BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038661
         (697 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LWT|X Chain X, Crystal Structure Of The Yeast Sac1: Implications For Its
           Phosphoinositide Phosphatase Function
          Length = 505

 Score =  171 bits (433), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/523 (26%), Positives = 227/523 (43%), Gaps = 82/523 (15%)

Query: 88  VTTCYGIVGFIKFLGPYYMLIITKRRRIGAICGHNVYAVSKCEMIPLP-NSSVQSSITNS 146
           V     ++GFIK     Y +I       G   GH  Y V +  ++    NS + S     
Sbjct: 53  VVKIASLMGFIKLKLNRYAIIANTVEETGRFNGHVFYRVLQHSIVSTKFNSRIDSE---- 108

Query: 147 KNENRYKKLLCTVDLTKDFFFSYSYHIMRSLQKNFYDNQTGQVV----YETMFVWNEFLT 202
             E  Y KLL        F+FSY+Y +  SLQ+N    + G        +  F WN +LT
Sbjct: 109 --EAEYIKLLELHLKNSTFYFSYTYDLTNSLQRN---EKVGPAASWKTADERFFWNHYLT 163

Query: 203 RGIRNHLQNT----LWTVALVYGFFKQATLSVSGRDFKLTLIARRSRHYAGTRYLKRGVN 258
             +RN          +   ++YG+ K     ++     L LI RRS   AGTRY +RGV+
Sbjct: 164 EDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGVD 223

Query: 259 EKGRVANDVETEQIVFEEVPEGFPMQISSVVQNRGSIPLFWSQETSRLNIKPDIILSKKD 318
           + G V N  ETEQI+  E PE   + + S +Q RGS+P++W+ E + L  KP+++L   +
Sbjct: 224 KDGNVGNFNETEQILLAENPESEKIHVFSFLQTRGSVPIYWA-EINNLKYKPNLVLG--E 280

Query: 319 QNYEATRLHFENLAKRYGNPIIILNLIKTQEKKPRESILRQEFANAIDFINKDLSEENRL 378
            + +AT+ HF+   + YG+  ++ NL+    +K  E  +++ + + +  +N     + ++
Sbjct: 281 NSLDATKKHFDQQKELYGDNYLV-NLVN---QKGHELPVKEGYESVVHALN-----DPKI 331

Query: 379 RFLHWDLHKHSRS-KATNVLLLLGKVATYALTLTGFFYCRVTPSLRPEELINSTSSENVN 437
            ++++D H   R  +   V LL+  +    L+   FF+  +  +    E++N        
Sbjct: 332 HYVYFDFHHECRKMQWHRVKLLIDHLEKLGLSNEDFFHKVIDSNGNTVEIVNE------- 384

Query: 438 NGNLSPQNHCSNDIEDADKLERNLSGDNNVANGNHPIRLPMLQKGVLRTNCIDCLDRTNV 497
                                                     Q  V+RTNC+DCLDRTNV
Sbjct: 385 ------------------------------------------QHSVVRTNCMDCLDRTNV 402

Query: 498 AQYAYGLAALGRQLHALGVIDNPKIDLD-APLADDLMGFYERMGDTLAHQYGGSAAHNKI 556
            Q       L ++  +  V+       D APL       +    D ++  Y G+ A    
Sbjct: 403 VQSVLAQWVLQKEFESADVVATGSTWEDNAPLLTSYQNLWADNADAVSVAYSGTGALKTD 462

Query: 557 FSERRGQWRAATQSQEFFRTLQRYYSNAYMDAEKQDAINVFLG 599
           F+ R G+        +F  +  RYY N + D  +QD+ ++FLG
Sbjct: 463 FT-RTGKRTRLGAFNDFLNSASRYYQNNWTDGPRQDSYDLFLG 504


>pdb|3R64|A Chain A, Crystal Structure Of A Nad-Dependent Benzaldehyde
           Dehydrogenase From Corynebacterium Glutamicum
 pdb|3R64|B Chain B, Crystal Structure Of A Nad-Dependent Benzaldehyde
           Dehydrogenase From Corynebacterium Glutamicum
 pdb|3R64|C Chain C, Crystal Structure Of A Nad-Dependent Benzaldehyde
           Dehydrogenase From Corynebacterium Glutamicum
 pdb|3R64|D Chain D, Crystal Structure Of A Nad-Dependent Benzaldehyde
           Dehydrogenase From Corynebacterium Glutamicum
          Length = 508

 Score = 31.2 bits (69), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 363 NAIDFINKDLSEENRLRFLHWDLHKH--SRSKATNVLLLLGKVATYALTLTGFFYCRVTP 420
           +AI +   +L EE+R   + W + +   +RSKA   + L G +   + +  G  + R++P
Sbjct: 75  SAIIYRAAELLEEHREEIVEWLIKESGSTRSKANLEITLAGNITKESASFPGRVHGRISP 134

Query: 421 SLRP 424
           S  P
Sbjct: 135 SNTP 138


>pdb|2DUL|A Chain A, Crystal Structure Of Trna G26 Methyltransferase Trm1 In
           Apo Form From Pyrococcus Horikoshii
 pdb|2EJT|A Chain A, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
           S-Adenosyl- L-Methionine
 pdb|2EJU|A Chain A, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
           S-Adenosyl- L-Homocystein
 pdb|2YTZ|A Chain A, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
           S- Adenosyl-l-homocystein In The Orthorhombic
           Crystal-lattice
 pdb|2YTZ|B Chain B, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
           S- Adenosyl-l-homocystein In The Orthorhombic
           Crystal-lattice
          Length = 378

 Score = 30.4 bits (67), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 283 MQISSVVQNRGSIPLFWSQET--SRLNIKP----DIILSKKDQNYEATRLHFENLAKRYG 336
           +++  ++     IPLF+       RL I+     +II + ++Q YEATR HF     +  
Sbjct: 306 LKLLKMIDQELDIPLFYDTHAIGRRLKIETKKVEEIISALREQGYEATRTHFSPTGIKTS 365

Query: 337 NP 338
            P
Sbjct: 366 AP 367


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,841,548
Number of Sequences: 62578
Number of extensions: 841443
Number of successful extensions: 1682
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1675
Number of HSP's gapped (non-prelim): 5
length of query: 697
length of database: 14,973,337
effective HSP length: 106
effective length of query: 591
effective length of database: 8,340,069
effective search space: 4928980779
effective search space used: 4928980779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)