~~~~i~- 228 (831)
.+..+.+++.+.+.+..-.. .-...++..+...+.++.|+++++.+.. ++..+..+.+|++|++++|.+.
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~--~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGE--EAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHhhccEEeecCCCCcH--HHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 34455567777554432100 0012244444567778888888877652 2455667888888888888876
Q ss_pred ccchhhhccCC---ccEEeecCcCccc----cccccccCc-ccccccccCCCCCc
Q 038658 229 TLPESVNKLYN---LHTLSLEGCRGLR----KLCAGMGNL-IKLHHLNNSNTDSL 275 (831)
Q Consensus 229 ~lp~~i~~L~~---L~~L~l~~~~~~~----~lp~~i~~L-~~L~~L~l~~~~~~ 275 (831)
..+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.+.
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 44555555555 8888888876431 233445666 78888888888733
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=1.5e-10 Score=118.77 Aligned_cols=180 Identities=22% Similarity=0.306 Sum_probs=122.2
Q ss_pred ccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCc
Q 038658 182 HSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNL 261 (831)
Q Consensus 182 ~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L 261 (831)
.++|..+..+-.|..+.|..|.+..+|.+++++..|.+|||+.|++..+|..++.|+ |++|-+++| .++.+|.+++.+
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~ 165 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLL 165 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccc
Confidence 456666667777777888888888888888888888888888888888888777765 778878775 477788888877
Q ss_pred ccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEee
Q 038658 262 IKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWT 341 (831)
Q Consensus 262 ~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~ 341 (831)
..|.+|+.+.|. +..+|..++.|++|+.|... .|
T Consensus 166 ~tl~~ld~s~ne-i~slpsql~~l~slr~l~vr---------------------------------------------Rn 199 (722)
T KOG0532|consen 166 PTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVR---------------------------------------------RN 199 (722)
T ss_pred hhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHh---------------------------------------------hh
Confidence 888888888887 66777777777777777211 11
Q ss_pred cCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCC---CCCCCCcce
Q 038658 342 NSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPS---VGQLPSLKH 418 (831)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~---l~~l~~L~~ 418 (831)
.. ...++.+. .-.|..|+++.|++..+|..+.. ++.|++|.|.+|.+...... -|...--++
T Consensus 200 ~l------------~~lp~El~-~LpLi~lDfScNkis~iPv~fr~--m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKy 264 (722)
T KOG0532|consen 200 HL------------EDLPEELC-SLPLIRLDFSCNKISYLPVDFRK--MRHLQVLQLENNPLQSPPAQICEKGKVHIFKY 264 (722)
T ss_pred hh------------hhCCHHHh-CCceeeeecccCceeecchhhhh--hhhheeeeeccCCCCCChHHHHhccceeeeee
Confidence 10 01122222 12466777777777777877765 77888888888776543322 233344455
Q ss_pred EEeccc
Q 038658 419 LAVRRM 424 (831)
Q Consensus 419 L~L~~~ 424 (831)
|+...|
T Consensus 265 L~~qA~ 270 (722)
T KOG0532|consen 265 LSTQAC 270 (722)
T ss_pred ecchhc
Confidence 666555
No 28
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.79 E-value=2.6e-08 Score=102.00 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=7.6
Q ss_pred ccEEeeecCCCcccch
Q 038658 594 LKRLTIGWCPTLQSLV 609 (831)
Q Consensus 594 L~~L~l~~c~~l~~l~ 609 (831)
|++|.+++|++++.+|
T Consensus 74 LtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 74 LTEITIENCNNLTTLP 89 (426)
T ss_pred CcEEEccCCCCcccCC
Confidence 4555555554444443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=4.3e-09 Score=95.98 Aligned_cols=131 Identities=27% Similarity=0.278 Sum_probs=52.7
Q ss_pred cccccCCcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhh
Q 038658 156 EDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESV 234 (831)
Q Consensus 156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i 234 (831)
+...+..++|.|.+.+. .+ .....+. .+.+|++|+|++|.|+.++ .+..+++|++|++++|.|+++++.+
T Consensus 13 ~~~~n~~~~~~L~L~~n------~I--~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGN------QI--STIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred ccccccccccccccccc------cc--ccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 34445556666644332 11 1234454 5788999999999999884 6888999999999999999997666
Q ss_pred -hccCCccEEeecCcCcccccc--ccccCcccccccccCCCCCcccccC----CCCCccccccccceEec
Q 038658 235 -NKLYNLHTLSLEGCRGLRKLC--AGMGNLIKLHHLNNSNTDSLEEMPL----GIGKLTCLQTLCNFVVG 297 (831)
Q Consensus 235 -~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~~~~L~~L~~L~~~~~~ 297 (831)
..+++|++|++++|. +..+- ..+..+++|++|++.+|. +...+. -+..+++|+.|+...+.
T Consensus 84 ~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred HHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 478999999999875 43332 347788999999999998 333332 26778888888655444
No 30
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.77 E-value=2e-08 Score=102.72 Aligned_cols=160 Identities=23% Similarity=0.410 Sum_probs=106.8
Q ss_pred CCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEE
Q 038658 624 CRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILT 703 (831)
Q Consensus 624 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~ 703 (831)
.+++.|++++| .++.+|. -.++|++|.+++|..++.+|. .++++|+.|.+++|..+..+| .+|+.|+
T Consensus 52 ~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP--------~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLP--------ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCcccccccc--------cccceEE
Confidence 57999999999 5777772 235799999999999988885 357899999999998887765 3577777
Q ss_pred EccCCCcceeccCCCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCCcccccchhhhhhhhhccc
Q 038658 704 ISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLE 783 (831)
Q Consensus 704 l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~ 783 (831)
+.+ .....+. .+|++|++|.+.+++.......+..+ -++ |++|+|++|..+.. |
T Consensus 119 L~~-n~~~~L~--~LPssLk~L~I~~~n~~~~~~lp~~L-------PsS--Lk~L~Is~c~~i~L--------------P 172 (426)
T PRK15386 119 IKG-SATDSIK--NVPNGLTSLSINSYNPENQARIDNLI-------SPS--LKTLSLTGCSNIIL--------------P 172 (426)
T ss_pred eCC-CCCcccc--cCcchHhheecccccccccccccccc-------CCc--ccEEEecCCCcccC--------------c
Confidence 764 3333333 56788999998654422111112111 134 99999999986642 3
Q ss_pred cCCCCCCcCeeEEccCC--chhhhhhcCCCCCCCceEEecCCCCC
Q 038658 784 VGNLPPSLKSLEVLSCS--KLESIAERLDNNTSLETITIISCKNL 826 (831)
Q Consensus 784 ~~~l~~~L~~L~l~~~~--~l~~l~~~~~~l~~L~~L~i~~C~~l 826 (831)
..+|.+|+.|.++.+. .++.....+. +++ .|.+.+|-++
T Consensus 173 -~~LP~SLk~L~ls~n~~~sLeI~~~sLP--~nl-~L~f~n~lkL 213 (426)
T PRK15386 173 -EKLPESLQSITLHIEQKTTWNISFEGFP--DGL-DIDLQNSVLL 213 (426)
T ss_pred -ccccccCcEEEecccccccccCcccccc--ccc-Eechhhhccc
Confidence 4478899999998653 1111111121 344 7777777543
No 31
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.77 E-value=7.3e-10 Score=113.99 Aligned_cols=69 Identities=35% Similarity=0.647 Sum_probs=56.5
Q ss_pred CchhcccccCcCCCC---CCCCchHHHHhccccCChhhhhHhhhhCCCCCCCccCHHHHHHHHHHcCCcCCC
Q 038658 1 DWEGVLSCNIWDLPE---ERCDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHR 69 (831)
Q Consensus 1 ~W~~~l~~~~~~~~~---~~~~i~~~L~lSY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~wi~~G~i~~~ 69 (831)
+|+++++...+...+ ....++.++++||+.||+++|.||+|||+||+++.|+++.|+++|++||||...
T Consensus 214 ~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 214 EWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp SHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 588888765444322 346799999999999999999999999999999999999999999999999764
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.2e-08 Score=110.13 Aligned_cols=102 Identities=32% Similarity=0.474 Sum_probs=87.0
Q ss_pred ccCCcceEEEEeCCCCccccCccccCCC-CCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccc
Q 038658 188 LFKLQRLRVFSLCGYWISELPDSIGDLR-YLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHH 266 (831)
Q Consensus 188 ~~~l~~L~~L~L~~~~i~~lp~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 266 (831)
+..++.++.|++.++.+.++|.....+. +|++|++++|.+..+|..++.+++|+.|++++|. +..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence 3356789999999999999988888885 9999999999999998889999999999999975 7788887778999999
Q ss_pred cccCCCCCcccccCCCCCccccccc
Q 038658 267 LNNSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 267 L~l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
|++++|. +..+|..++.+..|++|
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l 214 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEEL 214 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhh
Confidence 9999998 78888777666667776
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.67 E-value=9.5e-10 Score=113.05 Aligned_cols=173 Identities=24% Similarity=0.234 Sum_probs=141.1
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
.+..-...||+.|++..+|..++.+..|..|.|+.|.|..+|..+++|..|.+||++.|. +..+|..+..|+ |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEE
Confidence 566667889999999999999999999999999999999999999999999999999965 788999988885 899999
Q ss_pred CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658 270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL 349 (831)
Q Consensus 270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~ 349 (831)
++|+ ++.+|.+++.+..|..|... .|..
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s---------------------------------------------~nei------ 178 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVS---------------------------------------------KNEI------ 178 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhh---------------------------------------------hhhh------
Confidence 9998 89999999977766666221 1111
Q ss_pred hhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658 350 REAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 425 (831)
...+..+..+..|+.|.+..|....+|..+.. -.|.+||++.|++....-.+.+|..|++|.|.+++
T Consensus 179 ------~slpsql~~l~slr~l~vrRn~l~~lp~El~~---LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 179 ------QSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS---LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ------hhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC---CceeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 01223345556788888999999999988763 56899999988876544489999999999998765
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=8e-09 Score=94.19 Aligned_cols=81 Identities=35% Similarity=0.480 Sum_probs=29.5
Q ss_pred CCcceEEEEeCCCCccccCcccc-CCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccc-cCccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIG-DLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGM-GNLIKLHHL 267 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i-~~L~~L~~L 267 (831)
+...++.|+|++|.|+.+ +.++ .+.+|++|++++|.|+.++ .+..+++|++|++++|. +..++.++ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEE
Confidence 556789999999999988 3565 6899999999999999985 68889999999999976 66676555 468999999
Q ss_pred ccCCCC
Q 038658 268 NNSNTD 273 (831)
Q Consensus 268 ~l~~~~ 273 (831)
++++|.
T Consensus 94 ~L~~N~ 99 (175)
T PF14580_consen 94 YLSNNK 99 (175)
T ss_dssp E-TTS-
T ss_pred ECcCCc
Confidence 999997
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.6e-08 Score=99.59 Aligned_cols=84 Identities=21% Similarity=0.158 Sum_probs=44.3
Q ss_pred CCcceEEEEeCCCCccccCccc--cCCCCCceeecCCCCCC--ccchhhhccCCccEEeecCcCccccccccccCccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSI--GDLRYLRYLNLSGTQIR--TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLH 265 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~--~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~ 265 (831)
.+++|+.|+|+.|.+....++. ..+.+|+.|.|+.|.++ ++-.....+++|+.|+|.+|..+..-.....-+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 5666666666666654332111 34566666666666655 3333344556666666666542222222234455666
Q ss_pred ccccCCCC
Q 038658 266 HLNNSNTD 273 (831)
Q Consensus 266 ~L~l~~~~ 273 (831)
.|+|++|.
T Consensus 250 ~LdLs~N~ 257 (505)
T KOG3207|consen 250 ELDLSNNN 257 (505)
T ss_pred hccccCCc
Confidence 66666665
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=9e-08 Score=71.36 Aligned_cols=58 Identities=29% Similarity=0.505 Sum_probs=44.8
Q ss_pred cceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcC
Q 038658 192 QRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCR 249 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~ 249 (831)
++|++|++++|.++.+| ..|..+++|++|++++|.++.+| ..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 36778888888888875 56678888888888888888775 466888888888888764
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.48 E-value=1.4e-07 Score=101.93 Aligned_cols=125 Identities=26% Similarity=0.347 Sum_probs=100.2
Q ss_pred cccCCcceEEccccccCCCcccccccccccccCCc-ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhc
Q 038658 158 LYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQ-RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK 236 (831)
Q Consensus 158 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~ 236 (831)
....+.+..|.+... ....+++....+. +|+.|++++|.+..+|..+..+++|+.|++++|++.++|...+.
T Consensus 112 ~~~~~~l~~L~l~~n-------~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 112 LLELTNLTSLDLDNN-------NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred hhcccceeEEecCCc-------ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 334456666654332 2345666666664 99999999999999998899999999999999999999998889
Q ss_pred cCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccc
Q 038658 237 LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 237 L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
+.+|+.|++++|. +..+|..++.+..|+.|.+++|. ....+..++++.++..+
T Consensus 185 ~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 185 LSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 9999999999965 88899888888889999999996 44455566666666665
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=1.8e-07 Score=105.66 Aligned_cols=93 Identities=26% Similarity=0.350 Sum_probs=84.7
Q ss_pred ceEEEEeCCCCcc-ccCccccCCCCCceeecCCCCCC-ccchhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658 193 RLRVFSLCGYWIS-ELPDSIGDLRYLRYLNLSGTQIR-TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS 270 (831)
Q Consensus 193 ~L~~L~L~~~~i~-~lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 270 (831)
.++.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|...+.+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999987 67999999999999999999997 889999999999999999998888899999999999999999
Q ss_pred CCCCcccccCCCCCc
Q 038658 271 NTDSLEEMPLGIGKL 285 (831)
Q Consensus 271 ~~~~~~~~p~~~~~L 285 (831)
+|.+.+.+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 999888999877653
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=2.6e-07 Score=104.27 Aligned_cols=103 Identities=27% Similarity=0.397 Sum_probs=88.8
Q ss_pred cccccccccccccCCcceEEEEeCCCCcc-ccCccccCCCCCceeecCCCCCC-ccchhhhccCCccEEeecCcCccccc
Q 038658 177 QGFLAHSILPKLFKLQRLRVFSLCGYWIS-ELPDSIGDLRYLRYLNLSGTQIR-TLPESVNKLYNLHTLSLEGCRGLRKL 254 (831)
Q Consensus 177 ~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~l 254 (831)
.+.+.+.+|..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|++. .+|..++++++|++|+|++|...+.+
T Consensus 427 ~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~i 506 (623)
T PLN03150 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506 (623)
T ss_pred CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccC
Confidence 34566778888889999999999999987 77999999999999999999998 78999999999999999999988899
Q ss_pred cccccCc-ccccccccCCCCCccccc
Q 038658 255 CAGMGNL-IKLHHLNNSNTDSLEEMP 279 (831)
Q Consensus 255 p~~i~~L-~~L~~L~l~~~~~~~~~p 279 (831)
|..++.+ .++..+++.+|..+...|
T Consensus 507 P~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 507 PAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ChHHhhccccCceEEecCCccccCCC
Confidence 9988764 567788888886544443
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=2.1e-08 Score=94.82 Aligned_cols=82 Identities=27% Similarity=0.305 Sum_probs=54.0
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
..+.|+.|||++|.|+.+-+++.-++.+|+|++|+|.|..+-. +..|++|+.|||++|. +..+-..=.+|-|.+.|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence 4556777777777777777777777777777777777776633 6777777777777754 3333332335556666667
Q ss_pred CCCC
Q 038658 270 SNTD 273 (831)
Q Consensus 270 ~~~~ 273 (831)
++|.
T Consensus 360 a~N~ 363 (490)
T KOG1259|consen 360 AQNK 363 (490)
T ss_pred hhhh
Confidence 6665
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=5e-08 Score=97.56 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=77.0
Q ss_pred CCCCcccEEeEcCCcCcccCCC-----CCCCcccEEEEccccC-----ccccCCCCCccceEEEcCCCCccccccccccC
Q 038658 470 EGFPKLRELEVIGCSKLKGTFP-----EHLPALEMLVIGGCEE-----LLVSITSLPALSKLEIGGCKKVVWRSETDHLG 539 (831)
Q Consensus 470 ~~~~~L~~L~l~~c~~l~~~~p-----~~l~~L~~L~l~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 539 (831)
..+.+|+.+.+.+|+ .. ..+ ..+++++.|+++.|-- +-.....+|+|+.|+++.|......+.
T Consensus 118 sn~kkL~~IsLdn~~-V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s----- 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS----- 190 (505)
T ss_pred hhHHhhhheeecCcc-cc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-----
Confidence 357888888898863 32 222 3677788888877641 112344577777777777763321100
Q ss_pred CCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhh
Q 038658 540 SQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQL 619 (831)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l 619 (831)
..-..+++|+.|.++.|.-- |.........+|+|+.|++...+.+... ...+
T Consensus 191 ------------------~~~~~l~~lK~L~l~~CGls---~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~------ 242 (505)
T KOG3207|consen 191 ------------------NTTLLLSHLKQLVLNSCGLS---WKDVQWILLTFPSLEVLYLEANEIILIK-ATST------ 242 (505)
T ss_pred ------------------cchhhhhhhheEEeccCCCC---HHHHHHHHHhCCcHHHhhhhccccccee-cchh------
Confidence 01113566666666666521 1112222345566666666553211110 0111
Q ss_pred hcccCCccEEEeccCCCCccc-ccccCCCCCCCeEEEecC
Q 038658 620 CELSCRLEYLLLNDCKGLVKL-PQSLLSLSSLREIEIYNC 658 (831)
Q Consensus 620 ~~~~~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~L~~~ 658 (831)
..++.|+.|+|++|+.+..- ....+.++.|+.|+++.|
T Consensus 243 -~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 243 -KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred -hhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 11234666666666544321 123445566666666655
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=2.6e-07 Score=68.88 Aligned_cols=58 Identities=33% Similarity=0.442 Sum_probs=50.8
Q ss_pred CCCceeecCCCCCCccch-hhhccCCccEEeecCcCcccccc-ccccCcccccccccCCCC
Q 038658 215 RYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLC-AGMGNLIKLHHLNNSNTD 273 (831)
Q Consensus 215 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~ 273 (831)
++|++|++++|+++.+|. .+.++++|++|++++|. +..+| ..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999985 77999999999999877 45554 568999999999999986
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=1.1e-06 Score=59.53 Aligned_cols=38 Identities=32% Similarity=0.491 Sum_probs=17.2
Q ss_pred ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCcc
Q 038658 193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTL 230 (831)
Q Consensus 193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l 230 (831)
+|++|++++|.|+.+|..+++|++|++|++++|.|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34444555554444444444444444444444444433
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2.1e-08 Score=94.89 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=49.4
Q ss_pred CccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCC---CCCccEEEEecCCCCcccccccccCCCCCcCe
Q 038658 625 RLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVAL---PSKVRSISIHRCDALKSLPEAWMCDANLSLEI 701 (831)
Q Consensus 625 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~---~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 701 (831)
.|+.|.+.++.....+...+..-.+|+.|+|+.|..++....... ++.|.+|+++.|...+..-......--+.|..
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ 290 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence 455555555554444444455555566666666655443321111 45555555555544333322111111334555
Q ss_pred EEEccCCCcceeccC----CCCCCCceEEEecCCCCC
Q 038658 702 LTISRCHSLTYIAEV----QLPPSLKNVVIRNCDNVR 734 (831)
Q Consensus 702 L~l~~c~~l~~l~~~----~~~~~L~~L~l~~c~~l~ 734 (831)
|+++||...-..... .-.|+|.+|++++|..++
T Consensus 291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 555554322111110 123455555555555554
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.14 E-value=3.3e-07 Score=89.27 Aligned_cols=255 Identities=20% Similarity=0.235 Sum_probs=141.6
Q ss_pred cccCCcceEEEEeCCCCcc-----ccCccccCCCCCceeecCCC---C-CCccchh-------hhccCCccEEeecCcCc
Q 038658 187 KLFKLQRLRVFSLCGYWIS-----ELPDSIGDLRYLRYLNLSGT---Q-IRTLPES-------VNKLYNLHTLSLEGCRG 250 (831)
Q Consensus 187 ~~~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~Lr~L~L~~~---~-i~~lp~~-------i~~L~~L~~L~l~~~~~ 250 (831)
....+..++.++|++|.+. .+-..+.+.++||.-++++- + ..++|+. +-..++|++||||.|-.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3346778899999999875 24455677789999999874 2 2255654 34556899999998754
Q ss_pred ccccccc----ccCcccccccccCCCCCcccccCC-CCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccc
Q 038658 251 LRKLCAG----MGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENA 325 (831)
Q Consensus 251 ~~~lp~~----i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~ 325 (831)
-..-++. +.....|++|+|.+|. ++....+ ++. .|..| .. ..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l----------------~~--------------~k 151 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFEL----------------AV--------------NK 151 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHH----------------HH--------------Hh
Confidence 3333332 5677889999998887 4322211 111 11111 00 01
Q ss_pred cccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCC-----ccCCCCCCCceeEEEEec
Q 038658 326 QLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFP-----IWLGDSSFSNLVTLKFED 400 (831)
Q Consensus 326 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-----~~~~~~~~~~L~~L~l~~ 400 (831)
.....+.|+++....|...+... ...-..++.++.|+.+.+..|++..-- ..+. .+++|+.|++.+
T Consensus 152 k~~~~~~Lrv~i~~rNrlen~ga-------~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~--~~~~LevLdl~D 222 (382)
T KOG1909|consen 152 KAASKPKLRVFICGRNRLENGGA-------TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE--HCPHLEVLDLRD 222 (382)
T ss_pred ccCCCcceEEEEeeccccccccH-------HHHHHHHHhccccceEEEecccccCchhHHHHHHHH--hCCcceeeeccc
Confidence 12334566677666665443311 112233555577777777776643211 1111 367788888888
Q ss_pred CCCCCCC----C-CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcc
Q 038658 401 CGMCTTL----P-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKL 475 (831)
Q Consensus 401 ~~~~~~~----~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L 475 (831)
|.+...- . .+..+++|+.|++.+|.. +.-+...+.......+|+|+.|.+.+...-..-. ..........|.|
T Consensus 223 Ntft~egs~~LakaL~s~~~L~El~l~dcll-~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~-~~la~~~~ek~dL 300 (382)
T KOG1909|consen 223 NTFTLEGSVALAKALSSWPHLRELNLGDCLL-ENEGAIAFVDALKESAPSLEVLELAGNEITRDAA-LALAACMAEKPDL 300 (382)
T ss_pred chhhhHHHHHHHHHhcccchheeeccccccc-ccccHHHHHHHHhccCCCCceeccCcchhHHHHH-HHHHHHHhcchhh
Confidence 7765321 1 456677888888887742 2222111111112337888888877642111000 0000013347899
Q ss_pred cEEeEcCCcCc
Q 038658 476 RELEVIGCSKL 486 (831)
Q Consensus 476 ~~L~l~~c~~l 486 (831)
+.|++++| .+
T Consensus 301 ~kLnLngN-~l 310 (382)
T KOG1909|consen 301 EKLNLNGN-RL 310 (382)
T ss_pred HHhcCCcc-cc
Confidence 99999985 44
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.13 E-value=3.1e-07 Score=87.15 Aligned_cols=77 Identities=31% Similarity=0.284 Sum_probs=58.4
Q ss_pred cCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccc
Q 038658 212 GDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 212 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
.-.+.|..||||+|.|+.+.+++.-++.++.|++++|. +..+. .+..|.+|.+||+++|. +.++-..-.+|.+.++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence 34567999999999999999999999999999999976 44443 38889999999999997 54443333344444444
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1e-07 Score=90.43 Aligned_cols=181 Identities=22% Similarity=0.246 Sum_probs=111.6
Q ss_pred CCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccc--
Q 038658 564 PKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLP-- 641 (831)
Q Consensus 564 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~-- 641 (831)
..|+.|++++-.-... .-...+..+..|+.|.+.+. .+..-... .+. --.+|+.|+++.|..++...
T Consensus 185 sRlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~-~LdD~I~~------~iA-kN~~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGL-RLDDPIVN------TIA-KNSNLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred hhhHHhhcchhheeHH---HHHHHHHHHHhhhhcccccc-ccCcHHHH------HHh-ccccceeeccccccccchhHHH
Confidence 3588888876442221 12234566777888887773 33321100 001 11479999999998876532
Q ss_pred cccCCCCCCCeEEEecCCCCccccCCC---CCCCccEEEEecCCCC---cccccccccCCCCCcCeEEEccCCCcceec-
Q 038658 642 QSLLSLSSLREIEIYNCSSFVSFPEVA---LPSKVRSISIHRCDAL---KSLPEAWMCDANLSLEILTISRCHSLTYIA- 714 (831)
Q Consensus 642 ~~l~~l~~L~~L~L~~~~~l~~l~~~~---~~~~L~~L~l~~c~~l---~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~- 714 (831)
-.+.+|+.|.+|+|+-|...+..-... .-++|..|+++||..- ..+.... ..+|+|.+||+++|..++.--
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~--~rcp~l~~LDLSD~v~l~~~~~ 331 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV--RRCPNLVHLDLSDSVMLKNDCF 331 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH--HhCCceeeeccccccccCchHH
Confidence 346789999999999996554432211 2578999999998532 1222222 348999999999998776411
Q ss_pred -cCCCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCC
Q 038658 715 -EVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPS 765 (831)
Q Consensus 715 -~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~ 765 (831)
+..-++.|++|.++.|..+- |..+-+. ...|+ |.+|++.+|-.
T Consensus 332 ~~~~kf~~L~~lSlsRCY~i~----p~~~~~l--~s~ps--l~yLdv~g~vs 375 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCYDII----PETLLEL--NSKPS--LVYLDVFGCVS 375 (419)
T ss_pred HHHHhcchheeeehhhhcCCC----hHHeeee--ccCcc--eEEEEeccccC
Confidence 11335789999999997663 3322220 01556 89999988743
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=4.4e-06 Score=56.58 Aligned_cols=39 Identities=36% Similarity=0.530 Sum_probs=31.4
Q ss_pred CCCceeecCCCCCCccchhhhccCCccEEeecCcCccccc
Q 038658 215 RYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKL 254 (831)
Q Consensus 215 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~l 254 (831)
++|++|++++|+|+.+|..+++|++|++|++++|. +..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 47899999999999998889999999999999975 4444
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.98 E-value=6.2e-07 Score=87.45 Aligned_cols=247 Identities=21% Similarity=0.263 Sum_probs=144.1
Q ss_pred ccccCCCCCceeecCCCCCC-----ccchhhhccCCccEEeecCc---Ccccccccc-------ccCcccccccccCCCC
Q 038658 209 DSIGDLRYLRYLNLSGTQIR-----TLPESVNKLYNLHTLSLEGC---RGLRKLCAG-------MGNLIKLHHLNNSNTD 273 (831)
Q Consensus 209 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~---~~~~~lp~~-------i~~L~~L~~L~l~~~~ 273 (831)
+.+..+..+.+++|++|.+. .+-+.+.+.++|+.-++++- +....+|+. +-..++|+.|+||.|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34567788999999999886 34566778889999998862 112234443 3455699999999997
Q ss_pred CcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChh--h
Q 038658 274 SLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLR--E 351 (831)
Q Consensus 274 ~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~ 351 (831)
+-..-+++++.+ ++.+..|++|.+.+|......... .
T Consensus 104 ~G~~g~~~l~~l-----------------------------------------l~s~~~L~eL~L~N~Glg~~ag~~l~~ 142 (382)
T KOG1909|consen 104 FGPKGIRGLEEL-----------------------------------------LSSCTDLEELYLNNCGLGPEAGGRLGR 142 (382)
T ss_pred cCccchHHHHHH-----------------------------------------HHhccCHHHHhhhcCCCChhHHHHHHH
Confidence 433333332111 222344445555444332110000 0
Q ss_pred hhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCC---CCCCceeEEEEecCCCCCC-CC----CCCCCCCcceEEecc
Q 038658 352 AETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGD---SSFSNLVTLKFEDCGMCTT-LP----SVGQLPSLKHLAVRR 423 (831)
Q Consensus 352 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~---~~~~~L~~L~l~~~~~~~~-~~----~l~~l~~L~~L~L~~ 423 (831)
..............+.|+.+....|+....+..... ...+.|+.+.+..|.+... +. .+..+++|+.|+|++
T Consensus 143 al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D 222 (382)
T KOG1909|consen 143 ALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD 222 (382)
T ss_pred HHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc
Confidence 011111334456678999999999887665432110 1247888898888876421 11 467888999999887
Q ss_pred ccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcc--c------CCCCCCC
Q 038658 424 MSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLK--G------TFPEHLP 495 (831)
Q Consensus 424 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~------~~p~~l~ 495 (831)
+..-.. +....+ ..+..+|+|++|.+++|. ++ | .+-...|
T Consensus 223 Ntft~e-gs~~La------------------------------kaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p 270 (382)
T KOG1909|consen 223 NTFTLE-GSVALA------------------------------KALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAP 270 (382)
T ss_pred chhhhH-HHHHHH------------------------------HHhcccchheeecccccc-cccccHHHHHHHHhccCC
Confidence 532111 111111 003356677777777773 22 1 1223567
Q ss_pred cccEEEEccccCcc-------ccCCCCCccceEEEcCCCC
Q 038658 496 ALEMLVIGGCEELL-------VSITSLPALSKLEIGGCKK 528 (831)
Q Consensus 496 ~L~~L~l~~~~~l~-------~~~~~l~~L~~L~l~~~~~ 528 (831)
+|+.|.+.+|.... ..+...|.|+.|++++|..
T Consensus 271 ~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 271 SLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 78888877776322 2344578889999998874
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.97 E-value=2.1e-06 Score=92.67 Aligned_cols=102 Identities=26% Similarity=0.382 Sum_probs=77.9
Q ss_pred ccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccc
Q 038658 186 PKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLH 265 (831)
Q Consensus 186 ~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~ 265 (831)
..+..++.|..|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++++|. +..+ .++..+++|+
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDI-SGLESLKSLK 165 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhc-cCCccchhhh
Confidence 335578889999999999988865578899999999999999888 467778889999999875 4444 3466788999
Q ss_pred ccccCCCCCcccccCC-CCCccccccc
Q 038658 266 HLNNSNTDSLEEMPLG-IGKLTCLQTL 291 (831)
Q Consensus 266 ~L~l~~~~~~~~~p~~-~~~L~~L~~L 291 (831)
.+++++|. +..+... ...+.+++.+
T Consensus 166 ~l~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 166 LLDLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred cccCCcch-hhhhhhhhhhhccchHHH
Confidence 99999987 4444432 4566666665
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=1.9e-06 Score=93.07 Aligned_cols=98 Identities=27% Similarity=0.426 Sum_probs=78.1
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
.+..++.+.++.|.+.++-..++.+++|.+|++.+|.|..+...+..+++|++|++++|. ++.+ .++..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKL-EGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccc-cchhhccchhhhee
Confidence 455667777888888886566889999999999999999997668999999999999975 5555 34788888999999
Q ss_pred CCCCCcccccCCCCCccccccc
Q 038658 270 SNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 270 ~~~~~~~~~p~~~~~L~~L~~L 291 (831)
++|. +..+. ++..+++|+.+
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLL 167 (414)
T ss_pred ccCc-chhcc-CCccchhhhcc
Confidence 9998 55443 45556666666
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.82 E-value=3.5e-06 Score=70.55 Aligned_cols=94 Identities=23% Similarity=0.244 Sum_probs=75.5
Q ss_pred ccccCCcceEEEEeCCCCccccCccc-cCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccc
Q 038658 186 PKLFKLQRLRVFSLCGYWISELPDSI-GDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKL 264 (831)
Q Consensus 186 ~~~~~l~~L~~L~L~~~~i~~lp~~~-~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L 264 (831)
..+.....|...+|++|.+..+|..| .+.+....|++++|.|.++|.++..++.|+.|+++.|. +...|+.|..|.+|
T Consensus 47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKL 125 (177)
T ss_pred HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhH
Confidence 33446677888899999999888887 45568889999999999999889999999999999875 66678888888899
Q ss_pred cccccCCCCCcccccCC
Q 038658 265 HHLNNSNTDSLEEMPLG 281 (831)
Q Consensus 265 ~~L~l~~~~~~~~~p~~ 281 (831)
-.|+..+|. ...+|.+
T Consensus 126 ~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 126 DMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHhcCCCCc-cccCcHH
Confidence 889888887 5556644
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.55 E-value=5.5e-06 Score=69.45 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=81.5
Q ss_pred cceEEEEeCCCCccccCcc---ccCCCCCceeecCCCCCCccchhh-hccCCccEEeecCcCccccccccccCccccccc
Q 038658 192 QRLRVFSLCGYWISELPDS---IGDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL 267 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp~~---~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 267 (831)
+.+..+||+.|.+..+++. +....+|...+|++|.+..+|+.+ .+.+-+++|++++|. +..+|..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence 3466788999987766544 467788999999999999999887 455689999999965 88999999999999999
Q ss_pred ccCCCCCcccccCCCCCccccccc
Q 038658 268 NNSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 268 ~l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
+++.|. +...|.-+..|.+|-.|
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHh
Confidence 999998 66778777777777776
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=4.3e-06 Score=89.25 Aligned_cols=93 Identities=27% Similarity=0.305 Sum_probs=68.0
Q ss_pred cccccCCcceEEEEeCCCCccccC------c-----------------------ccc---CCCCCceeecCCCCCCccch
Q 038658 185 LPKLFKLQRLRVFSLCGYWISELP------D-----------------------SIG---DLRYLRYLNLSGTQIRTLPE 232 (831)
Q Consensus 185 ~~~~~~l~~L~~L~L~~~~i~~lp------~-----------------------~~~---~l~~Lr~L~L~~~~i~~lp~ 232 (831)
|-.++.++.||+|.|.++.+...- . .|+ ....|.+-+.++|.+..+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 667788999999999988764311 0 011 01236677778888888888
Q ss_pred hhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccC
Q 038658 233 SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPL 280 (831)
Q Consensus 233 ~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~ 280 (831)
++.-++.|+.|||++|.. ... +.+..+++|++||+++|. +..+|.
T Consensus 182 SLqll~ale~LnLshNk~-~~v-~~Lr~l~~LkhLDlsyN~-L~~vp~ 226 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKF-TKV-DNLRRLPKLKHLDLSYNC-LRHVPQ 226 (1096)
T ss_pred HHHHHHHhhhhccchhhh-hhh-HHHHhcccccccccccch-hccccc
Confidence 888899999999999763 333 368889999999999998 666663
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.28 E-value=2.3e-05 Score=87.60 Aligned_cols=237 Identities=20% Similarity=0.299 Sum_probs=128.2
Q ss_pred CCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecC-CCcccchhhhhhhHhhhhcccCCccEEEeccCCCCccc
Q 038658 562 RLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWC-PTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKL 640 (831)
Q Consensus 562 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c-~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l 640 (831)
..+.|+.+.+.+|..+...+ ........+.|++|++++| ......+..... +.....+|+.|+++.|...+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLL----LLSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred hCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhh----hhhhcCCcCccchhhhhccCch
Confidence 36888888888887766521 1234467788888888873 333222211111 1222257888888888743322
Q ss_pred -cccc-CCCCCCCeEEEecCCCCccccCC---CCCCCccEEEEecCCCCcccc-cccccCCCCCcCeEEEccCC---Ccc
Q 038658 641 -PQSL-LSLSSLREIEIYNCSSFVSFPEV---ALPSKVRSISIHRCDALKSLP-EAWMCDANLSLEILTISRCH---SLT 711 (831)
Q Consensus 641 -~~~l-~~l~~L~~L~L~~~~~l~~l~~~---~~~~~L~~L~l~~c~~l~~l~-~~~~~~~l~~L~~L~l~~c~---~l~ 711 (831)
-..+ ..+++|+.|.+.+|..+++-.-. ..+++|++|++++|..++.-. ... ...+++|+.|.+..+. .++
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~ 338 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSLT 338 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccHH
Confidence 1112 23778888888888654332111 116778888888888764421 111 1226666665544443 344
Q ss_pred eeccCC---CC-CCCceEEEecCCCCCccccccCccCCcccccCccccc-eEEEecCCCc-ccccchhhhhhhhhcccc-
Q 038658 712 YIAEVQ---LP-PSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLE-HLHIESCPSL-TCIFSKNELLATLESLEV- 784 (831)
Q Consensus 712 ~l~~~~---~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~-~L~i~~c~~l-~~i~~~~~~~~~l~~l~~- 784 (831)
.....+ .. ..+..+.+.+|++++.+.....- ... .. .+.+.+|+.+ .. + ..
T Consensus 339 ~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-------~~~--~~~~~~l~gc~~l~~~-l------------~~~ 396 (482)
T KOG1947|consen 339 DLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-------ISD--LGLELSLRGCPNLTES-L------------ELR 396 (482)
T ss_pred HHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-------ccC--cchHHHhcCCcccchH-H------------HHH
Confidence 332221 11 15666666667666655211100 011 22 4566667666 22 1 11
Q ss_pred CCCCCCcCeeEEccCCchhhh-hhcCCC-CCCCceEEecCCCCCC
Q 038658 785 GNLPPSLKSLEVLSCSKLESI-AERLDN-NTSLETITIISCKNLK 827 (831)
Q Consensus 785 ~~l~~~L~~L~l~~~~~l~~l-~~~~~~-l~~L~~L~i~~C~~l~ 827 (831)
......++.|++..|...+.- -..... +..++.+++.+|+.+.
T Consensus 397 ~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 397 LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred hccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 111133889999998877543 111111 7788888888888765
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.26 E-value=0.00017 Score=81.36 Aligned_cols=110 Identities=20% Similarity=0.219 Sum_probs=77.0
Q ss_pred ccCCcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCcc--chhhh
Q 038658 159 YNIQHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTL--PESVN 235 (831)
Q Consensus 159 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l--p~~i~ 235 (831)
.-+|.||+|.+.+... ...+ ...++ ++++|+.||++++.++.+ .++++|++|++|.+++-.+..- -..+.
T Consensus 145 ~~LPsL~sL~i~~~~~-----~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQF-----DNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred hhCcccceEEecCcee-----cchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 4578888887765332 1111 23344 888999999999998888 7788999999999988777643 25778
Q ss_pred ccCCccEEeecCcCcccc--cc----ccccCcccccccccCCCCCc
Q 038658 236 KLYNLHTLSLEGCRGLRK--LC----AGMGNLIKLHHLNNSNTDSL 275 (831)
Q Consensus 236 ~L~~L~~L~l~~~~~~~~--lp----~~i~~L~~L~~L~l~~~~~~ 275 (831)
+|++|++||+|....... +. +.-..|++||.||.+++...
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 899999999987432221 11 11235889999999887633
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.16 E-value=0.00026 Score=79.90 Aligned_cols=137 Identities=23% Similarity=0.254 Sum_probs=67.8
Q ss_pred CCCCceeecCCCCCC--ccchhh-hccCCccEEeecCcCcc-ccccccccCcccccccccCCCCCcccccCCCCCccccc
Q 038658 214 LRYLRYLNLSGTQIR--TLPESV-NKLYNLHTLSLEGCRGL-RKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQ 289 (831)
Q Consensus 214 l~~Lr~L~L~~~~i~--~lp~~i-~~L~~L~~L~l~~~~~~-~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~ 289 (831)
-.+|++||++|...- .=|..+ ..|+.|+.|.+++-... ...-.-..++++|+.||+++++ ++.+ .++++|++||
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence 355666666664321 113333 34567777777652111 1112224566777777777776 4444 5677777777
Q ss_pred cccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCcc
Q 038658 290 TLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLE 369 (831)
Q Consensus 290 ~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 369 (831)
+|........+...+ ..+..+++|+.||++........ .......+.-..+++|+
T Consensus 199 ~L~mrnLe~e~~~~l--------------------~~LF~L~~L~vLDIS~~~~~~~~-----~ii~qYlec~~~LpeLr 253 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDL--------------------IDLFNLKKLRVLDISRDKNNDDT-----KIIEQYLECGMVLPELR 253 (699)
T ss_pred HHhccCCCCCchhhH--------------------HHHhcccCCCeeeccccccccch-----HHHHHHHHhcccCcccc
Confidence 773222211111111 12334456777777655443321 12222334444456666
Q ss_pred EEEEeeec
Q 038658 370 QFFISGYG 377 (831)
Q Consensus 370 ~L~l~~~~ 377 (831)
.|+.+++.
T Consensus 254 fLDcSgTd 261 (699)
T KOG3665|consen 254 FLDCSGTD 261 (699)
T ss_pred EEecCCcc
Confidence 66666544
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.15 E-value=4.5e-05 Score=71.85 Aligned_cols=197 Identities=23% Similarity=0.243 Sum_probs=110.3
Q ss_pred ccCCcceEEEEeCCCCcc-----ccCccccCCCCCceeecCCCCCC----ccc-------hhhhccCCccEEeecCcCcc
Q 038658 188 LFKLQRLRVFSLCGYWIS-----ELPDSIGDLRYLRYLNLSGTQIR----TLP-------ESVNKLYNLHTLSLEGCRGL 251 (831)
Q Consensus 188 ~~~l~~L~~L~L~~~~i~-----~lp~~~~~l~~Lr~L~L~~~~i~----~lp-------~~i~~L~~L~~L~l~~~~~~ 251 (831)
+..+..+..++||+|.|. .+-..|.+-.+|++.+++.-... ++| +.+-++++|+..+|+.|-.-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 335777888999999876 24455667788999888864211 333 34567899999999988654
Q ss_pred cccccc----ccCcccccccccCCCCCcccccCC-CCCccccccccceEecCCCCCcchhhhccccccCeeeEccccccc
Q 038658 252 RKLCAG----MGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQ 326 (831)
Q Consensus 252 ~~lp~~----i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~ 326 (831)
...|.. |+.-+.|.||.+++|. ++.+..+ |++ .|++|. .. ..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigk--al~~la----------------~n--------------KK 152 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGK--ALFHLA----------------YN--------------KK 152 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHH--HHHHHH----------------HH--------------hh
Confidence 444443 5677889999998887 5543322 321 222220 00 11
Q ss_pred ccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCC----CccCCCCCCCceeEEEEecCC
Q 038658 327 LDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKF----PIWLGDSSFSNLVTLKFEDCG 402 (831)
Q Consensus 327 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----p~~~~~~~~~~L~~L~l~~~~ 402 (831)
....+.|++.....|....++. ......+..+.+|+.+.+..|.+..- -...+...+.+|+.|++.+|.
T Consensus 153 aa~kp~Le~vicgrNRlengs~-------~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 153 AADKPKLEVVICGRNRLENGSK-------ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred hccCCCceEEEeccchhccCcH-------HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 2233455555554444433211 01112344456677777766654311 001111125677777777776
Q ss_pred CCCCCC-----CCCCCCCcceEEeccc
Q 038658 403 MCTTLP-----SVGQLPSLKHLAVRRM 424 (831)
Q Consensus 403 ~~~~~~-----~l~~l~~L~~L~L~~~ 424 (831)
++..-. .+...+.|+.|.+.+|
T Consensus 226 ft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 226 FTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred hhhhhHHHHHHHhcccchhhhccccch
Confidence 653211 3445566777777666
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0001 Score=70.53 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=18.8
Q ss_pred CCCCCceeecCCCCCC---ccchhhhccCCccEEeecCc
Q 038658 213 DLRYLRYLNLSGTQIR---TLPESVNKLYNLHTLSLEGC 248 (831)
Q Consensus 213 ~l~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~l~~~ 248 (831)
..++++.|||.+|.|. ++-..+.+|+.|++|+++.|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N 107 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN 107 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC
Confidence 3455556666666554 22223345555566665554
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.00042 Score=66.46 Aligned_cols=84 Identities=25% Similarity=0.308 Sum_probs=59.0
Q ss_pred CCcceEEEEeCCCCccc---cCccccCCCCCceeecCCCCCCccchhh-hccCCccEEeecCcCcc-ccccccccCcccc
Q 038658 190 KLQRLRVFSLCGYWISE---LPDSIGDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGL-RKLCAGMGNLIKL 264 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~---lp~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~-~~lp~~i~~L~~L 264 (831)
.++.++.+||.+|.|+. +-.-+.+|++|++|+|+.|.+...-.+. ..+.+|++|-|.+...- ...-..+..++++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 67788999999998764 3333478999999999999766332333 46788999999874311 2233446677888
Q ss_pred cccccCCCC
Q 038658 265 HHLNNSNTD 273 (831)
Q Consensus 265 ~~L~l~~~~ 273 (831)
+.|+++.|+
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 888888774
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.99 E-value=9.4e-05 Score=79.42 Aligned_cols=80 Identities=28% Similarity=0.306 Sum_probs=54.3
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCcccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLN 268 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 268 (831)
-++.|+.|+|++|+++..- .+..+.+|+.|||++|.+..+|. +...++ |+.|.+++|. ++.+ .+|.+|++|+.||
T Consensus 185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhh-hhHHhhhhhhccc
Confidence 4566777778877777663 56777778888888877777764 223333 7777777754 4444 4577777777787
Q ss_pred cCCCC
Q 038658 269 NSNTD 273 (831)
Q Consensus 269 l~~~~ 273 (831)
+++|-
T Consensus 261 lsyNl 265 (1096)
T KOG1859|consen 261 LSYNL 265 (1096)
T ss_pred hhHhh
Confidence 77775
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.84 E-value=8.3e-05 Score=83.19 Aligned_cols=215 Identities=24% Similarity=0.370 Sum_probs=131.4
Q ss_pred cccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccC-CCCcccc----cccCCCCCCCeEEEecCCCCc
Q 038658 588 LQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDC-KGLVKLP----QSLLSLSSLREIEIYNCSSFV 662 (831)
Q Consensus 588 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~l~----~~l~~l~~L~~L~L~~~~~l~ 662 (831)
....+.|+.+.+.+|..+.... ...+......|+.|++++| ......+ .....+++|+.|+++.|..++
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDS------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred HhhCchhhHhhhcccccCChhh------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 3458999999999998877533 1112233357999999983 3333222 234457899999999997655
Q ss_pred cccCCC---CCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCccee--cc-CCCCCCCceEEEecC---CCC
Q 038658 663 SFPEVA---LPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYI--AE-VQLPPSLKNVVIRNC---DNV 733 (831)
Q Consensus 663 ~l~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l--~~-~~~~~~L~~L~l~~c---~~l 733 (831)
+..-.. .+++|++|.+.+|..+++..-......+++|++|++++|..++.- .. ...+++|+.|.+..+ ..+
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l 337 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSL 337 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccH
Confidence 432111 278999999999987665443333345889999999999887431 11 122455555554444 345
Q ss_pred CccccccCccCCccccc-CccccceEEEecCCCcccccchhhhhhhhhccccCCCCCCcC-eeEEccCCch-hhhhhcCC
Q 038658 734 RTLTVEEGIQSSSSRRY-TSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLK-SLEVLSCSKL-ESIAERLD 810 (831)
Q Consensus 734 ~~l~~~~~~~~~~~~~l-~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~~l~~~L~-~L~l~~~~~l-~~l~~~~~ 810 (831)
+.+........ . -. +..+.+.+|++++. +. +.. .+ . .... .+.+.+|+.+ ..+.....
T Consensus 338 ~~~~l~~~~~~-----~~d~--~~~~~~~~~~~l~~-~~-------l~~--~~-~-~~~~~~~~l~gc~~l~~~l~~~~~ 398 (482)
T KOG1947|consen 338 TDLSLSGLLTL-----TSDD--LAELILRSCPKLTD-LS-------LSY--CG-I-SDLGLELSLRGCPNLTESLELRLC 398 (482)
T ss_pred HHHHHHHhhcc-----Cchh--HhHHHHhcCCCcch-hh-------hhh--hh-c-cCcchHHHhcCCcccchHHHHHhc
Confidence 54421111110 1 13 77788888888877 31 000 01 1 2222 6788899988 55544445
Q ss_pred CCCCCceEEecCCCCCC
Q 038658 811 NNTSLETITIISCKNLK 827 (831)
Q Consensus 811 ~l~~L~~L~i~~C~~l~ 827 (831)
....++.|++..|..++
T Consensus 399 ~~~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 399 RSDSLRVLNLSDCRLVT 415 (482)
T ss_pred cCCccceEecccCcccc
Confidence 55569999999998664
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.84 E-value=0.0012 Score=59.99 Aligned_cols=98 Identities=23% Similarity=0.236 Sum_probs=64.8
Q ss_pred cceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhh-hccCCccEEeecCcCcccccc--ccccCcccccccc
Q 038658 192 QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESV-NKLYNLHTLSLEGCRGLRKLC--AGMGNLIKLHHLN 268 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~ 268 (831)
.....+||++|.+..++ .|..+..|.+|.|.+|+|+.+-+.+ ..+++|.+|.+.+|+ +..+- ..+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 35567788888877663 4667788888888888888775555 445668888888765 43332 2256777888888
Q ss_pred cCCCCCcccccC----CCCCcccccccc
Q 038658 269 NSNTDSLEEMPL----GIGKLTCLQTLC 292 (831)
Q Consensus 269 l~~~~~~~~~p~----~~~~L~~L~~L~ 292 (831)
+-+|. ...-+. -+.++++|++|+
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEee
Confidence 87776 332221 256677777773
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.58 E-value=0.00082 Score=37.60 Aligned_cols=19 Identities=42% Similarity=0.882 Sum_probs=9.2
Q ss_pred CceeecCCCCCCccchhhh
Q 038658 217 LRYLNLSGTQIRTLPESVN 235 (831)
Q Consensus 217 Lr~L~L~~~~i~~lp~~i~ 235 (831)
||+||+++|+++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4455555555444444443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.0017 Score=61.70 Aligned_cols=105 Identities=23% Similarity=0.258 Sum_probs=57.9
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCC--CCC-ccchhhhccCCccEEeecCcCccccc--cccccCcccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGT--QIR-TLPESVNKLYNLHTLSLEGCRGLRKL--CAGMGNLIKL 264 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~l~~~~~~~~l--p~~i~~L~~L 264 (831)
.+..|+.|++.+..++++ ..+..|++|++|.++.| ++. .++....++++|++|++++|. ++.+ -..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcch
Confidence 444555555555555544 34556677777777777 443 454444555777777777764 2221 0124556666
Q ss_pred cccccCCCCCccccc----CCCCCccccccccceEec
Q 038658 265 HHLNNSNTDSLEEMP----LGIGKLTCLQTLCNFVVG 297 (831)
Q Consensus 265 ~~L~l~~~~~~~~~p----~~~~~L~~L~~L~~~~~~ 297 (831)
..|++..|.... +- ..+.-+++|..|+.+.+.
T Consensus 119 ~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 677777665322 21 114456666666555443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00022 Score=67.66 Aligned_cols=58 Identities=33% Similarity=0.320 Sum_probs=32.0
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccc--hhhhccCCccEEeecCc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP--ESVNKLYNLHTLSLEGC 248 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~ 248 (831)
+|+.|+||.|+-|.|+++ ..+..+++|+.|.|+.|.|..+- ..+.+|++|++|.|..|
T Consensus 39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 566666666666666655 33555666666666666655442 23344455555554444
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.12 E-value=0.0058 Score=55.65 Aligned_cols=87 Identities=23% Similarity=0.202 Sum_probs=65.6
Q ss_pred cccccCCcceEEEEeCCCCccccCccc-cCCCCCceeecCCCCCCccc--hhhhccCCccEEeecCcCcccccc----cc
Q 038658 185 LPKLFKLQRLRVFSLCGYWISELPDSI-GDLRYLRYLNLSGTQIRTLP--ESVNKLYNLHTLSLEGCRGLRKLC----AG 257 (831)
Q Consensus 185 ~~~~~~l~~L~~L~L~~~~i~~lp~~~-~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~lp----~~ 257 (831)
...+..++.|.+|.|.+|+|+.+-..+ ..+++|..|.|.+|+|.++- ..+..++.|++|.+-+|... .-+ -.
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~yv 135 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLYV 135 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh-cccCceeEE
Confidence 344558889999999999999885555 45677999999999888663 35677889999999887532 221 23
Q ss_pred ccCcccccccccCCC
Q 038658 258 MGNLIKLHHLNNSNT 272 (831)
Q Consensus 258 i~~L~~L~~L~l~~~ 272 (831)
+.++++|+.||..+-
T Consensus 136 l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKV 150 (233)
T ss_pred EEecCcceEeehhhh
Confidence 778999999998764
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.00052 Score=65.20 Aligned_cols=105 Identities=21% Similarity=0.229 Sum_probs=80.8
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCcccccc--ccccCccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLC--AGMGNLIKLHHL 267 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L 267 (831)
.+.+.+.|++.+|.+..+ .-..+|+.|++|.||-|.|+++ ..+..+++|+.|+|+.|. +..+- .-+.+|++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 355677888999998877 2346899999999999999998 568899999999999875 44443 236789999999
Q ss_pred ccCCCCCcccccCC-----CCCccccccccceEec
Q 038658 268 NNSNTDSLEEMPLG-----IGKLTCLQTLCNFVVG 297 (831)
Q Consensus 268 ~l~~~~~~~~~p~~-----~~~L~~L~~L~~~~~~ 297 (831)
.|..|.-.+.-+.. +.-|++|+.|++..+.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence 99988655544433 5668888888765554
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.89 E-value=0.0042 Score=34.71 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=18.7
Q ss_pred ceEEEEeCCCCccccCccccCC
Q 038658 193 RLRVFSLCGYWISELPDSIGDL 214 (831)
Q Consensus 193 ~L~~L~L~~~~i~~lp~~~~~l 214 (831)
+|++||+++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887654
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.12 E-value=0.012 Score=30.33 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=6.0
Q ss_pred CCceeecCCCCCCccc
Q 038658 216 YLRYLNLSGTQIRTLP 231 (831)
Q Consensus 216 ~Lr~L~L~~~~i~~lp 231 (831)
+||+|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555544443
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.88 E-value=0.0014 Score=60.67 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=73.4
Q ss_pred cccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccc
Q 038658 187 KLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHH 266 (831)
Q Consensus 187 ~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 266 (831)
++..++..++||++.|++..+-..|+.++.|..||++.|.|..+|..++.+..++.+++..|. ....|.+++.++++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcch
Confidence 344677889999999998888778888899999999999999999999999999999888754 7778888999999999
Q ss_pred cccCCCC
Q 038658 267 LNNSNTD 273 (831)
Q Consensus 267 L~l~~~~ 273 (831)
++..++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 9888876
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.61 E-value=0.0085 Score=57.14 Aligned_cols=61 Identities=25% Similarity=0.195 Sum_probs=44.5
Q ss_pred cCCCCCceeecCCCCCCccchhhhccCCccEEeecCc--CccccccccccCcccccccccCCCC
Q 038658 212 GDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGC--RGLRKLCAGMGNLIKLHHLNNSNTD 273 (831)
Q Consensus 212 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~--~~~~~lp~~i~~L~~L~~L~l~~~~ 273 (831)
-.+..|..|++.+..++++ ..+-.|++|+.|+++.| .....++.-..++++|++|++++|+
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 3456666677776666544 34457889999999998 4444555555677999999999998
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.38 E-value=0.11 Score=45.52 Aligned_cols=78 Identities=10% Similarity=0.298 Sum_probs=35.6
Q ss_pred CCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccc-cccCcccccc
Q 038658 190 KLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHH 266 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~ 266 (831)
++.+|+.+.+.. .+..+ ..+|..+.+|+.+.+.++ +..++. .+.++.+|+.+.+.. ....++. .+..+++|+.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccc
Confidence 555666666653 34455 344566666666666654 555543 455565666666654 2333332 3455666666
Q ss_pred cccCC
Q 038658 267 LNNSN 271 (831)
Q Consensus 267 L~l~~ 271 (831)
+++..
T Consensus 86 i~~~~ 90 (129)
T PF13306_consen 86 IDIPS 90 (129)
T ss_dssp EEETT
T ss_pred cccCc
Confidence 66644
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.32 E-value=0.012 Score=56.09 Aligned_cols=175 Identities=17% Similarity=0.136 Sum_probs=103.6
Q ss_pred ccccCCCCCceeecCCCCCC-----ccchhhhccCCccEEeecCcC---ccccccc-------cccCcccccccccCCCC
Q 038658 209 DSIGDLRYLRYLNLSGTQIR-----TLPESVNKLYNLHTLSLEGCR---GLRKLCA-------GMGNLIKLHHLNNSNTD 273 (831)
Q Consensus 209 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~---~~~~lp~-------~i~~L~~L~~L~l~~~~ 273 (831)
+.+..+..+..++||+|.|. .+-..|.+-.+|++.+++.-. ....+|+ .+-++++|+..+++.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34455788999999999886 244556777889998887521 1112333 35577889999999887
Q ss_pred CcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhh--
Q 038658 274 SLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLRE-- 351 (831)
Q Consensus 274 ~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-- 351 (831)
+-...|..++. .++....|.+|.+++|+.......+.
T Consensus 104 fg~~~~e~L~d-----------------------------------------~is~~t~l~HL~l~NnGlGp~aG~rigk 142 (388)
T COG5238 104 FGSEFPEELGD-----------------------------------------LISSSTDLVHLKLNNNGLGPIAGGRIGK 142 (388)
T ss_pred cCcccchHHHH-----------------------------------------HHhcCCCceeEEeecCCCCccchhHHHH
Confidence 55555543211 12333456666665554322110000
Q ss_pred hhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCC---CCCCceeEEEEecCCCCCC-CC-----CCCCCCCcceEEec
Q 038658 352 AETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGD---SSFSNLVTLKFEDCGMCTT-LP-----SVGQLPSLKHLAVR 422 (831)
Q Consensus 352 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~---~~~~~L~~L~l~~~~~~~~-~~-----~l~~l~~L~~L~L~ 422 (831)
..............+.|+......|+....|..... .+-.+|+.+.+..|.+... +. .+..+.+|+.|+|+
T Consensus 143 al~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlq 222 (388)
T COG5238 143 ALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQ 222 (388)
T ss_pred HHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecc
Confidence 001112223345568899999998887776643221 1125788888888876422 11 34567788888887
Q ss_pred cc
Q 038658 423 RM 424 (831)
Q Consensus 423 ~~ 424 (831)
++
T Consensus 223 DN 224 (388)
T COG5238 223 DN 224 (388)
T ss_pred cc
Confidence 64
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.93 E-value=0.037 Score=28.53 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=8.4
Q ss_pred CCCceEEecCCCCCCCCC
Q 038658 813 TSLETITIISCKNLKNLP 830 (831)
Q Consensus 813 ~~L~~L~i~~C~~l~~lp 830 (831)
++|+.|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 456666666666 66665
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.0066 Score=55.35 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=44.0
Q ss_pred ccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC---CCCCCCceEEEecCCCCCccccccCccCCcccc
Q 038658 673 VRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV---QLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRR 749 (831)
Q Consensus 673 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 749 (831)
++.++.+++.....-.+.+.. +++++.|.+.+|..+.+-.-. +..++|+.|+|++|+++++-. -..+..
T Consensus 103 IeaVDAsds~I~~eGle~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~----- 174 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRD--LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLK----- 174 (221)
T ss_pred EEEEecCCchHHHHHHHHHhc--cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHH-----
Confidence 344444444333322333333 666666677666655432111 345677777777777777553 222333
Q ss_pred cCccccceEEEecCCCcc
Q 038658 750 YTSSLLEHLHIESCPSLT 767 (831)
Q Consensus 750 l~~~~L~~L~i~~c~~l~ 767 (831)
+++ |+.|.+.+-+.+.
T Consensus 175 lkn--Lr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 175 LKN--LRRLHLYDLPYVA 190 (221)
T ss_pred hhh--hHHHHhcCchhhh
Confidence 444 6666666654443
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=0.017 Score=52.79 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=18.9
Q ss_pred CCcCeeEEccCCchhhh-hhcCCCCCCCceEEecCCCCC
Q 038658 789 PSLKSLEVLSCSKLESI-AERLDNNTSLETITIISCKNL 826 (831)
Q Consensus 789 ~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~i~~C~~l 826 (831)
++|+.|+|++|+.+++- -.++..+++|+.|.+.+-|.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 55555555555555443 333444555555555554443
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.38 E-value=0.49 Score=41.36 Aligned_cols=9 Identities=33% Similarity=0.383 Sum_probs=2.9
Q ss_pred CCCCCeEEE
Q 038658 647 LSSLREIEI 655 (831)
Q Consensus 647 l~~L~~L~L 655 (831)
+++|+.+.+
T Consensus 57 ~~~l~~i~~ 65 (129)
T PF13306_consen 57 CKSLESITF 65 (129)
T ss_dssp -TT-EEEEE
T ss_pred ccccccccc
Confidence 333444444
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.07 E-value=0.13 Score=30.14 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=14.4
Q ss_pred CCCCceeecCCCCCCccchhh
Q 038658 214 LRYLRYLNLSGTQIRTLPESV 234 (831)
Q Consensus 214 l~~Lr~L~L~~~~i~~lp~~i 234 (831)
+++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456777777777777776543
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.07 E-value=0.13 Score=30.14 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=14.4
Q ss_pred CCCCceeecCCCCCCccchhh
Q 038658 214 LRYLRYLNLSGTQIRTLPESV 234 (831)
Q Consensus 214 l~~Lr~L~L~~~~i~~lp~~i 234 (831)
+++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 456777777777777776543
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.50 E-value=0.011 Score=54.95 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=74.7
Q ss_pred ccccC-ccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCC
Q 038658 204 ISELP-DSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGI 282 (831)
Q Consensus 204 i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~ 282 (831)
++.+| ..+.....-++||++.|++..+-..++.++.|..||++.| .+..+|.+++.+..++++++..|+ ....|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 33454 4567788899999999998888888999999999999985 488899999999999999999887 88899999
Q ss_pred CCccccccc
Q 038658 283 GKLTCLQTL 291 (831)
Q Consensus 283 ~~L~~L~~L 291 (831)
++++.++.+
T Consensus 108 ~k~~~~k~~ 116 (326)
T KOG0473|consen 108 KKEPHPKKN 116 (326)
T ss_pred cccCCcchh
Confidence 999998887
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.89 E-value=0.5 Score=27.58 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=12.8
Q ss_pred CCCCceEEecCCCCCC
Q 038658 812 NTSLETITIISCKNLK 827 (831)
Q Consensus 812 l~~L~~L~i~~C~~l~ 827 (831)
+++|++|++++|++++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 5788888888888775
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.79 E-value=0.54 Score=27.42 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=17.7
Q ss_pred CcceEEEEeCCCCccccCccc
Q 038658 191 LQRLRVFSLCGYWISELPDSI 211 (831)
Q Consensus 191 l~~L~~L~L~~~~i~~lp~~~ 211 (831)
+++|++|+|++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467999999999999997653
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.79 E-value=0.54 Score=27.42 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=17.7
Q ss_pred CcceEEEEeCCCCccccCccc
Q 038658 191 LQRLRVFSLCGYWISELPDSI 211 (831)
Q Consensus 191 l~~L~~L~L~~~~i~~lp~~~ 211 (831)
+++|++|+|++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467999999999999997653
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.80 E-value=1.1 Score=25.93 Aligned_cols=18 Identities=44% Similarity=0.665 Sum_probs=13.1
Q ss_pred CCCceeecCCCCCCccch
Q 038658 215 RYLRYLNLSGTQIRTLPE 232 (831)
Q Consensus 215 ~~Lr~L~L~~~~i~~lp~ 232 (831)
.+|++|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777777777777775
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.60 E-value=2 Score=25.05 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=9.6
Q ss_pred CCCceeecCCCCCCcc
Q 038658 215 RYLRYLNLSGTQIRTL 230 (831)
Q Consensus 215 ~~Lr~L~L~~~~i~~l 230 (831)
++|++|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666543
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.57 E-value=1.5 Score=24.94 Aligned_cols=12 Identities=50% Similarity=0.587 Sum_probs=4.3
Q ss_pred CCceeecCCCCC
Q 038658 216 YLRYLNLSGTQI 227 (831)
Q Consensus 216 ~Lr~L~L~~~~i 227 (831)
+|++|+|++|.|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444443
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=59.47 E-value=7.3 Score=23.18 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=9.1
Q ss_pred CCCceeecCCCCCC
Q 038658 215 RYLRYLNLSGTQIR 228 (831)
Q Consensus 215 ~~Lr~L~L~~~~i~ 228 (831)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777664
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.42 E-value=16 Score=39.52 Aligned_cols=79 Identities=11% Similarity=0.052 Sum_probs=41.9
Q ss_pred CccEEEeccCCCC--cccccccCCCCCCCeEEEecCCC-CccccCCCC--CCCccEEEEecCCCCcccccc-----cccC
Q 038658 625 RLEYLLLNDCKGL--VKLPQSLLSLSSLREIEIYNCSS-FVSFPEVAL--PSKVRSISIHRCDALKSLPEA-----WMCD 694 (831)
Q Consensus 625 ~L~~L~l~~~~~~--~~l~~~l~~l~~L~~L~L~~~~~-l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~~-----~~~~ 694 (831)
.+..+.+++|+.. ..+...-...++|+.|+|++|.. +.+-++... ...|++|.+.||+..+..... ....
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~ 298 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIRE 298 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHHH
Confidence 5777778877642 22222333467888888888721 111111111 456777777777765554321 0112
Q ss_pred CCCCcCeEE
Q 038658 695 ANLSLEILT 703 (831)
Q Consensus 695 ~l~~L~~L~ 703 (831)
.+|+|..||
T Consensus 299 ~FPKL~~LD 307 (585)
T KOG3763|consen 299 LFPKLLRLD 307 (585)
T ss_pred hcchheeec
Confidence 366666665
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=28.49 E-value=1e+02 Score=20.68 Aligned_cols=13 Identities=38% Similarity=0.480 Sum_probs=6.5
Q ss_pred CCCCCCCceEEEe
Q 038658 716 VQLPPSLKNVVIR 728 (831)
Q Consensus 716 ~~~~~~L~~L~l~ 728 (831)
+.+|++|++|.+.
T Consensus 30 ~~lP~sl~~L~fg 42 (44)
T PF05725_consen 30 GSLPNSLKSLSFG 42 (44)
T ss_pred CccCCCceEEEee
Confidence 3445555555543
No 91
>PF13730 HTH_36: Helix-turn-helix domain
Probab=27.96 E-value=1.5e+02 Score=20.76 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=31.9
Q ss_pred cCChhhhhHhhhhCCCCCCC--cc-CHHHHHHHHHHcCCcCCCCCCCchHHHHHHHHHHHHhcccc
Q 038658 30 YLSAPLKQCFAYCSLFPKDY--EF-EEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFF 92 (831)
Q Consensus 30 ~L~~~~k~cfl~~~~fp~~~--~i-~~~~Li~~wi~~G~i~~~~~~~~~~~~~~~~~~~Lv~~~ll 92 (831)
+|++..|..+++++-|..+. .+ +.+++... . | .+ +....+++++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~-~--g--------~s-~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKD-L--G--------VS-RRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHH-H--C--------cC-HHHHHHHHHHHHHCcCC
Confidence 57777788888777665322 22 34444443 1 1 11 45678899999999875
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.40 E-value=41 Score=36.67 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=7.5
Q ss_pred CCCCCcEEEEccCC
Q 038658 562 RLPKLEELEISNIK 575 (831)
Q Consensus 562 ~l~~L~~L~l~~~~ 575 (831)
.+|.+..+.++++.
T Consensus 216 n~p~i~sl~lsnNr 229 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR 229 (585)
T ss_pred CCcceeeeecccch
Confidence 45555555555544
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=21.27 E-value=2e+02 Score=35.05 Aligned_cols=81 Identities=15% Similarity=0.269 Sum_probs=55.6
Q ss_pred CchHHHHh-ccccCChhhhhHhhhhCCCCCCCccCHHHHHHHHHHcCCcCCCCCCCchHHHHHHHHHHHHhccccee-ec
Q 038658 19 DIIPALRV-SYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQ-SS 96 (831)
Q Consensus 19 ~i~~~L~l-SY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~wi~~G~i~~~~~~~~~~~~~~~~~~~Lv~~~ll~~-~~ 96 (831)
.+...+.- -|+.||.+.+..++..|+++ .+. .++... +.+. +.+...+++|.+++++.. .+
T Consensus 250 ~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~-~~l~~~-----l~~~--------~~~~~~L~~l~~~~l~~~~~~ 312 (903)
T PRK04841 250 HLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMN-DALIVR-----VTGE--------ENGQMRLEELERQGLFIQRMD 312 (903)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCC-HHHHHH-----HcCC--------CcHHHHHHHHHHCCCeeEeec
Confidence 35555433 38899999999999999987 333 233331 1111 125678999999999764 34
Q ss_pred CCcccEeecHHHHHHHHHHh
Q 038658 97 NNKSLFVMHDLINDLAHWAA 116 (831)
Q Consensus 97 ~~~~~~~mHdlv~d~a~~i~ 116 (831)
+....|+.|++++++...-.
T Consensus 313 ~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 313 DSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCCCEEehhHHHHHHHHHHH
Confidence 34457889999999998654
No 94
>PF14162 YozD: YozD-like protein
Probab=20.34 E-value=1.6e+02 Score=20.31 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=19.8
Q ss_pred HHcCCcCCCCCCCchHHHHHHHHHHHHhccccee
Q 038658 61 SAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQ 94 (831)
Q Consensus 61 i~~G~i~~~~~~~~~~~~~~~~~~~Lv~~~ll~~ 94 (831)
+.-||++.. ...++.|..-|+-|+++|++..
T Consensus 22 ~kRGyvP~e---~El~eiADItFeYll~K~iIdE 52 (57)
T PF14162_consen 22 VKRGYVPTE---EELEEIADITFEYLLEKCIIDE 52 (57)
T ss_pred HHccCCCcH---HHHHHHHHHHHHHHHHHHhhhh
Confidence 334777543 4566677777777777777654
Done!