Query 038658
Match_columns 831
No_of_seqs 607 out of 4121
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 23:17:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.8E-43 9.5E-48 411.9 27.2 562 184-831 69-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 9.4E-41 3.2E-45 390.5 28.8 558 192-830 50-697 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.3E-37 1.5E-41 357.1 36.1 517 190-803 71-623 (680)
4 3t6q_A CD180 antigen; protein- 100.0 8.8E-37 3E-41 349.6 29.7 107 183-291 26-134 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 3E-35 1E-39 341.6 40.5 532 183-825 18-621 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-35 5.5E-40 339.2 30.6 204 183-422 25-237 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-35 8.8E-40 337.5 30.0 482 187-765 51-557 (606)
8 3t6q_A CD180 antigen; protein- 100.0 7.1E-35 2.4E-39 333.8 31.4 480 162-766 33-560 (606)
9 2z81_A CD282 antigen, TOLL-lik 100.0 4.2E-34 1.4E-38 323.4 28.1 208 183-424 19-233 (549)
10 3j0a_A TOLL-like receptor 5; m 100.0 2E-32 6.7E-37 323.6 38.4 497 190-801 22-559 (844)
11 4eco_A Uncharacterized protein 100.0 1.9E-33 6.4E-38 320.8 22.2 431 162-731 81-598 (636)
12 2z81_A CD282 antigen, TOLL-lik 100.0 5.5E-33 1.9E-37 314.2 25.3 461 162-708 26-508 (549)
13 3j0a_A TOLL-like receptor 5; m 100.0 3.6E-32 1.2E-36 321.4 32.6 494 135-708 22-558 (844)
14 4ecn_A Leucine-rich repeat pro 100.0 2E-32 6.8E-37 316.3 25.4 371 225-731 435-838 (876)
15 2z63_A TOLL-like receptor 4, v 100.0 2.5E-31 8.5E-36 302.4 28.0 478 136-731 27-529 (570)
16 2z63_A TOLL-like receptor 4, v 100.0 2.3E-31 7.9E-36 302.7 27.3 482 183-766 21-531 (570)
17 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-30 8.7E-35 290.0 30.8 423 192-729 21-477 (520)
18 4ecn_A Leucine-rich repeat pro 100.0 3.4E-31 1.2E-35 306.0 23.9 355 207-687 440-843 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 4.3E-31 1.5E-35 296.2 23.2 449 140-709 3-480 (520)
20 4eco_A Uncharacterized protein 100.0 5.8E-31 2E-35 300.3 20.6 107 184-291 198-335 (636)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.8E-29 1.3E-33 282.6 28.4 411 192-714 52-489 (562)
22 4g8a_A TOLL-like receptor 4; l 100.0 6.2E-29 2.1E-33 287.0 23.5 482 193-764 53-578 (635)
23 1jl5_A Outer protein YOPM; leu 100.0 2.2E-28 7.4E-33 266.2 21.8 266 190-527 9-288 (454)
24 4g8a_A TOLL-like receptor 4; l 100.0 8.5E-28 2.9E-32 277.5 27.9 493 163-731 53-578 (635)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.4E-28 3.2E-32 271.2 26.4 450 140-684 34-510 (562)
26 1jl5_A Outer protein YOPM; leu 100.0 1.8E-27 6.3E-32 258.8 26.2 430 208-809 5-436 (454)
27 3v47_A TOLL-like receptor 5B a 99.9 8.1E-27 2.8E-31 257.0 19.3 100 192-291 30-134 (455)
28 1o6v_A Internalin A; bacterial 99.9 1.1E-25 3.7E-30 247.8 26.9 95 191-291 45-139 (466)
29 3v47_A TOLL-like receptor 5B a 99.9 1.1E-26 3.8E-31 255.8 18.8 94 195-291 13-108 (455)
30 3bz5_A Internalin-J, INLJ; leu 99.9 3E-26 1E-30 249.5 21.2 358 185-715 35-392 (457)
31 1o6v_A Internalin A; bacterial 99.9 4.8E-25 1.6E-29 242.6 24.4 118 160-291 44-161 (466)
32 3bz5_A Internalin-J, INLJ; leu 99.9 4.7E-25 1.6E-29 240.1 19.3 226 157-452 37-262 (457)
33 4fmz_A Internalin; leucine ric 99.9 1.1E-23 3.8E-28 222.7 22.3 80 190-273 42-121 (347)
34 3o6n_A APL1; leucine-rich repe 99.9 1.7E-23 5.9E-28 224.8 23.0 90 190-280 43-134 (390)
35 2id5_A Lingo-1, leucine rich r 99.9 2E-23 6.7E-28 231.1 22.7 105 184-291 26-133 (477)
36 3o6n_A APL1; leucine-rich repe 99.9 1.9E-23 6.6E-28 224.5 19.3 302 160-528 43-351 (390)
37 4fmz_A Internalin; leucine ric 99.9 1.6E-22 5.4E-27 213.8 22.5 123 156-291 38-160 (347)
38 2id5_A Lingo-1, leucine rich r 99.9 1.3E-22 4.4E-27 224.5 21.6 224 162-425 32-259 (477)
39 3oja_B Anopheles plasmodium-re 99.9 6.9E-23 2.3E-27 232.4 18.9 302 160-528 49-357 (597)
40 3oja_B Anopheles plasmodium-re 99.9 7.9E-22 2.7E-26 223.7 24.0 89 190-279 49-139 (597)
41 4fcg_A Uncharacterized protein 99.9 5.8E-22 2E-26 206.3 16.5 216 190-492 79-295 (328)
42 1xku_A Decorin; proteoglycan, 99.9 4.6E-21 1.6E-25 200.7 20.7 282 193-527 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 2.9E-21 9.9E-26 202.3 18.7 281 193-527 34-331 (332)
44 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-21 4.1E-26 202.7 11.1 149 137-291 50-202 (313)
45 4fcg_A Uncharacterized protein 99.8 5.7E-21 1.9E-25 198.8 14.0 206 161-433 80-296 (328)
46 1ogq_A PGIP-2, polygalacturona 99.8 2E-21 6.8E-26 201.1 9.3 223 162-425 50-279 (313)
47 3ogk_B Coronatine-insensitive 99.8 7.7E-23 2.6E-27 233.4 -1.9 112 588-706 432-547 (592)
48 3ogk_B Coronatine-insensitive 99.8 4.1E-22 1.4E-26 227.5 1.1 61 213-273 110-175 (592)
49 2ft3_A Biglycan; proteoglycan, 99.8 1.3E-19 4.3E-24 189.8 17.5 196 188-424 74-274 (332)
50 2z80_A TOLL-like receptor 2, v 99.8 9E-20 3.1E-24 192.8 15.5 87 190-279 29-116 (353)
51 1xku_A Decorin; proteoglycan, 99.8 2.3E-19 8E-24 187.7 17.9 96 193-291 53-150 (330)
52 3g06_A SSPH2 (leucine-rich rep 99.8 1.6E-18 5.4E-23 194.0 24.5 78 192-279 40-117 (622)
53 2z80_A TOLL-like receptor 2, v 99.8 3.9E-19 1.3E-23 187.9 11.4 187 183-405 45-236 (353)
54 2p1m_B Transport inhibitor res 99.8 3.7E-21 1.3E-25 219.6 -5.1 84 190-273 64-167 (594)
55 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-17 8.9E-22 184.2 25.7 85 183-280 54-138 (622)
56 2z66_A Variable lymphocyte rec 99.8 1.5E-18 5.2E-23 179.5 14.4 180 183-424 21-209 (306)
57 1z7x_W Ribonuclease inhibitor; 99.8 1.3E-21 4.5E-26 215.7 -9.6 94 563-659 312-409 (461)
58 3zyi_A Leucine-rich repeat-con 99.8 3.6E-18 1.2E-22 186.9 15.1 98 192-291 75-176 (452)
59 3zyj_A Leucine-rich repeat-con 99.8 1.5E-17 5.1E-22 181.3 19.7 225 183-506 57-290 (440)
60 3zyi_A Leucine-rich repeat-con 99.8 1.2E-17 4.2E-22 182.6 18.5 240 193-506 55-301 (452)
61 3zyj_A Leucine-rich repeat-con 99.8 5.3E-18 1.8E-22 184.9 15.4 124 162-291 64-190 (440)
62 2z66_A Variable lymphocyte rec 99.8 2.8E-18 9.7E-23 177.4 12.5 222 162-425 28-259 (306)
63 1ozn_A Reticulon 4 receptor; N 99.7 6.8E-18 2.3E-22 172.5 12.7 200 192-425 32-236 (285)
64 1z7x_W Ribonuclease inhibitor; 99.7 2E-21 7E-26 214.2 -14.7 149 137-291 3-175 (461)
65 3o53_A Protein LRIM1, AGAP0063 99.7 3E-19 1E-23 185.3 2.2 248 190-492 32-281 (317)
66 1wwl_A Monocyte differentiatio 99.7 4.7E-18 1.6E-22 175.8 9.1 200 190-425 93-307 (312)
67 1ozn_A Reticulon 4 receptor; N 99.7 5.3E-17 1.8E-21 165.9 15.8 194 195-424 14-211 (285)
68 2p1m_B Transport inhibitor res 99.7 5.8E-19 2E-23 201.4 0.1 160 363-527 63-246 (594)
69 3o53_A Protein LRIM1, AGAP0063 99.7 2.7E-18 9.4E-23 178.0 4.7 247 159-460 31-278 (317)
70 2z62_A TOLL-like receptor 4, v 99.7 4.1E-17 1.4E-21 165.8 12.6 203 192-425 28-235 (276)
71 1p9a_G Platelet glycoprotein I 99.7 1.8E-16 6.1E-21 161.5 16.0 174 192-425 31-206 (290)
72 2o6q_A Variable lymphocyte rec 99.7 3.8E-16 1.3E-20 157.8 16.5 175 192-425 37-216 (270)
73 1p9a_G Platelet glycoprotein I 99.7 2.3E-16 8E-21 160.6 14.1 197 138-404 11-208 (290)
74 1wwl_A Monocyte differentiatio 99.7 3.2E-18 1.1E-22 177.1 -0.3 81 190-273 41-132 (312)
75 1h6u_A Internalin H; cell adhe 99.7 2.4E-16 8.2E-21 162.3 12.9 190 190-425 39-228 (308)
76 3rfs_A Internalin B, repeat mo 99.7 3.4E-16 1.1E-20 158.3 13.7 175 190-424 39-215 (272)
77 2xwt_C Thyrotropin receptor; s 99.7 4.5E-16 1.5E-20 154.2 14.2 95 193-289 32-130 (239)
78 3oja_A Leucine-rich immune mol 99.7 1.4E-16 4.7E-21 175.0 10.5 241 191-486 33-275 (487)
79 2z62_A TOLL-like receptor 4, v 99.6 6.8E-16 2.3E-20 156.8 13.1 94 196-291 11-105 (276)
80 3oja_A Leucine-rich immune mol 99.6 2.1E-16 7.1E-21 173.6 9.7 217 161-427 33-250 (487)
81 2o6q_A Variable lymphocyte rec 99.6 1.5E-15 5.2E-20 153.4 14.5 179 162-404 37-218 (270)
82 3rfs_A Internalin B, repeat mo 99.6 5.3E-16 1.8E-20 156.9 9.6 196 157-425 36-233 (272)
83 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.8E-19 152.3 18.8 236 476-762 12-255 (350)
84 1h6u_A Internalin H; cell adhe 99.6 2.7E-15 9.3E-20 154.4 12.3 195 158-405 37-231 (308)
85 4ay9_X Follicle-stimulating ho 99.6 1.7E-14 5.8E-19 151.7 18.5 241 369-706 12-255 (350)
86 2xwt_C Thyrotropin receptor; s 99.6 1.5E-14 5.1E-19 143.2 16.9 175 563-764 54-237 (239)
87 4glp_A Monocyte differentiatio 99.6 1.6E-15 5.4E-20 156.8 10.2 199 190-425 89-305 (310)
88 2ast_B S-phase kinase-associat 99.6 4.6E-17 1.6E-21 171.0 -4.7 205 188-454 64-282 (336)
89 3m19_A Variable lymphocyte rec 99.6 2.4E-14 8E-19 142.8 14.2 172 193-425 15-190 (251)
90 2a5y_B CED-4; apoptosis; HET: 99.5 1.4E-15 4.6E-20 169.5 0.7 100 17-121 360-473 (549)
91 3m19_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 137.6 14.1 175 215-454 14-189 (251)
92 4ezg_A Putative uncharacterize 99.5 3.1E-14 1.1E-18 136.0 8.9 100 190-291 42-141 (197)
93 4glp_A Monocyte differentiatio 99.5 2.1E-13 7.1E-18 140.8 15.6 201 472-708 90-305 (310)
94 1h6t_A Internalin B; cell adhe 99.5 5.6E-14 1.9E-18 143.1 10.8 168 190-425 44-211 (291)
95 2ca6_A RAN GTPase-activating p 99.5 1.9E-15 6.7E-20 161.6 -0.5 112 157-274 27-171 (386)
96 2ca6_A RAN GTPase-activating p 99.5 2.7E-15 9.1E-20 160.6 -1.8 92 183-274 23-134 (386)
97 3goz_A Leucine-rich repeat-con 99.4 1.2E-14 4.2E-19 153.6 1.6 96 178-273 8-120 (362)
98 1h6t_A Internalin B; cell adhe 99.4 3.8E-13 1.3E-17 136.9 12.0 121 157-291 41-161 (291)
99 3cvr_A Invasion plasmid antige 99.4 4.5E-13 1.5E-17 148.0 13.2 176 193-426 60-242 (571)
100 1m9s_A Internalin B; cell inva 99.4 1.9E-13 6.5E-18 152.9 9.8 96 190-291 41-136 (605)
101 2v9t_B SLIT homolog 2 protein 99.4 1.2E-12 4.1E-17 127.1 13.9 83 195-280 14-97 (220)
102 2o6s_A Variable lymphocyte rec 99.4 2.8E-13 9.5E-18 130.8 8.7 98 192-291 28-129 (208)
103 2ast_B S-phase kinase-associat 99.4 1.4E-14 4.9E-19 151.9 -0.5 200 162-424 70-282 (336)
104 1xeu_A Internalin C; cellular 99.4 1.3E-13 4.4E-18 138.1 6.1 59 363-425 125-183 (263)
105 3e6j_A Variable lymphocyte rec 99.4 1.8E-12 6.2E-17 126.8 13.7 76 195-273 22-99 (229)
106 3cvr_A Invasion plasmid antige 99.4 4.2E-13 1.4E-17 148.2 10.0 174 184-408 74-247 (571)
107 4ezg_A Putative uncharacterize 99.4 3.8E-13 1.3E-17 128.4 7.3 86 187-273 83-170 (197)
108 1m9s_A Internalin B; cell inva 99.4 3.2E-13 1.1E-17 151.1 7.2 189 191-425 20-208 (605)
109 2o6s_A Variable lymphocyte rec 99.4 6.6E-13 2.2E-17 128.2 8.0 121 162-291 28-153 (208)
110 2v9t_B SLIT homolog 2 protein 99.4 1.7E-12 5.7E-17 126.1 9.8 99 192-291 32-133 (220)
111 3e6j_A Variable lymphocyte rec 99.4 1.3E-12 4.3E-17 127.9 8.9 98 192-291 40-140 (229)
112 1xeu_A Internalin C; cellular 99.3 1.9E-12 6.5E-17 129.5 9.7 97 188-291 37-133 (263)
113 2v70_A SLIT-2, SLIT homolog 2 99.3 2.4E-12 8.4E-17 124.9 9.7 98 194-291 34-134 (220)
114 2xot_A Amphoterin-induced prot 99.3 1.5E-12 5.2E-17 137.2 8.7 93 196-291 22-117 (361)
115 2v70_A SLIT-2, SLIT homolog 2 99.3 5.2E-12 1.8E-16 122.6 9.5 114 178-291 42-158 (220)
116 2ell_A Acidic leucine-rich nuc 99.3 5.7E-12 2E-16 116.8 9.0 124 162-294 24-155 (168)
117 2ell_A Acidic leucine-rich nuc 99.3 1.9E-12 6.6E-17 120.0 5.4 100 190-291 22-125 (168)
118 3goz_A Leucine-rich repeat-con 99.3 1.7E-13 5.8E-18 144.8 -2.1 108 162-275 22-151 (362)
119 2je0_A Acidic leucine-rich nuc 99.3 3.4E-12 1.2E-16 115.6 6.8 122 162-292 17-146 (149)
120 2wfh_A SLIT homolog 2 protein 99.2 1.5E-11 5.2E-16 116.3 9.7 99 192-291 31-131 (193)
121 2je0_A Acidic leucine-rich nuc 99.2 2.3E-12 7.9E-17 116.7 3.7 100 190-291 15-118 (149)
122 1w8a_A SLIT protein; signaling 99.2 1.2E-11 4.2E-16 117.1 8.3 99 193-291 30-131 (192)
123 1a9n_A U2A', U2A'; complex (nu 99.2 1.4E-11 4.9E-16 115.0 7.7 127 156-293 13-147 (176)
124 2xot_A Amphoterin-induced prot 99.2 9.9E-12 3.4E-16 131.0 6.8 105 184-291 33-141 (361)
125 4b8c_D Glucose-repressible alc 99.2 3.1E-11 1.1E-15 138.7 10.9 106 185-292 217-322 (727)
126 1w8a_A SLIT protein; signaling 99.2 3.9E-11 1.3E-15 113.6 8.6 109 163-277 30-141 (192)
127 4b8c_D Glucose-repressible alc 99.2 6.7E-12 2.3E-16 144.3 2.5 122 156-285 218-339 (727)
128 1a9n_A U2A', U2A'; complex (nu 99.1 2.1E-11 7.1E-16 113.9 5.2 101 187-291 14-118 (176)
129 2wfh_A SLIT homolog 2 protein 99.1 8.1E-11 2.8E-15 111.3 9.2 105 162-274 31-138 (193)
130 1dce_A Protein (RAB geranylger 99.1 9.6E-11 3.3E-15 130.2 9.5 97 193-292 442-539 (567)
131 1dce_A Protein (RAB geranylger 99.1 8E-11 2.7E-15 130.9 7.3 138 182-344 399-546 (567)
132 1vt4_I APAF-1 related killer D 99.1 5.6E-11 1.9E-15 134.4 4.7 84 18-113 353-437 (1221)
133 1ds9_A Outer arm dynein; leuci 99.0 2E-12 6.7E-17 123.5 -7.6 101 187-291 43-145 (198)
134 2o6r_A Variable lymphocyte rec 99.0 7.8E-10 2.7E-14 103.3 9.7 98 192-291 28-129 (177)
135 2r9u_A Variable lymphocyte rec 99.0 4.1E-10 1.4E-14 104.3 6.9 94 183-280 26-122 (174)
136 3sb4_A Hypothetical leucine ri 99.0 1.8E-09 6.3E-14 112.1 11.6 95 191-291 48-153 (329)
137 2r9u_A Variable lymphocyte rec 99.0 1.1E-09 3.7E-14 101.5 8.5 94 195-292 15-111 (174)
138 2o6r_A Variable lymphocyte rec 98.9 1.8E-09 6E-14 100.8 9.2 108 161-276 27-138 (177)
139 3g39_A Variable lymphocyte rec 98.9 1.4E-09 4.9E-14 100.4 8.4 81 192-273 30-113 (170)
140 1ds9_A Outer arm dynein; leuci 98.9 1.1E-11 3.9E-16 118.2 -6.2 126 157-292 43-180 (198)
141 3sfz_A APAF-1, apoptotic pepti 98.9 6.5E-10 2.2E-14 138.4 6.8 90 18-119 362-452 (1249)
142 3g39_A Variable lymphocyte rec 98.9 2.8E-09 9.5E-14 98.4 8.2 96 194-293 11-109 (170)
143 3sb4_A Hypothetical leucine ri 98.8 6.6E-08 2.2E-12 100.3 16.3 36 494-529 100-137 (329)
144 4fs7_A Uncharacterized protein 98.7 2.2E-06 7.4E-11 91.3 24.0 64 204-270 59-125 (394)
145 1z6t_A APAF-1, apoptotic prote 98.7 1.7E-08 5.6E-13 114.3 6.7 88 18-117 362-450 (591)
146 2ifg_A High affinity nerve gro 98.7 4E-08 1.4E-12 103.0 8.9 88 184-273 24-114 (347)
147 4fdw_A Leucine rich hypothetic 98.6 3.8E-07 1.3E-11 96.5 15.2 233 193-482 136-379 (401)
148 4fdw_A Leucine rich hypothetic 98.6 1.1E-06 3.8E-11 93.0 18.2 256 191-506 112-381 (401)
149 2ifg_A High affinity nerve gro 98.5 1.1E-07 3.6E-12 99.7 8.1 94 196-292 12-109 (347)
150 4fs7_A Uncharacterized protein 98.4 1.4E-05 4.9E-10 84.9 21.7 62 184-247 62-126 (394)
151 3e4g_A ATP synthase subunit S, 98.3 3E-07 1E-11 83.0 4.5 38 697-735 61-100 (176)
152 3un9_A NLR family member X1; l 98.2 6E-08 2.1E-12 101.7 -2.5 82 192-273 72-166 (372)
153 3e4g_A ATP synthase subunit S, 98.2 7.8E-07 2.7E-11 80.3 4.4 85 625-711 62-153 (176)
154 2ra8_A Uncharacterized protein 98.0 8.1E-06 2.8E-10 84.6 8.1 88 642-731 166-263 (362)
155 3un9_A NLR family member X1; l 98.0 1.7E-06 6E-11 90.5 2.0 84 190-273 124-222 (372)
156 4gt6_A Cell surface protein; l 97.9 0.0005 1.7E-08 72.8 20.1 63 585-658 304-367 (394)
157 3rw6_A Nuclear RNA export fact 97.9 8.5E-06 2.9E-10 79.7 5.0 62 213-276 168-234 (267)
158 4gt6_A Cell surface protein; l 97.9 0.00042 1.4E-08 73.4 18.0 105 157-272 58-170 (394)
159 2ra8_A Uncharacterized protein 97.8 2E-05 6.8E-10 81.7 6.5 128 625-764 173-318 (362)
160 3rw6_A Nuclear RNA export fact 97.7 6.7E-06 2.3E-10 80.4 0.8 79 190-269 168-258 (267)
161 1io0_A Tropomodulin; LRR prote 97.5 3.8E-05 1.3E-09 71.4 3.2 84 190-273 63-162 (185)
162 1io0_A Tropomodulin; LRR prote 97.5 2.8E-05 9.6E-10 72.3 1.7 105 187-291 31-156 (185)
163 4h09_A Hypothetical leucine ri 97.2 0.064 2.2E-06 56.1 24.1 58 643-705 258-318 (379)
164 4h09_A Hypothetical leucine ri 97.2 0.022 7.5E-07 59.7 20.3 77 190-271 44-122 (379)
165 3rfe_A Platelet glycoprotein I 96.3 0.0057 2E-07 52.5 5.9 52 196-249 12-66 (130)
166 1pgv_A TMD-1, tropomodulin TMD 93.3 0.06 2.1E-06 49.4 4.1 83 190-272 39-136 (197)
167 3rfe_A Platelet glycoprotein I 93.3 0.077 2.6E-06 45.3 4.5 53 218-273 11-66 (130)
168 1pgv_A TMD-1, tropomodulin TMD 91.1 0.089 3.1E-06 48.3 2.3 88 186-273 64-168 (197)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.8e-43 Score=411.86 Aligned_cols=562 Identities=16% Similarity=0.069 Sum_probs=302.0
Q ss_pred ccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCC-ccch--hhhccCCccEEeecCcCccccccccc-c
Q 038658 184 ILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIR-TLPE--SVNKLYNLHTLSLEGCRGLRKLCAGM-G 259 (831)
Q Consensus 184 ~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~-~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~i-~ 259 (831)
+++.+..++.|++++++.+.+..+|..|+++++|++|+|++|.+. .+|. .++++++|++|++++|.....+|..+ +
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 444444555555555555555445555555555555555555554 3444 55555555555555554444444433 4
Q ss_pred CcccccccccCCCCCcccccCC---CCCccccccccceEecCCCCCcchhhhcccccc-CeeeEcccccccccCCCCcce
Q 038658 260 NLIKLHHLNNSNTDSLEEMPLG---IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLR-GTLTISKLENAQLDGKKNLKV 335 (831)
Q Consensus 260 ~L~~L~~L~l~~~~~~~~~p~~---~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~-~~l~i~~l~~~~l~~~~~L~~ 335 (831)
++++|++|++++|.+.+..|.. ++++++|++|...............+.+|+.|. ....+...... +..+++|++
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~ 227 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH 227 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCE
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCE
Confidence 5555555555555533333333 445555555421111100001111222222111 01111111112 556666666
Q ss_pred EEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCC-CCccCCCCCCCceeEEEEecCCCCCCCC-CCCC-
Q 038658 336 LMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTK-FPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQ- 412 (831)
Q Consensus 336 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~- 412 (831)
|++++|..... .+..+..+++|+.|++++|.... +|.. .+++|++|++++|.+.+.+| .+..
T Consensus 228 L~Ls~n~l~~~-----------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~ 292 (768)
T 3rgz_A 228 LDISGNKLSGD-----------FSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDFLSGA 292 (768)
T ss_dssp EECCSSCCCSC-----------HHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCCCSCTT
T ss_pred EECcCCcCCCc-----------ccHHHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccCCccCHHHHhh
Confidence 66666554322 33345566666666666665542 2322 25666666666666665555 3433
Q ss_pred CCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC
Q 038658 413 LPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE 492 (831)
Q Consensus 413 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~ 492 (831)
+++|++|++++|.....++..+. .+++|+.|++.++.-... +... .+..+++|++|++++| .+++.+|.
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~------~l~~L~~L~L~~n~l~~~-ip~~---~l~~l~~L~~L~Ls~n-~l~~~~p~ 361 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFG------SCSLLESLALSSNNFSGE-LPMD---TLLKMRGLKVLDLSFN-EFSGELPE 361 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGG------GCTTCCEEECCSSEEEEE-CCHH---HHTTCTTCCEEECCSS-EEEECCCT
T ss_pred cCcCCEEECcCCcCCCccchHHh------cCCCccEEECCCCcccCc-CCHH---HHhcCCCCCEEeCcCC-ccCccccH
Confidence 36666666666543323322222 266666666665422101 1100 0345666677777664 45445565
Q ss_pred CC---C-cccEEEEccccCc---cccCCC--CCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCC
Q 038658 493 HL---P-ALEMLVIGGCEEL---LVSITS--LPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRL 563 (831)
Q Consensus 493 ~l---~-~L~~L~l~~~~~l---~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 563 (831)
.+ + +|+.|++++|... ...+.. +++|++|++++|...... +.....+
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------------------------p~~l~~l 417 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI------------------------PPTLSNC 417 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC------------------------CGGGGGC
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc------------------------CHHHhcC
Confidence 32 2 6666666666522 222222 556666666666532211 1112345
Q ss_pred CCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccc
Q 038658 564 PKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQS 643 (831)
Q Consensus 564 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~ 643 (831)
++|+.|++++|.... .....+..+++|+.|++++|.-...++.. +.. .++|++|++++|...+.+|..
T Consensus 418 ~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~-------l~~L~~L~L~~N~l~~~~p~~ 485 (768)
T 3rgz_A 418 SELVSLHLSFNYLSG----TIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMY-------VKTLETLILDFNDLTGEIPSG 485 (768)
T ss_dssp TTCCEEECCSSEEES----CCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGG-------CTTCCEEECCSSCCCSCCCGG
T ss_pred CCCCEEECcCCcccC----cccHHHhcCCCCCEEECCCCcccCcCCHH-HcC-------CCCceEEEecCCcccCcCCHH
Confidence 667777776664221 22333466677777777665322233221 111 145777777777666666666
Q ss_pred cCCCCCCCeEEEecCCCCccccCCCC-CCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC------
Q 038658 644 LLSLSSLREIEIYNCSSFVSFPEVAL-PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV------ 716 (831)
Q Consensus 644 l~~l~~L~~L~L~~~~~l~~l~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~------ 716 (831)
+..+++|++|++++|.....+|.... +++|++|++++|...+.+|..+.. +++|+.|++++|+-...+|..
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG--CTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC--CCCCCEEECCCCccCCcCChHHhcccc
Confidence 67777777777777654445554322 667777777776665566666665 677777777666433233321
Q ss_pred -----------------------------------------------------------------CCCCCCceEEEecCC
Q 038658 717 -----------------------------------------------------------------QLPPSLKNVVIRNCD 731 (831)
Q Consensus 717 -----------------------------------------------------------------~~~~~L~~L~l~~c~ 731 (831)
...++|+.|+++++.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~ 643 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence 113567888887754
Q ss_pred CCCccccccCccCCcccccCccccceEEEecCCCcccccchhhhhhhhhccccCCCCCCcCeeEEccCCchhhhhhcCCC
Q 038658 732 NVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDN 811 (831)
Q Consensus 732 ~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~l~~l~~~~~~ 811 (831)
--..+ |..+.. ++. |+.|++++|.-...+.. ..+.+ ++|+.|++++|.....+|..+..
T Consensus 644 l~g~i--p~~l~~-----l~~--L~~L~Ls~N~l~g~ip~-----------~l~~L-~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 644 LSGYI--PKEIGS-----MPY--LFILNLGHNDISGSIPD-----------EVGDL-RGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp CBSCC--CGGGGG-----CTT--CCEEECCSSCCCSCCCG-----------GGGGC-TTCCEEECCSSCCEECCCGGGGG
T ss_pred ccccC--CHHHhc-----ccc--CCEEeCcCCccCCCCCh-----------HHhCC-CCCCEEECCCCcccCcCChHHhC
Confidence 33355 666665 777 88888888755444220 11334 78999999998877788999999
Q ss_pred CCCCceEEecCCCCCCCCCC
Q 038658 812 NTSLETITIISCKNLKNLPT 831 (831)
Q Consensus 812 l~~L~~L~i~~C~~l~~lp~ 831 (831)
+++|++|++++|+--..+|+
T Consensus 703 l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCCCSEEECCSSEEEEECCS
T ss_pred CCCCCEEECcCCcccccCCC
Confidence 99999999999976666663
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.4e-41 Score=390.49 Aligned_cols=558 Identities=19% Similarity=0.121 Sum_probs=351.0
Q ss_pred cceEEEEeCCCCccc----cCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccc--cccCccccc
Q 038658 192 QRLRVFSLCGYWISE----LPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCA--GMGNLIKLH 265 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~----lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~ 265 (831)
.+++.|+|+++.+.. +|.++.++++|++++++.+.+..+|+.++++++|++|||++|...+.+|. .++++++|+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 129 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCC
Confidence 578999999988764 78899999999999999999888889999999999999999987777888 899999999
Q ss_pred ccccCCCCCcccccCCC-CCccccccccceEecCCCCCc------chhhhcccccc-CeeeEcccccccccCCCCcceEE
Q 038658 266 HLNNSNTDSLEEMPLGI-GKLTCLQTLCNFVVGKDSGSR------LRELKLLTHLR-GTLTISKLENAQLDGKKNLKVLM 337 (831)
Q Consensus 266 ~L~l~~~~~~~~~p~~~-~~L~~L~~L~~~~~~~~~~~~------~~~l~~L~~L~-~~l~i~~l~~~~l~~~~~L~~L~ 337 (831)
+|++++|...+.+|..+ +++++|++|+...... .+.. +..+++|+.|. ....+... ..+..+++|++|+
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~l~~L~~L~ 206 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-SGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLD 206 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC-EEETHHHHHHTTCCTTCCEEECCSSEEESC--CBCTTCTTCCEEE
T ss_pred EEECcCCccCCcCCHHHhccCCCCCEEECCCCcc-CCcCChhhhhhccCCCCCEEECCCCccccc--CCcccCCcCCEEE
Confidence 99999998777777765 8899999984321111 0000 11122222111 01111111 1224455555555
Q ss_pred EEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCC-CCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCc
Q 038658 338 LRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGT-KFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSL 416 (831)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L 416 (831)
+++|..... ...+..+++|+.|++++|.+. .+|.++.. +++|+.|++++|.+.+.+|.. .+++|
T Consensus 207 Ls~n~l~~~------------~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~~~~-~l~~L 271 (768)
T 3rgz_A 207 VSSNNFSTG------------IPFLGDCSALQHLDISGNKLSGDFSRAIST--CTELKLLNISSNQFVGPIPPL-PLKSL 271 (768)
T ss_dssp CCSSCCCSC------------CCBCTTCCSCCEEECCSSCCCSCHHHHTTT--CSSCCEEECCSSCCEESCCCC-CCTTC
T ss_pred CcCCcCCCC------------CcccccCCCCCEEECcCCcCCCcccHHHhc--CCCCCEEECCCCcccCccCcc-ccCCC
Confidence 554443221 111444555555555555544 23444433 555555555555554444433 45555
Q ss_pred ceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC----
Q 038658 417 KHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE---- 492 (831)
Q Consensus 417 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---- 492 (831)
++|++++|.....++..+.+ .+++|+.|++.++.-. ...+..++.+++|++|++++| .+.+.+|.
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~-----~~~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~ 340 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSG-----ACDTLTGLDLSGNHFY-----GAVPPFFGSCSLLESLALSSN-NFSGELPMDTLL 340 (768)
T ss_dssp CEEECCSSEEEESCCCCSCT-----TCTTCSEEECCSSEEE-----ECCCGGGGGCTTCCEEECCSS-EEEEECCHHHHT
T ss_pred CEEECcCCccCCccCHHHHh-----hcCcCCEEECcCCcCC-----CccchHHhcCCCccEEECCCC-cccCcCCHHHHh
Confidence 55555554322222221111 1355555555543211 111222344555555555553 33334442
Q ss_pred CCCcccEEEEccccC---ccccCCCCC-ccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcE
Q 038658 493 HLPALEMLVIGGCEE---LLVSITSLP-ALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEE 568 (831)
Q Consensus 493 ~l~~L~~L~l~~~~~---l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 568 (831)
.+++|+.|++++|.. ++..+..++ +|+.|++++|....... .......+++|++
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~----------------------~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL----------------------PNLCQNPKNTLQE 398 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC----------------------TTTTCSTTCCCCE
T ss_pred cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC----------------------hhhhhcccCCccE
Confidence 345555555555541 222222233 55555555554211000 0001112678999
Q ss_pred EEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCC
Q 038658 569 LEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLS 648 (831)
Q Consensus 569 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~ 648 (831)
|++++|.... .....+..+++|++|++++| .+.......+.. + ++|++|++++|...+.+|..+..++
T Consensus 399 L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~------l-~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 399 LYLQNNGFTG----KIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGS------L-SKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp EECCSSEEEE----ECCGGGGGCTTCCEEECCSS-EEESCCCGGGGG------C-TTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred EECCCCcccc----ccCHHHhcCCCCCEEECcCC-cccCcccHHHhc------C-CCCCEEECCCCcccCcCCHHHcCCC
Confidence 9999987432 23445688999999999996 454332222222 2 5899999999998889999999999
Q ss_pred CCCeEEEecCCCCccccCCC-CCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC-CCCCCCceEE
Q 038658 649 SLREIEIYNCSSFVSFPEVA-LPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV-QLPPSLKNVV 726 (831)
Q Consensus 649 ~L~~L~L~~~~~l~~l~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~ 726 (831)
+|++|++++|...+.+|... .+++|++|++++|.....+|..+.. +++|++|++++|.-...+|.. ..+++|+.|+
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR--LENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG--CTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc--CCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 99999999996555666432 2899999999999887789988887 999999999998765567754 4568999999
Q ss_pred EecCCCCCccccccCccCC-------------------------------------------------------------
Q 038658 727 IRNCDNVRTLTVEEGIQSS------------------------------------------------------------- 745 (831)
Q Consensus 727 l~~c~~l~~l~~~~~~~~~------------------------------------------------------------- 745 (831)
+++|+-...+ |..+...
T Consensus 545 Ls~N~l~g~i--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 545 LNTNLFNGTI--PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp CCSSEEESBC--CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred CCCCccCCcC--ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 9987544333 2221110
Q ss_pred ----cccccCccccceEEEecCCCcccccchhhhhhhhhccccCCCCCCcCeeEEccCCchhhhhhcCCCCCCCceEEec
Q 038658 746 ----SSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLETITII 821 (831)
Q Consensus 746 ----~~~~l~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~i~ 821 (831)
....+++ |++|++++|.-.+.+.. ..+.+ ++|+.|++++|.....+|..+..+++|+.|+++
T Consensus 623 ~~~~~~~~l~~--L~~LdLs~N~l~g~ip~-----------~l~~l-~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 623 HTSPTFDNNGS--MMFLDMSYNMLSGYIPK-----------EIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp ECCCSCSSSBC--CCEEECCSSCCBSCCCG-----------GGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cCchhhhcccc--ccEEECcCCcccccCCH-----------HHhcc-ccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 0012455 88888888754444220 12334 789999999988767889999999999999999
Q ss_pred CCCCCCCCC
Q 038658 822 SCKNLKNLP 830 (831)
Q Consensus 822 ~C~~l~~lp 830 (831)
+|.--..+|
T Consensus 689 ~N~l~g~ip 697 (768)
T 3rgz_A 689 SNKLDGRIP 697 (768)
T ss_dssp SSCCEECCC
T ss_pred CCcccCcCC
Confidence 997665666
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.3e-37 Score=357.09 Aligned_cols=517 Identities=16% Similarity=0.105 Sum_probs=315.2
Q ss_pred CCcceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccCccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL 267 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 267 (831)
++++|++|+|++|.++.+|. +|+++++|++|++++|.++.+| ..++++++|++|++++|......|..++++++|++|
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 44445555555444444433 3444455555555544444443 334444555555554444333333444444455555
Q ss_pred ccCCCCCcccccCCCC--CccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCC
Q 038658 268 NNSNTDSLEEMPLGIG--KLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTD 345 (831)
Q Consensus 268 ~l~~~~~~~~~p~~~~--~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~ 345 (831)
++++|.+.+..|..++ .+++|+.|. +. ...+..+....+..+.+|+.|++..+...
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~--------------------L~-~n~l~~~~~~~~~~l~~L~~L~l~~~~l~- 208 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLE--------------------LS-SNQIKEFSPGCFHAIGRLFGLFLNNVQLG- 208 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEE--------------------CT-TCCCCCBCTTGGGGSSEECEEECTTCCCH-
T ss_pred EccCCcccccCHHHhhccccccccEEE--------------------CC-CCcccccChhhhhhhhhhhhhhccccccC-
Confidence 5544442221111111 223333331 11 22333444455666777777776544321
Q ss_pred CCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCC-CccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEecc
Q 038658 346 GSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKF-PIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRR 423 (831)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~ 423 (831)
... .......+ ..++|+.|+++++..... |.++.....++|+.|++++|.+.+..+ .++.+++|+.|++++
T Consensus 209 ----~~~--~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (680)
T 1ziw_A 209 ----PSL--TEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281 (680)
T ss_dssp ----HHH--HHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ----hhh--HHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence 000 00111111 247899999998887654 445443112459999999998877665 688899999999988
Q ss_pred ccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCC----CCCCCCCcccEEeEcCCcCcccCCCC---CCCc
Q 038658 424 MSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGST----QGVEGFPKLRELEVIGCSKLKGTFPE---HLPA 496 (831)
Q Consensus 424 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~ 496 (831)
+......+..+ ..+++|+.|++.+......+.....+ ..+..+++|++|++++| .+++..|. .+++
T Consensus 282 n~l~~~~~~~~------~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 354 (680)
T 1ziw_A 282 NNIQHLFSHSL------HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLIN 354 (680)
T ss_dssp CCBSEECTTTT------TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTT
T ss_pred CccCccChhhh------cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccC
Confidence 75333322222 23888999988753211110000111 12567899999999994 66644443 5788
Q ss_pred ccEEEEccccCcccc-----CC--CCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEE
Q 038658 497 LEMLVIGGCEELLVS-----IT--SLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEEL 569 (831)
Q Consensus 497 L~~L~l~~~~~l~~~-----~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 569 (831)
|+.|++++|..-... +. ..++|+.|++++|..... .+..+..+++|+.|
T Consensus 355 L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~------------------------~~~~~~~l~~L~~L 410 (680)
T 1ziw_A 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI------------------------ESDAFSWLGHLEVL 410 (680)
T ss_dssp CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE------------------------CTTTTTTCTTCCEE
T ss_pred CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE------------------------ChhhhhCCCCCCEE
Confidence 999999988621111 11 136899999999874432 12234568899999
Q ss_pred EEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCC--cccccccCCC
Q 038658 570 EISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGL--VKLPQSLLSL 647 (831)
Q Consensus 570 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~l~~~l~~l 647 (831)
+++++..... .+...+..+++|++|++++| .+..+....+... ++|+.|++++|... +.+|..+..+
T Consensus 411 ~L~~N~l~~~---~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~-------~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 411 DLGLNEIGQE---LTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALV-------PSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp ECCSSCCEEE---CCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTC-------TTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred eCCCCcCccc---cCcccccCcccccEEecCCC-CcceeChhhhhcC-------cccccchhccccccccccCCcccccC
Confidence 9999874332 44456788999999999996 5665554433322 57999999998754 5678889999
Q ss_pred CCCCeEEEecCCCCccccCCCC--CCCccEEEEecCCCCccccc---------ccccCCCCCcCeEEEccCCCcceeccC
Q 038658 648 SSLREIEIYNCSSFVSFPEVAL--PSKVRSISIHRCDALKSLPE---------AWMCDANLSLEILTISRCHSLTYIAEV 716 (831)
Q Consensus 648 ~~L~~L~L~~~~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~---------~~~~~~l~~L~~L~l~~c~~l~~l~~~ 716 (831)
++|+.|++++| .++.++...+ +++|++|++++|. ++.++. .+.. +++|++|++++| .++.+|..
T Consensus 480 ~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~--l~~L~~L~L~~N-~l~~i~~~ 554 (680)
T 1ziw_A 480 RNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKG--LSHLHILNLESN-GFDEIPVE 554 (680)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTT--CTTCCEEECCSS-CCCCCCTT
T ss_pred CCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcC--CCCCCEEECCCC-CCCCCCHH
Confidence 99999999998 6777776544 8999999999975 444321 1334 899999999997 67788764
Q ss_pred --CCCCCCceEEEecCCCCCccccccCc-cCCcccccCccccceEEEecCCCcccccchhhhhhhhhccccCCCCCCcCe
Q 038658 717 --QLPPSLKNVVIRNCDNVRTLTVEEGI-QSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLPPSLKS 793 (831)
Q Consensus 717 --~~~~~L~~L~l~~c~~l~~l~~~~~~-~~~~~~~l~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~~l~~~L~~ 793 (831)
...++|++|++++ ++++.+ +.+. .. +++ |++|++++| .+..+. .. ... ..+ ++|+.
T Consensus 555 ~~~~l~~L~~L~Ls~-N~l~~l--~~~~~~~-----l~~--L~~L~L~~N-~l~~~~-~~-~~~-------~~~-~~L~~ 613 (680)
T 1ziw_A 555 VFKDLFELKIIDLGL-NNLNTL--PASVFNN-----QVS--LKSLNLQKN-LITSVE-KK-VFG-------PAF-RNLTE 613 (680)
T ss_dssp TTTTCTTCCEEECCS-SCCCCC--CTTTTTT-----CTT--CCEEECTTS-CCCBCC-HH-HHH-------HHH-TTCSE
T ss_pred HcccccCcceeECCC-CCCCcC--CHhHhCC-----CCC--CCEEECCCC-cCCccC-hh-Hhc-------ccc-cccCE
Confidence 3457999999976 578877 5443 34 777 999999997 455422 00 000 012 78999
Q ss_pred eEEccCCchh
Q 038658 794 LEVLSCSKLE 803 (831)
Q Consensus 794 L~l~~~~~l~ 803 (831)
|+++++|-..
T Consensus 614 l~l~~N~~~c 623 (680)
T 1ziw_A 614 LDMRFNPFDC 623 (680)
T ss_dssp EECTTCCCCB
T ss_pred EEccCCCccc
Confidence 9999988543
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.8e-37 Score=349.63 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=85.9
Q ss_pred cccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccC
Q 038658 183 SILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGN 260 (831)
Q Consensus 183 ~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~ 260 (831)
.+|..+. +.+++|++++|.++.+ |.+|+++++||+|+|++|.+..+ |.+++++++|++|++++|......|..+++
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 4455444 3689999999999887 67889999999999999998866 678899999999999998766666888999
Q ss_pred cccccccccCCCCCcccccCCCCCccccccc
Q 038658 261 LIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 261 L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
+++|++|++++|.+....|..++++++|++|
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred cccccEeeccccCcccCCcchhccCCcccEE
Confidence 9999999999998443335667777777777
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3e-35 Score=341.56 Aligned_cols=532 Identities=17% Similarity=0.149 Sum_probs=342.9
Q ss_pred cccccccCCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccc-ccc
Q 038658 183 SILPKLFKLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCA-GMG 259 (831)
Q Consensus 183 ~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~-~i~ 259 (831)
.+|..+. +++++|+|++|.++.+| ..|+++++|++|++++|.++.+ |..++++++|++|++++|. +..+|. .|+
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~ 94 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFA 94 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhc
Confidence 4555543 68999999999999885 4689999999999999999976 6788999999999999986 556766 599
Q ss_pred CcccccccccCCCCCccccc-CCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEE
Q 038658 260 NLIKLHHLNNSNTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLML 338 (831)
Q Consensus 260 ~L~~L~~L~l~~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l 338 (831)
++++|++|++++|.+ ..+| ..++++++|++|+. . ...+.......+..+++|++|++
T Consensus 95 ~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L--------------------s-~n~l~~~~~~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 95 FCTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDL--------------------S-HNGLSSTKLGTQVQLENLQELLL 152 (680)
T ss_dssp TCTTCSEEECCSSCC-CCCCSCTTTTCTTCCEEEC--------------------C-SSCCSCCCCCSSSCCTTCCEEEC
T ss_pred cCCCCCEEECCCCcc-CccChhHccccCCCCEEEC--------------------C-CCcccccCchhhcccccCCEEEc
Confidence 999999999999984 4555 66999999999932 1 22233334455778899999999
Q ss_pred EeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCc-cCCCCCC---------------------------
Q 038658 339 RWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPI-WLGDSSF--------------------------- 390 (831)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~--------------------------- 390 (831)
++|...... .. .. .....++|+.|++++|....++. ++.. +
T Consensus 153 ~~n~l~~~~--~~------~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~l~~~~l~~~~~~~~~~~l~~ 221 (680)
T 1ziw_A 153 SNNKIQALK--SE------EL-DIFANSSLKKLELSSNQIKEFSPGCFHA--IGRLFGLFLNNVQLGPSLTEKLCLELAN 221 (680)
T ss_dssp CSSCCCCBC--HH------HH-GGGTTCEESEEECTTCCCCCBCTTGGGG--SSEECEEECTTCCCHHHHHHHHHHHHTT
T ss_pred cCCcccccC--HH------Hh-hccccccccEEECCCCcccccChhhhhh--hhhhhhhhccccccChhhHHHHHHHhhh
Confidence 887654320 00 00 11234789999999998776543 3322 3
Q ss_pred CceeEEEEecCCCCCCCC-CCCCCCC--cceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCC
Q 038658 391 SNLVTLKFEDCGMCTTLP-SVGQLPS--LKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQ 467 (831)
Q Consensus 391 ~~L~~L~l~~~~~~~~~~-~l~~l~~--L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 467 (831)
++|+.|++++|.+.+..| .+..++. |+.|+++++. +..++...+ ..+++|+.|++.+.. +... .+.
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~L~~n~-l~~~----~~~ 290 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSF-----AWLPQLEYFFLEYNN-IQHL----FSH 290 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTT-----TTCTTCCEEECCSCC-BSEE----CTT
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcccc-----cCcccccEeeCCCCc-cCcc----Chh
Confidence 445666666666555444 4555443 7777777654 333322222 226677777776632 1111 122
Q ss_pred CCCCCCcccEEeEcCCcCccc-----CCC-------CCCCcccEEEEccccCc---cccCCCCCccceEEEcCCCCcccc
Q 038658 468 GVEGFPKLRELEVIGCSKLKG-----TFP-------EHLPALEMLVIGGCEEL---LVSITSLPALSKLEIGGCKKVVWR 532 (831)
Q Consensus 468 ~~~~~~~L~~L~l~~c~~l~~-----~~p-------~~l~~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~ 532 (831)
.+..+++|+.|++++|. ..+ .+| ..+++|+.|++++|... ...+..+++|++|++++|......
T Consensus 291 ~~~~l~~L~~L~L~~~~-~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 369 (680)
T 1ziw_A 291 SLHGLFNVRYLNLKRSF-TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369 (680)
T ss_dssp TTTTCTTCCEEECTTCB-CCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCE
T ss_pred hhcCCCCccEEeccchh-hhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhh
Confidence 25567777777776632 111 122 24567777777776522 233556777777777766521100
Q ss_pred ccccccCCCCceeeccccchhhccCCCCC--CCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchh
Q 038658 533 SETDHLGSQNSVVCRDTLNQVLLAGPLKP--RLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVA 610 (831)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 610 (831)
+....+. ..++|+.|+++++.... .....+..+++|+.|+++++.--..++.
T Consensus 370 ----------------------l~~~~f~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 370 ----------------------LTNETFVSLAHSPLHILNLTKNKISK----IESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp ----------------------ECTTTTGGGTTSCCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred ----------------------cchhhhcccccCcCceEECCCCCCCe----EChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 0000011 12578888888876322 3445567888888888888533233443
Q ss_pred hhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCC--CccccCCC-CCCCccEEEEecCCCCccc
Q 038658 611 EEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSS--FVSFPEVA-LPSKVRSISIHRCDALKSL 687 (831)
Q Consensus 611 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~--l~~l~~~~-~~~~L~~L~l~~c~~l~~l 687 (831)
..+... ++|++|++++|......+..+..+++|++|++++|.. +..+|... .+++|+.|++++|. ++.+
T Consensus 424 ~~~~~l-------~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i 495 (680)
T 1ziw_A 424 QEWRGL-------ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANI 495 (680)
T ss_dssp GGGTTC-------TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCC
T ss_pred ccccCc-------ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcC
Confidence 333222 5788888888886666667788888888888888742 12334322 27888999998865 4455
Q ss_pred cc-ccccCCCCCcCeEEEccCCCcceeccC----------CCCCCCceEEEecCCCCCccccccC-ccCCcccccCcccc
Q 038658 688 PE-AWMCDANLSLEILTISRCHSLTYIAEV----------QLPPSLKNVVIRNCDNVRTLTVEEG-IQSSSSRRYTSSLL 755 (831)
Q Consensus 688 ~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~----------~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~~~~~l~~~~L 755 (831)
+. .+.. +++|++|++++| .++.++.. ..+++|++|+++++ +++.+ +.+ +.. +++ |
T Consensus 496 ~~~~~~~--l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i--~~~~~~~-----l~~--L 562 (680)
T 1ziw_A 496 NDDMLEG--LEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEI--PVEVFKD-----LFE--L 562 (680)
T ss_dssp CTTTTTT--CTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCC--CTTTTTT-----CTT--C
T ss_pred Chhhhcc--ccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCC--CHHHccc-----ccC--c
Confidence 43 4554 888999999886 45554321 23468889998874 67666 443 444 677 9
Q ss_pred ceEEEecCCCcccccchhhhhhhhhccccC---CCCCCcCeeEEccCCchhhh-hhcCC-CCCCCceEEecCCCC
Q 038658 756 EHLHIESCPSLTCIFSKNELLATLESLEVG---NLPPSLKSLEVLSCSKLESI-AERLD-NNTSLETITIISCKN 825 (831)
Q Consensus 756 ~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~---~l~~~L~~L~l~~~~~l~~l-~~~~~-~l~~L~~L~i~~C~~ 825 (831)
++|+++++ .++. + +.. .+ ++|+.|++++|. ++.+ +..+. .+++|+.|+++++|-
T Consensus 563 ~~L~Ls~N-~l~~-l------------~~~~~~~l-~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 563 KIIDLGLN-NLNT-L------------PASVFNNQ-VSLKSLNLQKNL-ITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp CEEECCSS-CCCC-C------------CTTTTTTC-TTCCEEECTTSC-CCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred ceeECCCC-CCCc-C------------CHhHhCCC-CCCCEEECCCCc-CCccChhHhcccccccCEEEccCCCc
Confidence 99999875 4444 2 222 23 789999999875 6665 44454 678999999988763
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-35 Score=339.15 Aligned_cols=204 Identities=17% Similarity=0.069 Sum_probs=151.4
Q ss_pred cccccccCCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccC
Q 038658 183 SILPKLFKLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGN 260 (831)
Q Consensus 183 ~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~ 260 (831)
.+|..+. +++++|++++|.++.++ ..|.++++||+|++++|.++.+ |.+++++++|++|++++|......|..|++
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 4555544 68999999999999885 5899999999999999999987 568899999999999998755556888999
Q ss_pred cccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccc-cccccCCCCcceEEEE
Q 038658 261 LIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLE-NAQLDGKKNLKVLMLR 339 (831)
Q Consensus 261 L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~-~~~l~~~~~L~~L~l~ 339 (831)
+++|++|++++|...+..|..++++++|++|.. . ...+..+. ...+.++++|++|+++
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--------------------~-~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNV--------------------A-HNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC--------------------C-SSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeC--------------------C-CCcccceechHhHhhcCCCCEEEcc
Confidence 999999999999844444467999999999832 1 12222222 3567888999999998
Q ss_pred eecCCCCCChhhhhhHHhhhcCCCCCCC----ccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCC-CCC-CCCCC
Q 038658 340 WTNSTDGSSLREAETQKGVLDMLKPHKN----LEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCT-TLP-SVGQL 413 (831)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~----L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~-~~~-~l~~l 413 (831)
+|..... ....+..+.+ +..|++++|.+..+|..... ..+|+.|++++|...+ ..| .++.+
T Consensus 162 ~n~l~~~-----------~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l 228 (606)
T 3vq2_A 162 YNYIQTI-----------TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNL 228 (606)
T ss_dssp SSCCCEE-----------CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTT
T ss_pred CCcceec-----------ChhhhhhhhccccccceeeccCCCcceeCccccc--CceeeeeeccCCccchhHHHHHhccc
Confidence 8765432 1122222233 45789999888887776654 3489999999987653 223 56677
Q ss_pred CCcceEEec
Q 038658 414 PSLKHLAVR 422 (831)
Q Consensus 414 ~~L~~L~L~ 422 (831)
+.|+.+.+.
T Consensus 229 ~~L~~l~l~ 237 (606)
T 3vq2_A 229 AGLHVHRLI 237 (606)
T ss_dssp TTCEEEEEE
T ss_pred ccccccccc
Confidence 788877765
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-35 Score=337.45 Aligned_cols=482 Identities=18% Similarity=0.161 Sum_probs=222.5
Q ss_pred cccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccCcccc
Q 038658 187 KLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKL 264 (831)
Q Consensus 187 ~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L 264 (831)
.+.++++|++|++++|.++.+ |.+|+++++||+|+|++|.++.+ |.+++++++|++|++++|......|..++++++|
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 333555555555555555544 34455555555555555555544 4455555555555555544322222445555555
Q ss_pred cccccCCCCCcc-cccCCCCCccccccccceEec--CCCCCcchhhhcccc----cc-CeeeEcccccccccCCCCcceE
Q 038658 265 HHLNNSNTDSLE-EMPLGIGKLTCLQTLCNFVVG--KDSGSRLRELKLLTH----LR-GTLTISKLENAQLDGKKNLKVL 336 (831)
Q Consensus 265 ~~L~l~~~~~~~-~~p~~~~~L~~L~~L~~~~~~--~~~~~~~~~l~~L~~----L~-~~l~i~~l~~~~l~~~~~L~~L 336 (831)
++|++++|...+ .+|..++++++|++|...... ......+..+.+++. +. ....+..+....+... +|+.|
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L 209 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHEL 209 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeee
Confidence 555555555322 345555555555555221111 111122222322221 10 0222333333444444 78889
Q ss_pred EEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCC------Cc-cCCCCCCCceeEEEE-ecCCCCCCCC
Q 038658 337 MLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKF------PI-WLGDSSFSNLVTLKF-EDCGMCTTLP 408 (831)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------p~-~~~~~~~~~L~~L~l-~~~~~~~~~~ 408 (831)
++++|.... ......+..++.++.+.+........ +. ++....--+++.+++ ..+.+.+..|
T Consensus 210 ~L~~n~~~~----------~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~ 279 (606)
T 3vq2_A 210 TLRGNFNSS----------NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279 (606)
T ss_dssp EEESCCSCH----------HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG
T ss_pred eccCCccch----------hHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc
Confidence 888775421 11233455667777777765543321 11 111101125667777 4555566666
Q ss_pred CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCccc
Q 038658 409 SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKG 488 (831)
Q Consensus 409 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 488 (831)
.+..+++|+.|++.++.. ..++ . +..+++|++|++++| .+.
T Consensus 280 ~~~~l~~L~~L~l~~~~~-~~l~-~-----------------------------------l~~~~~L~~L~l~~n-~l~- 320 (606)
T 3vq2_A 280 KFHCLANVSAMSLAGVSI-KYLE-D-----------------------------------VPKHFKWQSLSIIRC-QLK- 320 (606)
T ss_dssp SCGGGTTCSEEEEESCCC-CCCC-C-----------------------------------CCTTCCCSEEEEESC-CCS-
T ss_pred ccccCCCCCEEEecCccc-hhhh-h-----------------------------------ccccccCCEEEcccc-cCc-
Confidence 788888999998887542 2222 0 223344444444443 222
Q ss_pred CCCC-CCCcccEEEEccccCc-cccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCC
Q 038658 489 TFPE-HLPALEMLVIGGCEEL-LVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKL 566 (831)
Q Consensus 489 ~~p~-~l~~L~~L~l~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 566 (831)
.+|. .+++|+.|++++|... ...+..+++|+.|++++|........ ......+++|
T Consensus 321 ~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~----------------------~~~~~~~~~L 378 (606)
T 3vq2_A 321 QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCC----------------------SYSDLGTNSL 378 (606)
T ss_dssp SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEEC----------------------CHHHHCCSCC
T ss_pred ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcch----------------------hhhhccCCcc
Confidence 3332 3344444444444211 12233445555555555442211000 0001134455
Q ss_pred cEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchh-hhhhhHhhhhcccCCccEEEeccCCCCcccccccC
Q 038658 567 EELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVA-EEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLL 645 (831)
Q Consensus 567 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~ 645 (831)
+.|+++++.. +. .+ ..+..+++|++|+++++ .+...+. ..+.. + ++|++|++++|...+..|..+.
T Consensus 379 ~~L~L~~n~l-~~---~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~------l-~~L~~L~l~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 379 RHLDLSFNGA-II---MS-ANFMGLEELQHLDFQHS-TLKRVTEFSAFLS------L-EKLLYLDISYTNTKIDFDGIFL 445 (606)
T ss_dssp CEEECCSCSE-EE---EC-CCCTTCTTCCEEECTTS-EEESTTTTTTTTT------C-TTCCEEECTTSCCEECCTTTTT
T ss_pred cEeECCCCcc-cc---ch-hhccCCCCCCeeECCCC-ccCCccChhhhhc------c-ccCCEEECcCCCCCccchhhhc
Confidence 5555555441 11 22 22345555555555553 2222211 11111 1 3556666666555555555555
Q ss_pred CCCCCCeEEEecCCCCcc-ccCC-CCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC-CCCCCC
Q 038658 646 SLSSLREIEIYNCSSFVS-FPEV-ALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV-QLPPSL 722 (831)
Q Consensus 646 ~l~~L~~L~L~~~~~l~~-l~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L 722 (831)
.+++|++|++++|..... +|.. ..+++|++|++++|...+..|..+.. +++|++|++++|.-....|.. ..+++|
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT--LHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc--cccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 566666666666532221 2221 12556666666665433333444443 566666666665322222222 233556
Q ss_pred ceEEEecCCCCCccccccCccCCcccccC-ccccceEEEecCCC
Q 038658 723 KNVVIRNCDNVRTLTVEEGIQSSSSRRYT-SSLLEHLHIESCPS 765 (831)
Q Consensus 723 ~~L~l~~c~~l~~l~~~~~~~~~~~~~l~-~~~L~~L~i~~c~~ 765 (831)
++|++++| +++.+ |.++.. ++ + |++|++++++-
T Consensus 524 ~~L~l~~N-~l~~~--p~~~~~-----l~~~--L~~l~l~~N~~ 557 (606)
T 3vq2_A 524 STLDCSFN-RIETS--KGILQH-----FPKS--LAFFNLTNNSV 557 (606)
T ss_dssp CEEECTTS-CCCCE--ESCGGG-----SCTT--CCEEECCSCCC
T ss_pred CEEECCCC-cCccc--CHhHhh-----hccc--CcEEEccCCCc
Confidence 66666554 35554 444433 32 4 66666666543
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.1e-35 Score=333.78 Aligned_cols=480 Identities=12% Similarity=0.083 Sum_probs=298.7
Q ss_pred CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCcc-chhhhccCC
Q 038658 162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYN 239 (831)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~ 239 (831)
++++.|.+. .+.+....|..+.++++|++|+|++|.+..+ |.+|+++++|++|++++|.++.+ |..++++++
T Consensus 33 ~~l~~L~Ls------~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 33 NSTECLEFS------FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TTCCEEECT------TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CcCcEEEcc------CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 367888543 4455554566677999999999999999877 78899999999999999999876 678999999
Q ss_pred ccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeE
Q 038658 240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTI 319 (831)
Q Consensus 240 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i 319 (831)
|++|++++|......|..++++++|++|++++|...+.-+..+..+++|++|. +. .+.+
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--------------------L~-~n~l 165 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD--------------------FQ-NNAI 165 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE--------------------CC-SSCC
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEE--------------------cc-cCcc
Confidence 99999999875544477799999999999999984442223444588888882 22 2233
Q ss_pred cccccccccCCCCcc--eEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCC--------
Q 038658 320 SKLENAQLDGKKNLK--VLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSS-------- 389 (831)
Q Consensus 320 ~~l~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~-------- 389 (831)
..+....+..+++|+ .|++++|..... .........|+.|+++++. .++..+....
T Consensus 166 ~~~~~~~~~~l~~L~~l~L~l~~n~l~~~------------~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~ 231 (606)
T 3t6q_A 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGI------------EPGAFDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLW 231 (606)
T ss_dssp CEECHHHHHTTTTCCSEEEECTTCCCCEE------------CTTTTTTCEEEEEECTTCS--CHHHHHHHTTTCEEEEEE
T ss_pred cccChhhhhhhcccceeEEecCCCccCcc------------ChhHhhhccccccccCCch--hHHHHhhhccccchhhee
Confidence 444445677778888 566655543221 1112223466777766553 1111111000
Q ss_pred -------------------C--CceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcc
Q 038658 390 -------------------F--SNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLE 447 (831)
Q Consensus 390 -------------------~--~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~ 447 (831)
+ .+|+.|++++|.+....+ .++.+++|+.|+++++. +..+
T Consensus 232 ~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~l----------------- 293 (606)
T 3t6q_A 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSEL----------------- 293 (606)
T ss_dssp CCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCC-----------------
T ss_pred chhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCC-----------------
Confidence 0 145555555554443333 24455555555555432 2222
Q ss_pred eeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCC---CCCCcccEEEEccccCc----cccCCCCCccce
Q 038658 448 TLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFP---EHLPALEMLVIGGCEEL----LVSITSLPALSK 520 (831)
Q Consensus 448 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~l----~~~~~~l~~L~~ 520 (831)
|..+..+++|++|++++| .+++..| ..+++|+.|++++|... ...+..+++|++
T Consensus 294 ------------------p~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 294 ------------------PSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp ------------------CSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred ------------------ChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 222445566666666663 3432222 24556666666666422 123556777777
Q ss_pred EEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeee
Q 038658 521 LEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIG 600 (831)
Q Consensus 521 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~ 600 (831)
|++++|....... .......+++|+.|+++++.... .+...+..+++|++|+++
T Consensus 355 L~l~~n~l~~~~~----------------------~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 355 LDLSHDDIETSDC----------------------CNLQLRNLSHLQSLNLSYNEPLS----LKTEAFKECPQLELLDLA 408 (606)
T ss_dssp EECCSSCCCEEEE----------------------STTTTTTCTTCCEEECCSCSCEE----ECTTTTTTCTTCSEEECT
T ss_pred EECCCCccccccC----------------------cchhcccCCCCCEEECCCCcCCc----CCHHHhcCCccCCeEECC
Confidence 7777776433210 01124457778888887776322 344455777888888887
Q ss_pred cCCCcccch-hhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCcc-ccC---CCCCCCccE
Q 038658 601 WCPTLQSLV-AEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVS-FPE---VALPSKVRS 675 (831)
Q Consensus 601 ~c~~l~~l~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~-l~~---~~~~~~L~~ 675 (831)
++ .+.... ...+... ++|++|++++|......|..+..+++|++|++++|...+. ++. ...+++|++
T Consensus 409 ~n-~l~~~~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 409 FT-RLKVKDAQSPFQNL-------HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp TC-CEECCTTCCTTTTC-------TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred CC-cCCCcccchhhhCc-------ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 75 443322 1111111 4788888888887777777788888888888888843221 222 122788888
Q ss_pred EEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC--CCCCCCceEEEecCCCCCccccccCccCCcccccCcc
Q 038658 676 ISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV--QLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSS 753 (831)
Q Consensus 676 L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~ 753 (831)
|++++|...+..|..+.. +++|++|++++|. ++.++.. ...++| .|++++| +++.+. +..+.. +++
T Consensus 481 L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~-~~~~~~-----l~~- 548 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTS--LKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASN-HISIIL-PSLLPI-----LSQ- 548 (606)
T ss_dssp EECTTSCCCEECTTTTTT--CTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSS-CCCCCC-GGGHHH-----HHT-
T ss_pred EECCCCccCccChhhhcc--ccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCC-cccccC-Hhhccc-----CCC-
Confidence 888887655555666665 8888888888874 4433322 344677 8888875 555542 444444 666
Q ss_pred ccceEEEecCCCc
Q 038658 754 LLEHLHIESCPSL 766 (831)
Q Consensus 754 ~L~~L~i~~c~~l 766 (831)
|++|++++|+-.
T Consensus 549 -L~~L~l~~N~~~ 560 (606)
T 3t6q_A 549 -QRTINLRQNPLD 560 (606)
T ss_dssp -SSEEECTTCCEE
T ss_pred -CCEEeCCCCCcc
Confidence 999999987644
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.2e-34 Score=323.37 Aligned_cols=208 Identities=21% Similarity=0.173 Sum_probs=137.7
Q ss_pred cccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccC
Q 038658 183 SILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGN 260 (831)
Q Consensus 183 ~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~ 260 (831)
.+|..++ +.|++|++++|.++.+ |.+|+++++||+|++++|+++.+| .+++++++|++|++++|......|..+++
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 4455444 6789999999998877 678899999999999999988775 67899999999999998754444555899
Q ss_pred cccccccccCCCCCcc-cccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEE
Q 038658 261 LIKLHHLNNSNTDSLE-EMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLR 339 (831)
Q Consensus 261 L~~L~~L~l~~~~~~~-~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~ 339 (831)
+++|++|++++|...+ ..|..++++++|++|...... .+..+....+.++++|++|+++
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~--------------------~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE--------------------TFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS--------------------SCCEECTTTTTTCCEEEEEEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc--------------------cccccCHhhhhcccccCeeecc
Confidence 9999999999988433 356678888888877322111 0112222345566677777776
Q ss_pred eecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCC----CCCCCCCCC
Q 038658 340 WTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTT----LPSVGQLPS 415 (831)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~----~~~l~~l~~ 415 (831)
+|..... .+..+..+++|+.|+++++....+|.++.. .+++|+.|++++|.+.+. .+....+++
T Consensus 157 ~n~l~~~-----------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 224 (549)
T 2z81_A 157 ALSLRNY-----------QSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224 (549)
T ss_dssp ETTCCEE-----------CTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred CCccccc-----------ChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhhc
Confidence 6654321 234455666777777777766665555422 256777777777766542 112334556
Q ss_pred cceEEeccc
Q 038658 416 LKHLAVRRM 424 (831)
Q Consensus 416 L~~L~L~~~ 424 (831)
|+.|+++++
T Consensus 225 L~~L~l~~n 233 (549)
T 2z81_A 225 MKKLAFRGS 233 (549)
T ss_dssp CCEEEEESC
T ss_pred ccceecccc
Confidence 666666554
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=323.56 Aligned_cols=497 Identities=15% Similarity=0.092 Sum_probs=295.7
Q ss_pred CCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCC-CCcc-chhhhccCCccEEeecCcCccccccccccCcccccc
Q 038658 190 KLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQ-IRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHH 266 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 266 (831)
-.+++++|+|++|.++.+ |.+|+++++|++|+|++|. +..+ |.+++++++|++|+|++|......|..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 346899999999999987 7889999999999999994 5577 678999999999999998866667889999999999
Q ss_pred cccCCCCCcccccCC--CCCccccccccceEecCCCCCcchhhhccccccCeeeEccccc-ccccCCCCcceEEEEeecC
Q 038658 267 LNNSNTDSLEEMPLG--IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLEN-AQLDGKKNLKVLMLRWTNS 343 (831)
Q Consensus 267 L~l~~~~~~~~~p~~--~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~-~~l~~~~~L~~L~l~~~~~ 343 (831)
|++++|...+.+|.. ++++++|++|+.. .+.+..+.. ..+.++++|+.|+++.|..
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls---------------------~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLS---------------------KNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEE---------------------SCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECC---------------------CCcccccccchhHhhCCCCCEEECCCCcC
Confidence 999999866656665 8899999988321 112222222 4578889999999988765
Q ss_pred CCCCChhhhhhHHhhhcCCCCC--CCccEEEEeeecCCC-CCccCCCCCCC------ceeEEEEecCCCCCCCC-CC---
Q 038658 344 TDGSSLREAETQKGVLDMLKPH--KNLEQFFISGYGGTK-FPIWLGDSSFS------NLVTLKFEDCGMCTTLP-SV--- 410 (831)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~-~p~~~~~~~~~------~L~~L~l~~~~~~~~~~-~l--- 410 (831)
... ....+..+ ++|+.|++++|.... .|..+.. ++ +|+.|++++|.+....+ .+
T Consensus 161 ~~~-----------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 161 FLV-----------CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK--CMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp CCC-----------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS--SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred Cee-----------CHHHcccccCCccceEECCCCccccccccchhh--cCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 432 11122222 688888998887654 3333322 22 38899999887766555 22
Q ss_pred CCCCCcceEEeccccCceeeCccccCC---CC--CCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcC
Q 038658 411 GQLPSLKHLAVRRMSRVRRLGSEFYGN---DT--PIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSK 485 (831)
Q Consensus 411 ~~l~~L~~L~L~~~~~l~~~~~~~~~~---~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 485 (831)
...+.++.+.+..+..-.......... .. ....++|+.|++.+.. +... .+..+..+++|+.|++++| +
T Consensus 228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~----~~~~~~~l~~L~~L~L~~n-~ 301 (844)
T 3j0a_A 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSL----NSRVFETLKDLKVLNLAYN-K 301 (844)
T ss_dssp SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEE----CSCCSSSCCCCCEEEEESC-C
T ss_pred cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-cccc----ChhhhhcCCCCCEEECCCC-c
Confidence 233567777776321111000000000 00 0113567777776532 1111 1222556777777777773 5
Q ss_pred cccCCCC---CCCcccEEEEccccCc---cccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCC
Q 038658 486 LKGTFPE---HLPALEMLVIGGCEEL---LVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPL 559 (831)
Q Consensus 486 l~~~~p~---~l~~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (831)
+++..|. .+++|+.|++++|... ...+..+++|+.|++++|..... .+..
T Consensus 302 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~------------------------~~~~ 357 (844)
T 3j0a_A 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII------------------------QDQT 357 (844)
T ss_dssp CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC------------------------CSSC
T ss_pred CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc------------------------Chhh
Confidence 5433332 4567777777776521 23455667777777777653221 1112
Q ss_pred CCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcc
Q 038658 560 KPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVK 639 (831)
Q Consensus 560 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 639 (831)
+..+++|+.|+++++.- +. +..+++|+.|.++++ ++..++. ...+++.|++++|.....
T Consensus 358 ~~~l~~L~~L~Ls~N~l-~~--------i~~~~~L~~L~l~~N-~l~~l~~-----------~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNAL-TT--------IHFIPSIPDIFLSGN-KLVTLPK-----------INLTANLIHLSENRLENL 416 (844)
T ss_dssp SCSCCCCCEEEEETCCS-CC--------CSSCCSCSEEEEESC-CCCCCCC-----------CCTTCCEEECCSCCCCSS
T ss_pred hcCCCCCCEEECCCCCC-Cc--------ccCCCCcchhccCCC-Ccccccc-----------cccccceeecccCccccC
Confidence 34466777777776652 11 123666777777763 4554432 124577777777664331
Q ss_pred -cccccCCCCCCCeEEEecCCCCccccCCC---CCCCccEEEEecCCCC-----cccccccccCCCCCcCeEEEccCCCc
Q 038658 640 -LPQSLLSLSSLREIEIYNCSSFVSFPEVA---LPSKVRSISIHRCDAL-----KSLPEAWMCDANLSLEILTISRCHSL 710 (831)
Q Consensus 640 -l~~~l~~l~~L~~L~L~~~~~l~~l~~~~---~~~~L~~L~l~~c~~l-----~~l~~~~~~~~l~~L~~L~l~~c~~l 710 (831)
.+..+..+++|++|++++| .++.++... .+++|+.|++++|..- ...+..+.. +++|+.|++++| .+
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~--l~~L~~L~Ls~N-~l 492 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG--LSHLQVLYLNHN-YL 492 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC--BCCEECCCCCHH-HH
T ss_pred chhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCccccccccccchhhhcC--cccccEEECCCC-cc
Confidence 1223446677777777776 344333221 1567777777775432 111223333 667777777775 45
Q ss_pred ceeccC--CCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCCcccccchhhhhhhhhccccCCCC
Q 038658 711 TYIAEV--QLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSLTCIFSKNELLATLESLEVGNLP 788 (831)
Q Consensus 711 ~~l~~~--~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~l~~i~~~~~~~~~l~~l~~~~l~ 788 (831)
+.++.. ..+++|++|+++++ +++.+ +.+.. .++ |+.|+++++. +.. + +...+
T Consensus 493 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~l--~~~~~------~~~--L~~L~Ls~N~-l~~-~------------~~~~~- 546 (844)
T 3j0a_A 493 NSLPPGVFSHLTALRGLSLNSN-RLTVL--SHNDL------PAN--LEILDISRNQ-LLA-P------------NPDVF- 546 (844)
T ss_dssp TTCCTTSSSSCCSCSEEEEESC-CCSSC--CCCCC------CSC--CCEEEEEEEC-CCC-C------------CSCCC-
T ss_pred cccChhHccchhhhheeECCCC-CCCcc--Chhhh------hcc--ccEEECCCCc-CCC-C------------ChhHh-
Confidence 555543 23467777777664 56555 22211 123 7777777643 222 1 22223
Q ss_pred CCcCeeEEccCCc
Q 038658 789 PSLKSLEVLSCSK 801 (831)
Q Consensus 789 ~~L~~L~l~~~~~ 801 (831)
++|+.|+++++|.
T Consensus 547 ~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 547 VSLSVLDITHNKF 559 (844)
T ss_dssp SSCCEEEEEEECC
T ss_pred CCcCEEEecCCCc
Confidence 5677777776654
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-33 Score=320.83 Aligned_cols=431 Identities=17% Similarity=0.181 Sum_probs=252.8
Q ss_pred CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcccc----------------------------------
Q 038658 162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL---------------------------------- 207 (831)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l---------------------------------- 207 (831)
.+++.|.+. .+.+.+.+|+.+..+++|++|+|++|.+...
T Consensus 81 ~~V~~L~L~------~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~ 154 (636)
T 4eco_A 81 GRVTGLSLE------GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP 154 (636)
T ss_dssp CCEEEEECT------TSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCG
T ss_pred CCEEEEEec------CcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCc
Confidence 356666443 3456778888888999999999988864211
Q ss_pred Ccccc-------------------CCCCCceeecC--CCCCCccchhhhccCCccEEeecCcCcccc-------------
Q 038658 208 PDSIG-------------------DLRYLRYLNLS--GTQIRTLPESVNKLYNLHTLSLEGCRGLRK------------- 253 (831)
Q Consensus 208 p~~~~-------------------~l~~Lr~L~L~--~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~------------- 253 (831)
|..+. ....++.+.+. +|+++.+|.+++++++|++|++++|...+.
T Consensus 155 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 234 (636)
T 4eco_A 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234 (636)
T ss_dssp GGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred hhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccch
Confidence 11111 11122222222 456777898999999999999999874443
Q ss_pred ----cccccc--CcccccccccCCCCCcccccCCCCCccccccccceEecCCCC-CcchhhhccccccCeeeEccccccc
Q 038658 254 ----LCAGMG--NLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSG-SRLRELKLLTHLRGTLTISKLENAQ 326 (831)
Q Consensus 254 ----lp~~i~--~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~-~~~~~l~~L~~L~~~l~i~~l~~~~ 326 (831)
+|..++ ++++|++|++++|...+.+|..++++++|++|.........+ .....+.
T Consensus 235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~------------------ 296 (636)
T 4eco_A 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ------------------ 296 (636)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH------------------
T ss_pred hcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH------------------
Confidence 888888 999999999999988888888888888888772211100000 0000000
Q ss_pred ccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCc--cCCCCCCCceeEEEEecCCCC
Q 038658 327 LDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPI--WLGDSSFSNLVTLKFEDCGMC 404 (831)
Q Consensus 327 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~l~~~~~~ 404 (831)
.+..+..+++|+.|++++|.+..+|. ++.. +++|+.|++++|.+.
T Consensus 297 -------------------------------~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~--l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 297 -------------------------------ALADAPVGEKIQIIYIGYNNLKTFPVETSLQK--MKKLGMLECLYNQLE 343 (636)
T ss_dssp -------------------------------HHHHSGGGGTCCEEECCSSCCSSCCCHHHHTT--CTTCCEEECCSCCCE
T ss_pred -------------------------------hhhccccCCCCCEEECCCCcCCccCchhhhcc--CCCCCEEeCcCCcCc
Confidence 01112334677778888887777777 6665 788888888888887
Q ss_pred CCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCc-ccEEeEcCC
Q 038658 405 TTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPK-LRELEVIGC 483 (831)
Q Consensus 405 ~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-L~~L~l~~c 483 (831)
+.+|.++.+++|+.|+++++. +..++.. +..+++ |++|++++
T Consensus 344 g~ip~~~~l~~L~~L~L~~N~-l~~lp~~-----------------------------------l~~l~~~L~~L~Ls~- 386 (636)
T 4eco_A 344 GKLPAFGSEIKLASLNLAYNQ-ITEIPAN-----------------------------------FCGFTEQVENLSFAH- 386 (636)
T ss_dssp EECCCCEEEEEESEEECCSSE-EEECCTT-----------------------------------SEEECTTCCEEECCS-
T ss_pred cchhhhCCCCCCCEEECCCCc-cccccHh-----------------------------------hhhhcccCcEEEccC-
Confidence 677777778888888887753 2232211 223444 55555555
Q ss_pred cCcccCCCCCCCcccEEEEccccCccccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCC
Q 038658 484 SKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRL 563 (831)
Q Consensus 484 ~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 563 (831)
+.++ .+|..+.. ..+++|+.|++++|........ ..+. .......+
T Consensus 387 N~l~-~lp~~~~~----------------~~l~~L~~L~Ls~N~l~~~~p~--~l~~---------------~~~~~~~~ 432 (636)
T 4eco_A 387 NKLK-YIPNIFDA----------------KSVSVMSAIDFSYNEIGSVDGK--NFDP---------------LDPTPFKG 432 (636)
T ss_dssp SCCS-SCCSCCCT----------------TCSSCEEEEECCSSCTTTTTTC--SSCT---------------TCSSCCCC
T ss_pred CcCc-ccchhhhh----------------cccCccCEEECcCCcCCCcchh--hhcc---------------cccccccC
Confidence 2344 44432110 0011233333333321110000 0000 00000012
Q ss_pred CCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccc
Q 038658 564 PKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQS 643 (831)
Q Consensus 564 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~ 643 (831)
++|+.|+++++.-- ..+...+..+++|++|+++++ .+..++...+........-.++|++|++++|... .+|..
T Consensus 433 ~~L~~L~Ls~N~l~----~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 433 INVSSINLSNNQIS----KFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp CCEEEEECCSSCCC----SCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred CCCCEEECcCCccC----cCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 34444444444311 133444445666666666663 4445543322211000000026888888888755 67777
Q ss_pred cC--CCCCCCeEEEecCCCCccccCCCC-CCCccEEEEe------cCCCCcccccccccCCCCCcCeEEEccCCCcceec
Q 038658 644 LL--SLSSLREIEIYNCSSFVSFPEVAL-PSKVRSISIH------RCDALKSLPEAWMCDANLSLEILTISRCHSLTYIA 714 (831)
Q Consensus 644 l~--~l~~L~~L~L~~~~~l~~l~~~~~-~~~L~~L~l~------~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~ 714 (831)
+. .+++|++|+|++| .++.+|.... +++|++|+++ +|...+.+|..+.. +++|++|++++|. ++.+|
T Consensus 507 ~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~-l~~ip 582 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL--CPSLTQLQIGSND-IRKVN 582 (636)
T ss_dssp GSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSC-CCBCC
T ss_pred hhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhc--CCCCCEEECCCCc-CCccC
Confidence 76 7888888888888 4555765433 7888888884 45556778888877 9999999999975 58888
Q ss_pred cCCCCCCCceEEEecCC
Q 038658 715 EVQLPPSLKNVVIRNCD 731 (831)
Q Consensus 715 ~~~~~~~L~~L~l~~c~ 731 (831)
.. +.++|++|++++|+
T Consensus 583 ~~-~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 583 EK-ITPNISVLDIKDNP 598 (636)
T ss_dssp SC-CCTTCCEEECCSCT
T ss_pred Hh-HhCcCCEEECcCCC
Confidence 65 44799999999874
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.5e-33 Score=314.24 Aligned_cols=461 Identities=17% Similarity=0.134 Sum_probs=284.5
Q ss_pred CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccchh-hhccCC
Q 038658 162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPES-VNKLYN 239 (831)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~ 239 (831)
++|++|.+.+ +.+....|..+..+++|++|++++|.++.+ |.+|+.+++|++|++++|.++.+|.. ++++++
T Consensus 26 ~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSF------NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCS------SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcC------CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 5778875433 344444455667899999999999998887 47789999999999999999988754 899999
Q ss_pred ccEEeecCcCccc-cccccccCcccccccccCCCCCccccc-CCCCCccccccccceEecCCCCCcchhhhccccccCee
Q 038658 240 LHTLSLEGCRGLR-KLCAGMGNLIKLHHLNNSNTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTL 317 (831)
Q Consensus 240 L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l 317 (831)
|++|++++|.... ..|..++++++|++|++++|...+.+| ..++++++|++|.... +
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~---------------------n 158 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA---------------------L 158 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE---------------------T
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC---------------------C
Confidence 9999999986443 356778999999999999998677776 4688888888883221 1
Q ss_pred eEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCC---CccCCCCCCCcee
Q 038658 318 TISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKF---PIWLGDSSFSNLV 394 (831)
Q Consensus 318 ~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---p~~~~~~~~~~L~ 394 (831)
.+.......+..+++|+.|+++++..... . . ..+..+++|+.|++++|....+ |.++.. .+++|+
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~---~-----~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~L~ 226 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFL---L-----E---IFADILSSVRYLELRDTNLARFQFSPLPVDE-VSSPMK 226 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBSTTH---H-----H---HHHHSTTTBSEEEEESCBCTTCCCCCCSSCC-CCCCCC
T ss_pred cccccChhhhhccccCceEecccCccccc---c-----h---hhHhhcccccEEEccCCccccccccccchhh-hhhccc
Confidence 12222334566677888888877654211 0 0 0123467889999998887765 223322 367899
Q ss_pred EEEEecCCCCCCCC-----CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCC
Q 038658 395 TLKFEDCGMCTTLP-----SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGV 469 (831)
Q Consensus 395 ~L~l~~~~~~~~~~-----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 469 (831)
.|++++|.+.+..+ .+..+++|+.+++++|..................+++|+.|.+.++...........+...
T Consensus 227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~ 306 (549)
T 2z81_A 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306 (549)
T ss_dssp EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred ceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhh
Confidence 99998887653222 3456778888988887522211000000011234677777777664321111100100001
Q ss_pred CCCCcccEEeEcCCcCcccCCCC----CCCcccEEEEccccCcc------ccCCCCCccceEEEcCCCCccccccccccC
Q 038658 470 EGFPKLRELEVIGCSKLKGTFPE----HLPALEMLVIGGCEELL------VSITSLPALSKLEIGGCKKVVWRSETDHLG 539 (831)
Q Consensus 470 ~~~~~L~~L~l~~c~~l~~~~p~----~l~~L~~L~l~~~~~l~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 539 (831)
..+++|++|++++| +++ .+|. .+++|+.|++++|.... ..+..+++|+.|++++|.......
T Consensus 307 ~~~~~L~~L~l~~n-~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 378 (549)
T 2z81_A 307 SLLEKVKRITVENS-KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK------ 378 (549)
T ss_dssp HHSTTCCEEEEESS-CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH------
T ss_pred hhcccceEEEeccC-ccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc------
Confidence 12467888888884 565 6664 46778888887776432 124567777777777776432110
Q ss_pred CCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhh
Q 038658 540 SQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQL 619 (831)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l 619 (831)
.+..+..+++|+.|++++|. ++. .|.. +..+++|++|+++++ .+..++.
T Consensus 379 ----------------~~~~~~~l~~L~~L~Ls~N~-l~~---lp~~-~~~~~~L~~L~Ls~N-~l~~l~~--------- 427 (549)
T 2z81_A 379 ----------------TGEILLTLKNLTSLDISRNT-FHP---MPDS-CQWPEKMRFLNLSST-GIRVVKT--------- 427 (549)
T ss_dssp ----------------HHHHGGGCTTCCEEECTTCC-CCC---CCSC-CCCCTTCCEEECTTS-CCSCCCT---------
T ss_pred ----------------chhhhhcCCCCCEEECCCCC-Ccc---CChh-hcccccccEEECCCC-Ccccccc---------
Confidence 00012346777777777764 222 3332 355667777777764 4554432
Q ss_pred hcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCc
Q 038658 620 CELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSL 699 (831)
Q Consensus 620 ~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L 699 (831)
..|++|++|++++|...+ + ...+++|++|++++| .++.+|....+++|++|++++|...+..|..+.. +++|
T Consensus 428 -~~~~~L~~L~Ls~N~l~~-~---~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L 499 (549)
T 2z81_A 428 -CIPQTLEVLDVSNNNLDS-F---SLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDR--LTSL 499 (549)
T ss_dssp -TSCTTCSEEECCSSCCSC-C---CCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGG--CTTC
T ss_pred -hhcCCceEEECCCCChhh-h---cccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCCccCCcCHHHHhc--Cccc
Confidence 223467777777765433 2 245667777777776 5566666555667777777765433333333444 6666
Q ss_pred CeEEEccCC
Q 038658 700 EILTISRCH 708 (831)
Q Consensus 700 ~~L~l~~c~ 708 (831)
+.|++++|+
T Consensus 500 ~~L~l~~N~ 508 (549)
T 2z81_A 500 QKIWLHTNP 508 (549)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 666666665
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-32 Score=321.37 Aligned_cols=494 Identities=15% Similarity=0.100 Sum_probs=252.8
Q ss_pred cCCCeeEEEEEccccCccccccccccCCcceEEccccccCCCcccccccc-cccccCCcceEEEEeCCCCcccc-Ccccc
Q 038658 135 FSKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSI-LPKLFKLQRLRVFSLCGYWISEL-PDSIG 212 (831)
Q Consensus 135 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~i~~l-p~~~~ 212 (831)
.+..++++.+..+.+..+. ...+.++++|++|.+.. +.....+ |..+.++++|++|+|++|.+..+ |..|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~------n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGS------QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECT------TCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCC------CCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 5566777777766544322 24566677777775433 2223444 33344777777777777777665 66777
Q ss_pred CCCCCceeecCCCCCCc-cchh--hhccCCccEEeecCcCcccccc-ccccCcccccccccCCCCCcccccCCCCCc--c
Q 038658 213 DLRYLRYLNLSGTQIRT-LPES--VNKLYNLHTLSLEGCRGLRKLC-AGMGNLIKLHHLNNSNTDSLEEMPLGIGKL--T 286 (831)
Q Consensus 213 ~l~~Lr~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L--~ 286 (831)
++++|++|+|++|.+.. +|.. ++++++|++|++++|......| ..++++++|++|++++|.+.+..|..++.+ +
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 77777777777777764 4443 6777777777777765443332 457777777777777776555555556555 5
Q ss_pred ccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCC------CcceEEEEeecCCCCCChhhh--------
Q 038658 287 CLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKK------NLKVLMLRWTNSTDGSSLREA-------- 352 (831)
Q Consensus 287 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~-------- 352 (831)
+|+.|....... .......+..+. .|+.|+++.|...........
T Consensus 175 ~L~~L~L~~n~l---------------------~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 175 TLSFFSLAANSL---------------------YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp SSCCCEECCSBS---------------------CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred ccceEECCCCcc---------------------ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 566552211110 000001111111 255555544432111000000
Q ss_pred -----------------hhHHhhhcCCCC--CCCccEEEEeeecCCCCC-ccCCCCCCCceeEEEEecCCCCCCCC-CCC
Q 038658 353 -----------------ETQKGVLDMLKP--HKNLEQFFISGYGGTKFP-IWLGDSSFSNLVTLKFEDCGMCTTLP-SVG 411 (831)
Q Consensus 353 -----------------~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~p-~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~ 411 (831)
.........+.. .++|+.|++++|.+..++ ..+. .+++|+.|++++|.+.+..+ .+.
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~ 311 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--TLKDLKVLNLAYNKINKIADEAFY 311 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--SCCCCCEEEEESCCCCEECTTTTT
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh--cCCCCCEEECCCCcCCCCChHHhc
Confidence 000000111111 245666666665554432 2232 25566666666666554444 455
Q ss_pred CCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCC
Q 038658 412 QLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFP 491 (831)
Q Consensus 412 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p 491 (831)
.+++|+.|+++++. +..+.... ...+++|+.|++.+. .+... .+..+..+++|++|++++ +.++ .++
T Consensus 312 ~l~~L~~L~Ls~N~-l~~~~~~~-----~~~l~~L~~L~L~~N-~i~~~----~~~~~~~l~~L~~L~Ls~-N~l~-~i~ 378 (844)
T 3j0a_A 312 GLDNLQVLNLSYNL-LGELYSSN-----FYGLPKVAYIDLQKN-HIAII----QDQTFKFLEKLQTLDLRD-NALT-TIH 378 (844)
T ss_dssp TCSSCCEEEEESCC-CSCCCSCS-----CSSCTTCCEEECCSC-CCCCC----CSSCSCSCCCCCEEEEET-CCSC-CCS
T ss_pred CCCCCCEEECCCCC-CCccCHHH-----hcCCCCCCEEECCCC-CCCcc----ChhhhcCCCCCCEEECCC-CCCC-ccc
Confidence 56666666665543 22221111 122555555555543 11111 111234455666666655 2444 333
Q ss_pred CCCCcccEEEEccccCccccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEE
Q 038658 492 EHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEI 571 (831)
Q Consensus 492 ~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 571 (831)
. +++|+.|++++|.... .-....+++.|++++|........ .....+++|+.|++
T Consensus 379 ~-~~~L~~L~l~~N~l~~-l~~~~~~l~~L~ls~N~l~~l~~~-----------------------~~~~~l~~L~~L~L 433 (844)
T 3j0a_A 379 F-IPSIPDIFLSGNKLVT-LPKINLTANLIHLSENRLENLDIL-----------------------YFLLRVPHLQILIL 433 (844)
T ss_dssp S-CCSCSEEEEESCCCCC-CCCCCTTCCEEECCSCCCCSSTTH-----------------------HHHTTCTTCCEEEE
T ss_pred C-CCCcchhccCCCCccc-ccccccccceeecccCccccCchh-----------------------hhhhcCCccceeeC
Confidence 2 5555555555554221 111134455555555542211000 00124677777777
Q ss_pred ccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCC
Q 038658 572 SNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLR 651 (831)
Q Consensus 572 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~ 651 (831)
+++..... .+......+++|+.|+++++ .+...+..... ...+..+ ++|++|++++|...+..|..+..+++|+
T Consensus 434 s~N~l~~~---~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~-~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 507 (844)
T 3j0a_A 434 NQNRFSSC---SGDQTPSENPSLEQLFLGEN-MLQLAWETELC-WDVFEGL-SHLQVLYLNHNYLNSLPPGVFSHLTALR 507 (844)
T ss_dssp ESCCCCCC---CSSSSSCSCTTCCBCEEESC-CCSSSCCSCCC-SSCSSCB-CCEECCCCCHHHHTTCCTTSSSSCCSCS
T ss_pred CCCccccc---ccccccccCCccccccCCCC-ccccccccccc-hhhhcCc-ccccEEECCCCcccccChhHccchhhhh
Confidence 77663221 12223345677777777773 44322211000 0001112 4677777777776555556677777788
Q ss_pred eEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCC
Q 038658 652 EIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCH 708 (831)
Q Consensus 652 ~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 708 (831)
+|+|++| .++.++...+.++|+.|++++|...+..|.. +++|+.|++++++
T Consensus 508 ~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~-----~~~L~~l~l~~Np 558 (844)
T 3j0a_A 508 GLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPDV-----FVSLSVLDITHNK 558 (844)
T ss_dssp EEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCCCCSCC-----CSSCCEEEEEEEC
T ss_pred eeECCCC-CCCccChhhhhccccEEECCCCcCCCCChhH-----hCCcCEEEecCCC
Confidence 8888777 6666766666677777887776544444422 4567777777654
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-32 Score=316.28 Aligned_cols=371 Identities=17% Similarity=0.146 Sum_probs=216.8
Q ss_pred CCCCccchhhhccCCccEEeecCcCccc-----------------ccccccc--CcccccccccCCCCCcccccCCCCCc
Q 038658 225 TQIRTLPESVNKLYNLHTLSLEGCRGLR-----------------KLCAGMG--NLIKLHHLNNSNTDSLEEMPLGIGKL 285 (831)
Q Consensus 225 ~~i~~lp~~i~~L~~L~~L~l~~~~~~~-----------------~lp~~i~--~L~~L~~L~l~~~~~~~~~p~~~~~L 285 (831)
|+++.+|.+++++++|++|+|++|...+ .+|..++ ++++|++|++++|...+.+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5566689999999999999999987555 2888887 99999999999998888889888888
Q ss_pred cccccccceEecCCCC-CcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCC
Q 038658 286 TCLQTLCNFVVGKDSG-SRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKP 364 (831)
Q Consensus 286 ~~L~~L~~~~~~~~~~-~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 364 (831)
++|+.|.........+ .....+..+ ...+..
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L------------------------------------------------~~~~~~ 546 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRL------------------------------------------------ADDEDT 546 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHH------------------------------------------------HHCTTT
T ss_pred CCCCEEECcCCCCcccccchHHHHhh------------------------------------------------hhcccc
Confidence 8888772211100000 000001000 013445
Q ss_pred CCCccEEEEeeecCCCCCc--cCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCC
Q 038658 365 HKNLEQFFISGYGGTKFPI--WLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIP 442 (831)
Q Consensus 365 ~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 442 (831)
+++|+.|++++|.+..+|. ++.. +++|+.|++++|.+. .+|.++.+++|+.|+++++.. ..++.
T Consensus 547 l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l-~~lp~---------- 612 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQI-EEIPE---------- 612 (876)
T ss_dssp TTTCCEEECCSSCCCBCCCHHHHTT--CTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCC-SCCCT----------
T ss_pred cCCccEEEeeCCcCCccCChhhhhc--CCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCcc-ccchH----------
Confidence 5677777777777777777 6654 777888888877776 666777777777777776532 12211
Q ss_pred CCCcceeeccccccccccccCCCCCCCCCCCc-ccEEeEcCCcCcccCCCCCCCcccEEEEccccCccccCCCCCccceE
Q 038658 443 FPCLETLRFENLLEWEDWIPHGSTQGVEGFPK-LRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKL 521 (831)
Q Consensus 443 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L 521 (831)
.+..+++ |+.|++++| .++ .+|..+.. ...++|+.|
T Consensus 613 -------------------------~l~~l~~~L~~L~Ls~N-~L~-~lp~~~~~----------------~~~~~L~~L 649 (876)
T 4ecn_A 613 -------------------------DFCAFTDQVEGLGFSHN-KLK-YIPNIFNA----------------KSVYVMGSV 649 (876)
T ss_dssp -------------------------TSCEECTTCCEEECCSS-CCC-SCCSCCCT----------------TCSSCEEEE
T ss_pred -------------------------HHhhccccCCEEECcCC-CCC-cCchhhhc----------------cccCCCCEE
Confidence 1233455 666666553 344 44432110 001123333
Q ss_pred EEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeec
Q 038658 522 EIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGW 601 (831)
Q Consensus 522 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 601 (831)
++++|......... .........++|+.|++++|... ..+...+..+++|+.|++++
T Consensus 650 ~Ls~N~l~g~ip~l-------------------~~~l~~~~~~~L~~L~Ls~N~L~----~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 650 DFSYNKIGSEGRNI-------------------SCSMDDYKGINASTVTLSYNEIQ----KFPTELFATGSPISTIILSN 706 (876)
T ss_dssp ECCSSCTTTTSSSC-------------------SSCTTTCCCCCEEEEECCSSCCC----SCCHHHHHTTCCCSEEECCS
T ss_pred ECcCCcCCCccccc-------------------hhhhccccCCCcCEEEccCCcCC----ccCHHHHccCCCCCEEECCC
Confidence 33333211100000 00000001224444444444311 13333344556666666665
Q ss_pred CCCcccchhhhhhhHhh-hhcccCCccEEEeccCCCCcccccccC--CCCCCCeEEEecCCCCccccCCCC-CCCccEEE
Q 038658 602 CPTLQSLVAEEEKDQQQ-LCELSCRLEYLLLNDCKGLVKLPQSLL--SLSSLREIEIYNCSSFVSFPEVAL-PSKVRSIS 677 (831)
Q Consensus 602 c~~l~~l~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~l~~~l~--~l~~L~~L~L~~~~~l~~l~~~~~-~~~L~~L~ 677 (831)
+ .+..++...+..... ...+ ++|+.|++++|... .+|..+. .+++|+.|+|++| .++.+|.... +++|+.|+
T Consensus 707 N-~L~~ip~~~~~~~~~~l~nl-~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 707 N-LMTSIPENSLKPKDGNYKNT-YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFG 782 (876)
T ss_dssp C-CCSCCCTTSSSCTTSCCTTG-GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEE
T ss_pred C-cCCccChHHhcccccccccc-CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEE
Confidence 3 455554332221100 0000 26778888887644 6777766 7788888888887 4555664333 77888888
Q ss_pred Eec------CCCCcccccccccCCCCCcCeEEEccCCCcceeccCCCCCCCceEEEecCC
Q 038658 678 IHR------CDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCD 731 (831)
Q Consensus 678 l~~------c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 731 (831)
+++ |...+.+|..+.. +++|+.|++++|. ++.+|.. +.++|+.|++++|+
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l~~--L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGITT--CPSLIQLQIGSND-IRKVDEK-LTPQLYILDIADNP 838 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSC-CCBCCSC-CCSSSCEEECCSCT
T ss_pred CCCCCCcccccccccChHHHhc--CCCCCEEECCCCC-CCccCHh-hcCCCCEEECCCCC
Confidence 865 5556677877777 8999999999975 4888865 45789999998875
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=2.5e-31 Score=302.43 Aligned_cols=478 Identities=16% Similarity=0.119 Sum_probs=214.5
Q ss_pred CCCeeEEEEEccccCccccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccC-ccccCC
Q 038658 136 SKNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELP-DSIGDL 214 (831)
Q Consensus 136 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l 214 (831)
+..++++.+..+....+. ...+.++++|++|.+.+ +.+....+..+.++++|++|++++|.++.+| ..|+.+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~------n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSR------CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp CSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTT------CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cccccEEEccCCccCccC-hhHhhCCCCceEEECCC------CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 344555555554433221 12445555566554332 2222222222335566666666666655553 455566
Q ss_pred CCCceeecCCCCCCccch-hhhccCCccEEeecCcCccc-cccccccCcccccccccCCCCCcccccCCCCCcccccccc
Q 038658 215 RYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLR-KLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLC 292 (831)
Q Consensus 215 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~ 292 (831)
++|++|++++|.++.+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+++|+.+.
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 666666666666655543 45566666666666554332 2455566666666666666553333333444444442110
Q ss_pred -ceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEE
Q 038658 293 -NFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQF 371 (831)
Q Consensus 293 -~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 371 (831)
... +. ...+..+....+... +|+.|++++|..... .....+..+++++..
T Consensus 180 ~~L~-----------------l~-~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~----------~~~~~~~~l~~l~~~ 230 (570)
T 2z63_A 180 LSLD-----------------LS-LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN----------VMKTCIQGLAGLEVH 230 (570)
T ss_dssp CEEE-----------------CT-TCCCCEECTTTTTTC-EEEEEEEESCCSCTT----------HHHHHHHTTTTCEEE
T ss_pred hhcc-----------------cC-CCCceecCHHHhccC-cceeEeccccccccc----------chhhhhcCcccccee
Confidence 000 00 112222333334333 677777766532111 011122334445444
Q ss_pred EEeeecCC------CCCccCCCCCC--CceeEEEEecC-CCCCCCC-CCCCCCCcceEEeccccCceeeCccccCCCCCC
Q 038658 372 FISGYGGT------KFPIWLGDSSF--SNLVTLKFEDC-GMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPI 441 (831)
Q Consensus 372 ~l~~~~~~------~~p~~~~~~~~--~~L~~L~l~~~-~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 441 (831)
.+...... .++.+... .+ -.++.+++.++ .+.+..+ .+..+++|+.|+++++. +..++..+ .
T Consensus 231 ~l~~~~~~~~~~l~~~~~~~~~-~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~------~ 302 (570)
T 2z63_A 231 RLVLGEFRNEGNLEKFDKSALE-GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFS------Y 302 (570)
T ss_dssp EEEEEECCCCSSCEECCTTTTG-GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCC------S
T ss_pred eeccccccCchhhhhcchhhhc-cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhh------c
Confidence 44322211 11111110 01 13566667666 3344444 56777888888887753 22222111 1
Q ss_pred CCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCC-CCCCcccEEEEccccCc-----cccCCCC
Q 038658 442 PFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFP-EHLPALEMLVIGGCEEL-----LVSITSL 515 (831)
Q Consensus 442 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~L~l~~~~~l-----~~~~~~l 515 (831)
.+ +|+.|.+.++.-. ..+ ...+++|++|++++|. +.+.++ ..+++|+.|++++|... ...+..+
T Consensus 303 ~~-~L~~L~l~~n~~~------~l~--~~~l~~L~~L~l~~n~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 372 (570)
T 2z63_A 303 NF-GWQHLELVNCKFG------QFP--TLKLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372 (570)
T ss_dssp CC-CCSEEEEESCBCS------SCC--BCBCSSCCEEEEESCB-SCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred cC-CccEEeeccCccc------ccC--cccccccCEEeCcCCc-cccccccccCCCCCEEeCcCCccCcccccccccccc
Confidence 12 4444444442110 011 1234555555555532 222222 23444444444444311 1122334
Q ss_pred CccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCcc
Q 038658 516 PALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLK 595 (831)
Q Consensus 516 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 595 (831)
++|++|+++++.... .+.. +..+++|+
T Consensus 373 ------------------------------------------------~~L~~L~l~~n~l~~----~~~~-~~~l~~L~ 399 (570)
T 2z63_A 373 ------------------------------------------------TSLKYLDLSFNGVIT----MSSN-FLGLEQLE 399 (570)
T ss_dssp ------------------------------------------------SCCCEEECCSCSEEE----EEEE-EETCTTCC
T ss_pred ------------------------------------------------CccCEEECCCCcccc----cccc-ccccCCCC
Confidence 444555554443111 1222 34455555
Q ss_pred EEeeecCCCcccchh-hhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCC-ccccCCC-CCCC
Q 038658 596 RLTIGWCPTLQSLVA-EEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSF-VSFPEVA-LPSK 672 (831)
Q Consensus 596 ~L~l~~c~~l~~l~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l-~~l~~~~-~~~~ 672 (831)
+|+++++ .+...+. ..+.. + ++|++|++++|...+..|..+..+++|++|++++|... ..+|... .+++
T Consensus 400 ~L~l~~n-~l~~~~~~~~~~~------l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 400 HLDFQHS-NLKQMSEFSVFLS------L-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EEECTTS-EEESCTTSCTTTT------C-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred EEEccCC-ccccccchhhhhc------C-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 5555553 2222211 11111 1 34566666666555555555555666666666665322 1333221 2556
Q ss_pred ccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC--CCCCCCceEEEecCC
Q 038658 673 VRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV--QLPPSLKNVVIRNCD 731 (831)
Q Consensus 673 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~c~ 731 (831)
|++|++++|...+..|..+.. +++|++|++++| .++.++.. ..+++|++|++++++
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNS--LSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTT--CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCccccCChhhhhc--ccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 666666665433333444444 566666666665 34444432 233566666666543
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=2.3e-31 Score=302.68 Aligned_cols=482 Identities=17% Similarity=0.126 Sum_probs=323.2
Q ss_pred cccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccC
Q 038658 183 SILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGN 260 (831)
Q Consensus 183 ~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~ 260 (831)
.+|..+. +.+++|++++|.++.+ +.+|..+++|++|++++|.++.+| ..++++++|++|++++|......|..|++
T Consensus 21 ~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 3454443 4799999999999988 568999999999999999999885 57899999999999998755545578999
Q ss_pred cccccccccCCCCCcccccC-CCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccc-cccccCCCCcceEEE
Q 038658 261 LIKLHHLNNSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLE-NAQLDGKKNLKVLML 338 (831)
Q Consensus 261 L~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~-~~~l~~~~~L~~L~l 338 (831)
+++|++|++++|. +..+|. .++++++|++|.. . ...+..+. ...+.++++|++|++
T Consensus 99 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L--------------------~-~n~l~~~~lp~~~~~l~~L~~L~l 156 (570)
T 2z63_A 99 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNV--------------------A-HNLIQSFKLPEYFSNLTNLEHLDL 156 (570)
T ss_dssp CTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEEC--------------------C-SSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred ccccccccccccc-cccCCCccccccccccEEec--------------------C-CCccceecChhhhcccCCCCEEeC
Confidence 9999999999998 666654 5889999998832 1 11222222 345778899999999
Q ss_pred EeecCCCCCChhhhhhHHhhhcCCCCCCCc----cEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCC-CCC-CCCC
Q 038658 339 RWTNSTDGSSLREAETQKGVLDMLKPHKNL----EQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCT-TLP-SVGQ 412 (831)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L----~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~-~~~-~l~~ 412 (831)
++|..... ....+..+.+| +.+++++|....++..... ..+|+.|++++|.... .++ .+..
T Consensus 157 ~~n~l~~~-----------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~ 223 (570)
T 2z63_A 157 SSNKIQSI-----------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQG 223 (570)
T ss_dssp TTSCCCEE-----------CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHT
T ss_pred cCCcccee-----------cHHHccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcC
Confidence 77655321 11223334455 6888888887766554433 3479999998874322 122 3445
Q ss_pred CCCcceEEeccc-----cCceeeCccccCCCCCCCCCCc-----ceeeccccccccccccCCCCCCCCCCCcccEEeEcC
Q 038658 413 LPSLKHLAVRRM-----SRVRRLGSEFYGNDTPIPFPCL-----ETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIG 482 (831)
Q Consensus 413 l~~L~~L~L~~~-----~~l~~~~~~~~~~~~~~~~~~L-----~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 482 (831)
++.++.+.+... ..+..+.. ..|..+ +.+.+.+...+. ...+..+..+++|++|++++
T Consensus 224 l~~l~~~~l~~~~~~~~~~l~~~~~--------~~~~~l~~l~l~~l~l~~~~~~~----~~~~~~~~~l~~L~~L~l~~ 291 (570)
T 2z63_A 224 LAGLEVHRLVLGEFRNEGNLEKFDK--------SALEGLCNLTIEEFRLAYLDYYL----DDIIDLFNCLTNVSSFSLVS 291 (570)
T ss_dssp TTTCEEEEEEEEECCCCSSCEECCT--------TTTGGGGGSEEEEEEEEETTEEE----SCSTTTTGGGTTCSEEEEES
T ss_pred ccccceeeeccccccCchhhhhcch--------hhhccccccchhhhhhhcchhhh----hhchhhhcCcCcccEEEecC
Confidence 555655544321 11111111 123333 333333322222 22233356788999999998
Q ss_pred CcCcccCCCC---CCCcccEEEEccccCccccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCC
Q 038658 483 CSKLKGTFPE---HLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPL 559 (831)
Q Consensus 483 c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (831)
| .++ .+|. .+ +|+.|++++|.........+++|+.|++++|.......
T Consensus 292 ~-~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~-------------------------- 342 (570)
T 2z63_A 292 V-TIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-------------------------- 342 (570)
T ss_dssp C-EEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC--------------------------
T ss_pred c-cch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc--------------------------
Confidence 5 565 5664 34 88999999887543333568899999999887432110
Q ss_pred CCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcc
Q 038658 560 KPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVK 639 (831)
Q Consensus 560 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 639 (831)
...+++|+.|+++++..... . .....+..+++|++|++++| .+..++.. +. .+ ++|++|++++|...+.
T Consensus 343 ~~~~~~L~~L~l~~n~l~~~-~-~~~~~~~~~~~L~~L~l~~n-~l~~~~~~-~~------~l-~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 343 EVDLPSLEFLDLSRNGLSFK-G-CCSQSDFGTTSLKYLDLSFN-GVITMSSN-FL------GL-EQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CCBCTTCCEEECCSSCCBEE-E-EEEHHHHTCSCCCEEECCSC-SEEEEEEE-EE------TC-TTCCEEECTTSEEESC
T ss_pred cccCCCCCEEeCcCCccCcc-c-cccccccccCccCEEECCCC-cccccccc-cc------cc-CCCCEEEccCCccccc
Confidence 14588999999988863221 0 00233567899999999985 55555432 21 12 5799999999886655
Q ss_pred cc-cccCCCCCCCeEEEecCCCCccccCCCC--CCCccEEEEecCCCC-cccccccccCCCCCcCeEEEccCCCccee-c
Q 038658 640 LP-QSLLSLSSLREIEIYNCSSFVSFPEVAL--PSKVRSISIHRCDAL-KSLPEAWMCDANLSLEILTISRCHSLTYI-A 714 (831)
Q Consensus 640 l~-~~l~~l~~L~~L~L~~~~~l~~l~~~~~--~~~L~~L~l~~c~~l-~~l~~~~~~~~l~~L~~L~l~~c~~l~~l-~ 714 (831)
.| ..+..+++|++|++++|. +...+...+ +++|++|++++|... ..+|..+.. +++|++|++++|. ++.+ |
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~--l~~L~~L~l~~n~-l~~~~~ 487 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--LRNLTFLDLSQCQ-LEQLSP 487 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--CTTCCEEECTTSC-CCEECT
T ss_pred cchhhhhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccccchhhhhc--ccCCCEEECCCCc-cccCCh
Confidence 44 467889999999999984 444333333 889999999998754 357777766 8999999999984 5555 3
Q ss_pred cC-CCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCCc
Q 038658 715 EV-QLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPSL 766 (831)
Q Consensus 715 ~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~l 766 (831)
.. ..+++|++|++++| +++.+. +..+.. +++ |++|++++|+-.
T Consensus 488 ~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~-----l~~--L~~L~l~~N~~~ 531 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASN-QLKSVP-DGIFDR-----LTS--LQKIWLHTNPWD 531 (570)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCC-TTTTTT-----CTT--CCEEECCSSCBC
T ss_pred hhhhcccCCCEEeCCCC-cCCCCC-HHHhhc-----ccC--CcEEEecCCccc
Confidence 32 44578999999886 666662 334554 777 999999987543
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=289.97 Aligned_cols=423 Identities=17% Similarity=0.163 Sum_probs=196.0
Q ss_pred cceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 192 QRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
++|++|++++|.++.++ ..|.++++|++|++++|+++.+ |..++++++|++|++++|. +..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEec
Confidence 45555555555555543 4455555555555555555544 4455555555555555543 3345544 5555555555
Q ss_pred CCCCCcc-cccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCC
Q 038658 270 SNTDSLE-EMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSS 348 (831)
Q Consensus 270 ~~~~~~~-~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~ 348 (831)
++|.+.+ .+|..+++++ +|++|++++|....
T Consensus 98 ~~N~l~~~~~p~~~~~l~---------------------------------------------~L~~L~L~~n~l~~--- 129 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMS---------------------------------------------QLKFLGLSTTHLEK--- 129 (520)
T ss_dssp CSSCCSSCCCCGGGGGCT---------------------------------------------TCCEEEEEESSCCG---
T ss_pred cCCccccccchhhhccCC---------------------------------------------cceEEEecCcccch---
Confidence 5555322 2344444444 44445554443311
Q ss_pred hhhhhhHHhhhcCCCCCCCc--cEEEEeeecC---CCCCccCCCCCCC-ceeEEEEecCCCCCCCC--CCCCCCCcceEE
Q 038658 349 LREAETQKGVLDMLKPHKNL--EQFFISGYGG---TKFPIWLGDSSFS-NLVTLKFEDCGMCTTLP--SVGQLPSLKHLA 420 (831)
Q Consensus 349 ~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~~~-~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~ 420 (831)
..+..+++| +.|++++|.. ...|.++.. +. +...+++.+|...+.++ .+..+++|+.|+
T Consensus 130 -----------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 196 (520)
T 2z7x_B 130 -----------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196 (520)
T ss_dssp -----------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECC
T ss_pred -----------hhccccccceeeEEEeecccccccccccccccc--cccceEEEEeccCcchhhhhhhhhhcccceeecc
Confidence 112223344 6666666654 233444432 22 23455666666665555 456677777777
Q ss_pred eccccC-------ceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCC
Q 038658 421 VRRMSR-------VRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEH 493 (831)
Q Consensus 421 L~~~~~-------l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~ 493 (831)
++++.. ...++ . ...+++|+.|.+.++.--........+ ....++|++|++++| ++++.+|..
T Consensus 197 l~~n~~~~~~~~~~~~~~-~------l~~l~~L~~L~l~~~~l~~~~~~~~~~--~~~~~~L~~L~l~~n-~l~~~~p~~ 266 (520)
T 2z7x_B 197 IKCVLEDNKCSYFLSILA-K------LQTNPKLSNLTLNNIETTWNSFIRILQ--LVWHTTVWYFSISNV-KLQGQLDFR 266 (520)
T ss_dssp EEECCSTTTTHHHHHHHH-G------GGGCTTCCEEEEEEEEEEHHHHHHHHH--HHHTSSCSEEEEEEE-EEESCCCCC
T ss_pred ccccccccccceeecchh-h------hccccchhhccccccccCHHHHHHHHH--HhhhCcccEEEeecc-cccCccccc
Confidence 776531 11110 1 122566666666553211110000000 001357777777774 555556543
Q ss_pred --------CCcccEEEEccccC-cc-ccCCC---CCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCC
Q 038658 494 --------LPALEMLVIGGCEE-LL-VSITS---LPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLK 560 (831)
Q Consensus 494 --------l~~L~~L~l~~~~~-l~-~~~~~---l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (831)
+++|+.+++++|.. ++ ..+.. -++|+.|++++|...... .+
T Consensus 267 ~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--------------------------~~ 320 (520)
T 2z7x_B 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--------------------------CP 320 (520)
T ss_dssp CCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--------------------------CC
T ss_pred hhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--------------------------ch
Confidence 34444445544442 00 00111 134666666665522100 11
Q ss_pred CCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCccc
Q 038658 561 PRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKL 640 (831)
Q Consensus 561 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l 640 (831)
..+++|++|+++++.... .....+..+++|++|+++++ .+..++.- ...+..+ ++|++|++++|...+.+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N-~l~~l~~~----~~~~~~l-~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTD----TVFENCGHLTELETLILQMN-QLKELSKI----AEMTTQM-KSLQQLDISQNSVSYDE 390 (520)
T ss_dssp SSCCCCCEEECCSSCCCT----TTTTTCCCCSSCCEEECCSS-CCCBHHHH----HHHHTTC-TTCCEEECCSSCCBCCG
T ss_pred hhCCcccEEEeECCccCh----hhhhhhccCCCCCEEEccCC-ccCccccc----hHHHhhC-CCCCEEECCCCcCCccc
Confidence 345666666666654222 11223355566666666653 34432210 0001111 35666666665544434
Q ss_pred ccc-cCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC--C
Q 038658 641 PQS-LLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV--Q 717 (831)
Q Consensus 641 ~~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~ 717 (831)
|.. +..+++|++|++++|...+.+|. .++++|++|++++|. ++.+|..+.. +++|++|++++| .++.+|.. .
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~L~~L~Ls~N~-l~~ip~~~~~--l~~L~~L~L~~N-~l~~l~~~~~~ 465 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNK-IKSIPKQVVK--LEALQELNVASN-QLKSVPDGIFD 465 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGG-SCCTTCCEEECCSSC-CCCCCGGGGG--CTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccchhccCccCCEEECcCCCCCcchhh-hhcccCCEEECCCCc-ccccchhhhc--CCCCCEEECCCC-cCCccCHHHhc
Confidence 432 44555666666666532233322 122455555555542 3455544443 555555555554 34444432 1
Q ss_pred CCCCCceEEEec
Q 038658 718 LPPSLKNVVIRN 729 (831)
Q Consensus 718 ~~~~L~~L~l~~ 729 (831)
.+++|++|++++
T Consensus 466 ~l~~L~~L~l~~ 477 (520)
T 2z7x_B 466 RLTSLQKIWLHT 477 (520)
T ss_dssp TCTTCCEEECCS
T ss_pred cCCcccEEECcC
Confidence 123444444444
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.4e-31 Score=306.01 Aligned_cols=355 Identities=13% Similarity=0.102 Sum_probs=194.1
Q ss_pred cCccccCCCCCceeecCCCCCCc------------------cchhhh--ccCCccEEeecCcCccccccccccCcccccc
Q 038658 207 LPDSIGDLRYLRYLNLSGTQIRT------------------LPESVN--KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHH 266 (831)
Q Consensus 207 lp~~~~~l~~Lr~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 266 (831)
+|.+|+++++|++|+|++|.++. +|+.++ ++++|++|+|++|...+.+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 66666667777777777776665 666665 6777777777766666666666777777777
Q ss_pred cccCCCC-Ccc-cccCCCCCcc-------ccccccceEecCCCCCcchhhhccccccCeeeEccccc-ccccCCCCcceE
Q 038658 267 LNNSNTD-SLE-EMPLGIGKLT-------CLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLEN-AQLDGKKNLKVL 336 (831)
Q Consensus 267 L~l~~~~-~~~-~~p~~~~~L~-------~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~-~~l~~~~~L~~L 336 (831)
|++++|. +.+ .+|.++++++ +|+.|... .+.+..+.. ..+..+++|+.|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls---------------------~N~L~~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG---------------------YNNLEEFPASASLQKMVKLGLL 578 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC---------------------SSCCCBCCCHHHHTTCTTCCEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEee---------------------CCcCCccCChhhhhcCCCCCEE
Confidence 7777665 343 4665555444 55555111 111111111 134555666666
Q ss_pred EEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCc-eeEEEEecCCCCCCCC-CCCCCC
Q 038658 337 MLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSN-LVTLKFEDCGMCTTLP-SVGQLP 414 (831)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~-L~~L~l~~~~~~~~~~-~l~~l~ 414 (831)
++++|.... .+ .+..+++|+.|++++|.+..+|.++.. +++ |+.|++++|.+. .+| .+..++
T Consensus 579 ~Ls~N~l~~------------lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~--l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 579 DCVHNKVRH------------LE-AFGTNVKLTDLKLDYNQIEEIPEDFCA--FTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp ECTTSCCCB------------CC-CCCTTSEESEEECCSSCCSCCCTTSCE--ECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred ECCCCCccc------------ch-hhcCCCcceEEECcCCccccchHHHhh--ccccCCEEECcCCCCC-cCchhhhccc
Confidence 665554421 12 456667777777777777777766654 666 777777777766 444 444443
Q ss_pred --CcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC
Q 038658 415 --SLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE 492 (831)
Q Consensus 415 --~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~ 492 (831)
+|+.|+++++.....++. +.... . ....++|+.|++++| .++ .+|.
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~-l~~~l--~---------------------------~~~~~~L~~L~Ls~N-~L~-~lp~ 690 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRN-ISCSM--D---------------------------DYKGINASTVTLSYN-EIQ-KFPT 690 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSS-CSSCT--T---------------------------TCCCCCEEEEECCSS-CCC-SCCH
T ss_pred cCCCCEEECcCCcCCCcccc-chhhh--c---------------------------cccCCCcCEEEccCC-cCC-ccCH
Confidence 377777776542211100 00000 0 002234555555552 343 4442
Q ss_pred ----CCCcccEEEEccccC--cccc--------CCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCC
Q 038658 493 ----HLPALEMLVIGGCEE--LLVS--------ITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGP 558 (831)
Q Consensus 493 ----~l~~L~~L~l~~~~~--l~~~--------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (831)
.+++|+.|++++|.. ++.. ...+++|+.|++++|.....+..
T Consensus 691 ~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~------------------------ 746 (876)
T 4ecn_A 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD------------------------ 746 (876)
T ss_dssp HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG------------------------
T ss_pred HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH------------------------
Confidence 345555555555541 1111 11233778888877763211100
Q ss_pred CC-CCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCC
Q 038658 559 LK-PRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGL 637 (831)
Q Consensus 559 ~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 637 (831)
+. ..+++|+.|+++++.-- . +|.. +..+++|+.|++++++ ++++|...
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~-~---lp~~-l~~L~~L~~L~Ls~N~--------------------------~ls~N~l~ 795 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFS-S---FPTQ-PLNSSQLKAFGIRHQR--------------------------DAEGNRIL 795 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCS-S---CCCG-GGGCTTCCEEECCCCB--------------------------CTTCCBCC
T ss_pred hhhccCCCcCEEEeCCCCCC-c---cchh-hhcCCCCCEEECCCCC--------------------------Cccccccc
Confidence 00 13445555555544311 1 1211 2234444444443321 12346667
Q ss_pred cccccccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCccc
Q 038658 638 VKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSL 687 (831)
Q Consensus 638 ~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l 687 (831)
+.+|..+..+++|+.|+|++| .++.+|.. +.++|+.|++++|+..+.-
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPNISID 843 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTTCEEE
T ss_pred ccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCCCCccC
Confidence 778888888999999999998 45888865 4578888888887754433
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=4.3e-31 Score=296.24 Aligned_cols=449 Identities=14% Similarity=0.100 Sum_probs=294.5
Q ss_pred eEEEEEccccCccccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcccc-CccccCCCCCc
Q 038658 140 RHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLR 218 (831)
Q Consensus 140 r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr 218 (831)
+++.+..+....+.. .+. ++++.|.+.+ +.+....+..+..+++|++|+|++|.++.+ |..|+++++|+
T Consensus 3 ~~l~ls~n~l~~ip~--~~~--~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPK--DLS--QKTTILNISQ------NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSCCSSCCC--SCC--TTCSEEECCS------SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred ceEecCCCCcccccc--ccc--ccccEEECCC------CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence 445555554443321 122 7889885543 445544456677999999999999999988 78999999999
Q ss_pred eeecCCCCCCccchhhhccCCccEEeecCcCccc-cccccccCcccccccccCCCCCcccccCCCCCccccccccceEec
Q 038658 219 YLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLR-KLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVG 297 (831)
Q Consensus 219 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~ 297 (831)
+|+|++|+++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|.+.+ ..++.+++|
T Consensus 73 ~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L--------- 138 (520)
T 2z7x_B 73 YLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHL--------- 138 (520)
T ss_dssp EEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTS---------
T ss_pred EEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccc---------
Confidence 999999999999987 89999999999987554 478899999999999999987332 223333333
Q ss_pred CCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecC--CCCCChhhhhhHHhhhcCCCCCC-CccEEEEe
Q 038658 298 KDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNS--TDGSSLREAETQKGVLDMLKPHK-NLEQFFIS 374 (831)
Q Consensus 298 ~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~ 374 (831)
+|+.|++++|.. ... .+..+..+. ....++++
T Consensus 139 ----------------------------------~L~~L~l~~n~l~~~~~-----------~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 139 ----------------------------------NISKVLLVLGETYGEKE-----------DPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp ----------------------------------CEEEEEEEECTTTTSSC-----------CTTTTTTCCEEEEEEECC
T ss_pred ----------------------------------eeeEEEeeccccccccc-----------ccccccccccceEEEEec
Confidence 124455554443 111 112222222 11123334
Q ss_pred eecCCC-CCccCCCCCCCceeEEEEecCC-------CCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCc
Q 038658 375 GYGGTK-FPIWLGDSSFSNLVTLKFEDCG-------MCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCL 446 (831)
Q Consensus 375 ~~~~~~-~p~~~~~~~~~~L~~L~l~~~~-------~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L 446 (831)
++.... ++.... ..+++|+.|++++|. +.+.++.++.+++|+.|++.++............ ....++|
T Consensus 174 ~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~---~~~~~~L 249 (520)
T 2z7x_B 174 TNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ---LVWHTTV 249 (520)
T ss_dssp SSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH---HHHTSSC
T ss_pred cCcchhhhhhhhh-hcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHH---HhhhCcc
Confidence 443221 222221 137788888888876 3344456677888888888765321111000000 0113578
Q ss_pred ceeeccccccccccccCCCCCCC-----CCCCcccEEeEcCCcCcccCCCC-C------CCcccEEEEccccCccccC-C
Q 038658 447 ETLRFENLLEWEDWIPHGSTQGV-----EGFPKLRELEVIGCSKLKGTFPE-H------LPALEMLVIGGCEELLVSI-T 513 (831)
Q Consensus 447 ~~L~l~~~~~l~~~~~~~~~~~~-----~~~~~L~~L~l~~c~~l~~~~p~-~------l~~L~~L~l~~~~~l~~~~-~ 513 (831)
+.|++.++.- . +..+..+ +.+++|+.++++++ .+ .+|. . -.+|+.|++++|......+ .
T Consensus 250 ~~L~l~~n~l-~----~~~p~~~~~~~~~~l~~L~~l~l~~n-~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 321 (520)
T 2z7x_B 250 WYFSISNVKL-Q----GQLDFRDFDYSGTSLKALSIHQVVSD-VF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321 (520)
T ss_dssp SEEEEEEEEE-E----SCCCCCCCCCCSCCCCEEEEEEEEEC-CC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred cEEEeecccc-c----CccccchhhcccccCceeEecccccc-ce--ecchhhhhcccccCceeEEEcCCCccccccchh
Confidence 8888877431 1 1122223 57888888888884 44 4552 1 1468999999988655443 6
Q ss_pred CCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCC
Q 038658 514 SLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISS 593 (831)
Q Consensus 514 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~ 593 (831)
.+++|++|++++|...... ......+++|+.|+++++.... +...+ ..+..+++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~------------------------~~~~~~l~~L~~L~L~~N~l~~-l~~~~-~~~~~l~~ 375 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTV------------------------FENCGHLTELETLILQMNQLKE-LSKIA-EMTTQMKS 375 (520)
T ss_dssp SCCCCCEEECCSSCCCTTT------------------------TTTCCCCSSCCEEECCSSCCCB-HHHHH-HHHTTCTT
T ss_pred hCCcccEEEeECCccChhh------------------------hhhhccCCCCCEEEccCCccCc-cccch-HHHhhCCC
Confidence 7889999999988743311 1123568889999999887432 11111 23578899
Q ss_pred ccEEeeecCCCccc-chhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCC-CC
Q 038658 594 LKRLTIGWCPTLQS-LVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVAL-PS 671 (831)
Q Consensus 594 L~~L~l~~c~~l~~-l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~-~~ 671 (831)
|++|+++++ .+.. ++...+.. .++|++|++++|...+.+|..+. ++|++|++++| .++.+|.... ++
T Consensus 376 L~~L~Ls~N-~l~~~l~~~~~~~-------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~ 444 (520)
T 2z7x_B 376 LQQLDISQN-SVSYDEKKGDCSW-------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLE 444 (520)
T ss_dssp CCEEECCSS-CCBCCGGGCSCCC-------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCT
T ss_pred CCEEECCCC-cCCcccccchhcc-------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCC
Confidence 999999985 5555 65432222 25799999999988777776654 79999999998 6778886444 89
Q ss_pred CccEEEEecCCCCcccccc-cccCCCCCcCeEEEccCCC
Q 038658 672 KVRSISIHRCDALKSLPEA-WMCDANLSLEILTISRCHS 709 (831)
Q Consensus 672 ~L~~L~l~~c~~l~~l~~~-~~~~~l~~L~~L~l~~c~~ 709 (831)
+|++|++++|. ++.+|.. +.. +++|++|++++|+-
T Consensus 445 ~L~~L~L~~N~-l~~l~~~~~~~--l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 445 ALQELNVASNQ-LKSVPDGIFDR--LTSLQKIWLHTNPW 480 (520)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTT--CTTCCEEECCSSCB
T ss_pred CCCEEECCCCc-CCccCHHHhcc--CCcccEEECcCCCC
Confidence 99999999974 6678876 555 89999999999763
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=5.8e-31 Score=300.28 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=69.2
Q ss_pred ccccccCCcceEEEEeCCCCccc------------------cCcccc--CCCCCceeecCCCCCC-ccchhhhccCCccE
Q 038658 184 ILPKLFKLQRLRVFSLCGYWISE------------------LPDSIG--DLRYLRYLNLSGTQIR-TLPESVNKLYNLHT 242 (831)
Q Consensus 184 ~~~~~~~l~~L~~L~L~~~~i~~------------------lp~~~~--~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~ 242 (831)
+|..+.++++|++|+|++|.++. +|..++ ++++|++|++++|.+. .+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 56656666667777777666665 666666 6677777777666654 56666666777777
Q ss_pred EeecCcC-ccc-cccccccCc------ccccccccCCCCCcccccC--CCCCccccccc
Q 038658 243 LSLEGCR-GLR-KLCAGMGNL------IKLHHLNNSNTDSLEEMPL--GIGKLTCLQTL 291 (831)
Q Consensus 243 L~l~~~~-~~~-~lp~~i~~L------~~L~~L~l~~~~~~~~~p~--~~~~L~~L~~L 291 (831)
|++++|. ... .+|..++++ ++|++|++++|. +..+|. .++++++|++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L 335 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGML 335 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEE
Confidence 7776665 333 466666665 667777776666 336666 56666666665
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=3.8e-29 Score=282.57 Aligned_cols=411 Identities=18% Similarity=0.119 Sum_probs=199.1
Q ss_pred cceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 192 QRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
++|++|++++|.++.+| .+|+++++|++|+|++|.++.+ |..++++++|++|++++|. +..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEEC
Confidence 45666666666666553 4556666666666666666655 4455666666666666654 4455554 5666666666
Q ss_pred CCCCCcccc--cCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCC
Q 038658 270 SNTDSLEEM--PLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGS 347 (831)
Q Consensus 270 ~~~~~~~~~--p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~ 347 (831)
++|. +..+ |..++++++| +.|+++.|.....
T Consensus 129 s~N~-l~~l~~p~~~~~l~~L---------------------------------------------~~L~L~~n~l~~~- 161 (562)
T 3a79_B 129 SFND-FDVLPVCKEFGNLTKL---------------------------------------------TFLGLSAAKFRQL- 161 (562)
T ss_dssp CSSC-CSBCCCCGGGGGCTTC---------------------------------------------CEEEEECSBCCTT-
T ss_pred CCCC-ccccCchHhhcccCcc---------------------------------------------cEEecCCCccccC-
Confidence 6665 3222 2344444444 4444544433211
Q ss_pred ChhhhhhHHhhhcCCCCCCCccEEEEeeecC--C-CCCccCCCCCCCceeEEEEecCCCCCCCC--CCCCCCCcceEEec
Q 038658 348 SLREAETQKGVLDMLKPHKNLEQFFISGYGG--T-KFPIWLGDSSFSNLVTLKFEDCGMCTTLP--SVGQLPSLKHLAVR 422 (831)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~-~~p~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~L~ 422 (831)
.+..+..+ +|+.|++++|.. . ..|.++..... ..-.+++++|.+...++ .+..+++|+.++++
T Consensus 162 ----------~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 229 (562)
T 3a79_B 162 ----------DLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229 (562)
T ss_dssp ----------TTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEE
T ss_pred ----------chhhhhhc-eeeEEEeecccccccccCcccccccCc-ceEEEEecCccchhhhhhhcccccceEEEeccc
Confidence 11111122 336666666654 2 22333322111 12244666666655554 35567777777777
Q ss_pred ccc----CceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCC----
Q 038658 423 RMS----RVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHL---- 494 (831)
Q Consensus 423 ~~~----~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l---- 494 (831)
++. .+......+ ...++|+.|.+.++.--...... .+. ....++|++|++++| .+++.+|..+
T Consensus 230 ~n~~~~~~l~~~~~~l------~~l~~L~~L~L~~~~l~~~~~~~-~~~-~~~~~~L~~L~l~~n-~l~~~ip~~~~~~~ 300 (562)
T 3a79_B 230 LNDENCQRLMTFLSEL------TRGPTLLNVTLQHIETTWKCSVK-LFQ-FFWPRPVEYLNIYNL-TITERIDREEFTYS 300 (562)
T ss_dssp CCSTTHHHHHHHHHHH------HSCSSCEEEEEEEEEECHHHHHH-HHH-HHTTSSEEEEEEEEE-EECSCCCCCCCCCC
T ss_pred ccccccchHHHHHHHH------hccCcceEEEecCCcCcHHHHHH-HHH-hhhcccccEEEEecc-Eeeccccchhhhcc
Confidence 642 111111111 12566666666654211110000 000 012358899999885 5666777655
Q ss_pred -CcccEEEEccccCccccCC--------CCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCC
Q 038658 495 -PALEMLVIGGCEELLVSIT--------SLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPK 565 (831)
Q Consensus 495 -~~L~~L~l~~~~~l~~~~~--------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 565 (831)
++|+.|.+.++..-...++ ..++|+.|++++|...... .+..+++
T Consensus 301 ~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--------------------------~~~~l~~ 354 (562)
T 3a79_B 301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--------------------------CPPSPSS 354 (562)
T ss_dssp SCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--------------------------CCSSCCC
T ss_pred cccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--------------------------CccCCCC
Confidence 6666666555442111111 1245777777776532210 1134666
Q ss_pred CcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCccccc-cc
Q 038658 566 LEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQ-SL 644 (831)
Q Consensus 566 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~-~l 644 (831)
|++|+++++.-.. .....+..+++|++|+++++ .++.++... ..+..+ ++|++|++++|...+.+|. .+
T Consensus 355 L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~----~~~~~l-~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 355 FTFLNFTQNVFTD----SVFQGCSTLKRLQTLILQRN-GLKNFFKVA----LMTKNM-SSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp CCEEECCSSCCCT----TTTTTCCSCSSCCEEECCSS-CCCBTTHHH----HTTTTC-TTCCEEECTTSCCBSCCSSCCC
T ss_pred ceEEECCCCcccc----chhhhhcccCCCCEEECCCC-CcCCcccch----hhhcCC-CCCCEEECCCCcCCCccChhhh
Confidence 7777776665222 12233455666666666663 444432110 000111 3566666666554443443 24
Q ss_pred CCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceec
Q 038658 645 LSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIA 714 (831)
Q Consensus 645 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~ 714 (831)
..+++|++|++++|.....+|. .++++|++|++++| .++.+|..+.. +++|++|++++| .++.+|
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~-~l~~~L~~L~L~~N-~l~~ip~~~~~--l~~L~~L~L~~N-~l~~l~ 489 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFR-CLPPKVKVLDLHNN-RIMSIPKDVTH--LQALQELNVASN-QLKSVP 489 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGS-SCCTTCSEEECCSS-CCCCCCTTTTS--SCCCSEEECCSS-CCCCCC
T ss_pred cCcccCCEEECCCCCCCcchhh-hhcCcCCEEECCCC-cCcccChhhcC--CCCCCEEECCCC-CCCCCC
Confidence 4555666666666532222222 11245555555554 34455544433 555555555553 344444
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=6.2e-29 Score=287.05 Aligned_cols=482 Identities=18% Similarity=0.096 Sum_probs=266.6
Q ss_pred ceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccc-cccCccccccccc
Q 038658 193 RLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLNN 269 (831)
Q Consensus 193 ~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l 269 (831)
.+++|||++|.|+.+| .+|.++++||+|+|++|+|+.+|+ +|.+|++|++|+|++|. +..+|. .|++|++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEEC
Confidence 5677777777777774 567777777777777777777754 56777777777777765 445543 4677777777777
Q ss_pred CCCCCcccccC-CCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccc-cccccCCCCcceEEEEeecCCCCC
Q 038658 270 SNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLE-NAQLDGKKNLKVLMLRWTNSTDGS 347 (831)
Q Consensus 270 ~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~-~~~l~~~~~L~~L~l~~~~~~~~~ 347 (831)
++|. +..+|. .|+++++|++|..... .+..+. ...+..+++|+.|++++|......
T Consensus 132 s~N~-l~~l~~~~~~~L~~L~~L~Ls~N---------------------~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 132 VETN-LASLENFPIGHLKTLKELNVAHN---------------------LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSS---------------------CCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCc-CCCCChhhhhcCcccCeeccccC---------------------ccccCCCchhhccchhhhhhcccCccccccc
Confidence 7776 444554 3777777777732111 111111 122334445555555544432210
Q ss_pred ChhhhhhHHhhhcCCCCC-CCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCC---------------------
Q 038658 348 SLREAETQKGVLDMLKPH-KNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCT--------------------- 405 (831)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~--------------------- 405 (831)
.. .+..+... .....++++.+....++..... ...+..+++.++....
T Consensus 190 ~~--------~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~--~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~ 259 (635)
T 4g8a_A 190 CT--------DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 259 (635)
T ss_dssp GG--------GGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEE
T ss_pred cc--------cccchhhhhhhhhhhhcccCcccccCccccc--chhhhhhhhhcccccccccchhhcCCccccccccccc
Confidence 00 00000000 1122333444443333322221 2233344443332211
Q ss_pred ------CCC-----CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCc
Q 038658 406 ------TLP-----SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPK 474 (831)
Q Consensus 406 ------~~~-----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 474 (831)
.+. .+..+..+....+............ . .....+.+++.+.+.+..... .. .+..+..
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-~--~~~~~~~~l~~l~~~~~~~~~-~~------~~~~~~~ 329 (635)
T 4g8a_A 260 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGI-I--DLFNCLTNVSSFSLVSVTIER-VK------DFSYNFG 329 (635)
T ss_dssp CCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEEC-T--TTTGGGTTCSEEEEESCEEEE-CG------GGGSCCC
T ss_pred ccccccccccccccccccccchhhhhhhhhhhcccccch-h--hhhhhhccccccccccccccc-cc------ccccchh
Confidence 111 1222233333333221100000000 0 001224455666555432211 10 1334677
Q ss_pred ccEEeEcCCcCcccCCCCCCCcccEEEEccccCc-cccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchh
Q 038658 475 LRELEVIGCSKLKGTFPEHLPALEMLVIGGCEEL-LVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQV 553 (831)
Q Consensus 475 L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (831)
|+.|++.+| .+....+..++.|+.+.+..+... ......+++|+.++++.|.........
T Consensus 330 L~~L~l~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~------------------ 390 (635)
T 4g8a_A 330 WQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS------------------ 390 (635)
T ss_dssp CSEEEEESC-EESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECC------------------
T ss_pred hhhhhcccc-cccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccc------------------
Confidence 888888885 454344457788888888877632 223445788999999887743321110
Q ss_pred hccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEecc
Q 038658 554 LLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLND 633 (831)
Q Consensus 554 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~ 633 (831)
.......+|+.+++..+.... .+ ..+..+++|+.+++..++.....+...+... .+++.++++.
T Consensus 391 ----~~~~~~~~L~~L~~~~~~~~~----~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l-------~~l~~l~ls~ 454 (635)
T 4g8a_A 391 ----QSDFGTISLKYLDLSFNGVIT----MS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-------RNLIYLDISH 454 (635)
T ss_dssp ----HHHHSCSCCCEEECCSCSEEE----EC-SCCTTCTTCCEEECTTSEEESTTSSCTTTTC-------TTCCEEECTT
T ss_pred ----cchhhhhhhhhhhcccccccc----cc-ccccccccccchhhhhccccccccccccccc-------cccccccccc
Confidence 011235677788777665322 22 2346778888888877544433332222222 4788888888
Q ss_pred CCCCcccccccCCCCCCCeEEEecCCCCccccCCCC--CCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcc
Q 038658 634 CKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVAL--PSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLT 711 (831)
Q Consensus 634 ~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~ 711 (831)
|......+..+..+++|+.|++++|.....+....+ +++|++|++++|..-+..|..+.. +++|++|++++| +++
T Consensus 455 n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~--l~~L~~L~Ls~N-~l~ 531 (635)
T 4g8a_A 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS--LSSLQVLNMSHN-NFF 531 (635)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTS-CCC
T ss_pred cccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC--CCCCCEEECCCC-cCC
Confidence 887776777778888888888888865555443333 788888888887544444555655 888888888886 566
Q ss_pred eeccC--CCCCCCceEEEecCCCCCccccccCccCCccccc-CccccceEEEecCC
Q 038658 712 YIAEV--QLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRY-TSSLLEHLHIESCP 764 (831)
Q Consensus 712 ~l~~~--~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l-~~~~L~~L~i~~c~ 764 (831)
.++.. ..+++|++|+++++ +++.+. +..+.. + ++ |++|++++++
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~l~~-----l~~~--L~~L~L~~Np 578 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLN-HIMTSK-KQELQH-----FPSS--LAFLNLTQND 578 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTS-CCCBCC-SSCTTC-----CCTT--CCEEECTTCC
T ss_pred CCChhHHhCCCCCCEEECCCC-cCCCCC-HHHHHh-----hhCc--CCEEEeeCCC
Confidence 66654 34578888888874 566553 444444 4 46 8888888754
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2.2e-28 Score=266.19 Aligned_cols=266 Identities=18% Similarity=0.124 Sum_probs=151.2
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCC-ccchhhhccCCc-------------cEEeecCcCcccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIR-TLPESVNKLYNL-------------HTLSLEGCRGLRKLC 255 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~l~~~~~~~~lp 255 (831)
+...|++|++++|.+..+|.+|+++++|++|++++|.+. .+|.+++++++| ++|++++|. +..+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCC
Confidence 457788888888888888888888888888888888876 778888887765 888888765 55566
Q ss_pred ccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcce
Q 038658 256 AGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKV 335 (831)
Q Consensus 256 ~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~ 335 (831)
.. .++|++|++++|. +..+|..+ ++|++|... .+.+..+.. ..++|++
T Consensus 88 ~~---~~~L~~L~l~~n~-l~~lp~~~---~~L~~L~l~---------------------~n~l~~l~~----~~~~L~~ 135 (454)
T 1jl5_A 88 EL---PPHLESLVASCNS-LTELPELP---QSLKSLLVD---------------------NNNLKALSD----LPPLLEY 135 (454)
T ss_dssp SC---CTTCSEEECCSSC-CSSCCCCC---TTCCEEECC---------------------SSCCSCCCS----CCTTCCE
T ss_pred CC---cCCCCEEEccCCc-CCcccccc---CCCcEEECC---------------------CCccCcccC----CCCCCCE
Confidence 52 3678888888887 44466543 455555211 001111110 0157778
Q ss_pred EEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCC
Q 038658 336 LMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPS 415 (831)
Q Consensus 336 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 415 (831)
|++++|.... .+ .+..+++|+.|++++|.+..+|.+ ..+|++|++++|.+.+ +|.++.+++
T Consensus 136 L~L~~n~l~~------------lp-~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~-l~~~~~l~~ 196 (454)
T 1jl5_A 136 LGVSNNQLEK------------LP-ELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEE-LPELQNLPF 196 (454)
T ss_dssp EECCSSCCSS------------CC-CCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSS-CCCCTTCTT
T ss_pred EECcCCCCCC------------Cc-ccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCc-CccccCCCC
Confidence 8887665432 11 467778888888888888777754 3588888998887765 667888888
Q ss_pred cceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCCC
Q 038658 416 LKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLP 495 (831)
Q Consensus 416 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~ 495 (831)
|+.|+++++. +..++ ...++|+.|++.++. +.. .+ .++.+++|++|++++ ++++ .+|..++
T Consensus 197 L~~L~l~~N~-l~~l~---------~~~~~L~~L~l~~n~-l~~-----lp-~~~~l~~L~~L~l~~-N~l~-~l~~~~~ 257 (454)
T 1jl5_A 197 LTAIYADNNS-LKKLP---------DLPLSLESIVAGNNI-LEE-----LP-ELQNLPFLTTIYADN-NLLK-TLPDLPP 257 (454)
T ss_dssp CCEEECCSSC-CSSCC---------CCCTTCCEEECCSSC-CSS-----CC-CCTTCTTCCEEECCS-SCCS-SCCSCCT
T ss_pred CCEEECCCCc-CCcCC---------CCcCcccEEECcCCc-CCc-----cc-ccCCCCCCCEEECCC-CcCC-ccccccc
Confidence 8888888764 22221 123577777777642 221 11 155677788888877 4665 5666666
Q ss_pred cccEEEEccccCccccCCCCCccceEEEcCCC
Q 038658 496 ALEMLVIGGCEELLVSITSLPALSKLEIGGCK 527 (831)
Q Consensus 496 ~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~ 527 (831)
+|+.|++++|.... .-..+++|+.|++++|.
T Consensus 258 ~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 258 SLEALNVRDNYLTD-LPELPQSLTFLDVSENI 288 (454)
T ss_dssp TCCEEECCSSCCSC-CCCCCTTCCEEECCSSC
T ss_pred ccCEEECCCCcccc-cCcccCcCCEEECcCCc
Confidence 66666666665221 11123556666666554
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=8.5e-28 Score=277.53 Aligned_cols=493 Identities=18% Similarity=0.151 Sum_probs=288.4
Q ss_pred cceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccch-hhhccCCc
Q 038658 163 HLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNL 240 (831)
Q Consensus 163 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L 240 (831)
.++.|.+ ++|.+..-.+..|.++++|++|+|++|.|+.+| .+|+++++|++|+|++|+|+.+|. .|.++++|
T Consensus 53 ~~~~LdL------s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 53 STKNLDL------SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TCCEEEC------TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCEEEe------eCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 4566633 334443322334457777777777777777774 457777777777777777777764 46777777
Q ss_pred cEEeecCcCccccccc-cccCcccccccccCCCCCcc-cccCCCCCccccccccceEec--CCCCCcchhhhccccccCe
Q 038658 241 HTLSLEGCRGLRKLCA-GMGNLIKLHHLNNSNTDSLE-EMPLGIGKLTCLQTLCNFVVG--KDSGSRLRELKLLTHLRGT 316 (831)
Q Consensus 241 ~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~~~~L~~L~~L~~~~~~--~~~~~~~~~l~~L~~L~~~ 316 (831)
++|++++|. +..+|. .|+++++|++|++++|.+.. .+|..++.+++|++|...... ......+..+..+..+...
T Consensus 127 ~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 127 QKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp CEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred CEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence 777777765 444443 47777777777777776332 345567777777777322111 1111222233322221111
Q ss_pred e-----eEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCC---CCccCC--
Q 038658 317 L-----TISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTK---FPIWLG-- 386 (831)
Q Consensus 317 l-----~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~p~~~~-- 386 (831)
. .+..+....+ ....++.+++..+... . .. ....+..+..++...+....... +.....
T Consensus 206 ~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~----~---~~---~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDS----L---NV---MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp EECTTCCCCEECTTTT-TTCEEEEEEEESCCSS----H---HH---HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred hhcccCcccccCcccc-cchhhhhhhhhccccc----c---cc---cchhhcCCcccccccccccccccccccccccccc
Confidence 1 1111111111 2233455555443221 0 00 11122334455555554332211 111000
Q ss_pred CCCCCceeEEEEecCCCCC----CCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeecccccccccccc
Q 038658 387 DSSFSNLVTLKFEDCGMCT----TLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIP 462 (831)
Q Consensus 387 ~~~~~~L~~L~l~~~~~~~----~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 462 (831)
-.....+....+..+.... ....+..+.+++.+.+.++.... +.. ......|+.|.+.++..- ...
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~-------~~~~~~L~~L~l~~~~~~-~~~- 344 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-VKD-------FSYNFGWQHLELVNCKFG-QFP- 344 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-CGG-------GGSCCCCSEEEEESCEES-SCC-
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-ccc-------cccchhhhhhhccccccc-CcC-
Confidence 0113445555554443321 12245556777787776653222 111 122567788887764321 111
Q ss_pred CCCCCCCCCCCcccEEeEcCCcCcccCCC-CCCCcccEEEEccccCcc-----ccCCCCCccceEEEcCCCCcccccccc
Q 038658 463 HGSTQGVEGFPKLRELEVIGCSKLKGTFP-EHLPALEMLVIGGCEELL-----VSITSLPALSKLEIGGCKKVVWRSETD 536 (831)
Q Consensus 463 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~L~l~~~~~l~-----~~~~~l~~L~~L~l~~~~~~~~~~~~~ 536 (831)
...++.|+.+.+.++ .....++ ..+++|+.+++++|.... .....+.+|+.+++..+......
T Consensus 345 ------~~~l~~L~~l~l~~n-~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~---- 413 (635)
T 4g8a_A 345 ------TLKLKSLKRLTFTSN-KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS---- 413 (635)
T ss_dssp ------CCBCTTCCEEEEESC-CSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC----
T ss_pred ------cccchhhhhcccccc-cCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc----
Confidence 235678888888874 3332222 267889999998877422 23345778899988887643311
Q ss_pred ccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhH
Q 038658 537 HLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQ 616 (831)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 616 (831)
.....+++|+.+++..+..... .+...+..+++++.++++.+ .+.......+..
T Consensus 414 ---------------------~~~~~l~~L~~l~l~~~~~~~~---~~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~- 467 (635)
T 4g8a_A 414 ---------------------SNFLGLEQLEHLDFQHSNLKQM---SEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNG- 467 (635)
T ss_dssp ---------------------SCCTTCTTCCEEECTTSEEEST---TSSCTTTTCTTCCEEECTTS-CCEECCTTTTTT-
T ss_pred ---------------------ccccccccccchhhhhcccccc---cccccccccccccccccccc-cccccccccccc-
Confidence 1234578888888887765443 44555678889999999874 555554333222
Q ss_pred hhhhcccCCccEEEeccCCCCcc-cccccCCCCCCCeEEEecCCCCccccCCCC--CCCccEEEEecCCCCcccc-cccc
Q 038658 617 QQLCELSCRLEYLLLNDCKGLVK-LPQSLLSLSSLREIEIYNCSSFVSFPEVAL--PSKVRSISIHRCDALKSLP-EAWM 692 (831)
Q Consensus 617 ~~l~~~~~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~-~~~~ 692 (831)
.++|++|++++|..... .|..+..+++|++|+|++| .++.++...+ +++|++|++++|. ++.++ ..+.
T Consensus 468 ------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~ 539 (635)
T 4g8a_A 468 ------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYK 539 (635)
T ss_dssp ------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGT
T ss_pred ------chhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHh
Confidence 25799999999875553 5778889999999999998 6777765544 8999999999975 55554 4555
Q ss_pred cCCCCCcCeEEEccCCCcceeccC---CCCCCCceEEEecCC
Q 038658 693 CDANLSLEILTISRCHSLTYIAEV---QLPPSLKNVVIRNCD 731 (831)
Q Consensus 693 ~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~c~ 731 (831)
. +++|++|++++| .++.++.. .++++|++|++++++
T Consensus 540 ~--l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 540 C--LNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp T--CTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred C--CCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 5 899999999997 56666544 345789999998754
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=9.4e-28 Score=271.16 Aligned_cols=450 Identities=16% Similarity=0.138 Sum_probs=254.8
Q ss_pred eEEEEEccccCccccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcccc-CccccCCCCCc
Q 038658 140 RHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLR 218 (831)
Q Consensus 140 r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr 218 (831)
+++.+..+....+.. .+ .++++.|.+.+ |.+....+..+.++++|++|+|++|.++.+ |..|+.+++|+
T Consensus 34 ~~l~ls~~~L~~ip~--~~--~~~L~~L~Ls~------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 34 SMVDYSNRNLTHVPK--DL--PPRTKALSLSQ------NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp CEEECTTSCCCSCCT--TS--CTTCCEEECCS------SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred cEEEcCCCCCccCCC--CC--CCCcCEEECCC------CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 556655554443321 12 27888885543 445444445667999999999999999988 78899999999
Q ss_pred eeecCCCCCCccchhhhccCCccEEeecCcCccc-cccccccCcccccccccCCCCCcccccCCCCCcccc--ccccceE
Q 038658 219 YLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLR-KLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCL--QTLCNFV 295 (831)
Q Consensus 219 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L--~~L~~~~ 295 (831)
+|+|++|.++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|.+.. ..++.+++| ++|....
T Consensus 104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 104 YLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEE
T ss_pred EEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeec
Confidence 999999999999987 89999999999987443 245789999999999999998433 245566666 7664332
Q ss_pred ecCC-CCCcchhhhccc--cccCeee----EcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCc
Q 038658 296 VGKD-SGSRLRELKLLT--HLRGTLT----ISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNL 368 (831)
Q Consensus 296 ~~~~-~~~~~~~l~~L~--~L~~~l~----i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 368 (831)
.... .......+..+. .+.-.+. ...+....+..+++|+.+++++|... ..........+...++|
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~-------~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN-------CQRLMTFLSELTRGPTL 251 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT-------HHHHHHHHHHHHSCSSC
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccc-------cchHHHHHHHHhccCcc
Confidence 2110 122222233222 1110000 01122234556778888888776421 11112233345566788
Q ss_pred cEEEEeeecCC-----CCCccCCCCCCCceeEEEEecCCCCCCCC-CC-----CCCCCcceEEeccccCceeeCccccCC
Q 038658 369 EQFFISGYGGT-----KFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SV-----GQLPSLKHLAVRRMSRVRRLGSEFYGN 437 (831)
Q Consensus 369 ~~L~l~~~~~~-----~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l-----~~l~~L~~L~L~~~~~l~~~~~~~~~~ 437 (831)
+.+++.++... .++.+.. .++|++|++++|.+.+.+| .+ ..++.|+.+++..+.. .++.....
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~- 325 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALY- 325 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHH-
T ss_pred eEEEecCCcCcHHHHHHHHHhhh---cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhh-
Confidence 88888776543 2233332 3588999999888876666 33 3344444443333211 11000000
Q ss_pred CCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCCCcccEEEEccccC---ccccCCC
Q 038658 438 DTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEE---LLVSITS 514 (831)
Q Consensus 438 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~---l~~~~~~ 514 (831)
. ....++|++|++++|.-....++..+++|+.|++++|.. .+..+..
T Consensus 326 ---------------------~---------~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 375 (562)
T 3a79_B 326 ---------------------S---------VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST 375 (562)
T ss_dssp ---------------------H---------HHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCS
T ss_pred ---------------------h---------hhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcc
Confidence 0 001134555666554221111224455555555555542 1234556
Q ss_pred CCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCc
Q 038658 515 LPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSL 594 (831)
Q Consensus 515 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L 594 (831)
+++|+.|++++|........ +.....+++|+.|+++++..... .+...+..+++|
T Consensus 376 l~~L~~L~L~~N~l~~~~~~----------------------~~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~~l~~L 430 (562)
T 3a79_B 376 LKRLQTLILQRNGLKNFFKV----------------------ALMTKNMSSLETLDVSLNSLNSH---AYDRTCAWAESI 430 (562)
T ss_dssp CSSCCEEECCSSCCCBTTHH----------------------HHTTTTCTTCCEEECTTSCCBSC---CSSCCCCCCTTC
T ss_pred cCCCCEEECCCCCcCCcccc----------------------hhhhcCCCCCCEEECCCCcCCCc---cChhhhcCcccC
Confidence 67777777777653321110 00123466777777776663221 344445666777
Q ss_pred cEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCC--CCC
Q 038658 595 KRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVAL--PSK 672 (831)
Q Consensus 595 ~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~--~~~ 672 (831)
++|+++++ .+..... ..++++|++|++++|. ++.+|..+..+++|++|++++| .++.+|...+ +++
T Consensus 431 ~~L~l~~n-~l~~~~~---------~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 431 LVLNLSSN-MLTGSVF---------RCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTS 498 (562)
T ss_dssp CEEECCSS-CCCGGGG---------SSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTT
T ss_pred CEEECCCC-CCCcchh---------hhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCC
Confidence 77777664 3321110 1222467777777765 3456666666777777777776 4556665322 566
Q ss_pred ccEEEEecCCCC
Q 038658 673 VRSISIHRCDAL 684 (831)
Q Consensus 673 L~~L~l~~c~~l 684 (831)
|+.|++++|+..
T Consensus 499 L~~L~l~~N~~~ 510 (562)
T 3a79_B 499 LQYIWLHDNPWD 510 (562)
T ss_dssp CCCEECCSCCBC
T ss_pred CCEEEecCCCcC
Confidence 666666665543
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.8e-27 Score=258.85 Aligned_cols=430 Identities=19% Similarity=0.202 Sum_probs=216.5
Q ss_pred CccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccc
Q 038658 208 PDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTC 287 (831)
Q Consensus 208 p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~ 287 (831)
|+.+ +.++||+|++++|.+..+|++++++++|++|++++|...+.+|..++++++|+.+++.+|.. .+
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~ 72 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQ 72 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HT
T ss_pred cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cC
Confidence 4444 46889999999999999999999999999999999887778999999998874444444320 11
Q ss_pred cccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCC
Q 038658 288 LQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKN 367 (831)
Q Consensus 288 L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (831)
+++|+. . ...+..+.. -.++|+.|++++|..... +. .+++
T Consensus 73 l~~L~l---~------------------~~~l~~lp~----~~~~L~~L~l~~n~l~~l------------p~---~~~~ 112 (454)
T 1jl5_A 73 AHELEL---N------------------NLGLSSLPE----LPPHLESLVASCNSLTEL------------PE---LPQS 112 (454)
T ss_dssp CSEEEC---T------------------TSCCSCCCS----CCTTCSEEECCSSCCSSC------------CC---CCTT
T ss_pred CCEEEe---c------------------CCccccCCC----CcCCCCEEEccCCcCCcc------------cc---ccCC
Confidence 222200 0 000000000 013556666655544221 11 1367
Q ss_pred ccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcc
Q 038658 368 LEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLE 447 (831)
Q Consensus 368 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~ 447 (831)
|+.|++++|....+|.. .++|++|++++|.+.+ +|.++.+++|++|+++++. +..++ ..+++|+
T Consensus 113 L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~-l~~lp---------~~~~~L~ 176 (454)
T 1jl5_A 113 LKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNS-LKKLP---------DLPPSLE 176 (454)
T ss_dssp CCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC-CSCCC---------CCCTTCC
T ss_pred CcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCc-CcccC---------CCccccc
Confidence 88888888877766643 2678888888887765 6678888888888888763 33322 1245888
Q ss_pred eeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCCCcccEEEEcccc--CccccCCCCCccceEEEcC
Q 038658 448 TLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCE--ELLVSITSLPALSKLEIGG 525 (831)
Q Consensus 448 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~--~l~~~~~~l~~L~~L~l~~ 525 (831)
.|++.+.. +.. .+ .++.+++|++|++++| .++ .+|...++|+.|++++|. .++ .+..+++|++|++++
T Consensus 177 ~L~L~~n~-l~~-----l~-~~~~l~~L~~L~l~~N-~l~-~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 177 FIAAGNNQ-LEE-----LP-ELQNLPFLTAIYADNN-SLK-KLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADN 246 (454)
T ss_dssp EEECCSSC-CSS-----CC-CCTTCTTCCEEECCSS-CCS-SCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred EEECcCCc-CCc-----Cc-cccCCCCCCEEECCCC-cCC-cCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCC
Confidence 88887742 222 11 2668899999999984 676 577777889999998886 233 366788888898888
Q ss_pred CCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCc
Q 038658 526 CKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTL 605 (831)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l 605 (831)
|.... ++..+++|+.|+++++.- +. .+. .+++|++|+++++ .+
T Consensus 247 N~l~~----------------------------l~~~~~~L~~L~l~~N~l-~~---l~~----~~~~L~~L~ls~N-~l 289 (454)
T 1jl5_A 247 NLLKT----------------------------LPDLPPSLEALNVRDNYL-TD---LPE----LPQSLTFLDVSEN-IF 289 (454)
T ss_dssp SCCSS----------------------------CCSCCTTCCEEECCSSCC-SC---CCC----CCTTCCEEECCSS-CC
T ss_pred CcCCc----------------------------ccccccccCEEECCCCcc-cc---cCc----ccCcCCEEECcCC-cc
Confidence 76322 122357788888887762 21 221 2467788888774 45
Q ss_pred ccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCc
Q 038658 606 QSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALK 685 (831)
Q Consensus 606 ~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~ 685 (831)
..++ ..|++|++|++++|...+ ++.. .++|++|++++| .++.+|.. +++|++|++++|. ++
T Consensus 290 ~~l~-----------~~~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N~-l~ 350 (454)
T 1jl5_A 290 SGLS-----------ELPPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNN-KLIELPAL--PPRLERLIASFNH-LA 350 (454)
T ss_dssp SEES-----------CCCTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CS
T ss_pred Cccc-----------CcCCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCC-cccccccc--CCcCCEEECCCCc-cc
Confidence 4432 233578888888776433 3311 247788888877 45556542 5777777777753 55
Q ss_pred ccccccccCCCCCcCeEEEccCCCcceeccCCCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCCC
Q 038658 686 SLPEAWMCDANLSLEILTISRCHSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCPS 765 (831)
Q Consensus 686 ~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~~ 765 (831)
.+|. . +++|++|++++| .++.+| ..|.++..|.. +.....+ |.. +++ |++|++++++-
T Consensus 351 ~lp~---~--l~~L~~L~L~~N-~l~~l~--~ip~~l~~L~~--n~~~~~i--~~~--------~~~--L~~L~ls~N~l 408 (454)
T 1jl5_A 351 EVPE---L--PQNLKQLHVEYN-PLREFP--DIPESVEDLRM--NSHLAEV--PEL--------PQN--LKQLHVETNPL 408 (454)
T ss_dssp CCCC---C--CTTCCEEECCSS-CCSSCC--CCCTTCCEEEC--CC----------------------------------
T ss_pred cccc---h--hhhccEEECCCC-CCCcCC--CChHHHHhhhh--ccccccc--ccc--------cCc--CCEEECCCCcC
Confidence 6665 2 677777777775 344433 23445555542 2222333 221 234 88888888542
Q ss_pred cccccchhhhhhhhhccccCCCCCCcCeeEEccCCchhhhhhcC
Q 038658 766 LTCIFSKNELLATLESLEVGNLPPSLKSLEVLSCSKLESIAERL 809 (831)
Q Consensus 766 l~~i~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~l~~l~~~~ 809 (831)
.+ .+.+|++|+.|.+.+|..-..++.+.
T Consensus 409 ~~----------------~~~iP~sl~~L~~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 409 RE----------------FPDIPESVEDLRMNSERVVDPYEFAH 436 (454)
T ss_dssp --------------------------------------------
T ss_pred Cc----------------cccchhhHhheeCcCcccCCccccCH
Confidence 21 12356778888887776544444333
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=8.1e-27 Score=256.99 Aligned_cols=100 Identities=21% Similarity=0.216 Sum_probs=68.3
Q ss_pred cceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCC-cc-chhhhccCCccEEeecCcCccccccccccCcccccccc
Q 038658 192 QRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIR-TL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLN 268 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~-~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 268 (831)
++|++|+|++|.++.+ |..|+++++|++|++++|.+. .+ |..+.++++|++|++++|......|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 5677777777777766 666777777777777777765 44 45677777777777777765555566777777777777
Q ss_pred cCCCCCcccccCC--CCCccccccc
Q 038658 269 NSNTDSLEEMPLG--IGKLTCLQTL 291 (831)
Q Consensus 269 l~~~~~~~~~p~~--~~~L~~L~~L 291 (831)
+++|...+.+|.. ++++++|++|
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L 134 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEML 134 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred CCCCCCCccccCcccccCcccCCEE
Confidence 7777644434433 5666666655
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.1e-25 Score=247.76 Aligned_cols=95 Identities=19% Similarity=0.308 Sum_probs=53.1
Q ss_pred CcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658 191 LQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS 270 (831)
Q Consensus 191 l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 270 (831)
+++++.|+++++.+..+|. +..+++|++|++++|.++.+|. ++++++|++|++++|. +..+|. ++++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECC
Confidence 4455666666666655542 5556666666666666665554 6666666666666654 333333 6666666666666
Q ss_pred CCCCcccccCCCCCccccccc
Q 038658 271 NTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 271 ~~~~~~~~p~~~~~L~~L~~L 291 (831)
+|. +..+|. ++++++|++|
T Consensus 121 ~n~-l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 121 NNQ-ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp SSC-CCCCGG-GTTCTTCSEE
T ss_pred CCC-CCCChH-HcCCCCCCEE
Confidence 665 333332 4444444444
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.1e-26 Score=255.83 Aligned_cols=94 Identities=19% Similarity=0.155 Sum_probs=79.3
Q ss_pred EEEEeCCCCccccCccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccc-cccccCcccccccccCCC
Q 038658 195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKL-CAGMGNLIKLHHLNNSNT 272 (831)
Q Consensus 195 ~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~l~~~ 272 (831)
+.++.+++.++.+|. +. ++|++|+|++|.++.+ |..++++++|++|++++|.....+ |..+.++++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 457788888999987 43 8999999999999977 778999999999999998765555 556999999999999999
Q ss_pred CCcccccCCCCCccccccc
Q 038658 273 DSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 273 ~~~~~~p~~~~~L~~L~~L 291 (831)
.+.+..|..++++++|++|
T Consensus 90 ~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCEECTTTTTTCTTCCEE
T ss_pred ccCccChhhccCcccCCEE
Confidence 8555557778888888777
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3e-26 Score=249.52 Aligned_cols=358 Identities=16% Similarity=0.158 Sum_probs=222.7
Q ss_pred cccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccc
Q 038658 185 LPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKL 264 (831)
Q Consensus 185 ~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L 264 (831)
+..+..+++|++|++++|.++.+| +++.+++|++|++++|.++.+| ++.+++|++|++++|. +..+| ++++++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L 108 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKL 108 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcC
Confidence 344557788888888888888876 6888888888888888888876 7888888888888876 44454 7888888
Q ss_pred cccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCC
Q 038658 265 HHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNST 344 (831)
Q Consensus 265 ~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~ 344 (831)
++|++++|. +..+| ++.+++|++|... .+.+.. ..+..+++|+.|+++.|...
T Consensus 109 ~~L~L~~N~-l~~l~--~~~l~~L~~L~l~---------------------~N~l~~---l~l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 109 TYLNCDTNK-LTKLD--VSQNPLLTYLNCA---------------------RNTLTE---IDVSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp CEEECCSSC-CSCCC--CTTCTTCCEEECT---------------------TSCCSC---CCCTTCTTCCEEECTTCSCC
T ss_pred CEEECCCCc-CCeec--CCCCCcCCEEECC---------------------CCccce---eccccCCcCCEEECCCCCcc
Confidence 888888887 44454 7777777777211 111111 12445566666666555322
Q ss_pred CCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEeccc
Q 038658 345 DGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRM 424 (831)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~ 424 (831)
.. . .+..+++|+.|++++|.+..+| +. .+++|+.|++++|.+.+. .++.+++|+.|+++++
T Consensus 162 ~~-----------~--~~~~l~~L~~L~ls~n~l~~l~--l~--~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 162 TK-----------L--DVTPQTQLTTLDCSFNKITELD--VS--QNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp CC-----------C--CCTTCTTCCEEECCSSCCCCCC--CT--TCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSS
T ss_pred cc-----------c--ccccCCcCCEEECCCCccceec--cc--cCCCCCEEECcCCcCCee--ccccCCCCCEEECcCC
Confidence 11 0 2444566666666666665555 22 256666666666655443 3555556666655543
Q ss_pred cCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCCCcccEEEEcc
Q 038658 425 SRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGG 504 (831)
Q Consensus 425 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~ 504 (831)
. + .. .+ ++.+++|+.|++++ +.+++..+..+++|+.|++++
T Consensus 223 ~-l------------------------------~~-----ip--~~~l~~L~~L~l~~-N~l~~~~~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 223 K-L------------------------------TE-----ID--VTPLTQLTYFDCSV-NPLTELDVSTLSKLTTLHCIQ 263 (457)
T ss_dssp C-C------------------------------SC-----CC--CTTCTTCSEEECCS-SCCSCCCCTTCTTCCEEECTT
T ss_pred c-c------------------------------cc-----cC--ccccCCCCEEEeeC-CcCCCcCHHHCCCCCEEeccC
Confidence 2 1 11 01 34577888888887 466644445677777777654
Q ss_pred ccCccccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccC
Q 038658 505 CEELLVSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRH 584 (831)
Q Consensus 505 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 584 (831)
+ +|+.|++++|....... ...+++|+.|++++|..+.. .+
T Consensus 264 n-----------~L~~L~l~~n~~~~~~~--------------------------~~~l~~L~~L~Ls~n~~l~~---l~ 303 (457)
T 3bz5_A 264 T-----------DLLEIDLTHNTQLIYFQ--------------------------AEGCRKIKELDVTHNTQLYL---LD 303 (457)
T ss_dssp C-----------CCSCCCCTTCTTCCEEE--------------------------CTTCTTCCCCCCTTCTTCCE---EE
T ss_pred C-----------CCCEEECCCCccCCccc--------------------------ccccccCCEEECCCCcccce---ec
Confidence 3 45666777766332111 13467888888888876654 22
Q ss_pred CcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccc
Q 038658 585 NGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSF 664 (831)
Q Consensus 585 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l 664 (831)
...++|+.|++++| ++|++|++++|...+ ++ +..+++|+.|++++| .++.+
T Consensus 304 ----~~~~~L~~L~l~~~---------------------~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 304 ----CQAAGITELDLSQN---------------------PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp ----CTTCCCSCCCCTTC---------------------TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSS-CCCBC
T ss_pred ----cCCCcceEechhhc---------------------ccCCEEECCCCcccc-cc--cccCCcCcEEECCCC-CCCCc
Confidence 24466676766665 368899999988655 43 888999999999998 55554
Q ss_pred cCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceecc
Q 038658 665 PEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAE 715 (831)
Q Consensus 665 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 715 (831)
+ +|..|.++++. +...+ . +.+|+.++++++.--..+|.
T Consensus 355 ~------~L~~L~l~~n~-l~g~~----~--~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 355 S------SVGKIPALNNN-FEAEG----Q--TITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp T------TGGGSSGGGTS-EEEEE----E--EEECCCBCCBTTBEEEECCT
T ss_pred c------ccccccccCCc-EEecc----e--eeecCccccccCcEEEEcCh
Confidence 3 44444444422 11111 1 45566677776533334543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=4.8e-25 Score=242.62 Aligned_cols=118 Identities=21% Similarity=0.336 Sum_probs=93.2
Q ss_pred cCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCC
Q 038658 160 NIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYN 239 (831)
Q Consensus 160 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~ 239 (831)
.+++++.|.+.+.. + ..+ +.+..+++|++|++++|.++.+|. ++.+++|++|++++|.+..+|. ++++++
T Consensus 44 ~l~~l~~L~l~~~~------i-~~l-~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 44 DLDQVTTLQADRLG------I-KSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTN 113 (466)
T ss_dssp HHHTCCEEECCSSC------C-CCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred HhccccEEecCCCC------C-ccC-cchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCC
Confidence 34566777554322 1 122 345688999999999999999876 9999999999999999998877 999999
Q ss_pred ccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccc
Q 038658 240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 240 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
|++|++++|. +..+|. ++++++|++|++++|. +..+| .++.+++|+.|
T Consensus 114 L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L 161 (466)
T 1o6v_A 114 LTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQL 161 (466)
T ss_dssp CCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEE
T ss_pred CCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEe
Confidence 9999999975 556665 8999999999999997 55555 36777777766
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=4.7e-25 Score=240.08 Aligned_cols=226 Identities=20% Similarity=0.180 Sum_probs=159.3
Q ss_pred ccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhc
Q 038658 157 DLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK 236 (831)
Q Consensus 157 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~ 236 (831)
.+.++++|++|.+.+ +.+.+ +| .+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| +++
T Consensus 37 ~~~~l~~L~~L~Ls~------n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~ 104 (457)
T 3bz5_A 37 SEEQLATLTSLDCHN------SSITD-MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTP 104 (457)
T ss_dssp EHHHHTTCCEEECCS------SCCCC-CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred ChhHcCCCCEEEccC------CCccc-Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCC
Confidence 456678888886543 23332 33 5668899999999999988886 888999999999999998885 889
Q ss_pred cCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCe
Q 038658 237 LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGT 316 (831)
Q Consensus 237 L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 316 (831)
+++|++|++++|. +..+| ++.+++|++|++++|. +..++ ++++++|++|......
T Consensus 105 l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~------------------- 159 (457)
T 3bz5_A 105 LTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNK------------------- 159 (457)
T ss_dssp CTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCS-------------------
T ss_pred CCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCC-------------------
Confidence 9999999999975 45565 8899999999999988 54454 7788888877321110
Q ss_pred eeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEE
Q 038658 317 LTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTL 396 (831)
Q Consensus 317 l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L 396 (831)
.+.. ..+..+++|+.|++++|..... . +..+++|+.|++++|.+..++ +. .+++|+.|
T Consensus 160 -~~~~---~~~~~l~~L~~L~ls~n~l~~l-------------~-l~~l~~L~~L~l~~N~l~~~~--l~--~l~~L~~L 217 (457)
T 3bz5_A 160 -KITK---LDVTPQTQLTTLDCSFNKITEL-------------D-VSQNKLLNRLNCDTNNITKLD--LN--QNIQLTFL 217 (457)
T ss_dssp -CCCC---CCCTTCTTCCEEECCSSCCCCC-------------C-CTTCTTCCEEECCSSCCSCCC--CT--TCTTCSEE
T ss_pred -cccc---cccccCCcCCEEECCCCcccee-------------c-cccCCCCCEEECcCCcCCeec--cc--cCCCCCEE
Confidence 0111 1355667788888877765321 1 556678888888888877764 33 37888888
Q ss_pred EEecCCCCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeecc
Q 038658 397 KFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFE 452 (831)
Q Consensus 397 ~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 452 (831)
++++|.+.+ +| ++.+++|+.|+++++. +..++ ...+++|+.|.+.
T Consensus 218 ~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~-l~~~~--------~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 218 DCSSNKLTE-ID-VTPLTQLTYFDCSVNP-LTELD--------VSTLSKLTTLHCI 262 (457)
T ss_dssp ECCSSCCSC-CC-CTTCTTCSEEECCSSC-CSCCC--------CTTCTTCCEEECT
T ss_pred ECcCCcccc-cC-ccccCCCCEEEeeCCc-CCCcC--------HHHCCCCCEEecc
Confidence 888888776 55 7788888888888763 22221 2336666666553
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.1e-23 Score=222.72 Aligned_cols=80 Identities=24% Similarity=0.429 Sum_probs=62.6
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
.+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. +..+++|++|++++|. +..+| .++.+++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEEC
Confidence 66778888888888887764 7788888888888888888776 8888888888888874 45554 4778888888888
Q ss_pred CCCC
Q 038658 270 SNTD 273 (831)
Q Consensus 270 ~~~~ 273 (831)
++|.
T Consensus 118 ~~n~ 121 (347)
T 4fmz_A 118 NEDN 121 (347)
T ss_dssp TTSC
T ss_pred cCCc
Confidence 7776
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.7e-23 Score=224.84 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=67.7
Q ss_pred CCcceEEEEeCCCCccccCcc-ccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDS-IGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL 267 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~-~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 267 (831)
.++++++|+++++.++.+|.. +..+++|++|++++|.++.+|. .++.+++|++|++++|......|..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 567788888888888888765 4778888888888888887754 77888888888888876444445557888888888
Q ss_pred ccCCCCCcccccC
Q 038658 268 NNSNTDSLEEMPL 280 (831)
Q Consensus 268 ~l~~~~~~~~~p~ 280 (831)
++++|. +..+|.
T Consensus 123 ~L~~n~-l~~l~~ 134 (390)
T 3o6n_A 123 VLERND-LSSLPR 134 (390)
T ss_dssp ECCSSC-CCCCCT
T ss_pred ECCCCc-cCcCCH
Confidence 888776 444543
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2e-23 Score=231.07 Aligned_cols=105 Identities=24% Similarity=0.311 Sum_probs=72.9
Q ss_pred ccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccc-cccC
Q 038658 184 ILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCA-GMGN 260 (831)
Q Consensus 184 ~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~ 260 (831)
+|..+. +.+++|+|++|.++.+ |..|.++++|++|+|++|.++.+ |..++++++|++|++++|. +..+|. .+++
T Consensus 26 ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 102 (477)
T 2id5_A 26 VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTG 102 (477)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTT
T ss_pred CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccC
Confidence 444443 4677888888888777 56778888888888888888766 6677888888888888765 445554 3677
Q ss_pred cccccccccCCCCCcccccCCCCCccccccc
Q 038658 261 LIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 261 L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
+++|++|++++|.+....|..++++++|++|
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEE
Confidence 8888888888877444444455555555555
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.9e-23 Score=224.46 Aligned_cols=302 Identities=17% Similarity=0.126 Sum_probs=222.6
Q ss_pred cCCcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccc-hhhhc
Q 038658 160 NIQHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLP-ESVNK 236 (831)
Q Consensus 160 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~ 236 (831)
.+++++.+.+.+. ....+|+.++ .+++|++|++++|.++.++ ..|+.+++|++|++++|.++.+| ..+++
T Consensus 43 ~l~~l~~l~l~~~-------~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-------TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGCCCSEEEEESC-------EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCceEEEecCC-------chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 4567777755432 2345676665 8899999999999998885 58899999999999999999775 55799
Q ss_pred cCCccEEeecCcCcccccccc-ccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccC
Q 038658 237 LYNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRG 315 (831)
Q Consensus 237 L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 315 (831)
+++|++|++++|. +..+|.. ++++++|++|++++|.+....|..++.+++|++|....
T Consensus 116 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-------------------- 174 (390)
T 3o6n_A 116 VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-------------------- 174 (390)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS--------------------
T ss_pred CCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC--------------------
Confidence 9999999999975 5677766 58999999999999985444455688899998883211
Q ss_pred eeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeE
Q 038658 316 TLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVT 395 (831)
Q Consensus 316 ~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~ 395 (831)
..+....+..+++|+.|++++|... .+....+|+.|+++++.+..+|... +++|+.
T Consensus 175 ----n~l~~~~~~~l~~L~~L~l~~n~l~----------------~~~~~~~L~~L~l~~n~l~~~~~~~----~~~L~~ 230 (390)
T 3o6n_A 175 ----NRLTHVDLSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINVVRGPV----NVELTI 230 (390)
T ss_dssp ----SCCSBCCGGGCTTCSEEECCSSCCS----------------EEECCSSCSEEECCSSCCCEEECCC----CSSCCE
T ss_pred ----CcCCccccccccccceeeccccccc----------------ccCCCCcceEEECCCCeeeeccccc----cccccE
Confidence 1111223455677788887665432 2334568899999998888776543 578999
Q ss_pred EEEecCCCCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcc
Q 038658 396 LKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKL 475 (831)
Q Consensus 396 L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L 475 (831)
|++++|.+.. .+.++.+++|+.|+++++......+..+ ..+++|+.|++.+. .+..+ +.....+++|
T Consensus 231 L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~-----~~~~~~l~~L 297 (390)
T 3o6n_A 231 LKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPF------VKMQRLERLYISNN-RLVAL-----NLYGQPIPTL 297 (390)
T ss_dssp EECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGG------TTCSSCCEEECCSS-CCCEE-----ECSSSCCTTC
T ss_pred EECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHc------cccccCCEEECCCC-cCccc-----CcccCCCCCC
Confidence 9999998765 3677888999999998875333323222 23789999999874 23222 1224578999
Q ss_pred cEEeEcCCcCcccCCCC---CCCcccEEEEccccCccccCCCCCccceEEEcCCCC
Q 038658 476 RELEVIGCSKLKGTFPE---HLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKK 528 (831)
Q Consensus 476 ~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~ 528 (831)
++|++++| .++ .+|. .+++|+.|++++|......+..+++|+.|++++|+.
T Consensus 298 ~~L~L~~n-~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 298 KVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred CEEECCCC-cce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCc
Confidence 99999995 676 6664 568999999999996665678899999999999984
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.6e-22 Score=213.84 Aligned_cols=123 Identities=20% Similarity=0.318 Sum_probs=93.0
Q ss_pred cccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhh
Q 038658 156 EDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVN 235 (831)
Q Consensus 156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~ 235 (831)
..+..+++|+.|.+.+.. + ..+ +.+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+.
T Consensus 38 ~~~~~l~~L~~L~l~~~~------i-~~~-~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~ 107 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEK------V-ASI-QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQ 107 (347)
T ss_dssp ECHHHHTTCSEEECCSSC------C-CCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred ccchhcccccEEEEeCCc------c-ccc-hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHc
Confidence 344567788888665432 1 122 346689999999999999999876 899999999999999999886 699
Q ss_pred ccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccc
Q 038658 236 KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 236 ~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
++++|++|++++|. +..+|. +..+++|++|++++|.....++ .++.+++|++|
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L 160 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYL 160 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEE
T ss_pred CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEE
Confidence 99999999999976 556665 8899999999999986444433 24444444433
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=224.48 Aligned_cols=224 Identities=19% Similarity=0.148 Sum_probs=163.9
Q ss_pred CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccCC
Q 038658 162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYN 239 (831)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~ 239 (831)
++++.|.+. .+.+....+..+..+++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+|. .+.++++
T Consensus 32 ~~l~~L~L~------~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLG------KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECC------SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCcEEECC------CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 578888553 3445444455666999999999999999987 8899999999999999999999986 4799999
Q ss_pred ccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeE
Q 038658 240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTI 319 (831)
Q Consensus 240 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i 319 (831)
|++|++++|......|..+..+++|++|++++|......|..++.+++|++|... ...+
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~---------------------~n~l 164 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE---------------------KCNL 164 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE---------------------SCCC
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC---------------------CCcC
Confidence 9999999988666677889999999999999998555556678888888888221 1223
Q ss_pred cccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecC-CCCCccCCCCCCCceeEEEE
Q 038658 320 SKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGG-TKFPIWLGDSSFSNLVTLKF 398 (831)
Q Consensus 320 ~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~~~~~~~~~L~~L~l 398 (831)
..+....+..+++|+.|++++|..... ....+..+++|+.|+++++.. ..+|..... ..+|+.|++
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~-----------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l 231 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAI-----------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--GLNLTSLSI 231 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEE-----------CTTCSCSCTTCCEEEEECCTTCCEECTTTTT--TCCCSEEEE
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEe-----------ChhhcccCcccceeeCCCCccccccCccccc--CccccEEEC
Confidence 333445567778888888877664321 223466677788888877653 334444433 347888888
Q ss_pred ecCCCCCCCC-CCCCCCCcceEEecccc
Q 038658 399 EDCGMCTTLP-SVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 399 ~~~~~~~~~~-~l~~l~~L~~L~L~~~~ 425 (831)
++|.+....+ .+..+++|+.|+++++.
T Consensus 232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 232 THCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp ESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred cCCcccccCHHHhcCccccCeeECCCCc
Confidence 8777653332 46677777777777654
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=6.9e-23 Score=232.43 Aligned_cols=302 Identities=17% Similarity=0.120 Sum_probs=224.6
Q ss_pred cCCcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccch-hhhc
Q 038658 160 NIQHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPE-SVNK 236 (831)
Q Consensus 160 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~ 236 (831)
.+.+++.+.+.+. ....+|+.++ .+++|++|+|++|.++.+| ..|+.+++|++|+|++|.++.+|+ .+++
T Consensus 49 ~l~~l~~l~l~~~-------~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNS-------TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSC-------EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCC-------CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 3567777754332 2345677766 8999999999999999884 588999999999999999998865 5699
Q ss_pred cCCccEEeecCcCcccccccc-ccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccC
Q 038658 237 LYNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRG 315 (831)
Q Consensus 237 L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 315 (831)
+++|++|++++|. +..+|.. ++++++|++|++++|.+.+..|..++.+++|++|....
T Consensus 122 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-------------------- 180 (597)
T 3oja_B 122 VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-------------------- 180 (597)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT--------------------
T ss_pred CCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC--------------------
Confidence 9999999999986 5567665 68999999999999985555556699999999883211
Q ss_pred eeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeE
Q 038658 316 TLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVT 395 (831)
Q Consensus 316 ~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~ 395 (831)
..+....+..+++|+.|++++|... .+..+.+|+.|++++|.+..+|..+ .++|+.
T Consensus 181 ----N~l~~~~~~~l~~L~~L~l~~n~l~----------------~l~~~~~L~~L~ls~n~l~~~~~~~----~~~L~~ 236 (597)
T 3oja_B 181 ----NRLTHVDLSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINVVRGPV----NVELTI 236 (597)
T ss_dssp ----SCCSBCCGGGCTTCSEEECCSSCCS----------------EEECCTTCSEEECCSSCCCEEECSC----CSCCCE
T ss_pred ----CCCCCcChhhhhhhhhhhcccCccc----------------cccCCchhheeeccCCccccccccc----CCCCCE
Confidence 1111123445677888887665432 2344568899999998887776654 468999
Q ss_pred EEEecCCCCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcc
Q 038658 396 LKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKL 475 (831)
Q Consensus 396 L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L 475 (831)
|++++|.+.+ .+.++.+++|+.|+++++......+..+. .+++|+.|++.+. .+..+ +.....+++|
T Consensus 237 L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~------~l~~L~~L~Ls~N-~l~~l-----~~~~~~l~~L 303 (597)
T 3oja_B 237 LKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFV------KMQRLERLYISNN-RLVAL-----NLYGQPIPTL 303 (597)
T ss_dssp EECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGT------TCSSCCEEECTTS-CCCEE-----ECSSSCCTTC
T ss_pred EECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhc------CccCCCEEECCCC-CCCCC-----CcccccCCCC
Confidence 9999998765 36788889999999988654333333322 3889999999874 23322 2224578999
Q ss_pred cEEeEcCCcCcccCCCC---CCCcccEEEEccccCccccCCCCCccceEEEcCCCC
Q 038658 476 RELEVIGCSKLKGTFPE---HLPALEMLVIGGCEELLVSITSLPALSKLEIGGCKK 528 (831)
Q Consensus 476 ~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~ 528 (831)
+.|++++| .++ .+|. .+++|+.|++++|......+..+++|+.|++++|+.
T Consensus 304 ~~L~Ls~N-~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 304 KVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred cEEECCCC-CCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 99999995 676 6665 578999999999996666678899999999999983
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=7.9e-22 Score=223.70 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=62.9
Q ss_pred CCcceEEEEeCCCCccccCcc-ccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDS-IGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL 267 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~-~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 267 (831)
.+.++++|++++|.+..+|.. +..+++|++|+|++|.++.+|. .++.+++|++|++++|......|..++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456778888888887777654 4677888888888888776653 77778888888888776444444456777777777
Q ss_pred ccCCCCCccccc
Q 038658 268 NNSNTDSLEEMP 279 (831)
Q Consensus 268 ~l~~~~~~~~~p 279 (831)
++++|. +..+|
T Consensus 129 ~L~~n~-l~~l~ 139 (597)
T 3oja_B 129 VLERND-LSSLP 139 (597)
T ss_dssp ECCSSC-CCCCC
T ss_pred EeeCCC-CCCCC
Confidence 777776 44444
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=5.8e-22 Score=206.26 Aligned_cols=216 Identities=22% Similarity=0.343 Sum_probs=154.5
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
...++++|+|++|.++.+|..++++++|++|+|++|.++.+|..++++++|++|++++|. +..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 457899999999999999999999999999999999999999999999999999999986 5589999999999999999
Q ss_pred CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658 270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL 349 (831)
Q Consensus 270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~ 349 (831)
++|...+.+|..++...-. ..+.++++|+.|++++|....
T Consensus 158 ~~n~~~~~~p~~~~~~~~~------------------------------------~~~~~l~~L~~L~L~~n~l~~---- 197 (328)
T 4fcg_A 158 RACPELTELPEPLASTDAS------------------------------------GEHQGLVNLQSLRLEWTGIRS---- 197 (328)
T ss_dssp EEETTCCCCCSCSEEEC-C------------------------------------CCEEESTTCCEEEEEEECCCC----
T ss_pred CCCCCccccChhHhhccch------------------------------------hhhccCCCCCEEECcCCCcCc----
Confidence 9988788888766431100 113344566666776665431
Q ss_pred hhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCce
Q 038658 350 REAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVR 428 (831)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~ 428 (831)
.+..+..+++|+.|++++|.+..+|..+.. +++|+.|++++|.+.+.+| .++.+++|+.|++++|+...
T Consensus 198 --------lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 198 --------LPASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp --------CCGGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred --------chHhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 223345556666666666666666655543 5666666666666666555 45666666666666654333
Q ss_pred eeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC
Q 038658 429 RLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE 492 (831)
Q Consensus 429 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~ 492 (831)
.++ ..+..+++|++|++++|+.+. .+|.
T Consensus 268 ~~p-----------------------------------~~~~~l~~L~~L~L~~n~~~~-~iP~ 295 (328)
T 4fcg_A 268 TLP-----------------------------------LDIHRLTQLEKLDLRGCVNLS-RLPS 295 (328)
T ss_dssp BCC-----------------------------------TTGGGCTTCCEEECTTCTTCC-CCCG
T ss_pred hcc-----------------------------------hhhhcCCCCCEEeCCCCCchh-hccH
Confidence 222 113456777777777765543 6665
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=4.6e-21 Score=200.72 Aligned_cols=282 Identities=18% Similarity=0.190 Sum_probs=167.1
Q ss_pred ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658 193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN 271 (831)
Q Consensus 193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 271 (831)
++++++++++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++|......|..++.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 45556666665655555443 455666666666665543 456666666666666543333355566666666666666
Q ss_pred CCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhh
Q 038658 272 TDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLRE 351 (831)
Q Consensus 272 ~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 351 (831)
|. ++.+|..+. ++|++|.. . ...+..+....+.++++|+.|+++.|.....
T Consensus 110 n~-l~~l~~~~~--~~L~~L~l--------------------~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----- 160 (330)
T 1xku_A 110 NQ-LKELPEKMP--KTLQELRV--------------------H-ENEITKVRKSVFNGLNQMIVVELGTNPLKSS----- 160 (330)
T ss_dssp SC-CSBCCSSCC--TTCCEEEC--------------------C-SSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----
T ss_pred Cc-CCccChhhc--ccccEEEC--------------------C-CCcccccCHhHhcCCccccEEECCCCcCCcc-----
Confidence 55 445554433 34444411 1 1122223333455556666666655543210
Q ss_pred hhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceee
Q 038658 352 AETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRL 430 (831)
Q Consensus 352 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~ 430 (831)
......+..+++|+.|+++++....+|..+ +++|+.|++++|.+.+..+ .+..+++|+.|+++++. +..+
T Consensus 161 ----~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 231 (330)
T 1xku_A 161 ----GIENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAV 231 (330)
T ss_dssp ----GBCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEE
T ss_pred ----CcChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-Ccee
Confidence 012234566788888888888888877665 3788889998888776655 67888889999988764 3333
Q ss_pred CccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC----------CCCcccEE
Q 038658 431 GSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE----------HLPALEML 500 (831)
Q Consensus 431 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~----------~l~~L~~L 500 (831)
+...+ ..+++|+.|++.+.. +. ..+..+..+++|++|++++| .++ .+|. ..+.++.|
T Consensus 232 ~~~~~-----~~l~~L~~L~L~~N~-l~-----~lp~~l~~l~~L~~L~l~~N-~i~-~~~~~~f~~~~~~~~~~~l~~l 298 (330)
T 1xku_A 232 DNGSL-----ANTPHLRELHLNNNK-LV-----KVPGGLADHKYIQVVYLHNN-NIS-AIGSNDFCPPGYNTKKASYSGV 298 (330)
T ss_dssp CTTTG-----GGSTTCCEEECCSSC-CS-----SCCTTTTTCSSCCEEECCSS-CCC-CCCTTSSSCSSCCTTSCCCSEE
T ss_pred Chhhc-----cCCCCCCEEECCCCc-Cc-----cCChhhccCCCcCEEECCCC-cCC-ccChhhcCCcccccccccccce
Confidence 32222 237788888888742 22 23333667889999999984 666 4432 23677888
Q ss_pred EEccccCc-----cccCCCCCccceEEEcCCC
Q 038658 501 VIGGCEEL-----LVSITSLPALSKLEIGGCK 527 (831)
Q Consensus 501 ~l~~~~~l-----~~~~~~l~~L~~L~l~~~~ 527 (831)
++.+|+.. +..+..+++++.+++++|+
T Consensus 299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EeecCcccccccCccccccccceeEEEecccC
Confidence 88888742 2345667888888887763
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=2.9e-21 Score=202.34 Aligned_cols=281 Identities=16% Similarity=0.154 Sum_probs=189.2
Q ss_pred ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658 193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN 271 (831)
Q Consensus 193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 271 (831)
++++++++++.++.+|..+. ++|++|++++|.++.+| ..++++++|++|++++|......|..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 57777777777777776663 57778888887777664 4677788888888877764444466777788888888877
Q ss_pred CCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhh
Q 038658 272 TDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLRE 351 (831)
Q Consensus 272 ~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 351 (831)
|. +..+|..+. ++|++|.. . .+.+..+....+.++++|+.|++++|.....
T Consensus 112 n~-l~~l~~~~~--~~L~~L~l--------------------~-~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----- 162 (332)
T 2ft3_A 112 NH-LVEIPPNLP--SSLVELRI--------------------H-DNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----- 162 (332)
T ss_dssp SC-CCSCCSSCC--TTCCEEEC--------------------C-SSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-----
T ss_pred Cc-CCccCcccc--ccCCEEEC--------------------C-CCccCccCHhHhCCCccCCEEECCCCccccC-----
Confidence 76 556666554 56666621 1 2233334444566777788888876654210
Q ss_pred hhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceee
Q 038658 352 AETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRL 430 (831)
Q Consensus 352 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~ 430 (831)
......+..+ +|+.|++++|....+|..+ +++|+.|++++|.+....+ .+..+++|+.|+++++. +..+
T Consensus 163 ----~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~ 232 (332)
T 2ft3_A 163 ----GFEPGAFDGL-KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMI 232 (332)
T ss_dssp ----GSCTTSSCSC-CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCC
T ss_pred ----CCCcccccCC-ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcC
Confidence 0122344455 8899999999988888765 3789999999998877665 78889999999998864 3333
Q ss_pred CccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC----------CCCcccEE
Q 038658 431 GSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE----------HLPALEML 500 (831)
Q Consensus 431 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~----------~l~~L~~L 500 (831)
....+ ..+++|+.|++.+.. +. ..+..+..+++|++|++++ +.++ .+|. ..++|+.|
T Consensus 233 ~~~~~-----~~l~~L~~L~L~~N~-l~-----~lp~~l~~l~~L~~L~l~~-N~l~-~~~~~~~~~~~~~~~~~~l~~L 299 (332)
T 2ft3_A 233 ENGSL-----SFLPTLRELHLDNNK-LS-----RVPAGLPDLKLLQVVYLHT-NNIT-KVGVNDFCPVGFGVKRAYYNGI 299 (332)
T ss_dssp CTTGG-----GGCTTCCEEECCSSC-CC-----BCCTTGGGCTTCCEEECCS-SCCC-BCCTTSSSCSSCCSSSCCBSEE
T ss_pred ChhHh-----hCCCCCCEEECCCCc-Ce-----ecChhhhcCccCCEEECCC-CCCC-ccChhHccccccccccccccce
Confidence 32222 237889999988742 22 2333366789999999998 4676 3432 14668899
Q ss_pred EEccccCc-----cccCCCCCccceEEEcCCC
Q 038658 501 VIGGCEEL-----LVSITSLPALSKLEIGGCK 527 (831)
Q Consensus 501 ~l~~~~~l-----~~~~~~l~~L~~L~l~~~~ 527 (831)
++.+|+.. +..+..+++|+.+++++|+
T Consensus 300 ~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EeecCcccccccCcccccccchhhhhhccccc
Confidence 99988733 2456678889999988875
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.2e-21 Score=202.71 Aligned_cols=149 Identities=20% Similarity=0.225 Sum_probs=79.1
Q ss_pred CCeeEEEEEccccCcc-ccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcc-ccCccccCC
Q 038658 137 KNLRHLSCICGKYDGV-KRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWIS-ELPDSIGDL 214 (831)
Q Consensus 137 ~~~r~l~~~~~~~~~~-~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~~~l 214 (831)
..++++.+..+..... .....+.++++|++|.+.+ .+.+.+.+|..+..+++|++|++++|.++ .+|..|+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~-----~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG-----INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEE-----ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCC-----CCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 3456666655544320 1123445555555554431 12234445555555666666666666655 445555666
Q ss_pred CCCceeecCCCCCC-ccchhhhccCCccEEeecCcCccccccccccCcc-cccccccCCCCCcccccCCCCCccccccc
Q 038658 215 RYLRYLNLSGTQIR-TLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLI-KLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 215 ~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~-~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
++|++|++++|.++ .+|..++++++|++|++++|.....+|..++.++ +|++|++++|.+.+.+|..++.++ |+.|
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 66666666666555 4555566666666666666554445555555555 566666666654445555555544 4444
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=5.7e-21 Score=198.78 Aligned_cols=206 Identities=25% Similarity=0.379 Sum_probs=165.1
Q ss_pred CCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCc
Q 038658 161 IQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNL 240 (831)
Q Consensus 161 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 240 (831)
..+++.|.+.+. .+. .+|+.++.+++|++|+|++|.++.+|..++++++|++|+|++|.++.+|..++++++|
T Consensus 80 ~~~l~~L~L~~n------~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSV------PLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESS------CCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred ccceeEEEccCC------Cch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence 456677755432 232 6788888999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCcCccccccccccC---------cccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccc
Q 038658 241 HTLSLEGCRGLRKLCAGMGN---------LIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLT 311 (831)
Q Consensus 241 ~~L~l~~~~~~~~lp~~i~~---------L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~ 311 (831)
++|++++|...+.+|..++. +++|++|++++|. +..+|..++++++|++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L-------------------- 211 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL-------------------- 211 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEE--------------------
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEE--------------------
Confidence 99999999989999987765 8999999999987 55777766666655555
Q ss_pred cccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecC-CCCCccCCCCCC
Q 038658 312 HLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGG-TKFPIWLGDSSF 390 (831)
Q Consensus 312 ~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~~~~~~~ 390 (831)
++++|.... .+..+..+++|+.|++++|.. ..+|.++.. +
T Consensus 212 -------------------------~L~~N~l~~------------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~--l 252 (328)
T 4fcg_A 212 -------------------------KIRNSPLSA------------LGPAIHHLPKLEELDLRGCTALRNYPPIFGG--R 252 (328)
T ss_dssp -------------------------EEESSCCCC------------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC--C
T ss_pred -------------------------EccCCCCCc------------CchhhccCCCCCEEECcCCcchhhhHHHhcC--C
Confidence 444443321 122355667888888888664 356777765 8
Q ss_pred CceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceeeCcc
Q 038658 391 SNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSE 433 (831)
Q Consensus 391 ~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~ 433 (831)
++|+.|++++|...+.+| .++.+++|+.|++++|+....++..
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 999999999999999888 7899999999999998877766544
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=2e-21 Score=201.05 Aligned_cols=223 Identities=17% Similarity=0.165 Sum_probs=151.1
Q ss_pred CcceEEccccccCCCcccccc--cccccccCCcceEEEEeCC-CCcc-ccCccccCCCCCceeecCCCCCC-ccchhhhc
Q 038658 162 QHLRTFLPVCLSNSSQGFLAH--SILPKLFKLQRLRVFSLCG-YWIS-ELPDSIGDLRYLRYLNLSGTQIR-TLPESVNK 236 (831)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~L~~-~~i~-~lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~ 236 (831)
.+++.|.+.+ +.+.+ .+|+.+..+++|++|++++ |.+. .+|..|+++++|++|++++|.++ .+|..+++
T Consensus 50 ~~l~~L~L~~------~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSG------LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEEC------CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCC------CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 4677775543 34455 6778888999999999995 7766 67888999999999999999988 78888999
Q ss_pred cCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCcc-ccccccceEecCCCCCcchhhhccccccC
Q 038658 237 LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLT-CLQTLCNFVVGKDSGSRLRELKLLTHLRG 315 (831)
Q Consensus 237 L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~-~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 315 (831)
+++|++|++++|.....+|..++.+++|++|++++|.+.+.+|..+++++ +|+.|.. .
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L--------------------~- 182 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI--------------------S- 182 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC--------------------C-
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC--------------------c-
Confidence 99999999999876668888899999999999999986668888888887 7887721 1
Q ss_pred eeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeE
Q 038658 316 TLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVT 395 (831)
Q Consensus 316 ~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~ 395 (831)
.+.+.......+..+. |+.|++++|..... .+..+..+++|+.|++++|.+...+..+.. +++|++
T Consensus 183 ~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--l~~L~~ 248 (313)
T 1ogq_A 183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGD-----------ASVLFGSDKNTQKIHLAKNSLAFDLGKVGL--SKNLNG 248 (313)
T ss_dssp SSEEEEECCGGGGGCC-CSEEECCSSEEEEC-----------CGGGCCTTSCCSEEECCSSEECCBGGGCCC--CTTCCE
T ss_pred CCeeeccCChHHhCCc-ccEEECcCCcccCc-----------CCHHHhcCCCCCEEECCCCceeeecCcccc--cCCCCE
Confidence 1122222223333343 66666655543211 233455556666666666665544333332 566666
Q ss_pred EEEecCCCCCCCC-CCCCCCCcceEEecccc
Q 038658 396 LKFEDCGMCTTLP-SVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 396 L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~ 425 (831)
|++++|.+.+.+| .+..+++|+.|+++++.
T Consensus 249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred EECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 6666666654555 45566666666666543
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=7.7e-23 Score=233.41 Aligned_cols=112 Identities=15% Similarity=0.134 Sum_probs=63.9
Q ss_pred cccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCc-ccccccCCCCCCCeEEEecCCCCcc--c
Q 038658 588 LQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLV-KLPQSLLSLSSLREIEIYNCSSFVS--F 664 (831)
Q Consensus 588 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~l~~~l~~l~~L~~L~L~~~~~l~~--l 664 (831)
+.++++|++|++++|.+ .+.... ...+....++|++|++++|.... .++..+..+++|++|+|++|+ ++. +
T Consensus 432 ~~~~~~L~~L~L~~~~~--~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~ 505 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQG--GLTDLG---LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAI 505 (592)
T ss_dssp HHHCTTCCEEEEECCGG--GCCHHH---HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHH
T ss_pred HHhCCCCCEEEEecCCC--CccHHH---HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHH
Confidence 35577778888776653 111111 12223333578888888877543 345556777888888888886 432 1
Q ss_pred cCC-CCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEcc
Q 038658 665 PEV-ALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISR 706 (831)
Q Consensus 665 ~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 706 (831)
+.. ..+++|++|++++|. ++..........++.+....+..
T Consensus 506 ~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 211 126788888888887 44332211122366666665554
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=4.1e-22 Score=227.45 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=38.4
Q ss_pred CCCCCceeecCCCCCC-ccchhhhcc--CCccEEeecCcCccc--cccccccCcccccccccCCCC
Q 038658 213 DLRYLRYLNLSGTQIR-TLPESVNKL--YNLHTLSLEGCRGLR--KLCAGMGNLIKLHHLNNSNTD 273 (831)
Q Consensus 213 ~l~~Lr~L~L~~~~i~-~lp~~i~~L--~~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~l~~~~ 273 (831)
.+++|++|+|++|.++ ..+..+..+ .+|++|++++|.... .++..+.++++|++|++++|.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 175 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS 175 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc
Confidence 6777888888877766 234555553 348888887775322 123334467778888887775
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.3e-19 Score=189.84 Aligned_cols=196 Identities=17% Similarity=0.148 Sum_probs=93.5
Q ss_pred ccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCcccccc-ccccCccccc
Q 038658 188 LFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLC-AGMGNLIKLH 265 (831)
Q Consensus 188 ~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~ 265 (831)
+..+++|++|++++|.++.+ |..|+++++|++|++++|.++.+|..+. ++|++|++++|. +..+| ..++.+++|+
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCC
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCC
Confidence 33555555555555555544 4455555555555555555555554443 455555555543 22332 2345555555
Q ss_pred ccccCCCCCc--ccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecC
Q 038658 266 HLNNSNTDSL--EEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNS 343 (831)
Q Consensus 266 ~L~l~~~~~~--~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~ 343 (831)
+|++++|... +..|..++.+ +|+.|... ...+..+.... .++|+.|++++|..
T Consensus 151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~---------------------~n~l~~l~~~~---~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRIS---------------------EAKLTGIPKDL---PETLNELHLDHNKI 205 (332)
T ss_dssp EEECCSCCCBGGGSCTTSSCSC-CCSCCBCC---------------------SSBCSSCCSSS---CSSCSCCBCCSSCC
T ss_pred EEECCCCccccCCCCcccccCC-ccCEEECc---------------------CCCCCccCccc---cCCCCEEECCCCcC
Confidence 5555555421 1223334444 44444110 11111111111 13555555555543
Q ss_pred CCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCc-cCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEec
Q 038658 344 TDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPI-WLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVR 422 (831)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~ 422 (831)
... ....+..+++|+.|++++|.+..++. ++.. +++|+.|++++|.+....+.+..+++|+.|+++
T Consensus 206 ~~~-----------~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 206 QAI-----------ELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp CCC-----------CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--CTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred Ccc-----------CHHHhcCCCCCCEEECCCCcCCcCChhHhhC--CCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence 322 22345555666666666666555543 3332 566666666666555222245566666666666
Q ss_pred cc
Q 038658 423 RM 424 (831)
Q Consensus 423 ~~ 424 (831)
++
T Consensus 273 ~N 274 (332)
T 2ft3_A 273 TN 274 (332)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=9e-20 Score=192.77 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=65.0
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCcccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLN 268 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 268 (831)
.++...+.+++++.++.+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|......|..++++++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 34445567888888888887665 488888888888888765 788888888888888764444456688888888888
Q ss_pred cCCCCCccccc
Q 038658 269 NSNTDSLEEMP 279 (831)
Q Consensus 269 l~~~~~~~~~p 279 (831)
+++|. +..+|
T Consensus 107 Ls~n~-l~~~~ 116 (353)
T 2z80_A 107 LSYNY-LSNLS 116 (353)
T ss_dssp CCSSC-CSSCC
T ss_pred CCCCc-CCcCC
Confidence 88886 33443
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=2.3e-19 Score=187.73 Aligned_cols=96 Identities=21% Similarity=0.251 Sum_probs=46.6
Q ss_pred ceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658 193 RLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS 270 (831)
Q Consensus 193 ~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 270 (831)
.+++|++++|.++.++. .|+++++|++|++++|.++.+ |..++++++|++|++++|. +..+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECC
Confidence 45555555555555432 445555555555555555544 4455555555555555543 334444433 455555555
Q ss_pred CCCCcccccCCCCCccccccc
Q 038658 271 NTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 271 ~~~~~~~~p~~~~~L~~L~~L 291 (831)
+|.+....+..++++++|++|
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEE
T ss_pred CCcccccCHhHhcCCccccEE
Confidence 554222222224455555544
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1.6e-18 Score=194.04 Aligned_cols=78 Identities=22% Similarity=0.272 Sum_probs=64.5
Q ss_pred cceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658 192 QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN 271 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 271 (831)
.++++|++++|.++.+|..+. ++|++|++++|.|+.+|. .+++|++|++++|. +..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 458999999999999998776 899999999999999987 67899999999976 667776 678888888888
Q ss_pred CCCccccc
Q 038658 272 TDSLEEMP 279 (831)
Q Consensus 272 ~~~~~~~p 279 (831)
|. +..+|
T Consensus 111 N~-l~~l~ 117 (622)
T 3g06_A 111 NP-LTHLP 117 (622)
T ss_dssp CC-CCCCC
T ss_pred Cc-CCCCC
Confidence 86 44444
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=187.87 Aligned_cols=187 Identities=21% Similarity=0.188 Sum_probs=123.6
Q ss_pred cccccccCCcceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCcccccccc-cc
Q 038658 183 SILPKLFKLQRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAG-MG 259 (831)
Q Consensus 183 ~~~~~~~~l~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~-i~ 259 (831)
.+|..++ ++|++|++++|.++.+|. .|.++++|++|++++|.++.++ ..++++++|++|++++|. +..+|.. ++
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 121 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFK 121 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHT
T ss_pred ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhC
Confidence 3455444 478999999999888865 7889999999999999988774 568899999999999876 5556655 88
Q ss_pred CcccccccccCCCCCcccccC--CCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEE
Q 038658 260 NLIKLHHLNNSNTDSLEEMPL--GIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLM 337 (831)
Q Consensus 260 ~L~~L~~L~l~~~~~~~~~p~--~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~ 337 (831)
++++|++|++++|. +..+|. .++++++|++|...... .+..+....+.++++|+.|+
T Consensus 122 ~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~--------------------~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 122 PLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMD--------------------TFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp TCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESS--------------------SCCEECTTTTTTCCEEEEEE
T ss_pred CCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCc--------------------cccccCHHHccCCCCCCEEE
Confidence 89999999999987 556765 57777777777221110 11222233455556666666
Q ss_pred EEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCC
Q 038658 338 LRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCT 405 (831)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~ 405 (831)
+++|..... .+..+..+++|+.|++++|....+|..+.. .+++|+.|++++|.+.+
T Consensus 181 l~~n~l~~~-----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 181 IDASDLQSY-----------EPKSLKSIQNVSHLILHMKQHILLLEIFVD-VTSSVECLELRDTDLDT 236 (353)
T ss_dssp EEETTCCEE-----------CTTTTTTCSEEEEEEEECSCSTTHHHHHHH-HTTTEEEEEEESCBCTT
T ss_pred CCCCCcCcc-----------CHHHHhccccCCeecCCCCccccchhhhhh-hcccccEEECCCCcccc
Confidence 666543221 233455566666666666666555543321 24666666666665543
No 54
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=3.7e-21 Score=219.64 Aligned_cols=84 Identities=20% Similarity=0.349 Sum_probs=56.3
Q ss_pred CCcceEEEEeCCCC-cccc---C------------ccccCCCCCceeecCCCCCCc-cchhhh-ccCCccEEeecCcCcc
Q 038658 190 KLQRLRVFSLCGYW-ISEL---P------------DSIGDLRYLRYLNLSGTQIRT-LPESVN-KLYNLHTLSLEGCRGL 251 (831)
Q Consensus 190 ~l~~L~~L~L~~~~-i~~l---p------------~~~~~l~~Lr~L~L~~~~i~~-lp~~i~-~L~~L~~L~l~~~~~~ 251 (831)
.+++|+.|+++++. +..+ | .....+++|++|+|++|.++. .+..+. .+++|++|++++|..+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 56667777777664 2211 1 112457788888888887763 345554 6888888888888555
Q ss_pred cc--ccccccCcccccccccCCCC
Q 038658 252 RK--LCAGMGNLIKLHHLNNSNTD 273 (831)
Q Consensus 252 ~~--lp~~i~~L~~L~~L~l~~~~ 273 (831)
.. ++..+.++++|++|++++|.
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCE
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCc
Confidence 44 45545578888888888886
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2.6e-17 Score=184.18 Aligned_cols=85 Identities=25% Similarity=0.222 Sum_probs=70.9
Q ss_pred cccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcc
Q 038658 183 SILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLI 262 (831)
Q Consensus 183 ~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~ 262 (831)
.+|..++ ++|++|++++|.++.+|. .+++|++|+|++|.|+.+|. .+++|++|++++|. +..+|. .++
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~ 121 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPA---LPS 121 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCC---CCT
T ss_pred ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCC---CCC
Confidence 4555554 789999999999999987 57899999999999999987 78999999999975 666776 678
Q ss_pred cccccccCCCCCcccccC
Q 038658 263 KLHHLNNSNTDSLEEMPL 280 (831)
Q Consensus 263 ~L~~L~l~~~~~~~~~p~ 280 (831)
+|+.|++++|. +..+|.
T Consensus 122 ~L~~L~L~~N~-l~~lp~ 138 (622)
T 3g06_A 122 GLCKLWIFGNQ-LTSLPV 138 (622)
T ss_dssp TCCEEECCSSC-CSCCCC
T ss_pred CcCEEECCCCC-CCcCCC
Confidence 89999999987 555664
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.5e-18 Score=179.45 Aligned_cols=180 Identities=20% Similarity=0.224 Sum_probs=120.5
Q ss_pred cccccccCCcceEEEEeCCCCccccCcc-ccCCCCCceeecCCCCCCcc---chhhhccCCccEEeecCcCccccccccc
Q 038658 183 SILPKLFKLQRLRVFSLCGYWISELPDS-IGDLRYLRYLNLSGTQIRTL---PESVNKLYNLHTLSLEGCRGLRKLCAGM 258 (831)
Q Consensus 183 ~~~~~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~~~~lp~~i 258 (831)
.+|..+. ++|++|++++|.++.+|.. |+++++|++|++++|.++.+ |..+..+++|++|++++|. +..+|..+
T Consensus 21 ~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~ 97 (306)
T 2z66_A 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF 97 (306)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE
T ss_pred cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhc
Confidence 3444443 5788899999988888754 68889999999999888755 6777888999999999875 56678888
Q ss_pred cCcccccccccCCCCCcccccC--CCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceE
Q 038658 259 GNLIKLHHLNNSNTDSLEEMPL--GIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVL 336 (831)
Q Consensus 259 ~~L~~L~~L~l~~~~~~~~~p~--~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L 336 (831)
..+++|++|++++|. +..++. .+..+++|++|
T Consensus 98 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L--------------------------------------------- 131 (306)
T 2z66_A 98 LGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYL--------------------------------------------- 131 (306)
T ss_dssp ETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEE---------------------------------------------
T ss_pred CCCCCCCEEECCCCc-ccccccchhhhhccCCCEE---------------------------------------------
Confidence 888999999998887 444442 45666655555
Q ss_pred EEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCC--CCccCCCCCCCceeEEEEecCCCCCCCC-CCCCC
Q 038658 337 MLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTK--FPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQL 413 (831)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l 413 (831)
++++|..... ....+..+++|+.|++++|.... +|.++.. +++|+.|++++|.+.+..| .+..+
T Consensus 132 ~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l 198 (306)
T 2z66_A 132 DISHTHTRVA-----------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--LRNLTFLDLSQCQLEQLSPTAFNSL 198 (306)
T ss_dssp ECTTSCCEEC-----------STTTTTTCTTCCEEECTTCEEGGGEECSCCTT--CTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ECCCCcCCcc-----------chhhcccCcCCCEEECCCCccccccchhHHhh--CcCCCEEECCCCCcCCcCHHHhcCC
Confidence 2222211100 12234445666666666665543 4555543 6777777777777665544 56667
Q ss_pred CCcceEEeccc
Q 038658 414 PSLKHLAVRRM 424 (831)
Q Consensus 414 ~~L~~L~L~~~ 424 (831)
++|+.|+++++
T Consensus 199 ~~L~~L~L~~N 209 (306)
T 2z66_A 199 SSLQVLNMSHN 209 (306)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEECCCC
Confidence 77777777664
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=1.3e-21 Score=215.73 Aligned_cols=94 Identities=26% Similarity=0.210 Sum_probs=51.3
Q ss_pred CCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCc----
Q 038658 563 LPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLV---- 638 (831)
Q Consensus 563 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~---- 638 (831)
.++|++|++++|.--..........+..+++|++|+++++ .+......... ..+....++|++|++++|....
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~--~~l~~~~~~L~~L~L~~n~i~~~~~~ 388 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELC--QGLGQPGSVLRVLWLADCDVSDSSCS 388 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHH--HHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHH--HHHcCCCCceEEEECCCCCCChhhHH
Confidence 3567777777665211100001122355678888888775 44432211110 1111112468888888887553
Q ss_pred ccccccCCCCCCCeEEEecCC
Q 038658 639 KLPQSLLSLSSLREIEIYNCS 659 (831)
Q Consensus 639 ~l~~~l~~l~~L~~L~L~~~~ 659 (831)
.+|..+..+++|++|++++|+
T Consensus 389 ~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 389 SLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHhCCCccEEECCCCC
Confidence 566667777888888888873
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=3.6e-18 Score=186.95 Aligned_cols=98 Identities=27% Similarity=0.331 Sum_probs=76.1
Q ss_pred cceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccc-cccCcccccccc
Q 038658 192 QRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLN 268 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~ 268 (831)
+++++|+|++|.++.+ |..|+++++|++|+|++|.|+.++ ..+.++++|++|+|++|. +..+|. .++.+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEE
Confidence 5788888888888877 677888888888888888888765 678888888888888876 445544 478888888888
Q ss_pred cCCCCCcccccC-CCCCccccccc
Q 038658 269 NSNTDSLEEMPL-GIGKLTCLQTL 291 (831)
Q Consensus 269 l~~~~~~~~~p~-~~~~L~~L~~L 291 (831)
+++|. +..+|. .++++++|+.|
T Consensus 154 L~~N~-l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 154 LRNNP-IESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCC-cceeCHhHHhcCCcccEE
Confidence 88887 455554 47777777777
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.5e-17 Score=181.31 Aligned_cols=225 Identities=22% Similarity=0.245 Sum_probs=143.8
Q ss_pred cccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccc-ccc
Q 038658 183 SILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCA-GMG 259 (831)
Q Consensus 183 ~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~i~ 259 (831)
.+|..+. +++++|+|++|.++.+ +..|.++++|++|+|++|.+..++ ..+.++++|++|++++|. +..+|. .+.
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 133 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFV 133 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSC
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhh
Confidence 4555444 5678888888888877 467788888888888888888765 567888888888888875 445544 578
Q ss_pred CcccccccccCCCCCcccccC-CCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEE
Q 038658 260 NLIKLHHLNNSNTDSLEEMPL-GIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLML 338 (831)
Q Consensus 260 ~L~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l 338 (831)
.+++|++|++++|. +..+|. .+.++++|++| ++
T Consensus 134 ~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L---------------------------------------------~l 167 (440)
T 3zyj_A 134 YLSKLKELWLRNNP-IESIPSYAFNRIPSLRRL---------------------------------------------DL 167 (440)
T ss_dssp SCSSCCEEECCSCC-CCEECTTTTTTCTTCCEE---------------------------------------------EC
T ss_pred ccccCceeeCCCCc-ccccCHHHhhhCcccCEe---------------------------------------------CC
Confidence 88888888888887 444443 46666666666 22
Q ss_pred EeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcc
Q 038658 339 RWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLK 417 (831)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~ 417 (831)
+.++.... .....+..+++|+.|++++|.+..+|.. . .+++|+.|++++|.+....| .+..+++|+
T Consensus 168 ~~~~~l~~----------i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 234 (440)
T 3zyj_A 168 GELKRLSY----------ISEGAFEGLSNLRYLNLAMCNLREIPNL-T--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234 (440)
T ss_dssp CCCTTCCE----------ECTTTTTTCSSCCEEECTTSCCSSCCCC-T--TCSSCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCcce----------eCcchhhcccccCeecCCCCcCcccccc-C--CCcccCEEECCCCccCccChhhhccCccCC
Confidence 11111000 0112345556677777777766666642 2 26777777777777766555 667777777
Q ss_pred eEEeccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC----C
Q 038658 418 HLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE----H 493 (831)
Q Consensus 418 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~----~ 493 (831)
.|+++++. +..+.. ..+..+++|+.|++++ ++++ .+|. .
T Consensus 235 ~L~L~~n~-l~~~~~----------------------------------~~~~~l~~L~~L~L~~-N~l~-~~~~~~~~~ 277 (440)
T 3zyj_A 235 KLWMIQSQ-IQVIER----------------------------------NAFDNLQSLVEINLAH-NNLT-LLPHDLFTP 277 (440)
T ss_dssp EEECTTCC-CCEECT----------------------------------TSSTTCTTCCEEECTT-SCCC-CCCTTTTSS
T ss_pred EEECCCCc-eeEECh----------------------------------hhhcCCCCCCEEECCC-CCCC-ccChhHhcc
Confidence 77777643 222211 1144567777777777 4565 3432 4
Q ss_pred CCcccEEEEcccc
Q 038658 494 LPALEMLVIGGCE 506 (831)
Q Consensus 494 l~~L~~L~l~~~~ 506 (831)
+++|+.|++++|+
T Consensus 278 l~~L~~L~L~~Np 290 (440)
T 3zyj_A 278 LHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEcCCCC
Confidence 5677777777766
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=1.2e-17 Score=182.65 Aligned_cols=240 Identities=21% Similarity=0.210 Sum_probs=159.0
Q ss_pred ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658 193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN 271 (831)
Q Consensus 193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 271 (831)
..+.++.++..++.+|..+. .+|++|+|++|+|+.+ |..+.++++|++|++++|......|..+.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 35678888888999998775 7999999999999977 57899999999999999875555567899999999999999
Q ss_pred CCCcccccCC-CCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChh
Q 038658 272 TDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLR 350 (831)
Q Consensus 272 ~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 350 (831)
|. +..+|.+ ++.+++|++|.. . .+.+..+....+..+++|+.|+++.++....
T Consensus 133 n~-l~~~~~~~~~~l~~L~~L~L--------------------~-~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~---- 186 (452)
T 3zyi_A 133 NW-LTVIPSGAFEYLSKLRELWL--------------------R-NNPIESIPSYAFNRVPSLMRLDLGELKKLEY---- 186 (452)
T ss_dssp SC-CSBCCTTTSSSCTTCCEEEC--------------------C-SCCCCEECTTTTTTCTTCCEEECCCCTTCCE----
T ss_pred Cc-CCccChhhhcccCCCCEEEC--------------------C-CCCcceeCHhHHhcCCcccEEeCCCCCCccc----
Confidence 98 5566654 888888888822 1 2233344445566667777777755332211
Q ss_pred hhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCcee
Q 038658 351 EAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRR 429 (831)
Q Consensus 351 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~ 429 (831)
.....+..+++|+.|++++|.+..+|.. . .+++|+.|++++|.+.+..| .+..+++|+.|+++++. +..
T Consensus 187 ------i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~ 256 (452)
T 3zyi_A 187 ------ISEGAFEGLFNLKYLNLGMCNIKDMPNL-T--PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSL 256 (452)
T ss_dssp ------ECTTTTTTCTTCCEEECTTSCCSSCCCC-T--TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCE
T ss_pred ------cChhhccCCCCCCEEECCCCcccccccc-c--ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-Cce
Confidence 0112344555666666666665555432 1 24556666666655554444 45555555555555432 111
Q ss_pred eCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC----CCCcccEEEEccc
Q 038658 430 LGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE----HLPALEMLVIGGC 505 (831)
Q Consensus 430 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~----~l~~L~~L~l~~~ 505 (831)
+. +..+..+++|+.|++++ ++++ .+|. .+++|+.|++++|
T Consensus 257 ~~----------------------------------~~~~~~l~~L~~L~L~~-N~l~-~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 257 IE----------------------------------RNAFDGLASLVELNLAH-NNLS-SLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp EC----------------------------------TTTTTTCTTCCEEECCS-SCCS-CCCTTSSTTCTTCCEEECCSS
T ss_pred EC----------------------------------HHHhcCCCCCCEEECCC-CcCC-ccChHHhccccCCCEEEccCC
Confidence 11 11245678888888888 4676 4442 4678888888887
Q ss_pred c
Q 038658 506 E 506 (831)
Q Consensus 506 ~ 506 (831)
+
T Consensus 301 p 301 (452)
T 3zyi_A 301 P 301 (452)
T ss_dssp C
T ss_pred C
Confidence 6
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=184.86 Aligned_cols=124 Identities=18% Similarity=0.178 Sum_probs=101.0
Q ss_pred CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccCC
Q 038658 162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYN 239 (831)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~ 239 (831)
++++.|.+.. +.+....+..+.++++|++|+|++|.+..+ +..|.++++|++|+|++|+++.+|. .+..+++
T Consensus 64 ~~l~~L~L~~------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHE------NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCS------CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCcEEEccC------CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 5778875543 444444455666999999999999999988 4789999999999999999999976 6899999
Q ss_pred ccEEeecCcCccccccccccCcccccccccCCCCCcccccCC-CCCccccccc
Q 038658 240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTL 291 (831)
Q Consensus 240 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L 291 (831)
|++|++++|......+..+.++++|++|++++|..++.++.. ++++++|+.|
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 999999998744433446999999999999997767777754 7778777777
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=2.8e-18 Score=177.41 Aligned_cols=222 Identities=18% Similarity=0.140 Sum_probs=145.6
Q ss_pred CcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCcccc---CccccCCCCCceeecCCCCCCccchhhhcc
Q 038658 162 QHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISEL---PDSIGDLRYLRYLNLSGTQIRTLPESVNKL 237 (831)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~l---p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L 237 (831)
++++.|.+.+ +.+. .+|..++ ++++|++|++++|.++.+ |..+..+++|++|++++|.+..+|..+..+
T Consensus 28 ~~l~~L~L~~------n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELES------NKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCS------SCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCEEECCC------CccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence 4677775433 2232 4565544 888888888888887754 566677888888888888888888888888
Q ss_pred CCccEEeecCcCcccccc--ccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccC
Q 038658 238 YNLHTLSLEGCRGLRKLC--AGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRG 315 (831)
Q Consensus 238 ~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 315 (831)
++|++|++++|. +..+| ..+..+++|++|++++|......|..++.+++|++|.. .
T Consensus 101 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--------------------~- 158 (306)
T 2z66_A 101 EQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM--------------------A- 158 (306)
T ss_dssp TTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC--------------------T-
T ss_pred CCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC--------------------C-
Confidence 888888888865 44444 35788888888888888755555666777777777721 1
Q ss_pred eeeEcc-cccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCc-cCCCCCCCce
Q 038658 316 TLTISK-LENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPI-WLGDSSFSNL 393 (831)
Q Consensus 316 ~l~i~~-l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L 393 (831)
...+.. .....+..+++|+.|++++|..... .+..+..+++|+.|++++|.+..++. .+. .+++|
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L 225 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-----------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYK--CLNSL 225 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECTTSCCSBCCSGGGT--TCTTC
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCc-----------CHHHhcCCCCCCEEECCCCccCccChhhcc--CcccC
Confidence 111211 1223455566667776665543221 23445566777777777777666654 333 26777
Q ss_pred eEEEEecCCCCCCCC-CCCCCC-CcceEEecccc
Q 038658 394 VTLKFEDCGMCTTLP-SVGQLP-SLKHLAVRRMS 425 (831)
Q Consensus 394 ~~L~l~~~~~~~~~~-~l~~l~-~L~~L~L~~~~ 425 (831)
+.|++++|.+.+..+ .+..++ +|+.|++++++
T Consensus 226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 777777777766555 566664 77777777654
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=6.8e-18 Score=172.49 Aligned_cols=200 Identities=21% Similarity=0.202 Sum_probs=117.3
Q ss_pred cceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccc-cccccCcccccccc
Q 038658 192 QRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKL-CAGMGNLIKLHHLN 268 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~ 268 (831)
++|++|++++|.++.+| ..|..+++|++|++++|.++.+ |..+.++++|++|++++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 46777777777777764 4567777777777777777766 566777777777777776544444 55677777777777
Q ss_pred cCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCC
Q 038658 269 NSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSS 348 (831)
Q Consensus 269 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~ 348 (831)
+++|.+....|..++++++|++|.. . ...+..+....+..+++|+.|++++|.....
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l--------------------~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 168 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYL--------------------Q-DNALQALPDDTFRDLGNLTHLFLHGNRISSV-- 168 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEEC--------------------C-SSCCCCCCTTTTTTCTTCCEEECCSSCCCEE--
T ss_pred CCCCcCCEECHhHhhCCcCCCEEEC--------------------C-CCcccccCHhHhccCCCccEEECCCCccccc--
Confidence 7777744333455666666666621 1 1112222223344455555555554433211
Q ss_pred hhhhhhHHhhhcCCCCCCCccEEEEeeecCCCC-CccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEecccc
Q 038658 349 LREAETQKGVLDMLKPHKNLEQFFISGYGGTKF-PIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 349 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~ 425 (831)
....+..+++|+.|++++|.+..+ |.++.. +++|+.|++++|.+.+..+ .+..+++|+.|++++++
T Consensus 169 ---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 169 ---------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ---------CTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ---------CHHHhcCccccCEEECCCCcccccCHhHccC--cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 112244556666666666655544 444433 5666666666666554333 35566666666666543
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=2e-21 Score=214.23 Aligned_cols=149 Identities=14% Similarity=0.087 Sum_probs=79.5
Q ss_pred CCeeEEEEEccccCccccccccccCCcceEEccccccCCCcccccc----cccccccCCcceEEEEeCCCCcccc-Cccc
Q 038658 137 KNLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAH----SILPKLFKLQRLRVFSLCGYWISEL-PDSI 211 (831)
Q Consensus 137 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~ 211 (831)
..++++.+..+..........+..+++|++|.+.+.. +.. .++..+..+++|++|++++|.+... +..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~------l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG------LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC------CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC------CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence 3456666665544332212225566677776554322 221 2334444667777777777776542 2222
Q ss_pred -cCCC----CCceeecCCCCCC-----ccchhhhccCCccEEeecCcCcccccccccc-----CcccccccccCCCCCcc
Q 038658 212 -GDLR----YLRYLNLSGTQIR-----TLPESVNKLYNLHTLSLEGCRGLRKLCAGMG-----NLIKLHHLNNSNTDSLE 276 (831)
Q Consensus 212 -~~l~----~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~-----~L~~L~~L~l~~~~~~~ 276 (831)
..+. +|++|++++|.++ .+|..+..+++|++|++++|......+..+. ..++|++|++++|....
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 2333 5777777777766 3466677777777777777653322222222 24567777777776332
Q ss_pred c----ccCCCCCccccccc
Q 038658 277 E----MPLGIGKLTCLQTL 291 (831)
Q Consensus 277 ~----~p~~~~~L~~L~~L 291 (831)
. ++..++.+++|++|
T Consensus 157 ~~~~~l~~~l~~~~~L~~L 175 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKEL 175 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHhhCCCCCEE
Confidence 1 23334444555555
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=3e-19 Score=185.27 Aligned_cols=248 Identities=14% Similarity=0.129 Sum_probs=145.5
Q ss_pred CCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccc
Q 038658 190 KLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLN 268 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 268 (831)
.+++|++|++++|.++.++ ..|+.+++|++|++++|.++.+++ +..+++|++|++++|. +..+| ..++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCEEE
Confidence 6677888888888887764 677888888888888888876654 7888888888888865 44443 347888888
Q ss_pred cCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCC
Q 038658 269 NSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSS 348 (831)
Q Consensus 269 l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~ 348 (831)
+++|. +..++.. .+++|++|.. . .+.+..+....+..+++|+.|++++|.....
T Consensus 106 l~~n~-l~~~~~~--~~~~L~~L~l--------------------~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-- 159 (317)
T 3o53_A 106 AANNN-ISRVSCS--RGQGKKNIYL--------------------A-NNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-- 159 (317)
T ss_dssp CCSSC-CSEEEEC--CCSSCEEEEC--------------------C-SSCCCSGGGBCTGGGSSEEEEECTTSCCCEE--
T ss_pred CCCCc-cCCcCcc--ccCCCCEEEC--------------------C-CCCCCCccchhhhccCCCCEEECCCCCCCcc--
Confidence 88887 4434322 2455555511 1 2233333344455566666776665544321
Q ss_pred hhhhhhHHhhhcCC-CCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEeccccCc
Q 038658 349 LREAETQKGVLDML-KPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRV 427 (831)
Q Consensus 349 ~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l 427 (831)
.+..+ ..+++|+.|++++|.+..+|.... +++|+.|++++|.+....+.+..+++|+.|+++++ .+
T Consensus 160 ---------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l 226 (317)
T 3o53_A 160 ---------NFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KL 226 (317)
T ss_dssp ---------EGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CC
T ss_pred ---------cHHHHhhccCcCCEEECCCCcCcccccccc---cccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cc
Confidence 11112 245677777777777666654432 56777777777776654445666777777777765 33
Q ss_pred eeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC
Q 038658 428 RRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE 492 (831)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~ 492 (831)
..++..+ ..+++|+.|++.+.+-..... +..+..+++|+.+++.+|+.+++..|.
T Consensus 227 ~~l~~~~------~~l~~L~~L~l~~N~~~~~~~----~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 227 VLIEKAL------RFSQNLEHFDLRGNGFHCGTL----RDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CEECTTC------CCCTTCCEEECTTCCCBHHHH----HHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred cchhhHh------hcCCCCCEEEccCCCccCcCH----HHHHhccccceEEECCCchhccCCchh
Confidence 3443221 125566666665532210110 111335566666666665556554443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=4.7e-18 Score=175.83 Aligned_cols=200 Identities=20% Similarity=0.197 Sum_probs=145.3
Q ss_pred CCcceEEEEeCCCCcc-ccCccc--cCCCCCceeecCCCCCCccchhhhcc-----CCccEEeecCcCccccccccccCc
Q 038658 190 KLQRLRVFSLCGYWIS-ELPDSI--GDLRYLRYLNLSGTQIRTLPESVNKL-----YNLHTLSLEGCRGLRKLCAGMGNL 261 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~-~lp~~~--~~l~~Lr~L~L~~~~i~~lp~~i~~L-----~~L~~L~l~~~~~~~~lp~~i~~L 261 (831)
.+++|++|++++|.++ .+|..+ +.+++|++|++++|.++.+|..++.+ ++|++|++++|......|..++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 6889999999999987 568776 88999999999999998888888887 899999999987555555788999
Q ss_pred ccccccccCCCCCccc--ccCCC--CCccccccccceEecCCCCCcchhhhccccccCeeeEcc---cccccccCCCCcc
Q 038658 262 IKLHHLNNSNTDSLEE--MPLGI--GKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISK---LENAQLDGKKNLK 334 (831)
Q Consensus 262 ~~L~~L~l~~~~~~~~--~p~~~--~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~---l~~~~l~~~~~L~ 334 (831)
++|++|++++|...+. +|..+ +.+++|++|... .+.+.. +....+..+++|+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~---------------------~N~l~~~~~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR---------------------NAGMETPSGVCSALAAARVQLQ 231 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECT---------------------TSCCCCHHHHHHHHHHTTCCCS
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECC---------------------CCcCcchHHHHHHHHhcCCCCC
Confidence 9999999999985543 33344 777888877221 111111 1112334567888
Q ss_pred eEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCC
Q 038658 335 VLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLP 414 (831)
Q Consensus 335 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 414 (831)
.|++++|...... ....+..+++|+.|++++|.+..+|.++. ++|+.|++++|.+.+. |.+..++
T Consensus 232 ~L~Ls~N~l~~~~----------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~-p~~~~l~ 296 (312)
T 1wwl_A 232 GLDLSHNSLRDAA----------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRN-PSPDELP 296 (312)
T ss_dssp EEECTTSCCCSSC----------CCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSC-CCTTTSC
T ss_pred EEECCCCcCCccc----------chhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCC-hhHhhCC
Confidence 8888777654321 11234456788888888888888887663 6888888888887655 5577888
Q ss_pred CcceEEecccc
Q 038658 415 SLKHLAVRRMS 425 (831)
Q Consensus 415 ~L~~L~L~~~~ 425 (831)
+|+.|++++++
T Consensus 297 ~L~~L~L~~N~ 307 (312)
T 1wwl_A 297 QVGNLSLKGNP 307 (312)
T ss_dssp EEEEEECTTCT
T ss_pred CCCEEeccCCC
Confidence 88888887753
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=5.3e-17 Score=165.86 Aligned_cols=194 Identities=21% Similarity=0.187 Sum_probs=129.5
Q ss_pred EEEEeCCCCccccCccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccCcccccccccCCCC
Q 038658 195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTD 273 (831)
Q Consensus 195 ~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 273 (831)
++++.+++.++.+|..+ .++|++|++++|.++.+| ..+.++++|++|++++|......|..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 68899999999998765 479999999999999887 568999999999999987555557889999999999999997
Q ss_pred Ccccc-cCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhh
Q 038658 274 SLEEM-PLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREA 352 (831)
Q Consensus 274 ~~~~~-p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 352 (831)
.++.+ |..++.+++|++|.. . ...+..+....+.++++|++|++++|.....
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l--------------------~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------ 144 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHL--------------------D-RCGLQELGPGLFRGLAALQYLYLQDNALQAL------ 144 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEEC--------------------T-TSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------
T ss_pred CccccCHHHhcCCcCCCEEEC--------------------C-CCcCCEECHhHhhCCcCCCEEECCCCccccc------
Confidence 45555 666888888888821 1 1122233334455556666666655544321
Q ss_pred hhHHhhhcCCCCCCCccEEEEeeecCCCCCcc-CCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccc
Q 038658 353 ETQKGVLDMLKPHKNLEQFFISGYGGTKFPIW-LGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRM 424 (831)
Q Consensus 353 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~ 424 (831)
....+..+++|+.|++++|.+..+|.. +.. +++|+.|++++|.+.+..| .+..+++|+.|+++++
T Consensus 145 -----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 145 -----PDDTFRDLGNLTHLFLHGNRISSVPERAFRG--LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -----CHhHhccCCCccEEECCCCcccccCHHHhcC--ccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 112344455666666666655555442 222 5556666666665554433 4555555565555553
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=5.8e-19 Score=201.45 Aligned_cols=160 Identities=15% Similarity=0.187 Sum_probs=98.8
Q ss_pred CCCCCccEEEEeeecCC----CCCc-c-------CC--CCCCCceeEEEEecCCCCCCCC-CCC-CCCCcceEEeccccC
Q 038658 363 KPHKNLEQFFISGYGGT----KFPI-W-------LG--DSSFSNLVTLKFEDCGMCTTLP-SVG-QLPSLKHLAVRRMSR 426 (831)
Q Consensus 363 ~~~~~L~~L~l~~~~~~----~~p~-~-------~~--~~~~~~L~~L~l~~~~~~~~~~-~l~-~l~~L~~L~L~~~~~ 426 (831)
..+++|+.|+++++... ..|. | +. ...+++|++|++++|.+....+ .+. .+++|++|++.+|..
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 34578999999986521 1121 1 10 0136799999999987654333 333 578999999998865
Q ss_pred ceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCc-Cccc----CCCCCCCcccEEE
Q 038658 427 VRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCS-KLKG----TFPEHLPALEMLV 501 (831)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~----~~p~~l~~L~~L~ 501 (831)
+...+.... ...+++|++|++.++. +........+.....+++|++|++++|. .+.. .+...+++|+.|+
T Consensus 143 ~~~~~l~~~----~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 143 FSTDGLAAI----AATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK 217 (594)
T ss_dssp EEHHHHHHH----HHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHH----HHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEe
Confidence 544211111 1138899999998865 2221111111113467899999999875 1210 1112468999999
Q ss_pred EccccCcc---ccCCCCCccceEEEcCCC
Q 038658 502 IGGCEELL---VSITSLPALSKLEIGGCK 527 (831)
Q Consensus 502 l~~~~~l~---~~~~~l~~L~~L~l~~~~ 527 (831)
+++|..+. ..+..+++|++|.+..+.
T Consensus 218 L~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 218 LNRAVPLEKLATLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp CCTTSCHHHHHHHHHHCTTCSEEECSBCC
T ss_pred cCCCCcHHHHHHHHhcCCcceEccccccc
Confidence 99885433 334568889999987765
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=2.7e-18 Score=178.04 Aligned_cols=247 Identities=13% Similarity=0.077 Sum_probs=177.7
Q ss_pred ccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccC
Q 038658 159 YNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLY 238 (831)
Q Consensus 159 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 238 (831)
..+++|+.|.+.+ +.+....+..+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| ..+
T Consensus 31 ~~~~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~ 99 (317)
T 3o53_A 31 QSAWNVKELDLSG------NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGP 99 (317)
T ss_dssp TTGGGCSEEECTT------SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECT
T ss_pred ccCCCCCEEECcC------CccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCC
Confidence 3466888885543 34444445566699999999999999987764 889999999999999988776 348
Q ss_pred CccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeee
Q 038658 239 NLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLT 318 (831)
Q Consensus 239 ~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~ 318 (831)
+|++|++++|.. ..++. ..+++|++|++++|.+....|..++.+++|++|.. . .+.
T Consensus 100 ~L~~L~l~~n~l-~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L--------------------s-~N~ 155 (317)
T 3o53_A 100 SIETLHAANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL--------------------K-LNE 155 (317)
T ss_dssp TCCEEECCSSCC-SEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC--------------------T-TSC
T ss_pred CcCEEECCCCcc-CCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEEC--------------------C-CCC
Confidence 999999999864 44443 34788999999999854444556888888888822 1 122
Q ss_pred Ecccccccc-cCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEE
Q 038658 319 ISKLENAQL-DGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLK 397 (831)
Q Consensus 319 i~~l~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~ 397 (831)
+..+....+ ..+++|+.|++++|.... ......+++|+.|++++|.+..+|..+.. +++|+.|+
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--l~~L~~L~ 220 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYD-------------VKGQVVFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWIS 220 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCE-------------EECCCCCTTCCEEECCSSCCCEECGGGGG--GTTCSEEE
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCcc-------------cccccccccCCEEECCCCcCCcchhhhcc--cCcccEEE
Confidence 222222333 356889999997776532 12334578999999999999988887654 89999999
Q ss_pred EecCCCCCCCCCCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeecccccccccc
Q 038658 398 FEDCGMCTTLPSVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDW 460 (831)
Q Consensus 398 l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 460 (831)
+++|.+....+.+..+++|+.|++++++........+.+ .+++|+.|.+.++..+...
T Consensus 221 L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~-----~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS-----KNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHH-----TCHHHHHHHHHHHHHHHSS
T ss_pred CcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHh-----ccccceEEECCCchhccCC
Confidence 999988754447889999999999987654122222222 2788888888876655544
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=4.1e-17 Score=165.78 Aligned_cols=203 Identities=19% Similarity=0.100 Sum_probs=131.7
Q ss_pred cceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 192 QRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
+.|++|++++|.++.++. .|.++++|++|++++|.++.++. .+.++++|++|++++|......|..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 357778888887777743 67777888888888887776654 6777788888888877644444456777788888888
Q ss_pred CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccc-cccccCCCCcceEEEEeecCCCCCC
Q 038658 270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLE-NAQLDGKKNLKVLMLRWTNSTDGSS 348 (831)
Q Consensus 270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~-~~~l~~~~~L~~L~l~~~~~~~~~~ 348 (831)
++|......+..++++++|++|... .+.+..+. ...+.++++|+.|++++|.......
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~---------------------~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVA---------------------HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECC---------------------SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCccccCchhcccCCCCCEEECc---------------------CCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 7777333333357777777777221 11111211 2345566777777777665432200
Q ss_pred hhhhhhHHhhhcCCCCCCCcc-EEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEecccc
Q 038658 349 LREAETQKGVLDMLKPHKNLE-QFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 349 ~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~ 425 (831)
..+..+..++.+. .|++++|.+..++..... ..+|+.|++++|.+....+ .+..+++|+.|++++++
T Consensus 167 --------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 167 --------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp --------GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred --------HHhhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 0111122223333 788888888887766554 4589999999998876555 46889999999998764
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=1.8e-16 Score=161.45 Aligned_cols=174 Identities=21% Similarity=0.180 Sum_probs=97.0
Q ss_pred cceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658 192 QRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS 270 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 270 (831)
+.+++|++++|.++.+ |..|..+++|++|++++|.++.+|.. +.+++|++|++++|. +..+|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECC
Confidence 3555566666655554 34555556666666666655555443 555556666665543 44555555555566666665
Q ss_pred CCCCccccc-CCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658 271 NTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL 349 (831)
Q Consensus 271 ~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~ 349 (831)
+|. +..+| ..++.+++|++ |++++|.....
T Consensus 109 ~N~-l~~l~~~~~~~l~~L~~---------------------------------------------L~L~~N~l~~~--- 139 (290)
T 1p9a_G 109 FNR-LTSLPLGALRGLGELQE---------------------------------------------LYLKGNELKTL--- 139 (290)
T ss_dssp SSC-CCCCCSSTTTTCTTCCE---------------------------------------------EECTTSCCCCC---
T ss_pred CCc-CcccCHHHHcCCCCCCE---------------------------------------------EECCCCCCCcc---
Confidence 555 33333 22444444444 44433333211
Q ss_pred hhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658 350 REAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 425 (831)
....+..+++|+.|++++|.+..+|..... .+++|+.|++++|.+....+.+...++|+.+++.+++
T Consensus 140 --------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 140 --------PPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --------CTTTTTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred --------ChhhcccccCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 122344566777777777777766654432 3677777777777766444456666677777777654
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=3.8e-16 Score=157.85 Aligned_cols=175 Identities=23% Similarity=0.292 Sum_probs=97.4
Q ss_pred cceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccchh-hhccCCccEEeecCcCcccccc-ccccCcccccccc
Q 038658 192 QRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPES-VNKLYNLHTLSLEGCRGLRKLC-AGMGNLIKLHHLN 268 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~ 268 (831)
+.+++|++++|.++.+| ..|.++++|++|++++|.++.+|.. +.++++|++|++++|. +..+| ..+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEE
Confidence 34566666666666553 3556666666666666666655543 3556666666666654 33333 3345666666666
Q ss_pred cCCCCCccccc-CCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCC
Q 038658 269 NSNTDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGS 347 (831)
Q Consensus 269 l~~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~ 347 (831)
+++|. +..+| ..++.+++| +.|++++|.....
T Consensus 116 l~~n~-l~~~~~~~~~~l~~L---------------------------------------------~~L~Ls~n~l~~~- 148 (270)
T 2o6q_A 116 LDRNQ-LKSLPPRVFDSLTKL---------------------------------------------TYLSLGYNELQSL- 148 (270)
T ss_dssp CCSSC-CCCCCTTTTTTCTTC---------------------------------------------CEEECCSSCCCCC-
T ss_pred CCCCc-cCeeCHHHhCcCcCC---------------------------------------------CEEECCCCcCCcc-
Confidence 66665 22222 224444444 4444444433211
Q ss_pred ChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEecccc
Q 038658 348 SLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~ 425 (831)
....+..+++|+.|++++|.+..+|..... .+++|+.|++++|.+....+ .+..+++|+.|++++++
T Consensus 149 ----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 149 ----------PKGVFDKLTSLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----------CHhHccCCcccceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 112245566777777777776666554221 26777777777777665444 46667777777777653
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=2.3e-16 Score=160.59 Aligned_cols=197 Identities=20% Similarity=0.168 Sum_probs=143.8
Q ss_pred CeeEEEEEccccCccccccccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCC
Q 038658 138 NLRHLSCICGKYDGVKRFEDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYL 217 (831)
Q Consensus 138 ~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~L 217 (831)
.++.+.+..+....+. ..+ .++++.|.+. .+.+....+..+..+++|++|++++|.++.++.. +.+++|
T Consensus 11 ~l~~l~~~~~~l~~ip--~~~--~~~l~~L~L~------~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L 79 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALP--PDL--PKDTTILHLS------ENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVL 79 (290)
T ss_dssp TCCEEECTTSCCSSCC--SCC--CTTCCEEECT------TSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTC
T ss_pred CccEEECCCCCCCcCC--CCC--CCCCCEEEcC------CCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcC
Confidence 4556655544443322 111 2578888554 3445544456666999999999999999998654 899999
Q ss_pred ceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCC-CCCccccccccceEe
Q 038658 218 RYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTLCNFVV 296 (831)
Q Consensus 218 r~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~ 296 (831)
++|++++|.++.+|..+..+++|++|++++|......|..+..+++|++|++++|. +..+|.+ +..+++|+.|
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L----- 153 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKL----- 153 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE-----
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEE-----
Confidence 99999999999999999999999999999987444344669999999999999998 5556654 5666666666
Q ss_pred cCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeee
Q 038658 297 GKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGY 376 (831)
Q Consensus 297 ~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 376 (831)
+++.|..... ....+..+++|+.|++++|
T Consensus 154 ----------------------------------------~L~~N~l~~l-----------~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 154 ----------------------------------------SLANNNLTEL-----------PAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp ----------------------------------------ECTTSCCSCC-----------CTTTTTTCTTCCEEECCSS
T ss_pred ----------------------------------------ECCCCcCCcc-----------CHHHhcCcCCCCEEECCCC
Confidence 2222222111 1123456778888888888
Q ss_pred cCCCCCccCCCCCCCceeEEEEecCCCC
Q 038658 377 GGTKFPIWLGDSSFSNLVTLKFEDCGMC 404 (831)
Q Consensus 377 ~~~~~p~~~~~~~~~~L~~L~l~~~~~~ 404 (831)
.+..+|.++.. ..+|+.+++.+|.+.
T Consensus 183 ~l~~ip~~~~~--~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 183 SLYTIPKGFFG--SHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCCTTTTT--TCCCSEEECCSCCBC
T ss_pred cCCccChhhcc--cccCCeEEeCCCCcc
Confidence 88888888775 678999999988753
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=3.2e-18 Score=177.12 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=41.6
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCC--ccchhhh-------ccCCccEEeecCcCccccccccc--
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIR--TLPESVN-------KLYNLHTLSLEGCRGLRKLCAGM-- 258 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~--~lp~~i~-------~L~~L~~L~l~~~~~~~~lp~~i-- 258 (831)
..++|+.|++++|.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|...+.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 344455555555555 455444332 555555555553 2444443 45555555555554444455543
Q ss_pred cCcccccccccCCCC
Q 038658 259 GNLIKLHHLNNSNTD 273 (831)
Q Consensus 259 ~~L~~L~~L~l~~~~ 273 (831)
+.+++|++|++++|.
T Consensus 118 ~~l~~L~~L~Ls~N~ 132 (312)
T 1wwl_A 118 ATGPDLNILNLRNVS 132 (312)
T ss_dssp CCSCCCSEEEEESCB
T ss_pred hcCCCccEEEccCCC
Confidence 555555555555555
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=2.4e-16 Score=162.31 Aligned_cols=190 Identities=19% Similarity=0.265 Sum_probs=104.2
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
.+++|++|++++|.+..+| .+..+++|++|++++|.+..+|. +..+++|++|++++|. +..+| .++.+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 3445555555555555554 35555555555555555555554 5555555555555544 33333 3555555555555
Q ss_pred CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658 270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL 349 (831)
Q Consensus 270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~ 349 (831)
++|. +..+|. ++.+++|++|... .+.+..+.. +..+++|+.|+++.|.....
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~---------------------~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--- 166 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLD---------------------LNQITNISP--LAGLTNLQYLSIGNAQVSDL--- 166 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECC---------------------SSCCCCCGG--GGGCTTCCEEECCSSCCCCC---
T ss_pred CCCC-CCCchh-hcCCCCCCEEECC---------------------CCccCcCcc--ccCCCCccEEEccCCcCCCC---
Confidence 5555 333332 4445555444110 001111111 33345556666655543221
Q ss_pred hhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658 350 REAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 425 (831)
..+..+++|+.|++++|.+..++. +. .+++|+.|++++|.+.+.. .+..+++|+.|++++++
T Consensus 167 ----------~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 167 ----------TPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp ----------GGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred ----------hhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence 115566777788887777776665 22 3678888888888775443 46777888888887754
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=3.4e-16 Score=158.31 Aligned_cols=175 Identities=21% Similarity=0.221 Sum_probs=99.5
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
.+++|+.|++++|.++.++ .++.+++|++|++++|.++.++ .++++++|++|++++|......|..++.+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 5666777777777766654 4667777777777777776653 6677777777777776533333334677777777777
Q ss_pred CCCCCcccccCC-CCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCC
Q 038658 270 SNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSS 348 (831)
Q Consensus 270 ~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~ 348 (831)
++|. +..+|.. ++.+++|++| ++++|.....
T Consensus 117 ~~n~-l~~~~~~~~~~l~~L~~L---------------------------------------------~L~~n~l~~~-- 148 (272)
T 3rfs_A 117 VENQ-LQSLPDGVFDKLTNLTYL---------------------------------------------NLAHNQLQSL-- 148 (272)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEE---------------------------------------------ECCSSCCCCC--
T ss_pred CCCc-CCccCHHHhccCCCCCEE---------------------------------------------ECCCCccCcc--
Confidence 7776 3333322 4444444444 2212211100
Q ss_pred hhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccc
Q 038658 349 LREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRM 424 (831)
Q Consensus 349 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~ 424 (831)
....+..+++|+.|++++|.+..+|..... .+++|+.|++++|.+.+..+ .++.+++|+.|+++++
T Consensus 149 ---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 149 ---------PKGVFDKLTNLTELDLSYNQLQSLPEGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp ---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ---------CHHHhccCccCCEEECCCCCcCccCHHHhc-CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 111233445555555555555555443211 25667777777776665444 3566666666666654
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=4.5e-16 Score=154.24 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=72.6
Q ss_pred ceEEEEeCCCCccccCc-cccCCCCCceeecCCCC-CCccch-hhhccCCccEEeecCcCcccccc-ccccCcccccccc
Q 038658 193 RLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQ-IRTLPE-SVNKLYNLHTLSLEGCRGLRKLC-AGMGNLIKLHHLN 268 (831)
Q Consensus 193 ~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~ 268 (831)
.|++|++++|.++.+|. .|+.+++|++|++++|. ++.+|. .+.++++|++|++++|..+..+| ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78899999999888854 78889999999999986 888875 67888999999998833455555 4578888899999
Q ss_pred cCCCCCcccccCCCCCccccc
Q 038658 269 NSNTDSLEEMPLGIGKLTCLQ 289 (831)
Q Consensus 269 l~~~~~~~~~p~~~~~L~~L~ 289 (831)
+++|. +..+|. ++.+++|+
T Consensus 112 l~~n~-l~~lp~-~~~l~~L~ 130 (239)
T 2xwt_C 112 IFNTG-LKMFPD-LTKVYSTD 130 (239)
T ss_dssp EEEEC-CCSCCC-CTTCCBCC
T ss_pred CCCCC-Cccccc-cccccccc
Confidence 88887 555664 54444443
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1.4e-16 Score=175.02 Aligned_cols=241 Identities=14% Similarity=0.116 Sum_probs=125.2
Q ss_pred CcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 191 LQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 191 l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
+++|++|+|++|.++.+ |..|+.+++|++|+|++|.++.+++ ++.+++|++|++++|. +..+|. .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEEC
Confidence 34666666666666655 3556666666666666666665443 6666666666666653 333332 256666666
Q ss_pred CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658 270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL 349 (831)
Q Consensus 270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~ 349 (831)
++|. +..+|. ..+++|+.|.. . .+.+..+....+..+++|+.|++++|.....
T Consensus 107 ~~N~-l~~~~~--~~l~~L~~L~L--------------------~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--- 159 (487)
T 3oja_A 107 ANNN-ISRVSC--SRGQGKKNIYL--------------------A-NNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--- 159 (487)
T ss_dssp CSSC-CCCEEE--CCCSSCEEEEC--------------------C-SSCCCSGGGBCGGGGSSEEEEECTTSCCCEE---
T ss_pred cCCc-CCCCCc--cccCCCCEEEC--------------------C-CCCCCCCCchhhcCCCCCCEEECCCCCCCCc---
Confidence 6665 333322 12344444411 1 2222233333444555566666655543221
Q ss_pred hhhhhHHhhhcCCC-CCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEeccccCce
Q 038658 350 REAETQKGVLDMLK-PHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMSRVR 428 (831)
Q Consensus 350 ~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~ 428 (831)
.+..+. .+++|+.|++++|.+..+|.... +++|+.|++++|.+.+..|.+..+++|+.|+++++. +.
T Consensus 160 --------~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~ 227 (487)
T 3oja_A 160 --------NFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LV 227 (487)
T ss_dssp --------EGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CC
T ss_pred --------ChHHHhhhCCcccEEecCCCcccccccccc---CCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-Cc
Confidence 112222 34666666666666665544332 566777777776666555556666677777776643 33
Q ss_pred eeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCc
Q 038658 429 RLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKL 486 (831)
Q Consensus 429 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 486 (831)
.++..+ ..+++|+.|++.+.+-.... .+..+..++.|+.+.+..+..+
T Consensus 228 ~lp~~l------~~l~~L~~L~l~~N~l~c~~----~~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 228 LIEKAL------RFSQNLEHFDLRGNGFHCGT----LRDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp EECTTC------CCCTTCCEEECTTCCBCHHH----HHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhh------ccCCCCCEEEcCCCCCcCcc----hHHHHHhCCCCcEEeccccccc
Confidence 333221 22566666666653321111 1111345667777766543333
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=6.8e-16 Score=156.75 Aligned_cols=94 Identities=20% Similarity=0.174 Sum_probs=76.4
Q ss_pred EEEeCCCCccccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCcccccccccCCCCC
Q 038658 196 VFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDS 274 (831)
Q Consensus 196 ~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~ 274 (831)
+.+..+..+..+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|......+..++++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45566667888888775 689999999999998875 889999999999999864444455799999999999999984
Q ss_pred cccccCCCCCccccccc
Q 038658 275 LEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 275 ~~~~p~~~~~L~~L~~L 291 (831)
....|..++++++|++|
T Consensus 89 ~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKL 105 (276)
T ss_dssp CEECTTTTTTCTTCCEE
T ss_pred CccChhhhcCCccccEE
Confidence 44444668888888887
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=2.1e-16 Score=173.62 Aligned_cols=217 Identities=14% Similarity=0.079 Sum_probs=148.7
Q ss_pred CCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCc
Q 038658 161 IQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNL 240 (831)
Q Consensus 161 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 240 (831)
+++|+.|.+.+ +.+....|..+..+++|++|+|++|.++.++. ++.+++|++|+|++|.++.+|.. ++|
T Consensus 33 ~~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L 101 (487)
T 3oja_A 33 AWNVKELDLSG------NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSI 101 (487)
T ss_dssp GGGCCEEECCS------SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTC
T ss_pred CCCccEEEeeC------CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCc
Confidence 44778875543 34444444556688888888888888876654 78888888888888888777643 788
Q ss_pred cEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEc
Q 038658 241 HTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTIS 320 (831)
Q Consensus 241 ~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~ 320 (831)
++|++++|... .+|. ..+++|+.|++++|.+.+..|..++.+++|+.|.. . .+.+.
T Consensus 102 ~~L~L~~N~l~-~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L--------------------s-~N~l~ 157 (487)
T 3oja_A 102 ETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL--------------------K-LNEID 157 (487)
T ss_dssp CEEECCSSCCC-CEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC--------------------T-TSCCC
T ss_pred CEEECcCCcCC-CCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC--------------------C-CCCCC
Confidence 88888887643 3332 24677888888888855555667788888887721 1 22222
Q ss_pred cccccccc-CCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEe
Q 038658 321 KLENAQLD-GKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFE 399 (831)
Q Consensus 321 ~l~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~ 399 (831)
......+. .+++|+.|++++|..... .....+++|+.|++++|.+..+|..+.. +++|+.|+++
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~L~~L~Ls 222 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYNFIYDV-------------KGQVVFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLR 222 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEE-------------ECCCCCTTCCEEECCSSCCCEECGGGGG--GTTCSEEECT
T ss_pred CcChHHHhhhCCcccEEecCCCccccc-------------cccccCCCCCEEECCCCCCCCCCHhHcC--CCCccEEEec
Confidence 32333343 567888888877765321 2233577888888888888877776654 7888888888
Q ss_pred cCCCCCCCCCCCCCCCcceEEeccccCc
Q 038658 400 DCGMCTTLPSVGQLPSLKHLAVRRMSRV 427 (831)
Q Consensus 400 ~~~~~~~~~~l~~l~~L~~L~L~~~~~l 427 (831)
+|.+.+..+.++.+++|+.|++++++..
T Consensus 223 ~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 223 NNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 8887754446778888888888876543
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.5e-15 Score=153.38 Aligned_cols=179 Identities=20% Similarity=0.218 Sum_probs=130.5
Q ss_pred CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCcc-ccCCCCCceeecCCCCCCccch-hhhccCC
Q 038658 162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDS-IGDLRYLRYLNLSGTQIRTLPE-SVNKLYN 239 (831)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~ 239 (831)
++++.|.+.+ +.+....+..+..+++|++|++++|.++.+|.. |..+++|++|++++|.++.+|. .+..+++
T Consensus 37 ~~l~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQS------NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110 (270)
T ss_dssp TTCSEEECCS------SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSS
T ss_pred CCCCEEECcC------CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccC
Confidence 5688885543 333332233556999999999999999999755 5899999999999999998875 5689999
Q ss_pred ccEEeecCcCccccccccccCcccccccccCCCCCcccccCC-CCCccccccccceEecCCCCCcchhhhccccccCeee
Q 038658 240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLT 318 (831)
Q Consensus 240 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~ 318 (831)
|++|++++|......|..++.+++|++|++++|. +..+|.. ++.+++|+.|
T Consensus 111 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L--------------------------- 162 (270)
T 2o6q_A 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKEL--------------------------- 162 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE---------------------------
T ss_pred CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCccccee---------------------------
Confidence 9999999987555455668999999999999998 5566654 6667766666
Q ss_pred EcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEE
Q 038658 319 ISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKF 398 (831)
Q Consensus 319 i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l 398 (831)
+++.|..... ....+..+++|+.|++++|.+..+|..... .+++|+.|++
T Consensus 163 ------------------~L~~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l 212 (270)
T 2o6q_A 163 ------------------RLYNNQLKRV-----------PEGAFDKLTELKTLKLDNNQLKRVPEGAFD-SLEKLKMLQL 212 (270)
T ss_dssp ------------------ECCSSCCSCC-----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEEC
T ss_pred ------------------EecCCcCcEe-----------ChhHhccCCCcCEEECCCCcCCcCCHHHhc-cccCCCEEEe
Confidence 2222222111 112355567788888888887777765332 3788999999
Q ss_pred ecCCCC
Q 038658 399 EDCGMC 404 (831)
Q Consensus 399 ~~~~~~ 404 (831)
++|.+.
T Consensus 213 ~~N~~~ 218 (270)
T 2o6q_A 213 QENPWD 218 (270)
T ss_dssp CSSCBC
T ss_pred cCCCee
Confidence 988754
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=5.3e-16 Score=156.87 Aligned_cols=196 Identities=20% Similarity=0.248 Sum_probs=128.8
Q ss_pred ccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchh-hh
Q 038658 157 DLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPES-VN 235 (831)
Q Consensus 157 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~-i~ 235 (831)
....+++|+.|.+.+.. + ...+.+..+++|++|++++|.++.++ .++.+++|++|++++|.++.+|.. ++
T Consensus 36 ~~~~l~~L~~L~l~~~~------i--~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSD------I--KSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp CHHHHTTCCEEECTTSC------C--CCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred ccccccceeeeeeCCCC------c--ccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhc
Confidence 34556777777554322 1 12345668889999999999988864 788899999999999999887654 68
Q ss_pred ccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCC-CCCccccccccceEecCCCCCcchhhhcccccc
Q 038658 236 KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLR 314 (831)
Q Consensus 236 ~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 314 (831)
++++|++|++++|......|..++.+++|++|++++|. +..+|.. ++.+++|+.|
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L----------------------- 162 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTEL----------------------- 162 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE-----------------------
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEE-----------------------
Confidence 89999999999987444444457889999999999997 4455543 5666666666
Q ss_pred CeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCcee
Q 038658 315 GTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLV 394 (831)
Q Consensus 315 ~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~ 394 (831)
++++|..... ....+..+++|+.|++++|.+..++..... .+++|+
T Consensus 163 ----------------------~l~~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~ 208 (272)
T 3rfs_A 163 ----------------------DLSYNQLQSL-----------PEGVFDKLTQLKDLRLYQNQLKSVPDGVFD-RLTSLQ 208 (272)
T ss_dssp ----------------------ECCSSCCCCC-----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCC
T ss_pred ----------------------ECCCCCcCcc-----------CHHHhcCCccCCEEECCCCcCCccCHHHHh-CCcCCC
Confidence 2222222111 112244556666666666666665543221 267777
Q ss_pred EEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658 395 TLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 395 ~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 425 (831)
.|++++|.+. +.+++|+.+.+..+.
T Consensus 209 ~L~l~~N~~~------~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 209 YIWLHDNPWD------CTCPGIRYLSEWINK 233 (272)
T ss_dssp EEECCSSCBC------CCTTTTHHHHHHHHH
T ss_pred EEEccCCCcc------ccCcHHHHHHHHHHh
Confidence 7777777554 334566666665544
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=1.4e-14 Score=152.31 Aligned_cols=236 Identities=18% Similarity=0.210 Sum_probs=174.4
Q ss_pred cEEeEcCCcCcccCCCCCC-CcccEEEEccccC--cc-ccCCCCCccceEEEcCCCCccccccccccCCCCceeeccccc
Q 038658 476 RELEVIGCSKLKGTFPEHL-PALEMLVIGGCEE--LL-VSITSLPALSKLEIGGCKKVVWRSETDHLGSQNSVVCRDTLN 551 (831)
Q Consensus 476 ~~L~l~~c~~l~~~~p~~l-~~L~~L~l~~~~~--l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (831)
++++.++ ++++ .+|..+ +++++|++++|.. ++ ..+..+++|++|++++|......
T Consensus 12 ~~v~C~~-~~Lt-~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i------------------- 70 (350)
T 4ay9_X 12 RVFLCQE-SKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI------------------- 70 (350)
T ss_dssp TEEEEES-TTCC-SCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEE-------------------
T ss_pred CEEEecC-CCCC-ccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCcc-------------------
Confidence 4566555 6787 888765 5799999999873 33 35678999999999999855422
Q ss_pred hhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEe
Q 038658 552 QVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLL 631 (831)
Q Consensus 552 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l 631 (831)
....+..++++.++.+.++.+++. ++...+..+++|++|+++++ ++..++...+... .++..|++
T Consensus 71 ----~~~~f~~L~~l~~~l~~~~N~l~~---l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~-------~~l~~l~l 135 (350)
T 4ay9_X 71 ----EADVFSNLPKLHEIRIEKANNLLY---INPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHS-------LQKVLLDI 135 (350)
T ss_dssp ----CTTSBCSCTTCCEEEEEEETTCCE---ECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCB-------SSCEEEEE
T ss_pred ----ChhHhhcchhhhhhhcccCCcccc---cCchhhhhcccccccccccc-ccccCCchhhccc-------chhhhhhh
Confidence 112345677888777766666665 56667789999999999984 6666654322111 35778888
Q ss_pred ccCCCCccccc-ccCCC-CCCCeEEEecCCCCccccCCCC-CCCccEEEEecCCCCcccccc-cccCCCCCcCeEEEccC
Q 038658 632 NDCKGLVKLPQ-SLLSL-SSLREIEIYNCSSFVSFPEVAL-PSKVRSISIHRCDALKSLPEA-WMCDANLSLEILTISRC 707 (831)
Q Consensus 632 ~~~~~~~~l~~-~l~~l-~~L~~L~L~~~~~l~~l~~~~~-~~~L~~L~l~~c~~l~~l~~~-~~~~~l~~L~~L~l~~c 707 (831)
.++..+..++. .+..+ ..++.|++++| .++.++...+ ..+|++|++.+++.++.+|.. +.. +++|++|+++++
T Consensus 136 ~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~--l~~L~~LdLs~N 212 (350)
T 4ay9_X 136 QDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG--ASGPVILDISRT 212 (350)
T ss_dssp ESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT--EECCSEEECTTS
T ss_pred ccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhcc--CcccchhhcCCC
Confidence 88777777764 44554 46888999998 7888887666 678999999998999999865 444 899999999996
Q ss_pred CCcceeccCCCCCCCceEEEecCCCCCccccccCccCCcccccCccccceEEEec
Q 038658 708 HSLTYIAEVQLPPSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIES 762 (831)
Q Consensus 708 ~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~ 762 (831)
.++.+|... +.+|++|.+.+|++++.+ |. +.. +++ |+.+++.+
T Consensus 213 -~l~~lp~~~-~~~L~~L~~l~~~~l~~l--P~-l~~-----l~~--L~~l~l~~ 255 (350)
T 4ay9_X 213 -RIHSLPSYG-LENLKKLRARSTYNLKKL--PT-LEK-----LVA--LMEASLTY 255 (350)
T ss_dssp -CCCCCCSSS-CTTCCEEECTTCTTCCCC--CC-TTT-----CCS--CCEEECSC
T ss_pred -CcCccChhh-hccchHhhhccCCCcCcC--CC-chh-----CcC--hhhCcCCC
Confidence 688888654 568999999999999988 42 444 666 88888865
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=2.7e-15 Score=154.39 Aligned_cols=195 Identities=19% Similarity=0.228 Sum_probs=140.2
Q ss_pred cccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhcc
Q 038658 158 LYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKL 237 (831)
Q Consensus 158 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L 237 (831)
..++++|+.|.+.+.. +. .+ +.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .+..+
T Consensus 37 ~~~l~~L~~L~l~~~~------i~-~l-~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l 106 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG------VT-TI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGL 106 (308)
T ss_dssp HHHHHTCCEEECTTSC------CC-CC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred HHHcCCcCEEEeeCCC------cc-Cc-hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCC
Confidence 3456677777554322 11 22 345678889999999998888876 888899999999999888875 68888
Q ss_pred CCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCee
Q 038658 238 YNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTL 317 (831)
Q Consensus 238 ~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l 317 (831)
++|++|++++|. +..+|. +..+++|++|++++|. +..++. ++.+++|+.|... .+
T Consensus 107 ~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~---------------------~n 161 (308)
T 1h6u_A 107 QSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIG---------------------NA 161 (308)
T ss_dssp TTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECC---------------------SS
T ss_pred CCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEcc---------------------CC
Confidence 999999999876 555654 8888999999998887 555554 7777777777221 11
Q ss_pred eEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEE
Q 038658 318 TISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLK 397 (831)
Q Consensus 318 ~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~ 397 (831)
.+..+.. +..+++|+.|++++|..... ..+..+++|+.|++++|.+..++. +. .+++|+.|+
T Consensus 162 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~ 223 (308)
T 1h6u_A 162 QVSDLTP--LANLSKLTTLKADDNKISDI-------------SPLASLPNLIEVHLKNNQISDVSP-LA--NTSNLFIVT 223 (308)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCC-------------GGGGGCTTCCEEECTTSCCCBCGG-GT--TCTTCCEEE
T ss_pred cCCCChh--hcCCCCCCEEECCCCccCcC-------------hhhcCCCCCCEEEccCCccCcccc-cc--CCCCCCEEE
Confidence 2222222 56677888888877765432 115667899999999999888774 33 389999999
Q ss_pred EecCCCCC
Q 038658 398 FEDCGMCT 405 (831)
Q Consensus 398 l~~~~~~~ 405 (831)
+++|.+..
T Consensus 224 l~~N~i~~ 231 (308)
T 1h6u_A 224 LTNQTITN 231 (308)
T ss_dssp EEEEEEEC
T ss_pred ccCCeeec
Confidence 99987643
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=1.7e-14 Score=151.67 Aligned_cols=241 Identities=17% Similarity=0.156 Sum_probs=147.9
Q ss_pred cEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcc
Q 038658 369 EQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLE 447 (831)
Q Consensus 369 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~ 447 (831)
+.++.++++.+.+|..+ .+++++|++++|.+....+ .+.++++|++|+|+++...+.++...
T Consensus 12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~------------- 74 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV------------- 74 (350)
T ss_dssp TEEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS-------------
T ss_pred CEEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH-------------
Confidence 45666777778888765 3678889999888765444 57888888888888876444443211
Q ss_pred eeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCCCCCcccEEEEccccCccccCCCCCccceEEEcCCC
Q 038658 448 TLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPEHLPALEMLVIGGCEELLVSITSLPALSKLEIGGCK 527 (831)
Q Consensus 448 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~ 527 (831)
+..+++++++.+.++++++ .+|. ..+..+++|+.|++++|.
T Consensus 75 ---------------------f~~L~~l~~~l~~~~N~l~-~l~~-----------------~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 75 ---------------------FSNLPKLHEIRIEKANNLL-YINP-----------------EAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp ---------------------BCSCTTCCEEEEEEETTCC-EECT-----------------TSBCCCTTCCEEEEEEEC
T ss_pred ---------------------hhcchhhhhhhcccCCccc-ccCc-----------------hhhhhccccccccccccc
Confidence 2345555555555555665 3321 123344555555555544
Q ss_pred CccccccccccCCCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccC-CCccEEeeecCCCcc
Q 038658 528 KVVWRSETDHLGSQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDI-SSLKRLTIGWCPTLQ 606 (831)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~ 606 (831)
...... .......++..+++.++..++. .+...+..+ ..++.|++++ ++++
T Consensus 116 l~~~~~------------------------~~~~~~~~l~~l~l~~~~~i~~---l~~~~f~~~~~~l~~L~L~~-N~i~ 167 (350)
T 4ay9_X 116 IKHLPD------------------------VHKIHSLQKVLLDIQDNINIHT---IERNSFVGLSFESVILWLNK-NGIQ 167 (350)
T ss_dssp CSSCCC------------------------CTTCCBSSCEEEEEESCTTCCE---ECTTSSTTSBSSCEEEECCS-SCCC
T ss_pred cccCCc------------------------hhhcccchhhhhhhcccccccc---ccccchhhcchhhhhhcccc-cccc
Confidence 221110 0111233455555555554443 333333343 4577788877 5777
Q ss_pred cchhhhhhhHhhhhcccCCccEEEeccCCCCccccc-ccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCc
Q 038658 607 SLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQ-SLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALK 685 (831)
Q Consensus 607 ~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~ 685 (831)
.++...+.. .+|++|++.+++.++.+|. .+..+++|++|++++| .++.+|.. .+.+|+.|.+.+|..++
T Consensus 168 ~i~~~~f~~--------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~-~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 168 EIHNSAFNG--------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY-GLENLKKLRARSTYNLK 237 (350)
T ss_dssp EECTTSSTT--------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS-SCTTCCEEECTTCTTCC
T ss_pred CCChhhccc--------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh-hhccchHhhhccCCCcC
Confidence 776554332 2588888887777777775 4677888888888887 67777753 36778888888888888
Q ss_pred ccccccccCCCCCcCeEEEcc
Q 038658 686 SLPEAWMCDANLSLEILTISR 706 (831)
Q Consensus 686 ~l~~~~~~~~l~~L~~L~l~~ 706 (831)
.+|. +.. +++|+.+++.+
T Consensus 238 ~lP~-l~~--l~~L~~l~l~~ 255 (350)
T 4ay9_X 238 KLPT-LEK--LVALMEASLTY 255 (350)
T ss_dssp CCCC-TTT--CCSCCEEECSC
T ss_pred cCCC-chh--CcChhhCcCCC
Confidence 8774 333 77888887754
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.5e-14 Score=143.21 Aligned_cols=175 Identities=15% Similarity=0.128 Sum_probs=90.5
Q ss_pred CCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCccccc
Q 038658 563 LPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLPQ 642 (831)
Q Consensus 563 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~ 642 (831)
+++|++|+++++..++. .+...+..+++|++|++++|+.++.++...+... ++|++|++++|... .+|.
T Consensus 54 l~~L~~L~l~~n~~l~~---i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l-------~~L~~L~l~~n~l~-~lp~ 122 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQ---LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL-------PLLKFLGIFNTGLK-MFPD 122 (239)
T ss_dssp CTTCCEEEEECCSSCCE---ECTTTEESCTTCCEEEEEEETTCCEECTTSEECC-------TTCCEEEEEEECCC-SCCC
T ss_pred CCCCcEEeCCCCCCcce---eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC-------CCCCEEeCCCCCCc-cccc
Confidence 44444444444432222 3333345556666666665555555543332222 35666666665533 3554
Q ss_pred ccCCCCCCC---eEEEecCCCCccccCCCC--CCCcc-EEEEecCCCCcccccccccCCCCCcCeEEEccCCCcceeccC
Q 038658 643 SLLSLSSLR---EIEIYNCSSFVSFPEVAL--PSKVR-SISIHRCDALKSLPEAWMCDANLSLEILTISRCHSLTYIAEV 716 (831)
Q Consensus 643 ~l~~l~~L~---~L~L~~~~~l~~l~~~~~--~~~L~-~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 716 (831)
+..+++|+ +|++++|+.++.++...+ +++|+ +|++++|. ++.+|..... .++|++|++++|+.++.++..
T Consensus 123 -~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~--~~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 123 -LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFN--GTKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp -CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTT--TCEEEEEECTTCTTCCEECTT
T ss_pred -cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcC--CCCCCEEEcCCCCCcccCCHH
Confidence 55555555 666666655555554433 56666 66666643 4455544433 356666666666556666543
Q ss_pred C--CC-CCCceEEEecCCCCCccccccCccCCcccccCccccceEEEecCC
Q 038658 717 Q--LP-PSLKNVVIRNCDNVRTLTVEEGIQSSSSRRYTSSLLEHLHIESCP 764 (831)
Q Consensus 717 ~--~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~l~~~~L~~L~i~~c~ 764 (831)
. .. ++|++|++++ ++++.+ +.. . ++. |++|++.++.
T Consensus 199 ~~~~l~~~L~~L~l~~-N~l~~l--~~~--~-----~~~--L~~L~l~~~~ 237 (239)
T 2xwt_C 199 AFGGVYSGPSLLDVSQ-TSVTAL--PSK--G-----LEH--LKELIARNTW 237 (239)
T ss_dssp TTTTCSBCCSEEECTT-CCCCCC--CCT--T-----CTT--CSEEECTTC-
T ss_pred HhhccccCCcEEECCC-CccccC--Chh--H-----hcc--CceeeccCcc
Confidence 2 23 5666666665 455555 322 1 333 6666666553
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=156.76 Aligned_cols=199 Identities=19% Similarity=0.132 Sum_probs=137.1
Q ss_pred CCcceEEEEeCCCCccc-cCccc--cCCCCCceeecCCCCCCcc-c----hhhhccCCccEEeecCcCccccccccccCc
Q 038658 190 KLQRLRVFSLCGYWISE-LPDSI--GDLRYLRYLNLSGTQIRTL-P----ESVNKLYNLHTLSLEGCRGLRKLCAGMGNL 261 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~-lp~~~--~~l~~Lr~L~L~~~~i~~l-p----~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L 261 (831)
.+++|++|++++|.+.. .|..+ +.+++|++|++++|.+... | ..+..+++|++|++++|......|..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 45679999999999874 47777 8899999999999998842 2 345679999999999988655566779999
Q ss_pred ccccccccCCCCCccc--cc--CCCCCccccccccceEecCCCCCcchhhhccccccCeeeEccccc---ccccCCCCcc
Q 038658 262 IKLHHLNNSNTDSLEE--MP--LGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLEN---AQLDGKKNLK 334 (831)
Q Consensus 262 ~~L~~L~l~~~~~~~~--~p--~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~---~~l~~~~~L~ 334 (831)
++|++|++++|...+. ++ ..++.+++|++|.... +.+..+.. ..+..+++|+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~---------------------N~l~~l~~~~~~l~~~l~~L~ 227 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN---------------------TGMETPTGVCAALAAAGVQPH 227 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS---------------------SCCCCHHHHHHHHHHHTCCCS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC---------------------CCCCchHHHHHHHHhcCCCCC
Confidence 9999999999985432 33 2247788888883211 11111111 1234556777
Q ss_pred eEEEEeecCCCCCChhhhhhHHhhhcCCCC---CCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCC
Q 038658 335 VLMLRWTNSTDGSSLREAETQKGVLDMLKP---HKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVG 411 (831)
Q Consensus 335 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 411 (831)
+|++++|..... .+..+.. +++|+.|++++|.+..+|.++ +++|+.|++++|.+.+. |.+.
T Consensus 228 ~L~Ls~N~l~~~-----------~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~~-~~~~ 291 (310)
T 4glp_A 228 SLDLSHNSLRAT-----------VNPSAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNRA-PQPD 291 (310)
T ss_dssp SEECTTSCCCCC-----------CCSCCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCSC-CCTT
T ss_pred EEECCCCCCCcc-----------chhhHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCCC-chhh
Confidence 888877765432 1222222 367888888888877777665 36788888888877643 4456
Q ss_pred CCCCcceEEecccc
Q 038658 412 QLPSLKHLAVRRMS 425 (831)
Q Consensus 412 ~l~~L~~L~L~~~~ 425 (831)
.+++|+.|++++++
T Consensus 292 ~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 292 ELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCSCEECSSTT
T ss_pred hCCCccEEECcCCC
Confidence 77777888777653
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=4.6e-17 Score=170.99 Aligned_cols=205 Identities=21% Similarity=0.218 Sum_probs=131.9
Q ss_pred ccCC--cceEEEEeCCCCccccCccccCCCCCceeecCCCCCCc--cchhhhccCCccEEeecCcCccccccccccCccc
Q 038658 188 LFKL--QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRT--LPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIK 263 (831)
Q Consensus 188 ~~~l--~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~ 263 (831)
+..+ +.+++|++++|.+...+..+..+++|++|++++|.+.. +|..+..+++|++|++++|......|..++.+++
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 3355 78999999999988776667789999999999998873 7888899999999999998755567788888999
Q ss_pred ccccccCCCCCcc--cccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEee
Q 038658 264 LHHLNNSNTDSLE--EMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWT 341 (831)
Q Consensus 264 L~~L~l~~~~~~~--~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~ 341 (831)
|++|++++|..++ .+|..++++++| ++|++++|
T Consensus 144 L~~L~L~~~~~l~~~~l~~~~~~~~~L---------------------------------------------~~L~l~~~ 178 (336)
T 2ast_B 144 LVRLNLSGCSGFSEFALQTLLSSCSRL---------------------------------------------DELNLSWC 178 (336)
T ss_dssp CSEEECTTCBSCCHHHHHHHHHHCTTC---------------------------------------------CEEECCCC
T ss_pred CCEEECCCCCCCCHHHHHHHHhcCCCC---------------------------------------------CEEcCCCC
Confidence 9999999884233 234334444444 44444444
Q ss_pred -cCCCCCChhhhhhHHhhhcCCCCCC-CccEEEEeeec--C--CCCCccCCCCCCCceeEEEEecCC-CCCC-CCCCCCC
Q 038658 342 -NSTDGSSLREAETQKGVLDMLKPHK-NLEQFFISGYG--G--TKFPIWLGDSSFSNLVTLKFEDCG-MCTT-LPSVGQL 413 (831)
Q Consensus 342 -~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~--~~~p~~~~~~~~~~L~~L~l~~~~-~~~~-~~~l~~l 413 (831)
.... ......+..++ +|+.|++++|. . ..+|..+.. +++|+.|++++|. +... ++.+..+
T Consensus 179 ~~l~~----------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~--~~~L~~L~l~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 179 FDFTE----------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR--CPNLVHLDLSDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp TTCCH----------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH--CTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred CCcCh----------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh--CCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence 2210 00112233445 67777777663 2 223443332 6778888888877 3322 3366777
Q ss_pred CCcceEEeccccCceeeCccccCCCCCCCCCCcceeecccc
Q 038658 414 PSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFENL 454 (831)
Q Consensus 414 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 454 (831)
++|++|++++|..+...+...+ ..+++|+.|++.++
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLEL-----GEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGG-----GGCTTCCEEECTTS
T ss_pred CCCCEeeCCCCCCCCHHHHHHH-----hcCCCCCEEeccCc
Confidence 8888888887753322211111 22666666666654
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=2.4e-14 Score=142.85 Aligned_cols=172 Identities=18% Similarity=0.177 Sum_probs=90.6
Q ss_pred ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccCcccccccccCC
Q 038658 193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSN 271 (831)
Q Consensus 193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~ 271 (831)
..++++++++.++.+|..+. .+|++|++++|.+..++ ..+.++++|++|++++|......|..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34556666666666665554 45666666666666553 3456666666666666543333344456666666666666
Q ss_pred CCCccccc-CCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChh
Q 038658 272 TDSLEEMP-LGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLR 350 (831)
Q Consensus 272 ~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 350 (831)
|. +..+| ..++.+++|++| ++++|.....
T Consensus 93 n~-l~~~~~~~~~~l~~L~~L---------------------------------------------~L~~N~l~~~---- 122 (251)
T 3m19_A 93 NQ-LASLPLGVFDHLTQLDKL---------------------------------------------YLGGNQLKSL---- 122 (251)
T ss_dssp SC-CCCCCTTTTTTCTTCCEE---------------------------------------------ECCSSCCCCC----
T ss_pred Cc-ccccChhHhcccCCCCEE---------------------------------------------EcCCCcCCCc----
Confidence 65 33333 224444444444 1211111100
Q ss_pred hhhhHHhhhcCCCCCCCccEEEEeeecCCCCCc-cCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEecccc
Q 038658 351 EAETQKGVLDMLKPHKNLEQFFISGYGGTKFPI-WLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 351 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~ 425 (831)
....+..+++|+.|++++|.+..+|. .+.. +++|+.|++++|.+....+ .+..+++|+.|++++++
T Consensus 123 -------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 123 -------PSGVFDRLTKLKELRLNTNQLQSIPAGAFDK--LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred -------ChhHhccCCcccEEECcCCcCCccCHHHcCc--CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 01113334555555555655555554 2332 5667777777766665444 46666777777776653
No 90
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.51 E-value=1.4e-15 Score=169.50 Aligned_cols=100 Identities=15% Similarity=0.256 Sum_probs=83.5
Q ss_pred CCCchHHHHhccccCChhhhhHhh-----------hhCCCCCCCccCHHHHHHHHHHc--CCcCCCCCCCchHHHHHHHH
Q 038658 17 RCDIIPALRVSYYYLSAPLKQCFA-----------YCSLFPKDYEFEEEEIILLWSAV--GFLDHRKSENPCEDLGRKFF 83 (831)
Q Consensus 17 ~~~i~~~L~lSY~~L~~~~k~cfl-----------~~~~fp~~~~i~~~~Li~~wi~~--G~i~~~~~~~~~~~~~~~~~ 83 (831)
.++|.++|++||++||.++|.||+ |||+||+|+.|+ ++.|+|+ ||+...+....++++++ +|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l 434 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL 434 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence 357999999999999999999999 999999999999 8999999 99987654667888888 99
Q ss_pred HHHHhcccceeecC-CcccEeecHHHHHHHHHHhcCcEE
Q 038658 84 QELRARSFFQQSSN-NKSLFVMHDLINDLAHWAAGEIYF 121 (831)
Q Consensus 84 ~~Lv~~~ll~~~~~-~~~~~~mHdlv~d~a~~i~~~~~~ 121 (831)
++|+++||++..+. ....|+|||+|||+|++++++++.
T Consensus 435 ~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 435 KRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999998653 356799999999999999987653
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=1.2e-13 Score=137.60 Aligned_cols=175 Identities=16% Similarity=0.165 Sum_probs=132.0
Q ss_pred CCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccccce
Q 038658 215 RYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNF 294 (831)
Q Consensus 215 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~ 294 (831)
...++++++++.++.+|..+. .+|+.|++++|......|..++++++|++|++++|.+.+..|..++.+++|++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--- 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL--- 88 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE---
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE---
Confidence 467899999999999998776 699999999987655566679999999999999998444444446777766666
Q ss_pred EecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhhhhHHhhhcCCCCCCCccEEEEe
Q 038658 295 VVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREAETQKGVLDMLKPHKNLEQFFIS 374 (831)
Q Consensus 295 ~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 374 (831)
+++.|..... ....+..+++|+.|+++
T Consensus 89 ------------------------------------------~L~~n~l~~~-----------~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 89 ------------------------------------------GLANNQLASL-----------PLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp ------------------------------------------ECTTSCCCCC-----------CTTTTTTCTTCCEEECC
T ss_pred ------------------------------------------ECCCCccccc-----------ChhHhcccCCCCEEEcC
Confidence 2222222111 22345677899999999
Q ss_pred eecCCCCCccCCCCCCCceeEEEEecCCCCCCCC-CCCCCCCcceEEeccccCceeeCccccCCCCCCCCCCcceeeccc
Q 038658 375 GYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP-SVGQLPSLKHLAVRRMSRVRRLGSEFYGNDTPIPFPCLETLRFEN 453 (831)
Q Consensus 375 ~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 453 (831)
+|.+..+|..... .+++|+.|++++|.+....+ .++.+++|+.|+++++. +..++...+ ..+++|+.|++.+
T Consensus 116 ~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-----~~l~~L~~L~l~~ 188 (251)
T 3m19_A 116 GNQLKSLPSGVFD-RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAF-----DRLGKLQTITLFG 188 (251)
T ss_dssp SSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT-----TTCTTCCEEECCS
T ss_pred CCcCCCcChhHhc-cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHH-----hCCCCCCEEEeeC
Confidence 9999988875432 38999999999999887666 68999999999999864 444443222 3388999999987
Q ss_pred c
Q 038658 454 L 454 (831)
Q Consensus 454 ~ 454 (831)
.
T Consensus 189 N 189 (251)
T 3m19_A 189 N 189 (251)
T ss_dssp C
T ss_pred C
Confidence 4
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=3.1e-14 Score=135.99 Aligned_cols=100 Identities=16% Similarity=0.242 Sum_probs=76.7
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
.+++|++|++++|.++.+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++.+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 6778889999999888887 6888899999999998777664 7888899999999988765557778888888999998
Q ss_pred CCCCCcccccCCCCCccccccc
Q 038658 270 SNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 270 ~~~~~~~~~p~~~~~L~~L~~L 291 (831)
++|.+....|..++.+++|++|
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEE
T ss_pred cCCccCcHhHHHHhhCCCCCEE
Confidence 8887444444444444444443
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=2.1e-13 Score=140.77 Aligned_cols=201 Identities=16% Similarity=0.139 Sum_probs=126.4
Q ss_pred CCcccEEeEcCCcCcccCCCC-----CCCcccEEEEccccCcc-------ccCCCCCccceEEEcCCCCccccccccccC
Q 038658 472 FPKLRELEVIGCSKLKGTFPE-----HLPALEMLVIGGCEELL-------VSITSLPALSKLEIGGCKKVVWRSETDHLG 539 (831)
Q Consensus 472 ~~~L~~L~l~~c~~l~~~~p~-----~l~~L~~L~l~~~~~l~-------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 539 (831)
+++|++|++++| .+.+..|. .+++|+.|++++|.... ..+..+++|++|++++|.....
T Consensus 90 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-------- 160 (310)
T 4glp_A 90 YSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-------- 160 (310)
T ss_dssp HSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC--------
T ss_pred cCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh--------
Confidence 345777777774 45444443 35667777777666321 2334577888888888774321
Q ss_pred CCCceeeccccchhhccCCCCCCCCCCcEEEEccCCCcchhcccCCcccccCCCccEEeeecCCCcccchhhhhhhHhhh
Q 038658 540 SQNSVVCRDTLNQVLLAGPLKPRLPKLEELEISNIKNETYIWKRHNGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQL 619 (831)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l 619 (831)
.......+++|++|+++++................+++|++|++++| +++.++........
T Consensus 161 ----------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~-- 221 (310)
T 4glp_A 161 ----------------SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA-- 221 (310)
T ss_dssp ----------------CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH--
T ss_pred ----------------hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh--
Confidence 11234467888888888887433211122333467888999999885 66655432111111
Q ss_pred hcccCCccEEEeccCCCCcccccccCCC---CCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCC
Q 038658 620 CELSCRLEYLLLNDCKGLVKLPQSLLSL---SSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDAN 696 (831)
Q Consensus 620 ~~~~~~L~~L~l~~~~~~~~l~~~l~~l---~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l 696 (831)
-.++|++|++++|......|..+..+ ++|++|++++| .++.+|... +++|++|++++|. ++.+|. +.. +
T Consensus 222 --~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N~-l~~~~~-~~~--l 293 (310)
T 4glp_A 222 --AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSNR-LNRAPQ-PDE--L 293 (310)
T ss_dssp --HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSCC-CCSCCC-TTS--C
T ss_pred --cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCCc-CCCCch-hhh--C
Confidence 12578999999988766667666665 68999999888 566777543 4788888888854 555543 333 7
Q ss_pred CCcCeEEEccCC
Q 038658 697 LSLEILTISRCH 708 (831)
Q Consensus 697 ~~L~~L~l~~c~ 708 (831)
++|+.|++++++
T Consensus 294 ~~L~~L~L~~N~ 305 (310)
T 4glp_A 294 PEVDNLTLDGNP 305 (310)
T ss_dssp CCCSCEECSSTT
T ss_pred CCccEEECcCCC
Confidence 778888887764
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=5.6e-14 Score=143.15 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=105.2
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
.+++|++|++++|.+..++ .+..+++|++|++++|.++.++. +.++++|++|++++|. +..+|. ++.+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEEC
Confidence 5667777788777777775 36777788888888887777766 7777888888887765 444543 777777888888
Q ss_pred CCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658 270 SNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL 349 (831)
Q Consensus 270 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~ 349 (831)
++|. +..++ .++.+++|+.| ++++|....
T Consensus 120 ~~n~-i~~~~-~l~~l~~L~~L---------------------------------------------~l~~n~l~~---- 148 (291)
T 1h6t_A 120 EHNG-ISDIN-GLVHLPQLESL---------------------------------------------YLGNNKITD---- 148 (291)
T ss_dssp TTSC-CCCCG-GGGGCTTCCEE---------------------------------------------ECCSSCCCC----
T ss_pred CCCc-CCCCh-hhcCCCCCCEE---------------------------------------------EccCCcCCc----
Confidence 7776 33332 34444444444 332222211
Q ss_pred hhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658 350 REAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 425 (831)
...+..+++|+.|++++|.+..++. +. .+++|+.|++++|.+.. ++.+..+++|+.|++++++
T Consensus 149 ---------~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 149 ---------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ---------CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEE
T ss_pred ---------chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCc
Confidence 0123344566666666666665554 33 26777777777776543 4556677777777777653
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=1.9e-15 Score=161.61 Aligned_cols=112 Identities=12% Similarity=0.123 Sum_probs=65.3
Q ss_pred ccccCCcceEEccccccCCCcccccccc----cccccCCcceEEEEeCCCCccc----cCccc-------cCCCCCceee
Q 038658 157 DLYNIQHLRTFLPVCLSNSSQGFLAHSI----LPKLFKLQRLRVFSLCGYWISE----LPDSI-------GDLRYLRYLN 221 (831)
Q Consensus 157 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~----~~~~~~l~~L~~L~L~~~~i~~----lp~~~-------~~l~~Lr~L~ 221 (831)
.+..+++|+.|.+.+ +.+.... +..+..+++|++|+|++|.+.. +|..+ ..+++|++|+
T Consensus 27 ~l~~~~~L~~L~L~~------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSG------NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHHHCSCCCEEECTT------SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHhcCCCccEEECCC------CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 345566677764433 2333322 2224467777777777764432 23333 5677777777
Q ss_pred cCCCCCCc-----cchhhhccCCccEEeecCcCcccc----ccccccCc---------ccccccccCCCCC
Q 038658 222 LSGTQIRT-----LPESVNKLYNLHTLSLEGCRGLRK----LCAGMGNL---------IKLHHLNNSNTDS 274 (831)
Q Consensus 222 L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~~----lp~~i~~L---------~~L~~L~l~~~~~ 274 (831)
|++|.+.. +|..+..+++|++|++++|..... ++..+..+ ++|++|++++|.+
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 77777764 566777777777777777654322 22233333 6777777777763
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=2.7e-15 Score=160.55 Aligned_cols=92 Identities=23% Similarity=0.236 Sum_probs=74.2
Q ss_pred cccccccCCcceEEEEeCCCCccc-----cCccccCCCCCceeecCCCCCC----ccchhh-------hccCCccEEeec
Q 038658 183 SILPKLFKLQRLRVFSLCGYWISE-----LPDSIGDLRYLRYLNLSGTQIR----TLPESV-------NKLYNLHTLSLE 246 (831)
Q Consensus 183 ~~~~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~l~ 246 (831)
.++..+..+++|++|+|++|.++. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 345556688899999999999874 3455788999999999998655 345544 788999999999
Q ss_pred CcCccc----cccccccCcccccccccCCCCC
Q 038658 247 GCRGLR----KLCAGMGNLIKLHHLNNSNTDS 274 (831)
Q Consensus 247 ~~~~~~----~lp~~i~~L~~L~~L~l~~~~~ 274 (831)
+|.... .+|..+..+++|++|++++|.+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 987554 4788899999999999999984
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=1.2e-14 Score=153.61 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=67.6
Q ss_pred ccccccccccccCCcceEEEEeCCCCccccC-----ccccCCC-CCceeecCCCCCCcc-chhhhcc-----CCccEEee
Q 038658 178 GFLAHSILPKLFKLQRLRVFSLCGYWISELP-----DSIGDLR-YLRYLNLSGTQIRTL-PESVNKL-----YNLHTLSL 245 (831)
Q Consensus 178 ~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-----~~~~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~l 245 (831)
+.+.+.+|..+...++|++|+|++|.++..+ ..+..++ +|++|+|++|.++.. +..+..+ ++|++|++
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 3444444444445566888899888888764 5667777 888888888888755 5566665 88888888
Q ss_pred cCcCcccccccccc----Cc-ccccccccCCCC
Q 038658 246 EGCRGLRKLCAGMG----NL-IKLHHLNNSNTD 273 (831)
Q Consensus 246 ~~~~~~~~lp~~i~----~L-~~L~~L~l~~~~ 273 (831)
++|......+..+. .+ ++|++|++++|.
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 88874444444443 33 788888888887
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=3.8e-13 Score=136.93 Aligned_cols=121 Identities=21% Similarity=0.353 Sum_probs=89.0
Q ss_pred ccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhc
Q 038658 157 DLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK 236 (831)
Q Consensus 157 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~ 236 (831)
...++++|+.|.+.+.. +. .+ +.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+|. +..
T Consensus 41 ~~~~l~~L~~L~l~~~~------i~-~~-~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~ 110 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSD------IK-SV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKD 110 (291)
T ss_dssp CHHHHHTCCEEECTTSC------CC-CC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTT
T ss_pred chhhcCcccEEEccCCC------cc-cC-hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hcc
Confidence 34456777777554322 21 22 345688899999999999988866 8899999999999999888764 889
Q ss_pred cCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCccccccc
Q 038658 237 LYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 237 L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
+++|++|++++|. +..+ ..+..+++|++|++++|. +..+ ..++.+++|+.|
T Consensus 111 l~~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L 161 (291)
T 1h6t_A 111 LKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTL 161 (291)
T ss_dssp CTTCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEE
T ss_pred CCCCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEE
Confidence 9999999999876 5555 458889999999999887 4444 345555555555
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=4.5e-13 Score=147.96 Aligned_cols=176 Identities=18% Similarity=0.186 Sum_probs=98.2
Q ss_pred ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCC
Q 038658 193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNT 272 (831)
Q Consensus 193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~ 272 (831)
+|++|++++|.++.+|..+. ++|++|+|++|.|+.+| ..+++|++|++++|. +..+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCC
Confidence 56666666666666655442 55666666666666665 345666666666654 333555 444 6666666666
Q ss_pred CCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChhhh
Q 038658 273 DSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLREA 352 (831)
Q Consensus 273 ~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 352 (831)
. ++.+|. .+++|+.|... .+.+..+.. .+++|+.|++++|.....
T Consensus 131 ~-l~~lp~---~l~~L~~L~Ls---------------------~N~l~~lp~----~l~~L~~L~Ls~N~L~~l------ 175 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYINAD---------------------NNQLTMLPE----LPTSLEVLSVRNNQLTFL------ 175 (571)
T ss_dssp C-CSCCCC---CCTTCCEEECC---------------------SSCCSCCCC----CCTTCCEEECCSSCCSCC------
T ss_pred c-CCCCCC---cCccccEEeCC---------------------CCccCcCCC----cCCCcCEEECCCCCCCCc------
Confidence 5 333554 34444444110 111111111 234566666666554321
Q ss_pred hhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCce-------eEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658 353 ETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNL-------VTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 353 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L-------~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 425 (831)
+. +. ++|+.|++++|.+..+|. +. .+| +.|++++|.+....+.+..+++|+.|++++|+
T Consensus 176 ------p~-l~--~~L~~L~Ls~N~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 176 ------PE-LP--ESLEALDVSTNLLESLPA-VP----VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp ------CC-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred ------ch-hh--CCCCEEECcCCCCCchhh-HH----HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 11 22 678888888888777776 43 255 88888888776433356668888888887765
Q ss_pred C
Q 038658 426 R 426 (831)
Q Consensus 426 ~ 426 (831)
.
T Consensus 242 l 242 (571)
T 3cvr_A 242 L 242 (571)
T ss_dssp C
T ss_pred C
Confidence 3
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=1.9e-13 Score=152.86 Aligned_cols=96 Identities=22% Similarity=0.325 Sum_probs=54.9
Q ss_pred CCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 190 KLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
.+++|+.|++++|.+..+| .+..+++|++|+|++|.+..+|. +..+++|+.|+|++|. +..+| .+..+++|++|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence 4555666666666666654 45666666666666666666654 6666666666666654 33343 4666666666666
Q ss_pred CCCCCcccccCCCCCccccccc
Q 038658 270 SNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 270 ~~~~~~~~~p~~~~~L~~L~~L 291 (831)
++|. +..+| .++.+++|+.|
T Consensus 117 s~N~-l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 117 EHNG-ISDIN-GLVHLPQLESL 136 (605)
T ss_dssp TTSC-CCCCG-GGGGCTTCSEE
T ss_pred cCCC-CCCCc-cccCCCccCEE
Confidence 6665 33332 24444444444
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=1.2e-12 Score=127.09 Aligned_cols=83 Identities=16% Similarity=0.256 Sum_probs=57.5
Q ss_pred EEEEeCCCCccccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCcccccccccCCCC
Q 038658 195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTD 273 (831)
Q Consensus 195 ~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 273 (831)
+.++++++.++.+|..+. .+|++|++++|.|+.+|. .+..+++|++|++++|......|..|..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456777777777776654 577777777777777654 66777777777777766444446667777777777777776
Q ss_pred CcccccC
Q 038658 274 SLEEMPL 280 (831)
Q Consensus 274 ~~~~~p~ 280 (831)
+..+|.
T Consensus 92 -l~~l~~ 97 (220)
T 2v9t_B 92 -ITELPK 97 (220)
T ss_dssp -CCCCCT
T ss_pred -CCccCH
Confidence 444543
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=2.8e-13 Score=130.80 Aligned_cols=98 Identities=30% Similarity=0.442 Sum_probs=63.1
Q ss_pred cceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCccchh-hhccCCccEEeecCcCccccccc-cccCcccccccc
Q 038658 192 QRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTLPES-VNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLN 268 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~ 268 (831)
++|++|++++|.++.+|. .|..+++|++|++++|+++.+|.. +..+++|++|++++|. +..+|. .++.+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEE
Confidence 467777777777776643 456777777777777777776643 4677777777777765 334443 357777777777
Q ss_pred cCCCCCcccccCC-CCCccccccc
Q 038658 269 NSNTDSLEEMPLG-IGKLTCLQTL 291 (831)
Q Consensus 269 l~~~~~~~~~p~~-~~~L~~L~~L 291 (831)
+++|. +..+|.. ++.+++|++|
T Consensus 107 L~~N~-l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 107 LNTNQ-LQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred cCCCc-CcccCHhHhccCCcCCEE
Confidence 77776 3444432 4444444444
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=1.4e-14 Score=151.93 Aligned_cols=200 Identities=22% Similarity=0.271 Sum_probs=139.9
Q ss_pred CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccc--cCccccCCCCCceeecCCCCCC-ccchhhhccC
Q 038658 162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISE--LPDSIGDLRYLRYLNLSGTQIR-TLPESVNKLY 238 (831)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~ 238 (831)
++++.+.+.+ +.+.. .++.++.+++|++|++++|.+.. +|..+..+++|++|++++|.++ ..|..++.++
T Consensus 70 ~~l~~L~l~~------n~l~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 70 QGVIAFRCPR------SFMDQ-PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142 (336)
T ss_dssp TTCSEEECTT------CEECS-CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred ccceEEEcCC------ccccc-cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence 7788875533 33333 34456789999999999999874 7888899999999999999988 6788999999
Q ss_pred CccEEeecCcCccc--cccccccCcccccccccCCC-CCccc-ccCCCCCcc-ccccccceEecCCCCCcchhhhccccc
Q 038658 239 NLHTLSLEGCRGLR--KLCAGMGNLIKLHHLNNSNT-DSLEE-MPLGIGKLT-CLQTLCNFVVGKDSGSRLRELKLLTHL 313 (831)
Q Consensus 239 ~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~l~~~-~~~~~-~p~~~~~L~-~L~~L~~~~~~~~~~~~~~~l~~L~~L 313 (831)
+|++|++++|..+. .+|..+.++++|++|++++| ..... ++..++.++ +|++
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~----------------------- 199 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ----------------------- 199 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE-----------------------
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE-----------------------
Confidence 99999999995455 37777899999999999999 52221 343344444 4444
Q ss_pred cCeeeEcccccccccCCCCcceEEEEeecC-CCCCChhhhhhHHhhhcCCCCCCCccEEEEeeec-CC-CCCccCCCCCC
Q 038658 314 RGTLTISKLENAQLDGKKNLKVLMLRWTNS-TDGSSLREAETQKGVLDMLKPHKNLEQFFISGYG-GT-KFPIWLGDSSF 390 (831)
Q Consensus 314 ~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~-~~p~~~~~~~~ 390 (831)
|++++|.. .. .......+..+++|+.|++++|. .+ ..+..+.. +
T Consensus 200 ----------------------L~l~~~~~~~~---------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--l 246 (336)
T 2ast_B 200 ----------------------LNLSGYRKNLQ---------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--L 246 (336)
T ss_dssp ----------------------EECCSCGGGSC---------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG--C
T ss_pred ----------------------EEeCCCcccCC---------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC--C
Confidence 44433320 00 01122233456788888888877 33 34445543 7
Q ss_pred CceeEEEEecCCCCCC--CCCCCCCCCcceEEeccc
Q 038658 391 SNLVTLKFEDCGMCTT--LPSVGQLPSLKHLAVRRM 424 (831)
Q Consensus 391 ~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~L~~~ 424 (831)
++|+.|++++|..... +..++.+++|+.|++++|
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 8899999998862211 124677899999999887
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=1.3e-13 Score=138.07 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=37.9
Q ss_pred CCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658 363 KPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 363 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 425 (831)
..+++|+.|++++|.+..++ .+.. +++|+.|++++|.+.+. +.+..+++|+.|+++++.
T Consensus 125 ~~l~~L~~L~Ls~N~i~~~~-~l~~--l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKLKSIV-MLGF--LSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCTTCCEEECTTSCCCBCG-GGGG--CTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred cCcccccEEECCCCcCCCCh-HHcc--CCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 34455566666666655554 2322 67777777777776554 667777888888887753
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=1.8e-12 Score=126.78 Aligned_cols=76 Identities=24% Similarity=0.266 Sum_probs=43.3
Q ss_pred EEEEeCCCCccccCccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccc-cccCcccccccccCCC
Q 038658 195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLNNSNT 272 (831)
Q Consensus 195 ~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~ 272 (831)
+.++.+++.++.+|..+. .+|++|+|++|.|+.+ |..+..+++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC
Confidence 345555666666665443 5666666666666654 4455666666666666654 344443 2456666666666666
Q ss_pred C
Q 038658 273 D 273 (831)
Q Consensus 273 ~ 273 (831)
.
T Consensus 99 ~ 99 (229)
T 3e6j_A 99 Q 99 (229)
T ss_dssp C
T ss_pred c
Confidence 5
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=4.2e-13 Score=148.19 Aligned_cols=174 Identities=20% Similarity=0.203 Sum_probs=116.7
Q ss_pred ccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccc
Q 038658 184 ILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIK 263 (831)
Q Consensus 184 ~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~ 263 (831)
+|..++ ++|++|+|++|.++.+| ..+++|++|++++|.|+.+|. +.+ +|++|++++|. +..+|. .+++
T Consensus 74 lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~ 141 (571)
T 3cvr_A 74 LPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ-LTMLPE---LPAL 141 (571)
T ss_dssp CCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC-CSCCCC---CCTT
T ss_pred cCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc-CCCCCC---cCcc
Confidence 555443 67888888888888877 456888888888888888877 655 88888888875 445776 6778
Q ss_pred ccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecC
Q 038658 264 LHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNS 343 (831)
Q Consensus 264 L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~ 343 (831)
|++|++++|. +..+|. .+++|+.|.. . .+.+..+.. +. ++|+.|+++.|..
T Consensus 142 L~~L~Ls~N~-l~~lp~---~l~~L~~L~L--------------------s-~N~L~~lp~--l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 142 LEYINADNNQ-LTMLPE---LPTSLEVLSV--------------------R-NNQLTFLPE--LP--ESLEALDVSTNLL 192 (571)
T ss_dssp CCEEECCSSC-CSCCCC---CCTTCCEEEC--------------------C-SSCCSCCCC--CC--TTCCEEECCSSCC
T ss_pred ccEEeCCCCc-cCcCCC---cCCCcCEEEC--------------------C-CCCCCCcch--hh--CCCCEEECcCCCC
Confidence 8888888887 555765 4566666621 1 112222222 22 6788888877765
Q ss_pred CCCCChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCC
Q 038658 344 TDGSSLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLP 408 (831)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~ 408 (831)
...+. . . .......+.|+.|++++|.+..+|.++.. +++|+.|++++|.+.+..|
T Consensus 193 ~~lp~--~-~-----~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~--l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 193 ESLPA--V-P-----VRNHHSEETEIFFRCRENRITHIPENILS--LDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp SSCCC--C-C-------------CCEEEECCSSCCCCCCGGGGG--SCTTEEEECCSSSCCHHHH
T ss_pred Cchhh--H-H-----HhhhcccccceEEecCCCcceecCHHHhc--CCCCCEEEeeCCcCCCcCH
Confidence 42210 0 0 00011223349999999999999998876 8999999999999876655
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=3.8e-13 Score=128.38 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=43.4
Q ss_pred cccCCcceEEEEeCCCCccc-cCccccCCCCCceeecCCCCCCc-cchhhhccCCccEEeecCcCccccccccccCcccc
Q 038658 187 KLFKLQRLRVFSLCGYWISE-LPDSIGDLRYLRYLNLSGTQIRT-LPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKL 264 (831)
Q Consensus 187 ~~~~l~~L~~L~L~~~~i~~-lp~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L 264 (831)
.+..+++|++|++++|.++. .|..++.+++|++|++++|.++. .|..++.+++|++|++++|..+..+| .+..+++|
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L 161 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPEL 161 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSC
T ss_pred hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCC
Confidence 33355555555555555543 34445555555555555555542 34445555555555555544344444 35555555
Q ss_pred cccccCCCC
Q 038658 265 HHLNNSNTD 273 (831)
Q Consensus 265 ~~L~l~~~~ 273 (831)
++|++++|.
T Consensus 162 ~~L~l~~n~ 170 (197)
T 4ezg_A 162 KSLNIQFDG 170 (197)
T ss_dssp CEEECTTBC
T ss_pred CEEECCCCC
Confidence 555555554
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=3.2e-13 Score=151.06 Aligned_cols=189 Identities=17% Similarity=0.194 Sum_probs=142.6
Q ss_pred CcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658 191 LQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS 270 (831)
Q Consensus 191 l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 270 (831)
+..+..+.+..+.+..++ .+..+.+|++|++++|.+..+| .+..+++|+.|+|++|. +..+|. +..+++|+.|+++
T Consensus 20 l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECc
Confidence 444555566666666653 3578999999999999999987 69999999999999986 555655 9999999999999
Q ss_pred CCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCChh
Q 038658 271 NTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSLR 350 (831)
Q Consensus 271 ~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 350 (831)
+|. +..+| .++.+++|+.|.... +.+..+ ..+..+++|+.|+++.|.....
T Consensus 96 ~N~-l~~l~-~l~~l~~L~~L~Ls~---------------------N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l---- 146 (605)
T 1m9s_A 96 ENK-IKDLS-SLKDLKKLKSLSLEH---------------------NGISDI--NGLVHLPQLESLYLGNNKITDI---- 146 (605)
T ss_dssp SSC-CCCCT-TSTTCTTCCEEECTT---------------------SCCCCC--GGGGGCTTCSEEECCSSCCCCC----
T ss_pred CCC-CCCCh-hhccCCCCCEEEecC---------------------CCCCCC--ccccCCCccCEEECCCCccCCc----
Confidence 998 55555 688888888883211 111121 2355677888898877765321
Q ss_pred hhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCCCCCCCCCCCCCcceEEecccc
Q 038658 351 EAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMCTTLPSVGQLPSLKHLAVRRMS 425 (831)
Q Consensus 351 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 425 (831)
..+..+++|+.|+|++|.+..++. +.. +++|+.|+|++|.+.. ++.+..+++|+.|+|++|+
T Consensus 147 ---------~~l~~l~~L~~L~Ls~N~l~~~~~-l~~--l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 147 ---------TVLSRLTKLDTLSLEDNQISDIVP-LAG--LTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ---------GGGGSCTTCSEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEE
T ss_pred ---------hhhcccCCCCEEECcCCcCCCchh-hcc--CCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCc
Confidence 346677889999999988887766 443 7899999999987764 4678888999999998764
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=6.6e-13 Score=128.15 Aligned_cols=121 Identities=30% Similarity=0.421 Sum_probs=73.0
Q ss_pred CcceEEccccccCCCccccccccccccc-CCcceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCccchh-hhccC
Q 038658 162 QHLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTLPES-VNKLY 238 (831)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~ 238 (831)
++++.|.+.+ +.+. .+++..+ .+++|++|++++|.++.+|. .|..+++|++|++++|.++.+|.. +.+++
T Consensus 28 ~~l~~L~l~~------n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 100 (208)
T 2o6s_A 28 AQTTYLDLET------NSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100 (208)
T ss_dssp TTCSEEECCS------SCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEcCC------CccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence 4566664433 2232 3344433 67777777777777776654 356777777777777777766643 57777
Q ss_pred CccEEeecCcCccccccc-cccCcccccccccCCCCCcccccCC-CCCccccccc
Q 038658 239 NLHTLSLEGCRGLRKLCA-GMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLQTL 291 (831)
Q Consensus 239 ~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-~~~L~~L~~L 291 (831)
+|++|++++|. +..+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|
T Consensus 101 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 101 QLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred CCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEE
Confidence 77777777765 334443 36777777777777776 3344432 4444444333
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=1.7e-12 Score=126.10 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=62.7
Q ss_pred cceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCcccccccc-ccCcccccccc
Q 038658 192 QRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLN 268 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~ 268 (831)
+.|++|++++|.++.+| ..|..+++|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEE
Confidence 45677777777776664 3566677777777777777655 5566777777777777754 4445444 56677777777
Q ss_pred cCCCCCcccccCCCCCccccccc
Q 038658 269 NSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 269 l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
+++|.+....|..++.+++|+.|
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEE
Confidence 77776333334445555555555
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=1.3e-12 Score=127.93 Aligned_cols=98 Identities=30% Similarity=0.400 Sum_probs=67.8
Q ss_pred cceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccc-cccCcccccccc
Q 038658 192 QRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLN 268 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~ 268 (831)
++|++|+|++|.++.+ |..|..+++|++|+|++|.|..+|. .+..+++|++|++++|. +..+|. .+..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEe
Confidence 5677777777777766 5667777777777777777777764 35777777777777765 444443 356777777777
Q ss_pred cCCCCCcccccCCCCCccccccc
Q 038658 269 NSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 269 l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
+++|. +..+|..++.+++|++|
T Consensus 119 Ls~N~-l~~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 119 MCCNK-LTELPRGIERLTHLTHL 140 (229)
T ss_dssp CCSSC-CCSCCTTGGGCTTCSEE
T ss_pred ccCCc-ccccCcccccCCCCCEE
Confidence 77776 55677666666666666
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=1.9e-12 Score=129.52 Aligned_cols=97 Identities=26% Similarity=0.263 Sum_probs=63.1
Q ss_pred ccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccc
Q 038658 188 LFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL 267 (831)
Q Consensus 188 ~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 267 (831)
+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|. +.++++|++|++++|. +..+|.. .. ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~-~~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGI-PS-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTC-CC-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCcc-cc-CcccEE
Confidence 346667777777777777766 56677777777777777777765 7777777777777764 4445542 23 677777
Q ss_pred ccCCCCCcccccCCCCCccccccc
Q 038658 268 NNSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 268 ~l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
++++|. +..+| .++.+++|+.|
T Consensus 112 ~L~~N~-l~~~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 112 FLDNNE-LRDTD-SLIHLKNLEIL 133 (263)
T ss_dssp ECCSSC-CSBSG-GGTTCTTCCEE
T ss_pred EccCCc-cCCCh-hhcCcccccEE
Confidence 777776 44443 35555555555
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=2.4e-12 Score=124.90 Aligned_cols=98 Identities=16% Similarity=0.069 Sum_probs=52.0
Q ss_pred eEEEEeCCCCccccC--ccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658 194 LRVFSLCGYWISELP--DSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS 270 (831)
Q Consensus 194 L~~L~L~~~~i~~lp--~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 270 (831)
+++|+|++|.++.++ ..|..+++|++|+|++|.|+.+|. .+.++++|++|++++|......|..++.+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 456666666665552 235566666666666666665543 55666666666666654333333345566666666666
Q ss_pred CCCCcccccCCCCCccccccc
Q 038658 271 NTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 271 ~~~~~~~~p~~~~~L~~L~~L 291 (831)
+|.+.+..|..++.+++|++|
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEE
T ss_pred CCcCCeECHhHcCCCccCCEE
Confidence 665333223334444444333
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.33 E-value=1.5e-12 Score=137.24 Aligned_cols=93 Identities=23% Similarity=0.262 Sum_probs=45.7
Q ss_pred EEEeCCCCccccCccccCCCCCceeecCCCCCCccchh-hh-ccCCccEEeecCcCccccccccccCcccccccccCCCC
Q 038658 196 VFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPES-VN-KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTD 273 (831)
Q Consensus 196 ~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 273 (831)
+++++++.++.+|..+. ..+++|+|++|+|+.+|.. +. ++++|++|+|++|......|..+..+++|++|++++|.
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 45555555555555443 2355555555555555433 33 55555555555554222222345555555555555555
Q ss_pred CcccccC-CCCCccccccc
Q 038658 274 SLEEMPL-GIGKLTCLQTL 291 (831)
Q Consensus 274 ~~~~~p~-~~~~L~~L~~L 291 (831)
+..+|. .++.+++|+.|
T Consensus 100 -l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 100 -LHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp -CCEECTTTTTTCTTCCEE
T ss_pred -CCcCCHHHhCCCcCCCEE
Confidence 333332 24444444444
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=5.2e-12 Score=122.59 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=84.3
Q ss_pred cccccccccccc-CCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccc
Q 038658 178 GFLAHSILPKLF-KLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKL 254 (831)
Q Consensus 178 ~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~l 254 (831)
|.+....+..++ .+++|++|+|++|.++.++ ..|..+++|++|+|++|.++.+|. .+..+++|++|++++|......
T Consensus 42 N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 121 (220)
T 2v70_A 42 NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG 121 (220)
T ss_dssp SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC
T ss_pred CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC
Confidence 344443344434 8888888888888888774 478888888888888888887764 4788888888888887755555
Q ss_pred cccccCcccccccccCCCCCcccccCCCCCccccccc
Q 038658 255 CAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 255 p~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
|..+..+++|++|++++|.+.+..|..++.+++|+.|
T Consensus 122 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 7778888888888888887444446667666666665
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=5.7e-12 Score=116.79 Aligned_cols=124 Identities=22% Similarity=0.199 Sum_probs=93.1
Q ss_pred CcceEEccccccCCCccccc-ccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCc-cchhhhccCC
Q 038658 162 QHLRTFLPVCLSNSSQGFLA-HSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRT-LPESVNKLYN 239 (831)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~ 239 (831)
++|+.|.+.+ +.+. +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+.++++
T Consensus 24 ~~L~~L~l~~------n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDN------CKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCS------CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred ccCCEEECCC------CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 5666664433 2233 35555556888889999998888877 778888889999999988886 6777778889
Q ss_pred ccEEeecCcCcccccc--ccccCcccccccccCCCCCcccccC----CCCCccccccccce
Q 038658 240 LHTLSLEGCRGLRKLC--AGMGNLIKLHHLNNSNTDSLEEMPL----GIGKLTCLQTLCNF 294 (831)
Q Consensus 240 L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~~~~L~~L~~L~~~ 294 (831)
|++|++++|. +..+| ..++.+++|++|++++|. +..+|. .+..+++|+.|+..
T Consensus 97 L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 97 LTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp CCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTE
T ss_pred CCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCC
Confidence 9999998875 55555 668888889999998887 555665 57888888888443
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=1.9e-12 Score=120.00 Aligned_cols=100 Identities=24% Similarity=0.307 Sum_probs=85.0
Q ss_pred CCcceEEEEeCCCCcc--ccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccc
Q 038658 190 KLQRLRVFSLCGYWIS--ELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL 267 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~--~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 267 (831)
..++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..++.+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4578999999999998 8898899999999999999999988 889999999999999987655588878889999999
Q ss_pred ccCCCCCccccc--CCCCCccccccc
Q 038658 268 NNSNTDSLEEMP--LGIGKLTCLQTL 291 (831)
Q Consensus 268 ~l~~~~~~~~~p--~~~~~L~~L~~L 291 (831)
++++|. +..+| ..++.+++|++|
T Consensus 101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 101 NLSGNK-LKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp ECBSSS-CCSSGGGGGGSSCSCCCEE
T ss_pred eccCCc-cCcchhHHHHhcCCCCCEE
Confidence 999998 55554 445555555555
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.28 E-value=1.7e-13 Score=144.83 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=72.4
Q ss_pred CcceEEccccccCCCccccccccc----ccccCCc-ceEEEEeCCCCcccc-CccccCC-----CCCceeecCCCCCCcc
Q 038658 162 QHLRTFLPVCLSNSSQGFLAHSIL----PKLFKLQ-RLRVFSLCGYWISEL-PDSIGDL-----RYLRYLNLSGTQIRTL 230 (831)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~i~~l-p~~~~~l-----~~Lr~L~L~~~~i~~l 230 (831)
++|+.|.+.+ +.+....+ ..+..++ +|++|+|++|.++.. +..+..+ ++|++|+|++|.++..
T Consensus 22 ~~L~~L~Ls~------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 22 HGVTSLDLSL------NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp TTCCEEECTT------SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CCceEEEccC------CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 3488885533 33433333 4444777 899999999988765 5555554 8899999999988854
Q ss_pred c-hh----hhcc-CCccEEeecCcCccccccccc----cC-cccccccccCCCCCc
Q 038658 231 P-ES----VNKL-YNLHTLSLEGCRGLRKLCAGM----GN-LIKLHHLNNSNTDSL 275 (831)
Q Consensus 231 p-~~----i~~L-~~L~~L~l~~~~~~~~lp~~i----~~-L~~L~~L~l~~~~~~ 275 (831)
+ .. +..+ ++|++|++++|......+..+ .. .++|++|++++|.+.
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 3 43 3444 889999999987444333333 33 258999999988733
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=3.4e-12 Score=115.62 Aligned_cols=122 Identities=18% Similarity=0.194 Sum_probs=97.0
Q ss_pred CcceEEccccccCCCccccc-ccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCc-cchhhhccCC
Q 038658 162 QHLRTFLPVCLSNSSQGFLA-HSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRT-LPESVNKLYN 239 (831)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~ 239 (831)
++++.|.+.+ +.+. +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++
T Consensus 17 ~~l~~L~l~~------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDN------SRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTT------CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccC------CcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 5666664433 2343 45666666899999999999999888 778999999999999999997 7888888999
Q ss_pred ccEEeecCcCcccccc--ccccCcccccccccCCCCCcccccC----CCCCcccccccc
Q 038658 240 LHTLSLEGCRGLRKLC--AGMGNLIKLHHLNNSNTDSLEEMPL----GIGKLTCLQTLC 292 (831)
Q Consensus 240 L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~~~~L~~L~~L~ 292 (831)
|++|++++|. +..+| ..++.+++|++|++++|. +..+|. .++.+++|+.|+
T Consensus 90 L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 90 LTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred CCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 9999999986 55544 779999999999999997 555654 577888888773
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=1.5e-11 Score=116.33 Aligned_cols=99 Identities=24% Similarity=0.309 Sum_probs=56.1
Q ss_pred cceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658 192 QRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS 270 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 270 (831)
++|++|++++|.++.+|..|..+++|++|+|++|.|+.++ ..+.++++|++|++++|......|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3566666666666666666666666666666666666554 345666666666666655333333446666666666666
Q ss_pred CCCCcccccCC-CCCccccccc
Q 038658 271 NTDSLEEMPLG-IGKLTCLQTL 291 (831)
Q Consensus 271 ~~~~~~~~p~~-~~~L~~L~~L 291 (831)
+|. +..+|.+ +..+++|+.|
T Consensus 111 ~N~-l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 111 GND-ISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEE
T ss_pred CCC-CCeeChhhhhcCccccEE
Confidence 665 3344432 4444444443
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=2.3e-12 Score=116.73 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=87.5
Q ss_pred CCcceEEEEeCCCCcc--ccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCccccccc
Q 038658 190 KLQRLRVFSLCGYWIS--ELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL 267 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~--~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 267 (831)
..++|++|++++|.++ .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..++.+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999998 8899899999999999999999988 789999999999999987555588888889999999
Q ss_pred ccCCCCCccccc--CCCCCccccccc
Q 038658 268 NNSNTDSLEEMP--LGIGKLTCLQTL 291 (831)
Q Consensus 268 ~l~~~~~~~~~p--~~~~~L~~L~~L 291 (831)
++++|. +..+| ..++.+++|++|
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEE
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEE
Confidence 999998 55543 667777777777
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=1.2e-11 Score=117.10 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=52.5
Q ss_pred ceEEEEeCCCCccccCcc--ccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCccccccccccCccccccccc
Q 038658 193 RLRVFSLCGYWISELPDS--IGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNN 269 (831)
Q Consensus 193 ~L~~L~L~~~~i~~lp~~--~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 269 (831)
.|++|++++|.++.++.. |+.+++|++|+|++|.|+.+ |..+.++++|++|++++|......|..++.+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 555566666655555432 55556666666666655544 445555666666666655433333334555566666666
Q ss_pred CCCCCcccccCCCCCccccccc
Q 038658 270 SNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 270 ~~~~~~~~~p~~~~~L~~L~~L 291 (831)
++|.+.+..|..++.+++|++|
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEE
T ss_pred CCCcCCeeCHHHhhcCCCCCEE
Confidence 6555333334444444444444
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=1.4e-11 Score=114.97 Aligned_cols=127 Identities=20% Similarity=0.127 Sum_probs=101.0
Q ss_pred cccccCCcceEEccccccCCCcccccccccccccCCc-ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhh
Q 038658 156 EDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQ-RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESV 234 (831)
Q Consensus 156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i 234 (831)
+.+.++.+|+.|.+.+. .+. .+ +.+..+. +|++|++++|.++.+ ..++.+++|++|++++|.|+.+|+.+
T Consensus 13 ~~~~~~~~L~~L~l~~n------~l~-~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGY------KIP-VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTS------CCC-SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEeeCC------CCc-hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 44566788888866443 232 23 3455444 999999999999988 67899999999999999999998665
Q ss_pred -hccCCccEEeecCcCccccccc--cccCcccccccccCCCCCcccccCC----CCCccccccccc
Q 038658 235 -NKLYNLHTLSLEGCRGLRKLCA--GMGNLIKLHHLNNSNTDSLEEMPLG----IGKLTCLQTLCN 293 (831)
Q Consensus 235 -~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----~~~L~~L~~L~~ 293 (831)
+.+++|++|++++|. +..+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|+.
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCC
Confidence 899999999999976 577776 78899999999999998 5677764 788888888844
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.21 E-value=9.9e-12 Score=131.01 Aligned_cols=105 Identities=22% Similarity=0.141 Sum_probs=77.4
Q ss_pred ccccccCCcceEEEEeCCCCccccCc-ccc-CCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCcccccc-cccc
Q 038658 184 ILPKLFKLQRLRVFSLCGYWISELPD-SIG-DLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLC-AGMG 259 (831)
Q Consensus 184 ~~~~~~~l~~L~~L~L~~~~i~~lp~-~~~-~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp-~~i~ 259 (831)
+|..+. +.+++|+|++|.++.++. .+. .+.+|++|+|++|+|+.+| ..+.++++|++|+|++|. +..+| ..+.
T Consensus 33 iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 109 (361)
T 2xot_A 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFS 109 (361)
T ss_dssp CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTT
T ss_pred cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhC
Confidence 444443 347888999888888754 455 8888999999988888776 468888899999998876 44444 4588
Q ss_pred CcccccccccCCCCCcccccCCCCCccccccc
Q 038658 260 NLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTL 291 (831)
Q Consensus 260 ~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L 291 (831)
.+++|++|++++|.+....|..++.+++|+.|
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 88889999998888444445557777766666
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=3.1e-11 Score=138.71 Aligned_cols=106 Identities=25% Similarity=0.346 Sum_probs=95.3
Q ss_pred cccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccc
Q 038658 185 LPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKL 264 (831)
Q Consensus 185 ~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L 264 (831)
+..+..++.|++|+|++|.+..+|..+..+++|++|+|++|.|+.+|..+++|++|++|+|++|. +..+|..|++|++|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQL 295 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTC
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCC
Confidence 34444999999999999999999988889999999999999999999999999999999999987 55899999999999
Q ss_pred cccccCCCCCcccccCCCCCcccccccc
Q 038658 265 HHLNNSNTDSLEEMPLGIGKLTCLQTLC 292 (831)
Q Consensus 265 ~~L~l~~~~~~~~~p~~~~~L~~L~~L~ 292 (831)
++|+|++|. ++.+|.+|++|++|++|.
T Consensus 296 ~~L~L~~N~-l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 296 KYFYFFDNM-VTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp SEEECCSSC-CCCCCSSTTSCTTCCCEE
T ss_pred CEEECCCCC-CCccChhhhcCCCccEEe
Confidence 999999998 679999999999999983
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=3.9e-11 Score=113.59 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=88.1
Q ss_pred cceEEccccccCCCccccccccccc-ccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccCC
Q 038658 163 HLRTFLPVCLSNSSQGFLAHSILPK-LFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYN 239 (831)
Q Consensus 163 ~Lr~L~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~ 239 (831)
+++.|.+.+ +.+....+.. +..+++|++|+|++|.++.+ |..|..+++|++|+|++|.|+.+|. .+..+++
T Consensus 30 ~l~~L~l~~------n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 103 (192)
T 1w8a_A 30 HTTELLLND------NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ 103 (192)
T ss_dssp TCSEEECCS------CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred CCCEEECCC------CcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence 777875543 3343333333 45899999999999999988 7889999999999999999998765 5899999
Q ss_pred ccEEeecCcCccccccccccCcccccccccCCCCCccc
Q 038658 240 LHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEE 277 (831)
Q Consensus 240 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~ 277 (831)
|++|++++|......|..++.+++|++|++++|.....
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99999999886666788899999999999999985433
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=6.7e-12 Score=144.28 Aligned_cols=122 Identities=22% Similarity=0.264 Sum_probs=103.3
Q ss_pred cccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhh
Q 038658 156 EDLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVN 235 (831)
Q Consensus 156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~ 235 (831)
..+..++.|+.|.+.. +.+. .+|..++.+++|++|+|++|.++.+|..|+++++|++|+|++|.|+.+|..++
T Consensus 218 ~~~~~l~~L~~L~Ls~------n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSN------LQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp ----CCCCCCEEECTT------SCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred hhhccCCCCcEEECCC------CCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 3466778888885543 3333 67888889999999999999999999999999999999999999999999999
Q ss_pred ccCCccEEeecCcCccccccccccCcccccccccCCCCCcccccCCCCCc
Q 038658 236 KLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKL 285 (831)
Q Consensus 236 ~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L 285 (831)
+|++|++|+|++|. +..+|..|++|++|++|+|++|.+.+.+|..++.+
T Consensus 291 ~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 291 SCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp GGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 99999999999985 67899999999999999999999666677655443
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=2.1e-11 Score=113.86 Aligned_cols=101 Identities=26% Similarity=0.352 Sum_probs=84.9
Q ss_pred cccCCcceEEEEeCCCCccccCccccCCC-CCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccc-cCcccc
Q 038658 187 KLFKLQRLRVFSLCGYWISELPDSIGDLR-YLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGM-GNLIKL 264 (831)
Q Consensus 187 ~~~~l~~L~~L~L~~~~i~~lp~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i-~~L~~L 264 (831)
.+..+.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|. +..+|..+ +.+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 34578899999999999998865 55555 999999999999988 689999999999999986 55677554 899999
Q ss_pred cccccCCCCCcccccC--CCCCccccccc
Q 038658 265 HHLNNSNTDSLEEMPL--GIGKLTCLQTL 291 (831)
Q Consensus 265 ~~L~l~~~~~~~~~p~--~~~~L~~L~~L 291 (831)
++|++++|. ++.+|. .++.+++|+.|
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEE
Confidence 999999998 677775 57777777766
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=8.1e-11 Score=111.33 Aligned_cols=105 Identities=22% Similarity=0.283 Sum_probs=83.0
Q ss_pred CcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccC-ccccCCCCCceeecCCCCCCccch-hhhccCC
Q 038658 162 QHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELP-DSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYN 239 (831)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~ 239 (831)
++++.|.+.+ +.+ ..+|..+..+++|++|+|++|.++.++ ..|..+++|++|+|++|.|+.+|. .+..+++
T Consensus 31 ~~l~~L~L~~------n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDG------NQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS 103 (193)
T ss_dssp TTCCEEECCS------SCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred CCCCEEECCC------CcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCC
Confidence 5777775543 333 356666668999999999999998884 568899999999999999988764 6889999
Q ss_pred ccEEeecCcCccccccc-cccCcccccccccCCCCC
Q 038658 240 LHTLSLEGCRGLRKLCA-GMGNLIKLHHLNNSNTDS 274 (831)
Q Consensus 240 L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~ 274 (831)
|++|++++|. +..+|. .+..+++|++|++++|..
T Consensus 104 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 104 LRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 9999999976 555555 488899999999998873
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=9.6e-11 Score=130.21 Aligned_cols=97 Identities=24% Similarity=0.257 Sum_probs=83.6
Q ss_pred ceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccccccCCC
Q 038658 193 RLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNT 272 (831)
Q Consensus 193 ~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~ 272 (831)
.|++|+|++|.++.+|. |+.+++|++|+|++|.|+.+|..++++++|++|+|++|. +..+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCC
Confidence 58899999999999886 899999999999999999999999999999999999976 55688 7999999999999999
Q ss_pred CCcccc-cCCCCCcccccccc
Q 038658 273 DSLEEM-PLGIGKLTCLQTLC 292 (831)
Q Consensus 273 ~~~~~~-p~~~~~L~~L~~L~ 292 (831)
.+.+.. |..++.+++|+.|.
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEE
Confidence 844433 88899999998884
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=8e-11 Score=130.85 Aligned_cols=138 Identities=22% Similarity=0.252 Sum_probs=104.3
Q ss_pred ccccccccCCcceEEEE-eCCCCccccCc------cccC--CCCCceeecCCCCCCccchhhhccCCccEEeecCcCccc
Q 038658 182 HSILPKLFKLQRLRVFS-LCGYWISELPD------SIGD--LRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLR 252 (831)
Q Consensus 182 ~~~~~~~~~l~~L~~L~-L~~~~i~~lp~------~~~~--l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~ 252 (831)
+..|..+..+++|+.|+ ++.|.+..++. .+.. ...|++|+|++|.++.+|. ++.+++|++|++++|. +.
T Consensus 399 ~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~ 476 (567)
T 1dce_A 399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LR 476 (567)
T ss_dssp GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CC
T ss_pred cCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-cc
Confidence 33445555888888888 56554433321 1111 1359999999999999997 9999999999999986 56
Q ss_pred cccccccCcccccccccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccc-cccccCCC
Q 038658 253 KLCAGMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLE-NAQLDGKK 331 (831)
Q Consensus 253 ~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~-~~~l~~~~ 331 (831)
.+|..++.+++|++|++++|. +..+| .++.+++|+.|. |. .+.+..+. ...+..++
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~--------------------Ls-~N~l~~~~~p~~l~~l~ 533 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELL--------------------LC-NNRLQQSAAIQPLVSCP 533 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEE--------------------CC-SSCCCSSSTTGGGGGCT
T ss_pred ccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEE--------------------CC-CCCCCCCCCcHHHhcCC
Confidence 899999999999999999998 66688 899999999992 22 33344444 45677788
Q ss_pred CcceEEEEeecCC
Q 038658 332 NLKVLMLRWTNST 344 (831)
Q Consensus 332 ~L~~L~l~~~~~~ 344 (831)
+|+.|+++.|...
T Consensus 534 ~L~~L~L~~N~l~ 546 (567)
T 1dce_A 534 RLVLLNLQGNSLC 546 (567)
T ss_dssp TCCEEECTTSGGG
T ss_pred CCCEEEecCCcCC
Confidence 8999999877653
No 132
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.06 E-value=5.6e-11 Score=134.38 Aligned_cols=84 Identities=15% Similarity=0.197 Sum_probs=75.1
Q ss_pred CCchHHHHhccccCChhh-hhHhhhhCCCCCCCccCHHHHHHHHHHcCCcCCCCCCCchHHHHHHHHHHHHhcccceeec
Q 038658 18 CDIIPALRVSYYYLSAPL-KQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSS 96 (831)
Q Consensus 18 ~~i~~~L~lSY~~L~~~~-k~cfl~~~~fp~~~~i~~~~Li~~wi~~G~i~~~~~~~~~~~~~~~~~~~Lv~~~ll~~~~ 96 (831)
+.|..+|++||+.||++. |.||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++||++..
T Consensus 353 ~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d- 420 (1221)
T 1vt4_I 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ- 420 (1221)
T ss_dssp HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC-
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEe-
Confidence 579999999999999998 99999999999999999999999999988 13488999999999999985
Q ss_pred CCcccEeecHHHHHHHH
Q 038658 97 NNKSLFVMHDLINDLAH 113 (831)
Q Consensus 97 ~~~~~~~mHdlv~d~a~ 113 (831)
+....|+|||++++++.
T Consensus 421 ~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 421 PKESTISIPSIYLELKV 437 (1221)
T ss_dssp SSSSEEBCCCHHHHHHH
T ss_pred CCCCEEEehHHHHHHhc
Confidence 34568999999999663
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=2e-12 Score=123.52 Aligned_cols=101 Identities=22% Similarity=0.283 Sum_probs=75.2
Q ss_pred cccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhccCCccEEeecCcCccccccccccCcccccc
Q 038658 187 KLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHH 266 (831)
Q Consensus 187 ~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 266 (831)
.+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .++.+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCCE
Confidence 5667888888888888888877 7788888888888888888888877778888888888874 55566 5778888888
Q ss_pred cccCCCCCcccccC--CCCCccccccc
Q 038658 267 LNNSNTDSLEEMPL--GIGKLTCLQTL 291 (831)
Q Consensus 267 L~l~~~~~~~~~p~--~~~~L~~L~~L 291 (831)
|++++|. +..+|. .++.+++|++|
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEE
Confidence 8888876 444332 35555555554
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=7.8e-10 Score=103.27 Aligned_cols=98 Identities=30% Similarity=0.422 Sum_probs=62.3
Q ss_pred cceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCccchh-hhccCCccEEeecCcCccccccc-cccCcccccccc
Q 038658 192 QRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTLPES-VNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLN 268 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~ 268 (831)
++|++|++++|.++.+|. .|+.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|. .++.+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEE
Confidence 467777777777776643 456777777777777777766643 4677777777777765 334433 356777777777
Q ss_pred cCCCCCcccccCC-CCCccccccc
Q 038658 269 NSNTDSLEEMPLG-IGKLTCLQTL 291 (831)
Q Consensus 269 l~~~~~~~~~p~~-~~~L~~L~~L 291 (831)
+++|. +..+|.+ ++.+++|++|
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred CcCCc-ceEeCHHHhcCCcccCEE
Confidence 77776 4445543 3445444444
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=4.1e-10 Score=104.35 Aligned_cols=94 Identities=22% Similarity=0.294 Sum_probs=69.4
Q ss_pred cccccccCCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccchh-hhccCCccEEeecCcCcccccccc-cc
Q 038658 183 SILPKLFKLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPES-VNKLYNLHTLSLEGCRGLRKLCAG-MG 259 (831)
Q Consensus 183 ~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~ 259 (831)
.+|..+. ++|++|+|++|.++.+ |..|+.+++|++|+|++|+|+.+|.. +.++++|++|+|++|. +..+|.. ++
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~ 102 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFD 102 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhc
Confidence 4455443 6788888888888877 56778888888888888888888765 4788888888888865 5555554 78
Q ss_pred CcccccccccCCCCCcccccC
Q 038658 260 NLIKLHHLNNSNTDSLEEMPL 280 (831)
Q Consensus 260 ~L~~L~~L~l~~~~~~~~~p~ 280 (831)
.+++|++|++++|. +...+.
T Consensus 103 ~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 103 NLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp TCTTCSEEECCSSC-BCTTBG
T ss_pred cccCCCEEEeCCCC-cccccc
Confidence 88888888888887 443443
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=1.8e-09 Score=112.07 Aligned_cols=95 Identities=8% Similarity=0.097 Sum_probs=59.9
Q ss_pred CcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccc-hhhhc--------cCCccEEeecCcCccccccc-cccC
Q 038658 191 LQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLP-ESVNK--------LYNLHTLSLEGCRGLRKLCA-GMGN 260 (831)
Q Consensus 191 l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~--------L~~L~~L~l~~~~~~~~lp~-~i~~ 260 (831)
+++|++|||++|.+......-+.+..++++.+..+ .+| ..|.+ +.+|+.|++.+ .+..++. .|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence 77899999999988722111122333555665555 344 34566 88888888887 3555554 4888
Q ss_pred cccccccccCCCCCcccccC-CCCCccccccc
Q 038658 261 LIKLHHLNNSNTDSLEEMPL-GIGKLTCLQTL 291 (831)
Q Consensus 261 L~~L~~L~l~~~~~~~~~p~-~~~~L~~L~~L 291 (831)
+++|+.+++++|. +..++. .|....++..+
T Consensus 123 ~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 123 CDNLKICQIRKKT-APNLLPEALADSVTAIFI 153 (329)
T ss_dssp CTTCCEEEBCCSS-CCEECTTSSCTTTCEEEE
T ss_pred CcccceEEcCCCC-ccccchhhhcCCCceEEe
Confidence 8888888888887 434443 36665555554
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=1.1e-09 Score=101.47 Aligned_cols=94 Identities=23% Similarity=0.402 Sum_probs=82.7
Q ss_pred EEEEeCCCCccccCccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCcccccccc-ccCcccccccccCCC
Q 038658 195 RVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNSNT 272 (831)
Q Consensus 195 ~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~ 272 (831)
++++++++.++.+|..+. .+|++|+|++|.|+.+ |..++++++|++|+|++|. +..+|.. ++++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 689999999999998875 8999999999999988 5688999999999999986 6667765 689999999999999
Q ss_pred CCcccccCC-CCCcccccccc
Q 038658 273 DSLEEMPLG-IGKLTCLQTLC 292 (831)
Q Consensus 273 ~~~~~~p~~-~~~L~~L~~L~ 292 (831)
. +..+|.+ ++.+++|+.|.
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEE
T ss_pred c-cceeCHHHhccccCCCEEE
Confidence 8 6677765 89999999883
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=1.8e-09 Score=100.81 Aligned_cols=108 Identities=24% Similarity=0.274 Sum_probs=87.0
Q ss_pred CCcceEEccccccCCCcccccccccccc-cCCcceEEEEeCCCCccccCc-cccCCCCCceeecCCCCCCccchh-hhcc
Q 038658 161 IQHLRTFLPVCLSNSSQGFLAHSILPKL-FKLQRLRVFSLCGYWISELPD-SIGDLRYLRYLNLSGTQIRTLPES-VNKL 237 (831)
Q Consensus 161 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~i~~lp~-~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L 237 (831)
.++++.|.+.+ +.+. .+++.. ..+++|++|++++|.++.+|. .|+.+++|++|++++|.++.+|.. +..+
T Consensus 27 ~~~l~~L~l~~------n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELES------NKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99 (177)
T ss_dssp CTTCSEEECCS------SCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCcEEEeCC------Cccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCC
Confidence 36788886543 3333 445554 489999999999999999865 468999999999999999988764 6899
Q ss_pred CCccEEeecCcCcccccccc-ccCcccccccccCCCCCcc
Q 038658 238 YNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNSNTDSLE 276 (831)
Q Consensus 238 ~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~ 276 (831)
++|++|++++|. +..+|.. +..+++|++|++++|....
T Consensus 100 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 100 TQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 999999999986 5566665 6889999999999998444
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.94 E-value=1.4e-09 Score=100.36 Aligned_cols=81 Identities=30% Similarity=0.406 Sum_probs=40.3
Q ss_pred cceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccchh-hhccCCccEEeecCcCccccccc-cccCcccccccc
Q 038658 192 QRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPES-VNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLN 268 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~ 268 (831)
+.|++|+|++|.++.+ |..|..+++|++|+|++|+|+.+|.. +.++++|++|+|++|. +..+|. .+..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEE
Confidence 4455555555555544 34455555555555555555555432 3455555555555543 333332 245555555555
Q ss_pred cCCCC
Q 038658 269 NSNTD 273 (831)
Q Consensus 269 l~~~~ 273 (831)
+++|.
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 55554
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.94 E-value=1.1e-11 Score=118.18 Aligned_cols=126 Identities=21% Similarity=0.233 Sum_probs=103.3
Q ss_pred ccccCCcceEEccccccCCCcccccccccccccCCcceEEEEeCCCCccccCccccCCCCCceeecCCCCCCccchhhhc
Q 038658 157 DLYNIQHLRTFLPVCLSNSSQGFLAHSILPKLFKLQRLRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTLPESVNK 236 (831)
Q Consensus 157 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~ 236 (831)
.+..+++|+.|.+.+ +.+.. +| .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .++.
T Consensus 43 ~~~~l~~L~~L~ls~------n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALST------NNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSE------EEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCC------CCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 567889999996543 33333 45 666999999999999999999988888999999999999999987 7999
Q ss_pred cCCccEEeecCcCccccccc--cccCcccccccccCCCCCcccccCC----------CCCcccccccc
Q 038658 237 LYNLHTLSLEGCRGLRKLCA--GMGNLIKLHHLNNSNTDSLEEMPLG----------IGKLTCLQTLC 292 (831)
Q Consensus 237 L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----------~~~L~~L~~L~ 292 (831)
+++|++|++++|. +..+|. .+..+++|++|++++|...+..|.. +..+++|+.|+
T Consensus 114 l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999999976 555543 6899999999999999855554543 67788888874
No 141
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.92 E-value=6.5e-10 Score=138.37 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=79.5
Q ss_pred CCchHHHHhccccCChhhhhHhhhhCCCCCCCccCHHHHHHHHHHcCCcCCCCCCCchHHHHHHHHHHHHhcccceeec-
Q 038658 18 CDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSS- 96 (831)
Q Consensus 18 ~~i~~~L~lSY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~wi~~G~i~~~~~~~~~~~~~~~~~~~Lv~~~ll~~~~- 96 (831)
+.+..+|++||+.||.++|.||+|||+||+++.|+++.++..|.++ ++.++.++++|++++|++...
T Consensus 362 ~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~ 429 (1249)
T 3sfz_A 362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRN 429 (1249)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEES
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecC
Confidence 3589999999999999999999999999999999999999999554 366899999999999999764
Q ss_pred CCcccEeecHHHHHHHHHHhcCc
Q 038658 97 NNKSLFVMHDLINDLAHWAAGEI 119 (831)
Q Consensus 97 ~~~~~~~mHdlv~d~a~~i~~~~ 119 (831)
+....|+|||+||++|+..+.++
T Consensus 430 ~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 430 GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCceEEEecHHHHHHHHhhhhHH
Confidence 23346999999999999987765
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.89 E-value=2.8e-09 Score=98.41 Aligned_cols=96 Identities=26% Similarity=0.392 Sum_probs=81.5
Q ss_pred eEEEEeCCCCccccCccccCCCCCceeecCCCCCCcc-chhhhccCCccEEeecCcCcccccccc-ccCcccccccccCC
Q 038658 194 LRVFSLCGYWISELPDSIGDLRYLRYLNLSGTQIRTL-PESVNKLYNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNSN 271 (831)
Q Consensus 194 L~~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~ 271 (831)
.++++++++.++.+|..+. .+|++|+|++|.|+.+ |..+.++++|++|++++|. +..+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCC
Confidence 4689999999999998774 8999999999999988 5678999999999999986 5566554 68999999999999
Q ss_pred CCCcccccCC-CCCccccccccc
Q 038658 272 TDSLEEMPLG-IGKLTCLQTLCN 293 (831)
Q Consensus 272 ~~~~~~~p~~-~~~L~~L~~L~~ 293 (831)
|. +..+|.+ ++.+++|+.|..
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEEC
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEe
Confidence 98 6666654 889999998843
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=6.6e-08 Score=100.28 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=20.6
Q ss_pred CCcccEEEEcccc-Ccc-ccCCCCCccceEEEcCCCCc
Q 038658 494 LPALEMLVIGGCE-ELL-VSITSLPALSKLEIGGCKKV 529 (831)
Q Consensus 494 l~~L~~L~l~~~~-~l~-~~~~~l~~L~~L~l~~~~~~ 529 (831)
+++|+.+.+.+.- .+. ..|..+++|+.+++.++...
T Consensus 100 ~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 100 KQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp CTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred cCCCcEEECCccccchhHHHhhcCcccceEEcCCCCcc
Confidence 6677777776611 111 34556777777777766533
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.70 E-value=2.2e-06 Score=91.28 Aligned_cols=64 Identities=8% Similarity=0.166 Sum_probs=36.8
Q ss_pred cccc-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccc-cccCcccccccccC
Q 038658 204 ISEL-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCA-GMGNLIKLHHLNNS 270 (831)
Q Consensus 204 i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~-~i~~L~~L~~L~l~ 270 (831)
++++ ..+|.++.+|+.+.+..+ ++.++ .++.++.+|+.+++..+ +..++. .+.++.+|+.+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhccc
Confidence 3444 345667777777777543 66664 35667777777777542 333332 35566666655544
No 145
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.66 E-value=1.7e-08 Score=114.29 Aligned_cols=88 Identities=18% Similarity=0.263 Sum_probs=75.7
Q ss_pred CCchHHHHhccccCChhhhhHhhhhCCCCCCCccCHHHHHHHHHHcCCcCCCCCCCchHHHHHHHHHHHHhcccceeec-
Q 038658 18 CDIIPALRVSYYYLSAPLKQCFAYCSLFPKDYEFEEEEIILLWSAVGFLDHRKSENPCEDLGRKFFQELRARSFFQQSS- 96 (831)
Q Consensus 18 ~~i~~~L~lSY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~wi~~G~i~~~~~~~~~~~~~~~~~~~Lv~~~ll~~~~- 96 (831)
..+..+++.||+.||.+.|.||++||+||+|+.|+.+.++..|.++ .+.+..++++|++++|++...
T Consensus 362 ~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~ 429 (591)
T 1z6t_A 362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRN 429 (591)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecC
Confidence 4688999999999999999999999999999999999999999533 234788999999999998653
Q ss_pred CCcccEeecHHHHHHHHHHhc
Q 038658 97 NNKSLFVMHDLINDLAHWAAG 117 (831)
Q Consensus 97 ~~~~~~~mHdlv~d~a~~i~~ 117 (831)
+....|.|||+||+++...+.
T Consensus 430 ~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 430 GKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp TTEEEEECCHHHHHHHHHHTG
T ss_pred CCccEEEEcHHHHHHHHhhhh
Confidence 344579999999999987743
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=4e-08 Score=102.96 Aligned_cols=88 Identities=18% Similarity=0.133 Sum_probs=49.5
Q ss_pred ccccccCCcceEEEEeCC-CCccccC-ccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccC
Q 038658 184 ILPKLFKLQRLRVFSLCG-YWISELP-DSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGN 260 (831)
Q Consensus 184 ~~~~~~~l~~L~~L~L~~-~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~ 260 (831)
+|. +..+++|++|+|++ |.++.+| ..|+.+.+|++|+|++|+|+.+|+ .|.+|++|++|+|++|. +..+|..+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcc
Confidence 444 44566666666664 6666554 455666666666666666665543 45666666666666654 3344443322
Q ss_pred cccccccccCCCC
Q 038658 261 LIKLHHLNNSNTD 273 (831)
Q Consensus 261 L~~L~~L~l~~~~ 273 (831)
..+|+.|++.+|.
T Consensus 102 ~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 102 GLSLQELVLSGNP 114 (347)
T ss_dssp SCCCCEEECCSSC
T ss_pred cCCceEEEeeCCC
Confidence 2226666666654
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.62 E-value=3.8e-07 Score=96.54 Aligned_cols=233 Identities=13% Similarity=0.120 Sum_probs=112.6
Q ss_pred ceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecCcCccccccccccCcccccccccC
Q 038658 193 RLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNS 270 (831)
Q Consensus 193 ~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~ 270 (831)
+|+.+.+..+ ++.+ ..+|.+. +|+.+.+.. .++.++ .++.++.+|+.+++.+|. +..+|...-...+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeC
Confidence 5666666554 5555 3455553 566666664 455554 456666777777776543 45555443334666666665
Q ss_pred CCCCcccccCC-CCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCCCh
Q 038658 271 NTDSLEEMPLG-IGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGSSL 349 (831)
Q Consensus 271 ~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~~~ 349 (831)
.+ +..++.. |..+++|+.+..- -.+..+....|.+ .+|+.+.+.. ....
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~----------------------~~l~~I~~~aF~~-~~L~~i~lp~-~i~~---- 261 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIP----------------------ENVSTIGQEAFRE-SGITTVKLPN-GVTN---- 261 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECC----------------------TTCCEECTTTTTT-CCCSEEEEET-TCCE----
T ss_pred Cc--hheehhhHhhCCCCCCEEecC----------------------CCccCcccccccc-CCccEEEeCC-CccE----
Confidence 43 4444433 5666666655110 0011222233333 3444444411 1100
Q ss_pred hhhhhHHhhhcCCCCCCCccEEEEeeecCC-----CCCccCCCCCCCceeEEEEecCCCCCCCC--CCCCCCCcceEEec
Q 038658 350 REAETQKGVLDMLKPHKNLEQFFISGYGGT-----KFPIWLGDSSFSNLVTLKFEDCGMCTTLP--SVGQLPSLKHLAVR 422 (831)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~L~ 422 (831)
.....+..+++|+.+.+.++... .++..... .+++|+.+.+.++ ...++ .+.++++|+.+.|.
T Consensus 262 -------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~-~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 262 -------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE-GCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp -------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT-TCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEEC
T ss_pred -------EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh-CCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEEC
Confidence 01123444455555555544332 23322222 2566666666632 22232 56667777777774
Q ss_pred cccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCC-cccEEeEcC
Q 038658 423 RMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFP-KLRELEVIG 482 (831)
Q Consensus 423 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~L~~L~l~~ 482 (831)
. .++.++...+.. + +|+.+.+.+.. ..... . ..+.+++ .++.|.+-.
T Consensus 332 ~--~l~~I~~~aF~~-----~-~L~~l~l~~n~-~~~l~-~---~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 332 A--NVTQINFSAFNN-----T-GIKEVKVEGTT-PPQVF-E---KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp T--TCCEECTTSSSS-----S-CCCEEEECCSS-CCBCC-C---SSCCCSCTTCCEEEECG
T ss_pred c--cccEEcHHhCCC-----C-CCCEEEEcCCC-Ccccc-c---ccccCCCCCccEEEeCH
Confidence 3 355554443332 4 67777766531 11111 1 1133443 567777754
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=1.1e-06 Score=92.97 Aligned_cols=256 Identities=11% Similarity=0.136 Sum_probs=167.5
Q ss_pred CcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCcccccc-ccccCccccccc
Q 038658 191 LQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLC-AGMGNLIKLHHL 267 (831)
Q Consensus 191 l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L 267 (831)
+..++.+.+.. .++.+ ..+|.+. +|+.+.+..+ ++.++. ++.+ .+|+.+.+.. .+..++ ..|.++.+|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCee
Confidence 45666666654 36666 4567765 7999999876 888864 5666 4799999986 355554 458999999999
Q ss_pred ccCCCCCcccccCCCCCccccccccceEecCCCCCcchhhhccccccCeeeEcccccccccCCCCcceEEEEeecCCCCC
Q 038658 268 NNSNTDSLEEMPLGIGKLTCLQTLCNFVVGKDSGSRLRELKLLTHLRGTLTISKLENAQLDGKKNLKVLMLRWTNSTDGS 347 (831)
Q Consensus 268 ~l~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~l~~~~~L~~L~l~~~~~~~~~ 347 (831)
++.+|. +..+|.+.-..++|+.+. + ...+..+....|.++.+|+.+.+..+ ...
T Consensus 186 ~l~~n~-l~~I~~~aF~~~~L~~l~--------------------l--p~~l~~I~~~aF~~~~~L~~l~l~~~-l~~-- 239 (401)
T 4fdw_A 186 DLSKTK-ITKLPASTFVYAGIEEVL--------------------L--PVTLKEIGSQAFLKTSQLKTIEIPEN-VST-- 239 (401)
T ss_dssp ECTTSC-CSEECTTTTTTCCCSEEE--------------------C--CTTCCEECTTTTTTCTTCCCEECCTT-CCE--
T ss_pred ecCCCc-ceEechhhEeecccCEEE--------------------e--CCchheehhhHhhCCCCCCEEecCCC-ccC--
Confidence 999887 777776633356666661 1 11244556678889999999988432 100
Q ss_pred ChhhhhhHHhhhcCCCCCCCccEEEEeeecCCCCCccCCCCCCCceeEEEEecCCCC----CCCC--CCCCCCCcceEEe
Q 038658 348 SLREAETQKGVLDMLKPHKNLEQFFISGYGGTKFPIWLGDSSFSNLVTLKFEDCGMC----TTLP--SVGQLPSLKHLAV 421 (831)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~----~~~~--~l~~l~~L~~L~L 421 (831)
.....+.. .+|+.+.+. +....++..... .+++|+.+.+.++... ..++ .+.++++|+.+.+
T Consensus 240 ---------I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~-~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 240 ---------IGQEAFRE-SGITTVKLP-NGVTNIASRAFY-YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp ---------ECTTTTTT-CCCSEEEEE-TTCCEECTTTTT-TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred ---------cccccccc-CCccEEEeC-CCccEEChhHhh-CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 01123444 689999984 445555544433 3789999999887654 1233 6889999999999
Q ss_pred ccccCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCCCCCCcccEEeEcCCcCcccCCCC----CC-Cc
Q 038658 422 RRMSRVRRLGSEFYGNDTPIPFPCLETLRFENLLEWEDWIPHGSTQGVEGFPKLRELEVIGCSKLKGTFPE----HL-PA 496 (831)
Q Consensus 422 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~----~l-~~ 496 (831)
.+ .++.++...+.. +++|+.+.+.. ++..+-. ..+..+ +|+.+.+.++ .+. .++. .+ .+
T Consensus 308 ~~--~i~~I~~~aF~~-----c~~L~~l~lp~--~l~~I~~----~aF~~~-~L~~l~l~~n-~~~-~l~~~~F~~~~~~ 371 (401)
T 4fdw_A 308 PE--SIRILGQGLLGG-----NRKVTQLTIPA--NVTQINF----SAFNNT-GIKEVKVEGT-TPP-QVFEKVWYGFPDD 371 (401)
T ss_dssp CT--TCCEECTTTTTT-----CCSCCEEEECT--TCCEECT----TSSSSS-CCCEEEECCS-SCC-BCCCSSCCCSCTT
T ss_pred CC--ceEEEhhhhhcC-----CCCccEEEECc--cccEEcH----HhCCCC-CCCEEEEcCC-CCc-ccccccccCCCCC
Confidence 73 577776555433 78888888854 2322221 226667 9999999884 444 3332 23 36
Q ss_pred ccEEEEcccc
Q 038658 497 LEMLVIGGCE 506 (831)
Q Consensus 497 L~~L~l~~~~ 506 (831)
++.|.+-...
T Consensus 372 l~~l~vp~~~ 381 (401)
T 4fdw_A 372 ITVIRVPAES 381 (401)
T ss_dssp CCEEEECGGG
T ss_pred ccEEEeCHHH
Confidence 7788776543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.54 E-value=1.1e-07 Score=99.70 Aligned_cols=94 Identities=18% Similarity=0.138 Sum_probs=77.9
Q ss_pred EEEeCCC-CccccCccccCCCCCceeecCC-CCCCccc-hhhhccCCccEEeecCcCccccccccccCcccccccccCCC
Q 038658 196 VFSLCGY-WISELPDSIGDLRYLRYLNLSG-TQIRTLP-ESVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHLNNSNT 272 (831)
Q Consensus 196 ~L~L~~~-~i~~lp~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l~~~ 272 (831)
.++++++ .++.+|. |+.+.+|++|+|++ |.|+.+| ..+++|.+|++|+|++|......|..|++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4588888 8999999 99999999999996 9999887 57899999999999998755555667899999999999999
Q ss_pred CCcccccCC-CCCcccccccc
Q 038658 273 DSLEEMPLG-IGKLTCLQTLC 292 (831)
Q Consensus 273 ~~~~~~p~~-~~~L~~L~~L~ 292 (831)
. +..+|.+ +..+. |+.|.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEE
T ss_pred c-cceeCHHHcccCC-ceEEE
Confidence 8 6677766 44444 77774
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.44 E-value=1.4e-05 Score=84.88 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=46.4
Q ss_pred cccccc-CCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccc-hhhhccCCccEEeecC
Q 038658 184 ILPKLF-KLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLP-ESVNKLYNLHTLSLEG 247 (831)
Q Consensus 184 ~~~~~~-~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~ 247 (831)
+....| ++.+|+.+.+..+ ++.+ ..+|.++.+|+.+++..+ ++.++ .++.++.+|+.+.+..
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 444444 8889999998743 7777 467889999999999765 67775 4678888888776654
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.34 E-value=3e-07 Score=83.03 Aligned_cols=38 Identities=5% Similarity=0.228 Sum_probs=19.6
Q ss_pred CCcCeEEEccCCCcceec--cCCCCCCCceEEEecCCCCCc
Q 038658 697 LSLEILTISRCHSLTYIA--EVQLPPSLKNVVIRNCDNVRT 735 (831)
Q Consensus 697 ~~L~~L~l~~c~~l~~l~--~~~~~~~L~~L~l~~c~~l~~ 735 (831)
.+|++|++++|. ++... ....+++|++|++++|..++.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCH
Confidence 356666666664 43311 112345666666666665553
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.25 E-value=6e-08 Score=101.68 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=39.0
Q ss_pred cceEEEEeCCCCcccc-Ccc----cc-CCCCCceeecCCCCCCc--cchhhhccCCccEEeecCcCccccccccc-----
Q 038658 192 QRLRVFSLCGYWISEL-PDS----IG-DLRYLRYLNLSGTQIRT--LPESVNKLYNLHTLSLEGCRGLRKLCAGM----- 258 (831)
Q Consensus 192 ~~L~~L~L~~~~i~~l-p~~----~~-~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~lp~~i----- 258 (831)
+.|++|+|++|.++.. ... +. ...+|++|+|++|.+.. +..-...+.+|++|+|++|.....-...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4456666666665432 111 11 22466666666666542 11222344566666666654322211112
Q ss_pred cCcccccccccCCCC
Q 038658 259 GNLIKLHHLNNSNTD 273 (831)
Q Consensus 259 ~~L~~L~~L~l~~~~ 273 (831)
...++|++|++++|.
T Consensus 152 ~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 152 HDQCQITTLRLSNNP 166 (372)
T ss_dssp STTCCCCEEECCSSC
T ss_pred hcCCccceeeCCCCC
Confidence 123556666666665
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=7.8e-07 Score=80.30 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=39.7
Q ss_pred CccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCccccCCCC------CCCccEEEEecCCCCccccc-ccccCCCC
Q 038658 625 RLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFPEVAL------PSKVRSISIHRCDALKSLPE-AWMCDANL 697 (831)
Q Consensus 625 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~~~~~------~~~L~~L~l~~c~~l~~l~~-~~~~~~l~ 697 (831)
+|+.|++++|.....--..+..+++|++|+|++|..+++-.-..+ .++|++|++++|..+++-.- .+.. ++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~--~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH--FR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG--CT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc--CC
Confidence 466666666653322223345566666666666665543211000 12455555555555444221 1111 44
Q ss_pred CcCeEEEccCCCcc
Q 038658 698 SLEILTISRCHSLT 711 (831)
Q Consensus 698 ~L~~L~l~~c~~l~ 711 (831)
+|++|++++|+.++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 44444444444443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.02 E-value=8.1e-06 Score=84.61 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=45.4
Q ss_pred cccCCCCCCCeEEEecCCCCccccCCCCCCCccEEEEecCCCCcccccccccCCCCCcCeEEEccCC-------Ccceec
Q 038658 642 QSLLSLSSLREIEIYNCSSFVSFPEVALPSKVRSISIHRCDALKSLPEAWMCDANLSLEILTISRCH-------SLTYIA 714 (831)
Q Consensus 642 ~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~-------~l~~l~ 714 (831)
..+..+++|+.|+|++|..+ .++.. ..++|++|++..|..-......+....+|+|+.|+++.+. .++.+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 34455677777777776333 23321 2667777777765532222222221237777777775321 121111
Q ss_pred ---cCCCCCCCceEEEecCC
Q 038658 715 ---EVQLPPSLKNVVIRNCD 731 (831)
Q Consensus 715 ---~~~~~~~L~~L~l~~c~ 731 (831)
....+|+|+.|.+.+|.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCT
T ss_pred HHHhcCCCCCcCEEeCCCCC
Confidence 11234677777777764
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.97 E-value=1.7e-06 Score=90.52 Aligned_cols=84 Identities=20% Similarity=0.108 Sum_probs=42.0
Q ss_pred CCcceEEEEeCCCCcccc-Ccc----c-cCCCCCceeecCCCCCCc-----cchhhhccCCccEEeecCcCccc----cc
Q 038658 190 KLQRLRVFSLCGYWISEL-PDS----I-GDLRYLRYLNLSGTQIRT-----LPESVNKLYNLHTLSLEGCRGLR----KL 254 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~l-p~~----~-~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~----~l 254 (831)
.+++|++|+|++|.++.. ... + ....+|++|+|++|.|+. ++..+..+++|++|+|++|.... .+
T Consensus 124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L 203 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL 203 (372)
T ss_dssp HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH
T ss_pred HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH
Confidence 344566666666655422 111 1 234556666666665542 33444555566666666654221 12
Q ss_pred cccccCcccccccccCCCC
Q 038658 255 CAGMGNLIKLHHLNNSNTD 273 (831)
Q Consensus 255 p~~i~~L~~L~~L~l~~~~ 273 (831)
+..+...++|++|++++|.
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHGGGCSCCCEEECCSSC
T ss_pred HHHHhcCCCcCeEECCCCC
Confidence 3344455556666666655
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.93 E-value=0.0005 Score=72.84 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=29.7
Q ss_pred CcccccCCCccEEeeecCCCcccchhhhhhhHhhhhcccCCccEEEeccCCCCcccc-cccCCCCCCCeEEEecC
Q 038658 585 NGFLQDISSLKRLTIGWCPTLQSLVAEEEKDQQQLCELSCRLEYLLLNDCKGLVKLP-QSLLSLSSLREIEIYNC 658 (831)
Q Consensus 585 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~L~~~ 658 (831)
...+.++.+|+++.+.. +++.+....|..- .+|+.+.+..+ ++.+. ..|.+|++|+.+++.++
T Consensus 304 ~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C-------~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 304 ESVFAGCISLKSIDIPE--GITQILDDAFAGC-------EQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTTTCTTCCEEECCT--TCCEECTTTTTTC-------TTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred ceeecCCCCcCEEEeCC--cccEehHhHhhCC-------CCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence 33444555555555532 3444433333222 34555555432 23332 34666666666666654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.89 E-value=8.5e-06 Score=79.71 Aligned_cols=62 Identities=27% Similarity=0.323 Sum_probs=28.4
Q ss_pred CCCCCceeecCCCCCCcc---chhhhccCCccEEeecCcCccccccccccCcc--cccccccCCCCCcc
Q 038658 213 DLRYLRYLNLSGTQIRTL---PESVNKLYNLHTLSLEGCRGLRKLCAGMGNLI--KLHHLNNSNTDSLE 276 (831)
Q Consensus 213 ~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~--~L~~L~l~~~~~~~ 276 (831)
++++|++|+|++|.|+.+ |..+..+++|++|+|++|. +..+ ..+..+. +|++|++++|...+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCcc
Confidence 345555555555555433 2334455555555555543 2222 1233333 55555555555333
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.85 E-value=0.00042 Score=73.41 Aligned_cols=105 Identities=10% Similarity=0.117 Sum_probs=64.7
Q ss_pred ccccCC-cceEEccccccCCCccccccccccccc-CCcceEEEEeCCCC---cccc-CccccCCCCCceeecCCCCCCcc
Q 038658 157 DLYNIQ-HLRTFLPVCLSNSSQGFLAHSILPKLF-KLQRLRVFSLCGYW---ISEL-PDSIGDLRYLRYLNLSGTQIRTL 230 (831)
Q Consensus 157 ~~~~~~-~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~---i~~l-p~~~~~l~~Lr~L~L~~~~i~~l 230 (831)
+|.+++ .|+.+.+... ...+....| ++.+|+.+.+..+. ++.+ ..+|..+..|+.+.+..+ ++.+
T Consensus 58 aF~~~~~~L~sI~iP~s--------vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT--------VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp TTTTCCSCCCEEEECTT--------CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred hccCCCCcCEEEEECCC--------eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 455553 4666644221 123334444 78888888887653 5566 456777888888777654 5555
Q ss_pred c-hhhhccCCccEEeecCcCcccccc-ccccCcccccccccCCC
Q 038658 231 P-ESVNKLYNLHTLSLEGCRGLRKLC-AGMGNLIKLHHLNNSNT 272 (831)
Q Consensus 231 p-~~i~~L~~L~~L~l~~~~~~~~lp-~~i~~L~~L~~L~l~~~ 272 (831)
+ ..+..+.+|+.+.+... ...++ ..+....+|+.+.+..+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 4 45677888888888652 33333 33667777777777654
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.81 E-value=2e-05 Score=81.69 Aligned_cols=128 Identities=12% Similarity=0.133 Sum_probs=62.0
Q ss_pred CccEEEeccCCCCcccccccCCCCCCCeEEEecCCCCcccc--C--CCCCCCccEEEEecCC-------CCccccccccc
Q 038658 625 RLEYLLLNDCKGLVKLPQSLLSLSSLREIEIYNCSSFVSFP--E--VALPSKVRSISIHRCD-------ALKSLPEAWMC 693 (831)
Q Consensus 625 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l~--~--~~~~~~L~~L~l~~c~-------~l~~l~~~~~~ 693 (831)
+|+.|.|++|.... ++. + .+++|++|+|..|. +..-. . ...+|+|++|+++.+. .++.+...+..
T Consensus 173 ~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 173 LLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 56666665553221 222 2 25566666666552 22110 0 0125666666664211 12222222222
Q ss_pred CCCCCcCeEEEccCCCcc----eeccCCCCCCCceEEEecCCCCCccc---cccCccCCcccccCccccceEEEecCC
Q 038658 694 DANLSLEILTISRCHSLT----YIAEVQLPPSLKNVVIRNCDNVRTLT---VEEGIQSSSSRRYTSSLLEHLHIESCP 764 (831)
Q Consensus 694 ~~l~~L~~L~l~~c~~l~----~l~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~~~~~~~~l~~~~L~~L~i~~c~ 764 (831)
..+|+|+.|++.+|..-. .+......++|++|+++. +.++... .+.++.+ ++. |++|++++|.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~-----l~~--L~~L~L~~n~ 318 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDK-----IKH--LKFINMKYNY 318 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHH-----HTT--CSEEECCSBB
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhccc-----CCc--ceEEECCCCc
Confidence 236777777777764321 111123346788888854 4565421 0333333 556 8888887763
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=6.7e-06 Score=80.44 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=63.5
Q ss_pred CCcceEEEEeCCCCcccc---CccccCCCCCceeecCCCCCCccchhhhccC--CccEEeecCcCccccccc-------c
Q 038658 190 KLQRLRVFSLCGYWISEL---PDSIGDLRYLRYLNLSGTQIRTLPESVNKLY--NLHTLSLEGCRGLRKLCA-------G 257 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~l---p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~l~~~~~~~~lp~-------~ 257 (831)
.+++|++|+|++|.++.+ |..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++|.....+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 688999999999998865 45667899999999999999977 4455555 999999999986655542 3
Q ss_pred ccCccccccccc
Q 038658 258 MGNLIKLHHLNN 269 (831)
Q Consensus 258 i~~L~~L~~L~l 269 (831)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 667888888763
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.52 E-value=3.8e-05 Score=71.41 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=44.6
Q ss_pred CCcceEEEEeCCCCccc-----cCccccCCCCCceeecCCCCCCc-----cchhhhccCCccEEee--cCcCcccc----
Q 038658 190 KLQRLRVFSLCGYWISE-----LPDSIGDLRYLRYLNLSGTQIRT-----LPESVNKLYNLHTLSL--EGCRGLRK---- 253 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~-----lp~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l--~~~~~~~~---- 253 (831)
..+.|++|+|++|.+.. +...+...+.|++|+|++|.|.. +...+...+.|++|++ ++|.....
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 45566666666666542 23334444566666666666652 3445555566666666 44442211
Q ss_pred ccccccCcccccccccCCCC
Q 038658 254 LCAGMGNLIKLHHLNNSNTD 273 (831)
Q Consensus 254 lp~~i~~L~~L~~L~l~~~~ 273 (831)
+...+...++|++|++++|.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCcCEEeccCCC
Confidence 22334444566666666654
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.48 E-value=2.8e-05 Score=72.32 Aligned_cols=105 Identities=16% Similarity=0.119 Sum_probs=77.8
Q ss_pred cccCCcceEEEEeCCC-Ccc-----ccCccccCCCCCceeecCCCCCCc-----cchhhhccCCccEEeecCcCcccc--
Q 038658 187 KLFKLQRLRVFSLCGY-WIS-----ELPDSIGDLRYLRYLNLSGTQIRT-----LPESVNKLYNLHTLSLEGCRGLRK-- 253 (831)
Q Consensus 187 ~~~~l~~L~~L~L~~~-~i~-----~lp~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~~-- 253 (831)
.+...+.|++|+|++| .+. .+...+...++|++|+|++|.|.. +...+...++|++|+|++|.....
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3447889999999999 775 345667788999999999999873 456677789999999999864332
Q ss_pred --ccccccCccccccccc--CCCCCccc----ccCCCCCccccccc
Q 038658 254 --LCAGMGNLIKLHHLNN--SNTDSLEE----MPLGIGKLTCLQTL 291 (831)
Q Consensus 254 --lp~~i~~L~~L~~L~l--~~~~~~~~----~p~~~~~L~~L~~L 291 (831)
+...+...++|++|++ ++|.+... +...+...++|++|
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L 156 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF 156 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEE
Confidence 4566778889999999 77873322 22334445666666
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.21 E-value=0.064 Score=56.13 Aligned_cols=58 Identities=17% Similarity=0.336 Sum_probs=26.1
Q ss_pred ccCCCCCCCeEEEecCCCCccccCCCC--CCCccEEEEecCCCCccccc-ccccCCCCCcCeEEEc
Q 038658 643 SLLSLSSLREIEIYNCSSFVSFPEVAL--PSKVRSISIHRCDALKSLPE-AWMCDANLSLEILTIS 705 (831)
Q Consensus 643 ~l~~l~~L~~L~L~~~~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~l~ 705 (831)
.+.++.+|+.+.+.. .++.++...+ +.+|+.+.+.+ ..++.++. .+.. +.+|+.+.+.
T Consensus 258 aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~--c~~L~~i~lp 318 (379)
T 4h09_A 258 LLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMD--CVKLSSVTLP 318 (379)
T ss_dssp TTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTT--CTTCCEEECC
T ss_pred ccceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcC--CCCCCEEEcC
Confidence 344455555555543 2444444433 45555555543 22333332 2222 4555555553
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.20 E-value=0.022 Score=59.75 Aligned_cols=77 Identities=8% Similarity=0.109 Sum_probs=36.2
Q ss_pred CCcceEEEEeCCCCcccc-CccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcCccccccccccCccccccc
Q 038658 190 KLQRLRVFSLCGYWISEL-PDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCRGLRKLCAGMGNLIKLHHL 267 (831)
Q Consensus 190 ~l~~L~~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 267 (831)
...+|+.+.+.. .++.+ ..+|.++.+|+.+++..+ ++.++. ++.+. +|+.+.+..+ +..++...-.-.+|+.+
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i 118 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDF 118 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEE
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCcccc
Confidence 334455555442 24444 345666666666666543 555542 44444 4555555431 33333332222355555
Q ss_pred ccCC
Q 038658 268 NNSN 271 (831)
Q Consensus 268 ~l~~ 271 (831)
.+..
T Consensus 119 ~lp~ 122 (379)
T 4h09_A 119 EFPG 122 (379)
T ss_dssp ECCT
T ss_pred cCCC
Confidence 5543
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.28 E-value=0.0057 Score=52.45 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=42.7
Q ss_pred EEEeCCCCcc--ccCccccCCCCCceeecCCCCCCccch-hhhccCCccEEeecCcC
Q 038658 196 VFSLCGYWIS--ELPDSIGDLRYLRYLNLSGTQIRTLPE-SVNKLYNLHTLSLEGCR 249 (831)
Q Consensus 196 ~L~L~~~~i~--~lp~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~ 249 (831)
+++.+++.++ .+|..+. .+|++|+|++|+|+.+|. .+..+.+|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 6788888888 8887654 568999999999999975 46888899999999875
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.32 E-value=0.06 Score=49.40 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=50.0
Q ss_pred CCcceEEEEeCCC-Ccc-----ccCccccCCCCCceeecCCCCCC-----ccchhhhccCCccEEeecCcCcccc----c
Q 038658 190 KLQRLRVFSLCGY-WIS-----ELPDSIGDLRYLRYLNLSGTQIR-----TLPESVNKLYNLHTLSLEGCRGLRK----L 254 (831)
Q Consensus 190 ~l~~L~~L~L~~~-~i~-----~lp~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~----l 254 (831)
.-+.|+.|+|+++ .|. .+-+.+..-+.|+.|+|++|.|. .+-+.+..-+.|++|+|++|..... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4456777777764 554 23455566677777777777776 3345555667777777777653221 2
Q ss_pred cccccCcccccccccCCC
Q 038658 255 CAGMGNLIKLHHLNNSNT 272 (831)
Q Consensus 255 p~~i~~L~~L~~L~l~~~ 272 (831)
-+.+..-+.|++|+++++
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 233444455777777654
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.28 E-value=0.077 Score=45.28 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=43.2
Q ss_pred ceeecCCCCCC--ccchhhhccCCccEEeecCcCcccccccc-ccCcccccccccCCCC
Q 038658 218 RYLNLSGTQIR--TLPESVNKLYNLHTLSLEGCRGLRKLCAG-MGNLIKLHHLNNSNTD 273 (831)
Q Consensus 218 r~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~l~~~~ 273 (831)
.+++.+++.++ .+|..+. .+|++|+|++|. +..+|.+ |..+++|+.|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 47888999998 8986543 469999999976 6667655 7889999999999986
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.12 E-value=0.089 Score=48.26 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=61.5
Q ss_pred ccccCCcceEEEEeCCCCccc-----cCccccCCCCCceeecCCCCCC-----ccchhhhccCCccEEeecCcCc--cc-
Q 038658 186 PKLFKLQRLRVFSLCGYWISE-----LPDSIGDLRYLRYLNLSGTQIR-----TLPESVNKLYNLHTLSLEGCRG--LR- 252 (831)
Q Consensus 186 ~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~--~~- 252 (831)
..+..-+.|+.|+|++|.|.. +-+.+..-+.|++|+|++|.|. .+-+.+..-+.|++|+|++|.. ++
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence 334456789999999999873 3455566688999999999987 3445666677899999986532 22
Q ss_pred ----cccccccCcccccccccCCCC
Q 038658 253 ----KLCAGMGNLIKLHHLNNSNTD 273 (831)
Q Consensus 253 ----~lp~~i~~L~~L~~L~l~~~~ 273 (831)
.+...+..-+.|+.|+++.+.
T Consensus 144 ~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 144 QVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhCCCcCeEeccCCC
Confidence 133344555678888887664
Done!