Query 038663
Match_columns 385
No_of_seqs 229 out of 2077
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 13:21:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.8E-46 6.1E-51 385.6 30.7 327 44-383 27-385 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 3.1E-35 6.8E-40 273.0 15.5 211 162-383 1-225 (287)
3 PLN03210 Resistant to P. syrin 100.0 7.5E-29 1.6E-33 268.0 27.6 213 155-383 182-417 (1153)
4 TIGR03015 pepcterm_ATPase puta 99.6 7.8E-13 1.7E-17 121.5 24.1 203 176-382 41-268 (269)
5 PF01637 Arch_ATPase: Archaeal 99.5 1.4E-13 3E-18 123.3 13.2 190 159-353 1-234 (234)
6 PRK00411 cdc6 cell division co 99.5 4.2E-12 9.1E-17 123.2 22.6 221 157-381 30-283 (394)
7 PRK04841 transcriptional regul 99.4 2.9E-11 6.3E-16 129.6 19.3 191 157-361 14-233 (903)
8 TIGR02928 orc1/cdc6 family rep 99.4 2.4E-10 5.1E-15 109.8 23.3 222 158-381 16-275 (365)
9 PF05729 NACHT: NACHT domain 99.3 5.7E-11 1.2E-15 100.5 12.7 141 179-325 1-164 (166)
10 TIGR00635 ruvB Holliday juncti 99.3 2.2E-10 4.8E-15 107.3 16.5 186 156-357 3-205 (305)
11 PRK06893 DNA replication initi 99.2 2.7E-10 5.8E-15 102.0 14.2 154 177-357 38-207 (229)
12 PRK00080 ruvB Holliday junctio 99.2 1.6E-10 3.4E-15 109.2 13.0 187 155-356 23-225 (328)
13 COG2256 MGS1 ATPase related to 99.2 3.9E-10 8.4E-15 104.6 13.3 171 155-351 22-210 (436)
14 PF05496 RuvB_N: Holliday junc 99.1 3.5E-09 7.6E-14 92.0 15.9 174 154-358 21-226 (233)
15 PRK13342 recombination factor 99.1 1.2E-09 2.6E-14 106.4 13.9 173 156-357 11-200 (413)
16 TIGR03420 DnaA_homol_Hda DnaA 99.1 1.6E-09 3.5E-14 96.8 13.8 169 161-356 21-204 (226)
17 COG2909 MalT ATP-dependent tra 99.1 1.7E-08 3.7E-13 101.7 19.6 195 156-361 18-241 (894)
18 PTZ00112 origin recognition co 99.0 3.5E-08 7.6E-13 100.4 20.7 220 158-382 756-1008(1164)
19 COG1474 CDC6 Cdc6-related prot 99.0 9.5E-08 2.1E-12 90.9 21.3 192 159-354 19-239 (366)
20 PRK07003 DNA polymerase III su 99.0 1.3E-08 2.8E-13 102.7 16.0 194 155-355 14-223 (830)
21 PRK08084 DNA replication initi 99.0 2E-08 4.3E-13 90.3 14.9 167 164-357 31-213 (235)
22 PF13173 AAA_14: AAA domain 99.0 4.6E-09 1E-13 85.1 9.9 119 178-316 2-127 (128)
23 PRK14961 DNA polymerase III su 99.0 5E-08 1.1E-12 93.4 18.1 189 156-351 15-218 (363)
24 PLN03025 replication factor C 98.9 9.2E-09 2E-13 96.8 12.6 183 155-353 11-200 (319)
25 PRK14949 DNA polymerase III su 98.9 2.1E-08 4.6E-13 103.0 15.8 192 155-353 14-220 (944)
26 PRK12402 replication factor C 98.9 2.4E-08 5.3E-13 94.8 15.2 199 156-356 14-229 (337)
27 PRK08727 hypothetical protein; 98.9 2E-08 4.4E-13 90.0 13.6 160 164-350 27-201 (233)
28 PRK12323 DNA polymerase III su 98.9 2E-08 4.4E-13 100.0 14.6 195 156-353 15-225 (700)
29 PRK14956 DNA polymerase III su 98.9 1.6E-08 3.4E-13 98.2 13.2 197 155-353 16-222 (484)
30 PRK14963 DNA polymerase III su 98.9 7.5E-09 1.6E-13 102.5 11.2 199 156-358 13-223 (504)
31 PRK09087 hypothetical protein; 98.9 3.4E-08 7.5E-13 87.9 13.6 160 177-380 43-222 (226)
32 PRK14962 DNA polymerase III su 98.9 7.7E-08 1.7E-12 94.6 16.5 209 156-377 13-239 (472)
33 TIGR02903 spore_lon_C ATP-depe 98.9 9.8E-07 2.1E-11 89.9 24.9 198 156-356 153-398 (615)
34 PRK06645 DNA polymerase III su 98.9 1E-07 2.2E-12 94.2 17.0 192 155-352 19-228 (507)
35 PRK00440 rfc replication facto 98.8 1.2E-07 2.6E-12 89.3 16.3 181 156-354 16-204 (319)
36 PF13401 AAA_22: AAA domain; P 98.8 3.6E-08 7.7E-13 80.0 11.1 113 177-294 3-125 (131)
37 PRK04195 replication factor C 98.8 6.2E-08 1.3E-12 96.3 15.0 179 155-357 12-206 (482)
38 PRK14957 DNA polymerase III su 98.8 8.4E-08 1.8E-12 95.4 15.7 182 155-354 14-222 (546)
39 PRK14960 DNA polymerase III su 98.8 8.1E-08 1.7E-12 96.0 15.2 189 155-352 13-218 (702)
40 KOG2028 ATPase related to the 98.8 9.4E-08 2E-12 87.7 14.2 157 169-348 153-331 (554)
41 PRK13341 recombination factor 98.8 5.4E-08 1.2E-12 100.0 14.2 172 155-353 26-217 (725)
42 TIGR02397 dnaX_nterm DNA polym 98.8 2.3E-07 5E-12 88.8 17.2 180 155-354 12-219 (355)
43 PRK14955 DNA polymerase III su 98.8 1E-07 2.2E-12 92.3 14.8 194 156-352 15-227 (397)
44 PRK14951 DNA polymerase III su 98.8 1.5E-07 3.2E-12 94.9 16.2 197 155-353 14-225 (618)
45 PRK09112 DNA polymerase III su 98.8 6.2E-07 1.4E-11 85.0 19.5 194 155-354 21-241 (351)
46 COG2255 RuvB Holliday junction 98.8 1.1E-07 2.3E-12 84.7 13.2 175 155-357 24-227 (332)
47 PRK05564 DNA polymerase III su 98.8 3.6E-07 7.7E-12 85.8 17.7 171 157-351 4-188 (313)
48 PTZ00202 tuzin; Provisional 98.8 8.1E-07 1.8E-11 84.4 19.3 161 154-324 259-434 (550)
49 PRK05896 DNA polymerase III su 98.8 5.4E-08 1.2E-12 96.9 12.1 192 155-355 14-223 (605)
50 PRK07994 DNA polymerase III su 98.8 1.4E-07 3.1E-12 95.2 15.0 192 155-353 14-220 (647)
51 PRK14964 DNA polymerase III su 98.8 3.2E-07 6.9E-12 90.0 16.2 191 155-352 11-216 (491)
52 COG3899 Predicted ATPase [Gene 98.7 1.3E-07 2.8E-12 99.4 14.2 200 158-360 1-267 (849)
53 cd00009 AAA The AAA+ (ATPases 98.7 2E-07 4.2E-12 76.6 12.5 121 161-296 2-131 (151)
54 PRK07471 DNA polymerase III su 98.7 8E-07 1.7E-11 84.7 18.0 191 156-353 18-238 (365)
55 PRK08691 DNA polymerase III su 98.7 2.1E-07 4.7E-12 93.8 14.2 191 155-354 14-221 (709)
56 PRK14958 DNA polymerase III su 98.7 3E-07 6.6E-12 91.3 15.2 192 155-353 14-220 (509)
57 PF13191 AAA_16: AAA ATPase do 98.7 7.2E-08 1.6E-12 83.1 9.5 48 158-205 1-51 (185)
58 TIGR00678 holB DNA polymerase 98.7 7.6E-07 1.6E-11 77.2 15.4 159 168-349 3-187 (188)
59 PRK05642 DNA replication initi 98.7 6E-07 1.3E-11 80.6 15.2 152 179-357 46-212 (234)
60 TIGR02881 spore_V_K stage V sp 98.7 2.5E-07 5.3E-12 84.6 12.8 133 177-325 41-192 (261)
61 PRK07764 DNA polymerase III su 98.7 4.6E-07 9.9E-12 94.5 16.2 186 156-350 14-218 (824)
62 PRK14954 DNA polymerase III su 98.7 4.8E-07 1E-11 91.5 15.8 194 156-354 15-230 (620)
63 TIGR01242 26Sp45 26S proteasom 98.7 4.9E-07 1.1E-11 86.7 15.1 201 155-379 120-362 (364)
64 PRK07940 DNA polymerase III su 98.7 1.2E-06 2.7E-11 84.1 17.6 170 157-351 5-211 (394)
65 PRK14969 DNA polymerase III su 98.7 5E-07 1.1E-11 90.3 15.3 178 156-353 15-221 (527)
66 TIGR03345 VI_ClpV1 type VI sec 98.7 4.2E-07 9E-12 95.7 15.0 182 154-347 184-390 (852)
67 PRK14952 DNA polymerase III su 98.7 8.4E-07 1.8E-11 89.1 16.5 196 156-358 12-225 (584)
68 PRK08903 DnaA regulatory inact 98.7 8.2E-07 1.8E-11 79.4 14.6 163 165-358 28-204 (227)
69 KOG0989 Replication factor C, 98.6 3.3E-07 7.1E-12 82.5 11.5 182 154-346 33-223 (346)
70 PF14516 AAA_35: AAA-like doma 98.6 8E-06 1.7E-10 77.2 21.7 195 159-362 13-248 (331)
71 PRK09111 DNA polymerase III su 98.6 9.2E-07 2E-11 89.3 15.9 197 155-354 22-234 (598)
72 PRK14970 DNA polymerase III su 98.6 1.3E-06 2.9E-11 83.9 16.5 182 156-355 16-212 (367)
73 PRK14959 DNA polymerase III su 98.6 9.4E-07 2E-11 88.7 15.2 195 156-357 15-225 (624)
74 PRK14971 DNA polymerase III su 98.6 1.6E-06 3.4E-11 88.2 16.9 175 156-351 16-220 (614)
75 cd01128 rho_factor Transcripti 98.6 1.7E-07 3.8E-12 84.3 8.4 89 177-269 15-115 (249)
76 PRK14953 DNA polymerase III su 98.6 2.7E-06 5.9E-11 84.1 17.4 181 156-354 15-221 (486)
77 PRK06305 DNA polymerase III su 98.6 2.2E-06 4.8E-11 84.2 16.5 193 156-354 16-224 (451)
78 TIGR02639 ClpA ATP-dependent C 98.6 7.8E-07 1.7E-11 92.8 13.9 159 154-324 179-358 (731)
79 PF00308 Bac_DnaA: Bacterial d 98.6 1.1E-06 2.3E-11 78.1 12.7 160 178-353 34-208 (219)
80 KOG2227 Pre-initiation complex 98.6 6.2E-06 1.4E-10 78.4 17.8 197 156-354 149-373 (529)
81 PRK07133 DNA polymerase III su 98.5 2.4E-06 5.2E-11 87.1 16.1 187 156-354 17-221 (725)
82 PRK14950 DNA polymerase III su 98.5 3.1E-06 6.8E-11 86.0 17.0 193 156-354 15-222 (585)
83 PRK05563 DNA polymerase III su 98.5 4.2E-06 9.1E-11 84.4 17.3 190 155-351 14-218 (559)
84 CHL00181 cbbX CbbX; Provisiona 98.5 6.2E-06 1.3E-10 76.2 16.7 131 178-324 59-209 (287)
85 TIGR00362 DnaA chromosomal rep 98.5 2.1E-06 4.6E-11 83.6 13.8 181 178-380 136-337 (405)
86 PRK14965 DNA polymerase III su 98.5 2.4E-06 5.3E-11 86.4 14.7 195 155-356 14-224 (576)
87 PRK14087 dnaA chromosomal repl 98.5 2.3E-06 5.1E-11 83.9 14.1 164 178-355 141-321 (450)
88 PRK06647 DNA polymerase III su 98.5 5.9E-06 1.3E-10 83.1 17.2 190 156-353 15-220 (563)
89 PRK09376 rho transcription ter 98.5 4.9E-07 1.1E-11 85.3 8.6 90 177-269 168-268 (416)
90 PRK14088 dnaA chromosomal repl 98.5 3.6E-06 7.8E-11 82.5 14.8 154 178-346 130-298 (440)
91 PRK08451 DNA polymerase III su 98.5 8.3E-06 1.8E-10 81.0 17.2 191 155-354 12-219 (535)
92 PRK06620 hypothetical protein; 98.5 7.9E-07 1.7E-11 78.5 9.0 139 179-357 45-193 (214)
93 PHA02544 44 clamp loader, smal 98.5 8.4E-06 1.8E-10 76.7 16.3 169 155-348 19-204 (316)
94 CHL00095 clpC Clp protease ATP 98.5 1.9E-06 4.1E-11 91.1 13.1 180 155-345 177-379 (821)
95 TIGR02880 cbbX_cfxQ probable R 98.4 1E-05 2.2E-10 74.8 16.2 131 179-325 59-209 (284)
96 PRK03992 proteasome-activating 98.4 5.5E-06 1.2E-10 80.0 14.9 204 155-382 129-374 (389)
97 PRK14948 DNA polymerase III su 98.4 9.3E-06 2E-10 82.6 17.1 193 156-353 15-222 (620)
98 TIGR03346 chaperone_ClpB ATP-d 98.4 2E-06 4.4E-11 91.1 12.5 161 154-324 170-349 (852)
99 PRK00149 dnaA chromosomal repl 98.4 2.2E-06 4.8E-11 84.6 12.0 181 178-380 148-349 (450)
100 COG1222 RPT1 ATP-dependent 26S 98.4 2.8E-05 6.1E-10 71.7 16.9 205 150-381 144-393 (406)
101 PRK10865 protein disaggregatio 98.4 1.1E-05 2.5E-10 85.2 16.5 160 154-324 175-354 (857)
102 COG1373 Predicted ATPase (AAA+ 98.4 4.8E-06 1E-10 80.5 12.3 131 163-318 23-161 (398)
103 TIGR00767 rho transcription te 98.4 1.9E-06 4.2E-11 81.7 9.1 90 177-269 167-267 (415)
104 TIGR01241 FtsH_fam ATP-depende 98.3 2.1E-05 4.6E-10 78.6 16.7 202 153-380 51-295 (495)
105 COG3267 ExeA Type II secretory 98.3 0.0001 2.2E-09 65.2 18.4 175 175-354 48-246 (269)
106 PRK14086 dnaA chromosomal repl 98.3 1.1E-05 2.4E-10 80.8 13.2 152 179-346 315-481 (617)
107 PF05621 TniB: Bacterial TniB 98.3 6.7E-05 1.5E-09 68.5 16.6 190 163-354 43-262 (302)
108 PRK11034 clpA ATP-dependent Cl 98.3 6.5E-06 1.4E-10 85.3 11.3 160 154-324 183-362 (758)
109 TIGR03689 pup_AAA proteasome A 98.2 1.3E-05 2.9E-10 79.0 12.7 163 152-326 177-380 (512)
110 PF00004 AAA: ATPase family as 98.2 1.3E-05 2.8E-10 64.7 10.4 23 181-203 1-23 (132)
111 PTZ00361 26 proteosome regulat 98.2 1.4E-05 3.1E-10 77.7 12.3 203 152-380 178-424 (438)
112 COG0542 clpA ATP-binding subun 98.2 0.00053 1.1E-08 70.4 23.7 190 159-358 493-748 (786)
113 PF05673 DUF815: Protein of un 98.2 0.00013 2.8E-09 64.6 17.0 116 156-296 26-152 (249)
114 PTZ00454 26S protease regulato 98.2 2.9E-05 6.2E-10 75.0 14.1 203 152-380 140-386 (398)
115 PRK07399 DNA polymerase III su 98.2 7.7E-05 1.7E-09 69.8 16.5 192 157-354 4-222 (314)
116 KOG1514 Origin recognition com 98.2 0.00011 2.3E-09 73.4 17.6 193 158-357 397-625 (767)
117 CHL00176 ftsH cell division pr 98.2 3.2E-05 7E-10 78.8 14.4 167 157-346 183-387 (638)
118 PRK11331 5-methylcytosine-spec 98.2 1.6E-05 3.4E-10 76.8 10.8 105 158-269 176-284 (459)
119 TIGR00602 rad24 checkpoint pro 98.1 1.9E-05 4.1E-10 80.0 11.4 50 154-203 81-135 (637)
120 smart00382 AAA ATPases associa 98.1 1.5E-05 3.2E-10 64.7 8.8 88 178-270 2-91 (148)
121 PRK10536 hypothetical protein; 98.1 3.7E-05 8.1E-10 68.8 11.8 46 154-201 52-97 (262)
122 PRK05707 DNA polymerase III su 98.1 0.00012 2.6E-09 68.9 15.5 93 257-353 106-203 (328)
123 KOG0741 AAA+-type ATPase [Post 98.1 6.1E-05 1.3E-09 72.7 13.2 159 177-359 537-718 (744)
124 PRK12422 chromosomal replicati 98.1 6.9E-05 1.5E-09 73.5 13.8 149 178-344 141-304 (445)
125 CHL00195 ycf46 Ycf46; Provisio 98.1 9.4E-05 2E-09 73.1 14.2 174 156-349 227-431 (489)
126 KOG2543 Origin recognition com 98.0 0.00012 2.7E-09 68.1 13.8 158 157-324 6-193 (438)
127 KOG0733 Nuclear AAA ATPase (VC 98.0 0.00011 2.3E-09 72.3 13.9 149 156-324 189-374 (802)
128 TIGR02639 ClpA ATP-dependent C 98.0 7.1E-05 1.5E-09 78.3 13.5 156 159-324 456-662 (731)
129 KOG0743 AAA+-type ATPase [Post 98.0 0.0029 6.3E-08 60.6 22.5 165 164-360 212-417 (457)
130 COG0466 Lon ATP-dependent Lon 98.0 0.00013 2.8E-09 73.2 14.0 151 158-324 324-508 (782)
131 TIGR02902 spore_lonB ATP-depen 98.0 7.8E-05 1.7E-09 74.9 12.6 48 156-203 64-111 (531)
132 COG2812 DnaX DNA polymerase II 98.0 3.6E-05 7.9E-10 75.6 9.9 185 155-347 14-214 (515)
133 PRK12608 transcription termina 98.0 6.8E-05 1.5E-09 70.8 10.7 100 167-268 121-231 (380)
134 PRK08769 DNA polymerase III su 98.0 0.00061 1.3E-08 63.7 17.0 174 164-353 11-208 (319)
135 PRK08058 DNA polymerase III su 98.0 0.00051 1.1E-08 64.9 16.7 158 159-323 7-181 (329)
136 PHA00729 NTP-binding motif con 97.9 0.0003 6.5E-09 62.0 13.7 36 168-203 7-42 (226)
137 COG0593 DnaA ATPase involved i 97.9 0.00022 4.9E-09 68.1 13.8 131 177-324 112-257 (408)
138 COG3903 Predicted ATPase [Gene 97.9 1E-05 2.2E-10 76.0 4.6 175 177-361 13-197 (414)
139 KOG0739 AAA+-type ATPase [Post 97.9 0.014 3E-07 53.0 23.7 169 158-347 134-335 (439)
140 PRK08181 transposase; Validate 97.9 0.00031 6.6E-09 64.1 13.0 78 171-268 101-178 (269)
141 TIGR01243 CDC48 AAA family ATP 97.9 0.00049 1.1E-08 72.2 16.2 173 155-348 176-382 (733)
142 TIGR00763 lon ATP-dependent pr 97.8 0.00019 4.1E-09 75.6 13.1 151 159-324 322-505 (775)
143 TIGR02640 gas_vesic_GvpN gas v 97.8 0.00071 1.5E-08 61.8 15.2 151 164-325 9-199 (262)
144 PF04665 Pox_A32: Poxvirus A32 97.8 0.00043 9.4E-09 61.7 13.2 141 179-324 14-170 (241)
145 PF10443 RNA12: RNA12 protein; 97.8 0.0022 4.9E-08 61.3 18.7 188 162-361 1-286 (431)
146 PRK10787 DNA-binding ATP-depen 97.8 0.0001 2.3E-09 77.0 10.7 155 158-324 323-506 (784)
147 TIGR01243 CDC48 AAA family ATP 97.8 0.00057 1.2E-08 71.8 16.2 169 156-348 452-658 (733)
148 PRK06090 DNA polymerase III su 97.8 0.0038 8.1E-08 58.4 19.7 166 165-353 11-201 (319)
149 KOG0735 AAA+-type ATPase [Post 97.8 0.00025 5.5E-09 70.9 12.3 151 178-346 431-608 (952)
150 KOG2035 Replication factor C, 97.8 0.001 2.3E-08 59.5 14.8 209 158-381 14-259 (351)
151 PF13177 DNA_pol3_delta2: DNA 97.8 0.00042 9E-09 58.4 11.9 137 161-312 1-162 (162)
152 PLN00020 ribulose bisphosphate 97.8 0.0011 2.4E-08 62.3 15.4 29 176-204 146-174 (413)
153 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00033 7.3E-09 74.1 13.5 193 158-357 567-823 (852)
154 PRK08118 topology modulation p 97.8 2.3E-05 5E-10 66.4 4.0 35 179-215 2-37 (167)
155 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00016 3.5E-09 76.9 11.1 160 158-324 566-776 (852)
156 KOG2004 Mitochondrial ATP-depe 97.8 0.0031 6.7E-08 63.5 18.8 151 158-324 412-596 (906)
157 PRK10865 protein disaggregatio 97.7 0.00036 7.8E-09 74.0 13.2 160 158-324 569-779 (857)
158 PRK08116 hypothetical protein; 97.7 0.00011 2.3E-09 67.3 8.0 102 179-295 115-221 (268)
159 PF03215 Rad17: Rad17 cell cyc 97.7 0.00036 7.8E-09 69.5 12.2 187 159-354 21-265 (519)
160 KOG2228 Origin recognition com 97.7 0.00081 1.8E-08 61.8 12.8 165 156-324 23-219 (408)
161 PRK11034 clpA ATP-dependent Cl 97.7 0.0003 6.5E-09 73.2 11.4 156 159-324 460-666 (758)
162 COG0542 clpA ATP-binding subun 97.7 0.00021 4.5E-09 73.3 10.0 160 153-324 166-346 (786)
163 PRK06871 DNA polymerase III su 97.7 0.0041 8.8E-08 58.3 17.8 173 165-350 10-200 (325)
164 COG1223 Predicted ATPase (AAA+ 97.7 0.00099 2.1E-08 59.1 12.3 171 156-347 120-319 (368)
165 PRK06835 DNA replication prote 97.7 0.0022 4.8E-08 60.3 15.6 39 179-221 184-222 (329)
166 KOG0733 Nuclear AAA ATPase (VC 97.7 0.0009 1.9E-08 66.0 13.2 149 177-347 544-718 (802)
167 PF07693 KAP_NTPase: KAP famil 97.7 0.0051 1.1E-07 57.9 18.4 42 164-205 3-47 (325)
168 COG1484 DnaC DNA replication p 97.7 0.0003 6.6E-09 63.8 9.5 75 177-268 104-178 (254)
169 PRK04132 replication factor C 97.6 0.0014 2.9E-08 68.7 15.3 156 183-355 569-733 (846)
170 PF02562 PhoH: PhoH-like prote 97.6 0.00027 5.9E-09 61.5 8.3 126 164-296 7-157 (205)
171 CHL00095 clpC Clp protease ATP 97.6 0.00046 1E-08 73.2 11.7 159 158-324 510-732 (821)
172 KOG0731 AAA+-type ATPase conta 97.6 0.0015 3.3E-08 66.7 14.6 171 158-351 312-522 (774)
173 PRK07261 topology modulation p 97.6 0.00036 7.8E-09 59.4 8.2 24 180-203 2-25 (171)
174 KOG0991 Replication factor C, 97.5 0.00024 5.2E-09 61.9 6.8 49 156-204 26-74 (333)
175 KOG0730 AAA+-type ATPase [Post 97.5 0.0023 5E-08 63.8 14.4 153 155-327 432-618 (693)
176 PRK07993 DNA polymerase III su 97.5 0.0071 1.5E-07 57.1 17.3 173 165-350 10-201 (334)
177 PRK06964 DNA polymerase III su 97.5 0.0087 1.9E-07 56.5 17.8 87 257-351 132-223 (342)
178 COG0470 HolB ATPase involved i 97.5 0.0013 2.8E-08 61.9 12.5 136 159-313 3-170 (325)
179 PRK09183 transposase/IS protei 97.5 0.0016 3.5E-08 59.3 12.5 26 178-203 102-127 (259)
180 PF00448 SRP54: SRP54-type pro 97.5 0.00077 1.7E-08 58.6 9.8 84 178-266 1-92 (196)
181 KOG0736 Peroxisome assembly fa 97.5 0.011 2.4E-07 60.0 18.7 147 156-322 671-854 (953)
182 PF13207 AAA_17: AAA domain; P 97.5 9.3E-05 2E-09 58.9 3.5 24 180-203 1-24 (121)
183 KOG0734 AAA+-type ATPase conta 97.5 0.0019 4E-08 62.9 12.7 42 163-204 313-363 (752)
184 smart00763 AAA_PrkA PrkA AAA d 97.5 0.00017 3.7E-09 67.8 5.7 47 158-204 52-104 (361)
185 cd01131 PilT Pilus retraction 97.5 0.00023 5E-09 62.1 6.1 114 179-301 2-115 (198)
186 PRK06526 transposase; Provisio 97.5 0.00019 4.1E-09 65.1 5.5 27 178-204 98-124 (254)
187 KOG0744 AAA+-type ATPase [Post 97.5 0.00036 7.9E-09 63.6 7.1 138 178-324 177-340 (423)
188 cd01133 F1-ATPase_beta F1 ATP 97.5 0.00066 1.4E-08 61.7 8.8 90 177-269 68-175 (274)
189 COG0464 SpoVK ATPases of the A 97.5 0.0043 9.2E-08 62.2 15.6 149 177-345 275-445 (494)
190 PRK12377 putative replication 97.4 0.0008 1.7E-08 60.6 8.7 73 178-267 101-173 (248)
191 PRK08939 primosomal protein Dn 97.4 0.0013 2.7E-08 61.4 9.9 117 161-295 135-261 (306)
192 PRK10733 hflB ATP-dependent me 97.4 0.0053 1.1E-07 63.3 15.2 128 179-326 186-337 (644)
193 cd01120 RecA-like_NTPases RecA 97.4 0.002 4.2E-08 53.7 10.2 36 180-219 1-36 (165)
194 COG2884 FtsE Predicted ATPase 97.3 0.0023 5E-08 54.3 9.9 56 245-302 145-204 (223)
195 COG2607 Predicted ATPase (AAA+ 97.3 0.0029 6.2E-08 55.6 10.8 98 157-279 60-164 (287)
196 PRK04296 thymidine kinase; Pro 97.3 0.00041 8.9E-09 60.1 5.7 109 179-296 3-117 (190)
197 PRK06921 hypothetical protein; 97.3 0.00092 2E-08 61.1 8.3 40 177-219 116-155 (266)
198 KOG0728 26S proteasome regulat 97.3 0.0098 2.1E-07 52.6 14.0 176 161-356 151-366 (404)
199 PRK06696 uridine kinase; Valid 97.3 0.00045 9.7E-09 61.5 6.0 44 161-204 2-48 (223)
200 PRK14722 flhF flagellar biosyn 97.3 0.0014 3.1E-08 62.3 9.4 85 177-267 136-225 (374)
201 TIGR01069 mutS2 MutS2 family p 97.3 0.0005 1.1E-08 71.9 6.7 182 177-382 321-522 (771)
202 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.0036 7.8E-08 53.7 10.5 24 180-203 1-24 (183)
203 PF01695 IstB_IS21: IstB-like 97.2 0.0015 3.3E-08 55.9 7.9 74 177-268 46-119 (178)
204 COG0563 Adk Adenylate kinase a 97.2 0.00073 1.6E-08 57.8 5.9 88 180-269 2-89 (178)
205 TIGR03499 FlhF flagellar biosy 97.2 0.0029 6.3E-08 58.4 10.1 40 177-219 193-233 (282)
206 TIGR02237 recomb_radB DNA repa 97.2 0.004 8.6E-08 54.7 10.5 85 177-267 11-107 (209)
207 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.006 1.3E-07 54.8 11.6 86 177-268 20-137 (237)
208 PRK15455 PrkA family serine pr 97.1 0.00069 1.5E-08 67.2 5.7 49 156-204 75-129 (644)
209 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0039 8.4E-08 55.9 10.3 89 177-268 18-126 (235)
210 PRK08699 DNA polymerase III su 97.1 0.0069 1.5E-07 57.0 12.2 86 257-350 113-203 (325)
211 PF00006 ATP-synt_ab: ATP synt 97.1 0.0026 5.6E-08 56.1 8.6 85 178-268 15-116 (215)
212 TIGR02858 spore_III_AA stage I 97.1 0.0031 6.7E-08 57.6 9.4 114 175-298 108-232 (270)
213 PF13481 AAA_25: AAA domain; P 97.1 0.0041 8.9E-08 53.8 9.9 52 179-230 33-91 (193)
214 COG0465 HflB ATP-dependent Zn 97.1 0.006 1.3E-07 61.2 12.0 169 157-349 150-357 (596)
215 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.00096 2.1E-08 58.9 5.9 24 178-201 29-52 (213)
216 PRK07952 DNA replication prote 97.1 0.0041 8.9E-08 55.9 9.9 89 165-269 84-174 (244)
217 PRK06547 hypothetical protein; 97.1 0.00087 1.9E-08 57.0 5.2 36 168-203 5-40 (172)
218 PRK09361 radB DNA repair and r 97.1 0.0069 1.5E-07 53.9 11.3 84 177-267 22-117 (225)
219 PF10236 DAP3: Mitochondrial r 97.1 0.087 1.9E-06 49.3 19.0 46 305-350 258-306 (309)
220 KOG1969 DNA replication checkp 97.1 0.0012 2.7E-08 66.3 6.9 72 177-269 325-399 (877)
221 PRK00771 signal recognition pa 97.1 0.0045 9.8E-08 60.4 10.7 54 177-234 94-151 (437)
222 COG1875 NYN ribonuclease and A 97.1 0.0026 5.7E-08 59.2 8.5 134 158-297 225-390 (436)
223 KOG0735 AAA+-type ATPase [Post 97.1 0.031 6.8E-07 56.5 16.2 167 159-349 669-872 (952)
224 cd01394 radB RadB. The archaea 97.0 0.0087 1.9E-07 53.0 11.5 85 177-267 18-113 (218)
225 TIGR02974 phageshock_pspF psp 97.0 0.012 2.6E-07 55.5 12.8 44 160-203 2-47 (329)
226 COG1419 FlhF Flagellar GTP-bin 97.0 0.0088 1.9E-07 56.9 11.6 96 165-267 186-291 (407)
227 PRK12597 F0F1 ATP synthase sub 97.0 0.0046 9.9E-08 60.5 10.1 88 177-267 142-247 (461)
228 PRK08533 flagellar accessory p 97.0 0.0075 1.6E-07 53.9 10.6 47 178-228 24-71 (230)
229 PRK08972 fliI flagellum-specif 97.0 0.0034 7.4E-08 60.8 8.9 86 177-268 161-263 (444)
230 cd01135 V_A-ATPase_B V/A-type 97.0 0.004 8.7E-08 56.6 8.7 91 177-269 68-178 (276)
231 PRK05541 adenylylsulfate kinas 97.0 0.0022 4.8E-08 54.7 6.9 28 177-204 6-33 (176)
232 cd01124 KaiC KaiC is a circadi 97.0 0.0049 1.1E-07 52.9 9.1 45 180-228 1-46 (187)
233 PF05659 RPW8: Arabidopsis bro 97.0 0.028 6E-07 46.3 12.9 113 1-130 1-113 (147)
234 PRK12727 flagellar biosynthesi 97.0 0.0041 8.9E-08 61.5 9.3 27 178-204 350-376 (559)
235 PRK06067 flagellar accessory p 97.0 0.011 2.4E-07 53.0 11.5 85 177-267 24-130 (234)
236 KOG1970 Checkpoint RAD17-RFC c 97.0 0.014 3E-07 57.3 12.5 48 163-216 88-142 (634)
237 TIGR01420 pilT_fam pilus retra 97.0 0.0022 4.9E-08 60.9 7.3 113 177-299 121-234 (343)
238 PF00485 PRK: Phosphoribulokin 97.0 0.00072 1.6E-08 58.8 3.6 25 180-204 1-25 (194)
239 PRK14974 cell division protein 96.9 0.018 3.8E-07 54.4 13.1 54 177-234 139-196 (336)
240 COG1618 Predicted nucleotide k 96.9 0.0012 2.6E-08 54.4 4.5 30 179-209 6-35 (179)
241 PRK08927 fliI flagellum-specif 96.9 0.0041 8.9E-08 60.4 8.9 86 177-268 157-259 (442)
242 cd00983 recA RecA is a bacter 96.9 0.031 6.8E-07 52.3 14.3 83 177-267 54-143 (325)
243 PRK04040 adenylate kinase; Pro 96.9 0.003 6.5E-08 54.6 7.2 26 178-203 2-27 (188)
244 PRK08149 ATP synthase SpaL; Va 96.9 0.0031 6.7E-08 61.1 7.9 86 177-268 150-252 (428)
245 cd03115 SRP The signal recogni 96.9 0.0077 1.7E-07 51.2 9.6 25 180-204 2-26 (173)
246 cd03214 ABC_Iron-Siderophores_ 96.9 0.0046 1E-07 53.0 8.3 116 177-298 24-161 (180)
247 PRK07667 uridine kinase; Provi 96.9 0.0016 3.5E-08 56.6 5.3 38 167-204 4-43 (193)
248 PRK14721 flhF flagellar biosyn 96.9 0.0071 1.5E-07 58.6 10.2 26 177-202 190-215 (420)
249 PRK09270 nucleoside triphospha 96.9 0.0017 3.6E-08 58.1 5.5 29 176-204 31-59 (229)
250 KOG0652 26S proteasome regulat 96.9 0.045 9.7E-07 48.8 14.1 56 148-203 162-230 (424)
251 PF13671 AAA_33: AAA domain; P 96.9 0.00087 1.9E-08 54.9 3.4 24 180-203 1-24 (143)
252 PRK15429 formate hydrogenlyase 96.9 0.018 3.8E-07 60.2 13.8 48 156-203 375-424 (686)
253 cd03216 ABC_Carb_Monos_I This 96.9 0.0026 5.6E-08 53.7 6.2 113 177-299 25-146 (163)
254 PRK12723 flagellar biosynthesi 96.9 0.0065 1.4E-07 58.4 9.6 87 177-267 173-264 (388)
255 PRK00409 recombination and DNA 96.9 0.001 2.2E-08 69.9 4.5 181 176-383 325-528 (782)
256 TIGR01817 nifA Nif-specific re 96.9 0.0051 1.1E-07 62.3 9.4 49 155-203 194-244 (534)
257 PF13238 AAA_18: AAA domain; P 96.9 0.00091 2E-08 53.5 3.3 22 181-202 1-22 (129)
258 PRK05480 uridine/cytidine kina 96.9 0.0011 2.4E-08 58.3 4.1 27 176-202 4-30 (209)
259 PF06745 KaiC: KaiC; InterPro 96.9 0.0072 1.6E-07 53.8 9.4 85 177-267 18-125 (226)
260 COG1102 Cmk Cytidylate kinase 96.9 0.0017 3.6E-08 53.5 4.7 45 180-236 2-46 (179)
261 PRK08233 hypothetical protein; 96.9 0.001 2.2E-08 57.0 3.7 26 178-203 3-28 (182)
262 PTZ00301 uridine kinase; Provi 96.9 0.0011 2.4E-08 58.3 3.9 26 178-203 3-28 (210)
263 TIGR00235 udk uridine kinase. 96.8 0.0012 2.5E-08 58.1 4.1 28 176-203 4-31 (207)
264 PRK12726 flagellar biosynthesi 96.8 0.0081 1.8E-07 57.1 9.8 86 177-267 205-295 (407)
265 cd01121 Sms Sms (bacterial rad 96.8 0.0088 1.9E-07 57.3 10.2 85 178-268 82-169 (372)
266 PRK10867 signal recognition pa 96.8 0.01 2.2E-07 57.9 10.8 28 177-204 99-126 (433)
267 TIGR01041 ATP_syn_B_arch ATP s 96.8 0.0082 1.8E-07 58.8 10.1 91 178-268 141-249 (458)
268 PTZ00494 tuzin-like protein; P 96.8 0.15 3.2E-06 49.4 17.8 160 156-324 370-544 (664)
269 COG4088 Predicted nucleotide k 96.8 0.0065 1.4E-07 52.2 8.1 27 179-205 2-28 (261)
270 PRK04328 hypothetical protein; 96.8 0.015 3.3E-07 52.6 11.2 85 177-267 22-138 (249)
271 cd02019 NK Nucleoside/nucleoti 96.8 0.0012 2.6E-08 46.9 3.2 23 180-202 1-23 (69)
272 KOG0729 26S proteasome regulat 96.8 0.0059 1.3E-07 54.4 8.0 98 151-268 171-281 (435)
273 CHL00206 ycf2 Ycf2; Provisiona 96.8 0.016 3.5E-07 64.7 12.9 27 177-203 1629-1655(2281)
274 PRK11889 flhF flagellar biosyn 96.8 0.0095 2.1E-07 56.9 9.8 28 177-204 240-267 (436)
275 TIGR02012 tigrfam_recA protein 96.8 0.0098 2.1E-07 55.6 9.9 83 177-267 54-143 (321)
276 PRK12678 transcription termina 96.8 0.0058 1.3E-07 60.7 8.5 88 178-268 416-514 (672)
277 PRK11608 pspF phage shock prot 96.8 0.005 1.1E-07 58.1 8.0 45 158-202 7-53 (326)
278 TIGR02655 circ_KaiC circadian 96.8 0.014 2.9E-07 58.3 11.4 86 177-268 262-364 (484)
279 TIGR00959 ffh signal recogniti 96.8 0.014 3.1E-07 56.8 11.2 27 177-203 98-124 (428)
280 PRK09280 F0F1 ATP synthase sub 96.8 0.0069 1.5E-07 59.2 8.9 89 177-268 143-249 (463)
281 PRK14723 flhF flagellar biosyn 96.7 0.013 2.8E-07 60.7 11.2 26 178-203 185-210 (767)
282 COG1066 Sms Predicted ATP-depe 96.7 0.015 3.3E-07 55.1 10.7 86 177-268 92-179 (456)
283 PRK06762 hypothetical protein; 96.7 0.0015 3.2E-08 55.2 3.8 25 178-202 2-26 (166)
284 cd01393 recA_like RecA is a b 96.7 0.022 4.9E-07 50.6 11.6 89 177-267 18-124 (226)
285 cd02027 APSK Adenosine 5'-phos 96.7 0.022 4.7E-07 47.2 10.7 24 180-203 1-24 (149)
286 PRK06995 flhF flagellar biosyn 96.7 0.009 1.9E-07 58.9 9.6 27 178-204 256-282 (484)
287 PRK06936 type III secretion sy 96.7 0.0076 1.6E-07 58.5 8.8 86 177-268 161-263 (439)
288 PRK13531 regulatory ATPase Rav 96.7 0.0023 4.9E-08 62.7 5.3 50 158-209 21-70 (498)
289 PF00154 RecA: recA bacterial 96.7 0.11 2.5E-06 48.4 16.2 86 177-269 52-143 (322)
290 PRK09354 recA recombinase A; P 96.7 0.013 2.8E-07 55.3 10.1 83 177-267 59-148 (349)
291 TIGR03305 alt_F1F0_F1_bet alte 96.7 0.011 2.3E-07 57.6 9.8 89 177-268 137-243 (449)
292 PRK15424 propionate catabolism 96.7 0.022 4.8E-07 57.2 12.2 46 156-201 218-265 (538)
293 TIGR00064 ftsY signal recognit 96.7 0.021 4.4E-07 52.4 11.0 39 177-219 71-109 (272)
294 COG4608 AppF ABC-type oligopep 96.7 0.0094 2E-07 53.6 8.5 119 177-302 38-177 (268)
295 cd00267 ABC_ATPase ABC (ATP-bi 96.7 0.0077 1.7E-07 50.3 7.6 121 178-307 25-152 (157)
296 PRK05703 flhF flagellar biosyn 96.7 0.012 2.6E-07 57.5 9.9 82 178-266 221-308 (424)
297 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0019 4.1E-08 55.6 3.8 27 177-203 2-28 (188)
298 PRK05688 fliI flagellum-specif 96.6 0.008 1.7E-07 58.6 8.4 86 177-268 167-269 (451)
299 cd01136 ATPase_flagellum-secre 96.6 0.0081 1.7E-07 56.3 8.1 86 177-268 68-170 (326)
300 PRK12724 flagellar biosynthesi 96.6 0.013 2.9E-07 56.5 9.7 26 178-203 223-248 (432)
301 PRK00279 adk adenylate kinase; 96.6 0.0099 2.1E-07 52.5 8.4 24 180-203 2-25 (215)
302 PRK03839 putative kinase; Prov 96.6 0.0019 4E-08 55.4 3.6 24 180-203 2-25 (180)
303 PRK14532 adenylate kinase; Pro 96.6 0.013 2.9E-07 50.4 9.0 23 181-203 3-25 (188)
304 COG0194 Gmk Guanylate kinase [ 96.6 0.0097 2.1E-07 50.5 7.7 25 178-202 4-28 (191)
305 KOG3347 Predicted nucleotide k 96.6 0.0059 1.3E-07 49.6 6.1 120 178-320 7-129 (176)
306 cd03243 ABC_MutS_homologs The 96.6 0.0023 5.1E-08 56.0 4.2 23 179-201 30-52 (202)
307 KOG0737 AAA+-type ATPase [Post 96.6 0.019 4E-07 53.7 10.1 31 177-209 126-156 (386)
308 PRK14528 adenylate kinase; Pro 96.6 0.011 2.5E-07 50.9 8.4 25 179-203 2-26 (186)
309 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.0058 1.3E-07 54.8 6.7 24 178-201 30-53 (254)
310 PF00910 RNA_helicase: RNA hel 96.6 0.0017 3.7E-08 50.6 2.9 24 181-204 1-24 (107)
311 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.015 3.2E-07 48.0 8.6 27 177-203 25-51 (144)
312 COG3854 SpoIIIAA ncharacterize 96.6 0.012 2.6E-07 51.5 8.2 122 169-300 128-258 (308)
313 PTZ00088 adenylate kinase 1; P 96.6 0.011 2.4E-07 52.7 8.4 24 180-203 8-31 (229)
314 cd03285 ABC_MSH2_euk MutS2 hom 96.6 0.0027 5.8E-08 56.5 4.4 170 177-360 29-220 (222)
315 COG0572 Udk Uridine kinase [Nu 96.6 0.0023 5E-08 55.9 3.8 28 177-204 7-34 (218)
316 PRK05922 type III secretion sy 96.6 0.0099 2.2E-07 57.7 8.5 86 177-268 156-258 (434)
317 PF01583 APS_kinase: Adenylyls 96.6 0.0031 6.7E-08 52.4 4.4 28 178-205 2-29 (156)
318 PRK07594 type III secretion sy 96.5 0.01 2.3E-07 57.6 8.5 86 177-268 154-256 (433)
319 cd01132 F1_ATPase_alpha F1 ATP 96.5 0.015 3.2E-07 53.0 8.9 95 177-276 68-181 (274)
320 TIGR03496 FliI_clade1 flagella 96.5 0.011 2.5E-07 57.2 8.7 86 177-268 136-238 (411)
321 PF00406 ADK: Adenylate kinase 96.5 0.0049 1.1E-07 51.1 5.5 74 183-269 1-85 (151)
322 PRK13765 ATP-dependent proteas 96.5 0.0053 1.1E-07 62.7 6.6 74 156-234 30-105 (637)
323 cd03228 ABCC_MRP_Like The MRP 96.5 0.015 3.2E-07 49.4 8.5 27 177-203 27-53 (171)
324 PF13245 AAA_19: Part of AAA d 96.5 0.0098 2.1E-07 43.1 6.3 27 177-203 9-36 (76)
325 TIGR02329 propionate_PrpR prop 96.5 0.026 5.7E-07 56.6 11.4 47 156-202 211-259 (526)
326 TIGR02236 recomb_radA DNA repa 96.5 0.04 8.6E-07 51.7 12.1 90 177-267 94-202 (310)
327 PRK07196 fliI flagellum-specif 96.5 0.011 2.3E-07 57.5 8.3 86 177-268 154-256 (434)
328 PRK07132 DNA polymerase III su 96.5 0.19 4E-06 46.7 16.2 139 166-323 5-161 (299)
329 TIGR03574 selen_PSTK L-seryl-t 96.5 0.0084 1.8E-07 54.3 7.2 25 180-204 1-25 (249)
330 PRK06002 fliI flagellum-specif 96.5 0.01 2.2E-07 57.8 8.1 87 177-268 164-265 (450)
331 TIGR01039 atpD ATP synthase, F 96.5 0.021 4.5E-07 55.7 10.2 89 177-268 142-248 (461)
332 cd01134 V_A-ATPase_A V/A-type 96.5 0.018 4E-07 54.0 9.4 85 177-267 156-264 (369)
333 PF08423 Rad51: Rad51; InterP 96.5 0.073 1.6E-06 48.4 13.2 88 178-267 38-143 (256)
334 PRK11823 DNA repair protein Ra 96.5 0.019 4.1E-07 56.6 10.0 84 178-267 80-166 (446)
335 TIGR03881 KaiC_arch_4 KaiC dom 96.5 0.054 1.2E-06 48.3 12.2 47 177-227 19-66 (229)
336 PRK05342 clpX ATP-dependent pr 96.5 0.0085 1.8E-07 58.2 7.4 45 159-203 73-133 (412)
337 PF07728 AAA_5: AAA domain (dy 96.5 0.0025 5.3E-08 52.1 3.3 23 181-203 2-24 (139)
338 cd02023 UMPK Uridine monophosp 96.5 0.0023 4.9E-08 55.8 3.2 23 180-202 1-23 (198)
339 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0056 1.2E-07 49.5 5.2 27 178-204 22-48 (133)
340 PRK00131 aroK shikimate kinase 96.5 0.003 6.4E-08 53.6 3.9 26 178-203 4-29 (175)
341 TIGR00554 panK_bact pantothena 96.5 0.005 1.1E-07 56.8 5.5 28 176-203 60-87 (290)
342 PRK05022 anaerobic nitric oxid 96.5 0.048 1E-06 54.8 13.0 47 157-203 187-235 (509)
343 TIGR03498 FliI_clade3 flagella 96.5 0.014 3.1E-07 56.5 8.9 86 177-268 139-241 (418)
344 TIGR02322 phosphon_PhnN phosph 96.4 0.0027 5.9E-08 54.3 3.5 25 179-203 2-26 (179)
345 cd02025 PanK Pantothenate kina 96.4 0.0023 5.1E-08 56.8 3.2 24 180-203 1-24 (220)
346 CHL00081 chlI Mg-protoporyphyr 96.4 0.0042 9.1E-08 58.7 5.0 48 156-203 16-63 (350)
347 TIGR01351 adk adenylate kinase 96.4 0.015 3.3E-07 51.2 8.2 23 181-203 2-24 (210)
348 PRK00625 shikimate kinase; Pro 96.4 0.0028 6E-08 54.0 3.4 24 180-203 2-25 (173)
349 TIGR00764 lon_rel lon-related 96.4 0.0088 1.9E-07 61.2 7.5 72 157-233 18-91 (608)
350 PF08433 KTI12: Chromatin asso 96.4 0.0052 1.1E-07 56.2 5.3 26 179-204 2-27 (270)
351 PRK06851 hypothetical protein; 96.4 0.054 1.2E-06 51.6 12.3 45 175-222 211-255 (367)
352 COG0467 RAD55 RecA-superfamily 96.4 0.0095 2.1E-07 54.3 7.1 86 176-267 21-134 (260)
353 cd00984 DnaB_C DnaB helicase C 96.4 0.039 8.5E-07 49.5 11.1 50 178-230 13-63 (242)
354 PRK04301 radA DNA repair and r 96.4 0.048 1E-06 51.3 11.9 90 177-267 101-208 (317)
355 PRK08472 fliI flagellum-specif 96.4 0.019 4E-07 55.9 9.1 87 176-268 155-257 (434)
356 PF03205 MobB: Molybdopterin g 96.4 0.0039 8.5E-08 51.1 3.9 27 179-205 1-27 (140)
357 PF13086 AAA_11: AAA domain; P 96.4 0.016 3.4E-07 51.4 8.1 62 167-230 8-75 (236)
358 TIGR02030 BchI-ChlI magnesium 96.4 0.0067 1.5E-07 57.3 5.8 47 156-202 3-49 (337)
359 PF03969 AFG1_ATPase: AFG1-lik 96.4 0.0068 1.5E-07 57.8 5.9 74 177-268 61-138 (362)
360 PRK10751 molybdopterin-guanine 96.3 0.004 8.7E-08 52.7 3.9 28 177-204 5-32 (173)
361 cd00227 CPT Chloramphenicol (C 96.3 0.0038 8.2E-08 53.3 3.8 26 178-203 2-27 (175)
362 PF06309 Torsin: Torsin; Inte 96.3 0.0088 1.9E-07 47.5 5.5 44 159-202 27-77 (127)
363 PRK04196 V-type ATP synthase s 96.3 0.025 5.5E-07 55.5 9.9 91 178-268 143-251 (460)
364 KOG1532 GTPase XAB1, interacts 96.3 0.0049 1.1E-07 55.1 4.4 29 177-205 18-46 (366)
365 PF09848 DUF2075: Uncharacteri 96.3 0.017 3.7E-07 55.2 8.6 49 179-229 2-51 (352)
366 TIGR02238 recomb_DMC1 meiotic 96.3 0.047 1E-06 51.1 11.3 88 177-267 95-201 (313)
367 COG2274 SunT ABC-type bacterio 96.3 0.22 4.8E-06 51.8 17.1 25 177-201 498-522 (709)
368 cd02020 CMPK Cytidine monophos 96.3 0.0032 7E-08 51.7 3.2 24 180-203 1-24 (147)
369 COG1116 TauB ABC-type nitrate/ 96.3 0.0031 6.8E-08 55.9 3.2 24 177-200 28-51 (248)
370 TIGR00416 sms DNA repair prote 96.3 0.024 5.2E-07 55.9 9.7 86 177-268 93-181 (454)
371 COG2019 AdkA Archaeal adenylat 96.3 0.027 5.8E-07 46.8 8.3 25 178-202 4-28 (189)
372 PRK10820 DNA-binding transcrip 96.3 0.086 1.9E-06 53.1 13.7 48 155-202 202-251 (520)
373 cd02028 UMPK_like Uridine mono 96.3 0.0036 7.8E-08 53.7 3.3 24 180-203 1-24 (179)
374 TIGR00390 hslU ATP-dependent p 96.3 0.011 2.4E-07 56.8 6.9 46 159-204 14-73 (441)
375 PLN03187 meiotic recombination 96.3 0.055 1.2E-06 51.2 11.5 88 177-267 125-231 (344)
376 PF00625 Guanylate_kin: Guanyl 96.3 0.0062 1.4E-07 52.3 4.8 38 178-219 2-39 (183)
377 PTZ00185 ATPase alpha subunit; 96.3 0.036 7.8E-07 54.6 10.3 88 178-268 189-300 (574)
378 cd03282 ABC_MSH4_euk MutS4 hom 96.3 0.008 1.7E-07 52.6 5.4 25 177-201 28-52 (204)
379 cd01122 GP4d_helicase GP4d_hel 96.3 0.045 9.7E-07 50.1 10.7 51 178-231 30-81 (271)
380 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.033 7.2E-07 50.7 9.7 39 177-219 35-73 (259)
381 cd02021 GntK Gluconate kinase 96.3 0.0035 7.5E-08 51.9 3.0 23 180-202 1-23 (150)
382 TIGR03263 guanyl_kin guanylate 96.3 0.0034 7.4E-08 53.7 3.0 24 179-202 2-25 (180)
383 PRK00300 gmk guanylate kinase; 96.3 0.004 8.7E-08 54.5 3.5 27 177-203 4-30 (205)
384 CHL00060 atpB ATP synthase CF1 96.2 0.023 5E-07 55.8 9.0 89 177-268 160-273 (494)
385 cd03284 ABC_MutS1 MutS1 homolo 96.2 0.0059 1.3E-07 54.0 4.6 22 179-200 31-52 (216)
386 cd00046 DEXDc DEAD-like helica 96.2 0.017 3.7E-07 46.2 7.1 38 180-219 2-39 (144)
387 cd02024 NRK1 Nicotinamide ribo 96.2 0.0035 7.7E-08 53.9 3.0 23 180-202 1-23 (187)
388 PRK10416 signal recognition pa 96.2 0.053 1.1E-06 50.9 11.1 28 177-204 113-140 (318)
389 PRK06217 hypothetical protein; 96.2 0.0038 8.3E-08 53.7 3.2 24 180-203 3-26 (183)
390 cd03287 ABC_MSH3_euk MutS3 hom 96.2 0.0056 1.2E-07 54.3 4.3 119 177-301 30-160 (222)
391 PF08298 AAA_PrkA: PrkA AAA do 96.2 0.0087 1.9E-07 56.0 5.7 47 158-204 62-114 (358)
392 PRK09099 type III secretion sy 96.2 0.019 4.1E-07 56.0 8.2 86 177-268 162-264 (441)
393 cd01129 PulE-GspE PulE/GspE Th 96.2 0.006 1.3E-07 55.7 4.5 120 166-300 69-189 (264)
394 PRK00889 adenylylsulfate kinas 96.2 0.0055 1.2E-07 52.2 4.1 28 177-204 3-30 (175)
395 PF03193 DUF258: Protein of un 96.2 0.0076 1.7E-07 50.3 4.7 35 165-202 25-59 (161)
396 TIGR03497 FliI_clade2 flagella 96.2 0.018 3.9E-07 55.9 7.9 86 177-268 136-238 (413)
397 cd00544 CobU Adenosylcobinamid 96.2 0.023 5.1E-07 48.1 7.8 80 180-266 1-82 (169)
398 PRK14530 adenylate kinase; Pro 96.2 0.0046 9.9E-08 54.7 3.6 25 179-203 4-28 (215)
399 TIGR03324 alt_F1F0_F1_al alter 96.2 0.028 6E-07 55.4 9.1 87 177-268 161-265 (497)
400 PF05970 PIF1: PIF1-like helic 96.2 0.014 2.9E-07 56.1 7.0 40 165-204 9-48 (364)
401 cd03280 ABC_MutS2 MutS2 homolo 96.2 0.0077 1.7E-07 52.6 4.9 22 178-199 28-49 (200)
402 PRK13949 shikimate kinase; Pro 96.2 0.0048 1E-07 52.3 3.5 25 179-203 2-26 (169)
403 KOG0738 AAA+-type ATPase [Post 96.2 0.15 3.2E-06 48.3 13.3 47 158-204 213-271 (491)
404 cd00071 GMPK Guanosine monopho 96.2 0.004 8.6E-08 50.9 2.8 24 180-203 1-24 (137)
405 PRK14527 adenylate kinase; Pro 96.2 0.0057 1.2E-07 53.0 4.0 27 177-203 5-31 (191)
406 PF03266 NTPase_1: NTPase; In 96.2 0.0053 1.2E-07 52.0 3.6 24 181-204 2-25 (168)
407 PRK07960 fliI flagellum-specif 96.2 0.014 3E-07 56.8 6.9 86 177-268 174-276 (455)
408 PRK10463 hydrogenase nickel in 96.1 0.0098 2.1E-07 54.6 5.5 36 169-204 95-130 (290)
409 PF12775 AAA_7: P-loop contain 96.1 0.0037 8.1E-08 57.3 2.8 36 167-203 23-58 (272)
410 COG1157 FliI Flagellar biosynt 96.1 0.022 4.7E-07 54.2 7.8 85 177-267 162-263 (441)
411 TIGR01313 therm_gnt_kin carboh 96.1 0.0039 8.4E-08 52.4 2.7 23 181-203 1-23 (163)
412 cd00820 PEPCK_HprK Phosphoenol 96.1 0.005 1.1E-07 47.6 3.0 22 178-199 15-36 (107)
413 COG1126 GlnQ ABC-type polar am 96.1 0.0048 1E-07 53.5 3.2 24 177-200 27-50 (240)
414 PRK13947 shikimate kinase; Pro 96.1 0.0049 1.1E-07 52.2 3.3 24 180-203 3-26 (171)
415 TIGR01425 SRP54_euk signal rec 96.1 0.051 1.1E-06 52.8 10.6 28 177-204 99-126 (429)
416 TIGR02546 III_secr_ATP type II 96.1 0.037 8E-07 54.0 9.7 86 177-268 144-246 (422)
417 COG0396 sufC Cysteine desulfur 96.1 0.028 6.2E-07 49.3 7.9 26 177-202 29-54 (251)
418 TIGR00382 clpX endopeptidase C 96.1 0.016 3.5E-07 56.1 7.1 45 159-203 79-141 (413)
419 PTZ00035 Rad51 protein; Provis 96.1 0.088 1.9E-06 49.8 12.0 90 177-268 117-224 (337)
420 PRK14737 gmk guanylate kinase; 96.1 0.0054 1.2E-07 52.9 3.5 26 177-202 3-28 (186)
421 PRK10078 ribose 1,5-bisphospho 96.1 0.0048 1E-07 53.2 3.2 25 179-203 3-27 (186)
422 TIGR01026 fliI_yscN ATPase Fli 96.1 0.019 4.2E-07 56.1 7.7 86 177-268 162-264 (440)
423 PRK14529 adenylate kinase; Pro 96.1 0.02 4.3E-07 50.7 7.1 83 181-269 3-88 (223)
424 TIGR00073 hypB hydrogenase acc 96.1 0.0074 1.6E-07 53.0 4.3 32 172-203 16-47 (207)
425 PF01078 Mg_chelatase: Magnesi 96.1 0.011 2.4E-07 51.3 5.3 44 156-201 2-45 (206)
426 PF08477 Miro: Miro-like prote 96.1 0.0057 1.2E-07 48.2 3.3 23 181-203 2-24 (119)
427 cd00464 SK Shikimate kinase (S 96.1 0.0056 1.2E-07 50.7 3.4 23 181-203 2-24 (154)
428 PRK06820 type III secretion sy 96.1 0.04 8.6E-07 53.7 9.6 85 177-268 162-264 (440)
429 PF06414 Zeta_toxin: Zeta toxi 96.1 0.015 3.3E-07 50.7 6.2 87 175-269 12-104 (199)
430 PRK06793 fliI flagellum-specif 96.0 0.059 1.3E-06 52.4 10.6 87 177-269 155-258 (432)
431 PRK14526 adenylate kinase; Pro 96.0 0.027 5.8E-07 49.6 7.7 23 181-203 3-25 (211)
432 COG1136 SalX ABC-type antimicr 96.0 0.0054 1.2E-07 54.1 3.2 24 177-200 30-53 (226)
433 PRK13407 bchI magnesium chelat 96.0 0.0084 1.8E-07 56.5 4.7 47 156-202 7-53 (334)
434 PRK03846 adenylylsulfate kinas 96.0 0.0079 1.7E-07 52.5 4.2 29 175-203 21-49 (198)
435 COG1124 DppF ABC-type dipeptid 96.0 0.0055 1.2E-07 54.1 3.1 24 177-200 32-55 (252)
436 PRK05057 aroK shikimate kinase 96.0 0.0067 1.5E-07 51.6 3.6 26 178-203 4-29 (172)
437 PRK05201 hslU ATP-dependent pr 96.0 0.019 4.2E-07 55.3 7.0 45 159-203 17-75 (443)
438 TIGR00962 atpA proton transloc 96.0 0.038 8.3E-07 54.8 9.2 87 177-268 160-264 (501)
439 PRK14738 gmk guanylate kinase; 96.0 0.0067 1.5E-07 53.3 3.6 26 176-201 11-36 (206)
440 PRK13975 thymidylate kinase; P 96.0 0.007 1.5E-07 52.5 3.7 26 179-204 3-28 (196)
441 COG0488 Uup ATPase components 96.0 0.066 1.4E-06 53.7 10.9 26 177-202 347-372 (530)
442 KOG0726 26S proteasome regulat 96.0 0.13 2.8E-06 46.8 11.5 99 149-267 177-288 (440)
443 CHL00059 atpA ATP synthase CF1 95.9 0.036 7.8E-07 54.4 8.7 87 177-268 140-244 (485)
444 KOG0742 AAA+-type ATPase [Post 95.9 0.039 8.4E-07 52.3 8.4 128 177-324 383-528 (630)
445 TIGR00176 mobB molybdopterin-g 95.9 0.0078 1.7E-07 50.3 3.5 26 180-205 1-26 (155)
446 PRK13695 putative NTPase; Prov 95.9 0.013 2.8E-07 49.9 4.9 25 180-204 2-26 (174)
447 TIGR00455 apsK adenylylsulfate 95.9 0.096 2.1E-06 44.9 10.4 28 176-203 16-43 (184)
448 PRK07721 fliI flagellum-specif 95.9 0.029 6.4E-07 54.8 7.9 88 176-268 156-259 (438)
449 PLN02200 adenylate kinase fami 95.9 0.0087 1.9E-07 53.6 3.9 27 177-203 42-68 (234)
450 KOG0651 26S proteasome regulat 95.9 0.019 4.1E-07 52.5 5.9 29 177-205 165-193 (388)
451 KOG0727 26S proteasome regulat 95.9 1.3 2.7E-05 39.7 19.3 28 176-203 187-214 (408)
452 COG1428 Deoxynucleoside kinase 95.8 0.0079 1.7E-07 52.0 3.3 26 178-203 4-29 (216)
453 TIGR03880 KaiC_arch_3 KaiC dom 95.8 0.068 1.5E-06 47.5 9.5 48 177-228 15-63 (224)
454 PRK05439 pantothenate kinase; 95.8 0.031 6.8E-07 52.0 7.5 28 176-203 84-111 (311)
455 PF00158 Sigma54_activat: Sigm 95.8 0.014 2.9E-07 49.5 4.7 44 160-203 2-47 (168)
456 PRK12339 2-phosphoglycerate ki 95.8 0.0092 2E-07 51.9 3.7 26 178-203 3-28 (197)
457 COG1120 FepC ABC-type cobalami 95.8 0.0081 1.8E-07 54.1 3.5 25 177-201 27-51 (258)
458 smart00534 MUTSac ATPase domai 95.8 0.01 2.2E-07 51.2 4.0 21 180-200 1-21 (185)
459 PRK13343 F0F1 ATP synthase sub 95.8 0.043 9.4E-07 54.3 8.7 87 177-268 161-265 (502)
460 TIGR02239 recomb_RAD51 DNA rep 95.8 0.13 2.7E-06 48.4 11.5 87 177-267 95-201 (316)
461 PRK09825 idnK D-gluconate kina 95.8 0.0094 2E-07 50.9 3.7 25 179-203 4-28 (176)
462 COG1936 Predicted nucleotide k 95.8 0.0076 1.6E-07 50.4 2.9 20 180-199 2-21 (180)
463 PF00005 ABC_tran: ABC transpo 95.8 0.0072 1.6E-07 49.0 2.8 26 178-203 11-36 (137)
464 PRK09281 F0F1 ATP synthase sub 95.8 0.05 1.1E-06 54.1 9.0 87 177-268 161-265 (502)
465 PF13521 AAA_28: AAA domain; P 95.8 0.0078 1.7E-07 50.6 3.0 21 181-201 2-22 (163)
466 PF07726 AAA_3: ATPase family 95.7 0.0067 1.4E-07 48.4 2.3 28 180-209 1-28 (131)
467 PRK09302 circadian clock prote 95.7 0.088 1.9E-06 53.0 10.9 95 166-266 17-139 (509)
468 COG0529 CysC Adenylylsulfate k 95.7 0.054 1.2E-06 45.5 7.6 32 174-205 19-50 (197)
469 PRK05800 cobU adenosylcobinami 95.7 0.029 6.3E-07 47.6 6.3 24 179-202 2-25 (170)
470 COG1763 MobB Molybdopterin-gua 95.7 0.011 2.3E-07 49.5 3.5 28 178-205 2-29 (161)
471 PF03796 DnaB_C: DnaB-like hel 95.7 0.077 1.7E-06 48.3 9.6 52 179-233 20-72 (259)
472 PRK04182 cytidylate kinase; Pr 95.7 0.0098 2.1E-07 50.7 3.5 24 180-203 2-25 (180)
473 COG0468 RecA RecA/RadA recombi 95.7 0.088 1.9E-06 48.2 9.7 84 177-267 59-151 (279)
474 PLN02674 adenylate kinase 95.7 0.044 9.5E-07 49.2 7.7 26 178-203 31-56 (244)
475 PRK06731 flhF flagellar biosyn 95.7 0.092 2E-06 48.0 9.9 86 177-267 74-164 (270)
476 KOG1051 Chaperone HSP104 and r 95.7 0.09 2E-06 55.3 10.8 99 160-269 565-672 (898)
477 cd03238 ABC_UvrA The excision 95.7 0.01 2.2E-07 50.7 3.4 122 177-308 20-161 (176)
478 KOG2170 ATPase of the AAA+ sup 95.7 0.051 1.1E-06 49.5 7.8 79 177-269 109-190 (344)
479 cd01428 ADK Adenylate kinase ( 95.7 0.0096 2.1E-07 51.5 3.3 23 181-203 2-24 (194)
480 PRK05917 DNA polymerase III su 95.7 0.42 9E-06 44.1 14.0 128 166-311 6-154 (290)
481 PRK14531 adenylate kinase; Pro 95.7 0.011 2.5E-07 50.7 3.6 24 180-203 4-27 (183)
482 cd03227 ABC_Class2 ABC-type Cl 95.7 0.045 9.8E-07 46.0 7.2 22 179-200 22-43 (162)
483 COG3845 ABC-type uncharacteriz 95.7 0.039 8.5E-07 53.5 7.5 23 178-200 30-52 (501)
484 PRK13948 shikimate kinase; Pro 95.6 0.012 2.6E-07 50.5 3.7 27 177-203 9-35 (182)
485 PLN03186 DNA repair protein RA 95.6 0.16 3.5E-06 48.1 11.4 89 177-267 122-228 (342)
486 PRK13946 shikimate kinase; Pro 95.6 0.011 2.4E-07 50.8 3.4 26 178-203 10-35 (184)
487 cd01672 TMPK Thymidine monopho 95.6 0.012 2.6E-07 50.9 3.6 25 180-204 2-26 (200)
488 PLN02165 adenylate isopentenyl 95.6 0.01 2.2E-07 55.5 3.3 30 174-203 39-68 (334)
489 PHA02774 E1; Provisional 95.6 0.033 7.1E-07 55.7 6.9 40 164-203 419-459 (613)
490 cd03116 MobB Molybdenum is an 95.6 0.016 3.6E-07 48.5 4.2 27 179-205 2-28 (159)
491 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.089 1.9E-06 43.9 8.5 112 179-296 3-139 (159)
492 TIGR02173 cyt_kin_arch cytidyl 95.6 0.012 2.6E-07 49.7 3.5 24 180-203 2-25 (171)
493 PLN02459 probable adenylate ki 95.6 0.087 1.9E-06 47.7 9.0 24 180-203 31-54 (261)
494 PRK05973 replicative DNA helic 95.6 0.044 9.6E-07 49.0 7.1 48 178-229 64-112 (237)
495 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.5 0.012 2.6E-07 52.1 3.5 26 177-202 29-54 (218)
496 TIGR02524 dot_icm_DotB Dot/Icm 95.5 0.027 5.8E-07 53.7 6.0 120 169-297 126-249 (358)
497 PRK06761 hypothetical protein; 95.5 0.012 2.6E-07 54.0 3.5 26 179-204 4-29 (282)
498 TIGR02655 circ_KaiC circadian 95.5 0.12 2.7E-06 51.5 11.0 48 177-228 20-69 (484)
499 TIGR01166 cbiO cobalt transpor 95.5 0.012 2.7E-07 50.8 3.5 25 177-201 17-41 (190)
500 cd03225 ABC_cobalt_CbiO_domain 95.5 0.012 2.7E-07 51.7 3.5 25 177-201 26-50 (211)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-46 Score=385.60 Aligned_cols=327 Identities=22% Similarity=0.332 Sum_probs=266.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhchHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------C--------CCcc-
Q 038663 44 RTRAGQLEARKNDVLGRVDEARDNNEKIKEAVLLWLAKAIQIEIDKEMMEEKIEKNK---------G--------PCHT- 105 (385)
Q Consensus 44 ~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~lr~~a~d~ed~id~~~~~~---------~--------~~~~- 105 (385)
++.+..|++.|..++.+++++++++.. ...+..|.+.++++.|++||.++.|.... . .|+.
T Consensus 27 ~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~ 105 (889)
T KOG4658|consen 27 DNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCG 105 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhh
Confidence 334555555556666666777777653 78899999999999999999999775432 0 1211
Q ss_pred -cccChHHHHHhhHHHHHHHHHHHHHHhcCCCCccccc-ccccccCCCCCCCCCCCcchHHHHHHHHHHhccCCceEEEE
Q 038663 106 -WRLDWRFRRQLSELANVKITKIDELMASRDIHSVSDL-TQSADLGDLATPDYVPLESSSKALNSIMKLLKDEKVNIIGV 183 (385)
Q Consensus 106 -~~~~~~~r~~~~~~i~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I 183 (385)
+..+...-+.+++++.+.+.+++.+..+..+..++.. .+.......|...... +|.+..++++.+.|.+++..+++|
T Consensus 106 ~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i 184 (889)
T KOG4658|consen 106 FCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGIVGI 184 (889)
T ss_pred hHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCEEEE
Confidence 1123444556667777777777777766556555432 2223333334333444 999999999999999887799999
Q ss_pred EcCCCCchHHHHHHHHHHhh-hhCCCCCceEEEEEcC---CHHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHhcC
Q 038663 184 QGPGGVGKSTLMEQLAKQID-TIAPYDKAHVIVAESS---DLRRIQDKIAELLKFKI---EEENELQRRATLAKRLRERT 256 (385)
Q Consensus 184 ~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~~~wv~vs---~~~~l~~~i~~~l~~~~---~~~~~~~~~~~l~~~l~~~~ 256 (385)
+||||+||||||++++|+.. +..+|+ .++||+|| +...++.+|+..++... ...........|.+.|+.
T Consensus 185 ~GMGGvGKTTL~~qi~N~~~~v~~~Fd--~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~-- 260 (889)
T KOG4658|consen 185 YGMGGVGKTTLARQIFNKFDEVGNHFD--GVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEG-- 260 (889)
T ss_pred ECCCcccHHHHHHHHhcccchhcccCc--eEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhcc--
Confidence 99999999999999999988 889999 99999999 99999999999887632 222346788999999999
Q ss_pred CcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhhh-cC-CceEEcCCCCHHHHHHHHHHhhCCC---CCcc
Q 038663 257 KKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCSK-MS-DVTVQIEELGEEDRLKLFKQIARLP---DSEA 331 (385)
Q Consensus 257 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~ 331 (385)
|||+||+||||+..+|+.++.++|...+||+|++|||+..||.. ++ ...+++++|+.++||.||++.+|.. ..+.
T Consensus 261 krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~ 340 (889)
T KOG4658|consen 261 KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPD 340 (889)
T ss_pred CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccccc
Confidence 99999999999999999999999999899999999999999998 77 8899999999999999999999766 4456
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHhcCCCCCCcchhhhhhHHHHHHHHHhh
Q 038663 332 FEGAAKVIVKACGSLPSAIAIVAGALRGKLANESNESLVNIWNDAVEEVIRE 383 (385)
Q Consensus 332 ~~~~~~~I~~~c~GlPlai~~~~~~L~~~~~~~~~~~~~~~W~~~~~~l~~~ 383 (385)
++++|++++++|+|+|||+.++|++|+.|. +.++|+++.+.+.++
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~-------t~~eW~~~~~~l~s~ 385 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKK-------TVQEWRRALNVLKSS 385 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCC-------cHHHHHHHHcccccc
Confidence 899999999999999999999999999999 789999999998775
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.1e-35 Score=273.00 Aligned_cols=211 Identities=31% Similarity=0.499 Sum_probs=173.7
Q ss_pred hHHHHHHHHHHhcc--CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHHHHhcCcc
Q 038663 162 SSKALNSIMKLLKD--EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIAELLKFKI 236 (385)
Q Consensus 162 r~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~~~l~~~~ 236 (385)
|+.++++|.+.|.+ ++.++|+|+||||+||||||..++++.....+|+ .++|+.++ +...++..|+.+++...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~--~v~wv~~~~~~~~~~~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFD--GVIWVSLSKNPSLEQLLEQILRQLGEPD 78 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT--EEEEEEEES-SCCHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccc--cccccccccccccccccccccccccccc
Confidence 78899999999987 7899999999999999999999999977778999 99999998 67889999999998753
Q ss_pred ----ccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhhhcC--CceEEcCC
Q 038663 237 ----EEENELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCSKMS--DVTVQIEE 310 (385)
Q Consensus 237 ----~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~--~~~~~l~~ 310 (385)
...+.......+.+.|.+ +++||||||||+...|..+...++....|++||+|||+..++..+. ...+++++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~L~~--~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 79 SSISDPKDIEELQDQLRELLKD--KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp STSSCCSSHHHHHHHHHHHHCC--TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccchhhhcc--ccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 334567788999999999 8999999999999999888877777777999999999999877665 67899999
Q ss_pred CCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChHHHHHHHHHhcCCCCCCcchhhhhhHHHHHHHHHhh
Q 038663 311 LGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPSAIAIVAGALRGKLANESNESLVNIWNDAVEEVIRE 383 (385)
Q Consensus 311 L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~~~~~~~~~~~~W~~~~~~l~~~ 383 (385)
|+.+++++||.+.++.. ..+.+.+.+++|+++|+|+||||.++|++|+.+. +..+|+.+++++...
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~-------~~~~w~~~~~~l~~~ 225 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKS-------TVDEWEEALEELENS 225 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHH-------SSSSHHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccccccccccccccc
Confidence 99999999999998654 3455668899999999999999999999998776 479999999988764
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=7.5e-29 Score=268.03 Aligned_cols=213 Identities=20% Similarity=0.313 Sum_probs=169.4
Q ss_pred CCCCCcchHHHHHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEc---C-C--------
Q 038663 155 DYVPLESSSKALNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAES---S-D-------- 220 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~v---s-~-------- 220 (385)
+..+++|++..++++..+|. .++.++++|+||||+||||||+.+|+... .+|+ ..+|+.. + .
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~--g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQ--SSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCC--eEEEeeccccccchhhccccc
Confidence 34568999999999998875 45789999999999999999999999876 4588 6666532 1 0
Q ss_pred ------HHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCC
Q 038663 221 ------LRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRR 294 (385)
Q Consensus 221 ------~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~ 294 (385)
...+..+++..+...... ... ....+++.+++ +|+||||||||+..+|+.+.......+.||+||||||+
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~-~~~-~~~~~~~~L~~--krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDI-KIY-HLGAMEERLKH--RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCc-ccC-CHHHHHHHHhC--CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 112334444443221111 000 12456778888 99999999999999999887665556789999999999
Q ss_pred hhhhhhcC-CceEEcCCCCHHHHHHHHHHhhCCC--CCcchHHHHHHHHHHhCCChHHHHHHHHHhcCCCCCCcchhhhh
Q 038663 295 LDVCSKMS-DVTVQIEELGEEDRLKLFKQIARLP--DSEAFEGAAKVIVKACGSLPSAIAIVAGALRGKLANESNESLVN 371 (385)
Q Consensus 295 ~~v~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~~~~~~~~~~~ 371 (385)
..++..++ .++|+++.|+.+++|+||++.++.. .+..+.+++++|+++|+|+|||++++|++|+.++ ..
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~--------~~ 405 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRD--------KE 405 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCC--------HH
Confidence 99988777 8899999999999999999999655 4456789999999999999999999999999886 79
Q ss_pred hHHHHHHHHHhh
Q 038663 372 IWNDAVEEVIRE 383 (385)
Q Consensus 372 ~W~~~~~~l~~~ 383 (385)
+|++++++|+..
T Consensus 406 ~W~~~l~~L~~~ 417 (1153)
T PLN03210 406 DWMDMLPRLRNG 417 (1153)
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
No 4
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.58 E-value=7.8e-13 Score=121.52 Aligned_cols=203 Identities=16% Similarity=0.153 Sum_probs=129.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHHHHHhcCccccccHHHHHHHHHHHHH
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKIAELLKFKIEEENELQRRATLAKRLR 253 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 253 (385)
...+.+.|+|++|+|||||++.+++..... .+ ...|+... +..+++..++..++.+....+.......+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~---~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQE-RV---VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce---EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999999887632 11 33444433 7778899999888765443333333344443331
Q ss_pred ---hcCCcEEEEEeCCCcch--hhhhhc---CCCCCCCCCeEEEEeeCChhh---h----hhcC---CceEEcCCCCHHH
Q 038663 254 ---ERTKKVLIILDDVREKI--NLAVSG---IPYGEEGNRCKVIVTSRRLDV---C----SKMS---DVTVQIEELGEED 315 (385)
Q Consensus 254 ---~~~kr~LlVlDdv~~~~--~~~~l~---~~~~~~~~gs~iivTtr~~~v---~----~~~~---~~~~~l~~L~~~~ 315 (385)
..+++++||+||++... .+..+. ...........|++|...... . ..+. ...+++++|+.++
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 11278999999998653 344332 111122233455666654321 0 0011 4568899999999
Q ss_pred HHHHHHHhhC---CC-CCcchHHHHHHHHHHhCCChHHHHHHHHHhcCCC-CCCcchhhhhhHHHHHHHHHh
Q 038663 316 RLKLFKQIAR---LP-DSEAFEGAAKVIVKACGSLPSAIAIVAGALRGKL-ANESNESLVNIWNDAVEEVIR 382 (385)
Q Consensus 316 ~~~lf~~~~~---~~-~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~-~~~~~~~~~~~W~~~~~~l~~ 382 (385)
..+++...+. .. ...-..+..+.|++.|+|.|..|..++..+.... ......++.+.++.++.+++.
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~~ 268 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEIDF 268 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhc
Confidence 9999988763 22 2233458889999999999999999998772110 000112378899998888764
No 5
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.52 E-value=1.4e-13 Score=123.32 Aligned_cols=190 Identities=17% Similarity=0.264 Sum_probs=105.2
Q ss_pred CcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHH--------
Q 038663 159 LESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKI-------- 228 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i-------- 228 (385)
|+||+.+++.|.+++..+..+.+.|+|+.|+|||+|++.+.+..+... + ..+|+... ........+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~---~~~y~~~~~~~~~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y---KVVYIDFLEESNESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E---CCCHHCCTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C---cEEEEecccchhhhHHHHHHHHHHHHH
Confidence 789999999999999887788999999999999999999999875321 1 12222222 222222222
Q ss_pred --HHHhcCccc-----------cccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-h----------hhhhcCCCCCCCC
Q 038663 229 --AELLKFKIE-----------EENELQRRATLAKRLRERTKKVLIILDDVREKI-N----------LAVSGIPYGEEGN 284 (385)
Q Consensus 229 --~~~l~~~~~-----------~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-~----------~~~l~~~~~~~~~ 284 (385)
...+....+ ..........+.+.+...+++++|||||+.... . +..+....... .
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ-Q 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-C
Confidence 111211110 112234455666666664467999999987554 1 11111122223 3
Q ss_pred CeEEEEeeCChhhhhh--------cC-CceEEcCCCCHHHHHHHHHHhhCCCC-CcchHHHHHHHHHHhCCChHHHHHH
Q 038663 285 RCKVIVTSRRLDVCSK--------MS-DVTVQIEELGEEDRLKLFKQIARLPD-SEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 285 gs~iivTtr~~~v~~~--------~~-~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
+..+|+++........ .+ ...+.+++|+.+++++++...+.... -+.-.+..++|+..+||+|..|..+
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhcC
Confidence 3445555554443322 22 44599999999999999999763321 0223566789999999999998753
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.50 E-value=4.2e-12 Score=123.24 Aligned_cols=221 Identities=18% Similarity=0.145 Sum_probs=138.2
Q ss_pred CCCcchHHHHHHHHHHhc----cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHH
Q 038663 157 VPLESSSKALNSIMKLLK----DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIA 229 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~ 229 (385)
..++||++++++|...+. +.....+.|+|++|+|||++++.++++.......- ..+++... +...++..++
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~--~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKV--VYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCc--EEEEEECCcCCCHHHHHHHHH
Confidence 458899999999999874 33456789999999999999999999876543112 44555444 6678888999
Q ss_pred HHhcC-cc--ccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch------hhhhhcCCCCCC-CCCeEEEEeeCChhhhh
Q 038663 230 ELLKF-KI--EEENELQRRATLAKRLRERTKKVLIILDDVREKI------NLAVSGIPYGEE-GNRCKVIVTSRRLDVCS 299 (385)
Q Consensus 230 ~~l~~-~~--~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~------~~~~l~~~~~~~-~~gs~iivTtr~~~v~~ 299 (385)
.++.. .. ...+..+....+.+.+...++..+|||||++... .+..+...+... +.+..+|.++....+..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhh
Confidence 88864 21 2224556677778887764467899999998642 223332222111 11334666666544322
Q ss_pred h--------cCCceEEcCCCCHHHHHHHHHHhhCCC------CCcchHHHHHHHHHHhCCChHHHHHHHHHh--cCCCCC
Q 038663 300 K--------MSDVTVQIEELGEEDRLKLFKQIARLP------DSEAFEGAAKVIVKACGSLPSAIAIVAGAL--RGKLAN 363 (385)
Q Consensus 300 ~--------~~~~~~~l~~L~~~~~~~lf~~~~~~~------~~~~~~~~~~~I~~~c~GlPlai~~~~~~L--~~~~~~ 363 (385)
. .....+.++|++.++..+++..++... .+..++.+++.....+|.++.|+..+-... +...
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~-- 265 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE-- 265 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc--
Confidence 2 124578999999999999999887221 222223333333333466788887765432 1111
Q ss_pred CcchhhhhhHHHHHHHHH
Q 038663 364 ESNESLVNIWNDAVEEVI 381 (385)
Q Consensus 364 ~~~~~~~~~W~~~~~~l~ 381 (385)
.+..++.+..+.+++++.
T Consensus 266 ~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 011226788888877663
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=2.9e-11 Score=129.65 Aligned_cols=191 Identities=15% Similarity=0.186 Sum_probs=124.9
Q ss_pred CCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHh
Q 038663 157 VPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELL 232 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l 232 (385)
.+++-|...++.|-. ....+++.|+||+|.||||++.++.+. +. .++|+++. +...++..++..+
T Consensus 14 ~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~--~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KN--NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CC--CeEEEecCcccCCHHHHHHHHHHHH
Confidence 356677755555532 345789999999999999999998853 34 67899986 5566777777777
Q ss_pred cCcccc--------------ccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch--hhh-hhcCCCCCCCCCeEEEEeeCCh
Q 038663 233 KFKIEE--------------ENELQRRATLAKRLRERTKKVLIILDDVREKI--NLA-VSGIPYGEEGNRCKVIVTSRRL 295 (385)
Q Consensus 233 ~~~~~~--------------~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~--~~~-~l~~~~~~~~~gs~iivTtr~~ 295 (385)
...... .+.......+...+...+.+++|||||++..+ ... .+...+.....+.++|+|||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 421111 11122333344444432389999999998652 222 2211122233466888999985
Q ss_pred hhhh--hcC--CceEEcC----CCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhcCCC
Q 038663 296 DVCS--KMS--DVTVQIE----ELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALRGKL 361 (385)
Q Consensus 296 ~v~~--~~~--~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~ 361 (385)
.-.. .+. .....+. +|+.+|+.++|....|...++ +....|.+.|+|+|+++..++..+....
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~---~~~~~l~~~t~Gwp~~l~l~~~~~~~~~ 233 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEA---AESSRLCDDVEGWATALQLIALSARQNN 233 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCH---HHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 3211 111 3445566 999999999999888764322 5567799999999999999987775543
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.35 E-value=2.4e-10 Score=109.84 Aligned_cols=222 Identities=14% Similarity=0.177 Sum_probs=132.6
Q ss_pred CCcchHHHHHHHHHHhcc----CCceEEEEEcCCCCchHHHHHHHHHHhhhhC-CCC-CceEEEEEcC---CHHHHHHHH
Q 038663 158 PLESSSKALNSIMKLLKD----EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIA-PYD-KAHVIVAESS---DLRRIQDKI 228 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~-~~~~~wv~vs---~~~~l~~~i 228 (385)
.++||+.+++.|...+.+ .....+.|+|++|+|||++++.+++...... ... +...+|+... +...++..|
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 589999999999998863 4456899999999999999999998865321 110 0134555544 667888889
Q ss_pred HHHhc---Cccc--cccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-----hhhhhcCC--CCC-CCCCeEEEEeeCCh
Q 038663 229 AELLK---FKIE--EENELQRRATLAKRLRERTKKVLIILDDVREKI-----NLAVSGIP--YGE-EGNRCKVIVTSRRL 295 (385)
Q Consensus 229 ~~~l~---~~~~--~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-----~~~~l~~~--~~~-~~~gs~iivTtr~~ 295 (385)
+.++. ...+ ..+..+....+.+.+...+++++||||+++... .+..+... ... .+.+..+|.++...
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~ 175 (365)
T TIGR02928 96 ANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDL 175 (365)
T ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCc
Confidence 98883 2222 223445566677777543378999999998651 12222211 111 11233455555444
Q ss_pred hhhhhc--------CCceEEcCCCCHHHHHHHHHHhhCC--C---CCcchHHHHHHHHHHhCCChHHH-HHHHHHh--cC
Q 038663 296 DVCSKM--------SDVTVQIEELGEEDRLKLFKQIARL--P---DSEAFEGAAKVIVKACGSLPSAI-AIVAGAL--RG 359 (385)
Q Consensus 296 ~v~~~~--------~~~~~~l~~L~~~~~~~lf~~~~~~--~---~~~~~~~~~~~I~~~c~GlPlai-~~~~~~L--~~ 359 (385)
.....+ ....+.++|++.++..+++..++.. . .+++..+....++..+.|.|-.+ ..+-... ..
T Consensus 176 ~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 176 KFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAE 255 (365)
T ss_pred chHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 322111 1356899999999999999998731 1 22333334445666777888544 3332211 11
Q ss_pred CCCCCcchhhhhhHHHHHHHHH
Q 038663 360 KLANESNESLVNIWNDAVEEVI 381 (385)
Q Consensus 360 ~~~~~~~~~~~~~W~~~~~~l~ 381 (385)
.. . ...++.+..+.+.+.+.
T Consensus 256 ~~-~-~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 256 RE-G-AERVTEDHVEKAQEKIE 275 (365)
T ss_pred Hc-C-CCCCCHHHHHHHHHHHH
Confidence 10 0 01125777777766654
No 9
>PF05729 NACHT: NACHT domain
Probab=99.28 E-value=5.7e-11 Score=100.51 Aligned_cols=141 Identities=24% Similarity=0.274 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCC--ceEEEEEcC--CH----HHHHHHHHHHhcCccccccHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDK--AHVIVAESS--DL----RRIQDKIAELLKFKIEEENELQRRATLAK 250 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~~~wv~vs--~~----~~l~~~i~~~l~~~~~~~~~~~~~~~l~~ 250 (385)
+++.|+|.+|+||||+++.++........... ...+|.+.+ +. ..+...+.......... ....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 57899999999999999999998765543220 166677776 11 12333333333221111 1112223
Q ss_pred HHHhcCCcEEEEEeCCCcchh---------hhhhcCCCCC--CCCCeEEEEeeCChhhhh---hcC-CceEEcCCCCHHH
Q 038663 251 RLRERTKKVLIILDDVREKIN---------LAVSGIPYGE--EGNRCKVIVTSRRLDVCS---KMS-DVTVQIEELGEED 315 (385)
Q Consensus 251 ~l~~~~kr~LlVlDdv~~~~~---------~~~l~~~~~~--~~~gs~iivTtr~~~v~~---~~~-~~~~~l~~L~~~~ 315 (385)
.+.. .++++||||++++... +..+...+.. ...++++++|+|...... ... ...+.+.+|++++
T Consensus 76 ~~~~-~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 76 LLEK-NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHc-CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 3333 2899999999875422 2222211222 245789999999987733 233 5689999999999
Q ss_pred HHHHHHHhhC
Q 038663 316 RLKLFKQIAR 325 (385)
Q Consensus 316 ~~~lf~~~~~ 325 (385)
..+++.+...
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.26 E-value=2.2e-10 Score=107.26 Aligned_cols=186 Identities=15% Similarity=0.151 Sum_probs=111.8
Q ss_pred CCCCcchHHHHHHHHHHhc-----cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHH
Q 038663 156 YVPLESSSKALNSIMKLLK-----DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDK 227 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~ 227 (385)
+..|+|++..++.|..++. ......+.++||+|+|||+||+.+.+..... |. .+..+ .... +..
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~~-----~~~~~~~~~~~~-l~~ 74 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--LK-----ITSGPALEKPGD-LAA 74 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--EE-----EeccchhcCchh-HHH
Confidence 3468999999999988886 2445678999999999999999999987532 21 11111 1111 112
Q ss_pred HHHHhcCcc----cccc--HHHHHHHHHHHHHhcCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhhhc
Q 038663 228 IAELLKFKI----EEEN--ELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCSKM 301 (385)
Q Consensus 228 i~~~l~~~~----~~~~--~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~ 301 (385)
.+..+.... ++.+ .......+...+.+ .+..+|+|+..+...+. ..+ .+.+-|..||+...+...+
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~--~~~~~v~~~~~~~~~~~---~~~---~~~~li~~t~~~~~l~~~l 146 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMED--FRLDIVIGKGPSARSVR---LDL---PPFTLVGATTRAGMLTSPL 146 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhh--hheeeeeccCcccccee---ecC---CCeEEEEecCCccccCHHH
Confidence 222222100 0000 01122334444555 45555666544433332 111 1245667777775553332
Q ss_pred C---CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHh
Q 038663 302 S---DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGAL 357 (385)
Q Consensus 302 ~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L 357 (385)
. ...+.+++++.++..+++.+.++.....-..+....|++.|+|.|-.+..++..+
T Consensus 147 ~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~ 205 (305)
T TIGR00635 147 RDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRV 205 (305)
T ss_pred HhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 2 4578999999999999999988543222334677889999999998776666543
No 11
>PRK06893 DNA replication initiation factor; Validated
Probab=99.22 E-value=2.7e-10 Score=101.95 Aligned_cols=154 Identities=14% Similarity=0.167 Sum_probs=94.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERT 256 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 256 (385)
..+.+.|+|++|+|||+|++.+++..... .. ...+++......... .+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~--~~~y~~~~~~~~~~~--------------------~~~~~~~--- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QR--TAIYIPLSKSQYFSP--------------------AVLENLE--- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CC--CeEEeeHHHhhhhhH--------------------HHHhhcc---
Confidence 34678999999999999999999986543 22 344555431111111 1111222
Q ss_pred CcEEEEEeCCCcc---hhhhh-hcCCCCC-CCCCeEEE-EeeCC---------hhhhhhcC-CceEEcCCCCHHHHHHHH
Q 038663 257 KKVLIILDDVREK---INLAV-SGIPYGE-EGNRCKVI-VTSRR---------LDVCSKMS-DVTVQIEELGEEDRLKLF 320 (385)
Q Consensus 257 kr~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~ii-vTtr~---------~~v~~~~~-~~~~~l~~L~~~~~~~lf 320 (385)
+.-+|+|||+|.. ..|.. +...+.. ...|..++ +|+.. +.+.+.+. ...++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 3458999999864 34442 2111211 12244554 45544 24455555 678999999999999999
Q ss_pred HHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHh
Q 038663 321 KQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGAL 357 (385)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L 357 (385)
++.+....-.-.+++.+-|++.+.|-.-.+..+-..|
T Consensus 171 ~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9888433222334777889999987776665554434
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.21 E-value=1.6e-10 Score=109.24 Aligned_cols=187 Identities=16% Similarity=0.143 Sum_probs=109.5
Q ss_pred CCCCCcchHHHHHHHHHHhc-----cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHH
Q 038663 155 DYVPLESSSKALNSIMKLLK-----DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDK 227 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~ 227 (385)
.+..|+|+++.++.+..++. +.....+.|+||+|+|||+||+.+.+..... +. .+..+ ....-+..
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~~-----~~~~~~~~~~~~l~~ 95 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--IR-----ITSGPALEKPGDLAA 95 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--eE-----EEecccccChHHHHH
Confidence 45679999999998887774 2345688999999999999999999987632 21 12221 11111222
Q ss_pred HHHHhcCcc----cccc--HHHHHHHHHHHHHhcCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhhhc
Q 038663 228 IAELLKFKI----EEEN--ELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCSKM 301 (385)
Q Consensus 228 i~~~l~~~~----~~~~--~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~ 301 (385)
++..+.... ++.+ .....+.+...+.+ .+..+++|+..+...+. ..+ ...+-|..|++...+...+
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~--~~~~~~l~~~~~~~~~~---~~l---~~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMED--FRLDIMIGKGPAARSIR---LDL---PPFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHh--cceeeeeccCcccccee---ecC---CCceEEeecCCcccCCHHH
Confidence 222221100 0000 00112223333344 44444454433322111 011 1245566777765543332
Q ss_pred C---CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHH
Q 038663 302 S---DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGA 356 (385)
Q Consensus 302 ~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~ 356 (385)
. ...+.+++++.++..+++.+.++.....-..+....|++.|+|.|-.+..+...
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHH
Confidence 2 457899999999999999998865433334467889999999999866666654
No 13
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.18 E-value=3.9e-10 Score=104.61 Aligned_cols=171 Identities=18% Similarity=0.262 Sum_probs=104.9
Q ss_pred CCCCCcchHHHH---HHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHH
Q 038663 155 DYVPLESSSKAL---NSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAE 230 (385)
Q Consensus 155 ~~~~~~gr~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~ 230 (385)
....++|.+..+ .-|..++..+++....+|||+|+||||||+.+...... .|. ..-.+. ...++.. +++
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~--~f~----~~sAv~~gvkdlr~-i~e 94 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA--AFE----ALSAVTSGVKDLRE-IIE 94 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC--ceE----EeccccccHHHHHH-HHH
Confidence 344566655443 45556667888999999999999999999999997663 354 111111 2222211 111
Q ss_pred HhcCccccccHHHHHHHHHH-HHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChhh---hhhcC-C
Q 038663 231 LLKFKIEEENELQRRATLAK-RLRERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLDV---CSKMS-D 303 (385)
Q Consensus 231 ~l~~~~~~~~~~~~~~~l~~-~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~v---~~~~~-~ 303 (385)
.-++ ...+ ++.+|++|+|+.. .+.+.+ .|+.+++.-.-|-.||.+... ....+ +
T Consensus 95 ----------------~a~~~~~~g--r~tiLflDEIHRfnK~QQD~l-Lp~vE~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 95 ----------------EARKNRLLG--RRTILFLDEIHRFNKAQQDAL-LPHVENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred ----------------HHHHHHhcC--CceEEEEehhhhcChhhhhhh-hhhhcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 1111 1123 8999999999855 344433 344344333344557777764 23334 8
Q ss_pred ceEEcCCCCHHHHHHHHHHhh-----CCC--CCcchHHHHHHHHHHhCCChHHHH
Q 038663 304 VTVQIEELGEEDRLKLFKQIA-----RLP--DSEAFEGAAKVIVKACGSLPSAIA 351 (385)
Q Consensus 304 ~~~~l~~L~~~~~~~lf~~~~-----~~~--~~~~~~~~~~~I~~~c~GlPlai~ 351 (385)
.++.|++|+.++...++.+.+ |.. ...-.++..+-|+..++|=--+.-
T Consensus 156 ~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence 899999999999999999954 111 111223566778888888654433
No 14
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.12 E-value=3.5e-09 Score=92.01 Aligned_cols=174 Identities=18% Similarity=0.254 Sum_probs=100.6
Q ss_pred CCCCCCcchHHHHHHHHHHhc-----cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHH
Q 038663 154 PDYVPLESSSKALNSIMKLLK-----DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQ 225 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~ 225 (385)
..+.+|+|.+..++.+.-++. ++.+..+.++||+|+||||||+.+.++.... |. +++.+ ...++.
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~-----~~sg~~i~k~~dl~ 93 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK-----ITSGPAIEKAGDLA 93 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE-----EEECCC--SCHHHH
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE-----eccchhhhhHHHHH
Confidence 345679999888877655543 3567899999999999999999999998743 32 22222 111111
Q ss_pred HHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch--hhhhhcCC---------CCCC----------CC
Q 038663 226 DKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGIP---------YGEE----------GN 284 (385)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~--~~~~l~~~---------~~~~----------~~ 284 (385)
.++ ..++ ++-+|++|+++... +.+.+... ...+ .+
T Consensus 94 -~il--------------------~~l~---~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 94 -AIL--------------------TNLK---EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp -HHH--------------------HT-----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred -HHH--------------------HhcC---CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 111 1122 45577778887541 11111110 0111 12
Q ss_pred CeEEEEeeCChhhhhhcC---CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhc
Q 038663 285 RCKVIVTSRRLDVCSKMS---DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALR 358 (385)
Q Consensus 285 gs~iivTtr~~~v~~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~ 358 (385)
-+-|-.|||...+...+. .-..+|..++.+|...+..+.++.-.-+-.++.+.+|++.|.|-|--..-+-...+
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 356788999987766555 44568999999999999998875544444568889999999999977666554443
No 15
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.10 E-value=1.2e-09 Score=106.41 Aligned_cols=173 Identities=14% Similarity=0.219 Sum_probs=107.5
Q ss_pred CCCCcchHHHHHH---HHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHHHH
Q 038663 156 YVPLESSSKALNS---IMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKIAE 230 (385)
Q Consensus 156 ~~~~~gr~~~~~~---l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i~~ 230 (385)
+..++|++..+.. |..++..+....+.|+|++|+||||||+.+++.... .|. .++.+ .... ++.++
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~--~~~-----~l~a~~~~~~~-ir~ii- 81 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA--PFE-----ALSAVTSGVKD-LREVI- 81 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC--CEE-----EEecccccHHH-HHHHH-
Confidence 4458888877665 777787777788999999999999999999987642 232 11111 1111 11111
Q ss_pred HhcCccccccHHHHHHHHHHHH-HhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEE--eeCChhh---hhhcC
Q 038663 231 LLKFKIEEENELQRRATLAKRL-RERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIV--TSRRLDV---CSKMS 302 (385)
Q Consensus 231 ~l~~~~~~~~~~~~~~~l~~~l-~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--Ttr~~~v---~~~~~ 302 (385)
....... .+ ++.+|+|||++.. ...+.+...+ +. +..+++ ||.+... .....
T Consensus 82 ---------------~~~~~~~~~g--~~~vL~IDEi~~l~~~~q~~LL~~l-e~--~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 82 ---------------EEARQRRSAG--RRTILFIDEIHRFNKAQQDALLPHV-ED--GTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred ---------------HHHHHhhhcC--CceEEEEechhhhCHHHHHHHHHHh-hc--CcEEEEEeCCCChhhhccHHHhc
Confidence 1111111 23 7889999999865 2344443333 22 333333 4444321 12223
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCC--CC-cchHHHHHHHHHHhCCChHHHHHHHHHh
Q 038663 303 -DVTVQIEELGEEDRLKLFKQIARLP--DS-EAFEGAAKVIVKACGSLPSAIAIVAGAL 357 (385)
Q Consensus 303 -~~~~~l~~L~~~~~~~lf~~~~~~~--~~-~~~~~~~~~I~~~c~GlPlai~~~~~~L 357 (385)
...+.+.+++.++...++.+.+... .. .-..+..+.|++.|+|.|..+..+....
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 6789999999999999999876321 11 2335677889999999998775554443
No 16
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.10 E-value=1.6e-09 Score=96.77 Aligned_cols=169 Identities=14% Similarity=0.216 Sum_probs=104.7
Q ss_pred chHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCcccccc
Q 038663 161 SSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEEN 240 (385)
Q Consensus 161 gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~ 240 (385)
+....++.+..++.......+.|+|++|+|||+||+.+++..... .. ..+++..++...-...
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~--~~~~i~~~~~~~~~~~------------- 83 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GK--SAIYLPLAELAQADPE------------- 83 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CC--cEEEEeHHHHHHhHHH-------------
Confidence 345577788777666667899999999999999999999886532 22 3344444432211111
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCcch---hhh-hhcCCCCC-CCCCeEEEEeeCChh---------hhhhcC-Cce
Q 038663 241 ELQRRATLAKRLRERTKKVLIILDDVREKI---NLA-VSGIPYGE-EGNRCKVIVTSRRLD---------VCSKMS-DVT 305 (385)
Q Consensus 241 ~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~iivTtr~~~---------v~~~~~-~~~ 305 (385)
+...+. +.-+|||||++... .|. .+...+.. ...+.++|+||+... +.+.+. ...
T Consensus 84 -------~~~~~~---~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~ 153 (226)
T TIGR03420 84 -------VLEGLE---QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLV 153 (226)
T ss_pred -------HHhhcc---cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCee
Confidence 111222 33489999997543 222 23222211 122347888887532 122232 467
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHH
Q 038663 306 VQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGA 356 (385)
Q Consensus 306 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~ 356 (385)
+.+.+++.++...++.+.+......-..+..+.|.+.++|.|..+..+...
T Consensus 154 i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred EecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 999999999999999876522211223366677888999999988777433
No 17
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.05 E-value=1.7e-08 Score=101.74 Aligned_cols=195 Identities=17% Similarity=0.184 Sum_probs=133.0
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHH
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAEL 231 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~ 231 (385)
..+.+-|...++.|.+ ..+.+.+.|..|+|.|||||+-+........ . .+.|.+.. +..++++.++..
T Consensus 18 ~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~~---~--~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 18 PDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAADG---A--AVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred cccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCcc---c--ceeEeecCCccCCHHHHHHHHHHH
Confidence 3445666654444433 4478999999999999999999998743322 2 88999998 788888888888
Q ss_pred hcCccccc--------------cHHHHHHHHHHHHHhcCCcEEEEEeCCCcch--hh-hhhcCCCCCCCCCeEEEEeeCC
Q 038663 232 LKFKIEEE--------------NELQRRATLAKRLRERTKKVLIILDDVREKI--NL-AVSGIPYGEEGNRCKVIVTSRR 294 (385)
Q Consensus 232 l~~~~~~~--------------~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~--~~-~~l~~~~~~~~~gs~iivTtr~ 294 (385)
++.-.+.. +...+...+...+....+++.+||||.+-.. .. ..+...+.....+..+|+|||+
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 87422211 1233455555555554579999999986432 22 2233333344557889999999
Q ss_pred hhhhhhc--C--CceEEcC----CCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhcCCC
Q 038663 295 LDVCSKM--S--DVTVQIE----ELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALRGKL 361 (385)
Q Consensus 295 ~~v~~~~--~--~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~ 361 (385)
..-...- . +...++. .|+.+|+.++|....|...+ ..-.+.+.+..+|.+-|+..++=.++.+.
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld---~~~~~~L~~~teGW~~al~L~aLa~~~~~ 241 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD---AADLKALYDRTEGWAAALQLIALALRNNT 241 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC---hHHHHHHHhhcccHHHHHHHHHHHccCCC
Confidence 8643221 1 3444443 48999999999988765522 24556799999999999999998888433
No 18
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.02 E-value=3.5e-08 Score=100.36 Aligned_cols=220 Identities=15% Similarity=0.152 Sum_probs=131.5
Q ss_pred CCcchHHHHHHHHHHhcc----C-CceEEEEEcCCCCchHHHHHHHHHHhhhh---CCCCCceEEEEEcC---CHHHHHH
Q 038663 158 PLESSSKALNSIMKLLKD----E-KVNIIGVQGPGGVGKSTLMEQLAKQIDTI---APYDKAHVIVAESS---DLRRIQD 226 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~----~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~F~~~~~~wv~vs---~~~~l~~ 226 (385)
.+.||+++++.|...|.+ . ...++.|+|++|+|||++++.|.+.+... ........+++... +...++.
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYq 835 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQ 835 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHH
Confidence 478999999999998862 2 23577899999999999999999886532 11221133444332 7778888
Q ss_pred HHHHHhcCcccc--ccHHHHHHHHHHHHHhc-CCcEEEEEeCCCcch--h---hhhhcCCCCCCCCCeEE--EEeeCChh
Q 038663 227 KIAELLKFKIEE--ENELQRRATLAKRLRER-TKKVLIILDDVREKI--N---LAVSGIPYGEEGNRCKV--IVTSRRLD 296 (385)
Q Consensus 227 ~i~~~l~~~~~~--~~~~~~~~~l~~~l~~~-~kr~LlVlDdv~~~~--~---~~~l~~~~~~~~~gs~i--ivTtr~~~ 296 (385)
.|.+++....+. .........+...+... ....+|||||++... . +-.+... + ...+++| |.++..-.
T Consensus 836 vI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 836 VLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEEEecCchh
Confidence 888888543222 22334455555555321 134589999997542 1 1111111 1 1123444 33343222
Q ss_pred h--------hhhcCCceEEcCCCCHHHHHHHHHHhhCCC----CCcchHHHHHHHHHHhCCChHHHHHHHHHhcCCCCCC
Q 038663 297 V--------CSKMSDVTVQIEELGEEDRLKLFKQIARLP----DSEAFEGAAKVIVKACGSLPSAIAIVAGALRGKLANE 364 (385)
Q Consensus 297 v--------~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~----~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~~~~ 364 (385)
. .+.++...+.+.|++.++..+++..++... .+..++-+++.++...|..-.||.++-.....+..
T Consensus 914 LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg-- 991 (1164)
T PTZ00112 914 LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG-- 991 (1164)
T ss_pred cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC--
Confidence 1 222223457789999999999999988432 34445555666666677888888887766654321
Q ss_pred cchhhhhhHHHHHHHHHh
Q 038663 365 SNESLVNIWNDAVEEVIR 382 (385)
Q Consensus 365 ~~~~~~~~W~~~~~~l~~ 382 (385)
..++.+.=+.+.+++..
T Consensus 992 -skVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 992 -QKIVPRDITEATNQLFD 1008 (1164)
T ss_pred -CccCHHHHHHHHHHHHh
Confidence 12345555555555543
No 19
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.5e-08 Score=90.86 Aligned_cols=192 Identities=19% Similarity=0.289 Sum_probs=128.4
Q ss_pred CcchHHHHHHHHHHhc----cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHHHH
Q 038663 159 LESSSKALNSIMKLLK----DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIAEL 231 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~~~ 231 (385)
+.+|+.+++.+...|. +..+..+.|+|++|+|||+.++.+.++......=. ..+.+..- +...++..|++.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~--~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANV--EVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccC--ceEEEeeeeCCCHHHHHHHHHHH
Confidence 7899999999998875 34455699999999999999999999987542211 23444333 889999999999
Q ss_pred hcC-ccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchhh-----hhhcCCCCCCCCCeE--EEEeeCChhh------
Q 038663 232 LKF-KIEEENELQRRATLAKRLRERTKKVLIILDDVREKINL-----AVSGIPYGEEGNRCK--VIVTSRRLDV------ 297 (385)
Q Consensus 232 l~~-~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~~-----~~l~~~~~~~~~gs~--iivTtr~~~v------ 297 (385)
++. +....+..+....+.+.+...++.+++|||++.....- -.+....... .++ +|..+.....
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhh
Confidence 863 33345566777888888877668999999999754221 1222221112 343 3444444332
Q ss_pred --hhhcCCceEEcCCCCHHHHHHHHHHhhC--CC----CCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 298 --CSKMSDVTVQIEELGEEDRLKLFKQIAR--LP----DSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 298 --~~~~~~~~~~l~~L~~~~~~~lf~~~~~--~~----~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
.+.++...+.++|.+.+|...++..++. .. .+..++-++...+...|-.-.||..+-
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 2333344589999999999999999882 21 344444555555555556666666654
No 20
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=1.3e-08 Score=102.66 Aligned_cols=194 Identities=14% Similarity=0.170 Sum_probs=114.2
Q ss_pred CCCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHH--
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAEL-- 231 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~-- 231 (385)
.+.+++|.+..++.|.+++..+++. .+.++|+.|+||||+++.+.+.+.-...+.. .. | ........|...
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-~P---C--G~C~sCr~I~~G~h 87 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-QP---C--GVCRACREIDEGRF 87 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-CC---C--cccHHHHHHhcCCC
Confidence 3456889999999999999877654 5589999999999999999987642211110 00 0 000111111100
Q ss_pred ---hcCc-cccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChh-hhhh-
Q 038663 232 ---LKFK-IEEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLD-VCSK- 300 (385)
Q Consensus 232 ---l~~~-~~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~- 300 (385)
+... ......++... +.+.+.. .++.-++|||+++.. ..++.|...+.+...++++|++|.+.. +...
T Consensus 88 ~DviEIDAas~rgVDdIRe-LIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAA-LLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred ceEEEecccccccHHHHHH-HHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchh
Confidence 0000 00011111111 1122111 014558889999865 346666555544445677777666543 3322
Q ss_pred cC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHH
Q 038663 301 MS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-SAIAIVAG 355 (385)
Q Consensus 301 ~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~~~ 355 (385)
.+ +..+++++++.++..+.+.+.++.....-..+..+.|++.|+|.. -|+..+-.
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 23 789999999999999999998854422233467778999998854 56655443
No 21
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.97 E-value=2e-08 Score=90.26 Aligned_cols=167 Identities=16% Similarity=0.226 Sum_probs=100.4
Q ss_pred HHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHH
Q 038663 164 KALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQ 243 (385)
Q Consensus 164 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~ 243 (385)
..+..+..+........+.|+|++|+|||+|++.+++..... -. .+.++++......
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~--~v~y~~~~~~~~~------------------- 87 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GR--AVGYVPLDKRAWF------------------- 87 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CC--eEEEEEHHHHhhh-------------------
Confidence 345555555544555789999999999999999999876532 12 4445544321110
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCcc---hhhhhhc-CCCCC--CCCCeEEEEeeCChh---------hhhhcC-CceEE
Q 038663 244 RRATLAKRLRERTKKVLIILDDVREK---INLAVSG-IPYGE--EGNRCKVIVTSRRLD---------VCSKMS-DVTVQ 307 (385)
Q Consensus 244 ~~~~l~~~l~~~~kr~LlVlDdv~~~---~~~~~l~-~~~~~--~~~gs~iivTtr~~~---------v~~~~~-~~~~~ 307 (385)
...+.+.+. +--+|+|||+... ..|.... ..+.. ...+.++|+||+... ..+.+. ..+++
T Consensus 88 -~~~~~~~~~---~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~ 163 (235)
T PRK08084 88 -VPEVLEGME---QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYK 163 (235)
T ss_pred -hHHHHHHhh---hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceee
Confidence 011122222 2347899999753 3343211 11111 112247888887553 233344 68999
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHh
Q 038663 308 IEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGAL 357 (385)
Q Consensus 308 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L 357 (385)
++++++++-.+++++++....-.-.+++..-|++.+.|-.-.+..+-..|
T Consensus 164 l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 164 LQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 99999999999998866322122334778889999997776665554444
No 22
>PF13173 AAA_14: AAA domain
Probab=98.96 E-value=4.6e-09 Score=85.12 Aligned_cols=119 Identities=23% Similarity=0.285 Sum_probs=79.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCC
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTK 257 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 257 (385)
.+++.|.|+.|+|||||+++++++.. ... ..++++..+........ ......+.+.... +
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~--~~~yi~~~~~~~~~~~~-------------~~~~~~~~~~~~~--~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPE--NILYINFDDPRDRRLAD-------------PDLLEYFLELIKP--G 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccc--cceeeccCCHHHHHHhh-------------hhhHHHHHHhhcc--C
Confidence 46899999999999999999998765 122 45555555333211000 0022333333333 6
Q ss_pred cEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhhh-----c-C-CceEEcCCCCHHHH
Q 038663 258 KVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCSK-----M-S-DVTVQIEELGEEDR 316 (385)
Q Consensus 258 r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~-----~-~-~~~~~l~~L~~~~~ 316 (385)
..+|+||+++...+|......+.+.....+|++|+.+...... + + ...++|.||+-.|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7889999999988888766666555567899999988765422 1 2 45789999997763
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=5e-08 Score=93.38 Aligned_cols=189 Identities=15% Similarity=0.135 Sum_probs=108.7
Q ss_pred CCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcC
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKF 234 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~ 234 (385)
+.+++|.+..++.+.+.+..++.. .+.++||+|+||||+|+.+.+.......... .....| ....++....-.
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-~pc~~c-----~~c~~~~~~~~~ 88 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-NPCRKC-----IICKEIEKGLCL 88 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-CCCCCC-----HHHHHHhcCCCC
Confidence 456889999999999988776554 5689999999999999999988642111110 000000 000111100000
Q ss_pred -----ccc-cccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcch--hhhhhcCCCCCCCCCeEEEEeeCC-hhhhhhc-
Q 038663 235 -----KIE-EENELQRRATLAKRLRE---RTKKVLIILDDVREKI--NLAVSGIPYGEEGNRCKVIVTSRR-LDVCSKM- 301 (385)
Q Consensus 235 -----~~~-~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~- 301 (385)
... ..... ....+.+.+.. .+++-++||||++... .++.+...+.+....+++|++|.+ ..+...+
T Consensus 89 d~~~~~~~~~~~v~-~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 89 DLIEIDAASRTKVE-EMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred ceEEecccccCCHH-HHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence 000 01111 12222222221 1145699999998653 455555455444456666666644 3333332
Q ss_pred C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHH
Q 038663 302 S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIA 351 (385)
Q Consensus 302 ~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 351 (385)
+ ...+++.+++.++..+.+.+.+......-..+.++.|+..++|.|-.+.
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 2 6789999999999999888866332112223567779999999886433
No 24
>PLN03025 replication factor C subunit; Provisional
Probab=98.95 E-value=9.2e-09 Score=96.83 Aligned_cols=183 Identities=14% Similarity=0.149 Sum_probs=106.3
Q ss_pred CCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCC--HHHHHHHHHHHh
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSD--LRRIQDKIAELL 232 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~--~~~l~~~i~~~l 232 (385)
....++|.++.+..|..++..+..+.+.++|++|+||||+|+.+.+..... .|.. ..+-+..++ .....++++..+
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~-~~~eln~sd~~~~~~vr~~i~~~ 88 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKE-AVLELNASDDRGIDVVRNKIKMF 88 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCcc-ceeeecccccccHHHHHHHHHHH
Confidence 345678888888888888877777788999999999999999999986421 2320 111111121 111122221111
Q ss_pred cCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch--hhhhhcCCCCCCCCCeEEEEeeCCh-hhhh-hcC-CceEE
Q 038663 233 KFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGIPYGEEGNRCKVIVTSRRL-DVCS-KMS-DVTVQ 307 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~-~v~~-~~~-~~~~~ 307 (385)
..... .+.. ++.-+++|||++... ....+...+......+++|+++... .+.. ... +..++
T Consensus 89 ~~~~~-------------~~~~-~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 89 AQKKV-------------TLPP-GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred Hhccc-------------cCCC-CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 00000 0001 156789999998542 2333332232223456677766443 2222 222 57899
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 308 IEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 308 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
+.+++.++....+...+....-.-..+....|++.|+|-.-.+...
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~ 200 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNN 200 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999887733211112356677888898876544433
No 25
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=2.1e-08 Score=103.01 Aligned_cols=192 Identities=14% Similarity=0.127 Sum_probs=112.2
Q ss_pred CCCCCcchHHHHHHHHHHhccCCceE-EEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhc
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVNI-IGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLK 233 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~ 233 (385)
.+..++|.+..+..|.+++..+++.. +.++|+.|+||||+|+.+++.+........ ..+-.|-+ ...+.....
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~-~pCg~C~s-----C~~i~~g~~ 87 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA-TPCGVCSS-----CVEIAQGRF 87 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC-CCCCCchH-----HHHHhcCCC
Confidence 34568899999999999988777765 489999999999999999988653211110 00000100 000000000
Q ss_pred -----Cccc-cccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEee-CChhhhhh-
Q 038663 234 -----FKIE-EENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTS-RRLDVCSK- 300 (385)
Q Consensus 234 -----~~~~-~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-r~~~v~~~- 300 (385)
.... ....+. .+.+.+.+.. .+++-++|||+++.. ..++.|...+.+...++++|++| ....+...
T Consensus 88 ~DviEidAas~~kVDd-IReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TI 166 (944)
T PRK14949 88 VDLIEVDAASRTKVDD-TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTV 166 (944)
T ss_pred ceEEEeccccccCHHH-HHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHH
Confidence 0000 001111 1112221111 126779999999854 45666555554444455555544 44444433
Q ss_pred cC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 301 MS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 301 ~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
.. +..+++++|+.++....+.+.+.......-.+..+.|++.++|.|--+..+
T Consensus 167 lSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 167 LSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 23 789999999999999999987743322223467788999999988644433
No 26
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.94 E-value=2.4e-08 Score=94.75 Aligned_cols=199 Identities=12% Similarity=0.193 Sum_probs=111.2
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHH-HHHHH----
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQ-DKIAE---- 230 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~-~~i~~---- 230 (385)
+..++|++..++.|..++..+..+.+.++|++|+||||+|+.+.+..... .+.. ..+.++.++...-. ..+..
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWEN-NFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-cccc-ceEEechhhhhhcchhhhhcCcch
Confidence 34578999999999999887777788999999999999999999876532 2220 12233332211100 00000
Q ss_pred --HhcCc-cccccHHHHHHHHHHHHHh----cCCcEEEEEeCCCcch--hhhhhcCCCCCCCCCeEEEEeeCChh-hhhh
Q 038663 231 --LLKFK-IEEENELQRRATLAKRLRE----RTKKVLIILDDVREKI--NLAVSGIPYGEEGNRCKVIVTSRRLD-VCSK 300 (385)
Q Consensus 231 --~l~~~-~~~~~~~~~~~~l~~~l~~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~ 300 (385)
.++.. ............+.+.... ...+-+|||||+.... ....+...+......+++|+|+.... +...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchh
Confidence 00000 0000011112222111111 0145589999997542 22233222222233466777765432 2222
Q ss_pred cC--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHH
Q 038663 301 MS--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGA 356 (385)
Q Consensus 301 ~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~ 356 (385)
+. ...+.+.+++.++...++.+.+......-..+..+.|++.++|.+-.+......
T Consensus 172 L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~ 229 (337)
T PRK12402 172 IRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQT 229 (337)
T ss_pred hcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22 668899999999999999887633211223467778889998877666554433
No 27
>PRK08727 hypothetical protein; Validated
Probab=98.93 E-value=2e-08 Score=90.02 Aligned_cols=160 Identities=14% Similarity=0.181 Sum_probs=94.5
Q ss_pred HHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHH
Q 038663 164 KALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQ 243 (385)
Q Consensus 164 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~ 243 (385)
+.+..+.....+.....+.|+|++|+|||+|++.+++...... . ...+++..+...-+.
T Consensus 27 n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~--~--~~~y~~~~~~~~~~~----------------- 85 (233)
T PRK08727 27 GLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG--R--SSAYLPLQAAAGRLR----------------- 85 (233)
T ss_pred HHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--C--cEEEEeHHHhhhhHH-----------------
Confidence 3444444433344445699999999999999999998865432 2 344544322111111
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCcch---hhhhhcCCCCC--CCCCeEEEEeeCChh---------hhhhcC-CceEEc
Q 038663 244 RRATLAKRLRERTKKVLIILDDVREKI---NLAVSGIPYGE--EGNRCKVIVTSRRLD---------VCSKMS-DVTVQI 308 (385)
Q Consensus 244 ~~~~l~~~l~~~~kr~LlVlDdv~~~~---~~~~l~~~~~~--~~~gs~iivTtr~~~---------v~~~~~-~~~~~l 308 (385)
...+.+. +.-+|||||+.... .|......+.+ ...|..+|+|++... ..+.+. ...+++
T Consensus 86 ---~~~~~l~---~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l 159 (233)
T PRK08727 86 ---DALEALE---GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGL 159 (233)
T ss_pred ---HHHHHHh---cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEe
Confidence 1111222 45699999997432 23221111111 123567999998532 223333 568999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHH
Q 038663 309 EELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAI 350 (385)
Q Consensus 309 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 350 (385)
++++.++...++++++....-.--++...-|++.|+|-.-.+
T Consensus 160 ~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 160 PVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 999999999999987632211222467777889998666555
No 28
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=2e-08 Score=99.99 Aligned_cols=195 Identities=12% Similarity=0.124 Sum_probs=112.3
Q ss_pred CCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCC-CCceEEEEEcCCHHHHHHHHHHH--
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPY-DKAHVIVAESSDLRRIQDKIAEL-- 231 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~~~wv~vs~~~~l~~~i~~~-- 231 (385)
+.+++|.+..++.|.+++..+++. .+.++|+.|+||||+|+.+.+.+.-...- ......--| ....-...|...
T Consensus 15 FddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC--G~C~sC~~I~aG~h 92 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC--GQCRACTEIDAGRF 92 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC--cccHHHHHHHcCCC
Confidence 456889999999999999877665 45899999999999999999876521000 000000000 000011111100
Q ss_pred ---hcCcc-ccccHHHHHHHHHHHHH---hcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEE-EEeeCChhhhhhc
Q 038663 232 ---LKFKI-EEENELQRRATLAKRLR---ERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKV-IVTSRRLDVCSKM 301 (385)
Q Consensus 232 ---l~~~~-~~~~~~~~~~~l~~~l~---~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~i-ivTtr~~~v~~~~ 301 (385)
+.... .....++.. .+.+.+. ..++.-++|||+++.. ..++.|...+.+...++++ ++||....+...+
T Consensus 93 pDviEIdAas~~gVDdIR-eLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTI 171 (700)
T PRK12323 93 VDYIEMDAASNRGVDEMA-QLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 171 (700)
T ss_pred CcceEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHH
Confidence 00000 011112111 1222211 1125668999999854 4566665555444445554 5555555554333
Q ss_pred C--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 302 S--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 302 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
. +..+.+.+++.++..+.+.+.++........+..+.|++.++|.|.-...+
T Consensus 172 rSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 172 LSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 789999999999999999987743322222356677999999998655444
No 29
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=1.6e-08 Score=98.17 Aligned_cols=197 Identities=14% Similarity=0.110 Sum_probs=113.5
Q ss_pred CCCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhc
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLK 233 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~ 233 (385)
.+..++|.+..+..|..++..+... .+.++|+.|+||||+|+.+.+......... ......|- +-..+.......+.
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~-~~pCg~C~-sC~~i~~g~~~dvi 93 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG-NEPCNECT-SCLEITKGISSDVL 93 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC-ccccCCCc-HHHHHHccCCccce
Confidence 3456889998999999998877765 589999999999999999998765321100 00011111 11111111100000
Q ss_pred -CccccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEE-EeeCChhhhhhcC--Cc
Q 038663 234 -FKIEEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVI-VTSRRLDVCSKMS--DV 304 (385)
Q Consensus 234 -~~~~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTtr~~~v~~~~~--~~ 304 (385)
..............+.+.+.. .++.-++|||+++.. ..++.+...+.+....+.+| .||....+...+. +.
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq 173 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQ 173 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhh
Confidence 000000001112222222221 125668999999854 45666655554433455554 4555455533333 77
Q ss_pred eEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 305 TVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 305 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
.|.+.+++.++....+.+.+......-..+....|++.++|.+--...+
T Consensus 174 ~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 174 DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHH
Confidence 8999999999999999888743322223467788999999998544333
No 30
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=7.5e-09 Score=102.46 Aligned_cols=199 Identities=14% Similarity=0.139 Sum_probs=115.1
Q ss_pred CCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHHHHHh
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKIAELL 232 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i~~~l 232 (385)
+..++|.+...+.|..++..+... .+.++|++|+||||+|+.+++.......+. ...|.|.+ ........-+..+
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~--~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDP--KPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCC--CCCCcChhhHHHhcCCCCceEEe
Confidence 345789888888898888877655 459999999999999999999875322232 23444433 0000000000000
Q ss_pred cCccccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeC-Chhhhhhc-C-Cc
Q 038663 233 KFKIEEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSR-RLDVCSKM-S-DV 304 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr-~~~v~~~~-~-~~ 304 (385)
.. ....... ....+.+.+.. .+++-++|||+++.. ..+..+...+......+.+|++|. ...+...+ . +.
T Consensus 91 ~~-~~~~~vd-~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 91 DA-ASNNSVE-DVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred cc-cccCCHH-HHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceE
Confidence 00 0011111 12223332221 115668999999754 345555555544444555555553 44443333 2 67
Q ss_pred eEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHH-HHHHHHhc
Q 038663 305 TVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAI-AIVAGALR 358 (385)
Q Consensus 305 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai-~~~~~~L~ 358 (385)
.+++.+++.++....+.+.+......-..+....|++.++|.+--+ ..+-.++.
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLA 223 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 8999999999999999987733211123366778999999988644 33434333
No 31
>PRK09087 hypothetical protein; Validated
Probab=98.89 E-value=3.4e-08 Score=87.95 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=98.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERT 256 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 256 (385)
..+.+.|+|++|+|||+|++.+++.... . +++. ..+...+. ..+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~--------~-~i~~---~~~~~~~~--------------------~~~~--- 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA--------L-LIHP---NEIGSDAA--------------------NAAA--- 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC--------E-EecH---HHcchHHH--------------------Hhhh---
Confidence 3467899999999999999998876431 1 1111 11111111 1111
Q ss_pred CcEEEEEeCCCcc----hhhhhhcCCCCCCCCCeEEEEeeCCh---------hhhhhcC-CceEEcCCCCHHHHHHHHHH
Q 038663 257 KKVLIILDDVREK----INLAVSGIPYGEEGNRCKVIVTSRRL---------DVCSKMS-DVTVQIEELGEEDRLKLFKQ 322 (385)
Q Consensus 257 kr~LlVlDdv~~~----~~~~~l~~~~~~~~~gs~iivTtr~~---------~v~~~~~-~~~~~l~~L~~~~~~~lf~~ 322 (385)
.-+|+|||+... ..+-.+...+ ...|..+|+|++.. ...+.+. ..++++++++.++-.+++++
T Consensus 88 -~~~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 88 -EGPVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred -cCeEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 237888999643 1122211111 12356788888743 2344444 68999999999999999999
Q ss_pred hhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHh------cCCCCCCcchhhhhhHHHHHHHH
Q 038663 323 IARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGAL------RGKLANESNESLVNIWNDAVEEV 380 (385)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L------~~~~~~~~~~~~~~~W~~~~~~l 380 (385)
.+....-.-.+++..-|++.+.|..-++..+-..| ..+. ++....+.+++.+
T Consensus 165 ~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~------it~~~~~~~l~~~ 222 (226)
T PRK09087 165 LFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSR------ITRALAAEVLNEM 222 (226)
T ss_pred HHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHhh
Confidence 88433222234777888888888887777533333 2332 2688888888765
No 32
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=7.7e-08 Score=94.55 Aligned_cols=209 Identities=15% Similarity=0.164 Sum_probs=115.6
Q ss_pred CCCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhCC--CCCceEEEEEcCCHHHHHHHHHHHh
Q 038663 156 YVPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIAP--YDKAHVIVAESSDLRRIQDKIAELL 232 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~~~wv~vs~~~~l~~~i~~~l 232 (385)
+..++|.+.....|...+..+.. ..+.++||+|+||||+|+.+.+....... +.+ | -.| .....+...-
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~p-c--~~c-----~~c~~i~~g~ 84 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEP-C--NEC-----RACRSIDEGT 84 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCC-C--ccc-----HHHHHHhcCC
Confidence 45688988888888888877766 45799999999999999999987642110 000 0 000 0000000000
Q ss_pred -----cCcc-ccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEE-eeCChhhhhh
Q 038663 233 -----KFKI-EEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIV-TSRRLDVCSK 300 (385)
Q Consensus 233 -----~~~~-~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-Ttr~~~v~~~ 300 (385)
.... ....... ...+.+.... .+++-++|+|+++.. ...+.+...+.+....+.+|+ |+....+...
T Consensus 85 ~~dv~el~aa~~~gid~-iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~ 163 (472)
T PRK14962 85 FMDVIELDAASNRGIDE-IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPT 163 (472)
T ss_pred CCccEEEeCcccCCHHH-HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHH
Confidence 0000 0001111 1122222221 015669999999754 334444444433333444444 4433444333
Q ss_pred cC--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhC-CChHHHHHHHHHhcCCCCCCcchhhhhhHHHHH
Q 038663 301 MS--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACG-SLPSAIAIVAGALRGKLANESNESLVNIWNDAV 377 (385)
Q Consensus 301 ~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~-GlPlai~~~~~~L~~~~~~~~~~~~~~~W~~~~ 377 (385)
+. ...+.+.+++.++....+.+.+......-..+....|++.++ +++.++..+-.+...... .++.+..+.++
T Consensus 164 L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~----~It~e~V~~~l 239 (472)
T PRK14962 164 IISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEG----KITLETVHEAL 239 (472)
T ss_pred HhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHH
Confidence 33 788999999999999999887733211222456677888775 567787777665432210 12566666554
No 33
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.87 E-value=9.8e-07 Score=89.88 Aligned_cols=198 Identities=18% Similarity=0.167 Sum_probs=116.7
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCC--CceEEEEEcC------CHHHHHHH
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYD--KAHVIVAESS------DLRRIQDK 227 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~~~wv~vs------~~~~l~~~ 227 (385)
+..++|++..+..+...+.......+.|+|++|+||||||+.+++.......+. . ..-|+.+. +...+...
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~-~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAE-DAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccC-CCCeEEEechhccCCHHHHhHH
Confidence 445789988888888877666667899999999999999999998765433321 0 22344443 12222111
Q ss_pred H---------------HHHhcCc----------------cccc--cHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhh
Q 038663 228 I---------------AELLKFK----------------IEEE--NELQRRATLAKRLRERTKKVLIILDDVREK--INL 272 (385)
Q Consensus 228 i---------------~~~l~~~----------------~~~~--~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~ 272 (385)
+ +...+.. .++. =.......+.+.+++ +++.++-|+.|.. ..|
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~--~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED--KRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh--CeEEeecceeccCCcccc
Confidence 1 1111100 0000 012345677777777 7787776666543 345
Q ss_pred hhhcCCCCCCCCCeEEEE--eeCChh-hhhhc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCCh
Q 038663 273 AVSGIPYGEEGNRCKVIV--TSRRLD-VCSKM-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP 347 (385)
Q Consensus 273 ~~l~~~~~~~~~gs~iiv--Ttr~~~-v~~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (385)
..+...+....+...+++ ||++.. +...+ . ...+.+.+++.++.+.++.+.+......-..++.+.|.+.++.-+
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~~gR 389 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTIEGR 389 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCCcHH
Confidence 555544444443333443 555433 22222 2 457889999999999999998753211122456666777676667
Q ss_pred HHHHHHHHH
Q 038663 348 SAIAIVAGA 356 (385)
Q Consensus 348 lai~~~~~~ 356 (385)
.++..++..
T Consensus 390 raln~L~~~ 398 (615)
T TIGR02903 390 KAVNILADV 398 (615)
T ss_pred HHHHHHHHH
Confidence 777777544
No 34
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=1e-07 Score=94.21 Aligned_cols=192 Identities=13% Similarity=0.104 Sum_probs=111.0
Q ss_pred CCCCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCc---eEEEEEcCCHHHHHHHHHH
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKA---HVIVAESSDLRRIQDKIAE 230 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~---~~~wv~vs~~~~l~~~i~~ 230 (385)
.+.+++|.+..+..|...+..+.. ..+.++|++|+||||+|+.+++........... ...-.|.+ ...+..
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~-----C~~i~~ 93 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN-----CISFNN 93 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH-----HHHHhc
Confidence 345678999888888887766553 578899999999999999999886432111000 00000100 011110
Q ss_pred HhcC-----c-cccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEE-EeeCChhhh
Q 038663 231 LLKF-----K-IEEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVI-VTSRRLDVC 298 (385)
Q Consensus 231 ~l~~-----~-~~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTtr~~~v~ 298 (385)
.... . ......+.... +.+.... .+++-++||||++.. ..++.+...+.+....+.+| +||+...+.
T Consensus 94 ~~h~Dv~eidaas~~~vd~Ir~-iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 94 HNHPDIIEIDAASKTSVDDIRR-IIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred CCCCcEEEeeccCCCCHHHHHH-HHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 0000 0 00111111111 1121111 016678999999864 45666655554444455555 455555554
Q ss_pred hhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 038663 299 SKMS--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAI 352 (385)
Q Consensus 299 ~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 352 (385)
..+. +..+++.+++.++....+.+.+......-..+....|++.++|.+--+..
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4333 67899999999999999998884332122235667799999997755433
No 35
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.85 E-value=1.2e-07 Score=89.29 Aligned_cols=181 Identities=13% Similarity=0.112 Sum_probs=106.8
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCC--HHHHHHHHHHHhc
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSD--LRRIQDKIAELLK 233 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~--~~~l~~~i~~~l~ 233 (385)
..+++|++..++.+..++.....+.+.|+|++|+||||+++.+.+...... +.. ..+-+..++ ........+..+.
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~-~~i~~~~~~~~~~~~~~~~i~~~~ 93 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRE-NFLELNASDERGIDVIRNKIKEFA 93 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-ccc-ceEEeccccccchHHHHHHHHHHH
Confidence 445889999999999999877777789999999999999999998864321 220 111111111 1111111111110
Q ss_pred CccccccHHHHHHHHHHHH-HhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCCh-hhhhhc-C-CceEE
Q 038663 234 FKIEEENELQRRATLAKRL-RERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRL-DVCSKM-S-DVTVQ 307 (385)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l-~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~-~-~~~~~ 307 (385)
... .....+-++++|+++.. .....+...+......+.+|+++... .+.... . ...++
T Consensus 94 ----------------~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 94 ----------------RTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred ----------------hcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 000 00014568999998644 22333332232223345677666432 222212 2 56789
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 308 IEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 308 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
+.+++.++....+.+.+......-..+....+++.++|.+--+...-
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999998877433212234677788999999887644433
No 36
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.85 E-value=3.6e-08 Score=80.04 Aligned_cols=113 Identities=25% Similarity=0.376 Sum_probs=77.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhC---CCCCceEEEEEcC---CHHHHHHHHHHHhcCcccc-ccHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIA---PYDKAHVIVAESS---DLRRIQDKIAELLKFKIEE-ENELQRRATLA 249 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~~-~~~~~~~~~l~ 249 (385)
+.+++.|+|++|+|||++++.+.+...... .-. ..+|+..+ +...+...++..++..... .+...+...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHP--DVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCE--EEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCC--cEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 346899999999999999999999864310 112 66788887 6889999999999886655 56677778888
Q ss_pred HHHHhcCCcEEEEEeCCCcc-h--hhhhhcCCCCCCCCCeEEEEeeCC
Q 038663 250 KRLRERTKKVLIILDDVREK-I--NLAVSGIPYGEEGNRCKVIVTSRR 294 (385)
Q Consensus 250 ~~l~~~~kr~LlVlDdv~~~-~--~~~~l~~~~~~~~~gs~iivTtr~ 294 (385)
+.+... +..+|||||++.. . .+..+...+ + ..+.++|+..+.
T Consensus 81 ~~l~~~-~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRR-RVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHC-TEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HHHHhc-CCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 999883 3459999999765 2 233332222 2 567788877765
No 37
>PRK04195 replication factor C large subunit; Provisional
Probab=98.84 E-value=6.2e-08 Score=96.29 Aligned_cols=179 Identities=17% Similarity=0.207 Sum_probs=107.8
Q ss_pred CCCCCcchHHHHHHHHHHhcc----CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCC--HHHHHHHH
Q 038663 155 DYVPLESSSKALNSIMKLLKD----EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSD--LRRIQDKI 228 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~--~~~l~~~i 228 (385)
....++|++..++.|.+|+.. ...+.+.|+|++|+||||+|+.++++.. |. .. -++.++ ....+..+
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~--~i-elnasd~r~~~~i~~~ 84 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE--VI-ELNASDQRTADVIERV 84 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC--EE-EEcccccccHHHHHHH
Confidence 345688999999999998863 2267899999999999999999999874 43 22 223331 12233333
Q ss_pred HHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch------hhhhhcCCCCCCCCCeEEEEeeCChh-hhh-h
Q 038663 229 AELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI------NLAVSGIPYGEEGNRCKVIVTSRRLD-VCS-K 300 (385)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~iivTtr~~~-v~~-~ 300 (385)
+....... ..... ++-+|||||++... .+..+...+. ..+..+|+|+.... ... .
T Consensus 85 i~~~~~~~-------------sl~~~--~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 85 AGEAATSG-------------SLFGA--RRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHhhccC-------------cccCC--CCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 22221100 00012 67899999997542 1333322222 12344666664332 211 2
Q ss_pred c-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHh
Q 038663 301 M-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGAL 357 (385)
Q Consensus 301 ~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L 357 (385)
+ . +..+.+.+++.++....+.+.+......-..++...|++.|+|-.-.+......+
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2 2 6789999999999999988877322111123667778888888666555444333
No 38
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=8.4e-08 Score=95.37 Aligned_cols=182 Identities=18% Similarity=0.219 Sum_probs=108.5
Q ss_pred CCCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhC-------------------CCCCceEE
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIA-------------------PYDKAHVI 214 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~~~~ 214 (385)
.+..++|.+..+..|...+..+... .+.++|+.|+||||+|+.+++.+.... .|. ..+
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~--dli 91 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFI--DLI 91 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCC--ceE
Confidence 3456889999999999988876554 578999999999999999998754211 111 111
Q ss_pred EEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHH-HHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEE-E
Q 038663 215 VAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKR-LRERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVI-V 290 (385)
Q Consensus 215 wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii-v 290 (385)
++...+ .....+...+...+... ..+ ++-++||||++.. ..++.+...+.+....+.+| +
T Consensus 92 eidaas--------------~~gvd~ir~ii~~~~~~p~~g--~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 92 EIDAAS--------------RTGVEETKEILDNIQYMPSQG--RYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred Eeeccc--------------ccCHHHHHHHHHHHHhhhhcC--CcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 111100 00000111122222111 123 6679999999754 34555554444433455454 5
Q ss_pred eeCChhhhhhc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCCh-HHHHHHH
Q 038663 291 TSRRLDVCSKM-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-SAIAIVA 354 (385)
Q Consensus 291 Ttr~~~v~~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~~ 354 (385)
||....+...+ . +..+++.+++.++....+.+.+.......-......|++.++|-+ .|+..+-
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 55544444332 3 789999999999998888886632211223356677889999955 4554443
No 39
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=8.1e-08 Score=96.02 Aligned_cols=189 Identities=13% Similarity=0.105 Sum_probs=109.5
Q ss_pred CCCCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhc
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLK 233 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~ 233 (385)
.+..++|.+...+.|.+++..+.. ..+.++|+.|+||||+|+.+.+.+........ .. | +.....+.+...-.
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~-~p---C--g~C~sC~~I~~g~h 86 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTS-TP---C--EVCATCKAVNEGRF 86 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCC-CC---C--ccCHHHHHHhcCCC
Confidence 345689999999999999987664 56789999999999999999987642111110 00 0 00001111110000
Q ss_pred -----Ccc-ccccHHHHHHHHHHHH-----HhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCCh-hhhh
Q 038663 234 -----FKI-EEENELQRRATLAKRL-----RERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRL-DVCS 299 (385)
Q Consensus 234 -----~~~-~~~~~~~~~~~l~~~l-----~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~ 299 (385)
... .....+.. ..+...+ .+ +.-++|||+++.. ...+.+...+.+...++++|++|... .+..
T Consensus 87 pDviEIDAAs~~~VddI-Reli~~~~y~P~~g--k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 87 IDLIEIDAASRTKVEDT-RELLDNVPYAPTQG--RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CceEEecccccCCHHHH-HHHHHHHhhhhhcC--CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 000 00111111 1121111 23 5668999999854 34555544443434456676666543 3322
Q ss_pred h-cC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 038663 300 K-MS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAI 352 (385)
Q Consensus 300 ~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 352 (385)
. .. +..+++++++.++....+.+.+......--.+....|++.++|-+-.+..
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 23 78999999999999999988774332222335667799999997754443
No 40
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.83 E-value=9.4e-08 Score=87.67 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=99.6
Q ss_pred HHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHHHHhcCccccccHHHHH
Q 038663 169 IMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIAELLKFKIEEENELQRR 245 (385)
Q Consensus 169 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~~~~~~~~~ 245 (385)
|.+.+..+.+..+.+|||+|+||||||+.+....+.. ...+|..| ....=.+.|+++-.
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~------SyrfvelSAt~a~t~dvR~ife~aq------------ 214 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH------SYRFVELSATNAKTNDVRDIFEQAQ------------ 214 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC------ceEEEEEeccccchHHHHHHHHHHH------------
Confidence 4445557888999999999999999999999987743 23455555 11111222322211
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChhh---hhhcC-CceEEcCCCCHHHHHHH
Q 038663 246 ATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLDV---CSKMS-DVTVQIEELGEEDRLKL 319 (385)
Q Consensus 246 ~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~v---~~~~~-~~~~~l~~L~~~~~~~l 319 (385)
. ...+.+ +|-+|++|+|+.- .+.+ +..|..+++.-.-|-.||.+.+. +..+. +.++.|++|+.++...+
T Consensus 215 -~-~~~l~k--rkTilFiDEiHRFNksQQD-~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~i 289 (554)
T KOG2028|consen 215 -N-EKSLTK--RKTILFIDEIHRFNKSQQD-TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTI 289 (554)
T ss_pred -H-HHhhhc--ceeEEEeHHhhhhhhhhhh-cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHH
Confidence 1 112334 8999999999854 2333 33444445545566678888875 33344 78999999999999999
Q ss_pred HHHhh---CCC-------CCc---chHHHHHHHHHHhCCChH
Q 038663 320 FKQIA---RLP-------DSE---AFEGAAKVIVKACGSLPS 348 (385)
Q Consensus 320 f~~~~---~~~-------~~~---~~~~~~~~I~~~c~GlPl 348 (385)
+.+.. +.. ..+ -...+.+-++..|+|=.-
T Consensus 290 L~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 290 LMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 98843 222 111 123456667778888654
No 41
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.83 E-value=5.4e-08 Score=100.04 Aligned_cols=172 Identities=18% Similarity=0.226 Sum_probs=102.3
Q ss_pred CCCCCcchHHHHH---HHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHHH
Q 038663 155 DYVPLESSSKALN---SIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKIA 229 (385)
Q Consensus 155 ~~~~~~gr~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i~ 229 (385)
.+.+|+|++..+. .|...+..+....+.|+|++|+||||||+.+++... .+|. . +..+ ....
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~--~---lna~~~~i~d------ 92 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFS--S---LNAVLAGVKD------ 92 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccce--e---ehhhhhhhHH------
Confidence 3456888887763 566677777778889999999999999999998765 2343 0 0100 1111
Q ss_pred HHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEE--eeCChh--hhh-hcC
Q 038663 230 ELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIV--TSRRLD--VCS-KMS 302 (385)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--Ttr~~~--v~~-~~~ 302 (385)
.........+.+...+++.+|+|||++.. ..++.+...+ + .|+.+++ ||.+.. +.. ...
T Consensus 93 -----------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l-E--~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 93 -----------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV-E--NGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred -----------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh-c--CceEEEEEecCCChHhhhhhHhhc
Confidence 01111122222221126779999999754 3444454333 2 2444444 344432 212 222
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhC-------CCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 303 -DVTVQIEELGEEDRLKLFKQIAR-------LPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 303 -~~~~~l~~L~~~~~~~lf~~~~~-------~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
...+.+++|+.++...++.+.+. .....-..+..+.|++.+.|..-.+.-+
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~ 217 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNA 217 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 66899999999999999998763 2212223466778888998865443333
No 42
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.81 E-value=2.3e-07 Score=88.76 Aligned_cols=180 Identities=14% Similarity=0.185 Sum_probs=108.1
Q ss_pred CCCCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhC--------------------CCCCceE
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIA--------------------PYDKAHV 213 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~F~~~~~ 213 (385)
....++|.+..++.|.+++..+.. ..+.++|++|+||||+|+.+.+...... +++ .
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~--~- 88 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD--V- 88 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC--E-
Confidence 345678999999999998876654 4678999999999999999998864211 121 1
Q ss_pred EEEEcC--CHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEE
Q 038663 214 IVAESS--DLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVI 289 (385)
Q Consensus 214 ~wv~vs--~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii 289 (385)
.++..+ ....-.+.+.+.+.. .-..+ ++-++|+|++... .....+...+.+....+.+|
T Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~---------------~p~~~--~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 89 IEIDAASNNGVDDIREILDNVKY---------------APSSG--KYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred EEeeccccCCHHHHHHHHHHHhc---------------CcccC--CceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 111111 000011111111110 00112 4558889998644 33444444443333456666
Q ss_pred EeeCChh-hhhhc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 290 VTSRRLD-VCSKM-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 290 vTtr~~~-v~~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
++|.+.. +...+ . ...+++.+++.++....+...+......-..+.+..|++.++|.|..+....
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 6665443 33222 3 6788999999999999998876322111223677788999999887665544
No 43
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=1e-07 Score=92.30 Aligned_cols=194 Identities=12% Similarity=0.085 Sum_probs=110.2
Q ss_pred CCCCcchHHHHHHHHHHhccCCceE-EEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEc---C-CHHHHHHHHHH
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNI-IGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAES---S-DLRRIQDKIAE 230 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~v---s-~~~~l~~~i~~ 230 (385)
+..++|.+..++.|..++..+.... +.++||+|+||||+|+.+.+...-..... ...|..- + ..-...+.+..
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~--~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMID--DADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcC--cccccccCCCCCCCCHHHHHHhc
Confidence 4468899988899999888776654 88999999999999999998864321111 0000000 0 00011111111
Q ss_pred HhcCc-----c-ccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEee-CChhhh
Q 038663 231 LLKFK-----I-EEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTS-RRLDVC 298 (385)
Q Consensus 231 ~l~~~-----~-~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-r~~~v~ 298 (385)
..... . .....+. ...+.+.+.. .+.+-++|+||++.. ..++.+...+.+....+.+|++| +...+.
T Consensus 93 ~~~~n~~~~~~~~~~~id~-Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDD-IRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred CCCCCeEeecccccCCHHH-HHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 00000 0 0011111 1223333321 015668899998754 35555544444444455555544 444444
Q ss_pred hhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 038663 299 SKMS--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAI 352 (385)
Q Consensus 299 ~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 352 (385)
..+. ...+++.+++.++....+...+......-..+.+..|++.++|.+--+..
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3333 67899999999999998888773221122346778899999997754444
No 44
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.5e-07 Score=94.88 Aligned_cols=197 Identities=13% Similarity=0.167 Sum_probs=110.8
Q ss_pred CCCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHh-
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELL- 232 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l- 232 (385)
.+.+++|.+..+..|.+++..+... .+.++|+.|+||||+|+.+.+.+--.........-.... +.......|...-
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC-g~C~~C~~i~~g~h 92 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC-GVCQACRDIDSGRF 92 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC-CccHHHHHHHcCCC
Confidence 3456889999999999999877664 568999999999999999987754211000000000000 0111111110000
Q ss_pred ----cCcc-ccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEe-eCChhhhhh-
Q 038663 233 ----KFKI-EEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVT-SRRLDVCSK- 300 (385)
Q Consensus 233 ----~~~~-~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT-tr~~~v~~~- 300 (385)
.... .....+.. ..+.+.+.. .++.-++|||+++.. ..++.+...+.+....+.+|++ |....+...
T Consensus 93 ~D~~eldaas~~~Vd~i-Reli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TI 171 (618)
T PRK14951 93 VDYTELDAASNRGVDEV-QQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTV 171 (618)
T ss_pred CceeecCcccccCHHHH-HHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHH
Confidence 0000 00111111 122222221 014558899999854 4566665555444445555554 444444322
Q ss_pred cC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 301 MS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 301 ~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
.. +..+++++++.++....+.+.+......-..+....|++.++|.+--+..+
T Consensus 172 lSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 172 LSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33 789999999999999999987743322222366778899999977555444
No 45
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=6.2e-07 Score=84.96 Aligned_cols=194 Identities=11% Similarity=0.129 Sum_probs=113.7
Q ss_pred CCCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCC--CCCceEEEEEcC-CHHHHHHHHHH
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAP--YDKAHVIVAESS-DLRRIQDKIAE 230 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~~~wv~vs-~~~~l~~~i~~ 230 (385)
....++|.+.....+...+..+... .+.|+|+.|+||||+|..+.+.+-.... +. ... .... ......+.+..
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~--~~~-~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEA--PET-LADPDPASPVWRQIAQ 97 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccC--ccc-cCCCCCCCHHHHHHHc
Confidence 4456899999999999998877654 5899999999999999999988643110 11 000 0001 11122233322
Q ss_pred H-------hcCcc--------ccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeE-EE
Q 038663 231 L-------LKFKI--------EEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCK-VI 289 (385)
Q Consensus 231 ~-------l~~~~--------~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~-ii 289 (385)
. +..+. .....++ ...+.+++.. .+++-++|||+++.. ...+.+...+.+...++. |+
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 1 10000 0111222 2344455442 126678999999854 333444333333223344 45
Q ss_pred EeeCChhhhhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 290 VTSRRLDVCSKMS--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 290 vTtr~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
+|++...+..... +..+++.+++.++..+++.+.. .... ...+....|++.++|.|.....+.
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~-~~~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLG-SSQG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhh-cccC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5545444433332 7899999999999999998843 2222 223556789999999998665544
No 46
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.80 E-value=1.1e-07 Score=84.74 Aligned_cols=175 Identities=16% Similarity=0.162 Sum_probs=109.3
Q ss_pred CCCCCcchHHHHHHHHHHhc-----cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHH
Q 038663 155 DYVPLESSSKALNSIMKLLK-----DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIA 229 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~ 229 (385)
.+.+|+|.++..+.|.-.+. ++.+-.+.++||+|.||||||+.+.++..+. +. . +-++.
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k----~--tsGp~-------- 87 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LK----I--TSGPA-------- 87 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eE----e--ccccc--------
Confidence 34578999888887766664 4567899999999999999999999998854 22 1 11100
Q ss_pred HHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-hhhh-hcCCCC-------------------CCCCCeEE
Q 038663 230 ELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI-NLAV-SGIPYG-------------------EEGNRCKV 288 (385)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-~~~~-l~~~~~-------------------~~~~gs~i 288 (385)
-.....++ .+...|+ ..=++++|+++... ...+ +..++. +-.+-+-|
T Consensus 88 --------leK~gDla-aiLt~Le---~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 88 --------LEKPGDLA-AILTNLE---EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred --------ccChhhHH-HHHhcCC---cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 00001111 1111122 34455666665431 0011 011000 01123567
Q ss_pred EEeeCChhhhhhcC---CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHh
Q 038663 289 IVTSRRLDVCSKMS---DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGAL 357 (385)
Q Consensus 289 ivTtr~~~v~~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L 357 (385)
-.|||...+.+.+. ..+.+|+..+.+|..++..+.++.-...--++.+.+|+++..|-|--..-+-+..
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 88999988766655 6788999999999999999988443333334778899999999997665554443
No 47
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=3.6e-07 Score=85.85 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=109.9
Q ss_pred CCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhh----hhCCCCCceEEEEEcC----CHHHHHHH
Q 038663 157 VPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQID----TIAPYDKAHVIVAESS----DLRRIQDK 227 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~----~~~~F~~~~~~wv~vs----~~~~l~~~ 227 (385)
.+++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+++.+- ...|.+ ...|.... ...+ .++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D--~~~~~~~~~~~i~v~~-ir~ 80 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVD--IIEFKPINKKSIGVDD-IRN 80 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCC--eEEeccccCCCCCHHH-HHH
Confidence 3577888888999999876654 4668999999999999999998752 223455 44444321 2222 122
Q ss_pred HHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCC--cchhhhhhcCCCCCCCCCeEEEEeeCChhh-hhh-cC-
Q 038663 228 IAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVR--EKINLAVSGIPYGEEGNRCKVIVTSRRLDV-CSK-MS- 302 (385)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iivTtr~~~v-~~~-~~- 302 (385)
+.+.+... -..+ ++-++|+|+++ +...++.+...+.+...++.+|++|.+.+. ... ..
T Consensus 81 ~~~~~~~~---------------p~~~--~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 81 IIEEVNKK---------------PYEG--DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHHhcC---------------cccC--CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 22222110 0112 45566666654 456677777777666678888888865542 222 22
Q ss_pred CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHH
Q 038663 303 DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIA 351 (385)
Q Consensus 303 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 351 (385)
+..+++.+++.++....+.+..+.. ..+.++.++..|+|.|.-+.
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYNDI----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcCC----CHHHHHHHHHHcCCCHHHHH
Confidence 7899999999999988887765311 12345678889999886443
No 48
>PTZ00202 tuzin; Provisional
Probab=98.78 E-value=8.1e-07 Score=84.42 Aligned_cols=161 Identities=11% Similarity=0.132 Sum_probs=104.0
Q ss_pred CCCCCCcchHHHHHHHHHHhcc---CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHH
Q 038663 154 PDYVPLESSSKALNSIMKLLKD---EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAE 230 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~ 230 (385)
.+...|+||+.++..|...|.+ +..+++.|+|++|+|||||++.+..... + ..+.+...+..+++..++.
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~---~qL~vNprg~eElLr~LL~ 331 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M---PAVFVDVRGTEDTLRSVVK 331 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c---eEEEECCCCHHHHHHHHHH
Confidence 3456799999999999998863 2346999999999999999999996654 2 3444444488999999999
Q ss_pred HhcCccccccHHHHHHHHHHHHH----hcCCcEEEEEeCCCcchh----hhhhcCCCCCCCCCeEEEEeeCChhhh--hh
Q 038663 231 LLKFKIEEENELQRRATLAKRLR----ERTKKVLIILDDVREKIN----LAVSGIPYGEEGNRCKVIVTSRRLDVC--SK 300 (385)
Q Consensus 231 ~l~~~~~~~~~~~~~~~l~~~l~----~~~kr~LlVlDdv~~~~~----~~~l~~~~~~~~~gs~iivTtr~~~v~--~~ 300 (385)
+|+.+.. .....+...|.+.+. ..+++.+|||- +.+... +++. ..+.....-|.|++---.+... +.
T Consensus 332 ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~~ 408 (550)
T PTZ00202 332 ALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIANT 408 (550)
T ss_pred HcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhcc
Confidence 9997322 223444444444442 22366777764 222221 1111 1222333456677655444431 11
Q ss_pred -cC-CceEEcCCCCHHHHHHHHHHhh
Q 038663 301 -MS-DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 301 -~~-~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
+. -..|.+++++.+++..+.++..
T Consensus 409 ~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 409 LLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cCccceeEecCCCCHHHHHHHHhhcc
Confidence 12 5678999999999998887754
No 49
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=5.4e-08 Score=96.94 Aligned_cols=192 Identities=13% Similarity=0.171 Sum_probs=108.6
Q ss_pred CCCCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHHHHH
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKIAEL 231 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i~~~ 231 (385)
.+.+++|++..++.|.+++..+.. +.+.++||.|+||||+|+.+.+.+.... |.... +.....+.+...
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~--------~~~~~~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN--------PKDGDCCNSCSVCESINTN 85 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC--------CCCCCCCcccHHHHHHHcC
Confidence 345688999999999998876554 4688999999999999999998864211 11110 111111111111
Q ss_pred hcCc---c---ccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEE-eeCChhhhh
Q 038663 232 LKFK---I---EEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIV-TSRRLDVCS 299 (385)
Q Consensus 232 l~~~---~---~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-Ttr~~~v~~ 299 (385)
.... . .....++ .+.+.+.+.. ..++-++|+|+++.. ..+..+...+.+....+.+|+ |+....+..
T Consensus 86 ~h~DiieIdaas~igVd~-IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 86 QSVDIVELDAASNNGVDE-IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCceEEeccccccCHHH-HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 0000 0 0011111 1122221111 013446999998753 445555444433333455554 444444433
Q ss_pred h-cC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChH-HHHHHHH
Q 038663 300 K-MS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPS-AIAIVAG 355 (385)
Q Consensus 300 ~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~~ 355 (385)
. .. +..+++.+++.++....+.+.+......-..+.+..|++.++|.+- |+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 33 7789999999999999998876322111223567789999999654 5554444
No 50
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=1.4e-07 Score=95.17 Aligned_cols=192 Identities=13% Similarity=0.120 Sum_probs=111.0
Q ss_pred CCCCCcchHHHHHHHHHHhccCCceE-EEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHh-
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVNI-IGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELL- 232 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l- 232 (385)
.+.+++|.+..+..|.+.+..+.... +.++|+.|+||||+|+.+.+.+.....+.. .. | ......+.|...-
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-~p---C--g~C~~C~~i~~g~~ 87 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-TP---C--GECDNCREIEQGRF 87 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-CC---C--CCCHHHHHHHcCCC
Confidence 34568899999999999888776654 689999999999999999987653211110 00 0 0011111111000
Q ss_pred ----cCccc-cccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEE-EEeeCChhhhhh-
Q 038663 233 ----KFKIE-EENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKV-IVTSRRLDVCSK- 300 (385)
Q Consensus 233 ----~~~~~-~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~i-ivTtr~~~v~~~- 300 (385)
..... ....+. ...+.+.+.. .++.-++|||+++.. ...+.+...+.+....+++ ++||....+...
T Consensus 88 ~D~ieidaas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 88 VDLIEIDAASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCceeecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 00000 011111 1222222221 126668999999854 4555554444443345544 445555555433
Q ss_pred cC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 301 MS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 301 ~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
.. +..+++.+|+.++....+.+.+.........+....|++.++|.+--+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33 789999999999999999887732211222356677999999977644433
No 51
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=3.2e-07 Score=90.01 Aligned_cols=191 Identities=12% Similarity=0.071 Sum_probs=108.7
Q ss_pred CCCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhc
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLK 233 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~ 233 (385)
.+.+++|.+..++.|.+.+..+... .+.++|+.|+||||+|+.+.+...-..... .. -| ....-...|.....
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~--~~--pC--g~C~~C~~i~~~~~ 84 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPT--SD--PC--GTCHNCISIKNSNH 84 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCC--CC--Cc--cccHHHHHHhccCC
Confidence 3456889999899998888776665 799999999999999999987542110000 00 00 00001111111000
Q ss_pred Ccc------ccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEee-CChhhhhhc
Q 038663 234 FKI------EEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTS-RRLDVCSKM 301 (385)
Q Consensus 234 ~~~------~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-r~~~v~~~~ 301 (385)
... .....+. ...+.+.... ..+.-++|||+++.. ..++.+...+.+....+.+|++| ....+...+
T Consensus 85 ~Dv~eidaas~~~vdd-IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI 163 (491)
T PRK14964 85 PDVIEIDAASNTSVDD-IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTI 163 (491)
T ss_pred CCEEEEecccCCCHHH-HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHH
Confidence 000 0001111 1111111111 015668999999754 34555544444444456555554 444454433
Q ss_pred C--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 038663 302 S--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAI 352 (385)
Q Consensus 302 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 352 (385)
. +..+++.+++.++....+.+.+......-..+....|++.++|.+-.+..
T Consensus 164 ~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 164 ISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred HHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3 78899999999999999998874432222346667899999998764433
No 52
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.74 E-value=1.3e-07 Score=99.43 Aligned_cols=200 Identities=16% Similarity=0.137 Sum_probs=116.9
Q ss_pred CCcchHHHHHHHHHHhc---cCCceEEEEEcCCCCchHHHHHHHHHHhhhh-CC-----CCCceEEEEEcCCHHHHHHHH
Q 038663 158 PLESSSKALNSIMKLLK---DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTI-AP-----YDKAHVIVAESSDLRRIQDKI 228 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~-----F~~~~~~wv~vs~~~~l~~~i 228 (385)
+++||+.+++.|...+. .....++.+.|.+|+|||+|++.|......+ .. |++ ...-++.++....++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q-~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQ-FERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhccc-ccCCCchHHHHHHHHHH
Confidence 37899999999998885 4566799999999999999999999887643 11 110 00001111333344444
Q ss_pred HHHhcCcc---------------------------------c---------cccHHH-----HHHHHHHHHHhcCCcEEE
Q 038663 229 AELLKFKI---------------------------------E---------EENELQ-----RRATLAKRLRERTKKVLI 261 (385)
Q Consensus 229 ~~~l~~~~---------------------------------~---------~~~~~~-----~~~~l~~~l~~~~kr~Ll 261 (385)
+.++.... + ...... ....+...... .++.++
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~-~~plVi 158 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAE-EHPLVI 158 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhc-cCCeEE
Confidence 44431100 0 000000 11122223333 379999
Q ss_pred EEeCCCcch--hhh---hhcCCCC--C-CCCCeEEEEeeCChh--hhhhcC-CceEEcCCCCHHHHHHHHHHhhCCCCCc
Q 038663 262 ILDDVREKI--NLA---VSGIPYG--E-EGNRCKVIVTSRRLD--VCSKMS-DVTVQIEELGEEDRLKLFKQIARLPDSE 330 (385)
Q Consensus 262 VlDdv~~~~--~~~---~l~~~~~--~-~~~gs~iivTtr~~~--v~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 330 (385)
|+||++-.+ .++ .+..... . ..+..-.+.|.+... .-.... ...+.|.||+..+...+....++.. ..
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~-~~ 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT-KL 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc-cc
Confidence 999996332 121 1111111 0 001111222222221 111111 5789999999999999999999874 11
Q ss_pred chHHHHHHHHHHhCCChHHHHHHHHHhcCC
Q 038663 331 AFEGAAKVIVKACGSLPSAIAIVAGALRGK 360 (385)
Q Consensus 331 ~~~~~~~~I~~~c~GlPlai~~~~~~L~~~ 360 (385)
...+..+.|+++..|+|+.+..+-..|...
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 223566779999999999999999888875
No 53
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.74 E-value=2e-07 Score=76.59 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=70.3
Q ss_pred chHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCH-HHHHHHHHHHhcCccccc
Q 038663 161 SSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDL-RRIQDKIAELLKFKIEEE 239 (385)
Q Consensus 161 gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~-~~l~~~i~~~l~~~~~~~ 239 (385)
|++..+..+...+.....+.+.|+|++|+|||++++.+++..... . . ..+++..+.. ............
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~-~--~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP-G-A--PFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC-C-C--CeEEEehhhhhhhhHHHHHhhhh------
Confidence 678888899888877667899999999999999999999987521 1 1 4455554411 111100000000
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEEeCCCcc-----hhhhhhcCCCCCC---CCCeEEEEeeCChh
Q 038663 240 NELQRRATLAKRLRERTKKVLIILDDVREK-----INLAVSGIPYGEE---GNRCKVIVTSRRLD 296 (385)
Q Consensus 240 ~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gs~iivTtr~~~ 296 (385)
............ +..+|++||++.. ..+..+...+... ..+..+|+||....
T Consensus 72 ---~~~~~~~~~~~~--~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---LVRLLFELAEKA--KPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---hHhHHHHhhccC--CCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 000111111223 7889999999853 2222222222111 35778888887664
No 54
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=8e-07 Score=84.70 Aligned_cols=191 Identities=13% Similarity=0.086 Sum_probs=111.5
Q ss_pred CCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCc------eEEEEEcCCHHHHHHHH
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKA------HVIVAESSDLRRIQDKI 228 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~------~~~wv~vs~~~~l~~~i 228 (385)
...++|.+.....|.+.+..+... .+.++|+.|+||+|+|..+.+.+--....... ...-+| ......+.|
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~--~~c~~c~~i 95 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID--PDHPVARRI 95 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC--CCChHHHHH
Confidence 456889999999999998877765 48899999999999999999876322111100 000000 000111111
Q ss_pred HHHhcC-------cc--------ccccHHHHHHHHHHHHHhc---CCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEE
Q 038663 229 AELLKF-------KI--------EEENELQRRATLAKRLRER---TKKVLIILDDVREK--INLAVSGIPYGEEGNRCKV 288 (385)
Q Consensus 229 ~~~l~~-------~~--------~~~~~~~~~~~l~~~l~~~---~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~i 288 (385)
...--. .. .....++ +..+.+++... +++-++||||++.. ...+.+...+.+...++.+
T Consensus 96 ~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 96 AAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 110000 00 0111122 33344443311 26678999999754 3444454444443445666
Q ss_pred EEeeCChh-hhhhc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 289 IVTSRRLD-VCSKM-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 289 ivTtr~~~-v~~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
|++|.+.. +...+ . +..+.+.+++.++..+++.+..+.... .....++..++|.|.....+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~~----~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPD----DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCCH----HHHHHHHHHcCCCHHHHHHH
Confidence 66666553 33332 3 789999999999999999887543211 22256899999999865444
No 55
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.72 E-value=2.1e-07 Score=93.77 Aligned_cols=191 Identities=13% Similarity=0.126 Sum_probs=108.3
Q ss_pred CCCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHH--
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAEL-- 231 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~-- 231 (385)
.+..++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+.+.+....... +... ........+...
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-----~~pC-g~C~sCr~i~~g~~ 87 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-----GEPC-GVCQSCTQIDAGRY 87 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-----CCCC-cccHHHHHHhccCc
Confidence 3456899999999999999877654 679999999999999999998754221110 0000 000000000000
Q ss_pred ---hcCc-cccccHHHHHHHHHHH-----HHhcCCcEEEEEeCCCcch--hhhhhcCCCCCCCCCeEEEEeeC-Chhhhh
Q 038663 232 ---LKFK-IEEENELQRRATLAKR-----LRERTKKVLIILDDVREKI--NLAVSGIPYGEEGNRCKVIVTSR-RLDVCS 299 (385)
Q Consensus 232 ---l~~~-~~~~~~~~~~~~l~~~-----l~~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr-~~~v~~ 299 (385)
+... ......+.+ ..+.+. ..+ ++-++||||++... ....+...+.+....+++|++|. ...+..
T Consensus 88 ~DvlEidaAs~~gVd~I-Relle~a~~~P~~g--k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 88 VDLLEIDAASNTGIDNI-REVLENAQYAPTAG--KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred cceEEEeccccCCHHHH-HHHHHHHHhhhhhC--CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 0000 000111111 111111 123 66789999997543 23444333333334455665554 333322
Q ss_pred h-cC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 300 K-MS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 300 ~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
. .+ +..+.+.+++.++....+.+.+......-..+..+.|++.++|.+.-+..+-
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 2 23 6778999999999999999887433222234667889999999886554443
No 56
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=3e-07 Score=91.32 Aligned_cols=192 Identities=12% Similarity=0.095 Sum_probs=107.8
Q ss_pred CCCCCcchHHHHHHHHHHhccCCceE-EEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhc
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVNI-IGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLK 233 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~ 233 (385)
.+.+++|.+..++.|.+++..+.... +.++|++|+||||+|+.+.+.+.-...+. .. -| +.-.....|...--
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~--~~--pC--g~C~~C~~i~~g~~ 87 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS--AN--PC--NDCENCREIDEGRF 87 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC--cc--cC--CCCHHHHHHhcCCC
Confidence 34568899999999999998776654 68999999999999999998764321111 00 00 00000111100000
Q ss_pred -----Cc-cccccHHHHHHHHHHHHH---hcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEee-CChhhhhhc
Q 038663 234 -----FK-IEEENELQRRATLAKRLR---ERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTS-RRLDVCSKM 301 (385)
Q Consensus 234 -----~~-~~~~~~~~~~~~l~~~l~---~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-r~~~v~~~~ 301 (385)
.. ......+.. ..+.+.+. ..++.-++|||+++.. ...+.+...+.+....+++|++| ....+...+
T Consensus 88 ~d~~eidaas~~~v~~i-R~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI 166 (509)
T PRK14958 88 PDLFEVDAASRTKVEDT-RELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTV 166 (509)
T ss_pred ceEEEEcccccCCHHHH-HHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHH
Confidence 00 000111111 11222211 1115568899999854 44555544444434456665544 444443222
Q ss_pred -C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 302 -S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 302 -~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
. +..+++.+++.++....+.+.+......-..+....|++.++|-+--+..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 167 LSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 2 678999999999988887777633211122355677889999987554443
No 57
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.72 E-value=7.2e-08 Score=83.10 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=34.8
Q ss_pred CCcchHHHHHHHHHHhc---cCCceEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 158 PLESSSKALNSIMKLLK---DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
.|+||+++++.|...+. ....+++.|+|++|+|||+|++.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999993 4467899999999999999999999988765
No 58
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.70 E-value=7.6e-07 Score=77.19 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=92.7
Q ss_pred HHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCC-c----------------eEEEEEcCCHHHHHHHHH
Q 038663 168 SIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDK-A----------------HVIVAESSDLRRIQDKIA 229 (385)
Q Consensus 168 ~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~----------------~~~wv~vs~~~~l~~~i~ 229 (385)
.|.+.+..++. ..+.++|+.|+|||++|+.+.+..-....+.. . ...++....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~--------- 73 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG--------- 73 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---------
Confidence 34555555555 57899999999999999999988643211110 0 001111100
Q ss_pred HHhcCccccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCCh-hhhhhcC-
Q 038663 230 ELLKFKIEEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRL-DVCSKMS- 302 (385)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~- 302 (385)
.....+. ...+.+.+.. .+.+-++|+||++.. ..++.+...+.+....+.+|++|++. .+...+.
T Consensus 74 -------~~~~~~~-i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 74 -------QSIKVDQ-VRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred -------CcCCHHH-HHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh
Confidence 0011111 1111222211 115668999998754 33455544444434456666666543 3322222
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHH
Q 038663 303 -DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSA 349 (385)
Q Consensus 303 -~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPla 349 (385)
...+++.+++.++..+.+.+. |. ..+.+..|++.++|.|..
T Consensus 146 r~~~~~~~~~~~~~~~~~l~~~-gi-----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 146 RCQVLPFPPLSEEALLQWLIRQ-GI-----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred hcEEeeCCCCCHHHHHHHHHHc-CC-----CHHHHHHHHHHcCCCccc
Confidence 679999999999999999887 42 136678899999998853
No 59
>PRK05642 DNA replication initiation factor; Validated
Probab=98.70 E-value=6e-07 Score=80.58 Aligned_cols=152 Identities=16% Similarity=0.245 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCc
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKK 258 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr 258 (385)
..+.|+|++|+|||.|++.+++...... . .+++++..+ +... ...+.+.+.+ -.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~--~--~v~y~~~~~---~~~~-----------------~~~~~~~~~~--~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG--E--PAVYLPLAE---LLDR-----------------GPELLDNLEQ--YE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC--C--cEEEeeHHH---HHhh-----------------hHHHHHhhhh--CC
Confidence 5789999999999999999998765321 2 445555432 1110 0123334444 23
Q ss_pred EEEEEeCCCcc---hhhhh-hcCCCCC-CCCCeEEEEeeCChhh---------hhhcC-CceEEcCCCCHHHHHHHHHHh
Q 038663 259 VLIILDDVREK---INLAV-SGIPYGE-EGNRCKVIVTSRRLDV---------CSKMS-DVTVQIEELGEEDRLKLFKQI 323 (385)
Q Consensus 259 ~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~iivTtr~~~v---------~~~~~-~~~~~l~~L~~~~~~~lf~~~ 323 (385)
+|++||+... ..|.. +...+.. ...|..+|+|++.... .+.+. ..++++++++.++...+++.+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6788999633 24433 2222211 1235678888875432 22233 578999999999999999965
Q ss_pred hCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHh
Q 038663 324 ARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGAL 357 (385)
Q Consensus 324 ~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L 357 (385)
+....-.-.+++..-|++.+.|-.-.+..+-..|
T Consensus 179 a~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRRGLHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5221111224778889999988876665554444
No 60
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.70 E-value=2.5e-07 Score=84.61 Aligned_cols=133 Identities=11% Similarity=0.161 Sum_probs=74.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERT 256 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 256 (385)
....+.++|++|+||||+|+.+++......... ...++.++. ..+.... + ... ...+.+.+...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~--~~~~v~~~~-~~l~~~~---~-----g~~----~~~~~~~~~~a- 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLS--KGHLIEVER-ADLVGEY---I-----GHT----AQKTREVIKKA- 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCccc--CCceEEecH-HHhhhhh---c-----cch----HHHHHHHHHhc-
Confidence 446788999999999999999998764322112 112233331 1111110 0 001 12222333322
Q ss_pred CcEEEEEeCCCcc----------hhhhhhcCCCCCCCCCeEEEEeeCChhhh-------hhcC--CceEEcCCCCHHHHH
Q 038663 257 KKVLIILDDVREK----------INLAVSGIPYGEEGNRCKVIVTSRRLDVC-------SKMS--DVTVQIEELGEEDRL 317 (385)
Q Consensus 257 kr~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~iivTtr~~~v~-------~~~~--~~~~~l~~L~~~~~~ 317 (385)
..-+|+|||++.. +....+...+.+......+|+++...... .... ...+.+++++.++..
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 3458899999752 12333433333333445666666543321 1112 467899999999999
Q ss_pred HHHHHhhC
Q 038663 318 KLFKQIAR 325 (385)
Q Consensus 318 ~lf~~~~~ 325 (385)
+++++.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99998874
No 61
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=4.6e-07 Score=94.45 Aligned_cols=186 Identities=13% Similarity=0.119 Sum_probs=106.9
Q ss_pred CCCCcchHHHHHHHHHHhccCCceE-EEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHH---
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNI-IGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAEL--- 231 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~--- 231 (385)
+..++|.+..++.|..++..+.+.. +.++|+.|+||||+|+.+.+.+.-...... .-+-.|-+ .+.|...
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-~pCg~C~s-----C~~~~~g~~~ 87 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-TPCGECDS-----CVALAPGGPG 87 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-CCCcccHH-----HHHHHcCCCC
Confidence 4468899999999999998776654 789999999999999999988742111100 00000000 0001000
Q ss_pred ----hcCcc-ccccHHHHHHHHHHH-----HHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEee-CChhhh
Q 038663 232 ----LKFKI-EEENELQRRATLAKR-----LRERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTS-RRLDVC 298 (385)
Q Consensus 232 ----l~~~~-~~~~~~~~~~~l~~~-----l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-r~~~v~ 298 (385)
+.... .....+.. ..+.+. ..+ +.-++|||+++.. ..++.|...+.+-...+.+|++| ....+.
T Consensus 88 ~~dv~eidaas~~~Vd~i-R~l~~~~~~~p~~~--~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 88 SLDVTEIDAASHGGVDDA-RELRERAFFAPAES--RYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCcEEEecccccCCHHHH-HHHHHHHHhchhcC--CceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 00000 00011111 112221 223 5557889999854 45555555554444455555544 444454
Q ss_pred hhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHH
Q 038663 299 SKMS--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAI 350 (385)
Q Consensus 299 ~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 350 (385)
..+. +..|++.+++.++...++.+.+.......-.+....|++.++|.+..+
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 4333 789999999999999998887633211122345667889999977433
No 62
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=4.8e-07 Score=91.48 Aligned_cols=194 Identities=13% Similarity=0.131 Sum_probs=107.9
Q ss_pred CCCCcchHHHHHHHHHHhccCCceE-EEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEc---C-CHHHHHHHHHH
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNI-IGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAES---S-DLRRIQDKIAE 230 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~v---s-~~~~l~~~i~~ 230 (385)
+..++|.+..+..|.+.+..+.... +.++|+.|+||||+|+.+.+.+.-...+. ...|..- + ..-...+.+..
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~--~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMID--DPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCC--ccccccccCCCCccCHHHHHHhc
Confidence 4568899999999999888766654 88999999999999999998864321110 0001000 0 00011111110
Q ss_pred HhcCc---c---ccccHHHHHHHHHHHH-----HhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEE-EeeCChh
Q 038663 231 LLKFK---I---EEENELQRRATLAKRL-----RERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVI-VTSRRLD 296 (385)
Q Consensus 231 ~l~~~---~---~~~~~~~~~~~l~~~l-----~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTtr~~~ 296 (385)
.-... . .....+++ ..+.+.+ .+ .+-++|+||++.. ...+.|...+.+....+.+| +|++...
T Consensus 93 g~~~n~~~~d~~s~~~vd~I-r~l~e~~~~~P~~~--~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDI-RQLRENVRYGPQKG--RYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred cCCCCeEEecccccCCHHHH-HHHHHHHHhhhhcC--CCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00000 0 00111111 1222222 22 5567899998754 33455544443333345554 4544444
Q ss_pred hhhh-cC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 038663 297 VCSK-MS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPS-AIAIVA 354 (385)
Q Consensus 297 v~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~ 354 (385)
+... .. +..+++.+++.++....+.+.+......-..+.++.|++.++|..- ++..+-
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4433 33 7899999999999998888766322111223667789999999554 444443
No 63
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.69 E-value=4.9e-07 Score=86.74 Aligned_cols=201 Identities=18% Similarity=0.212 Sum_probs=111.3
Q ss_pred CCCCCcchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCH
Q 038663 155 DYVPLESSSKALNSIMKLLKD-------------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDL 221 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~ 221 (385)
.+..+.|++..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.... .|- .+. .
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--~~~-------~v~-~ 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TFI-------RVV-G 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--CEE-------ecc-h
Confidence 344678999999988887631 13456899999999999999999997652 232 111 1
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------------hhhhhcCCCC--CCC
Q 038663 222 RRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPYG--EEG 283 (385)
Q Consensus 222 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~~ 283 (385)
..+.... ++ ........+.+..+.. .+.+|+|||++... .+..+...+. ...
T Consensus 190 ~~l~~~~---~g------~~~~~i~~~f~~a~~~-~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRKY---IG------EGARLVREIFELAKEK-APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHHh---hh------HHHHHHHHHHHHHHhc-CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111110 00 1111222233333321 67899999987431 1112211111 123
Q ss_pred CCeEEEEeeCChhh-----hhhcC-CceEEcCCCCHHHHHHHHHHhhCCC-CCcchHHHHHHHHHHhCCChH----HHHH
Q 038663 284 NRCKVIVTSRRLDV-----CSKMS-DVTVQIEELGEEDRLKLFKQIARLP-DSEAFEGAAKVIVKACGSLPS----AIAI 352 (385)
Q Consensus 284 ~gs~iivTtr~~~v-----~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~I~~~c~GlPl----ai~~ 352 (385)
.+..||.||..... ..... +..+.+.+.+.++..++|..++... ..+.. ....+++.+.|+.- ++..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCCHHHHHHHHH
Confidence 46778888875432 11112 6689999999999999999887433 11111 13557788888754 2333
Q ss_pred HHHHhcCCCCCCcchhhhhhHHHHHHH
Q 038663 353 VAGALRGKLANESNESLVNIWNDAVEE 379 (385)
Q Consensus 353 ~~~~L~~~~~~~~~~~~~~~W~~~~~~ 379 (385)
.|++.+-... ...++.+....++++
T Consensus 338 ~A~~~a~~~~--~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 338 EAGMFAIREE--RDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHHHHhC--CCccCHHHHHHHHHH
Confidence 3333221110 011256677666654
No 64
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=1.2e-06 Score=84.15 Aligned_cols=170 Identities=12% Similarity=0.069 Sum_probs=102.3
Q ss_pred CCCcchHHHHHHHHHHhccCC----------ceEEEEEcCCCCchHHHHHHHHHHhhhhC-------------------C
Q 038663 157 VPLESSSKALNSIMKLLKDEK----------VNIIGVQGPGGVGKSTLMEQLAKQIDTIA-------------------P 207 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~L~~~~----------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~ 207 (385)
..++|.+.-++.|.+.+..+. .+.+.++||+|+|||++|+.+.+.+--.. |
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 457898888888988887653 45688999999999999999988653211 1
Q ss_pred CCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCC
Q 038663 208 YDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEE 282 (385)
Q Consensus 208 F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~ 282 (385)
.+ ..++... ......++ ...+.+.+.. .+++-+++|||++.. ...+.+...+.+.
T Consensus 85 pD---~~~i~~~----------------~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PD---VRVVAPE----------------GLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CC---EEEeccc----------------cccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 11 1111110 00011111 1222222221 015558888999754 3334444444333
Q ss_pred CCCeEEEEeeCC-hhhhhhc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHH
Q 038663 283 GNRCKVIVTSRR-LDVCSKM-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIA 351 (385)
Q Consensus 283 ~~gs~iivTtr~-~~v~~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 351 (385)
..++.+|++|.+ ..+...+ + +..+.+.+++.++..+.+.+..|.. .+.+..++..++|.|....
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~~-----~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGVD-----PETARRAARASQGHIGRAR 211 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCCC-----HHHHHHHHHHcCCCHHHHH
Confidence 445555555544 4444333 3 7899999999999999887654421 3456778999999997543
No 65
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=5e-07 Score=90.33 Aligned_cols=178 Identities=15% Similarity=0.204 Sum_probs=106.7
Q ss_pred CCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCC-------------------CCCceEEE
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAP-------------------YDKAHVIV 215 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~~~~w 215 (385)
+..++|.+..++.|.+++..+... .+.++|+.|+||||+|+.+.+.+..... |. ..++
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~--d~~e 92 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFV--DLIE 92 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC--ceeE
Confidence 456889999999999998876665 4689999999999999999987642110 11 1111
Q ss_pred EEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEE
Q 038663 216 AESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIV 290 (385)
Q Consensus 216 v~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv 290 (385)
+..+ .....+. ...+.+.+.. .+++-++|||+++.. ...+.+...+.+....+.+|+
T Consensus 93 i~~~-----------------~~~~vd~-ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 93 VDAA-----------------SNTQVDA-MRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred eecc-----------------ccCCHHH-HHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 1111 0011111 1122222211 125668999999854 335555444444334555555
Q ss_pred ee-CChhhhhh-cC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChH-HHHHH
Q 038663 291 TS-RRLDVCSK-MS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPS-AIAIV 353 (385)
Q Consensus 291 Tt-r~~~v~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~ 353 (385)
+| ....+... .. +..+++++++.++....+.+.+.......-.+..+.|++.++|.+- |+..+
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44 44444322 22 6789999999999999888877322112223566778999999775 44444
No 66
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.66 E-value=4.2e-07 Score=95.73 Aligned_cols=182 Identities=15% Similarity=0.187 Sum_probs=104.0
Q ss_pred CCCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCC---CCCceEEE-EEcCCHHHHHHHHH
Q 038663 154 PDYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAP---YDKAHVIV-AESSDLRRIQDKIA 229 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---F~~~~~~w-v~vs~~~~l~~~i~ 229 (385)
....+++||+.++..++..|.......+.++|++|+||||+|+.+.+....... ..+ ..+| +..+.+..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~-~~i~~l~l~~l~a------ 256 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRN-VRLLSLDLGLLQA------ 256 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccC-CeEEEeehhhhhc------
Confidence 445679999999999999988776677789999999999999999998753221 111 2222 22221100
Q ss_pred HHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-------hhh--hhcCCCCCCCCCeEEEEeeCChhh---
Q 038663 230 ELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI-------NLA--VSGIPYGEEGNRCKVIVTSRRLDV--- 297 (385)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-------~~~--~l~~~~~~~~~gs~iivTtr~~~v--- 297 (385)
+.. ...........+.+.+...+++.+|+||+++... ..+ .+..+....+ ..++|-||.....
T Consensus 257 ---g~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~~e~~~~ 331 (852)
T TIGR03345 257 ---GAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTWAEYKKY 331 (852)
T ss_pred ---ccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCHHHHhhh
Confidence 000 0011112223333333322278999999997542 111 1333333333 3455555554322
Q ss_pred ----hhhcC-CceEEcCCCCHHHHHHHHHHhhCC---C-CCcchHHHHHHHHHHhCCCh
Q 038663 298 ----CSKMS-DVTVQIEELGEEDRLKLFKQIARL---P-DSEAFEGAAKVIVKACGSLP 347 (385)
Q Consensus 298 ----~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~---~-~~~~~~~~~~~I~~~c~GlP 347 (385)
..... ...+.+.+++.++...+++..... . .-.-..+....+++.|.+++
T Consensus 332 ~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 332 FEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 11222 678999999999999997554411 1 11122455566677666554
No 67
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=8.4e-07 Score=89.12 Aligned_cols=196 Identities=13% Similarity=0.125 Sum_probs=110.5
Q ss_pred CCCCcchHHHHHHHHHHhccCCceE-EEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcC
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNI-IGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKF 234 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~ 234 (385)
+.+++|.+..++.|.+++..+.... +.++|+.|+||||+|+.+.+.+.-..... . ... +.-.....|...-..
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~--~---~pC-g~C~~C~~i~~~~~~ 85 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT--A---TPC-GVCESCVALAPNGPG 85 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC--C---Ccc-cccHHHHHhhcccCC
Confidence 4568899999999999998877665 68999999999999999998764211110 0 000 000001111100000
Q ss_pred -------cc-ccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEE-EeeCChhhhhh
Q 038663 235 -------KI-EEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVI-VTSRRLDVCSK 300 (385)
Q Consensus 235 -------~~-~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTtr~~~v~~~ 300 (385)
.. .....+. ...+.+.+.. ..++-++|||+++.. ...+.|...+.+....+.+| +||....+...
T Consensus 86 ~~dvieidaas~~gvd~-iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 86 SIDVVELDAASHGGVDD-TRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CceEEEeccccccCHHH-HHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 00 0001111 1112221111 115668899998743 45555544454444455555 45555554433
Q ss_pred c-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChH-HHHHHHHHhc
Q 038663 301 M-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPS-AIAIVAGALR 358 (385)
Q Consensus 301 ~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~~~L~ 358 (385)
+ . +..+++.+++.++..+.+.+.+......--.+....|++.++|-+- ++..+-.++.
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 3 3 7899999999999998888876332111223566778889999764 5555444433
No 68
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.65 E-value=8.2e-07 Score=79.40 Aligned_cols=163 Identities=11% Similarity=0.111 Sum_probs=94.7
Q ss_pred HHHHHHHHhcc-CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHH
Q 038663 165 ALNSIMKLLKD-EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQ 243 (385)
Q Consensus 165 ~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~ 243 (385)
.+..+.++... .....+.|+|++|+|||+||+.+++..... .+ ...+++........
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~---~~~~i~~~~~~~~~------------------ 85 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-GR---NARYLDAASPLLAF------------------ 85 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CC---cEEEEehHHhHHHH------------------
Confidence 33444444432 345688999999999999999999976432 12 22333332211100
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCcchhh--hhhcCCCCC-CCCCe-EEEEeeCChhhh--------hhcC-CceEEcCC
Q 038663 244 RRATLAKRLRERTKKVLIILDDVREKINL--AVSGIPYGE-EGNRC-KVIVTSRRLDVC--------SKMS-DVTVQIEE 310 (385)
Q Consensus 244 ~~~~l~~~l~~~~kr~LlVlDdv~~~~~~--~~l~~~~~~-~~~gs-~iivTtr~~~v~--------~~~~-~~~~~l~~ 310 (385)
... . +.-+|++||+.....+ ..+...+.. ...+. .+|+|++..... +.+. ...+.+.|
T Consensus 86 ------~~~-~--~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~p 156 (227)
T PRK08903 86 ------DFD-P--EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156 (227)
T ss_pred ------hhc-c--cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecC
Confidence 011 1 3457889999754221 222222211 11233 466666643321 1223 47899999
Q ss_pred CCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhc
Q 038663 311 LGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALR 358 (385)
Q Consensus 311 L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~ 358 (385)
+++++-..++.+.+......--++..+.+++.+.|.+..+..+...|.
T Consensus 157 l~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 157 LSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 999887777776542221222346778888999999999887776654
No 69
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.64 E-value=3.3e-07 Score=82.49 Aligned_cols=182 Identities=15% Similarity=0.161 Sum_probs=112.2
Q ss_pred CCCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEE-EEcCCHH--HHHHHHHH
Q 038663 154 PDYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIV-AESSDLR--RIQDKIAE 230 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~w-v~vs~~~--~l~~~i~~ 230 (385)
..+..+.|.+..+.-|.+.+......+...+||+|+|||+-|+.+...+-..+-|. +++- .++|+.+ .+.++=..
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~--~rvl~lnaSderGisvvr~Kik 110 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFP--CRVLELNASDERGISVVREKIK 110 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccc--cchhhhcccccccccchhhhhc
Confidence 34556889999999999988887789999999999999999999998876555676 3332 2333111 00000000
Q ss_pred HhcCccccccHHHHHHHHHHHHHhcCCc-EEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeC-ChhhhhhcC--Cc
Q 038663 231 LLKFKIEEENELQRRATLAKRLRERTKK-VLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSR-RLDVCSKMS--DV 304 (385)
Q Consensus 231 ~l~~~~~~~~~~~~~~~l~~~l~~~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr-~~~v~~~~~--~~ 304 (385)
+-..+...........-++ -++|||+++.. +.|..+...+.+....++.|+.+. ...+...+. ..
T Consensus 111 ---------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 111 ---------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred ---------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 0000000000000000133 46889999854 678888777766556666554443 333322222 56
Q ss_pred eEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCC
Q 038663 305 TVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL 346 (385)
Q Consensus 305 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~Gl 346 (385)
-+..++|.+++...-++..+......--.+..+.|++.++|-
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 789999999999999988884432222336667788888884
No 70
>PF14516 AAA_35: AAA-like domain
Probab=98.64 E-value=8e-06 Score=77.20 Aligned_cols=195 Identities=12% Similarity=0.201 Sum_probs=117.3
Q ss_pred CcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--------CHHHHHHHHHH
Q 038663 159 LESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--------DLRRIQDKIAE 230 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--------~~~~l~~~i~~ 230 (385)
++.|...-+.+.+.+... ...+.|.||..+|||+|+..+.+..... .+ ..+++... +...+++.++.
T Consensus 13 Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~---~~v~id~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY---RCVYIDLQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred ccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC---EEEEEEeecCCCcccCCHHHHHHHHHH
Confidence 457775555666666543 4688999999999999999999988754 23 45566555 45555655555
Q ss_pred HhcCccccc------------cHHHHHHHHHHHH-HhcCCcEEEEEeCCCcch-------h-hhhhcCCCCC----CCCC
Q 038663 231 LLKFKIEEE------------NELQRRATLAKRL-RERTKKVLIILDDVREKI-------N-LAVSGIPYGE----EGNR 285 (385)
Q Consensus 231 ~l~~~~~~~------------~~~~~~~~l~~~l-~~~~kr~LlVlDdv~~~~-------~-~~~l~~~~~~----~~~g 285 (385)
.+....... +.......+.+++ ....++++|+||++...- + +..+..-+.. ....
T Consensus 88 ~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 88 EISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred HHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccc
Confidence 544322110 1122333444443 333489999999987431 1 1111111100 0011
Q ss_pred -eE-EEEeeCChhh-----hhhcC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHh
Q 038663 286 -CK-VIVTSRRLDV-----CSKMS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGAL 357 (385)
Q Consensus 286 -s~-iivTtr~~~v-----~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L 357 (385)
-+ |++.+..... .+..+ ...+.|++++.+|...|+.+.- ....+ ...++|...+||.|.-+..++..+
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~-~~~~~---~~~~~l~~~tgGhP~Lv~~~~~~l 243 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG-LEFSQ---EQLEQLMDWTGGHPYLVQKACYLL 243 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh-ccCCH---HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 12 2222211111 11123 5689999999999999988763 22111 237889999999999999999999
Q ss_pred cCCCC
Q 038663 358 RGKLA 362 (385)
Q Consensus 358 ~~~~~ 362 (385)
..+..
T Consensus 244 ~~~~~ 248 (331)
T PF14516_consen 244 VEEQI 248 (331)
T ss_pred HHccC
Confidence 88653
No 71
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=9.2e-07 Score=89.27 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=112.3
Q ss_pred CCCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCC-ceEEEEEcCCHHHHHHHHHHHh
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDK-AHVIVAESSDLRRIQDKIAELL 232 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~~~wv~vs~~~~l~~~i~~~l 232 (385)
.+..++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+.+.+.-...... +..+-.| ....-.+.|...-
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c--g~c~~C~~i~~g~ 99 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC--GVGEHCQAIMEGR 99 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC--cccHHHHHHhcCC
Confidence 4556899999999999999876654 6899999999999999999987642211110 0000000 0001111111110
Q ss_pred cCc------cccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEee-CChhhhhh
Q 038663 233 KFK------IEEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTS-RRLDVCSK 300 (385)
Q Consensus 233 ~~~------~~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-r~~~v~~~ 300 (385)
... ......+. +..+.+.++. ..++-++|||+++.. ...+.+...+.+...++.+|++| ....+...
T Consensus 100 h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 100 HVDVLEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CCceEEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHH
Confidence 000 00011111 1122222221 014567899998754 33555544443434456665544 44444333
Q ss_pred cC--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 301 MS--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 301 ~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
+. +..+++.+++.++....+.+.+......--.+....|++.++|.+.-+....
T Consensus 179 I~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 179 VLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33 7889999999999999999877433112223667789999999987665544
No 72
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=1.3e-06 Score=83.90 Aligned_cols=182 Identities=14% Similarity=0.200 Sum_probs=104.2
Q ss_pred CCCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhh------CCCCCceEEEEEcCC--HHHHHH
Q 038663 156 YVPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTI------APYDKAHVIVAESSD--LRRIQD 226 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~------~~F~~~~~~wv~vs~--~~~l~~ 226 (385)
+.+++|.+...+.+.+.+..+.. +.+.++|++|+||||+|+.+.+..... ..|. ...+-+...+ ..+-..
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~i~ 94 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS-FNIFELDAASNNSVDDIR 94 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC-cceEEeccccCCCHHHHH
Confidence 45678999999999999887654 488899999999999999998876431 1122 0111111000 001111
Q ss_pred HHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEee-CChhhhhh-cC
Q 038663 227 KIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTS-RRLDVCSK-MS 302 (385)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-r~~~v~~~-~~ 302 (385)
.+++.+... -..+ ++-++++||+... ..+..+...+.+....+.+|+++ ....+... ..
T Consensus 95 ~l~~~~~~~---------------p~~~--~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 95 NLIDQVRIP---------------PQTG--KYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHHhhc---------------cccC--CcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 111111100 0112 5568999998643 23444433332223345555554 33333222 22
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChH-HHHHHHH
Q 038663 303 -DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPS-AIAIVAG 355 (385)
Q Consensus 303 -~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~~ 355 (385)
...+++.+++.++....+.+.+....-.-..+..+.|++.++|-+- ++..+-.
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6789999999999999888866322111223677778889998655 4444433
No 73
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=9.4e-07 Score=88.68 Aligned_cols=195 Identities=10% Similarity=0.121 Sum_probs=111.3
Q ss_pred CCCCcchHHHHHHHHHHhccCC-ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcC
Q 038663 156 YVPLESSSKALNSIMKLLKDEK-VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKF 234 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~ 234 (385)
+.+++|.+..+..|.+.+..+. ...+.++|+.|+||||+|+.+.+.+.-..... ... | +.-...+.|......
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~--~~p--C--g~C~sC~~i~~g~hp 88 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT--GEP--C--NTCEQCRKVTQGMHV 88 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCC--CCC--C--cccHHHHHHhcCCCC
Confidence 4457898888888888887765 46788999999999999999998864211110 000 0 000011111110000
Q ss_pred cc------ccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEee-CChhhhhhc-
Q 038663 235 KI------EEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTS-RRLDVCSKM- 301 (385)
Q Consensus 235 ~~------~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-r~~~v~~~~- 301 (385)
.. .....+ ....+.+.+.. .+++-+||||+++.. ..++.|...+.+....+.+|++| ....+...+
T Consensus 89 Dv~eId~a~~~~Id-~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~ 167 (624)
T PRK14959 89 DVVEIDGASNRGID-DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV 167 (624)
T ss_pred ceEEEecccccCHH-HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH
Confidence 00 000111 11222222221 126678999999754 34455544443333345555544 434444332
Q ss_pred C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCC-hHHHHHHHHHh
Q 038663 302 S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL-PSAIAIVAGAL 357 (385)
Q Consensus 302 ~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~~~~~L 357 (385)
. +..+++.+++.++....+.+.+......-..+.++.|++.++|. -.|+..+..++
T Consensus 168 SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 168 SRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3 67899999999999999988663321112346777899999995 46777776555
No 74
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.6e-06 Score=88.16 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=106.0
Q ss_pred CCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhh---------------------CCCCCceE
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTI---------------------APYDKAHV 213 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~F~~~~~ 213 (385)
+..++|.+..++.|..++..+... .+.++|+.|+||||+|+.+...+... .+|+ ..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n--~~ 93 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN--IH 93 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc--eE
Confidence 456889999999999999877665 47899999999999999998876311 1222 11
Q ss_pred EEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEE
Q 038663 214 IVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKV 288 (385)
Q Consensus 214 ~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~i 288 (385)
.+..+ .....+... .+.+.+.. .+++=++|||+++.. ..++.+...+.+...++.+
T Consensus 94 -~ld~~-----------------~~~~vd~Ir-~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 94 -ELDAA-----------------SNNSVDDIR-NLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred -Eeccc-----------------ccCCHHHHH-HHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 11111 000011111 11111111 014558899998754 3455554444443345555
Q ss_pred EE-eeCChhhhhhc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHH
Q 038663 289 IV-TSRRLDVCSKM-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIA 351 (385)
Q Consensus 289 iv-Ttr~~~v~~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 351 (385)
|+ |+....+...+ . +..+++.+++.++....+.+.+....-.--.+.+..|++.++|-.--+.
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 54 54545444333 3 7889999999999999998876332112223567779999999665443
No 75
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.59 E-value=1.7e-07 Score=84.34 Aligned_cols=89 Identities=22% Similarity=0.237 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-----CHHHHHHHH-----HHHhcCccccc-cH-HHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-----DLRRIQDKI-----AELLKFKIEEE-NE-LQR 244 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-----~~~~l~~~i-----~~~l~~~~~~~-~~-~~~ 244 (385)
....+.|+|++|+|||||++.+++..... +|+ ..+|+++. +..++++.+ +..++.+.... .. ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fd--v~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPE--VYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCC--eEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 44688999999999999999999998765 899 89999865 677777777 22222211000 00 111
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCcc
Q 038663 245 RATLAKRLRERTKKVLIILDDVREK 269 (385)
Q Consensus 245 ~~~l~~~l~~~~kr~LlVlDdv~~~ 269 (385)
.... +++...+++.++++|++...
T Consensus 92 ~~~a-~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKA-KRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHH-HHHHHCCCCEEEEEECHHHh
Confidence 2222 22223349999999999744
No 76
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=2.7e-06 Score=84.10 Aligned_cols=181 Identities=16% Similarity=0.135 Sum_probs=105.6
Q ss_pred CCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhh--CC-CCCc--------------eEEEEE
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTI--AP-YDKA--------------HVIVAE 217 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~--~~-F~~~--------------~~~wv~ 217 (385)
+..++|.+..+..|.+++..+... .+.++|+.|+||||+|+.+....... .. ..+. ..+.+.
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 456789999999999999876654 46789999999999999999875411 00 1100 011111
Q ss_pred cCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEE-e
Q 038663 218 SSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIV-T 291 (385)
Q Consensus 218 vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-T 291 (385)
.+ .....+ ....+.+.+.. .+++-++|+|+++.. ...+.+...+......+.+|+ |
T Consensus 95 aa-----------------s~~gvd-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~t 156 (486)
T PRK14953 95 AA-----------------SNRGID-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCT 156 (486)
T ss_pred Cc-----------------cCCCHH-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 10 001111 11222222221 125669999998744 334444333433333444444 4
Q ss_pred eCChhhhhh-cC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 292 SRRLDVCSK-MS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 292 tr~~~v~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
++...+... .. +..+.+.+++.++....+.+.+.......-.+.+..|+..++|.+..+....
T Consensus 157 t~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 157 TEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444444332 22 6789999999999999888876322112223566778889999776544444
No 77
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=2.2e-06 Score=84.17 Aligned_cols=193 Identities=15% Similarity=0.158 Sum_probs=105.6
Q ss_pred CCCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHH---
Q 038663 156 YVPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAEL--- 231 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~--- 231 (385)
+..++|.+..+..|.+++..+.. ..+.++|+.|+||||+|+.+.+..-....-.+....-.|.+ ...+...
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~-----C~~i~~~~~~ 90 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS-----CKEISSGTSL 90 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH-----HHHHhcCCCC
Confidence 45688999999999999987665 56889999999999999999987642110000000000000 0000000
Q ss_pred --hcCc-cccccHHHHHHHHHHHHH---hcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEee-CChhhhhhc-
Q 038663 232 --LKFK-IEEENELQRRATLAKRLR---ERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTS-RRLDVCSKM- 301 (385)
Q Consensus 232 --l~~~-~~~~~~~~~~~~l~~~l~---~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-r~~~v~~~~- 301 (385)
+... ......+. ...+.+.+. ....+-++|+|++... ...+.+...+.+...++.+|++| +...+...+
T Consensus 91 d~~~i~g~~~~gid~-ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~ 169 (451)
T PRK06305 91 DVLEIDGASHRGIED-IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTIL 169 (451)
T ss_pred ceEEeeccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHH
Confidence 0000 00000111 111122221 0016778899998644 33444434443333455566555 333333322
Q ss_pred C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 038663 302 S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPS-AIAIVA 354 (385)
Q Consensus 302 ~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~ 354 (385)
. +..+++.+++.++....+.+.+......-..+.++.|++.++|.+- |+..+-
T Consensus 170 sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 170 SRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred HhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 6789999999999999888876322111223667789999999664 444443
No 78
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.57 E-value=7.8e-07 Score=92.82 Aligned_cols=159 Identities=17% Similarity=0.210 Sum_probs=93.0
Q ss_pred CCCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhC---CCCCceEEEEEcCCHHHHHHHHHH
Q 038663 154 PDYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIA---PYDKAHVIVAESSDLRRIQDKIAE 230 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~~~wv~vs~~~~l~~~i~~ 230 (385)
....+++||++++..++..|.......+.++|++|+|||++|+.+.+...... .+.+ ..+|. + +...+...
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~-~~~~~-~-~~~~l~a~--- 252 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN-AKIYS-L-DMGSLLAG--- 252 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC-CeEEE-e-cHHHHhhh---
Confidence 34567999999999999999876667788999999999999999999874321 1111 23331 1 11111110
Q ss_pred HhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------hhhhhcCCCCCCCCCeEEEEeeCChhh---
Q 038663 231 LLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------NLAVSGIPYGEEGNRCKVIVTSRRLDV--- 297 (385)
Q Consensus 231 ~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~iivTtr~~~v--- 297 (385)
.. ...+.+.....+.+.+... ++.+|+||+++... +...+..+....+ ..++|-+|.....
T Consensus 253 ---~~-~~g~~e~~l~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 253 ---TK-YRGDFEERLKAVVSEIEKE-PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYEEYKNH 326 (731)
T ss_pred ---cc-ccchHHHHHHHHHHHHhcc-CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHHHHHHH
Confidence 00 0011222333444444332 68899999997431 1122222322222 2344444443221
Q ss_pred ----hhhcC-CceEEcCCCCHHHHHHHHHHhh
Q 038663 298 ----CSKMS-DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 298 ----~~~~~-~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
..... ...+.+.+++.++...+++...
T Consensus 327 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 327 FEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11122 5689999999999999999655
No 79
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.57 E-value=1.1e-06 Score=78.10 Aligned_cols=160 Identities=20% Similarity=0.271 Sum_probs=91.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCC
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTK 257 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 257 (385)
...+.|+|+.|+|||.|++.+++.......=. .+++++. .++...+...+.. .....+.+.++ .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~--~v~y~~~---~~f~~~~~~~~~~--------~~~~~~~~~~~---~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGK--RVVYLSA---EEFIREFADALRD--------GEIEEFKDRLR---S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS---EEEEEH---HHHHHHHHHHHHT--------TSHHHHHHHHC---T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccc--cceeecH---HHHHHHHHHHHHc--------ccchhhhhhhh---c
Confidence 45689999999999999999999876542211 4444443 3344444444321 11123444444 3
Q ss_pred cEEEEEeCCCcch---hhhh-hcCCCCC-CCCCeEEEEeeCChh---------hhhhcC-CceEEcCCCCHHHHHHHHHH
Q 038663 258 KVLIILDDVREKI---NLAV-SGIPYGE-EGNRCKVIVTSRRLD---------VCSKMS-DVTVQIEELGEEDRLKLFKQ 322 (385)
Q Consensus 258 r~LlVlDdv~~~~---~~~~-l~~~~~~-~~~gs~iivTtr~~~---------v~~~~~-~~~~~l~~L~~~~~~~lf~~ 322 (385)
-=+|+|||++... .|.. +...+.. ...|.++|+|+.... ..+.+. +-.+++++++.++...++++
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 5588999997542 2322 1111111 123568999996543 223333 67899999999999999999
Q ss_pred hhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 323 IARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
.+....-.-.+++.+-|++.+.+..-.+..+
T Consensus 178 ~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 178 KAKERGIELPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHTT--S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHhhcCCHHHHHHH
Confidence 8843322233477777888776655444433
No 80
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=6.2e-06 Score=78.37 Aligned_cols=197 Identities=14% Similarity=0.185 Sum_probs=124.0
Q ss_pred CCCCcchHHHHHHHHHHhc----cCCceEEEEEcCCCCchHHHHHHHHHHhhhhC-CCCCceEEEEEcC--CHHHHHHHH
Q 038663 156 YVPLESSSKALNSIMKLLK----DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIA-PYDKAHVIVAESS--DLRRIQDKI 228 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~~~wv~vs--~~~~l~~~i 228 (385)
...+.||+.+++.+.+++. ....+.+-|.|-+|.|||.+...++.+..... .|. .+...|.+ ....++..|
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~--~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPV--TVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccce--eEEEeeccccchHHHHHHH
Confidence 3458899999999999886 34677899999999999999999998865432 233 45555665 777788888
Q ss_pred HHHhcCcc-ccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh--hhhhcCCCC-CCCCCeEEEEeeCChh--------
Q 038663 229 AELLKFKI-EEENELQRRATLAKRLRERTKKVLIILDDVREKIN--LAVSGIPYG-EEGNRCKVIVTSRRLD-------- 296 (385)
Q Consensus 229 ~~~l~~~~-~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~--~~~l~~~~~-~~~~gs~iivTtr~~~-------- 296 (385)
...+.... ...........+.++.++....+|+|+|+++.... -..+...|. +.-.++++|+..--..
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 77773211 11222445667777777754579999999875421 111111111 1223555544332221
Q ss_pred -hhhh-cC--CceEEcCCCCHHHHHHHHHHhhCCC-----CCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 297 -VCSK-MS--DVTVQIEELGEEDRLKLFKQIARLP-----DSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 297 -v~~~-~~--~~~~~l~~L~~~~~~~lf~~~~~~~-----~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
-... ++ ...+.++|.+.++..++|+.++... .+..++-.+++.+...|.+-.|+...-
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 1111 22 6789999999999999999998544 222344444555555555555555544
No 81
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=2.4e-06 Score=87.06 Aligned_cols=187 Identities=13% Similarity=0.177 Sum_probs=106.3
Q ss_pred CCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcC
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKF 234 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~ 234 (385)
+..++|.+..+..|...+..++.. .+.++||.|+||||+|+.+.+.+-....... + ....-... ..+.
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~-~-------~pC~~C~~---~~~~ 85 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL-L-------EPCQECIE---NVNN 85 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC-C-------CchhHHHH---hhcC
Confidence 445789999899999999876554 5689999999999999999987532110000 0 00000000 0000
Q ss_pred cc--------ccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeE-EEEeeCChhhhhh
Q 038663 235 KI--------EEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCK-VIVTSRRLDVCSK 300 (385)
Q Consensus 235 ~~--------~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~-iivTtr~~~v~~~ 300 (385)
.. .....+ ..+.+.+.+.. .+++-++|+|+++.. ..+..+...+......+. |++|+....+...
T Consensus 86 ~~Dvieidaasn~~vd-~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 86 SLDIIEMDAASNNGVD-EIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCcEEEEeccccCCHH-HHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00 001111 12223333321 125668999998743 445555444433333444 4555555555433
Q ss_pred -cC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 038663 301 -MS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPS-AIAIVA 354 (385)
Q Consensus 301 -~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~ 354 (385)
.. +..+.+.+++.++....+...+.......-.+.++.|++.++|-+- |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33 7899999999999999888765222111123556778999988664 444333
No 82
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=3.1e-06 Score=85.98 Aligned_cols=193 Identities=16% Similarity=0.153 Sum_probs=110.9
Q ss_pred CCCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcC
Q 038663 156 YVPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKF 234 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~ 234 (385)
+..++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+.+.+.....+.. +... +.....+.|......
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~----~~~c-~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK----GRPC-GTCEMCRAIAEGSAV 89 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC----CCCC-ccCHHHHHHhcCCCC
Confidence 44688999999999888876655 45689999999999999999988642211110 0000 111222223221111
Q ss_pred cc------ccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeC-Chhhhhhc-
Q 038663 235 KI------EEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSR-RLDVCSKM- 301 (385)
Q Consensus 235 ~~------~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr-~~~v~~~~- 301 (385)
.. .....+. ...+.+.+.. ..++-++|||+++.. ...+.|...+.+....+.+|+++. ...+...+
T Consensus 90 d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 90 DVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred eEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 00 0111111 1222222221 025678999998744 345555444433334556655553 33333322
Q ss_pred C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 302 S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 302 ~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
. +..+.+.+++.++....+...+......-..+.+..|++.|+|.+..+...-
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 6789999999999999888877433111223677789999999886554443
No 83
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=4.2e-06 Score=84.35 Aligned_cols=190 Identities=15% Similarity=0.168 Sum_probs=106.8
Q ss_pred CCCCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhc
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLK 233 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~ 233 (385)
.+..++|.+...+.|.+++..++. +.+.++|+.|+||||+|+.+.+..-....-. .. .. +.......+.....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~--~~---pC-~~C~~C~~i~~g~~ 87 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD--GE---PC-NECEICKAITNGSL 87 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--CC---CC-CccHHHHHHhcCCC
Confidence 345688999999999999986654 4577899999999999999998754211000 00 00 00011111111100
Q ss_pred Ccc------ccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEE-EeeCChhhhhhc
Q 038663 234 FKI------EEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVI-VTSRRLDVCSKM 301 (385)
Q Consensus 234 ~~~------~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTtr~~~v~~~~ 301 (385)
.+. .....+ ....+.+.+.. .++.-++|||+++.. ..+..|...+.+....+.+| .||....+...+
T Consensus 88 ~dv~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 88 MDVIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCeEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 000 001111 11222222221 125668899999744 44555544443333344444 455554443332
Q ss_pred -C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHH
Q 038663 302 -S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIA 351 (385)
Q Consensus 302 -~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 351 (385)
. +..+.+.+++.++....+...+......--.+.+..|++.++|-+..+.
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 3 7789999999999999988876322111123566778888888775443
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=98.51 E-value=6.2e-06 Score=76.19 Aligned_cols=131 Identities=11% Similarity=0.097 Sum_probs=75.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCC
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTK 257 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 257 (385)
...+.++|++|+||||+|+.+++.......-. ..-|+.++ ...+..... + ... ....+.+... .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~--~~~~~~v~-~~~l~~~~~---g-----~~~----~~~~~~l~~a-~ 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIK--KGHLLTVT-RDDLVGQYI---G-----HTA----PKTKEVLKKA-M 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCC--CCceEEec-HHHHHHHHh---c-----cch----HHHHHHHHHc-c
Confidence 34688999999999999999998764322222 12244444 112221111 1 011 1112223221 3
Q ss_pred cEEEEEeCCCcc-----------hhhhhhcCCCCCCCCCeEEEEeeCChhhhh-------hcC--CceEEcCCCCHHHHH
Q 038663 258 KVLIILDDVREK-----------INLAVSGIPYGEEGNRCKVIVTSRRLDVCS-------KMS--DVTVQIEELGEEDRL 317 (385)
Q Consensus 258 r~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtr~~~v~~-------~~~--~~~~~l~~L~~~~~~ 317 (385)
.-+|+||++... +....+...+.+...+.+||+++....... ..+ ...+.+++++.++..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 459999999642 122233333334445677888876544321 112 668999999999999
Q ss_pred HHHHHhh
Q 038663 318 KLFKQIA 324 (385)
Q Consensus 318 ~lf~~~~ 324 (385)
+++...+
T Consensus 203 ~I~~~~l 209 (287)
T CHL00181 203 QIAKIML 209 (287)
T ss_pred HHHHHHH
Confidence 9999887
No 85
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.50 E-value=2.1e-06 Score=83.63 Aligned_cols=181 Identities=19% Similarity=0.257 Sum_probs=103.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCC
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTK 257 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 257 (385)
...+.|+|++|+|||+|++.+++..... ..+..+++++.. ++...+...+... . ...+.+.++.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~--~~~~~v~yi~~~---~~~~~~~~~~~~~----~----~~~~~~~~~~--- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILEN--NPNAKVVYVSSE---KFTNDFVNALRNN----K----MEEFKEKYRS--- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh--CCCCcEEEEEHH---HHHHHHHHHHHcC----C----HHHHHHHHHh---
Confidence 3568999999999999999999987643 211144455433 3344444444311 1 2233444443
Q ss_pred cEEEEEeCCCcch---hh-hhhcCCCCC-CCCCeEEEEeeCChh---------hhhhcC-CceEEcCCCCHHHHHHHHHH
Q 038663 258 KVLIILDDVREKI---NL-AVSGIPYGE-EGNRCKVIVTSRRLD---------VCSKMS-DVTVQIEELGEEDRLKLFKQ 322 (385)
Q Consensus 258 r~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTtr~~~---------v~~~~~-~~~~~l~~L~~~~~~~lf~~ 322 (385)
.-+|+|||++... .+ ..+...+.. ...+..+|+|+.... +.+.+. ...+.+++.+.++-..++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 3488899997431 11 112111111 113456788776432 122233 46799999999999999999
Q ss_pred hhCCCCCcchHHHHHHHHHHhCCChHHHH----HHHHH--hcCCCCCCcchhhhhhHHHHHHHH
Q 038663 323 IARLPDSEAFEGAAKVIVKACGSLPSAIA----IVAGA--LRGKLANESNESLVNIWNDAVEEV 380 (385)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlPlai~----~~~~~--L~~~~~~~~~~~~~~~W~~~~~~l 380 (385)
.+......-.+++...|++.+.|.+-.+. .+..+ +..+. ++.+..+.++..+
T Consensus 280 ~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~------it~~~~~~~L~~~ 337 (405)
T TIGR00362 280 KAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKP------ITLELAKEALKDL 337 (405)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHh
Confidence 88443222234677778888887665433 22211 12222 2566777777654
No 86
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=2.4e-06 Score=86.42 Aligned_cols=195 Identities=13% Similarity=0.132 Sum_probs=108.6
Q ss_pred CCCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhc
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLK 233 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~ 233 (385)
.+..++|.+.....|.+.+..++.. .+.++|+.|+||||+|+.+.+.+........ ... +.......|...-.
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-~~c-----~~c~~c~~i~~g~~ 87 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-EPC-----NVCPPCVEITEGRS 87 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-CCC-----CccHHHHHHhcCCC
Confidence 3456889999999999998877654 5689999999999999999987542111100 000 00000111100000
Q ss_pred Cc---c--c-cccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEE-EeeCChhhhhhc
Q 038663 234 FK---I--E-EENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVI-VTSRRLDVCSKM 301 (385)
Q Consensus 234 ~~---~--~-~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTtr~~~v~~~~ 301 (385)
.. . . ....+ ....+.+.+.. ..++-++|||+++.. ...+.|...+.+....+.+| +||....+...+
T Consensus 88 ~d~~eid~~s~~~v~-~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVD-DIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHH-HHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 00 0 0 00111 11222222221 114557889999754 34455544443333455554 555555554433
Q ss_pred C--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCCh-HHHHHHHHH
Q 038663 302 S--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-SAIAIVAGA 356 (385)
Q Consensus 302 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~~~~ 356 (385)
. +..+++.+++.++....+...+......--.+....|++.++|.. .|+..+-.+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 778999999999998888876633211122356677888998865 555555443
No 87
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.49 E-value=2.3e-06 Score=83.95 Aligned_cols=164 Identities=15% Similarity=0.177 Sum_probs=100.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCC
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTK 257 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 257 (385)
..-+.|+|+.|+|||+|++.+.+.......-. .+++++. .+++..+...+... ......+.+.++ .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~--~v~yv~~---~~f~~~~~~~l~~~------~~~~~~~~~~~~---~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDL--KVSYMSG---DEFARKAVDILQKT------HKEIEQFKNEIC---Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCC--eEEEEEH---HHHHHHHHHHHHHh------hhHHHHHHHHhc---c
Confidence 35689999999999999999999765432111 3333333 44555555554321 012233444444 3
Q ss_pred cEEEEEeCCCcch---hh-hhhcCCCCC-CCCCeEEEEeeCChh---------hhhhcC-CceEEcCCCCHHHHHHHHHH
Q 038663 258 KVLIILDDVREKI---NL-AVSGIPYGE-EGNRCKVIVTSRRLD---------VCSKMS-DVTVQIEELGEEDRLKLFKQ 322 (385)
Q Consensus 258 r~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTtr~~~---------v~~~~~-~~~~~l~~L~~~~~~~lf~~ 322 (385)
.-+|||||+.... .+ +.+...+.. ...|..||+|+.... +.+.+. +-++.+++++.++..+++++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 4588999997432 22 222211111 123446888876442 233333 66889999999999999999
Q ss_pred hhCCC-C-CcchHHHHHHHHHHhCCChHHHHHHHH
Q 038663 323 IARLP-D-SEAFEGAAKVIVKACGSLPSAIAIVAG 355 (385)
Q Consensus 323 ~~~~~-~-~~~~~~~~~~I~~~c~GlPlai~~~~~ 355 (385)
.+... . ..-.+++..-|++.++|.|-.+.-+..
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 88332 1 133457888899999999987766653
No 88
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=5.9e-06 Score=83.06 Aligned_cols=190 Identities=13% Similarity=0.115 Sum_probs=108.4
Q ss_pred CCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCC-ceEEEEEcCCHHHHHHHHHHHhc
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDK-AHVIVAESSDLRRIQDKIAELLK 233 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~~~wv~vs~~~~l~~~i~~~l~ 233 (385)
+.+++|.+..+..|..++..+... .+.++|+.|+||||+|+.+.+.+........ .|. .|. + .+.|...-.
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~--~C~-~----C~~i~~~~~ 87 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG--ECS-S----CKSIDNDNS 87 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc--cch-H----HHHHHcCCC
Confidence 456889999999999999876554 5889999999999999999988642211100 000 000 0 011110000
Q ss_pred Cc---cc---cccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEee-CChhhhhhc
Q 038663 234 FK---IE---EENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTS-RRLDVCSKM 301 (385)
Q Consensus 234 ~~---~~---~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-r~~~v~~~~ 301 (385)
.. .. ....+.. ..+.+.+.. .+++-++|+|+++.. ..++.+...+.+....+.+|++| ....+...+
T Consensus 88 ~dv~~idgas~~~vddI-r~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 88 LDVIEIDGASNTSVQDV-RQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCeEEecCcccCCHHHH-HHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 00 00 0111111 122211111 115668999998754 34566655554444455555554 444443332
Q ss_pred -C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 302 -S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 302 -~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
. +..+++.+++.++....+.+.+.....+--.+.+..|++.++|.+-.+..+
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 678999999999999888887622211223466777899999977544433
No 89
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.48 E-value=4.9e-07 Score=85.26 Aligned_cols=90 Identities=22% Similarity=0.227 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-----CHHHHHHHHHHHhcCccccccHH-H-----HH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-----DLRRIQDKIAELLKFKIEEENEL-Q-----RR 245 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-----~~~~l~~~i~~~l~~~~~~~~~~-~-----~~ 245 (385)
...-..|+|++|+|||||++.||+..... +|+ ..+|+++. ...++++.+...+-......+.. . ..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFD--v~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPE--VHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCC--eEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 34567899999999999999999998765 899 99999888 44455555542211111111111 1 11
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCcc
Q 038663 246 ATLAKRLRERTKKVLIILDDVREK 269 (385)
Q Consensus 246 ~~l~~~l~~~~kr~LlVlDdv~~~ 269 (385)
-...+++...+++.+|++|++...
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHH
Confidence 122233333349999999999743
No 90
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.47 E-value=3.6e-06 Score=82.50 Aligned_cols=154 Identities=18% Similarity=0.284 Sum_probs=90.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCC
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTK 257 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 257 (385)
..-+.|+|++|+|||+|++.+++...... .. ..+.+++. .+++..+...+... . ...+.+.++. +
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~~-~~v~yi~~---~~f~~~~~~~~~~~----~----~~~f~~~~~~--~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PD-LRVMYITS---EKFLNDLVDSMKEG----K----LNEFREKYRK--K 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhC-CC-CeEEEEEH---HHHHHHHHHHHhcc----c----HHHHHHHHHh--c
Confidence 44689999999999999999999876431 11 14455543 33444554444311 1 1233444444 4
Q ss_pred cEEEEEeCCCcch---hh-hhhcCCCCC-CCCCeEEEEeeCCh-h--------hhhhcC-CceEEcCCCCHHHHHHHHHH
Q 038663 258 KVLIILDDVREKI---NL-AVSGIPYGE-EGNRCKVIVTSRRL-D--------VCSKMS-DVTVQIEELGEEDRLKLFKQ 322 (385)
Q Consensus 258 r~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTtr~~-~--------v~~~~~-~~~~~l~~L~~~~~~~lf~~ 322 (385)
.-+|+|||++... .+ ..+...+.. ...|..+|+||... . +.+.+. ...+.+++.+.+.-..++++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 6689999997431 11 122111111 11244688887532 2 122233 56889999999999999999
Q ss_pred hhCCCCCcchHHHHHHHHHHhCCC
Q 038663 323 IARLPDSEAFEGAAKVIVKACGSL 346 (385)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~Gl 346 (385)
.+......-.+++...|++.+.|.
T Consensus 275 ~~~~~~~~l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 275 MLEIEHGELPEEVLNFVAENVDDN 298 (440)
T ss_pred HHHhcCCCCCHHHHHHHHhccccC
Confidence 874331122245666677776664
No 91
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=8.3e-06 Score=80.95 Aligned_cols=191 Identities=10% Similarity=0.080 Sum_probs=107.7
Q ss_pred CCCCCcchHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhC--CCCCceEEEEEcCCHHHHHHHHHHH
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIA--PYDKAHVIVAESSDLRRIQDKIAEL 231 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~~~wv~vs~~~~l~~~i~~~ 231 (385)
.+..++|.+...+.|...+..+... .+.++|+.|+||||+|+.+.+..-... .+. ..-.|-+ ...+...
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~---pC~~C~~-----C~~~~~~ 83 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSST---PCDTCIQ-----CQSALEN 83 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCC---CCcccHH-----HHHHhhc
Confidence 3456889888889999988877665 568999999999999999998753111 100 0000000 0000000
Q ss_pred hcCc------cccccHHHHHHHHHHHHH---hcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCCh-hhhh
Q 038663 232 LKFK------IEEENELQRRATLAKRLR---ERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRL-DVCS 299 (385)
Q Consensus 232 l~~~------~~~~~~~~~~~~l~~~l~---~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~ 299 (385)
.... ......+.....+. ... ..+++-++|||+++.. +..+.+...+.+....+++|++|... .+..
T Consensus 84 ~h~dv~eldaas~~gId~IRelie-~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~ 162 (535)
T PRK08451 84 RHIDIIEMDAASNRGIDDIRELIE-QTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPA 162 (535)
T ss_pred CCCeEEEeccccccCHHHHHHHHH-HHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCch
Confidence 0000 00001111111111 111 0015668899999754 34444444443334456666665443 3322
Q ss_pred hc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 300 KM-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 300 ~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
.+ . +..+++.+++.++....+.+.+......-..+.++.|++.++|.+--+..+.
T Consensus 163 tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 163 TILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred HHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 22 2 7889999999999999998877433112224677789999999885554443
No 92
>PRK06620 hypothetical protein; Validated
Probab=98.46 E-value=7.9e-07 Score=78.53 Aligned_cols=139 Identities=14% Similarity=0.081 Sum_probs=84.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCc
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKK 258 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr 258 (385)
+.+.|+|++|+|||+|++.+.+.... .|. . .... . .+..+ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~-------~--~~~~----------------~--------~~~~~---~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA--YII-------K--DIFF----------------N--------EEILE---KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC--EEc-------c--hhhh----------------c--------hhHHh---cC
Confidence 56899999999999999987775431 121 0 0000 0 01112 34
Q ss_pred EEEEEeCCCcchh--hhhhcCCCCCCCCCeEEEEeeCChhh-------hhhcC-CceEEcCCCCHHHHHHHHHHhhCCCC
Q 038663 259 VLIILDDVREKIN--LAVSGIPYGEEGNRCKVIVTSRRLDV-------CSKMS-DVTVQIEELGEEDRLKLFKQIARLPD 328 (385)
Q Consensus 259 ~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iivTtr~~~v-------~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~ 328 (385)
-++++||++...+ +-.+...+. ..|..+++|++.... .+.+. .-++++++++.++...++++.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 5788999974322 111111111 235678888875432 23333 56899999999999999988774221
Q ss_pred CcchHHHHHHHHHHhCCChHHHHHHHHHh
Q 038663 329 SEAFEGAAKVIVKACGSLPSAIAIVAGAL 357 (385)
Q Consensus 329 ~~~~~~~~~~I~~~c~GlPlai~~~~~~L 357 (385)
-.-.+++.+-|++.+.|---.+.-+-..|
T Consensus 165 l~l~~ev~~~L~~~~~~d~r~l~~~l~~l 193 (214)
T PRK06620 165 VTISRQIIDFLLVNLPREYSKIIEILENI 193 (214)
T ss_pred CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 12234777888888887766555444333
No 93
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.45 E-value=8.4e-06 Score=76.68 Aligned_cols=169 Identities=14% Similarity=0.132 Sum_probs=93.8
Q ss_pred CCCCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCH-HHHHHHHHHHh
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDL-RRIQDKIAELL 232 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~-~~l~~~i~~~l 232 (385)
....++|.+...+.+..++..+.. .++.++|++|+|||++|+.+++.... .| ..++.++. ....+..+.
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~--~~-----~~i~~~~~~~~~i~~~l~-- 89 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA--EV-----LFVNGSDCRIDFVRNRLT-- 89 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc--cc-----eEeccCcccHHHHHHHHH--
Confidence 345688999999999998876654 56666999999999999999987531 12 12222210 111111110
Q ss_pred cCccccccHHHHHHHHHHHH--HhcCCcEEEEEeCCCcc--h-hhhhhcCCCCCCCCCeEEEEeeCChhh-hhh-cC-Cc
Q 038663 233 KFKIEEENELQRRATLAKRL--RERTKKVLIILDDVREK--I-NLAVSGIPYGEEGNRCKVIVTSRRLDV-CSK-MS-DV 304 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l--~~~~kr~LlVlDdv~~~--~-~~~~l~~~~~~~~~gs~iivTtr~~~v-~~~-~~-~~ 304 (385)
.+.... .. .+-++||||+... . ....+...+.....++++|+||..... ... .+ ..
T Consensus 90 --------------~~~~~~~~~~--~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 90 --------------RFASTVSLTG--GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred --------------HHHHhhcccC--CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 011111 12 4568899999754 1 222232222223456788888865432 121 22 56
Q ss_pred eEEcCCCCHHHHHHHHHHhh-------CCCCCcchHHHHHHHHHHhCCChH
Q 038663 305 TVQIEELGEEDRLKLFKQIA-------RLPDSEAFEGAAKVIVKACGSLPS 348 (385)
Q Consensus 305 ~~~l~~L~~~~~~~lf~~~~-------~~~~~~~~~~~~~~I~~~c~GlPl 348 (385)
.+.++..+.++..+++.... .....+-..+....+++.++|---
T Consensus 154 ~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r 204 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFR 204 (316)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHH
Confidence 78888888888776654322 111111223455667766665443
No 94
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.45 E-value=1.9e-06 Score=91.06 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=100.5
Q ss_pred CCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhC--CCCCceEEEEEcCCHHHHHHHHHHHh
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIA--PYDKAHVIVAESSDLRRIQDKIAELL 232 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~~~wv~vs~~~~l~~~i~~~l 232 (385)
...+++||+++++.+++.|.......+.++|++|+|||++|+.++....... .+-....+|. + +...++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l-~~~~l~a------ 248 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L-DIGLLLA------ 248 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e-eHHHHhc------
Confidence 4567899999999999999876666778999999999999999998864321 0111133442 1 2222111
Q ss_pred cCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch---------hhhhhcCCCCCCCCCeEEEEeeCChhhh-----
Q 038663 233 KFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI---------NLAVSGIPYGEEGNRCKVIVTSRRLDVC----- 298 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtr~~~v~----- 298 (385)
+... ..+-++....+.+.+... ++.+|+||+++... +...+..+....+ ..++|.+|......
T Consensus 249 g~~~-~ge~e~rl~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie~ 325 (821)
T CHL00095 249 GTKY-RGEFEERLKRIFDEIQEN-NNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIEK 325 (821)
T ss_pred cCCC-ccHHHHHHHHHHHHHHhc-CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHhc
Confidence 1111 111222333344444432 78999999997431 1122222222222 24455555544321
Q ss_pred --hhcC-CceEEcCCCCHHHHHHHHHHhhCC----CCCcchHHHHHHHHHHhCC
Q 038663 299 --SKMS-DVTVQIEELGEEDRLKLFKQIARL----PDSEAFEGAAKVIVKACGS 345 (385)
Q Consensus 299 --~~~~-~~~~~l~~L~~~~~~~lf~~~~~~----~~~~~~~~~~~~I~~~c~G 345 (385)
.... ...+.+...+.++...++...... ....-..+....++..++|
T Consensus 326 D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 326 DPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred CHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 1122 567889999999988888754310 0111223455556666654
No 95
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.44 E-value=1e-05 Score=74.77 Aligned_cols=131 Identities=11% Similarity=0.089 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCc
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKK 258 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr 258 (385)
..+.++|++|+|||++|+.+.+......... ...++.++. .++.. .+.. .+.. .+.+.+... ..
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~--~~~~v~v~~-~~l~~----~~~g----~~~~----~~~~~~~~a-~~ 122 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVR--KGHLVSVTR-DDLVG----QYIG----HTAP----KTKEILKRA-MG 122 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcc--cceEEEecH-HHHhH----hhcc----cchH----HHHHHHHHc-cC
Confidence 3688999999999999999888765432222 122444442 12221 1111 1111 122233322 44
Q ss_pred EEEEEeCCCcc-----------hhhhhhcCCCCCCCCCeEEEEeeCChhhhhh-------cC--CceEEcCCCCHHHHHH
Q 038663 259 VLIILDDVREK-----------INLAVSGIPYGEEGNRCKVIVTSRRLDVCSK-------MS--DVTVQIEELGEEDRLK 318 (385)
Q Consensus 259 ~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~-------~~--~~~~~l~~L~~~~~~~ 318 (385)
-+|+|||+... ..+..+...+.....+.+||+++.....-.. .. ...+++++++.+|...
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 68999998632 1223333333334456677777765432111 11 4679999999999999
Q ss_pred HHHHhhC
Q 038663 319 LFKQIAR 325 (385)
Q Consensus 319 lf~~~~~ 325 (385)
++.+.+.
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9998873
No 96
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.44 E-value=5.5e-06 Score=80.02 Aligned_cols=204 Identities=17% Similarity=0.225 Sum_probs=112.3
Q ss_pred CCCCCcchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCH
Q 038663 155 DYVPLESSSKALNSIMKLLKD-------------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDL 221 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~ 221 (385)
.+..+.|++..+++|.+.+.. ...+.+.++|++|+|||++|+.+++.... .|- .++ .
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~--~~i-------~v~-~ 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TFI-------RVV-G 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC--CEE-------Eee-h
Confidence 344678999998888876531 24567999999999999999999987652 222 222 1
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch------------h----hhhhcCCCC--CCC
Q 038663 222 RRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI------------N----LAVSGIPYG--EEG 283 (385)
Q Consensus 222 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~--~~~ 283 (385)
..+.. .. .. ........+.+..+.. .+.+|+|||+.... . +..+...+. ...
T Consensus 199 ~~l~~----~~----~g-~~~~~i~~~f~~a~~~-~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SELVQ----KF----IG-EGARLVRELFELAREK-APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HHHhH----hh----cc-chHHHHHHHHHHHHhc-CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 11111 10 00 1111222333333331 67899999987531 0 111111111 122
Q ss_pred CCeEEEEeeCChhhhh--hc--C--CceEEcCCCCHHHHHHHHHHhhCCC-CCcchHHHHHHHHHHhCCChHH----HHH
Q 038663 284 NRCKVIVTSRRLDVCS--KM--S--DVTVQIEELGEEDRLKLFKQIARLP-DSEAFEGAAKVIVKACGSLPSA----IAI 352 (385)
Q Consensus 284 ~gs~iivTtr~~~v~~--~~--~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~I~~~c~GlPla----i~~ 352 (385)
.+..||.||....... .. + +..+.+++.+.++..++|+.++... .... .....+++.+.|+--| +..
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~--~~~~~la~~t~g~sgadl~~l~~ 346 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD--VDLEELAELTEGASGADLKAICT 346 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc--CCHHHHHHHcCCCCHHHHHHHHH
Confidence 3567787876644311 11 2 5689999999999999999887433 1111 1134467777776522 222
Q ss_pred HHHHhcCCCCCCcchhhhhhHHHHHHHHHh
Q 038663 353 VAGALRGKLANESNESLVNIWNDAVEEVIR 382 (385)
Q Consensus 353 ~~~~L~~~~~~~~~~~~~~~W~~~~~~l~~ 382 (385)
-|++.+-+.. ...++.+....+++.+..
T Consensus 347 eA~~~a~~~~--~~~i~~~d~~~A~~~~~~ 374 (389)
T PRK03992 347 EAGMFAIRDD--RTEVTMEDFLKAIEKVMG 374 (389)
T ss_pred HHHHHHHHcC--CCCcCHHHHHHHHHHHhc
Confidence 2233221110 112357777777777654
No 97
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=9.3e-06 Score=82.59 Aligned_cols=193 Identities=13% Similarity=0.113 Sum_probs=108.5
Q ss_pred CCCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcC
Q 038663 156 YVPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKF 234 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~ 234 (385)
+..++|.+.....|..++..+.. ..+.++|+.|+||||+|+.+++.+....... ... ... ......+.+......
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~--~~~-~~C-g~C~~C~~i~~g~h~ 90 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK--PTP-EPC-GKCELCRAIAAGNAL 90 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC--CCC-CCC-cccHHHHHHhcCCCc
Confidence 45678999899999998887654 5788999999999999999999865321111 000 000 111222222211111
Q ss_pred cc------ccccHHHHHHHHHHHHHhc---CCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEE-eeCChhhhhhc-
Q 038663 235 KI------EEENELQRRATLAKRLRER---TKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIV-TSRRLDVCSKM- 301 (385)
Q Consensus 235 ~~------~~~~~~~~~~~l~~~l~~~---~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-Ttr~~~v~~~~- 301 (385)
.. .....+.. ..+.+.+... +++-++|||+++.. ..++.|...+.+....+.+|+ |+....+...+
T Consensus 91 D~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 91 DVIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred cEEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 00 00111111 1222222110 15568899999854 345555444443334455554 44444343332
Q ss_pred C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 302 S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 302 ~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
. +..+++.+++.++....+...+......-..+.+..|++.++|.+..+..+
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 778999999999988888876643211122355778999999977655443
No 98
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.42 E-value=2e-06 Score=91.11 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=92.6
Q ss_pred CCCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCC--CceEEEEEcCCHHHHHHHHHHH
Q 038663 154 PDYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYD--KAHVIVAESSDLRRIQDKIAEL 231 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~~~wv~vs~~~~l~~~i~~~ 231 (385)
....+++||+.++..++..|.......+.++|++|+|||++++.+.+......... ....+|.. +...++.
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l--~~~~l~a----- 242 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL--DMGALIA----- 242 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe--eHHHHhh-----
Confidence 34567999999999999999876666778999999999999999998864321110 00222211 1111110
Q ss_pred hcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch---------hhhhhcCCCCCCCCCeEEEEeeCChhhh----
Q 038663 232 LKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI---------NLAVSGIPYGEEGNRCKVIVTSRRLDVC---- 298 (385)
Q Consensus 232 l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtr~~~v~---- 298 (385)
+... ..+.......+.+.+....++.+|+||+++... +...+..++...+ ..++|.+|......
T Consensus 243 -~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r~~~~ 319 (852)
T TIGR03346 243 -GAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYRKYIE 319 (852)
T ss_pred -cchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHHHHhh
Confidence 0000 011222333334444332268999999998542 1222323333333 33455555444321
Q ss_pred ---hhcC-CceEEcCCCCHHHHHHHHHHhh
Q 038663 299 ---SKMS-DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 299 ---~~~~-~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
.... ...+.+...+.++...++....
T Consensus 320 ~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 320 KDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1112 5668899999999999887654
No 99
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.42 E-value=2.2e-06 Score=84.55 Aligned_cols=181 Identities=18% Similarity=0.244 Sum_probs=103.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCC
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTK 257 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 257 (385)
...+.|+|++|+|||+|++.+.+..... +....+++++.. .+...+...+.. . ....+.+.++.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~v~yi~~~---~~~~~~~~~~~~----~----~~~~~~~~~~~--- 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEK--NPNAKVVYVTSE---KFTNDFVNALRN----N----TMEEFKEKYRS--- 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHh--CCCCeEEEEEHH---HHHHHHHHHHHc----C----cHHHHHHHHhc---
Confidence 3568999999999999999999997643 221144455443 333334433321 1 11233444443
Q ss_pred cEEEEEeCCCcch---hh-hhhcCCCCC-CCCCeEEEEeeCChh---------hhhhcC-CceEEcCCCCHHHHHHHHHH
Q 038663 258 KVLIILDDVREKI---NL-AVSGIPYGE-EGNRCKVIVTSRRLD---------VCSKMS-DVTVQIEELGEEDRLKLFKQ 322 (385)
Q Consensus 258 r~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTtr~~~---------v~~~~~-~~~~~l~~L~~~~~~~lf~~ 322 (385)
.-+|+|||++... .+ ..+...+.. ...|..+|+|+.... +.+.+. ...+++++.+.++...++++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 4488999997431 11 122111111 112445777776542 123333 56899999999999999999
Q ss_pred hhCCCCCcchHHHHHHHHHHhCCChHHHH----HHHHH--hcCCCCCCcchhhhhhHHHHHHHH
Q 038663 323 IARLPDSEAFEGAAKVIVKACGSLPSAIA----IVAGA--LRGKLANESNESLVNIWNDAVEEV 380 (385)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~GlPlai~----~~~~~--L~~~~~~~~~~~~~~~W~~~~~~l 380 (385)
.+......-.+++..-|++.++|..-.+. .+..+ +..+. ++....+.++..+
T Consensus 292 ~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~------it~~~~~~~l~~~ 349 (450)
T PRK00149 292 KAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKP------ITLELAKEALKDL 349 (450)
T ss_pred HHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCC------CCHHHHHHHHHHh
Confidence 88432222234677778888887765332 22221 12222 2577777777655
No 100
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.8e-05 Score=71.72 Aligned_cols=205 Identities=19% Similarity=0.254 Sum_probs=121.9
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEE
Q 038663 150 DLATPDYVPLESSSKALNSIMKLLK----D---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVA 216 (385)
Q Consensus 150 ~~~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv 216 (385)
..|...+..+=|-++.+++|.+... + +.++-|.+|||+|+|||-||+.|+++... .|=
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A--tFI------- 214 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA--TFI------- 214 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc--eEE-------
Confidence 3455555667788888888887764 1 35778999999999999999999998663 243
Q ss_pred EcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-------------h---hhhhc---C
Q 038663 217 ESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI-------------N---LAVSG---I 277 (385)
Q Consensus 217 ~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-------------~---~~~l~---~ 277 (385)
.+. -.++.+..- .....+...+.+.-+.+ .+++|++|++.... . .-+|. .
T Consensus 215 rvv-----gSElVqKYi-----GEGaRlVRelF~lArek-aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD 283 (406)
T COG1222 215 RVV-----GSELVQKYI-----GEGARLVRELFELAREK-APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLD 283 (406)
T ss_pred Eec-----cHHHHHHHh-----ccchHHHHHHHHHHhhc-CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhcc
Confidence 111 111221111 11223445555555554 88999999986431 0 11111 1
Q ss_pred CCCCCCCCeEEEEeeCChhhhh--hc--C--CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChH
Q 038663 278 PYGEEGNRCKVIVTSRRLDVCS--KM--S--DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPS 348 (385)
Q Consensus 278 ~~~~~~~gs~iivTtr~~~v~~--~~--~--~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPl 348 (385)
-|. ...+.+||..|...++.. .+ + ++.++++.-+.+.-.++|+-+.... ++-+++. |++.|.|+-=
T Consensus 284 GFD-~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~~g~sG 358 (406)
T COG1222 284 GFD-PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL----LARLTEGFSG 358 (406)
T ss_pred CCC-CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHH----HHHhcCCCch
Confidence 222 234678998887766522 22 2 7889998666666667777776443 3344444 7778887763
Q ss_pred ----HHHHHHHHhcCCCCCCcchhhhhhHHHHHHHHH
Q 038663 349 ----AIAIVAGALRGKLANESNESLVNIWNDAVEEVI 381 (385)
Q Consensus 349 ----ai~~~~~~L~~~~~~~~~~~~~~~W~~~~~~l~ 381 (385)
|+.+=|++++=+. +....+.+++..+.++..
T Consensus 359 AdlkaictEAGm~AiR~--~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 359 ADLKAICTEAGMFAIRE--RRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHHHHHhHHHHHh--ccCeecHHHHHHHHHHHH
Confidence 4555566654432 112234666666665543
No 101
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.37 E-value=1.1e-05 Score=85.23 Aligned_cols=160 Identities=15% Similarity=0.195 Sum_probs=90.6
Q ss_pred CCCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCC---CCCceEEEEEcCCHHHHHHHHHH
Q 038663 154 PDYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAP---YDKAHVIVAESSDLRRIQDKIAE 230 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---F~~~~~~wv~vs~~~~l~~~i~~ 230 (385)
....+++||+.++..+++.|.......+.++|++|+|||++|+.+......... ..+...+.+..+. +..
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~---l~a---- 247 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA---LVA---- 247 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh---hhh----
Confidence 445679999999999999998766667889999999999999999998643211 1111222222221 110
Q ss_pred HhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch---------hhhhhcCCCCCCCCCeEEEEeeCChhh----
Q 038663 231 LLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI---------NLAVSGIPYGEEGNRCKVIVTSRRLDV---- 297 (385)
Q Consensus 231 ~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtr~~~v---- 297 (385)
+... ..........+.+.+....++.+|+||+++... +-..+..+....+ ..++|-+|.....
T Consensus 248 --g~~~-~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r~~~ 323 (857)
T PRK10865 248 --GAKY-RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQYI 323 (857)
T ss_pred --ccch-hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHHHHh
Confidence 0000 011122223333333222278999999997542 1223333333333 3345555444332
Q ss_pred ---hhhcC-CceEEcCCCCHHHHHHHHHHhh
Q 038663 298 ---CSKMS-DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 298 ---~~~~~-~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
..... ...+.+..-+.++...++....
T Consensus 324 ~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 324 EKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11112 4456666668899888887654
No 102
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.36 E-value=4.8e-06 Score=80.53 Aligned_cols=131 Identities=24% Similarity=0.290 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHH
Q 038663 163 SKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENEL 242 (385)
Q Consensus 163 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~ 242 (385)
..-...+.+.+..... ++.|+||.++|||||++.+....... .+.+..-+...- ..
T Consensus 23 ~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-------~iy~~~~d~~~~----------------~~ 78 (398)
T COG1373 23 RKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-------IIYINFDDLRLD----------------RI 78 (398)
T ss_pred HhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-------eEEEEecchhcc----------------hh
Confidence 3444555555544333 99999999999999997776655422 122222211110 01
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhh-----hhhcC--CceEEcCCCCHH
Q 038663 243 QRRATLAKRLRER-TKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDV-----CSKMS--DVTVQIEELGEE 314 (385)
Q Consensus 243 ~~~~~l~~~l~~~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v-----~~~~~--~~~~~l~~L~~~ 314 (385)
++.+.+..+.... .++..|+||+|+...+|......+.+.++. +|++|+-+... +.... ...+++.||+-.
T Consensus 79 ~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 79 ELLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred hHHHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 1111122222110 056899999999999998776666665555 78888877654 22222 678999999999
Q ss_pred HHHH
Q 038663 315 DRLK 318 (385)
Q Consensus 315 ~~~~ 318 (385)
|-..
T Consensus 158 Efl~ 161 (398)
T COG1373 158 EFLK 161 (398)
T ss_pred HHHh
Confidence 8865
No 103
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.35 E-value=1.9e-06 Score=81.65 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=60.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-----CHHHHHHHHHHHhcCc-cccccH-----HHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-----DLRRIQDKIAELLKFK-IEEENE-----LQRR 245 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-----~~~~l~~~i~~~l~~~-~~~~~~-----~~~~ 245 (385)
....++|+|++|+|||||++.+++..... +|+ ..+|+.+. +..++++.+...+-.. .+.... ....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfd--v~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPE--VELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCc--eEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 44688999999999999999999998754 798 88899888 6677777774333221 111111 1111
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCcc
Q 038663 246 ATLAKRLRERTKKVLIILDDVREK 269 (385)
Q Consensus 246 ~~l~~~l~~~~kr~LlVlDdv~~~ 269 (385)
....+++...+++.+|++|++...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 122223333349999999999743
No 104
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.33 E-value=2.1e-05 Score=78.58 Aligned_cols=202 Identities=17% Similarity=0.222 Sum_probs=106.1
Q ss_pred CCCCCCCcchHHHHHHHHH---Hhcc---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCC
Q 038663 153 TPDYVPLESSSKALNSIMK---LLKD---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSD 220 (385)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~---~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~ 220 (385)
...+.++.|.+...+.+.+ ++.. ...+-+.++||+|+|||+||+.+...... .| +.++
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--~~-------~~i~- 120 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--PF-------FSIS- 120 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--Ce-------eecc-
Confidence 3344456777665554444 3321 23456899999999999999999987542 12 2222
Q ss_pred HHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch------------h----hhhhcCCCC--CC
Q 038663 221 LRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI------------N----LAVSGIPYG--EE 282 (385)
Q Consensus 221 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~--~~ 282 (385)
...+.. ... ......+...+...... .+.+|+|||++... . ...+...+. ..
T Consensus 121 ~~~~~~----~~~----g~~~~~l~~~f~~a~~~--~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 121 GSDFVE----MFV----GVGASRVRDLFEQAKKN--APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HHHHHH----HHh----cccHHHHHHHHHHHHhc--CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 111111 100 11111222223333333 67999999996431 0 111111111 12
Q ss_pred CCCeEEEEeeCChhh---hhh--cC-CceEEcCCCCHHHHHHHHHHhhCCC-CCcchHHHHHHHHHHhCCCh-HHHHHHH
Q 038663 283 GNRCKVIVTSRRLDV---CSK--MS-DVTVQIEELGEEDRLKLFKQIARLP-DSEAFEGAAKVIVKACGSLP-SAIAIVA 354 (385)
Q Consensus 283 ~~gs~iivTtr~~~v---~~~--~~-~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~I~~~c~GlP-lai~~~~ 354 (385)
..+..||.||..... +-. -. +..+.+...+.++-.++|...+... ..+ ......+++.+.|+. --|..+.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~--~~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP--DVDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc--chhHHHHHHhCCCCCHHHHHHHH
Confidence 235567777765432 111 12 6789999999999999998877443 111 122346888888854 3333332
Q ss_pred H---Hh--cCCCCCCcchhhhhhHHHHHHHH
Q 038663 355 G---AL--RGKLANESNESLVNIWNDAVEEV 380 (385)
Q Consensus 355 ~---~L--~~~~~~~~~~~~~~~W~~~~~~l 380 (385)
. +. +... ..++.+..+.++++.
T Consensus 269 ~eA~~~a~~~~~----~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 269 NEAALLAARKNK----TEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHcCC----CCCCHHHHHHHHHHH
Confidence 1 21 1111 112567777777655
No 105
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.32 E-value=0.0001 Score=65.22 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=105.7
Q ss_pred cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHHHHHhcCccccc---cHHHHHHHHH
Q 038663 175 DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKIAELLKFKIEEE---NELQRRATLA 249 (385)
Q Consensus 175 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i~~~l~~~~~~~---~~~~~~~~l~ 249 (385)
.++.+++.++|.-|+|||++.+.+.......+ .+.+.+... +...+...++..+..+.... ........+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~----~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQ----VAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCc----eEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 45567999999999999999996555544221 133333333 66777788888776522111 1233445566
Q ss_pred HHHHhcCCc-EEEEEeCCCcc--hhhhhhcC--CCC-CCCCCeEEEEeeCChhh-------hhhcC--Cce-EEcCCCCH
Q 038663 250 KRLRERTKK-VLIILDDVREK--INLAVSGI--PYG-EEGNRCKVIVTSRRLDV-------CSKMS--DVT-VQIEELGE 313 (385)
Q Consensus 250 ~~l~~~~kr-~LlVlDdv~~~--~~~~~l~~--~~~-~~~~gs~iivTtr~~~v-------~~~~~--~~~-~~l~~L~~ 313 (385)
+.++++ ++ ..+++||.+.. .....+.. .+. +....-+|+.....+-. ..... ..+ |+++|++.
T Consensus 124 al~~~g-~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 124 ALVKKG-KRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHhC-CCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 666654 66 99999998754 22222211 111 11122234444332211 11111 334 99999999
Q ss_pred HHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 314 EDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 314 ~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
++...++..+++.. .+--..+....|.....|.|.+|..++
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 99999999887333 222334667789999999999998776
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.29 E-value=1.1e-05 Score=80.81 Aligned_cols=152 Identities=14% Similarity=0.233 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCc
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKK 258 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr 258 (385)
..+.|+|..|+|||.|++.+++..... +.+..+++++. .+++..+...+.. .....+.+.++. -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~--~~g~~V~Yita---eef~~el~~al~~--------~~~~~f~~~y~~---~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRL--YPGTRVRYVSS---EEFTNEFINSIRD--------GKGDSFRRRYRE---M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh--CCCCeEEEeeH---HHHHHHHHHHHHh--------ccHHHHHHHhhc---C
Confidence 458999999999999999999987532 21113444443 3333333333321 011233444443 4
Q ss_pred EEEEEeCCCcc---hhhhh-hcCCCCC-CCCCeEEEEeeCChh---------hhhhcC-CceEEcCCCCHHHHHHHHHHh
Q 038663 259 VLIILDDVREK---INLAV-SGIPYGE-EGNRCKVIVTSRRLD---------VCSKMS-DVTVQIEELGEEDRLKLFKQI 323 (385)
Q Consensus 259 ~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~iivTtr~~~---------v~~~~~-~~~~~l~~L~~~~~~~lf~~~ 323 (385)
=+|+|||+... ..|.. +...+.. ...|..||+||+... +.+.+. .-++.|++.+.+.-.++++++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 57889999743 22221 2111111 123456888887631 233444 778999999999999999998
Q ss_pred hCCCCCcchHHHHHHHHHHhCCC
Q 038663 324 ARLPDSEAFEGAAKVIVKACGSL 346 (385)
Q Consensus 324 ~~~~~~~~~~~~~~~I~~~c~Gl 346 (385)
+......--+++.+-|++.+.+.
T Consensus 459 a~~r~l~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 459 AVQEQLNAPPEVLEFIASRISRN 481 (617)
T ss_pred HHhcCCCCCHHHHHHHHHhccCC
Confidence 84331122235555565555544
No 107
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.26 E-value=6.7e-05 Score=68.52 Aligned_cols=190 Identities=17% Similarity=0.171 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhcc---CCceEEEEEcCCCCchHHHHHHHHHHhhhhCC--CCCceEEEEEcC---CHHHHHHHHHHHhcC
Q 038663 163 SKALNSIMKLLKD---EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAP--YDKAHVIVAESS---DLRRIQDKIAELLKF 234 (385)
Q Consensus 163 ~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~~~wv~vs---~~~~l~~~i~~~l~~ 234 (385)
.+-++.|.+.+.. ...+.+.|||.+|.|||++++.+......... -....++.+... +...+...|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 4456666666653 34578999999999999999999976542211 110123334433 899999999999998
Q ss_pred ccccc-cHHHHHHHHHHHHHhcCCcEEEEEeCCCcch---------hhhhhcCCCCCCCCCeEEEEeeCChhhhhhc---
Q 038663 235 KIEEE-NELQRRATLAKRLRERTKKVLIILDDVREKI---------NLAVSGIPYGEEGNRCKVIVTSRRLDVCSKM--- 301 (385)
Q Consensus 235 ~~~~~-~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~--- 301 (385)
+.... ............++.- +-=+||||++++.. ..+.+ ..+.+.-.-+-|.+-|+...-+-..
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~-~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRL-GVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHc-CCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 76443 3444455555666654 56689999998741 11111 1222222233455555433221111
Q ss_pred --C-CceEEcCCCCH-HHHHHHHHHhh---CCC--CCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 302 --S-DVTVQIEELGE-EDRLKLFKQIA---RLP--DSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 302 --~-~~~~~l~~L~~-~~~~~lf~~~~---~~~--~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
+ ...+.|++-.. ++...|+.... .-. ..-...++++.|...|+|+.=-+..+-
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 1 34555555444 34444444322 111 223446889999999999986655443
No 108
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.26 E-value=6.5e-06 Score=85.33 Aligned_cols=160 Identities=20% Similarity=0.239 Sum_probs=93.4
Q ss_pred CCCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhC-CCC-CceEEEEEcCCHHHHHHHHHHH
Q 038663 154 PDYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIA-PYD-KAHVIVAESSDLRRIQDKIAEL 231 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~-~~~~~wv~vs~~~~l~~~i~~~ 231 (385)
....+++||+.++..+++.|.......+.++|++|+|||++|+.+++...... .|. ..+.+|.. +...++.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l--~~~~lla----- 255 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL--DIGSLLA----- 255 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec--cHHHHhc-----
Confidence 44567999999999999998876556678999999999999999998753221 111 00333311 2111110
Q ss_pred hcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc----------hhhhhhcCCCCCCCCCeEEEEeeCChhhh---
Q 038663 232 LKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK----------INLAVSGIPYGEEGNRCKVIVTSRRLDVC--- 298 (385)
Q Consensus 232 l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~iivTtr~~~v~--- 298 (385)
+.. ...+.......+...+... ++.+|+|||++.. .+...+..++...+ ..++|.+|......
T Consensus 256 -G~~-~~Ge~e~rl~~l~~~l~~~-~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 256 -GTK-YRGDFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIF 331 (758)
T ss_pred -ccc-hhhhHHHHHHHHHHHHHhc-CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHh
Confidence 000 0111222333344444432 6789999999743 11222222332222 34555555544321
Q ss_pred ----hhcC-CceEEcCCCCHHHHHHHHHHhh
Q 038663 299 ----SKMS-DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 299 ----~~~~-~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
...+ ...+.+++.+.++...+++...
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1122 5689999999999999998654
No 109
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.25 E-value=1.3e-05 Score=79.04 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=91.1
Q ss_pred CCCCCCCCcchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCC---CCCceEEE
Q 038663 152 ATPDYVPLESSSKALNSIMKLLKD-------------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAP---YDKAHVIV 215 (385)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---F~~~~~~w 215 (385)
|...+.++.|.+..++.|.+.+.- ...+-+.++||+|+|||++|+.+++....... +. ...+
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~--~~~f 254 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD--KSYF 254 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC--ceeE
Confidence 333445677888888888776531 23467899999999999999999998753210 11 2333
Q ss_pred EEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcch---------h-----hhhhcCC
Q 038663 216 AESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRE---RTKKVLIILDDVREKI---------N-----LAVSGIP 278 (385)
Q Consensus 216 v~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~~---------~-----~~~l~~~ 278 (385)
+.+... +++.. .... .......+.+..+. .+++++|+|||++... + ...+...
T Consensus 255 l~v~~~-eLl~k--------yvGe-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 255 LNIKGP-ELLNK--------YVGE-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred Eeccch-hhccc--------ccch-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 343311 11110 0001 11111122222211 1268999999997431 1 1122111
Q ss_pred CCC--CCCCeEEEEeeCChhh---hhhc--C-CceEEcCCCCHHHHHHHHHHhhCC
Q 038663 279 YGE--EGNRCKVIVTSRRLDV---CSKM--S-DVTVQIEELGEEDRLKLFKQIARL 326 (385)
Q Consensus 279 ~~~--~~~gs~iivTtr~~~v---~~~~--~-~~~~~l~~L~~~~~~~lf~~~~~~ 326 (385)
+.. ...+..||.||..... +-.. . +..+.+.+.+.++..++|..++..
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 211 1234556777755543 1111 2 667999999999999999998753
No 110
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.23 E-value=1.3e-05 Score=64.74 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=21.4
Q ss_pred EEEEcCCCCchHHHHHHHHHHhh
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
|.|+|++|+|||++|+.+.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999975
No 111
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.22 E-value=1.4e-05 Score=77.65 Aligned_cols=203 Identities=15% Similarity=0.211 Sum_probs=111.1
Q ss_pred CCCCCCCCcchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEc
Q 038663 152 ATPDYVPLESSSKALNSIMKLLK----D---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAES 218 (385)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~v 218 (385)
|...+.++.|.+..++.|.+.+. . ...+.+.++|++|+|||+||+.+++.... .|- . +..
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~fi--~---V~~ 250 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TFL--R---VVG 250 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CEE--E---Eec
Confidence 33445567788888888877663 1 23457889999999999999999997652 232 1 111
Q ss_pred CCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------------hhhhhcCCCC--
Q 038663 219 SDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPYG-- 280 (385)
Q Consensus 219 s~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~-- 280 (385)
++ +.. ... .. .......+.+..... .+.+|+||++.... .+..+...+.
T Consensus 251 se---L~~----k~~----Ge-~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 251 SE---LIQ----KYL----GD-GPKLVRELFRVAEEN-APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred ch---hhh----hhc----ch-HHHHHHHHHHHHHhC-CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 11 111 100 00 111122222222222 67899999975321 0111111111
Q ss_pred CCCCCeEEEEeeCChhhhh-h-c--C--CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChHH--
Q 038663 281 EEGNRCKVIVTSRRLDVCS-K-M--S--DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPSA-- 349 (385)
Q Consensus 281 ~~~~gs~iivTtr~~~v~~-~-~--~--~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPla-- 349 (385)
....+..||+||....... . + + +..+.+.+.+.++..++|..++... ....+ ..++..+.|+--|
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~sgAdI 393 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELSGADI 393 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCCHHHH
Confidence 1123567888887554321 1 1 2 6789999999999999999877433 22233 3356666665543
Q ss_pred --HHHHHHHhcCCCCCCcchhhhhhHHHHHHHH
Q 038663 350 --IAIVAGALRGKLANESNESLVNIWNDAVEEV 380 (385)
Q Consensus 350 --i~~~~~~L~~~~~~~~~~~~~~~W~~~~~~l 380 (385)
+..-|++++-+.. ...++.+.++.++++.
T Consensus 394 ~~i~~eA~~~Alr~~--r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 394 KAICTEAGLLALRER--RMKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHHHHHHHHHHhc--CCccCHHHHHHHHHHH
Confidence 3333444332221 1123577777777665
No 112
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.00053 Score=70.42 Aligned_cols=190 Identities=16% Similarity=0.159 Sum_probs=111.0
Q ss_pred CcchHHHHHHHHHHhc-------c--CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHH--HH
Q 038663 159 LESSSKALNSIMKLLK-------D--EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQ--DK 227 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~-------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~--~~ 227 (385)
++|.+..+..+.+.+. + ....+...+||.|+|||-||+.+...+-... + ..+-+..| +.. ..
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~--aliR~DMS---Ey~EkHs 565 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--Q--ALIRIDMS---EYMEKHS 565 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--c--cceeechH---HHHHHHH
Confidence 6788888888887764 1 2456888899999999999999998864322 1 22223333 222 22
Q ss_pred HHHHhcCccccccHHHHHHHHHHHHHhcCCcE-EEEEeCCCcc--hhhhhhcCCCCCC-----------CCCeEEEEeeC
Q 038663 228 IAELLKFKIEEENELQRRATLAKRLRERTKKV-LIILDDVREK--INLAVSGIPYGEE-----------GNRCKVIVTSR 293 (385)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~iivTtr 293 (385)
+..-++.+...-.-+ --..|-+.++. ++| +|.||++... +.++-+...|.++ -.++-||+||.
T Consensus 566 VSrLIGaPPGYVGye-eGG~LTEaVRr--~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 566 VSRLIGAPPGYVGYE-EGGQLTEAVRR--KPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred HHHHhCCCCCCceec-cccchhHhhhc--CCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 233333322211111 13455566666 777 7889999743 4455554444332 13567888885
Q ss_pred Chh---------------------h---------hhhcC--CceEEcCCCCHHHHHHHHHHhhC--------CC-CCcch
Q 038663 294 RLD---------------------V---------CSKMS--DVTVQIEELGEEDRLKLFKQIAR--------LP-DSEAF 332 (385)
Q Consensus 294 ~~~---------------------v---------~~~~~--~~~~~l~~L~~~~~~~lf~~~~~--------~~-~~~~~ 332 (385)
-.. + +..++ +.++...+|+.++..++....+. .. .-.-.
T Consensus 643 ~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s 722 (786)
T COG0542 643 AGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELS 722 (786)
T ss_pred cchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEEC
Confidence 321 0 11123 56899999999998887776551 11 11122
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhc
Q 038663 333 EGAAKVIVKACGSLPSAIAIVAGALR 358 (385)
Q Consensus 333 ~~~~~~I~~~c~GlPlai~~~~~~L~ 358 (385)
.++...|+++|..-.....-+.+.+.
T Consensus 723 ~~a~~~l~~~gyd~~~GARpL~R~Iq 748 (786)
T COG0542 723 DEAKDFLAEKGYDPEYGARPLRRAIQ 748 (786)
T ss_pred HHHHHHHHHhccCCCcCchHHHHHHH
Confidence 35556677777765555555555543
No 113
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.22 E-value=0.00013 Score=64.62 Aligned_cols=116 Identities=19% Similarity=0.228 Sum_probs=71.0
Q ss_pred CCCCcchHHHHHHHHHHh----ccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHH
Q 038663 156 YVPLESSSKALNSIMKLL----KDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAEL 231 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~ 231 (385)
...++|.+...+.|++.. .+.....+.++|..|+|||+|++.+.+...... . . -|.+.
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G-L---R--lIev~------------ 87 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG-L---R--LIEVS------------ 87 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC-c---e--EEEEC------------
Confidence 445788888887777644 355667889999999999999999999877542 1 1 12222
Q ss_pred hcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCc---chhhhhhcCCCC----CCCCCeEEEEeeCChh
Q 038663 232 LKFKIEEENELQRRATLAKRLRERTKKVLIILDDVRE---KINLAVSGIPYG----EEGNRCKVIVTSRRLD 296 (385)
Q Consensus 232 l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~---~~~~~~l~~~~~----~~~~gs~iivTtr~~~ 296 (385)
.+.-.....|.+.+++...+|+|++||+.= ......+...+. ....+..|.+||..++
T Consensus 88 -------k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 88 -------KEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred -------HHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 001111233444455444899999999852 233444433332 2233556666775554
No 114
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.22 E-value=2.9e-05 Score=74.96 Aligned_cols=203 Identities=16% Similarity=0.172 Sum_probs=109.8
Q ss_pred CCCCCCCCcchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEc
Q 038663 152 ATPDYVPLESSSKALNSIMKLLK----D---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAES 218 (385)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~v 218 (385)
|...+.++.|.+..+++|.+.+. . ...+.+.++|++|+|||+||+.+++.... .|- .+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--~fi-----~i~~ 212 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--TFI-----RVVG 212 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CEE-----EEeh
Confidence 44445567788877777776553 1 24578999999999999999999987642 222 1111
Q ss_pred CCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------------hhhhhcCCCC--
Q 038663 219 SDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPYG-- 280 (385)
Q Consensus 219 s~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~-- 280 (385)
+ .+ ..... ... ......+....+.. .+.+|+|||+.... .+..+...+.
T Consensus 213 s---~l----~~k~~----ge~-~~~lr~lf~~A~~~-~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 S---EF----VQKYL----GEG-PRMVRDVFRLAREN-APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred H---HH----HHHhc----chh-HHHHHHHHHHHHhc-CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 1 11 11100 011 11222233333322 78999999976321 0111111111
Q ss_pred CCCCCeEEEEeeCChhhh-h-hc---C-CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChHH--
Q 038663 281 EEGNRCKVIVTSRRLDVC-S-KM---S-DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPSA-- 349 (385)
Q Consensus 281 ~~~~gs~iivTtr~~~v~-~-~~---~-~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPla-- 349 (385)
....+..||+||...... . .+ . +..+.+.+.+.++...+|+...... .+.++ .++++.+.|+.-|
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~sgaDI 355 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKISAADI 355 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCCHHHH
Confidence 122456788888755432 1 12 2 6779999999999888888776432 22233 3466777776543
Q ss_pred --HHHHHHHhcCCCCCCcchhhhhhHHHHHHHH
Q 038663 350 --IAIVAGALRGKLANESNESLVNIWNDAVEEV 380 (385)
Q Consensus 350 --i~~~~~~L~~~~~~~~~~~~~~~W~~~~~~l 380 (385)
+..-|++.+-+.. ....+.+.+..++++.
T Consensus 356 ~~l~~eA~~~A~r~~--~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 356 AAICQEAGMQAVRKN--RYVILPKDFEKGYKTV 386 (398)
T ss_pred HHHHHHHHHHHHHcC--CCccCHHHHHHHHHHH
Confidence 2233333221110 0122567777776654
No 115
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=7.7e-05 Score=69.81 Aligned_cols=192 Identities=11% Similarity=0.112 Sum_probs=110.0
Q ss_pred CCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhC-------------CCCCceEEEEEcC---
Q 038663 157 VPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIA-------------PYDKAHVIVAESS--- 219 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------~F~~~~~~wv~vs--- 219 (385)
.+++|.+...+.+...+..+.. +.+.++|+.|+||+++|..+.+..-... .++ ...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP--Dl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP--DLLWVEPTYQH 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC--CEEEEeccccc
Confidence 4578999999999999887764 7899999999999999999988753211 122 22333221
Q ss_pred CHHHHHHHHHHHhcC---ccccccHHHHHHHHHHHHHhc---CCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEe
Q 038663 220 DLRRIQDKIAELLKF---KIEEENELQRRATLAKRLRER---TKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVT 291 (385)
Q Consensus 220 ~~~~l~~~i~~~l~~---~~~~~~~~~~~~~l~~~l~~~---~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 291 (385)
+-..+-..-+...+. .......+ ....+.+.+... +++-++|+|++... ...+.+...+.+..+..-|++|
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~ 160 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIA 160 (314)
T ss_pred cccccchhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 000010111111110 00111112 223444444321 26678899998644 3344443333332333344555
Q ss_pred eCChhhhhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 292 SRRLDVCSKMS--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 292 tr~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
+....+...+. +..+++.+++.++..+.+.+....... ......++..++|.|..+....
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~---~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL---NINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc---hhHHHHHHHHcCCCHHHHHHHH
Confidence 55544444333 889999999999999999987532211 1113568889999997655433
No 116
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.20 E-value=0.00011 Score=73.42 Aligned_cols=193 Identities=17% Similarity=0.207 Sum_probs=126.1
Q ss_pred CCcchHHHHHHHHHHhc----c-CCceEEEEEcCCCCchHHHHHHHHHHhh------hhCCCCCceEEEEEcC-----CH
Q 038663 158 PLESSSKALNSIMKLLK----D-EKVNIIGVQGPGGVGKSTLMEQLAKQID------TIAPYDKAHVIVAESS-----DL 221 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~----~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~------~~~~F~~~~~~wv~vs-----~~ 221 (385)
.+.+|+.|..+|-+++. + +..+.+-|.|.+|+|||..++.|.+.+. ....|. ++.+. ..
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-----yveINgm~l~~~ 471 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-----YVEINGLRLASP 471 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-----EEEEcceeecCH
Confidence 36789999999988875 3 3345899999999999999999998654 223465 33333 88
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHH---hcCCcEEEEEeCCCcchh--hhhhcCCCCC-CCCCeEEEEeeCCh
Q 038663 222 RRIQDKIAELLKFKIEEENELQRRATLAKRLR---ERTKKVLIILDDVREKIN--LAVSGIPYGE-EGNRCKVIVTSRRL 295 (385)
Q Consensus 222 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~---~~~kr~LlVlDdv~~~~~--~~~l~~~~~~-~~~gs~iivTtr~~ 295 (385)
.++...|...+..... ........|..++. ...+.+++++|++..... .+-+...|.+ ..++++++|-+-..
T Consensus 472 ~~~Y~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 472 REIYEKIWEALSGERV--TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 8999999998875322 22233445555554 324778999999754321 1111112222 23466655544222
Q ss_pred -----------hhhhhcCCceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChHHHHHHHHHh
Q 038663 296 -----------DVCSKMSDVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPSAIAIVAGAL 357 (385)
Q Consensus 296 -----------~v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPlai~~~~~~L 357 (385)
.+++.++...+.++|.+.++..++...++... .....+-++++++...|..-.|+...-+..
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 23444556789999999999999999888433 344556677888888888877777665444
No 117
>CHL00176 ftsH cell division protein; Validated
Probab=98.19 E-value=3.2e-05 Score=78.81 Aligned_cols=167 Identities=17% Similarity=0.242 Sum_probs=93.7
Q ss_pred CCCcchHHH---HHHHHHHhccC---------CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHH
Q 038663 157 VPLESSSKA---LNSIMKLLKDE---------KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLR 222 (385)
Q Consensus 157 ~~~~gr~~~---~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~ 222 (385)
.++.|.++. +.++++.+... ..+-+.++||+|+|||+||+.++..... . ++.++ +..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--p-------~i~is~s~f~ 253 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--P-------FFSISGSEFV 253 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-------eeeccHHHHH
Confidence 345565554 44444444422 2457899999999999999999887542 1 22232 211
Q ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------------hhhhhcCCCC--CCCC
Q 038663 223 RIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPYG--EEGN 284 (385)
Q Consensus 223 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~ 284 (385)
.... ..........+...... .+++|+|||++... .+..+...+. ....
T Consensus 254 ~~~~-----------g~~~~~vr~lF~~A~~~--~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 254 EMFV-----------GVGAARVRDLFKKAKEN--SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHhh-----------hhhHHHHHHHHHHHhcC--CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 1110 01111122233333334 78999999996431 1222222221 1234
Q ss_pred CeEEEEeeCChhhhh--hc---C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCC
Q 038663 285 RCKVIVTSRRLDVCS--KM---S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL 346 (385)
Q Consensus 285 gs~iivTtr~~~v~~--~~---~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~Gl 346 (385)
+..||.||....... .. . +..+.+.+.+.++-.++++.++.... .........+++.+.|+
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-LSPDVSLELIARRTPGF 387 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-cchhHHHHHHHhcCCCC
Confidence 566777776644311 11 2 67889999999999999998885431 11123446678888873
No 118
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.16 E-value=1.6e-05 Score=76.76 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=66.9
Q ss_pred CCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHHHHhcC
Q 038663 158 PLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIAELLKF 234 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~~~l~~ 234 (385)
++++.+..++.+...|... +.+.++|++|+|||++|+.+++.......|. .+.|++++ +...++....- .
T Consensus 176 d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~--~v~~VtFHpsySYeDFI~G~rP---~ 248 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQ--RVNMVQFHQSYSYEDFIQGYRP---N 248 (459)
T ss_pred cccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccc--eeeEEeecccccHHHHhcccCC---C
Confidence 4667788889998888753 5788899999999999999999887666677 78888887 43333321100 0
Q ss_pred ccccc-cHHHHHHHHHHHHHhcCCcEEEEEeCCCcc
Q 038663 235 KIEEE-NELQRRATLAKRLRERTKKVLIILDDVREK 269 (385)
Q Consensus 235 ~~~~~-~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~ 269 (385)
..... ......+.+........++++||||++...
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00000 011112222232222237899999998643
No 119
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.13 E-value=1.9e-05 Score=80.03 Aligned_cols=50 Identities=28% Similarity=0.445 Sum_probs=40.6
Q ss_pred CCCCCCcchHHHHHHHHHHhccC-----CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 154 PDYVPLESSSKALNSIMKLLKDE-----KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~~~-----~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
....+++|.++.++++..++... ..+++.|+|++|+||||+++.+.....
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 33456889899999999888642 335799999999999999999998764
No 120
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.13 E-value=1.5e-05 Score=64.66 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=49.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHH-HHHHHHHHhcCccccccHHHHHHHHHHHHHhc
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRR-IQDKIAELLKFKIEEENELQRRATLAKRLRER 255 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~-l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 255 (385)
...+.|+|++|+||||+++.+........ . ..+.+..+ .... ........................+.+..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--G--GVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--C--CEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999998876432 1 34455444 1111 11100111111112222333344555555551
Q ss_pred CCcEEEEEeCCCcch
Q 038663 256 TKKVLIILDDVREKI 270 (385)
Q Consensus 256 ~kr~LlVlDdv~~~~ 270 (385)
+..+|++|++....
T Consensus 78 -~~~viiiDei~~~~ 91 (148)
T smart00382 78 -KPDVLILDEITSLL 91 (148)
T ss_pred -CCCEEEEECCcccC
Confidence 34999999998664
No 121
>PRK10536 hypothetical protein; Provisional
Probab=98.12 E-value=3.7e-05 Score=68.80 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=37.6
Q ss_pred CCCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHH
Q 038663 154 PDYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.+..++.++......++.++.+. .++.+.|++|+|||+||..+..+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHH
Confidence 34455677888888888888764 49999999999999999999885
No 122
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=0.00012 Score=68.90 Aligned_cols=93 Identities=10% Similarity=0.054 Sum_probs=60.1
Q ss_pred CcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChh-hhhh-cC-CceEEcCCCCHHHHHHHHHHhhCCCCCcc
Q 038663 257 KKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLD-VCSK-MS-DVTVQIEELGEEDRLKLFKQIARLPDSEA 331 (385)
Q Consensus 257 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 331 (385)
++-++|||+++.. ...+.+...+.+...++.+|++|.+.. +... .+ +..+.+.+++.+++.+.+....+..
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~---- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES---- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC----
Confidence 4445577999754 445555444444445667777776653 4333 33 7889999999999999998764211
Q ss_pred hHHHHHHHHHHhCCChHHHHHH
Q 038663 332 FEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 332 ~~~~~~~I~~~c~GlPlai~~~ 353 (385)
..+.+..++..++|.|+....+
T Consensus 182 ~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ChHHHHHHHHHcCCCHHHHHHH
Confidence 1234456788999999755433
No 123
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=6.1e-05 Score=72.71 Aligned_cols=159 Identities=17% Similarity=0.293 Sum_probs=100.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERT 256 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 256 (385)
.+..+.+.|++|+|||+||..+..... |+ .+-.++ .+++ -..++.....++...+.+..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FP--FvKiiS---pe~m------------iG~sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FP--FVKIIS---PEDM------------IGLSESAKCAHIKKIFEDAY 595 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CC--eEEEeC---hHHc------------cCccHHHHHHHHHHHHHHhh
Confidence 456788999999999999999998755 77 332221 1111 11222333344444443321
Q ss_pred --CcEEEEEeCCCcchhhhhhcCCC---------------CCCCCCeEEEEeeCChhhhhhcC-----CceEEcCCCCH-
Q 038663 257 --KKVLIILDDVREKINLAVSGIPY---------------GEEGNRCKVIVTSRRLDVCSKMS-----DVTVQIEELGE- 313 (385)
Q Consensus 257 --kr~LlVlDdv~~~~~~~~l~~~~---------------~~~~~gs~iivTtr~~~v~~~~~-----~~~~~l~~L~~- 313 (385)
.--.||+||+....+|..++..| |+.+..--|+-||....+...|+ ...|+++.++.
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 45679999998877776665543 34444556777888888888877 56899999987
Q ss_pred HHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhcC
Q 038663 314 EDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALRG 359 (385)
Q Consensus 314 ~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~ 359 (385)
++..+.++..--- .+.+...++++...+| +-..|+.+-.++..
T Consensus 676 ~~~~~vl~~~n~f-sd~~~~~~~~~~~~~~--~~vgIKklL~lie~ 718 (744)
T KOG0741|consen 676 EQLLEVLEELNIF-SDDEVRAIAEQLLSKK--VNVGIKKLLMLIEM 718 (744)
T ss_pred HHHHHHHHHccCC-CcchhHHHHHHHhccc--cchhHHHHHHHHHH
Confidence 7777777664311 2344556667777777 44455655555544
No 124
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.08 E-value=6.9e-05 Score=73.46 Aligned_cols=149 Identities=13% Similarity=0.189 Sum_probs=83.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCC
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTK 257 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 257 (385)
..-+.|+|++|+|||+|++.+.+..... .. .+++++. ..+...+...+... ....+++.+. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~-~~---~v~yi~~---~~f~~~~~~~l~~~--------~~~~f~~~~~---~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES-GG---KILYVRS---ELFTEHLVSAIRSG--------EMQRFRQFYR---N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc-CC---CEEEeeH---HHHHHHHHHHHhcc--------hHHHHHHHcc---c
Confidence 3568899999999999999999987642 12 3344433 23333444443210 1122333333 3
Q ss_pred cEEEEEeCCCcchh----hhhhcCCCCC-CCCCeEEEEeeCChh---------hhhhcC-CceEEcCCCCHHHHHHHHHH
Q 038663 258 KVLIILDDVREKIN----LAVSGIPYGE-EGNRCKVIVTSRRLD---------VCSKMS-DVTVQIEELGEEDRLKLFKQ 322 (385)
Q Consensus 258 r~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~iivTtr~~~---------v~~~~~-~~~~~l~~L~~~~~~~lf~~ 322 (385)
.-+|+|||+..... ...+...+.. ...|..||+||.... +.+.+. +..+.+.+++.++...++++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 55888999875421 1122111110 012456888885431 223333 57899999999999999998
Q ss_pred hhCCCCCcchHHHHHHHHHHhC
Q 038663 323 IARLPDSEAFEGAAKVIVKACG 344 (385)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c~ 344 (385)
.+......-..++..-|+..+.
T Consensus 283 k~~~~~~~l~~evl~~la~~~~ 304 (445)
T PRK12422 283 KAEALSIRIEETALDFLIEALS 304 (445)
T ss_pred HHHHcCCCCCHHHHHHHHHhcC
Confidence 7732211112344444554444
No 125
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.05 E-value=9.4e-05 Score=73.11 Aligned_cols=174 Identities=16% Similarity=0.120 Sum_probs=92.2
Q ss_pred CCCCcchHHHHHHHHHHh---c-------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHH
Q 038663 156 YVPLESSSKALNSIMKLL---K-------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQ 225 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L---~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~ 225 (385)
+.++-|.+...+.+.... . -...+-+.++||+|+|||.+|+.+.+.... .|- -+..+ .+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~--~~~-----~l~~~---~l~ 296 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL--PLL-----RLDVG---KLF 296 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CEE-----EEEhH---Hhc
Confidence 345667665555444321 1 024567899999999999999999998652 121 11111 111
Q ss_pred HHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh--------------hhhhcCCCCCCCCCeEEEEe
Q 038663 226 DKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKIN--------------LAVSGIPYGEEGNRCKVIVT 291 (385)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~--------------~~~l~~~~~~~~~gs~iivT 291 (385)
. .....+.. ....+.+..+.. .+++|+|||+..... ...+...+.....+..||.|
T Consensus 297 ~--------~~vGese~-~l~~~f~~A~~~-~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 297 G--------GIVGESES-RMRQMIRIAEAL-SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred c--------cccChHHH-HHHHHHHHHHhc-CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 0 11111111 222222222222 789999999863210 01111112222345556777
Q ss_pred eCChhh-hhh---cC--CceEEcCCCCHHHHHHHHHHhhCCC-CCcchHHHHHHHHHHhCCChHH
Q 038663 292 SRRLDV-CSK---MS--DVTVQIEELGEEDRLKLFKQIARLP-DSEAFEGAAKVIVKACGSLPSA 349 (385)
Q Consensus 292 tr~~~v-~~~---~~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~I~~~c~GlPla 349 (385)
|..... ... -+ +..+.++.-+.++-.++|+.++... .......-...+++.+.|+-=|
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGA 431 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGA 431 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHH
Confidence 765542 111 12 6788999999999999999887432 1100012234566777776543
No 126
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.05 E-value=0.00012 Score=68.10 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=98.7
Q ss_pred CCCcchHHHHHHHHHHhccCC---ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHHH
Q 038663 157 VPLESSSKALNSIMKLLKDEK---VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIAE 230 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~L~~~~---~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~~ 230 (385)
..+.+|+..+..+...+.+.. +.++.|+|..|+|||.+.+++.+.... ..+|++.- +.+.++..|+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-------~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-------ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-------cceeeehHHhccHHHHHHHHHH
Confidence 347799999999999887543 245589999999999999999998732 34687776 88889999999
Q ss_pred HhcC-ccccccH----H---HHHHHHHH--HHHhcCCcEEEEEeCCCcchhhhhhc--------CCCCCCCCCeEEEEee
Q 038663 231 LLKF-KIEEENE----L---QRRATLAK--RLRERTKKVLIILDDVREKINLAVSG--------IPYGEEGNRCKVIVTS 292 (385)
Q Consensus 231 ~l~~-~~~~~~~----~---~~~~~l~~--~l~~~~kr~LlVlDdv~~~~~~~~l~--------~~~~~~~~gs~iivTt 292 (385)
+... +.+.... + .....+.+ ...+.++.++||||++....+.+... ... +.+.+ +|+++
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~--~~~~i-~iils 155 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELL--NEPTI-VIILS 155 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHh--CCCce-EEEEe
Confidence 8852 1111111 1 11222222 22232368999999997654433211 111 11223 33333
Q ss_pred CC---hhhhhhcC---CceEEcCCCCHHHHHHHHHHhh
Q 038663 293 RR---LDVCSKMS---DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 293 r~---~~v~~~~~---~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
-. ..-...++ ..++.++..+.++...++.+.-
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 22 22222234 4567888899999998887754
No 127
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00011 Score=72.27 Aligned_cols=149 Identities=18% Similarity=0.269 Sum_probs=86.8
Q ss_pred CCCCcchHHHHHHHHHHhc---c---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHH
Q 038663 156 YVPLESSSKALNSIMKLLK---D---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRR 223 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~ 223 (385)
+.++-|.+..+.+|.+++. . ...+-+.++||+|+|||.||+.+..+..+- |- .++ ..+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f~-------~is-Ape 258 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--FL-------SIS-APE 258 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--eE-------eec-chh
Confidence 4456788888888877663 1 245778999999999999999999988752 32 111 111
Q ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------------hhhhhcCCCCC---CCC
Q 038663 224 IQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPYGE---EGN 284 (385)
Q Consensus 224 l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~---~~~ 284 (385)
|.+ .....+...+.+.+.+.... -+++++|||+.... ++-.....+.. .+.
T Consensus 259 ----ivS----GvSGESEkkiRelF~~A~~~--aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 259 ----IVS----GVSGESEKKIRELFDQAKSN--APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----hhc----ccCcccHHHHHHHHHHHhcc--CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 111 11233334344444444445 89999999986431 11111111111 123
Q ss_pred CeEEEE-eeCChhhhhh---cC--CceEEcCCCCHHHHHHHHHHhh
Q 038663 285 RCKVIV-TSRRLDVCSK---MS--DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 285 gs~iiv-Ttr~~~v~~~---~~--~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
+..||- |+|...+-.. .+ ++-|.|.--++..-.+++...+
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHH
Confidence 333443 4555554222 23 6778888777777777777666
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.02 E-value=7.1e-05 Score=78.30 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=87.2
Q ss_pred CcchHHHHHHHHHHhcc--------C-CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHH
Q 038663 159 LESSSKALNSIMKLLKD--------E-KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIA 229 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~~--------~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~ 229 (385)
++|.+..++.|.+.+.. + ...++.++||+|+|||+||+.+++... . ..+.+..+...+ -..+.
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~--~~~~~d~se~~~-~~~~~ 527 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----V--HLERFDMSEYME-KHTVS 527 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----C--CeEEEeCchhhh-cccHH
Confidence 56777777777776641 1 234689999999999999999998763 1 233444442111 00112
Q ss_pred HHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCC-----------CCCeEEEEeeCChh
Q 038663 230 ELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEE-----------GNRCKVIVTSRRLD 296 (385)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~iivTtr~~~ 296 (385)
..++.+..... .+....+.+.++.. ...+++||+++.. +.++.+...+.++ -.++.||+||....
T Consensus 528 ~lig~~~gyvg-~~~~~~l~~~~~~~-p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~ 605 (731)
T TIGR02639 528 RLIGAPPGYVG-FEQGGLLTEAVRKH-PHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGA 605 (731)
T ss_pred HHhcCCCCCcc-cchhhHHHHHHHhC-CCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcch
Confidence 22222111110 01122344555542 4459999999744 3333333332221 12455788874421
Q ss_pred ----------------------h-----hhhcC--CceEEcCCCCHHHHHHHHHHhh
Q 038663 297 ----------------------V-----CSKMS--DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 297 ----------------------v-----~~~~~--~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
+ +...+ +.++.+.||+.++...++...+
T Consensus 606 ~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 606 SEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred hhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHH
Confidence 0 11122 5789999999999999888765
No 129
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.0029 Score=60.55 Aligned_cols=165 Identities=16% Similarity=0.189 Sum_probs=91.7
Q ss_pred HHHHHHHHHhccCC---------ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcC
Q 038663 164 KALNSIMKLLKDEK---------VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKF 234 (385)
Q Consensus 164 ~~~~~l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~ 234 (385)
.-+++|.+++.+.+ -|-..++||+|+|||++...+++.+. |+ .. -...+
T Consensus 212 ~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~----yd--Iy-dLeLt--------------- 269 (457)
T KOG0743|consen 212 RIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN----YD--IY-DLELT--------------- 269 (457)
T ss_pred HHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC----Cc--eE-Eeeec---------------
Confidence 34555555555321 25688999999999999999999877 65 11 11111
Q ss_pred ccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchhhh--------------------hhcCCC----CCCCCCeEEEE
Q 038663 235 KIEEENELQRRATLAKRLRERTKKVLIILDDVREKINLA--------------------VSGIPY----GEEGNRCKVIV 290 (385)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~~~--------------------~l~~~~----~~~~~gs~iiv 290 (385)
...++. .|++.|.....+-+|||.|++..-+.. .|...+ ..++.---||+
T Consensus 270 --~v~~n~----dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivF 343 (457)
T KOG0743|consen 270 --EVKLDS----DLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVF 343 (457)
T ss_pred --cccCcH----HHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEE
Confidence 000111 133333333367788888886441110 010010 01121223577
Q ss_pred eeCChhh---hhhc-C--CceEEcCCCCHHHHHHHHHHhhCCCC-CcchHHHHHHHHHHhCCChHHHHHHHH-HhcCC
Q 038663 291 TSRRLDV---CSKM-S--DVTVQIEELGEEDRLKLFKQIARLPD-SEAFEGAAKVIVKACGSLPSAIAIVAG-ALRGK 360 (385)
Q Consensus 291 Ttr~~~v---~~~~-~--~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~I~~~c~GlPlai~~~~~-~L~~~ 360 (385)
||....- |-.. + +..+.|..=+.+....|+.+.+|... +. +..+|.+.-.|.-+.=..++. +|..+
T Consensus 344 TTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 344 TTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred ecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 8876653 2222 2 67788999999999999999998753 33 344455555555444444444 44444
No 130
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00013 Score=73.15 Aligned_cols=151 Identities=20% Similarity=0.277 Sum_probs=87.7
Q ss_pred CCcchHHHHHHHHHHhc------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHH
Q 038663 158 PLESSSKALNSIMKLLK------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKI 228 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i 228 (385)
+.+|-++..+.|+++|. .-..+++++|||+|+|||+|++.|++.... .|- . ++++ |..++-.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~R--kfv--R---~sLGGvrDEAEIRG-- 394 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGR--KFV--R---ISLGGVRDEAEIRG-- 394 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCC--CEE--E---EecCccccHHHhcc--
Confidence 46799999999999885 224579999999999999999999998763 353 1 2222 2222210
Q ss_pred HHHhcCccccccHHHHHHHHHHHHHhc-CCcEEEEEeCCCcch---------hhhhhcCC---------CCC---CCCCe
Q 038663 229 AELLKFKIEEENELQRRATLAKRLRER-TKKVLIILDDVREKI---------NLAVSGIP---------YGE---EGNRC 286 (385)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~l~~~l~~~-~kr~LlVlDdv~~~~---------~~~~l~~~---------~~~---~~~gs 286 (385)
+ .-.-...+..++.+.++.. .++-|++||+++... .+-++..| +.+ .-...
T Consensus 395 ------H-RRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 395 ------H-RRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ------c-cccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 0 0000111222333333221 277899999986431 11111111 111 01122
Q ss_pred EEEEeeCChh-hh-hhcC-CceEEcCCCCHHHHHHHHHHhh
Q 038663 287 KVIVTSRRLD-VC-SKMS-DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 287 ~iivTtr~~~-v~-~~~~-~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
..|.|..+-+ ++ ..+. -.++++...+++|-.++-++++
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3344444443 32 2333 6899999999999988888776
No 131
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.99 E-value=7.8e-05 Score=74.92 Aligned_cols=48 Identities=15% Similarity=0.291 Sum_probs=40.1
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+.+++|.+..++.+...+.......+.|+|++|+|||++|+.+++..+
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 445889999999988877766667789999999999999999987643
No 132
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.99 E-value=3.6e-05 Score=75.64 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=109.2
Q ss_pred CCCCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhC--CCCCceEEEEEcCCHHHHHHHHHHH
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIA--PYDKAHVIVAESSDLRRIQDKIAEL 231 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~~~wv~vs~~~~l~~~i~~~ 231 (385)
.+.+++|.+.-...|.+.+..+.. .-....|+.|+||||+|+.+...+--.. ...+ | +.-...+.|...
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP------C--~~C~~Ck~I~~g 85 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP------C--GKCISCKEINEG 85 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc------c--hhhhhhHhhhcC
Confidence 345678999999999998876643 4567889999999999999998754211 1110 0 111111222111
Q ss_pred -----hcCccccccHHHHHHHHHHHHHhc---CCcEEEEEeCCC--cchhhhhhcCCCCCCCCCeEE-EEeeCChhhhhh
Q 038663 232 -----LKFKIEEENELQRRATLAKRLRER---TKKVLIILDDVR--EKINLAVSGIPYGEEGNRCKV-IVTSRRLDVCSK 300 (385)
Q Consensus 232 -----l~~~~~~~~~~~~~~~l~~~l~~~---~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~i-ivTtr~~~v~~~ 300 (385)
+..+......-+..+.|.+.+.-. ++-=+.|||+|+ +...|+.+...+.+...+... +.||-...+...
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 000000001111233344333221 144478899998 456788887776555555554 455555555443
Q ss_pred c-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCCh
Q 038663 301 M-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP 347 (385)
Q Consensus 301 ~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (385)
. . +..|.++.|+.++....+...+.........+....|++..+|..
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCCh
Confidence 3 3 789999999999999999988854422223344555666666633
No 133
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.96 E-value=6.8e-05 Score=70.77 Aligned_cols=100 Identities=20% Similarity=0.253 Sum_probs=66.3
Q ss_pred HHHHHHhcc-CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCccccccH
Q 038663 167 NSIMKLLKD-EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFKIEEENE 241 (385)
Q Consensus 167 ~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~~~~~~~ 241 (385)
..+++.+.. ....-+.|+|++|+|||||++.+.+..... ..+...+|+.+. ...++++.+...+..+......
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~--~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN--HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 446776653 233466999999999999999999987643 211235677776 7888888887766643322221
Q ss_pred ------HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 ------LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 ------~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
......+-+++...+++.+||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 112334445555556999999999853
No 134
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00061 Score=63.68 Aligned_cols=174 Identities=16% Similarity=0.112 Sum_probs=97.0
Q ss_pred HHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCc--------------eEEEEEcCCHHHHHHHH
Q 038663 164 KALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKA--------------HVIVAESSDLRRIQDKI 228 (385)
Q Consensus 164 ~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~--------------~~~wv~vs~~~~l~~~i 228 (385)
...+.+...+..+... .+.++|+.|+||+++|..+.+.+--.....+. ...|+......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~------ 84 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR------ 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc------
Confidence 3456677777666655 58899999999999999998875322111100 11111100000
Q ss_pred HHHhcCc-cccccHHHHHHHHHHHHHhc---CCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCC-hhhhhhc
Q 038663 229 AELLKFK-IEEENELQRRATLAKRLRER---TKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRR-LDVCSKM 301 (385)
Q Consensus 229 ~~~l~~~-~~~~~~~~~~~~l~~~l~~~---~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~~ 301 (385)
-+.. ......+ .+..+.+.+... +++-++|||++... ..-+.+...+.+...++.+|++|.+ ..+...+
T Consensus 85 ---~~~k~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTI 160 (319)
T PRK08769 85 ---TGDKLRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATI 160 (319)
T ss_pred ---ccccccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHH
Confidence 0000 0001111 122333333221 25668999998754 3333443444444456666666654 4444333
Q ss_pred -C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 302 -S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 302 -~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
+ +..+.+.+++.+++.+.+... |.. ...+..++..++|.|+....+
T Consensus 161 rSRCq~i~~~~~~~~~~~~~L~~~-~~~-----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 161 RSRCQRLEFKLPPAHEALAWLLAQ-GVS-----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HhhheEeeCCCcCHHHHHHHHHHc-CCC-----hHHHHHHHHHcCCCHHHHHHH
Confidence 3 788999999999999888754 321 123556889999999866543
No 135
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00051 Score=64.90 Aligned_cols=158 Identities=11% Similarity=0.062 Sum_probs=85.3
Q ss_pred Ccc-hHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHh----
Q 038663 159 LES-SSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELL---- 232 (385)
Q Consensus 159 ~~g-r~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l---- 232 (385)
++| .+..++.|...+..++.. .+.++|+.|+||||+|+.+.+..--..... ... |- .-...+.+...-
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~--~~~--cg--~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNG--VEP--CG--TCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCC--CCC--CC--cCHHHHHHhcCCCCCE
Confidence 455 666777788877766654 568999999999999999988753211111 000 00 000000000000
Q ss_pred ---cCccccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCCh-hhhhhcC-
Q 038663 233 ---KFKIEEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRL-DVCSKMS- 302 (385)
Q Consensus 233 ---~~~~~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~- 302 (385)
.........++ ...+.+.+.. .+.+=++|||++... ...+.+...+.+...++.+|++|.+. .+...+.
T Consensus 81 ~~i~~~~~~i~id~-ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrS 159 (329)
T PRK08058 81 HLVAPDGQSIKKDQ-IRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILS 159 (329)
T ss_pred EEeccccccCCHHH-HHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHh
Confidence 00000011111 1222222221 014557889998744 33445555554445566676666543 3333333
Q ss_pred -CceEEcCCCCHHHHHHHHHHh
Q 038663 303 -DVTVQIEELGEEDRLKLFKQI 323 (385)
Q Consensus 303 -~~~~~l~~L~~~~~~~lf~~~ 323 (385)
+..+++.+++.++....+...
T Consensus 160 Rc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 160 RCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hceeeeCCCCCHHHHHHHHHHc
Confidence 789999999999998888653
No 136
>PHA00729 NTP-binding motif containing protein
Probab=97.93 E-value=0.0003 Score=62.00 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=29.2
Q ss_pred HHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 168 SIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 168 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+++.+...+...|.|+|++|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455555556667899999999999999999998754
No 137
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.93 E-value=0.00022 Score=68.14 Aligned_cols=131 Identities=18% Similarity=0.240 Sum_probs=77.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERT 256 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 256 (385)
....+.|+|+.|+|||.|++.+.+..... .. ....++++ .......++..+.. .-...+++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~--~~--~a~v~y~~-se~f~~~~v~a~~~--------~~~~~Fk~~y-~-- 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN--GP--NARVVYLT-SEDFTNDFVKALRD--------NEMEKFKEKY-S-- 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhh--CC--CceEEecc-HHHHHHHHHHHHHh--------hhHHHHHHhh-c--
Confidence 46789999999999999999999987743 33 22233333 12222222222210 1123344333 2
Q ss_pred CcEEEEEeCCCcch---hhh-hhcCCCCC-CCCCeEEEEeeCChh---------hhhhcC-CceEEcCCCCHHHHHHHHH
Q 038663 257 KKVLIILDDVREKI---NLA-VSGIPYGE-EGNRCKVIVTSRRLD---------VCSKMS-DVTVQIEELGEEDRLKLFK 321 (385)
Q Consensus 257 kr~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~iivTtr~~~---------v~~~~~-~~~~~l~~L~~~~~~~lf~ 321 (385)
-=++++||++-.. .|. .+...|.. ...|-.||+|++... ..+.+. +-++++.|.+.+....+++
T Consensus 176 -~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 176 -LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred -cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 2378899997532 122 12111211 122338999996543 344455 7889999999999999999
Q ss_pred Hhh
Q 038663 322 QIA 324 (385)
Q Consensus 322 ~~~ 324 (385)
+.+
T Consensus 255 kka 257 (408)
T COG0593 255 KKA 257 (408)
T ss_pred HHH
Confidence 976
No 138
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.93 E-value=1e-05 Score=76.04 Aligned_cols=175 Identities=22% Similarity=0.309 Sum_probs=114.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHHHHhcCccccccHHHHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIAELLKFKIEEENELQRRATLAKRLR 253 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 253 (385)
..+-+.++|+||+||||++-++.. ... .|.+ .+..+... +...+...+...++.+ ..+.+.....+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~--~~~~-~v~~vdl~pitD~~~v~~~~ag~~gl~--~~~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AAS--EYAD-GVAFVDLAPITDPALVFPTLAGALGLH--VQPGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhh--hccc-ceeeeeccccCchhHhHHHHHhhcccc--cccchHHHHHHHHHHh
Confidence 357899999999999999999998 443 3663 33333333 6666666666656643 2233344556677777
Q ss_pred hcCCcEEEEEeCCCcchh-hhhhcCCCCCCCCCeEEEEeeCChhhhhhcCCceEEcCCCCHH-HHHHHHHHhhCC---C-
Q 038663 254 ERTKKVLIILDDVREKIN-LAVSGIPYGEEGNRCKVIVTSRRLDVCSKMSDVTVQIEELGEE-DRLKLFKQIARL---P- 327 (385)
Q Consensus 254 ~~~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~---~- 327 (385)
+ ++.++++||..+..+ -..+...+..+...-.++.|+|....... .....+.+|+.. ++.++|...+.. .
T Consensus 87 ~--rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~g--e~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 D--RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAG--EVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred h--hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccc--cccccCCccccCCchhHHHHHHHHHhccce
Confidence 7 999999999876532 11122222223333457778877643221 456677777764 688888776622 2
Q ss_pred -CCcchHHHHHHHHHHhCCChHHHHHHHHHhcCCC
Q 038663 328 -DSEAFEGAAKVIVKACGSLPSAIAIVAGALRGKL 361 (385)
Q Consensus 328 -~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~ 361 (385)
....-...+.+|-++.+|.|++|...++..++-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~ 197 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS 197 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC
Confidence 2233346778899999999999999998887755
No 139
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.014 Score=53.01 Aligned_cols=169 Identities=15% Similarity=0.124 Sum_probs=96.4
Q ss_pred CCcchHHHHHHHHHHhc----------c--CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHH
Q 038663 158 PLESSSKALNSIMKLLK----------D--EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQ 225 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~----------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~ 225 (385)
++-|-+...+.|.+... + ...+-|.++||+|.||+.||+.|..+... .| .+||+..-+-
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS--TF-------FSvSSSDLvS 204 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS--TF-------FSVSSSDLVS 204 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC--ce-------EEeehHHHHH
Confidence 44566666666666442 1 13678999999999999999999987551 12 2344221111
Q ss_pred HHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch---------hhh----hh---cCCCCCCCCCeEEE
Q 038663 226 DKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI---------NLA----VS---GIPYGEEGNRCKVI 289 (385)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~---------~~~----~l---~~~~~~~~~gs~ii 289 (385)
+ .++ ..+.+...|.+.-+.. |+.+|++|++.... .-. ++ ..-..++..|..|+
T Consensus 205 K----WmG------ESEkLVknLFemARe~-kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 205 K----WMG------ESEKLVKNLFEMAREN-KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred H----Hhc------cHHHHHHHHHHHHHhc-CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 1 111 2234556666666654 99999999986431 001 11 11223344566677
Q ss_pred EeeCChhhhhh---cC-CceEEcCCCCHHHHHH-HHHHhhCCCCCcchHHHHHHHHHHhCCCh
Q 038663 290 VTSRRLDVCSK---MS-DVTVQIEELGEEDRLK-LFKQIARLPDSEAFEGAAKVIVKACGSLP 347 (385)
Q Consensus 290 vTtr~~~v~~~---~~-~~~~~l~~L~~~~~~~-lf~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (385)
-.|...-+... .. ...|- -||++..++. +|.-++|.....-.++-.+++.+++.|+.
T Consensus 274 gATNiPw~LDsAIRRRFekRIY-IPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 274 GATNIPWVLDSAIRRRFEKRIY-IPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred ecCCCchhHHHHHHHHhhccee-ccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCC
Confidence 77766544322 11 22222 3566656554 66667776644444556667777887764
No 140
>PRK08181 transposase; Validated
Probab=97.86 E-value=0.00031 Score=64.13 Aligned_cols=78 Identities=23% Similarity=0.260 Sum_probs=45.4
Q ss_pred HHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHH
Q 038663 171 KLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAK 250 (385)
Q Consensus 171 ~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~ 250 (385)
+|+.. ...+.|+|++|+|||.||..+.+..... .+ .+.++.+ .+++..+..... ..+.. .+.+
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~-g~---~v~f~~~---~~L~~~l~~a~~----~~~~~----~~l~ 163 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN-GW---RVLFTRT---TDLVQKLQVARR----ELQLE----SAIA 163 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc-CC---ceeeeeH---HHHHHHHHHHHh----CCcHH----HHHH
Confidence 45542 3568999999999999999999876532 12 3444443 344444432211 11111 2222
Q ss_pred HHHhcCCcEEEEEeCCCc
Q 038663 251 RLRERTKKVLIILDDVRE 268 (385)
Q Consensus 251 ~l~~~~kr~LlVlDdv~~ 268 (385)
.+. +.=||||||+..
T Consensus 164 ~l~---~~dLLIIDDlg~ 178 (269)
T PRK08181 164 KLD---KFDLLILDDLAY 178 (269)
T ss_pred HHh---cCCEEEEecccc
Confidence 333 456999999963
No 141
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.85 E-value=0.00049 Score=72.22 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=91.7
Q ss_pred CCCCCcchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCH
Q 038663 155 DYVPLESSSKALNSIMKLLKD-------------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDL 221 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~ 221 (385)
.+.++.|.+..++.|.+.+.- ...+.+.++|++|+|||+||+.+++.... .| +.+..+
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~--~~-----i~i~~~-- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA--YF-----ISINGP-- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC--eE-----EEEecH--
Confidence 344577998888888776531 23467899999999999999999987642 12 112211
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-------------hhhhhcCCCCC--CCCCe
Q 038663 222 RRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI-------------NLAVSGIPYGE--EGNRC 286 (385)
Q Consensus 222 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-------------~~~~l~~~~~~--~~~gs 286 (385)
++.. . ........+...+...... .+.+|+|||+.... ....+...+.. .....
T Consensus 247 -~i~~----~----~~g~~~~~l~~lf~~a~~~--~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 -EIMS----K----YYGESEERLREIFKEAEEN--APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred -HHhc----c----cccHHHHHHHHHHHHHHhc--CCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 1110 0 0111111222222223333 67899999985421 01112111111 11223
Q ss_pred EEEEeeCChh-hhhh---cC--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChH
Q 038663 287 KVIVTSRRLD-VCSK---MS--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPS 348 (385)
Q Consensus 287 ~iivTtr~~~-v~~~---~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPl 348 (385)
.||.||.... +... .+ ...+.+...+.++-.++++.......... ......+++.+.|+.-
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~-d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE-DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc-ccCHHHHHHhCCCCCH
Confidence 3443554432 2111 11 56788888899998888886653221100 1123557778888753
No 142
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.85 E-value=0.00019 Score=75.56 Aligned_cols=151 Identities=20% Similarity=0.249 Sum_probs=81.7
Q ss_pred CcchHHHHHHHHHHhc------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHH
Q 038663 159 LESSSKALNSIMKLLK------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIA 229 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~ 229 (385)
++|.++..+.|.+++. ..+..++.++||+|+|||++|+.+.+.... .|. -++.+ +..++..
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~--~~~-----~i~~~~~~~~~~i~g--- 391 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR--KFV-----RFSLGGVRDEAEIRG--- 391 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC--CeE-----EEeCCCcccHHHHcC---
Confidence 6788888888887663 123458999999999999999999998752 232 11222 2222111
Q ss_pred HHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh---------hhhhcC-----CCCCC-------CCCeEE
Q 038663 230 ELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKIN---------LAVSGI-----PYGEE-------GNRCKV 288 (385)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~---------~~~l~~-----~~~~~-------~~gs~i 288 (385)
. ...........+...+... .. ++-+|+||+++.... +-.+.. .|.+. ..+..+
T Consensus 392 -~-~~~~~g~~~g~i~~~l~~~-~~--~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 392 -H-RRTYVGAMPGRIIQGLKKA-KT--KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred -C-CCceeCCCCchHHHHHHHh-Cc--CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 0 0000111111222222222 12 344789999864411 111111 11111 123445
Q ss_pred EEeeCChh-h-hhhcC-CceEEcCCCCHHHHHHHHHHhh
Q 038663 289 IVTSRRLD-V-CSKMS-DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 289 ivTtr~~~-v-~~~~~-~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
|.||.... + ..... ..++++.+++.++-..++.+.+
T Consensus 467 I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 66665543 2 22223 5689999999999888887653
No 143
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.84 E-value=0.00071 Score=61.82 Aligned_cols=151 Identities=14% Similarity=0.177 Sum_probs=76.5
Q ss_pred HHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHHH------------
Q 038663 164 KALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKIA------------ 229 (385)
Q Consensus 164 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i~------------ 229 (385)
.-++.+..++..+ ..+.|.|++|+|||+||+.+.+... .. ...+.+-+ +..+++....
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg----~~--~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~ 80 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD----RP--VMLINGDAELTTSDLVGSYAGYTRKKVHDQFI 80 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC----CC--EEEEeCCccCCHHHHhhhhcccchhhHHHHHH
Confidence 3445555555543 4667999999999999999997543 22 22222222 3333332110
Q ss_pred HHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCC-------CC---------CCCCeEEEEe
Q 038663 230 ELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPY-------GE---------EGNRCKVIVT 291 (385)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~-------~~---------~~~gs~iivT 291 (385)
.............-....+....+ +...+++|++... +.+..|...+ ++ ...+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~~~g~l~~A~~---~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaT 157 (262)
T TIGR02640 81 HNVVKLEDIVRQNWVDNRLTLAVR---EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFT 157 (262)
T ss_pred HHhhhhhcccceeecCchHHHHHH---cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEe
Confidence 000000000000000011222222 3568999999754 2222221111 11 1136689999
Q ss_pred eCChhh-------hhhcC-CceEEcCCCCHHHHHHHHHHhhC
Q 038663 292 SRRLDV-------CSKMS-DVTVQIEELGEEDRLKLFKQIAR 325 (385)
Q Consensus 292 tr~~~v-------~~~~~-~~~~~l~~L~~~~~~~lf~~~~~ 325 (385)
+....- ..... ...+.+...+.++-.+++.++.+
T Consensus 158 sN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~~ 199 (262)
T TIGR02640 158 SNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKTD 199 (262)
T ss_pred eCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhhC
Confidence 886421 11112 45678888888888888888764
No 144
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.84 E-value=0.00043 Score=61.65 Aligned_cols=141 Identities=16% Similarity=0.224 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHH-hcCccccccHHH----HHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAEL-LKFKIEEENELQ----RRATLAKRLR 253 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~-l~~~~~~~~~~~----~~~~l~~~l~ 253 (385)
-.++|+|++|+|||||+..+..... ..|. .+++++-......-+-+... +.........+. ....+.+...
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~--~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFD--HIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCC--EEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 3678999999999999999998766 3587 77776554222222222111 111001111111 1122333332
Q ss_pred ----h-cCCcEEEEEeCCCcchhhhh-hcCCCCCC-CCCeEEEEeeCChh-hhhhcC---CceEEcCCCCHHHHHHHHHH
Q 038663 254 ----E-RTKKVLIILDDVREKINLAV-SGIPYGEE-GNRCKVIVTSRRLD-VCSKMS---DVTVQIEELGEEDRLKLFKQ 322 (385)
Q Consensus 254 ----~-~~kr~LlVlDdv~~~~~~~~-l~~~~~~~-~~gs~iivTtr~~~-v~~~~~---~~~~~l~~L~~~~~~~lf~~ 322 (385)
+ ...+.|||+||+-....-.. +..-+..+ ..+..+|++++... +..... ...+-+ ..+..+...++..
T Consensus 90 k~~~~k~~~~~LiIlDD~~~~~~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~-~~s~~dl~~i~~~ 168 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGDKKLKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIF-NNSKRDLENIYRN 168 (241)
T ss_pred hhcccCCCCCeEEEEeCCCCchhhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEe-cCcHHHHHHHHHh
Confidence 2 01389999999965211111 21112122 23556677776543 222222 444434 4676666555555
Q ss_pred hh
Q 038663 323 IA 324 (385)
Q Consensus 323 ~~ 324 (385)
..
T Consensus 169 ~~ 170 (241)
T PF04665_consen 169 MN 170 (241)
T ss_pred cc
Confidence 44
No 145
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.84 E-value=0.0022 Score=61.29 Aligned_cols=188 Identities=17% Similarity=0.258 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHhccCCceEEEEEcCCCCchHHHH-HHHHHHhhhhCCCCCceEEEEEcC------CHHHHHHHHHHHhcC
Q 038663 162 SSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLM-EQLAKQIDTIAPYDKAHVIVAESS------DLRRIQDKIAELLKF 234 (385)
Q Consensus 162 r~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~~~wv~vs------~~~~l~~~i~~~l~~ 234 (385)
|.+..+.|..||....-..|.|.||.|+||+.|+ .++.++-+ .+..+... +-..++..++.++|.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~--------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK--------NVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC--------CEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 5567899999999888889999999999999999 66665432 23333322 334455555555543
Q ss_pred ------------------------ccc--cccHHHHHH-------HHHH-------------------HHHhc-CCcEEE
Q 038663 235 ------------------------KIE--EENELQRRA-------TLAK-------------------RLRER-TKKVLI 261 (385)
Q Consensus 235 ------------------------~~~--~~~~~~~~~-------~l~~-------------------~l~~~-~kr~Ll 261 (385)
..+ +..+.++.. .|++ +|+.. ..+-+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 000 111111111 1111 11111 136789
Q ss_pred EEeCCCcc-----------hhhhhhcCCCCCCCCCeEEEEeeCChhh----hhhcC---CceEEcCCCCHHHHHHHHHHh
Q 038663 262 ILDDVREK-----------INLAVSGIPYGEEGNRCKVIVTSRRLDV----CSKMS---DVTVQIEELGEEDRLKLFKQI 323 (385)
Q Consensus 262 VlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtr~~~v----~~~~~---~~~~~l~~L~~~~~~~lf~~~ 323 (385)
|||+.... .+|..... .++-.+||++|-+... ...+. .+.+.|.-.+.+.+..+...+
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 99997533 24543211 2234568887766544 33343 678899999999999999998
Q ss_pred hCCC-CC-------------------cchHHHHHHHHHHhCCChHHHHHHHHHhcCCC
Q 038663 324 ARLP-DS-------------------EAFEGAAKVIVKACGSLPSAIAIVAGALRGKL 361 (385)
Q Consensus 324 ~~~~-~~-------------------~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~ 361 (385)
++.. .. .....-....+...||=-.-+..+++.++.-.
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe 286 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGE 286 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCC
Confidence 8543 10 12334455678889999999999999988855
No 146
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.84 E-value=0.0001 Score=77.05 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=86.6
Q ss_pred CCcchHHHHHHHHHHhcc------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHH
Q 038663 158 PLESSSKALNSIMKLLKD------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAEL 231 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~ 231 (385)
.++|.++..+.|.++|.. ....++.++||+|+||||+++.+...... .|. ..-+-.+.+...+...-...
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~--~~~--~i~~~~~~d~~~i~g~~~~~ 398 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR--KYV--RMALGGVRDEAEIRGHRRTY 398 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC--CEE--EEEcCCCCCHHHhccchhcc
Confidence 378999999999988752 24568999999999999999999987652 232 11111111332221111000
Q ss_pred hcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh------hhhhcCCCCC---------------CCCCeEEEE
Q 038663 232 LKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKIN------LAVSGIPYGE---------------EGNRCKVIV 290 (385)
Q Consensus 232 l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~------~~~l~~~~~~---------------~~~gs~iiv 290 (385)
.+ .....+...+... .. ..-+++||+++.... ...+...+.+ .-.+..+|.
T Consensus 399 ~g-----~~~G~~~~~l~~~-~~--~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~ 470 (784)
T PRK10787 399 IG-----SMPGKLIQKMAKV-GV--KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVA 470 (784)
T ss_pred CC-----CCCcHHHHHHHhc-CC--CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEE
Confidence 00 1111122222211 11 345789999864311 1222221111 113455666
Q ss_pred eeCChhhhhh-cC-CceEEcCCCCHHHHHHHHHHhh
Q 038663 291 TSRRLDVCSK-MS-DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 291 Ttr~~~v~~~-~~-~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
|+....+... ++ ..++.+.+++.++-.++.++++
T Consensus 471 TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 471 TSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 7765544332 22 6789999999999988887766
No 147
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.83 E-value=0.00057 Score=71.76 Aligned_cols=169 Identities=15% Similarity=0.184 Sum_probs=93.3
Q ss_pred CCCCcchHHHHHHHHHHhc-------------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHH
Q 038663 156 YVPLESSSKALNSIMKLLK-------------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLR 222 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~ 222 (385)
...+.|.+...+.|.+.+. -...+-+.++|++|+|||+||+.+++.... +|- .+. ..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--~fi-------~v~-~~ 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--NFI-------AVR-GP 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CEE-------EEe-hH
Confidence 3445677766666665542 123456899999999999999999998652 221 111 11
Q ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch--------------hhhhhcCCCCC--CCCCe
Q 038663 223 RIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI--------------NLAVSGIPYGE--EGNRC 286 (385)
Q Consensus 223 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~--------------~~~~l~~~~~~--~~~gs 286 (385)
+++ .. ....+. .....+.+..+.. .+.+|+||++.... ....+...+.. ...+.
T Consensus 522 ~l~----~~----~vGese-~~i~~~f~~A~~~-~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 EIL----SK----WVGESE-KAIREIFRKARQA-APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred HHh----hc----ccCcHH-HHHHHHHHHHHhc-CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 111 11 111111 2223333333332 67999999985321 01112111211 22355
Q ss_pred EEEEeeCChhhhh--hc---C-CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChH
Q 038663 287 KVIVTSRRLDVCS--KM---S-DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPS 348 (385)
Q Consensus 287 ~iivTtr~~~v~~--~~---~-~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPl 348 (385)
.||.||....... .+ . +..+.+++.+.++-.++|+...... ...++ ..+++.|.|+-=
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~sg 658 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYTG 658 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCCH
Confidence 6777776554321 11 2 6788999999999999998766332 12222 446677777653
No 148
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.0038 Score=58.41 Aligned_cols=166 Identities=10% Similarity=0.083 Sum_probs=96.1
Q ss_pred HHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCc----------------eEEEEEcCCHHHHHHH
Q 038663 165 ALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKA----------------HVIVAESSDLRRIQDK 227 (385)
Q Consensus 165 ~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~----------------~~~wv~vs~~~~l~~~ 227 (385)
..+.+...+..++. ..+.++|+.|+||+++|..+.+..--.+.-... ...|+....
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~------- 83 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK------- 83 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-------
Confidence 44566666655554 478899999999999999998865321100000 011111000
Q ss_pred HHHHhcCccccccHHHHHHHHHHHHHhc---CCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCCh-hhhhhc
Q 038663 228 IAELLKFKIEEENELQRRATLAKRLRER---TKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRL-DVCSKM 301 (385)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~l~~~l~~~---~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~ 301 (385)
.......++. ..+.+.+... ++.=++|||++... ...+.+...+.+...++.+|++|.+. .+...+
T Consensus 84 -------~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 84 -------EGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred -------CCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 0001112222 2333333211 14568889998754 44555555555555566666666554 444433
Q ss_pred -C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 302 -S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 302 -~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
+ +..+.+.+++.++..+.+... |.. ....++..++|.|+....+
T Consensus 156 ~SRCq~~~~~~~~~~~~~~~L~~~-~~~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 156 VSRCQQWVVTPPSTAQAMQWLKGQ-GIT-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HhcceeEeCCCCCHHHHHHHHHHc-CCc-------hHHHHHHHcCCCHHHHHHH
Confidence 3 789999999999999988764 221 1346788999999977554
No 149
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00025 Score=70.87 Aligned_cols=151 Identities=18% Similarity=0.194 Sum_probs=86.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhc
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKIAELLKFKIEEENELQRRATLAKRLRER 255 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 255 (385)
...|.|.|+.|+|||+|++.+++.... ++.- .+..++.+ .... +..|-.- +...+.+.+.-
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k-~~~~--hv~~v~Cs~l~~~~-~e~iQk~------------l~~vfse~~~~- 493 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSK-DLIA--HVEIVSCSTLDGSS-LEKIQKF------------LNNVFSEALWY- 493 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcc-ccce--EEEEEechhccchh-HHHHHHH------------HHHHHHHHHhh-
Confidence 457899999999999999999998773 3333 44455555 2111 1111111 12333445555
Q ss_pred CCcEEEEEeCCCcch--------hhh-----------hhcCCCCCCCCCeEEEEeeCChhhhh-hc----C-CceEEcCC
Q 038663 256 TKKVLIILDDVREKI--------NLA-----------VSGIPYGEEGNRCKVIVTSRRLDVCS-KM----S-DVTVQIEE 310 (385)
Q Consensus 256 ~kr~LlVlDdv~~~~--------~~~-----------~l~~~~~~~~~gs~iivTtr~~~v~~-~~----~-~~~~~l~~ 310 (385)
.+-+|||||++... +|. .+...+...+....+|.|.....-.+ .+ - .....|++
T Consensus 494 -~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 494 -APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred -CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 79999999986321 111 11112222223334566665543211 11 1 56789999
Q ss_pred CCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCC
Q 038663 311 LGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL 346 (385)
Q Consensus 311 L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~Gl 346 (385)
+...+-.++++............+...-+..+|+|+
T Consensus 573 p~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGY 608 (952)
T ss_pred cchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCc
Confidence 999998888887764442222223334477888886
No 150
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.80 E-value=0.001 Score=59.46 Aligned_cols=209 Identities=12% Similarity=0.121 Sum_probs=119.2
Q ss_pred CCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhh----hCCCCCceEEEEEcC--------------
Q 038663 158 PLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDT----IAPYDKAHVIVAESS-------------- 219 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~F~~~~~~wv~vs-------------- 219 (385)
.+.++++....+......++.+...++||+|.||-|.+..+.+++-. +-.-+ ..-|.+-+
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~--~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE--TRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeee--eEEEecCCCceEEEEEecccce
Confidence 35566777777777666677899999999999999888777766421 00122 33343333
Q ss_pred ----------CHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcE-EEEEeCCCcc--hhhhhhcCCCCCCCCCe
Q 038663 220 ----------DLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKV-LIILDDVREK--INLAVSGIPYGEEGNRC 286 (385)
Q Consensus 220 ----------~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~~~gs 286 (385)
.-+-+.++++.+...... .....++.| ++|+-++.+. +....+...+..-.+.+
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~q-------------ie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQ-------------IETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcc-------------hhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 111223333333221100 000111344 3555555432 33344444333334567
Q ss_pred EEEEeeCChh--hhhhcC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhcCCC--
Q 038663 287 KVIVTSRRLD--VCSKMS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALRGKL-- 361 (385)
Q Consensus 287 ~iivTtr~~~--v~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~-- 361 (385)
|+|+...+-+ +..... +-.+++...+++|....+.+.+....-..-.+++++|+++|+|.---...+-..++-+.
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~ 238 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEP 238 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcccc
Confidence 8777655433 222223 66789999999999999999884442222268899999999998665555555544332
Q ss_pred CC-CcchhhhhhHHHHHHHHH
Q 038663 362 AN-ESNESLVNIWNDAVEEVI 381 (385)
Q Consensus 362 ~~-~~~~~~~~~W~~~~~~l~ 381 (385)
.+ .+.++..-+|+-++.++-
T Consensus 239 ~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 239 FTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred ccccCCCCCCccHHHHHHHHH
Confidence 11 112334668998887653
No 151
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.79 E-value=0.00042 Score=58.44 Aligned_cols=137 Identities=16% Similarity=0.186 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHhccCCce-EEEEEcCCCCchHHHHHHHHHHhhhhCCCCC----------------ceEEEEEcCCHHH
Q 038663 161 SSSKALNSIMKLLKDEKVN-IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDK----------------AHVIVAESSDLRR 223 (385)
Q Consensus 161 gr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~----------------~~~~wv~vs~~~~ 223 (385)
|.++..+.|.+.+..+... .+.++|+.|+||+++|..+.+..-....... ....|+.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK-- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS--
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc--
Confidence 4566777788888777665 5799999999999999999987543322210 01222221100
Q ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHhc---CCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChh-h
Q 038663 224 IQDKIAELLKFKIEEENELQRRATLAKRLRER---TKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLD-V 297 (385)
Q Consensus 224 l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~---~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~-v 297 (385)
......++ ...+.+.+... ++.=++||||++.. .....+...+.+...++.+|++|.+.. +
T Consensus 79 ------------~~~i~i~~-ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 79 ------------KKSIKIDQ-IREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKI 145 (162)
T ss_dssp ------------SSSBSHHH-HHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS
T ss_pred ------------cchhhHHH-HHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHC
Confidence 00111111 12333333211 15668999999854 455666555555556788888887665 3
Q ss_pred hh-hcC-CceEEcCCCC
Q 038663 298 CS-KMS-DVTVQIEELG 312 (385)
Q Consensus 298 ~~-~~~-~~~~~l~~L~ 312 (385)
.. ... ...+.+.+|+
T Consensus 146 l~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 146 LPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -HHHHTTSEEEEE----
T ss_pred hHHHHhhceEEecCCCC
Confidence 32 333 6778887764
No 152
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.78 E-value=0.0011 Score=62.33 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=25.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
..+..+.|+||+|+|||.+|+.++++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 35678999999999999999999999764
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.78 E-value=0.00033 Score=74.12 Aligned_cols=193 Identities=16% Similarity=0.182 Sum_probs=102.5
Q ss_pred CCcchHHHHHHHHHHhc-------c--CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHH
Q 038663 158 PLESSSKALNSIMKLLK-------D--EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKI 228 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~-------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i 228 (385)
.++|.+..++.+.+.+. + ....++.++||+|+|||.||+.+.+.+-.. .. ..+-+.++...+ -..+
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~--~~~~~dmse~~~-~~~~ 641 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQ--NLITINMSEFQE-AHTV 641 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--Cc--ceEEEeHHHhhh-hhhh
Confidence 46788888888888763 1 123578999999999999999998876422 11 112222221110 1111
Q ss_pred HHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCC-----------CCCeEEEEeeCCh
Q 038663 229 AELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEE-----------GNRCKVIVTSRRL 295 (385)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~iivTtr~~ 295 (385)
..-++.+...... .....|.+.++.. ...+|+||++... ..++.+...+.++ ..++-||+||...
T Consensus 642 ~~l~g~~~gyvg~-~~~g~L~~~v~~~-p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg 719 (852)
T TIGR03345 642 SRLKGSPPGYVGY-GEGGVLTEAVRRK-PYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAG 719 (852)
T ss_pred ccccCCCCCcccc-cccchHHHHHHhC-CCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCc
Confidence 1122221111110 0112234445442 5679999999743 3333333222222 1456788887531
Q ss_pred h----------------------h---------hhhcC-CceEEcCCCCHHHHHHHHHHhhCC---------C-CCcchH
Q 038663 296 D----------------------V---------CSKMS-DVTVQIEELGEEDRLKLFKQIARL---------P-DSEAFE 333 (385)
Q Consensus 296 ~----------------------v---------~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~---------~-~~~~~~ 333 (385)
. + +..++ ..++.+.||+.++...++...+.. . .-.-..
T Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d 799 (852)
T TIGR03345 720 SDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSE 799 (852)
T ss_pred hHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECH
Confidence 1 0 11122 347889999999999888775521 1 011223
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHh
Q 038663 334 GAAKVIVKACGSLPSAIAIVAGAL 357 (385)
Q Consensus 334 ~~~~~I~~~c~GlPlai~~~~~~L 357 (385)
++...|++.|.+-.....-+-+.+
T Consensus 800 ~a~~~La~~g~~~~~GAR~L~r~I 823 (852)
T TIGR03345 800 ALVEHIVARCTEVESGARNIDAIL 823 (852)
T ss_pred HHHHHHHHHcCCCCCChHHHHHHH
Confidence 455567777766444444444443
No 154
>PRK08118 topology modulation protein; Reviewed
Probab=97.78 E-value=2.3e-05 Score=66.44 Aligned_cols=35 Identities=34% Similarity=0.471 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhh-CCCCCceEEE
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTI-APYDKAHVIV 215 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~~~w 215 (385)
+.|.|+|++|+||||||+.+++..... -+|+ ..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD--~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLD--ALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecc--hhhc
Confidence 358999999999999999999987643 3455 4443
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.77 E-value=0.00016 Score=76.89 Aligned_cols=160 Identities=17% Similarity=0.222 Sum_probs=88.0
Q ss_pred CCcchHHHHHHHHHHhcc------C---CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHH
Q 038663 158 PLESSSKALNSIMKLLKD------E---KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKI 228 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~------~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i 228 (385)
.++|.+..++.+.+.+.. + ...++.++|++|+|||++|+.+....... -. ..+.+..+.... -...
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~--~~i~~d~s~~~~-~~~~ 640 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--ED--AMVRIDMSEYME-KHSV 640 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CC--cEEEEechhhcc-cchH
Confidence 477888888888887752 1 23578899999999999999999875422 11 223333331111 0011
Q ss_pred HHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCC-----------CCCeEEEEeeCCh
Q 038663 229 AELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEE-----------GNRCKVIVTSRRL 295 (385)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~iivTtr~~ 295 (385)
...++.+..... ......+.+.++.. ...+|+||++... ..+..+...+.++ -.++-||+||...
T Consensus 641 ~~l~g~~~g~~g-~~~~g~l~~~v~~~-p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g 718 (852)
T TIGR03346 641 ARLIGAPPGYVG-YEEGGQLTEAVRRK-PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG 718 (852)
T ss_pred HHhcCCCCCccC-cccccHHHHHHHcC-CCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcc
Confidence 111222111000 00112344444441 3458999999754 3444443333221 1345588888762
Q ss_pred h----------------------h-----hhhcC--CceEEcCCCCHHHHHHHHHHhh
Q 038663 296 D----------------------V-----CSKMS--DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 296 ~----------------------v-----~~~~~--~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
. + ...++ +.++.+.||+.++..+++....
T Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L 776 (852)
T TIGR03346 719 SQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQL 776 (852)
T ss_pred hHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHH
Confidence 1 0 11122 4678889999988888776654
No 156
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0031 Score=63.46 Aligned_cols=151 Identities=15% Similarity=0.242 Sum_probs=85.2
Q ss_pred CCcchHHHHHHHHHHhc------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHH
Q 038663 158 PLESSSKALNSIMKLLK------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKI 228 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i 228 (385)
+.+|.++..+.|.+++. +-+.++++.+||+|+|||++++.|+..+.- .|- -++++ +..+|-.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR--kFf-----RfSvGG~tDvAeIkG-- 482 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR--KFF-----RFSVGGMTDVAEIKG-- 482 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC--ceE-----EEeccccccHHhhcc--
Confidence 46899999999999884 336789999999999999999999998763 243 12333 3222210
Q ss_pred HHHhcCccccccHHHHHHHHHHHHHhc-CCcEEEEEeCCCcch---------hhhhhcCCCCCC---------C-CCeEE
Q 038663 229 AELLKFKIEEENELQRRATLAKRLRER-TKKVLIILDDVREKI---------NLAVSGIPYGEE---------G-NRCKV 288 (385)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~l~~~l~~~-~kr~LlVlDdv~~~~---------~~~~l~~~~~~~---------~-~gs~i 288 (385)
+ ...-......++.+.|+.- ..+-|+.||+|.... .+-++..|-.+. . .=|+|
T Consensus 483 ------H-RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 483 ------H-RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ------c-ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 0 0001112223344444322 156788899986442 122222221110 0 12444
Q ss_pred EE-eeCC-h-hhhhh-cC-CceEEcCCCCHHHHHHHHHHhh
Q 038663 289 IV-TSRR-L-DVCSK-MS-DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 289 iv-Ttr~-~-~v~~~-~~-~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
++ .|-| - .+... .. -.+|+|.+...+|-..+-.+++
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 33 3322 1 12222 22 5789999999888777776655
No 157
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.74 E-value=0.00036 Score=74.05 Aligned_cols=160 Identities=18% Similarity=0.208 Sum_probs=85.4
Q ss_pred CCcchHHHHHHHHHHhcc--------C-CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHH
Q 038663 158 PLESSSKALNSIMKLLKD--------E-KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKI 228 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~--------~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i 228 (385)
.++|.+..++.+...+.. + ...++.++|++|+|||+||+.+.+..-.. -. ..+.+..+...+- ..+
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~--~~i~id~se~~~~-~~~ 643 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DD--AMVRIDMSEFMEK-HSV 643 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CC--cEEEEEhHHhhhh-hhH
Confidence 367888888887777641 1 12478899999999999999999875321 11 2233333321110 011
Q ss_pred HHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCC-----------CCCeEEEEeeCCh
Q 038663 229 AELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEE-----------GNRCKVIVTSRRL 295 (385)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~iivTtr~~ 295 (385)
...++.+...... .....+.+.++.. ..-+|+|||+... ..+..+...+.++ ..++.||+||...
T Consensus 644 ~~LiG~~pgy~g~-~~~g~l~~~v~~~-p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g 721 (857)
T PRK10865 644 SRLVGAPPGYVGY-EEGGYLTEAVRRR-PYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLG 721 (857)
T ss_pred HHHhCCCCccccc-chhHHHHHHHHhC-CCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcc
Confidence 1122222111110 0112344444441 3368999999743 3444333322211 1234478888752
Q ss_pred h--h-------------------------hhhcC--CceEEcCCCCHHHHHHHHHHhh
Q 038663 296 D--V-------------------------CSKMS--DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 296 ~--v-------------------------~~~~~--~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
. + ...++ +.++.+.||+.++...++...+
T Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L 779 (857)
T PRK10865 722 SDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQL 779 (857)
T ss_pred hHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHH
Confidence 1 0 01122 4678889999988877766544
No 158
>PRK08116 hypothetical protein; Validated
Probab=97.74 E-value=0.00011 Score=67.33 Aligned_cols=102 Identities=21% Similarity=0.163 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCc
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKK 258 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr 258 (385)
..+.|+|++|+|||.||..+++..... -. .++++++ .+++..+........ ..+ ...+.+.+.+ -.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~--~v~~~~~---~~ll~~i~~~~~~~~-~~~----~~~~~~~l~~--~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GV--PVIFVNF---PQLLNRIKSTYKSSG-KED----ENEIIRSLVN--AD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CC--eEEEEEH---HHHHHHHHHHHhccc-ccc----HHHHHHHhcC--CC
Confidence 458899999999999999999997643 12 4455543 344444444332111 011 1223344444 33
Q ss_pred EEEEEeCCCc--chhhhh--hcCCCCC-CCCCeEEEEeeCCh
Q 038663 259 VLIILDDVRE--KINLAV--SGIPYGE-EGNRCKVIVTSRRL 295 (385)
Q Consensus 259 ~LlVlDdv~~--~~~~~~--l~~~~~~-~~~gs~iivTtr~~ 295 (385)
||||||+.. ..+|.. +...+.. -..+..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 899999942 333432 2111111 12355689998754
No 159
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.73 E-value=0.00036 Score=69.49 Aligned_cols=187 Identities=17% Similarity=0.234 Sum_probs=98.3
Q ss_pred CcchHHHHHHHHHHhcc-----CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCH---HHHHHHHHH
Q 038663 159 LESSSKALNSIMKLLKD-----EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDL---RRIQDKIAE 230 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~---~~l~~~i~~ 230 (385)
+.-..+.++++..||.. ...+++.+.||+|+||||.++.++++.. |+ ..-|.+..+. ..--.+...
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~--v~Ew~np~~~~~~~~~~~d~~s 94 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FE--VQEWINPVSFRESDNQEDDFES 94 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----Ce--eEEecCCCCccccccccccccc
Confidence 44445678888888863 2357999999999999999999999876 66 7777644310 000000000
Q ss_pred HhcCccccccHHHHHHHHHHH---------HH--h---cCCcEEEEEeCCCcc-----hhhhhhcCCCCC-CCC-CeEEE
Q 038663 231 LLKFKIEEENELQRRATLAKR---------LR--E---RTKKVLIILDDVREK-----INLAVSGIPYGE-EGN-RCKVI 289 (385)
Q Consensus 231 ~l~~~~~~~~~~~~~~~l~~~---------l~--~---~~kr~LlVlDdv~~~-----~~~~~l~~~~~~-~~~-gs~ii 289 (385)
... . ...-......+.++ +. + ..++-+|+++|+-+. ..+..+...+.. ... ...+|
T Consensus 95 ~~~-~--~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~PlV~i 171 (519)
T PF03215_consen 95 DFN-K--FDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRCLPLVFI 171 (519)
T ss_pred ccc-c--cccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcCCCCCEEEE
Confidence 000 0 00000011111111 11 0 015667888887543 122221111111 122 44556
Q ss_pred Ee---eCC-----------------hhhhhhcCCceEEcCCCCHHHHHHHHHHhhC--------CCCCcchHHHHHHHHH
Q 038663 290 VT---SRR-----------------LDVCSKMSDVTVQIEELGEEDRLKLFKQIAR--------LPDSEAFEGAAKVIVK 341 (385)
Q Consensus 290 vT---tr~-----------------~~v~~~~~~~~~~l~~L~~~~~~~lf~~~~~--------~~~~~~~~~~~~~I~~ 341 (385)
+| +.. +++....+...+.+.|....-....+.+.+. ....+....+.+.|++
T Consensus 172 iSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~ 251 (519)
T PF03215_consen 172 ISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAE 251 (519)
T ss_pred EecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHH
Confidence 66 111 0111111267899999999877777776551 1133444566788998
Q ss_pred Hh-CCChHHHHHHH
Q 038663 342 AC-GSLPSAIAIVA 354 (385)
Q Consensus 342 ~c-~GlPlai~~~~ 354 (385)
.| |.+--||..+=
T Consensus 252 ~s~GDIRsAIn~LQ 265 (519)
T PF03215_consen 252 SSNGDIRSAINNLQ 265 (519)
T ss_pred hcCchHHHHHHHHH
Confidence 88 66777776554
No 160
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.70 E-value=0.00081 Score=61.80 Aligned_cols=165 Identities=19% Similarity=0.258 Sum_probs=97.9
Q ss_pred CCCCcchHHHHHHHHHHhc----cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHH
Q 038663 156 YVPLESSSKALNSIMKLLK----DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDK 227 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~ 227 (385)
..+++|-.++-.++-.++. .+....+.|+||.|+|||+|......+.+. |.. ..+-+... .-+-.++.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~---~~E-~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE---NGE-NFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh---cCC-eEEEEEECccchhhHHHHHH
Confidence 3458888888888888876 245667889999999999998888877321 221 33344444 32234566
Q ss_pred HHHHhcCccc-----cccHHHHHHHHHHHHHhc----CCcEEEEEeCCCcch-------hhhhhcCCCCCCCCCeEEEEe
Q 038663 228 IAELLKFKIE-----EENELQRRATLAKRLRER----TKKVLIILDDVREKI-------NLAVSGIPYGEEGNRCKVIVT 291 (385)
Q Consensus 228 i~~~l~~~~~-----~~~~~~~~~~l~~~l~~~----~kr~LlVlDdv~~~~-------~~~~l~~~~~~~~~gs~iivT 291 (385)
|..++..... ..+-.+....+...|+.+ +.++++|+|+++-.. -++-+-..-....+-|-|.+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 6666543211 112233345555555533 245788888775321 111111111123345677899
Q ss_pred eCChhh-------hhhcC-CceEEcCCCCHHHHHHHHHHhh
Q 038663 292 SRRLDV-------CSKMS-DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 292 tr~~~v-------~~~~~-~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
||-... -+..+ -.++-+++++-++...++++.+
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 987654 22233 3356667888899999999877
No 161
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.70 E-value=0.0003 Score=73.22 Aligned_cols=156 Identities=13% Similarity=0.190 Sum_probs=85.0
Q ss_pred CcchHHHHHHHHHHhcc---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHH
Q 038663 159 LESSSKALNSIMKLLKD---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIA 229 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~ 229 (385)
++|.+..++.|.+.+.. .....+.++||+|+|||+||+.+..... ..| +.+..+...+ -..+.
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~~~-----i~id~se~~~-~~~~~ 531 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IEL-----LRFDMSEYME-RHTVS 531 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--CCc-----EEeechhhcc-cccHH
Confidence 56777777777776641 1245789999999999999999988774 112 2233331110 00122
Q ss_pred HHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCC-----------CCCeEEEEeeCChh
Q 038663 230 ELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEE-----------GNRCKVIVTSRRLD 296 (385)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~iivTtr~~~ 296 (385)
.-++.+..... ......+.+.++.. ...+|+||++... +.+..+...+.++ -.++-+|+||....
T Consensus 532 ~LiG~~~gyvg-~~~~g~L~~~v~~~-p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~ 609 (758)
T PRK11034 532 RLIGAPPGYVG-FDQGGLLTDAVIKH-PHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGV 609 (758)
T ss_pred HHcCCCCCccc-ccccchHHHHHHhC-CCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCH
Confidence 22232211110 01112344445542 4569999999754 3334333222111 13455888886220
Q ss_pred ----------------------h-----hhhcC--CceEEcCCCCHHHHHHHHHHhh
Q 038663 297 ----------------------V-----CSKMS--DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 297 ----------------------v-----~~~~~--~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
+ ...++ +.++.+.||+.++...+....+
T Consensus 610 ~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred HHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHH
Confidence 0 11123 5678889999988887776543
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00021 Score=73.34 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=96.3
Q ss_pred CCCCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCC----CceEEEEEcCCHHHHHHHH
Q 038663 153 TPDYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYD----KAHVIVAESSDLRRIQDKI 228 (385)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~----~~~~~wv~vs~~~~l~~~i 228 (385)
.....|++||++|+..+++.|....-.--.++|.+|+|||+++.-++.+.-..+ -+ +...+-. ++-.+.
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~-VP~~L~~~~i~sL---D~g~Lv--- 238 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGD-VPESLKDKRIYSL---DLGSLV--- 238 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCC-CCHHHcCCEEEEe---cHHHHh---
Confidence 355678999999999999999743333346899999999999999998865331 11 0011111 111111
Q ss_pred HHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-------h-hh--hhcCCCCCCCCCeEEEEeeCChhh-
Q 038663 229 AELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI-------N-LA--VSGIPYGEEGNRCKVIVTSRRLDV- 297 (385)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-------~-~~--~l~~~~~~~~~gs~iivTtr~~~v- 297 (385)
.....-.+-++....+.+.++.. ++++|++|++++.- . .+ .+..|....+.--.|-.||-.+--
T Consensus 239 ----AGakyRGeFEeRlk~vl~ev~~~-~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk 313 (786)
T COG0542 239 ----AGAKYRGEFEERLKAVLKEVEKS-KNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRK 313 (786)
T ss_pred ----ccccccCcHHHHHHHHHHHHhcC-CCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHH
Confidence 11111123445566666677765 49999999998641 1 11 222222223333356777755432
Q ss_pred ------hhhcCCceEEcCCCCHHHHHHHHHHhh
Q 038663 298 ------CSKMSDVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 298 ------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
|-....+.+.+..-+.+++..+++-..
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 222226788899999999999887644
No 163
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.0041 Score=58.33 Aligned_cols=173 Identities=9% Similarity=0.019 Sum_probs=96.5
Q ss_pred HHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhCCCC-CceEEEEEcCCHHHHHHHHHHHhcC------c-
Q 038663 165 ALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYD-KAHVIVAESSDLRRIQDKIAELLKF------K- 235 (385)
Q Consensus 165 ~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~~~wv~vs~~~~l~~~i~~~l~~------~- 235 (385)
..+.|.+.+..+.. .-+.++|+.|+||+++|..+....--..... ..|. .-.-.+.+...--. +
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg-------~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCG-------QCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCC-------CCHHHHHHhcCCCCCEEEEccc
Confidence 34566666666554 5677999999999999999998753211110 0000 00000000000000 0
Q ss_pred -cccccHHHHHHHHHHHHHhc---CCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCCh-hhhhh-cC-CceE
Q 038663 236 -IEEENELQRRATLAKRLRER---TKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRL-DVCSK-MS-DVTV 306 (385)
Q Consensus 236 -~~~~~~~~~~~~l~~~l~~~---~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~-~~-~~~~ 306 (385)
......++ ...+.+.+... +++=++|||+++.. ...+.+...+.+...++.+|++|.+. .+... .+ +..+
T Consensus 83 ~~~~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 83 DNKDIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred cCCCCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 00111121 22333333211 25567889998754 44555555555555566777666654 44433 33 7899
Q ss_pred EcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHH
Q 038663 307 QIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAI 350 (385)
Q Consensus 307 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 350 (385)
.+.+++.++..+.+....+.. ...+...+..++|.|+..
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~~-----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSAE-----ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhccC-----hHHHHHHHHHcCCCHHHH
Confidence 999999999999888764321 123456778899999633
No 164
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.66 E-value=0.00099 Score=59.10 Aligned_cols=171 Identities=14% Similarity=0.210 Sum_probs=96.6
Q ss_pred CCCCcchHHHH---HHHHHHhccC------CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHH
Q 038663 156 YVPLESSSKAL---NSIMKLLKDE------KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQD 226 (385)
Q Consensus 156 ~~~~~gr~~~~---~~l~~~L~~~------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~ 226 (385)
+.+++|.++.. .-|+++|.++ .++.|..+||+|+|||.+|+.+.+..++- |- .+. ..+++.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~l-------~vk-at~liG 189 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--LL-------LVK-ATELIG 189 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--eE-------Eec-hHHHHH
Confidence 34567776543 4466677643 57899999999999999999999987642 22 111 111111
Q ss_pred HHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch--------------hhhhhcCCCC--CCCCCeEEEE
Q 038663 227 KIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI--------------NLAVSGIPYG--EEGNRCKVIV 290 (385)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~--------------~~~~l~~~~~--~~~~gs~iiv 290 (385)
+.. .+....+..+.+.-+.. -+|+++||++.... ..+.+...+. ..+.|...|.
T Consensus 190 ---ehV------Gdgar~Ihely~rA~~~-aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 190 ---EHV------GDGARRIHELYERARKA-APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred ---HHh------hhHHHHHHHHHHHHHhc-CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 111 12222334444444433 78999999986331 1222222221 1344666666
Q ss_pred eeCChhhhhh-cC---CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCCh
Q 038663 291 TSRRLDVCSK-MS---DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP 347 (385)
Q Consensus 291 Ttr~~~v~~~-~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (385)
.|.+...... .. ..-++...-++++-..++...+..-+-+ ...-.+.++++++|+.
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp-v~~~~~~~~~~t~g~S 319 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP-VDADLRYLAAKTKGMS 319 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc-cccCHHHHHHHhCCCC
Confidence 6666554221 21 5667888888899999988877322111 1111345666777664
No 165
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.66 E-value=0.0022 Score=60.33 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDL 221 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~ 221 (385)
..+.++|++|+|||.||..+.+..-... + .++++++.++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g-~---~V~y~t~~~l 222 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG-K---SVIYRTADEL 222 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC-C---eEEEEEHHHH
Confidence 7799999999999999999999876432 2 4555555443
No 166
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0009 Score=66.00 Aligned_cols=149 Identities=18% Similarity=0.270 Sum_probs=86.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERT 256 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 256 (385)
...-|.++||+|+|||-||+.|+++.+. +|- +|.. .+++..- ...+.. ....+.+.-+..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~--NFi-------sVKG-PELlNkY--------VGESEr-AVR~vFqRAR~s- 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGA--NFI-------SVKG-PELLNKY--------VGESER-AVRQVFQRARAS- 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccC--ceE-------eecC-HHHHHHH--------hhhHHH-HHHHHHHHhhcC-
Confidence 4567899999999999999999998773 353 2221 1111110 111122 223333333332
Q ss_pred CcEEEEEeCCCcch-------------hhhhhcCCCC--CCCCCeEEEEeeCChhh--hhhcC----CceEEcCCCCHHH
Q 038663 257 KKVLIILDDVREKI-------------NLAVSGIPYG--EEGNRCKVIVTSRRLDV--CSKMS----DVTVQIEELGEED 315 (385)
Q Consensus 257 kr~LlVlDdv~~~~-------------~~~~l~~~~~--~~~~gs~iivTtr~~~v--~~~~~----~~~~~l~~L~~~~ 315 (385)
-+|+|+||++.... ..+.+...+. +...|..||-.|...++ +..+. +...-+..-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 79999999986431 1222222221 23457777777766654 22222 6777788888899
Q ss_pred HHHHHHHhhCCC-----CCcchHHHHHHHHHHhCCCh
Q 038663 316 RLKLFKQIARLP-----DSEAFEGAAKVIVKACGSLP 347 (385)
Q Consensus 316 ~~~lf~~~~~~~-----~~~~~~~~~~~I~~~c~GlP 347 (385)
-.++++...... .+-+++++++. .+|.|+-
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 999999887522 33455555442 3566764
No 167
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.66 E-value=0.0051 Score=57.94 Aligned_cols=42 Identities=21% Similarity=0.446 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcc---CCceEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 164 KALNSIMKLLKD---EKVNIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 164 ~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
...+.|.+.+.+ +...+|+|.|+=|+||||+.+.+.+.++..
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 345666666654 467899999999999999999999998765
No 168
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.0003 Score=63.78 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=47.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERT 256 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 256 (385)
+..-+.++|++|+|||.||..+.++.- +..+ .+.+++++ +++.++...... ......|.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~---sv~f~~~~---el~~~Lk~~~~~-------~~~~~~l~~~l~--- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI---SVLFITAP---DLLSKLKAAFDE-------GRLEEKLLRELK--- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC---eEEEEEHH---HHHHHHHHHHhc-------CchHHHHHHHhh---
Confidence 667899999999999999999999987 4334 34444444 444444433321 111223333333
Q ss_pred CcEEEEEeCCCc
Q 038663 257 KKVLIILDDVRE 268 (385)
Q Consensus 257 kr~LlVlDdv~~ 268 (385)
+-=||||||+-.
T Consensus 167 ~~dlLIiDDlG~ 178 (254)
T COG1484 167 KVDLLIIDDIGY 178 (254)
T ss_pred cCCEEEEecccC
Confidence 456899999854
No 169
>PRK04132 replication factor C small subunit; Provisional
Probab=97.65 E-value=0.0014 Score=68.70 Aligned_cols=156 Identities=13% Similarity=0.085 Sum_probs=92.8
Q ss_pred EEc--CCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCC--HHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCc
Q 038663 183 VQG--PGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSD--LRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKK 258 (385)
Q Consensus 183 I~G--~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~--~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr 258 (385)
+.| |.++||||+|+.++++.-.. .+. ...+-++.++ -.+..++++..+....+ +.+ .+.
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~-~~~-~~~lElNASd~rgid~IR~iIk~~a~~~~--------------~~~-~~~ 631 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGE-NWR-HNFLELNASDERGINVIREKVKEFARTKP--------------IGG-ASF 631 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcc-ccc-CeEEEEeCCCcccHHHHHHHHHHHHhcCC--------------cCC-CCC
Confidence 347 88999999999999986322 122 1344555552 22333333333211000 001 145
Q ss_pred EEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChh-hhhhc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchH
Q 038663 259 VLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLD-VCSKM-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFE 333 (385)
Q Consensus 259 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~ 333 (385)
-++|||+++.. .....+...+......+++|++|.... +...+ + +..+.+.+++.++....+...+......-..
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~ 711 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTE 711 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 79999999865 355555555544344566666665443 33332 3 7899999999999998888766322111124
Q ss_pred HHHHHHHHHhCCChHHHHHHHH
Q 038663 334 GAAKVIVKACGSLPSAIAIVAG 355 (385)
Q Consensus 334 ~~~~~I~~~c~GlPlai~~~~~ 355 (385)
+....|++.|+|-+-....+-.
T Consensus 712 e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 5778899999998854444333
No 170
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.62 E-value=0.00027 Score=61.51 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=58.4
Q ss_pred HHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-C-----------HHH----HHHH
Q 038663 164 KALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-D-----------LRR----IQDK 227 (385)
Q Consensus 164 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~-----------~~~----l~~~ 227 (385)
.+-...++.|. ...++.+.|++|+|||.||-...-+.-....|+ ..+++.-. . ..+ .+.-
T Consensus 7 ~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~--kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 7 EEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYD--KIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp HHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S--EEEEEE-S--TT----SS---------TTTHH
T ss_pred HHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc--EEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 33444555555 356999999999999999999886654446677 55554332 1 000 1111
Q ss_pred HHHHhcCccccccHHHHHHH------HHHHHHhcC-CcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChh
Q 038663 228 IAELLKFKIEEENELQRRAT------LAKRLRERT-KKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLD 296 (385)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~------l~~~l~~~~-kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~ 296 (385)
+.+.+..-........+... -..++++.. ...+||+|++.+. .++..+... -+.||++|++--...
T Consensus 83 ~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 83 IYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPSQ 157 (205)
T ss_dssp HHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE----
T ss_pred HHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCcee
Confidence 22222211111111111100 002333311 2468999999865 466666444 357899999886654
No 171
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.62 E-value=0.00046 Score=73.19 Aligned_cols=159 Identities=16% Similarity=0.209 Sum_probs=86.2
Q ss_pred CCcchHHHHHHHHHHhcc-------C--CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHH
Q 038663 158 PLESSSKALNSIMKLLKD-------E--KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKI 228 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i 228 (385)
.++|.+..++.+...+.. . ...++.++||+|+|||+||+.+.+..-... . ..+-+..+...+ ...+
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~--~--~~~~~d~s~~~~-~~~~ 584 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE--D--AMIRLDMSEYME-KHTV 584 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc--c--ceEEEEchhccc-cccH
Confidence 367888888888777641 1 234678999999999999999998753211 1 222223331100 0011
Q ss_pred HHHhcCccccccHHHHHHHHHHHHHhcCCc-EEEEEeCCCcc--hhhhhhcCCCCCC-----------CCCeEEEEeeCC
Q 038663 229 AELLKFKIEEENELQRRATLAKRLRERTKK-VLIILDDVREK--INLAVSGIPYGEE-----------GNRCKVIVTSRR 294 (385)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~iivTtr~ 294 (385)
...++.+..... ......+.+.++. ++ .+++|||+... ..++.+...+..+ ..++.+|+||..
T Consensus 585 ~~l~g~~~gyvg-~~~~~~l~~~~~~--~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 585 SKLIGSPPGYVG-YNEGGQLTEAVRK--KPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred HHhcCCCCcccC-cCccchHHHHHHh--CCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 111221111100 0011234556666 44 58889999744 3344443333221 235667888764
Q ss_pred hhh---------------------------------------hhhcC--CceEEcCCCCHHHHHHHHHHhh
Q 038663 295 LDV---------------------------------------CSKMS--DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 295 ~~v---------------------------------------~~~~~--~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
..- +..++ +.++.+.||+.++...++...+
T Consensus 662 g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 662 GSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred chHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 210 01122 4678888888888887776654
No 172
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0015 Score=66.72 Aligned_cols=171 Identities=17% Similarity=0.192 Sum_probs=103.6
Q ss_pred CCcchH---HHHHHHHHHhccC---------CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHH
Q 038663 158 PLESSS---KALNSIMKLLKDE---------KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRR 223 (385)
Q Consensus 158 ~~~gr~---~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~ 223 (385)
++-|-+ .|+.+++++|.++ -++-+.++||+|+|||-||+.++-+..+- | ++++ ...+
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP--F-------~svSGSEFvE 382 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--F-------FSVSGSEFVE 382 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc--e-------eeechHHHHH
Confidence 344544 5677777788753 35678999999999999999999876531 2 2333 3333
Q ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-----------------hhhhhcCCCCCC--CC
Q 038663 224 IQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI-----------------NLAVSGIPYGEE--GN 284 (385)
Q Consensus 224 l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-----------------~~~~l~~~~~~~--~~ 284 (385)
++... . ......|...-+.. .+++|.+|++.... .++.+...+... ..
T Consensus 383 ~~~g~-----------~-asrvr~lf~~ar~~-aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 383 MFVGV-----------G-ASRVRDLFPLARKN-APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred Hhccc-----------c-hHHHHHHHHHhhcc-CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 22211 1 22233333333332 78899999986431 122222222111 13
Q ss_pred CeEEEEeeCChhhhh--hcC----CceEEcCCCCHHHHHHHHHHhhCCC-CCcchHHHHHHHHHHhCCChHHHH
Q 038663 285 RCKVIVTSRRLDVCS--KMS----DVTVQIEELGEEDRLKLFKQIARLP-DSEAFEGAAKVIVKACGSLPSAIA 351 (385)
Q Consensus 285 gs~iivTtr~~~v~~--~~~----~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~I~~~c~GlPlai~ 351 (385)
+.-++.+|+..++.. .+. ++.+.++.-+.....++|.-++... ...+..+..+ |+..+-|++=|..
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHHH
Confidence 344555666665522 222 7788999999999999999998655 3345556666 8888888886644
No 173
>PRK07261 topology modulation protein; Provisional
Probab=97.56 E-value=0.00036 Score=59.40 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.|.|+|++|+||||||+.+.....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999987754
No 174
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.55 E-value=0.00024 Score=61.87 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=42.9
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
..+++|.++.++.+.-...+++.+.+.|.||+|+||||-+..+++.+-.
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 4568999999999888888889999999999999999999999887643
No 175
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0023 Score=63.78 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=84.0
Q ss_pred CCCCCcchHHHHHHHHHHhc-------------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCH
Q 038663 155 DYVPLESSSKALNSIMKLLK-------------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDL 221 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~ 221 (385)
...++=|-++...+|.+... -...+-|.++||+|+|||++|+.+.+.... +|- .++ .
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~--nFl-------svk-g 501 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM--NFL-------SVK-G 501 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC--Cee-------ecc-C
Confidence 33445566666555554432 135778999999999999999999998763 243 121 1
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh-------------hhhhcCCCCC--CCCCe
Q 038663 222 RRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSGIPYGE--EGNRC 286 (385)
Q Consensus 222 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~--~~~gs 286 (385)
.+++. .+...++..+.+.+.+.-+. -+++|+||+++.... +..+...+.. ..++.
T Consensus 502 pEL~s--------k~vGeSEr~ir~iF~kAR~~--aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 502 PELFS--------KYVGESERAIREVFRKARQV--APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred HHHHH--------HhcCchHHHHHHHHHHHhhc--CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 11111 11122222222233333333 679999999864321 1111111111 12244
Q ss_pred EEEEeeCChhh--hhhcC----CceEEcCCCCHHHHHHHHHHhhCCC
Q 038663 287 KVIVTSRRLDV--CSKMS----DVTVQIEELGEEDRLKLFKQIARLP 327 (385)
Q Consensus 287 ~iivTtr~~~v--~~~~~----~~~~~l~~L~~~~~~~lf~~~~~~~ 327 (385)
-||..|...+. ...+. +..+.+++=+.+...++|+.++...
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 45555544433 11222 6778888888888889999988544
No 176
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0071 Score=57.14 Aligned_cols=173 Identities=11% Similarity=0.052 Sum_probs=96.1
Q ss_pred HHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhCCCC-CceEEEEEcCCHHHHHHHHHHHh-------cCc
Q 038663 165 ALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYD-KAHVIVAESSDLRRIQDKIAELL-------KFK 235 (385)
Q Consensus 165 ~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~~~wv~vs~~~~l~~~i~~~l-------~~~ 235 (385)
.-+.|...+..++. .-+.+.|+.|+||+++|..+...+--...-. ..|. .|-+ .+.+...- ...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg--~C~s-----C~~~~~g~HPD~~~i~p~ 82 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCG--HCRG-----CQLMQAGTHPDYYTLTPE 82 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCC--CCHH-----HHHHHcCCCCCEEEEecc
Confidence 34566677766554 4677999999999999999988753211100 0000 0000 00000000 000
Q ss_pred c--ccccHHHHHHHHHHHHHhc---CCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCC-hhhhhh-cC-Cce
Q 038663 236 I--EEENELQRRATLAKRLRER---TKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRR-LDVCSK-MS-DVT 305 (385)
Q Consensus 236 ~--~~~~~~~~~~~l~~~l~~~---~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~-~~-~~~ 305 (385)
. .....++ ...+.+.+... +++=++|||+++.. ..-+.+...+.+...++.+|++|.+ ..+... .+ +..
T Consensus 83 ~~~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 83 KGKSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred cccccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 0 0111222 22333333211 25668899988744 3445554555454556666666655 445433 33 778
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHH
Q 038663 306 VQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAI 350 (385)
Q Consensus 306 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 350 (385)
+.+.+++.++....+....|.+ .+.+..++..++|.|...
T Consensus 162 ~~~~~~~~~~~~~~L~~~~~~~-----~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREVTMS-----QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccCCCCCHHHHHHHHHHccCCC-----HHHHHHHHHHcCCCHHHH
Confidence 9999999999998887654321 233567889999999743
No 177
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0087 Score=56.54 Aligned_cols=87 Identities=11% Similarity=0.069 Sum_probs=57.0
Q ss_pred CcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCC-hhhhhh-cC-CceEEcCCCCHHHHHHHHHHhhCCCCCcc
Q 038663 257 KKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRR-LDVCSK-MS-DVTVQIEELGEEDRLKLFKQIARLPDSEA 331 (385)
Q Consensus 257 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 331 (385)
++=++|||+++.. ...+.+...+.+...++.+|++|.+ ..+... .+ +..+.+.+++.++..+.+... |.. +
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~~--~- 207 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GVA--D- 207 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CCC--h-
Confidence 4558889998754 4556665555555556655555544 555443 33 789999999999999988775 321 1
Q ss_pred hHHHHHHHHHHhCCChHHHH
Q 038663 332 FEGAAKVIVKACGSLPSAIA 351 (385)
Q Consensus 332 ~~~~~~~I~~~c~GlPlai~ 351 (385)
...++..++|.|+...
T Consensus 208 ----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 208 ----ADALLAEAGGAPLAAL 223 (342)
T ss_pred ----HHHHHHHcCCCHHHHH
Confidence 1235778899997444
No 178
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.0013 Score=61.89 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=77.7
Q ss_pred CcchHHHHHHHHHHhc-cCCceE-EEEEcCCCCchHHHHHHHHHHhhhhCC-------------------CCCceEEEEE
Q 038663 159 LESSSKALNSIMKLLK-DEKVNI-IGVQGPGGVGKSTLMEQLAKQIDTIAP-------------------YDKAHVIVAE 217 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~-~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~~~~wv~ 217 (385)
+++-+.....+..+.. .++... +.++||+|+||||+|..+.+.+..... .. ....+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--d~lel~ 80 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP--DFLELN 80 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCC--ceEEec
Confidence 4555666777777776 444566 999999999999999999998753221 11 222222
Q ss_pred cC---C---HHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEE
Q 038663 218 SS---D---LRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVI 289 (385)
Q Consensus 218 vs---~---~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii 289 (385)
.+ . ..+..+++.+....... .+ +.-+++||++... +.-..+...+......+++|
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~---------------~~--~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPL---------------EG--GYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCC---------------CC--CceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 22 1 11222222222211000 12 6788999999754 33444444444455667787
Q ss_pred EeeCC-hhhhhhcC--CceEEcCCCCH
Q 038663 290 VTSRR-LDVCSKMS--DVTVQIEELGE 313 (385)
Q Consensus 290 vTtr~-~~v~~~~~--~~~~~l~~L~~ 313 (385)
++|.. ..+...+. +..+.+.+.+.
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCchH
Confidence 77763 33433333 67788887443
No 179
>PRK09183 transposase/IS protein; Provisional
Probab=97.53 E-value=0.0016 Score=59.31 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+.|+|++|+|||+||..+.....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35778999999999999999987754
No 180
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.51 E-value=0.00077 Score=58.63 Aligned_cols=84 Identities=20% Similarity=0.328 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCcccc----ccHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFKIEE----ENELQRRATLA 249 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~~~~----~~~~~~~~~l~ 249 (385)
++++.++|+.|+||||.+.+++.....+ . . .+..++.. ...+-++..++.++.+... .+..+......
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~-~--~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l 76 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-G-K--KVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREAL 76 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T-----EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-c-c--cceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHH
Confidence 4789999999999999999888887654 2 2 56666666 5566677778888764321 12333333333
Q ss_pred HHHHhcCCcEEEEEeCC
Q 038663 250 KRLRERTKKVLIILDDV 266 (385)
Q Consensus 250 ~~l~~~~kr~LlVlDdv 266 (385)
+..... +.=+|++|=.
T Consensus 77 ~~~~~~-~~D~vlIDT~ 92 (196)
T PF00448_consen 77 EKFRKK-GYDLVLIDTA 92 (196)
T ss_dssp HHHHHT-TSSEEEEEE-
T ss_pred HHHhhc-CCCEEEEecC
Confidence 333331 3346677754
No 181
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.011 Score=60.03 Aligned_cols=147 Identities=15% Similarity=0.152 Sum_probs=81.2
Q ss_pred CCCCcchHHHHHHHHHHhcc---------C---CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHH
Q 038663 156 YVPLESSSKALNSIMKLLKD---------E---KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRR 223 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~---------~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~ 223 (385)
..++=|-++.+.+|.+-+.- . ...-|.++||+|+|||-||+.|+.+..-. | ++|... +
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~--F-------lSVKGP-E 740 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN--F-------LSVKGP-E 740 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee--E-------EeecCH-H
Confidence 34566788888888876641 1 24578899999999999999999875521 2 233311 1
Q ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-----------h--------hhhhcCCCCCCCC
Q 038663 224 IQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI-----------N--------LAVSGIPYGEEGN 284 (385)
Q Consensus 224 l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-----------~--------~~~l~~~~~~~~~ 284 (385)
++.. .-..++....+.+.+.-.. ++|+|+||++++.. . +.++-..-.....
T Consensus 741 LLNM--------YVGqSE~NVR~VFerAR~A--~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~ 810 (953)
T KOG0736|consen 741 LLNM--------YVGQSEENVREVFERARSA--APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQ 810 (953)
T ss_pred HHHH--------HhcchHHHHHHHHHHhhcc--CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCC
Confidence 1111 0112223233333333334 99999999997541 1 1222111111334
Q ss_pred CeEEEEeeCChhhh--hhcC----CceEEcCCCCHHHHHHHHHH
Q 038663 285 RCKVIVTSRRLDVC--SKMS----DVTVQIEELGEEDRLKLFKQ 322 (385)
Q Consensus 285 gs~iivTtr~~~v~--~~~~----~~~~~l~~L~~~~~~~lf~~ 322 (385)
+.-||-.|...+.. ..+. +..+.+.+=.++++..=..+
T Consensus 811 ~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~ 854 (953)
T KOG0736|consen 811 DVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLE 854 (953)
T ss_pred ceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHH
Confidence 55566666555542 2222 56667777666666554333
No 182
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.50 E-value=9.3e-05 Score=58.94 Aligned_cols=24 Identities=46% Similarity=0.789 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+|.|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999864
No 183
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0019 Score=62.88 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhccC---------CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 163 SKALNSIMKLLKDE---------KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 163 ~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
..|+++|+++|.++ =++-|.++||+|.|||-||+.|+-+..+
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 45889999999854 2467899999999999999999987664
No 184
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.49 E-value=0.00017 Score=67.85 Aligned_cols=47 Identities=28% Similarity=0.471 Sum_probs=40.9
Q ss_pred CCcchHHHHHHHHHHhcc------CCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 158 PLESSSKALNSIMKLLKD------EKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
.++|.++.++++++++.. ...+++.|+||+|+||||||+.+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 588999999999999853 24579999999999999999999998764
No 185
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.48 E-value=0.00023 Score=62.15 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCc
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKK 258 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr 258 (385)
.++.|+|+.|+||||+++.+....... .. ..+++--.+...........+.......+.......+...++. .+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~--~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~--~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KT--HHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQ--DP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CC--cEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcC--Cc
Confidence 478999999999999999888776422 22 3333222222111110000000000011122345566777776 67
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhhhc
Q 038663 259 VLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCSKM 301 (385)
Q Consensus 259 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~ 301 (385)
=+|++|++.+.+......... ..|..++.|+...++....
T Consensus 76 d~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~~ 115 (198)
T cd01131 76 DVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAKTI 115 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHHHH
Confidence 799999998766544332221 2355688888877765443
No 186
>PRK06526 transposase; Provisional
Probab=97.47 E-value=0.00019 Score=65.11 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...+.|+|++|+|||+||..+......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 457899999999999999999887653
No 187
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00036 Score=63.63 Aligned_cols=138 Identities=16% Similarity=0.191 Sum_probs=74.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhh--CCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhc
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTI--APYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRER 255 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 255 (385)
-++|.++||+|.|||+|.+.+++.+.++ ..+. ...-+.++ ...++...+..- ..-...+.+.|.+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~--~~~liEin-shsLFSKWFsES-----gKlV~kmF~kI~ELv~d~ 248 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYY--KGQLIEIN-SHSLFSKWFSES-----GKLVAKMFQKIQELVEDR 248 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccc--cceEEEEe-hhHHHHHHHhhh-----hhHHHHHHHHHHHHHhCC
Confidence 4789999999999999999999997654 2333 22333333 223333322221 112334556667777774
Q ss_pred CCcEEEEEeCCCcchhh-----------------hhhcCCCC--CCCCCeEEEEeeCC-hh---hhhhcC-CceEEcCCC
Q 038663 256 TKKVLIILDDVREKINL-----------------AVSGIPYG--EEGNRCKVIVTSRR-LD---VCSKMS-DVTVQIEEL 311 (385)
Q Consensus 256 ~kr~LlVlDdv~~~~~~-----------------~~l~~~~~--~~~~gs~iivTtr~-~~---v~~~~~-~~~~~l~~L 311 (385)
+.-+++.+|+|.+...- +.+...+. ...++. +|+||.+ .+ +|-.-+ +-..-+.+-
T Consensus 249 ~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv-liL~TSNl~~siD~AfVDRADi~~yVG~P 327 (423)
T KOG0744|consen 249 GNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV-LILATSNLTDSIDVAFVDRADIVFYVGPP 327 (423)
T ss_pred CcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE-EEEeccchHHHHHHHhhhHhhheeecCCc
Confidence 34455678998643211 11100000 011233 4445544 22 221111 456677888
Q ss_pred CHHHHHHHHHHhh
Q 038663 312 GEEDRLKLFKQIA 324 (385)
Q Consensus 312 ~~~~~~~lf~~~~ 324 (385)
+.+...++++.+.
T Consensus 328 t~~ai~~Ilksci 340 (423)
T KOG0744|consen 328 TAEAIYEILKSCI 340 (423)
T ss_pred cHHHHHHHHHHHH
Confidence 8888888887765
No 188
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.45 E-value=0.00066 Score=61.69 Aligned_cols=90 Identities=22% Similarity=0.282 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
...-++|+|.+|+|||||++.+++....+ |.+ .++++.++ ...++...+...-.. .....+.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~--~~~-~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA--HGG-YSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc--CCC-EEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34578999999999999999999988753 543 56677777 444555555432111 1111111
Q ss_pred --HHHHHHHHHHHHhc-CCcEEEEEeCCCcc
Q 038663 242 --LQRRATLAKRLRER-TKKVLIILDDVREK 269 (385)
Q Consensus 242 --~~~~~~l~~~l~~~-~kr~LlVlDdv~~~ 269 (385)
....-.+-+++++. ++.+|+++||+-..
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 11233466777654 59999999998643
No 189
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0043 Score=62.20 Aligned_cols=149 Identities=18% Similarity=0.182 Sum_probs=84.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERT 256 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 256 (385)
..+.+.++||+|+|||.||+.+++..+. +|- .+... .++. .+-..........+....+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~--~fi-------~v~~~-~l~s--------k~vGesek~ir~~F~~A~~~-- 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRS--RFI-------SVKGS-ELLS--------KWVGESEKNIRELFEKARKL-- 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCC--eEE-------EeeCH-HHhc--------cccchHHHHHHHHHHHHHcC--
Confidence 4568999999999999999999996552 243 11111 2111 11112222233333333345
Q ss_pred CcEEEEEeCCCcchh-------------hhhhcCCCC--CCCCCeEEEEeeCChhhhh---hc--C-CceEEcCCCCHHH
Q 038663 257 KKVLIILDDVREKIN-------------LAVSGIPYG--EEGNRCKVIVTSRRLDVCS---KM--S-DVTVQIEELGEED 315 (385)
Q Consensus 257 kr~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~gs~iivTtr~~~v~~---~~--~-~~~~~l~~L~~~~ 315 (385)
.+++|+||++..... ...+...+. +...+..||-||....... .. . ...+.+.+-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 899999999864321 112222221 2234555666665554322 22 2 7789999999999
Q ss_pred HHHHHHHhhCCCCCc-chHHHHHHHHHHhCC
Q 038663 316 RLKLFKQIARLPDSE-AFEGAAKVIVKACGS 345 (385)
Q Consensus 316 ~~~lf~~~~~~~~~~-~~~~~~~~I~~~c~G 345 (385)
..++|+.+....... ...-..+.+++.+.|
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 999999998643211 111233445555555
No 190
>PRK12377 putative replication protein; Provisional
Probab=97.40 E-value=0.0008 Score=60.64 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=44.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCC
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTK 257 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 257 (385)
...+.|+|++|+|||+||..+.+..... .. .+.+++++ +++..+-..... .... ..+.+.+. +
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~--~v~~i~~~---~l~~~l~~~~~~---~~~~----~~~l~~l~---~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GR--SVIVVTVP---DVMSRLHESYDN---GQSG----EKFLQELC---K 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CC--CeEEEEHH---HHHHHHHHHHhc---cchH----HHHHHHhc---C
Confidence 4678999999999999999999997643 22 44555554 333333332211 0011 12233332 5
Q ss_pred cEEEEEeCCC
Q 038663 258 KVLIILDDVR 267 (385)
Q Consensus 258 r~LlVlDdv~ 267 (385)
-=||||||+.
T Consensus 164 ~dLLiIDDlg 173 (248)
T PRK12377 164 VDLLVLDEIG 173 (248)
T ss_pred CCEEEEcCCC
Confidence 7799999994
No 191
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.37 E-value=0.0013 Score=61.43 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=65.2
Q ss_pred chHHHHHHHHHHhcc----CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCcc
Q 038663 161 SSSKALNSIMKLLKD----EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKI 236 (385)
Q Consensus 161 gr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~ 236 (385)
++........+++.. ...+-+.|+|+.|+|||.||..+++..... .+ .+.+++++ .++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~---~v~~~~~~---~l~~~lk~~~~~-- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GV---SSTLLHFP---EFIRELKNSISD-- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC---CEEEEEHH---HHHHHHHHHHhc--
Confidence 444444444555542 245679999999999999999999997632 23 34555554 344444433321
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhh--hhcCCCCC-C-CCCeEEEEeeCCh
Q 038663 237 EEENELQRRATLAKRLRERTKKVLIILDDVREK--INLA--VSGIPYGE-E-GNRCKVIVTSRRL 295 (385)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~--~l~~~~~~-~-~~gs~iivTtr~~ 295 (385)
.+. ....+.+. +-=||||||+... ..|. ++...+.+ . ..+-.+|+||...
T Consensus 206 --~~~----~~~l~~l~---~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 206 --GSV----KEKIDAVK---EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred --CcH----HHHHHHhc---CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 111 11222232 5678999999633 4454 23222211 1 1344577787543
No 192
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.36 E-value=0.0053 Score=63.34 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCc
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKK 258 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr 258 (385)
+-+.|+|++|+|||++++.+...... .|- .++.++...... ..........+...... .+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~--~f~-----~is~~~~~~~~~-----------g~~~~~~~~~f~~a~~~--~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV--PFF-----TISGSDFVEMFV-----------GVGASRVRDMFEQAKKA--AP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--CEE-----EEehHHhHHhhh-----------cccHHHHHHHHHHHHhc--CC
Confidence 45899999999999999999887652 121 122222211110 11111122222222233 68
Q ss_pred EEEEEeCCCcch----------------hhhhhcCCCC--CCCCCeEEEEeeCChhhhh---hc-C--CceEEcCCCCHH
Q 038663 259 VLIILDDVREKI----------------NLAVSGIPYG--EEGNRCKVIVTSRRLDVCS---KM-S--DVTVQIEELGEE 314 (385)
Q Consensus 259 ~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~gs~iivTtr~~~v~~---~~-~--~~~~~l~~L~~~ 314 (385)
++|+|||++... ....+...+. ....+.-+|.||....... .. + +..+.+...+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 999999986531 1111211111 1223556666777665321 11 2 678889999988
Q ss_pred HHHHHHHHhhCC
Q 038663 315 DRLKLFKQIARL 326 (385)
Q Consensus 315 ~~~~lf~~~~~~ 326 (385)
+-.+++..+...
T Consensus 326 ~R~~Il~~~~~~ 337 (644)
T PRK10733 326 GREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHhhc
Confidence 888898887744
No 193
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.36 E-value=0.002 Score=53.73 Aligned_cols=36 Identities=42% Similarity=0.476 Sum_probs=28.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS 219 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs 219 (385)
++.|+|++|+||||++..+....... -. .++++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~--~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GG--KVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CC--EEEEEECC
Confidence 46899999999999999998876531 22 67777777
No 194
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.33 E-value=0.0023 Score=54.27 Aligned_cols=56 Identities=11% Similarity=0.271 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCcEEEEEeCC----CcchhhhhhcCCCCCCCCCeEEEEeeCChhhhhhcC
Q 038663 245 RATLAKRLRERTKKVLIILDDV----REKINLAVSGIPYGEEGNRCKVIVTSRRLDVCSKMS 302 (385)
Q Consensus 245 ~~~l~~~l~~~~kr~LlVlDdv----~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~ 302 (385)
.-.|.+.+-+ ++-+|+=|+- +....|+-+...-.-+..|+.|+++|.+...-..+.
T Consensus 145 RvaIARAiV~--~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 145 RVAIARAIVN--QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHcc--CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3445566666 7888888863 333455543222112556999999999998877665
No 195
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.33 E-value=0.0029 Score=55.61 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=62.9
Q ss_pred CCCcchHHHHHHHHHH----hccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHh
Q 038663 157 VPLESSSKALNSIMKL----LKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELL 232 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~----L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l 232 (385)
..++|-+...+.|++. +.+.....+.++|..|+|||+|++.+.+..... .- . -|.|.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--gl--r--LVEV~------------- 120 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GL--R--LVEVD------------- 120 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CC--e--EEEEc-------------
Confidence 3466766666666654 345556788999999999999999999998754 22 1 22222
Q ss_pred cCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCc---chhhhhhcCCC
Q 038663 233 KFKIEEENELQRRATLAKRLRERTKKVLIILDDVRE---KINLAVSGIPY 279 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~---~~~~~~l~~~~ 279 (385)
.++-.....|.+.|+....||+|+.||+.- ...+..+...+
T Consensus 121 ------k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~L 164 (287)
T COG2607 121 ------KEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSAL 164 (287)
T ss_pred ------HHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHh
Confidence 011112344556666666999999999852 24455555554
No 196
>PRK04296 thymidine kinase; Provisional
Probab=97.32 E-value=0.00041 Score=60.14 Aligned_cols=109 Identities=17% Similarity=0.097 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCcccc---ccHHHHHHHHHHHHHh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIEE---ENELQRRATLAKRLRE 254 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 254 (385)
.++.|+|+.|+||||++..+..+.... -. .++.+.-+ +.+.....+++.++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~--~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GM--KVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CC--eEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 578899999999999999999887543 12 33333222 3333344455555543222 223344444444 22
Q ss_pred cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChh
Q 038663 255 RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLD 296 (385)
Q Consensus 255 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~ 296 (385)
++.-+||+|++.-. ++..++...+ ...|..||+|.+..+
T Consensus 77 -~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 -EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred -CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 14458999999643 2233332222 234778999998843
No 197
>PRK06921 hypothetical protein; Provisional
Probab=97.32 E-value=0.00092 Score=61.11 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS 219 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs 219 (385)
....+.++|++|+|||.|+..+.+.......+ .+++++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~---~v~y~~~~ 155 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGV---PVLYFPFV 155 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCc---eEEEEEHH
Confidence 35678999999999999999999987543122 45555543
No 198
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0098 Score=52.58 Aligned_cols=176 Identities=21% Similarity=0.251 Sum_probs=96.8
Q ss_pred chHHHHHHHHHHhc-------------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHH
Q 038663 161 SSSKALNSIMKLLK-------------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDK 227 (385)
Q Consensus 161 gr~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~ 227 (385)
|-+..+++|.+.+. =.+++-+.++||+|.|||-||+.|+++.. .-++.||...-+.+-
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~---------c~firvsgselvqk~ 221 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD---------CTFIRVSGSELVQKY 221 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc---------eEEEEechHHHHHHH
Confidence 44555666665543 12677899999999999999999998643 345566633332222
Q ss_pred HHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh-------------h---hhhcCCCC--CCCCCeEEE
Q 038663 228 IAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKIN-------------L---AVSGIPYG--EEGNRCKVI 289 (385)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~-------------~---~~l~~~~~--~~~~gs~ii 289 (385)
|-+ .......+.-.-+.. -+.+|+.|++.+... . -++...+. +..++.+||
T Consensus 222 ige----------gsrmvrelfvmareh-apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvi 290 (404)
T KOG0728|consen 222 IGE----------GSRMVRELFVMAREH-APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVI 290 (404)
T ss_pred hhh----------hHHHHHHHHHHHHhc-CCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEE
Confidence 211 111222232222332 677888898865310 0 11111111 124567888
Q ss_pred EeeCChhhhh--hc--C--CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChHHHHHHHHH
Q 038663 290 VTSRRLDVCS--KM--S--DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPSAIAIVAGA 356 (385)
Q Consensus 290 vTtr~~~v~~--~~--~--~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPlai~~~~~~ 356 (385)
+.|..-++.. .+ + ++.++++|-+++.-.++++-+.... ..-.+..++.++....|---.++-+=|++
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm 366 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGM 366 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhH
Confidence 8876665522 12 2 6789999999888778877665322 33455565555443333223333333433
No 199
>PRK06696 uridine kinase; Validated
Probab=97.31 E-value=0.00045 Score=61.54 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHhc---cCCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 161 SSSKALNSIMKLLK---DEKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 161 gr~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
.|...+++|.+.+. .+...+|+|.|++|+||||||+.+.+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35666777777664 456789999999999999999999998753
No 200
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0014 Score=62.35 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCcccccc-HHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFKIEEEN-ELQRRATLAKR 251 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~~~~~~-~~~~~~~l~~~ 251 (385)
+..++.++|+.|+||||++.++........... .+..++.. ...+-++...+.++.+..... ...+.. ....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~--~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~-~l~~ 212 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGAS--KVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQL-ALAE 212 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC--eEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHH-HHHH
Confidence 346999999999999999999998764321122 45555544 344555555666665433222 122222 2223
Q ss_pred HHhcCCcEEEEEeCCC
Q 038663 252 LRERTKKVLIILDDVR 267 (385)
Q Consensus 252 l~~~~kr~LlVlDdv~ 267 (385)
+. ++-+|+||..-
T Consensus 213 l~---~~DlVLIDTaG 225 (374)
T PRK14722 213 LR---NKHMVLIDTIG 225 (374)
T ss_pred hc---CCCEEEEcCCC
Confidence 33 34556688874
No 201
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.27 E-value=0.0005 Score=71.89 Aligned_cols=182 Identities=15% Similarity=0.144 Sum_probs=91.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH-hhhhCCCCCceEEEEEcC--CHHHHHHHHHHHhcCcc----ccccHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ-IDTIAPYDKAHVIVAESS--DLRRIQDKIAELLKFKI----EEENELQRRATLA 249 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~F~~~~~~wv~vs--~~~~l~~~i~~~l~~~~----~~~~~~~~~~~l~ 249 (385)
+..++.|+||.|.|||||.+.+.-. ...... .+++.. .....+.++...++... ...+-..-...+.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G------~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~ 394 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG------IPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNIS 394 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC------CCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHH
Confidence 4479999999999999999999865 221111 011111 00001111111111000 0000000111222
Q ss_pred HHHHhcCCcEEEEEeCCCcchh---hhhh----cCCCCCCCCCeEEEEeeCChhhhhhcC--Cce--EEcCCCCHHHHHH
Q 038663 250 KRLRERTKKVLIILDDVREKIN---LAVS----GIPYGEEGNRCKVIVTSRRLDVCSKMS--DVT--VQIEELGEEDRLK 318 (385)
Q Consensus 250 ~~l~~~~kr~LlVlDdv~~~~~---~~~l----~~~~~~~~~gs~iivTtr~~~v~~~~~--~~~--~~l~~L~~~~~~~ 318 (385)
..+.....+-|+++|+.-...+ -..+ ...+ ...|+.+|+||+...+..... ..+ ..+. ++.+ ...
T Consensus 395 ~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~ 470 (771)
T TIGR01069 395 AILSKTTENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS 470 (771)
T ss_pred HHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc
Confidence 2232222789999999875422 1112 1122 124788999999987644322 111 1111 1111 111
Q ss_pred HHHHhh--CCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhcCCCCCCcchhhhhhHHHHHHHHHh
Q 038663 319 LFKQIA--RLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALRGKLANESNESLVNIWNDAVEEVIR 382 (385)
Q Consensus 319 lf~~~~--~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~~~~~~~~~~~~W~~~~~~l~~ 382 (385)
|..++ |... ...|-.|++++ |+|-.|..-|.-+.... ..+.+.++++|+.
T Consensus 471 -p~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~--------~~~~~~li~~L~~ 522 (771)
T TIGR01069 471 -PTYKLLKGIPG----ESYAFEIAQRY-GIPHFIIEQAKTFYGEF--------KEEINVLIEKLSA 522 (771)
T ss_pred -eEEEECCCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHHhh--------HHHHHHHHHHHHH
Confidence 11111 3211 23456677766 89999999998887765 5788888888765
No 202
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.22 E-value=0.0036 Score=53.72 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+|.|+|++|+||||+++.+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999998764
No 203
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.21 E-value=0.0015 Score=55.92 Aligned_cols=74 Identities=27% Similarity=0.395 Sum_probs=42.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERT 256 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 256 (385)
....+.|+|++|+|||.||..+.+..-.. .+ .+.++.++ +++..+-. ....... ..+.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~---~v~f~~~~---~L~~~l~~----~~~~~~~----~~~~~~l~--- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK-GY---SVLFITAS---DLLDELKQ----SRSDGSY----EELLKRLK--- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT-T-----EEEEEHH---HHHHHHHC----CHCCTTH----CHHHHHHH---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC-Cc---ceeEeecC---ceeccccc----cccccch----hhhcCccc---
Confidence 34679999999999999999999886542 23 44555543 33333321 1111111 12233344
Q ss_pred CcEEEEEeCCCc
Q 038663 257 KKVLIILDDVRE 268 (385)
Q Consensus 257 kr~LlVlDdv~~ 268 (385)
+-=||||||+-.
T Consensus 108 ~~dlLilDDlG~ 119 (178)
T PF01695_consen 108 RVDLLILDDLGY 119 (178)
T ss_dssp TSSCEEEETCTS
T ss_pred cccEecccccce
Confidence 355778999864
No 204
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00073 Score=57.77 Aligned_cols=88 Identities=26% Similarity=0.338 Sum_probs=45.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcE
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKV 259 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~ 259 (385)
.|.|.|++|+||||+|+.+.+.+.. .|.+.+...|-.+....++...+...+... .-.+..-....+...+.....+-
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i-~hlstgd~~r~~~~~~t~lg~~~k~~i~~g-~lv~d~i~~~~v~~rl~~~d~~~ 79 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL-PHLDTGDILRAAIAERTELGEEIKKYIDKG-ELVPDEIVNGLVKERLDEADCKA 79 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-cEEcHhHHhHhhhccCChHHHHHHHHHHcC-CccchHHHHHHHHHHHHhhcccC
Confidence 4789999999999999999998542 233311122222222223333332222211 12233333345555555421222
Q ss_pred EEEEeCCCcc
Q 038663 260 LIILDDVREK 269 (385)
Q Consensus 260 LlVlDdv~~~ 269 (385)
.+|+|+.-..
T Consensus 80 ~~I~dg~PR~ 89 (178)
T COG0563 80 GFILDGFPRT 89 (178)
T ss_pred eEEEeCCCCc
Confidence 7888887644
No 205
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.18 E-value=0.0029 Score=58.40 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhh-CCCCCceEEEEEcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTI-APYDKAHVIVAESS 219 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~~~wv~vs 219 (385)
..+++.|+|++|+||||++..+....... ..+ .+..++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~---~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK---KVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC---eEEEEECC
Confidence 35799999999999999999999877543 222 45555555
No 206
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.18 E-value=0.004 Score=54.73 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHHHHHh----cCc------cccccHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKIAELL----KFK------IEEENELQR 244 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i~~~l----~~~------~~~~~~~~~ 244 (385)
...++.|+|++|+|||+|+.++....... -. .++|++.. +...+ .+++... ... ....+....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~--~v~yi~~e~~~~~rl-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ--GK--KVVYIDTEGLSPERF-KQIAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CC--eEEEEECCCCCHHHH-HHHHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 35799999999999999999988775432 34 77888886 33333 3333321 110 001112233
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCC
Q 038663 245 RATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 245 ~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
...+.+.+... +.-+||+|.+.
T Consensus 86 ~~~l~~~~~~~-~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRD-SASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhc-CccEEEEeCcH
Confidence 55555556552 45689999875
No 207
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.16 E-value=0.006 Score=54.83 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCcc-------------------
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKI------------------- 236 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~------------------- 236 (385)
...++.|.|++|+|||+|+.++....-.. -. ..+|++.. +...+.+.+. .++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge--~~lyvs~ee~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~~ 94 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GE--PGIYVALEEHPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGGI 94 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CC--cEEEEEeeCCHHHHHHHHH-HhCCCHHHHhhcCCEEEEecccccc
Confidence 45799999999999999999876553221 23 67788877 6777766543 222110
Q ss_pred ------------ccccHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 237 ------------EEENELQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 237 ------------~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
...+..+....+.+.+... +.-++|+|.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~vVIDSls~ 137 (237)
T TIGR03877 95 GEAAEREKYVVKDPTDVRELIDVLRQAIRDI-NAKRVVIDSVTT 137 (237)
T ss_pred ccccccccccccCcccHHHHHHHHHHHHHHh-CCCEEEEcChhH
Confidence 0123345566666666553 444799999754
No 208
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.14 E-value=0.00069 Score=67.21 Aligned_cols=49 Identities=29% Similarity=0.503 Sum_probs=42.0
Q ss_pred CCCCcchHHHHHHHHHHhc------cCCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 156 YVPLESSSKALNSIMKLLK------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
+.+++|.++.++.|++.|. +...+++.++||+|+||||||+.+.+-...
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3458899999999999883 455679999999999999999999987664
No 209
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.14 E-value=0.0039 Score=55.85 Aligned_cols=89 Identities=25% Similarity=0.290 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCC----CCCceEEEEEcC---CHHHHHHHHHHHhcCcc-------------
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAP----YDKAHVIVAESS---DLRRIQDKIAELLKFKI------------- 236 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~~~wv~vs---~~~~l~~~i~~~l~~~~------------- 236 (385)
...++.|+|++|+|||+|+.++......... .. .++|++.. +..+ +.++++..+...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~--~viyi~~e~~~~~~r-l~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEG--KAVYIDTEGTFRPER-LVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCc--cEEEEeCCCCcCHHH-HHHHHHHhccChHhHhcCEEEEecC
Confidence 3579999999999999999999855322111 23 77888876 2333 333444332211
Q ss_pred ccccHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 237 EEENELQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
...+.......+.+.+....+.-+||+|.+..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 01112233455666666533667999999853
No 210
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.0069 Score=57.02 Aligned_cols=86 Identities=9% Similarity=0.025 Sum_probs=47.1
Q ss_pred CcEEEEEeCCCcch--hhhhhcCCCCCCCCCeEEEEeeCCh-hhhhhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCcc
Q 038663 257 KKVLIILDDVREKI--NLAVSGIPYGEEGNRCKVIVTSRRL-DVCSKMS--DVTVQIEELGEEDRLKLFKQIARLPDSEA 331 (385)
Q Consensus 257 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 331 (385)
++=++++|++...+ .-..+...+.+...++.+|++|.+. .+...+. +..+.+.+++.++..+.+... |.. ..
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~-~~~--~~ 189 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER-GVA--EP 189 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc-CCC--cH
Confidence 34455667776432 2222222222222345566666654 4444433 788999999999999888654 321 11
Q ss_pred hHHHHHHHHHHhCCChHHH
Q 038663 332 FEGAAKVIVKACGSLPSAI 350 (385)
Q Consensus 332 ~~~~~~~I~~~c~GlPlai 350 (385)
. ..+..++|-|+..
T Consensus 190 --~---~~l~~~~g~p~~~ 203 (325)
T PRK08699 190 --E---ERLAFHSGAPLFD 203 (325)
T ss_pred --H---HHHHHhCCChhhh
Confidence 1 1235678888543
No 211
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=97.12 E-value=0.0026 Score=56.06 Aligned_cols=85 Identities=26% Similarity=0.422 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccHH----
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENEL---- 242 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~~---- 242 (385)
..-++|.|++|+|||+|+..+.+.... + ..+++.++ ...++.+++...-.. .....+..
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~~----d--~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQDA----D--VVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCTT----T--EEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcccc----c--ceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 357899999999999999999998752 2 56777777 444444444332111 01111111
Q ss_pred --HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 243 --QRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 243 --~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
...-.+-+++++.++..|+++||+..
T Consensus 89 ~~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 89 APYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hhccchhhhHHHhhcCCceeehhhhhHH
Confidence 12234456666555999999999853
No 212
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.12 E-value=0.0031 Score=57.62 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=64.5
Q ss_pred cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEE------cCCHHHHHHHHHHHhcC-----ccccccHHH
Q 038663 175 DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAE------SSDLRRIQDKIAELLKF-----KIEEENELQ 243 (385)
Q Consensus 175 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~------vs~~~~l~~~i~~~l~~-----~~~~~~~~~ 243 (385)
......++|+|++|+|||||.+.+....... . ..+++. +....++...+ ..+.. .....+...
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~--G~i~~~g~~v~~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~ 181 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILSTG---I--SQLGLRGKKVGIVDERSEIAGCV-NGVPQHDVGIRTDVLDGCP 181 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---C--ceEEECCEEeecchhHHHHHHHh-cccccccccccccccccch
Confidence 3446789999999999999999999876532 1 222221 11222332111 11111 001111111
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhh
Q 038663 244 RRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVC 298 (385)
Q Consensus 244 ~~~~l~~~l~~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~ 298 (385)
....+...+... .+=++++|++...+.+..+...+. .|..+|+||....+.
T Consensus 182 k~~~~~~~i~~~-~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 182 KAEGMMMLIRSM-SPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHHHHhC-CCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 233345555533 788999999987766665544432 467899999977663
No 213
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.11 E-value=0.0041 Score=53.79 Aligned_cols=52 Identities=27% Similarity=0.420 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCC------CCceEEEEEcC-CHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPY------DKAHVIVAESS-DLRRIQDKIAE 230 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~~~~~wv~vs-~~~~l~~~i~~ 230 (385)
.++.|+|++|+||||++..+.........| .+..+.|+... +...+.+.+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~ 91 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRA 91 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHH
Confidence 588999999999999999999887654334 23478888887 44455444443
No 214
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.006 Score=61.17 Aligned_cols=169 Identities=17% Similarity=0.235 Sum_probs=91.7
Q ss_pred CCCcchHH---HHHHHHHHhccCC---------ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHH
Q 038663 157 VPLESSSK---ALNSIMKLLKDEK---------VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRI 224 (385)
Q Consensus 157 ~~~~gr~~---~~~~l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l 224 (385)
.+.-|.++ ++.++++.|.++. ++-+.++||+|+|||.||+.+.-+..+- |- .++-|+..++
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--Ff-----~iSGS~FVem 222 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--FF-----SISGSDFVEM 222 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--ce-----eccchhhhhh
Confidence 34556554 5666666776532 4678999999999999999999887652 21 1111122221
Q ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------------hhhhhcCCCCC--CCCCe
Q 038663 225 QDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPYGE--EGNRC 286 (385)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~gs 286 (385)
+- .-......+.+.+..+. -+++|++|++.... .+..+...... .+.|.
T Consensus 223 fV-----------GvGAsRVRdLF~qAkk~--aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gv 289 (596)
T COG0465 223 FV-----------GVGASRVRDLFEQAKKN--APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGV 289 (596)
T ss_pred hc-----------CCCcHHHHHHHHHhhcc--CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCce
Confidence 11 11111222333344444 57999999986431 12222222211 22355
Q ss_pred EEEEeeCChhhhh--hc--C--CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChHH
Q 038663 287 KVIVTSRRLDVCS--KM--S--DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPSA 349 (385)
Q Consensus 287 ~iivTtr~~~v~~--~~--~--~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPla 349 (385)
.|+..|...+|.. .+ + ++.+.++.-+-..-.++++-++... ..-++.. |++.+-|.-.|
T Consensus 290 iviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~----iAr~tpGfsGA 357 (596)
T COG0465 290 IVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK----IARGTPGFSGA 357 (596)
T ss_pred EEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH----HhhhCCCcccc
Confidence 5555555555521 12 2 6677777777677777777666333 2222222 77777776554
No 215
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.11 E-value=0.00096 Score=58.92 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.+++.|+|+.|.|||||.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999999843
No 216
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.10 E-value=0.0041 Score=55.95 Aligned_cols=89 Identities=16% Similarity=0.301 Sum_probs=49.9
Q ss_pred HHHHHHHHhcc--CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHH
Q 038663 165 ALNSIMKLLKD--EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENEL 242 (385)
Q Consensus 165 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~ 242 (385)
.+..+.++..+ .....+.++|++|+|||+|+..+.+...... . .+++++++ +++..+-..... ...+
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~--~v~~it~~---~l~~~l~~~~~~--~~~~-- 152 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--K--SVLIITVA---DIMSAMKDTFSN--SETS-- 152 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--C--eEEEEEHH---HHHHHHHHHHhh--cccc--
Confidence 44444444432 2235789999999999999999999876432 2 44555443 333333322210 0111
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCcc
Q 038663 243 QRRATLAKRLRERTKKVLIILDDVREK 269 (385)
Q Consensus 243 ~~~~~l~~~l~~~~kr~LlVlDdv~~~ 269 (385)
...+.+.+. +.=+|||||+...
T Consensus 153 --~~~~l~~l~---~~dlLvIDDig~~ 174 (244)
T PRK07952 153 --EEQLLNDLS---NVDLLVIDEIGVQ 174 (244)
T ss_pred --HHHHHHHhc---cCCEEEEeCCCCC
Confidence 122333344 3458888998643
No 217
>PRK06547 hypothetical protein; Provisional
Probab=97.09 E-value=0.00087 Score=57.03 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=29.4
Q ss_pred HHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 168 SIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 168 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+...+......+|.|.|++|+||||||+.+.+...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445567788999999999999999999998754
No 218
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.09 E-value=0.0069 Score=53.89 Aligned_cols=84 Identities=27% Similarity=0.309 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHHHHH----hcCcc---cccc---HHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKIAEL----LKFKI---EEEN---ELQR 244 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i~~~----l~~~~---~~~~---~~~~ 244 (385)
...++.|+|++|+|||+|+.++....... -. .++|++.. +... +.++... +.... ...+ ....
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~--~v~yi~~e~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN--GK--KVIYIDTEGLSPER-FKQIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CC--eEEEEECCCCCHHH-HHHHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 35799999999999999999998876432 23 67888777 2222 2223222 10000 0111 1223
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCC
Q 038663 245 RATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 245 ~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
...+...+.. +.-++|+|.+.
T Consensus 97 i~~~~~~~~~--~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKE--NVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHh--cccEEEEeCcH
Confidence 3444444544 77799999974
No 219
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.09 E-value=0.087 Score=49.32 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=35.1
Q ss_pred eEEcCCCCHHHHHHHHHHhhCCC--C-CcchHHHHHHHHHHhCCChHHH
Q 038663 305 TVQIEELGEEDRLKLFKQIARLP--D-SEAFEGAAKVIVKACGSLPSAI 350 (385)
Q Consensus 305 ~~~l~~L~~~~~~~lf~~~~~~~--~-~~~~~~~~~~I~~~c~GlPlai 350 (385)
.+++++++.+|+..++....... . ....+...+++.-.++|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999999887433 2 2344566677777889999754
No 220
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.08 E-value=0.0012 Score=66.33 Aligned_cols=72 Identities=26% Similarity=0.454 Sum_probs=45.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHHHHhcCccccccHHHHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIAELLKFKIEEENELQRRATLAKRLR 253 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 253 (385)
.-++..++|++|+||||||+.++++.. | .++=+..| +...+-..|...+. ....+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y---sVvEINASDeRt~~~v~~kI~~avq--------------~~s~l~ 383 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y---SVVEINASDERTAPMVKEKIENAVQ--------------NHSVLD 383 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c---eEEEecccccccHHHHHHHHHHHHh--------------hccccc
Confidence 457999999999999999999998765 4 45556666 22222222222221 112222
Q ss_pred hcCCcEEEEEeCCCcc
Q 038663 254 ERTKKVLIILDDVREK 269 (385)
Q Consensus 254 ~~~kr~LlVlDdv~~~ 269 (385)
.++++.-||+|++.-.
T Consensus 384 adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGA 399 (877)
T ss_pred cCCCcceEEEecccCC
Confidence 1227778999998743
No 221
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.08 E-value=0.0045 Score=60.43 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=36.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF 234 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~ 234 (385)
.+.++.++|++|+||||++..++..+... .+ .+..++.. ...+.+..+...++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~---kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL---KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC---eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 46799999999999999999999887643 23 33444444 223445556666554
No 222
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.08 E-value=0.0026 Score=59.16 Aligned_cols=134 Identities=17% Similarity=0.330 Sum_probs=73.5
Q ss_pred CCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHH--HHHHhhhhCCCCCceEEE---EEcC------------C
Q 038663 158 PLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQ--LAKQIDTIAPYDKAHVIV---AESS------------D 220 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~--v~~~~~~~~~F~~~~~~w---v~vs------------~ 220 (385)
++-+|..+-.--.++|.++....|.+.|.+|+|||.||-. +++-... ..|.. .++. +.++ .
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~-~~y~K-iiVtRp~vpvG~dIGfLPG~eEeK 302 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER-KRYRK-IIVTRPTVPVGEDIGFLPGTEEEK 302 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH-hhhce-EEEecCCcCcccccCcCCCchhhh
Confidence 3456666666667888899999999999999999976654 4443332 23331 1111 1121 1
Q ss_pred HHHHHHHHHHHhcC--ccccccHHHHHHHH----------HHHHHhcC-CcEEEEEeCCCcch--hhhhhcCCCCCCCCC
Q 038663 221 LRRIQDKIAELLKF--KIEEENELQRRATL----------AKRLRERT-KKVLIILDDVREKI--NLAVSGIPYGEEGNR 285 (385)
Q Consensus 221 ~~~l~~~i~~~l~~--~~~~~~~~~~~~~l----------~~~l~~~~-kr~LlVlDdv~~~~--~~~~l~~~~~~~~~g 285 (385)
+.-.++.|.+.+.. ...... ......+ ..+++++. .+-+||+|+..+.. +...+ +...+.|
T Consensus 303 m~PWmq~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~G~G 378 (436)
T COG1875 303 MGPWMQAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRAGEG 378 (436)
T ss_pred ccchHHHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhccCC
Confidence 22234444444432 111111 2122222 12334410 23579999998653 44444 3345789
Q ss_pred eEEEEeeCChhh
Q 038663 286 CKVIVTSRRLDV 297 (385)
Q Consensus 286 s~iivTtr~~~v 297 (385)
|||+.|.....+
T Consensus 379 sKIVl~gd~aQi 390 (436)
T COG1875 379 SKIVLTGDPAQI 390 (436)
T ss_pred CEEEEcCCHHHc
Confidence 999998865543
No 223
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.031 Score=56.49 Aligned_cols=167 Identities=15% Similarity=0.156 Sum_probs=88.4
Q ss_pred CcchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHH
Q 038663 159 LESSSKALNSIMKLLKD-------------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQ 225 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~ 225 (385)
+-|..+..+-|.+.+.- ....-|.++|++|+|||-||..+..... +. +++|...+ ++
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~----~~-----fisvKGPE-lL 738 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN----LR-----FISVKGPE-LL 738 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC----ee-----EEEecCHH-HH
Confidence 44555555555555531 1234689999999999999999987654 22 34444332 22
Q ss_pred HHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-------------hhhhhcCCCC--CCCCCeEEEE
Q 038663 226 DKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI-------------NLAVSGIPYG--EEGNRCKVIV 290 (385)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-------------~~~~l~~~~~--~~~~gs~iiv 290 (385)
..-+ + .+++. ...+.+.-+.. ++|+++||+..+.. ..+.+...+. ++-.|.-|+.
T Consensus 739 ~KyI---G-----aSEq~-vR~lF~rA~~a-~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~a 808 (952)
T KOG0735|consen 739 SKYI---G-----ASEQN-VRDLFERAQSA-KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILA 808 (952)
T ss_pred HHHh---c-----ccHHH-HHHHHHHhhcc-CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEE
Confidence 2111 1 12222 23333333332 99999999986541 1222222221 1234655554
Q ss_pred -eeCChhhhhh-c--C--CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChHH
Q 038663 291 -TSRRLDVCSK-M--S--DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPSA 349 (385)
Q Consensus 291 -Ttr~~~v~~~-~--~--~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPla 349 (385)
|||..-+-.. + + ++.+.-+.-++.+-.++|+...... ...+ .+-++.+++|+.-|
T Consensus 809 aTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vd----l~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 809 ATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVD----LECLAQKTDGFTGA 872 (952)
T ss_pred ecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccc----hHHHhhhcCCCchh
Confidence 5555543211 1 1 4444445556677778887766422 2222 34467777777654
No 224
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.05 E-value=0.0087 Score=52.97 Aligned_cols=85 Identities=21% Similarity=0.171 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHH----hcCcc---ccccHHH---HH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAEL----LKFKI---EEENELQ---RR 245 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~----l~~~~---~~~~~~~---~~ 245 (385)
...++.|+|++|+|||||+.++....... . . .++|++.. ...+-+.++... +.... ...+..+ ..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g-~--~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ-G-K--KVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAI 93 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-C-C--eEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHH
Confidence 45799999999999999999998876432 1 2 56777665 222333333322 11111 0111112 23
Q ss_pred HHHHHHHHhcCCcEEEEEeCCC
Q 038663 246 ATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 246 ~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
..+...+.. +.-++|+|-+.
T Consensus 94 ~~~~~~~~~--~~~lvvIDsi~ 113 (218)
T cd01394 94 QETETFADE--KVDLVVVDSAT 113 (218)
T ss_pred HHHHHHHhc--CCcEEEEechH
Confidence 344444554 56789999874
No 225
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.03 E-value=0.012 Score=55.54 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=31.0
Q ss_pred cchHHHHHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 160 ESSSKALNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 160 ~gr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+|+...+..+.+.+. .....-|.|+|..|+||+++|+.+++...
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 455555555555543 22335679999999999999999987643
No 226
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.02 E-value=0.0088 Score=56.92 Aligned_cols=96 Identities=20% Similarity=0.309 Sum_probs=52.7
Q ss_pred HHHHHHHHhccC----CceEEEEEcCCCCchH-HHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCc
Q 038663 165 ALNSIMKLLKDE----KVNIIGVQGPGGVGKS-TLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFK 235 (385)
Q Consensus 165 ~~~~l~~~L~~~----~~~vi~I~G~~GiGKT-tLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~ 235 (385)
....+..++.++ +.++++++||.|+||| |||+.-+.-.....+ . .+..++.. ...+-++.-++-++.+
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~--kVaiITtDtYRIGA~EQLk~Ya~im~vp 262 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKK-K--KVAIITTDTYRIGAVEQLKTYADIMGVP 262 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccC-c--ceEEEEeccchhhHHHHHHHHHHHhCCc
Confidence 344444444443 4789999999999998 555554444412222 2 56666665 5555566666667665
Q ss_pred ccccc-HHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 236 IEEEN-ELQRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 236 ~~~~~-~~~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
..... ..++...+ ..+++ . =+|.+|=+-
T Consensus 263 ~~vv~~~~el~~ai-~~l~~--~-d~ILVDTaG 291 (407)
T COG1419 263 LEVVYSPKELAEAI-EALRD--C-DVILVDTAG 291 (407)
T ss_pred eEEecCHHHHHHHH-HHhhc--C-CEEEEeCCC
Confidence 54332 33333332 23333 3 455566553
No 227
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=97.02 E-value=0.0046 Score=60.54 Aligned_cols=88 Identities=24% Similarity=0.306 Sum_probs=57.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
...-++|+|.+|+|||||+..+....... +-+ .++++.++ ...+++..+...-.. .....+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~d--v~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSG--SSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCC--EEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 34578999999999999999998887643 445 77777777 445555555443211 1111111
Q ss_pred --HHHHHHHHHHHHhc-CCcEEEEEeCCC
Q 038663 242 --LQRRATLAKRLRER-TKKVLIILDDVR 267 (385)
Q Consensus 242 --~~~~~~l~~~l~~~-~kr~LlVlDdv~ 267 (385)
....-.+-+++++. ++++|+++|++-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 12344566777654 599999999984
No 228
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.00 E-value=0.0075 Score=53.93 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKI 228 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i 228 (385)
..++.|.|++|+|||||+.++....... . . .+++++.. +..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g-~--~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN-G-Y--SVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC-C-C--cEEEEeCCCCHHHHHHHH
Confidence 4599999999999999986666554221 2 2 55666665 666776666
No 229
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.00 E-value=0.0034 Score=60.80 Aligned_cols=86 Identities=20% Similarity=0.334 Sum_probs=53.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
....++|+|+.|+|||||++.+..... .+ ..+..-++ ...++...++..-+. ...+.+.
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d--v~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----AD--VIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CC--EEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 446899999999999999999986432 23 55556666 444445544333111 1111111
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
....-.+-+++++.++++|+++||+-.
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 112344667776666999999999854
No 230
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.99 E-value=0.004 Score=56.57 Aligned_cols=91 Identities=23% Similarity=0.251 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh--hCCCCCceEEEEEcC----CHHHHHHHHHHHhcCc-------cccccH--
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT--IAPYDKAHVIVAESS----DLRRIQDKIAELLKFK-------IEEENE-- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~-------~~~~~~-- 241 (385)
...-++|.|.+|+|||+|+..+.+.... ..+-+ .++++.++ ...+++..+...-... ....+.
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~--v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~ 145 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENF--AVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIE 145 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCC--EEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHH
Confidence 3456799999999999999998877541 11234 77788887 5555555554432110 111111
Q ss_pred ----HHHHHHHHHHHHhc-CCcEEEEEeCCCcc
Q 038663 242 ----LQRRATLAKRLRER-TKKVLIILDDVREK 269 (385)
Q Consensus 242 ----~~~~~~l~~~l~~~-~kr~LlVlDdv~~~ 269 (385)
....-.+-+++++. ++++|+++||+...
T Consensus 146 r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 146 RIITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 11234566777765 59999999998643
No 231
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.99 E-value=0.0022 Score=54.72 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
+..+|.|.|++|+||||+++.+++.+..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999998864
No 232
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.98 E-value=0.0049 Score=52.94 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=32.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKI 228 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i 228 (385)
++.|.|++|+|||+|+.++....-... . .+.|++.. +...+...+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g--~--~v~~~s~e~~~~~~~~~~ 46 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG--E--PGLYVTLEESPEELIENA 46 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC--C--cEEEEECCCCHHHHHHHH
Confidence 368999999999999999877643221 2 66788887 666665543
No 233
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.98 E-value=0.028 Score=46.29 Aligned_cols=113 Identities=10% Similarity=0.073 Sum_probs=74.6
Q ss_pred CcHHHHHHHHHHHHHHHHHhHHHHHHHHHhchhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhchHHHHHHHH
Q 038663 1 MCWEWILANIVTPVASRTTDLFGNSVEEQIRYLLDYDDNLEAFRTRAGQLEARKNDVLGRVDEARDNNEKIKEAVLLWLA 80 (385)
Q Consensus 1 ~~me~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~ 80 (385)
|+-|.+.+++++.+++.+...+.....+... -+.-++.|.+.++.+.-.+++-+..+...+..-+.=++
T Consensus 1 ~~~eL~~gaalG~~~~eLlk~v~~~~~k~~~-----------fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e 69 (147)
T PF05659_consen 1 PIAELVGGAALGAVFGELLKAVIDASKKSLS-----------FKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIE 69 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHH
Confidence 3456677778888888887777776554433 24555666666666666666666555444444456678
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcccccChHHHHHhhHHHHHHHHHHHHH
Q 038663 81 KAIQIEIDKEMMEEKIEKNKGPCHTWRLDWRFRRQLSELANVKITKIDEL 130 (385)
Q Consensus 81 ~lr~~a~d~ed~id~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~~ 130 (385)
++.+...+++++++.|..- . ..|+...++.+++|++.-+.+...
T Consensus 70 ~L~~~L~~g~~LV~k~sk~----~--r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 70 RLKELLEKGKELVEKCSKV----R--RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHHHHHHHHHHHhccc----c--HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 8888999999999977332 1 126666777888887766666554
No 234
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.0041 Score=61.50 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
..+++|+|++|+||||++..+......
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999876543
No 235
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.96 E-value=0.011 Score=52.98 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccc------------------
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIE------------------ 237 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~------------------ 237 (385)
...++.|+|++|+|||+|+.++....-.. =. .++|++.. +...+.+++ .+++....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~--~~~y~~~e~~~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GK--KVYVITTENTSKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CC--EEEEEEcCCCHHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 45799999999999999999996553211 12 77888888 666666664 33332110
Q ss_pred ---cccHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 238 ---EENELQRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 238 ---~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
......+...+.+.+... +.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~-~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSK-REDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhc-CCCEEEEecHH
Confidence 112244566666666652 45589999975
No 236
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.96 E-value=0.014 Score=57.29 Aligned_cols=48 Identities=29% Similarity=0.468 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhc-----cCC--ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEE
Q 038663 163 SKALNSIMKLLK-----DEK--VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVA 216 (385)
Q Consensus 163 ~~~~~~l~~~L~-----~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv 216 (385)
...++++..||. .++ .+++.|.||+|+||||.++.+...+.. . .+=|.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~----~--~~Ew~ 142 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGY----Q--LIEWS 142 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCc----e--eeeec
Confidence 456778888887 333 459999999999999999999988763 3 55565
No 237
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.96 E-value=0.0022 Score=60.93 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=64.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHH-HHHHHHhcCccccccHHHHHHHHHHHHHhc
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQ-DKIAELLKFKIEEENELQRRATLAKRLRER 255 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~-~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 255 (385)
....+.|.|+.|+||||+++.+...... +.. ..++. +.+..+.. ......+...............+...|+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~--~~~--~~i~t-iEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~- 194 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINK--NAA--GHIIT-IEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALRE- 194 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCc--CCC--CEEEE-EcCChhhhccCccceEEccccCCCCcCHHHHHHHhhcc-
Confidence 3478999999999999999998876542 233 33333 33222221 11000000000011122345667777877
Q ss_pred CCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhh
Q 038663 256 TKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCS 299 (385)
Q Consensus 256 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~ 299 (385)
.+=+|++|++.+.+.+...... ...|..++.|....+...
T Consensus 195 -~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 195 -DPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred -CCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCHHH
Confidence 8889999999877665532221 223555788887766543
No 238
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.96 E-value=0.00072 Score=58.83 Aligned_cols=25 Identities=48% Similarity=0.914 Sum_probs=23.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
||+|.|++|+||||||+.+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6899999999999999999999874
No 239
>PRK14974 cell division protein FtsY; Provisional
Probab=96.95 E-value=0.018 Score=54.35 Aligned_cols=54 Identities=26% Similarity=0.322 Sum_probs=36.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF 234 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~ 234 (385)
+..++.++|++|+||||++..++..+... .+. ++.+... ...+-+......++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~~---V~li~~Dt~R~~a~eqL~~~a~~lgv 196 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFS---VVIAAGDTFRAGAIEQLEEHAERLGV 196 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCe---EEEecCCcCcHHHHHHHHHHHHHcCC
Confidence 46799999999999999999998877643 233 3334333 233345556666664
No 240
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.0012 Score=54.36 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYD 209 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 209 (385)
.-|.|.||+|+||||+++.+.+.++... |.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g-~k 35 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG-YK 35 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC-ce
Confidence 4689999999999999999999987653 44
No 241
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.94 E-value=0.0041 Score=60.41 Aligned_cols=86 Identities=22% Similarity=0.342 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
....++|+|+.|+|||||++.+...... + ..+...++ ...++..+.+..-+. ...+.+.
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~----d--~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA----D--VSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC----C--EEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 4568899999999999999999976542 2 44556666 444444433332211 1111111
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
....-.+-+++++.++++|+++||+-.
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 122345667776666999999999853
No 242
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.93 E-value=0.031 Score=52.31 Aligned_cols=83 Identities=23% Similarity=0.271 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCcc------ccccHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKI------EEENELQRRATLA 249 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~------~~~~~~~~~~~l~ 249 (385)
..+++-|+|++|+|||||+.+++...... -. .++|+... .... ..++.++... ...+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~--~~vyId~E~~~~~---~~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GG--TVAFIDAEHALDP---VYAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CC--CEEEECccccHHH---HHHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 45799999999999999999988765432 22 66788776 2221 2344444311 1112344445555
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 038663 250 KRLRERTKKVLIILDDVR 267 (385)
Q Consensus 250 ~~l~~~~kr~LlVlDdv~ 267 (385)
..++.. .--+||+|-|-
T Consensus 127 ~li~s~-~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSG-AVDLIVVDSVA 143 (325)
T ss_pred HHHhcc-CCCEEEEcchH
Confidence 555442 66789999874
No 243
>PRK04040 adenylate kinase; Provisional
Probab=96.92 E-value=0.003 Score=54.59 Aligned_cols=26 Identities=27% Similarity=0.594 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|.|+|++|+||||+++.+.+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999999874
No 244
>PRK08149 ATP synthase SpaL; Validated
Probab=96.92 E-value=0.0031 Score=61.12 Aligned_cols=86 Identities=16% Similarity=0.326 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
....++|+|++|+|||||++.+...... + ..+...+. +..++.......... ...+.+.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~~----d--v~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSEA----D--VFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCCC----C--eEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 4468899999999999999998875432 2 33333343 666666666554321 1111111
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
......+.+++++.++++||++||+-.
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 123445667776666999999999854
No 245
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.92 E-value=0.0077 Score=51.19 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=22.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
++.++|++|+||||++..+......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999988764
No 246
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.92 E-value=0.0046 Score=53.02 Aligned_cols=116 Identities=21% Similarity=0.353 Sum_probs=60.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEE--EcC--CHHHH------HHHHHHHhcCc------ccccc
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVA--ESS--DLRRI------QDKIAELLKFK------IEEEN 240 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv--~vs--~~~~l------~~~i~~~l~~~------~~~~~ 240 (385)
+..+++|+|+.|+|||||++.+.-.... .. +.+.|- .+. +.... ..++++.++.. ....+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~-G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SS-GEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CC-cEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 4569999999999999999999875432 22 123221 222 11111 12234444331 11112
Q ss_pred H-HHHHHHHHHHHHhcCCcEEEEEeCCCcchh---hhhhcCCCCC--CCCCeEEEEeeCChhhh
Q 038663 241 E-LQRRATLAKRLRERTKKVLIILDDVREKIN---LAVSGIPYGE--EGNRCKVIVTSRRLDVC 298 (385)
Q Consensus 241 ~-~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~---~~~l~~~~~~--~~~gs~iivTtr~~~v~ 298 (385)
. ....-.+.+.+-. .+-++++|+....-+ ...+...+.. ...+..||++|+.....
T Consensus 100 ~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQ--EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2 2223345555666 788999999754321 1222111111 11155678888776654
No 247
>PRK07667 uridine kinase; Provisional
Probab=96.90 E-value=0.0016 Score=56.58 Aligned_cols=38 Identities=26% Similarity=0.574 Sum_probs=29.3
Q ss_pred HHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 167 NSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 167 ~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
+.|.+.+. .++..+|+|.|++|+||||+|+.+.+.+..
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34445443 234579999999999999999999998753
No 248
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0071 Score=58.60 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
+..+++++|+.|+||||++..+....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999888754
No 249
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.90 E-value=0.0017 Score=58.12 Aligned_cols=29 Identities=41% Similarity=0.728 Sum_probs=25.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
+...+++|.|++|+|||||++.+......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45679999999999999999999988764
No 250
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.045 Score=48.84 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=44.3
Q ss_pred cCCCCCCCCCCCcchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 148 LGDLATPDYVPLESSSKALNSIMKLLKD-------------EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 148 ~~~~~~~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
++..|+..+.++-|-++.+++|++.+.= ..++-+..+||+|.|||-+|+.......
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 3456677778888999999999987641 2456789999999999999999876644
No 251
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.88 E-value=0.00087 Score=54.92 Aligned_cols=24 Identities=50% Similarity=0.756 Sum_probs=21.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999987654
No 252
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.88 E-value=0.018 Score=60.19 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=36.8
Q ss_pred CCCCcchHHHHHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 156 YVPLESSSKALNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+..++|+...+..+.+.+. ......|.|+|+.|+|||++|+.+++...
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 3457888888777766554 23345788999999999999999998653
No 253
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.88 E-value=0.0026 Score=53.68 Aligned_cols=113 Identities=21% Similarity=0.232 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEc---C--CHHHHHHHHHHHhcCccccccHHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAES---S--DLRRIQDKIAELLKFKIEEENELQRRATLAKR 251 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~v---s--~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~ 251 (385)
...+++|+|+.|+|||||.+.+.-.... .. ..+++.- . +..... ...++....-.......-.+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~--G~v~~~g~~~~~~~~~~~~---~~~i~~~~qLS~G~~qrl~lara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP---DS--GEILVDGKEVSFASPRDAR---RAGIAMVYQLSVGERQMVEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CC--eEEEECCEECCcCCHHHHH---hcCeEEEEecCHHHHHHHHHHHH
Confidence 3468999999999999999999865431 22 3333321 1 111111 11111111111122223344555
Q ss_pred HHhcCCcEEEEEeCCCcchh---hhhhcCCCCC-CCCCeEEEEeeCChhhhh
Q 038663 252 LRERTKKVLIILDDVREKIN---LAVSGIPYGE-EGNRCKVIVTSRRLDVCS 299 (385)
Q Consensus 252 l~~~~kr~LlVlDdv~~~~~---~~~l~~~~~~-~~~gs~iivTtr~~~v~~ 299 (385)
+-. ++-++++|+....-+ ...+...+.. ...+..||++|+......
T Consensus 97 l~~--~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 97 LAR--NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred Hhc--CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 556 788999999754321 1111111111 122556788887766433
No 254
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.0065 Score=58.40 Aligned_cols=87 Identities=14% Similarity=0.251 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCcccccc-HHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFKIEEEN-ELQRRATLAKR 251 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~~~~~~-~~~~~~~l~~~ 251 (385)
..+++.++|+.|+||||.+..+...+.....-.+..+..++.. ...+-++..++.++.+..... ...+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~- 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-
Confidence 3579999999999999999999887653210011145556665 233345556666655433222 2222222222
Q ss_pred HHhcCCcEEEEEeCCC
Q 038663 252 LRERTKKVLIILDDVR 267 (385)
Q Consensus 252 l~~~~kr~LlVlDdv~ 267 (385)
+ . +.-+|++|..-
T Consensus 252 ~-~--~~DlVLIDTaG 264 (388)
T PRK12723 252 S-K--DFDLVLVDTIG 264 (388)
T ss_pred h-C--CCCEEEEcCCC
Confidence 2 2 45678888764
No 255
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.87 E-value=0.001 Score=69.85 Aligned_cols=181 Identities=18% Similarity=0.230 Sum_probs=91.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHH-hhhh-CCCCCc---------eEEEEEcCCHHHHHHHHHHHhcCccccccHHHH
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQ-IDTI-APYDKA---------HVIVAESSDLRRIQDKIAELLKFKIEEENELQR 244 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~-~~~~-~~F~~~---------~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~ 244 (385)
++.+++.|.||.+.||||+.+.+.-. +..+ ..|-++ ..++..+++...+...+ .+-..-
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~l----------StfS~~ 394 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSL----------STFSGH 394 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhch----------hHHHHH
Confidence 34578999999999999999998743 1111 111100 11222222111111100 000001
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCcchhh---hhh----cCCCCCCCCCeEEEEeeCChhhhhhcC--Cce--EEcCCCCH
Q 038663 245 RATLAKRLRERTKKVLIILDDVREKINL---AVS----GIPYGEEGNRCKVIVTSRRLDVCSKMS--DVT--VQIEELGE 313 (385)
Q Consensus 245 ~~~l~~~l~~~~kr~LlVlDdv~~~~~~---~~l----~~~~~~~~~gs~iivTtr~~~v~~~~~--~~~--~~l~~L~~ 313 (385)
...+...+..-..+-|+++|+.....+. ..+ ...+ ...|+.+|+||+...+..... ..+ ..+. ++.
T Consensus 395 m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~ 471 (782)
T PRK00409 395 MTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYL--RKRGAKIIATTHYKELKALMYNREGVENASVE-FDE 471 (782)
T ss_pred HHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec
Confidence 1112222222126789999998754221 112 1112 124778999999987755433 111 1111 111
Q ss_pred HHHHHH-HHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhcCCCCCCcchhhhhhHHHHHHHHHhh
Q 038663 314 EDRLKL-FKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALRGKLANESNESLVNIWNDAVEEVIRE 383 (385)
Q Consensus 314 ~~~~~l-f~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~~~~~~~~~~~~W~~~~~~l~~~ 383 (385)
+.... |+-..|... ...|-.|++++ |+|-.+..-|.-+.... ..+.+.+++.|+.+
T Consensus 472 -~~l~~~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~--------~~~~~~li~~l~~~ 528 (782)
T PRK00409 472 -ETLRPTYRLLIGIPG----KSNAFEIAKRL-GLPENIIEEAKKLIGED--------KEKLNELIASLEEL 528 (782)
T ss_pred -CcCcEEEEEeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHhhh--------hhHHHHHHHHHHHH
Confidence 11111 111113221 23456677766 89999999988887766 56888888887653
No 256
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.87 E-value=0.0051 Score=62.26 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=38.5
Q ss_pred CCCCCcchHHHHHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 155 DYVPLESSSKALNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
....++|....+.++.+.+. ......|.|+|++|+|||++|+.+++...
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 34568899888888887765 23345678999999999999999998743
No 257
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.87 E-value=0.00091 Score=53.53 Aligned_cols=22 Identities=41% Similarity=0.797 Sum_probs=20.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHh
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~ 202 (385)
|.|.|++|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 258
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.87 E-value=0.0011 Score=58.31 Aligned_cols=27 Identities=33% Similarity=0.614 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.+..+|+|.|++|+|||||++.+...+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999986
No 259
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.87 E-value=0.0072 Score=53.83 Aligned_cols=85 Identities=15% Similarity=0.299 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH-hhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCc---------------cc--
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ-IDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFK---------------IE-- 237 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~---------------~~-- 237 (385)
...++.|.|++|+|||+|+.++... .+... . .+++++.. +...+.+.+. .++.. ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~g--e--~vlyvs~ee~~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFG--E--KVLYVSFEEPPEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------EEEEESSS-HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcC--C--cEEEEEecCCHHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 4579999999999999999986654 34301 1 67788888 6666555543 33221 00
Q ss_pred ----cccHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 238 ----EENELQRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 238 ----~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
..+...+...+.+.++.. +.-.+|||.+.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~-~~~~vVIDsls 125 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEEL-KPDRVVIDSLS 125 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHH-TSSEEEEETHH
T ss_pred ccccccCHHHHHHHHHHHHHhc-CCCEEEEECHH
Confidence 124566677777777764 56899999864
No 260
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.86 E-value=0.0017 Score=53.52 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=35.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCcc
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKI 236 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~ 236 (385)
+|.|.|++|+||||+|+.+.++..-. |- +.-.++++|++..+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~v----------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--LV----------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--ee----------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999987622 21 23467888888887643
No 261
>PRK08233 hypothetical protein; Provisional
Probab=96.86 E-value=0.001 Score=57.02 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|+|.|++|+||||||+.+...+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 262
>PTZ00301 uridine kinase; Provisional
Probab=96.85 E-value=0.0011 Score=58.25 Aligned_cols=26 Identities=31% Similarity=0.662 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+.+|+|.|++|+||||||+.+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 263
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.85 E-value=0.0012 Score=58.14 Aligned_cols=28 Identities=36% Similarity=0.578 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+...+|+|+|++|+|||||++.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998765
No 264
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.0081 Score=57.05 Aligned_cols=86 Identities=19% Similarity=0.171 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCccc-cccHHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFKIE-EENELQRRATLAKR 251 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~~~-~~~~~~~~~~l~~~ 251 (385)
+.++++|+|+.|+||||++..+........ . .+.+++.. ...+-++...+.++.+.. ..+..++...+. .
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~--~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~-~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--R--TVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQ-Y 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--C--eEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHH-H
Confidence 457999999999999999999987764332 2 45566665 334455666666654332 223344433333 3
Q ss_pred HHhcCCcEEEEEeCCC
Q 038663 252 LRERTKKVLIILDDVR 267 (385)
Q Consensus 252 l~~~~kr~LlVlDdv~ 267 (385)
+......=+|++|-.-
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 3311144577788664
No 265
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.84 E-value=0.0088 Score=57.31 Aligned_cols=85 Identities=24% Similarity=0.296 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccccc--cHHHHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIEEE--NELQRRATLAKRLRE 254 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 254 (385)
..++.|.|++|+|||||+.++....... -. .++|++.. +...+ ..-+..++...... ........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~--~VlYvs~EEs~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GG--KVLYVSGEESPEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CC--eEEEEECCcCHHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4699999999999999999999876532 23 66777766 44333 22344554322111 011122344444443
Q ss_pred cCCcEEEEEeCCCc
Q 038663 255 RTKKVLIILDDVRE 268 (385)
Q Consensus 255 ~~kr~LlVlDdv~~ 268 (385)
. +.-+||+|.+..
T Consensus 157 ~-~~~lVVIDSIq~ 169 (372)
T cd01121 157 L-KPDLVIIDSIQT 169 (372)
T ss_pred c-CCcEEEEcchHH
Confidence 2 677899999853
No 266
>PRK10867 signal recognition particle protein; Provisional
Probab=96.84 E-value=0.01 Score=57.86 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
.+.+|.++|++|+||||++..++..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4679999999999999988888876654
No 267
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=96.83 E-value=0.0082 Score=58.80 Aligned_cols=91 Identities=19% Similarity=0.233 Sum_probs=57.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH-----
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE----- 241 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~----- 241 (385)
..-++|.|..|+|||||+..+.+.....+.+.+..++++.++ ...+++..+...-.. .....+.
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 457899999999999999999987654322333356667776 455555555433211 1111111
Q ss_pred -HHHHHHHHHHHH-hcCCcEEEEEeCCCc
Q 038663 242 -LQRRATLAKRLR-ERTKKVLIILDDVRE 268 (385)
Q Consensus 242 -~~~~~~l~~~l~-~~~kr~LlVlDdv~~ 268 (385)
......+-++++ +.++++||++||+-.
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 122445778888 456999999999853
No 268
>PTZ00494 tuzin-like protein; Provisional
Probab=96.82 E-value=0.15 Score=49.36 Aligned_cols=160 Identities=6% Similarity=0.040 Sum_probs=96.9
Q ss_pred CCCCcchHHHHHHHHHHhc---cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHh
Q 038663 156 YVPLESSSKALNSIMKLLK---DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELL 232 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l 232 (385)
...++.|+.+-..+...|. ..+++++.+.|..|+||++|.+........ ..++|.+...++-++.+.+.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-------paV~VDVRg~EDtLrsVVKAL 442 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-------ALVHVDVGGTEDTLRSVVRAL 442 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-------CeEEEEecCCcchHHHHHHHh
Confidence 3457788877766666664 357899999999999999999987765442 567788888888889999999
Q ss_pred cCccccccHHHHHHHHHHHHH-----hcCCcEEEEEe--CCCcch-hhhhhcCCCCCCCCCeEEEEeeCChhhhhh---c
Q 038663 233 KFKIEEENELQRRATLAKRLR-----ERTKKVLIILD--DVREKI-NLAVSGIPYGEEGNRCKVIVTSRRLDVCSK---M 301 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~-----~~~kr~LlVlD--dv~~~~-~~~~l~~~~~~~~~gs~iivTtr~~~v~~~---~ 301 (385)
+.+..+. ...+++-+.+... .+++.-+||+- +-.+.. .+.+. ..+.....-|.|++---.+.+... +
T Consensus 443 gV~nve~-CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n~~L 520 (664)
T PTZ00494 443 GVSNVEV-CGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLNVSS 520 (664)
T ss_pred CCCChhh-hccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhhccC
Confidence 8643221 1222222222211 11244555543 221111 11111 122223344666665544443211 1
Q ss_pred C-CceEEcCCCCHHHHHHHHHHhh
Q 038663 302 S-DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 302 ~-~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
. -..|.+++++.+++.++.++.+
T Consensus 521 PRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 521 RRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccceeEecCCcCHHHHHHHHhccc
Confidence 2 5678999999999999888765
No 269
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0065 Score=52.20 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
+.|.+.|.+|+||||+|+.+.+.++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467889999999999999999988743
No 270
>PRK04328 hypothetical protein; Provisional
Probab=96.82 E-value=0.015 Score=52.63 Aligned_cols=85 Identities=12% Similarity=0.200 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCcc-------------------
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKI------------------- 236 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~------------------- 236 (385)
...++.|.|++|+|||+|+.++....-.. -. ..+|++.. +...+.+. ++.++...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge--~~lyis~ee~~~~i~~~-~~~~g~d~~~~~~~~~l~iid~~~~~~ 96 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GE--PGVYVALEEHPVQVRRN-MRQFGWDVRKYEEEGKFAIVDAFTGGI 96 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CC--cEEEEEeeCCHHHHHHH-HHHcCCCHHHHhhcCCEEEEecccccc
Confidence 45799999999999999999977653211 23 56788776 55555443 33333210
Q ss_pred ------------ccccHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 237 ------------EEENELQRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 237 ------------~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
...+.......+.+.++.. +.-++|+|.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~vVIDSlt 138 (249)
T PRK04328 97 GSAAKREKYVVKDPDDVRELIDVLRQAIKDI-GAKRVVIDSVS 138 (249)
T ss_pred ccccccccccccCcccHHHHHHHHHHHHHhh-CCCEEEEeChh
Confidence 0112344556666666553 44579999974
No 271
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.82 E-value=0.0012 Score=46.91 Aligned_cols=23 Identities=48% Similarity=0.783 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
+|.|.|++|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 272
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0059 Score=54.44 Aligned_cols=98 Identities=16% Similarity=0.276 Sum_probs=58.4
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEE
Q 038663 151 LATPDYVPLESSSKALNSIMKLLKD-------------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAE 217 (385)
Q Consensus 151 ~~~~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~ 217 (385)
.|...+.++-|=.+.+++|.+...- +.++-|.++||+|.|||-+|+.|.++.. ..|- .++
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--acfi--rvi--- 243 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--ACFI--RVI--- 243 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ceEE--eeh---
Confidence 3444445566666777777665431 3567889999999999999999999765 3353 221
Q ss_pred cCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 218 SSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 218 vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
-.++.+.-- .........|.+.-+.. |.|+|+||++..
T Consensus 244 -------gselvqkyv-----gegarmvrelf~martk-kaciiffdeida 281 (435)
T KOG0729|consen 244 -------GSELVQKYV-----GEGARMVRELFEMARTK-KACIIFFDEIDA 281 (435)
T ss_pred -------hHHHHHHHh-----hhhHHHHHHHHHHhccc-ceEEEEeecccc
Confidence 111211110 01122334444444443 789999999853
No 273
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.80 E-value=0.016 Score=64.73 Aligned_cols=27 Identities=33% Similarity=0.270 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++-|.++||+|+|||.||+.++.+..
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 456889999999999999999998765
No 274
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.0095 Score=56.86 Aligned_cols=28 Identities=39% Similarity=0.640 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
+.++|+|+|++|+||||++..+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~ 267 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHG 267 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4579999999999999999999987653
No 275
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.79 E-value=0.0098 Score=55.57 Aligned_cols=83 Identities=20% Similarity=0.244 Sum_probs=51.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccc------cccHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIE------EENELQRRATLA 249 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~ 249 (385)
..+++-|+|++|+|||||+.++....... -. .++|+... .... ..++.++.... ....++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~--~v~yId~E~~~~~---~~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GG--TAAFIDAEHALDP---VYARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CC--cEEEEcccchhHH---HHHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45799999999999999999987765432 12 66777766 2222 23444443211 112334445555
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 038663 250 KRLRERTKKVLIILDDVR 267 (385)
Q Consensus 250 ~~l~~~~kr~LlVlDdv~ 267 (385)
..++.. ..-+||+|.+-
T Consensus 127 ~li~~~-~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSG-AVDIIVVDSVA 143 (321)
T ss_pred HHhhcc-CCcEEEEcchh
Confidence 555442 56789999875
No 276
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.78 E-value=0.0058 Score=60.69 Aligned_cols=88 Identities=22% Similarity=0.254 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcC----cccccc------HHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKF----KIEEEN------ELQRRA 246 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~----~~~~~~------~~~~~~ 246 (385)
..-.+|+|++|+|||||++.|.+..... +-+ ..++.+-|. ...++ ..|...+.. .....+ ...+.-
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~-~~~ivvLIgERpeEV-tdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTN-NPE-CHLMVVLVDERPEEV-TDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCC-eEEEEEEEeCchhhH-HHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999876532 122 123344555 22222 333333311 111111 122344
Q ss_pred HHHHHHHhcCCcEEEEEeCCCc
Q 038663 247 TLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 247 ~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
.+-+++.+.++.+||++|++-.
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchH
Confidence 5566776666999999999853
No 277
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.77 E-value=0.005 Score=58.13 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=35.0
Q ss_pred CCcchHHHHHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 158 PLESSSKALNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.++|+...+..+.+.+. .....-|.|+|..|+||+++|+.++...
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 47788877777777664 2334567899999999999999998653
No 278
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.77 E-value=0.014 Score=58.34 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccc----------------cc
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIE----------------EE 239 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~----------------~~ 239 (385)
...++.|.|++|+|||||+.++....-.+. . .+++++.. +...+...+ +.++.+.. ..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~g--e--~~~y~s~eEs~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANK--E--RAILFAYEESRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCC--C--eEEEEEeeCCHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 457999999999999999999988764321 2 55666666 777766664 45443211 11
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 240 NELQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 240 ~~~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
..+.....+.+.+... +.-++|+|.+..
T Consensus 337 ~~~~~~~~i~~~i~~~-~~~~vvIDsi~~ 364 (484)
T TIGR02655 337 GLEDHLQIIKSEIADF-KPARIAIDSLSA 364 (484)
T ss_pred ChHHHHHHHHHHHHHc-CCCEEEEcCHHH
Confidence 2355677777777663 556899998863
No 279
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.77 E-value=0.014 Score=56.81 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+.++.++|++|+||||++..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999999887754
No 280
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.76 E-value=0.0069 Score=59.18 Aligned_cols=89 Identities=22% Similarity=0.298 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
...-++|.|.+|+|||||+..+........ =. .++++.++ ...+++.++...-.. .....+.
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~--v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GG--YSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CC--EEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 345789999999999999999887765332 13 56667776 445555555543211 1111111
Q ss_pred --HHHHHHHHHHHHh-cCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRE-RTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~-~~kr~LlVlDdv~~ 268 (385)
....-.+-+++++ .++++||++|++-.
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1224456788866 56999999999853
No 281
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.75 E-value=0.013 Score=60.66 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+++.++|+.|+||||++.++.....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999987664
No 282
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.015 Score=55.13 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCcccccc--HHHHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEEN--ELQRRATLAKRLRE 254 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~--~~~~~~~l~~~l~~ 254 (385)
...++.|-|.+|+|||||.-++..++..+. .+.+|+-.....-.+--++.|+.+..... .+...+.|.+.+..
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-----~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG-----KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC-----cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 346999999999999999999999887532 45555555333333445666664332221 22234555556655
Q ss_pred cCCcEEEEEeCCCc
Q 038663 255 RTKKVLIILDDVRE 268 (385)
Q Consensus 255 ~~kr~LlVlDdv~~ 268 (385)
. +.-++|+|-+..
T Consensus 167 ~-~p~lvVIDSIQT 179 (456)
T COG1066 167 E-KPDLVVIDSIQT 179 (456)
T ss_pred c-CCCEEEEeccce
Confidence 4 889999999754
No 283
>PRK06762 hypothetical protein; Provisional
Probab=96.74 E-value=0.0015 Score=55.19 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
..+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 284
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.74 E-value=0.022 Score=50.56 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCC--CCCceEEEEEcC---CHHHHHHHHHHHhcCc-------c---ccccH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAP--YDKAHVIVAESS---DLRRIQDKIAELLKFK-------I---EEENE 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~~~wv~vs---~~~~l~~~i~~~l~~~-------~---~~~~~ 241 (385)
...++.|+|++|+|||+|+.++......... -.+..++|+... +... +..+.+..... . ...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~r-l~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPER-LVQLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHH-HHHHHHHhccchhhhhccEEEEeCCCH
Confidence 3569999999999999999999876432110 001266788776 2333 33444432211 0 01123
Q ss_pred HHHHHHHHHHHH---hcCCcEEEEEeCCC
Q 038663 242 LQRRATLAKRLR---ERTKKVLIILDDVR 267 (385)
Q Consensus 242 ~~~~~~l~~~l~---~~~kr~LlVlDdv~ 267 (385)
.++...+.+.+. . .+.-++|+|.+.
T Consensus 97 ~~~~~~l~~~~~~~~~-~~~~lvVIDsis 124 (226)
T cd01393 97 EQQLEIVEELERIMSS-GRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHhhc-CCeeEEEEcCcc
Confidence 344444444332 3 155689999985
No 285
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.74 E-value=0.022 Score=47.24 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
++.|+|.+|+||||||+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999875
No 286
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.74 E-value=0.009 Score=58.89 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
..|++++|+.|+||||++.++......
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~ 282 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVM 282 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHH
Confidence 479999999999999999999987643
No 287
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.72 E-value=0.0076 Score=58.54 Aligned_cols=86 Identities=21% Similarity=0.357 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccHH---
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENEL--- 242 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~~--- 242 (385)
+...++|.|.+|+|||||++.++.... -+ ..+++.++ ...++....+..-+. .....+..
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~d--v~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VD--VTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CC--EEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 456899999999999999999988654 23 66777776 344444333222111 11111111
Q ss_pred ---HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 243 ---QRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 243 ---~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
...-.+-+++++.++++|+++||+-.
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12344667776666999999999853
No 288
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.72 E-value=0.0023 Score=62.65 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=41.0
Q ss_pred CCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q 038663 158 PLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYD 209 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 209 (385)
.++||++.++.+...+..+ ..+.|.|++|+|||+||+.+.........|.
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 3889999999998887754 4788999999999999999999765433454
No 289
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.71 E-value=0.11 Score=48.43 Aligned_cols=86 Identities=17% Similarity=0.226 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccc------cccHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIE------EENELQRRATLAK 250 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~ 250 (385)
..+++-|+|+.|+||||||..+....... -. ..+|+..... +-...+..++.+.+ ....++....+.+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~--~~a~ID~e~~--ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQKQ--GG--ICAFIDAEHA--LDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--T---EEEEEESSS-----HHHHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhcc--cc--eeEEecCccc--chhhHHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 35699999999999999999999876533 23 8899998722 12233444443221 1223444555556
Q ss_pred HHHhcCCcEEEEEeCCCcc
Q 038663 251 RLRERTKKVLIILDDVREK 269 (385)
Q Consensus 251 ~l~~~~kr~LlVlDdv~~~ 269 (385)
.++.. .--++|+|-|-..
T Consensus 126 lirsg-~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSG-AVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTT-SESEEEEE-CTT-
T ss_pred Hhhcc-cccEEEEecCccc
Confidence 66653 4458899987643
No 290
>PRK09354 recA recombinase A; Provisional
Probab=96.71 E-value=0.013 Score=55.27 Aligned_cols=83 Identities=20% Similarity=0.247 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccc------cccHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIE------EENELQRRATLA 249 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~ 249 (385)
..+++-|+|++|+|||||+.++....... -. ..+|+... .... ..++.++.... ..+.++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~--~~~yId~E~s~~~---~~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GG--TAAFIDAEHALDP---VYAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CC--cEEEECCccchHH---HHHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45799999999999999999988765432 23 67788777 2221 34455543211 112344445555
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 038663 250 KRLRERTKKVLIILDDVR 267 (385)
Q Consensus 250 ~~l~~~~kr~LlVlDdv~ 267 (385)
..++.. ..-+||+|-|-
T Consensus 132 ~li~s~-~~~lIVIDSva 148 (349)
T PRK09354 132 TLVRSG-AVDLIVVDSVA 148 (349)
T ss_pred HHhhcC-CCCEEEEeChh
Confidence 555542 66789999875
No 291
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.70 E-value=0.011 Score=57.64 Aligned_cols=89 Identities=18% Similarity=0.267 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
...-++|.|.+|+|||+|+..+....... +-+ .++++.++ ...+++..+...-.. .....+.
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~--v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQG--VSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCC--EEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 34578999999999999999998875422 234 77788887 445555555443111 1111111
Q ss_pred --HHHHHHHHHHHHh-cCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRE-RTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~-~~kr~LlVlDdv~~ 268 (385)
....-.+-++++. .++++|+++||+-.
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 1234456778876 55999999999854
No 292
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.69 E-value=0.022 Score=57.17 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=36.6
Q ss_pred CCCCcchHHHHHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHH
Q 038663 156 YVPLESSSKALNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
+..++|....+..+.+.+. ......|.|.|++|+||+++|+.+++.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 3457888888877777664 234457899999999999999999987
No 293
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.68 E-value=0.021 Score=52.44 Aligned_cols=39 Identities=33% Similarity=0.500 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS 219 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs 219 (385)
+.+++.++|++|+||||++..++..+... . . .+.++...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~-g-~--~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ-G-K--SVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-C-C--EEEEEeCC
Confidence 46799999999999999999998877533 2 2 45566554
No 294
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.67 E-value=0.0094 Score=53.61 Aligned_cols=119 Identities=19% Similarity=0.200 Sum_probs=67.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEc-----C--CHHHHHHHHHHHhcCcc--------ccccH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAES-----S--DLRRIQDKIAELLKFKI--------EEENE 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~v-----s--~~~~l~~~i~~~l~~~~--------~~~~~ 241 (385)
+..+++|+|.+|+|||||++.+..-.+.. .. .+.|-.- + ...+-..++++.++... .....
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G--~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT--SG--EILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC--Cc--eEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45799999999999999999999765522 21 2222211 1 23344555666655421 11112
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCcchh------hhhhcCCCCCCCCCeEEEEeeCChhhhhhcC
Q 038663 242 LQRRATLAKRLRERTKKVLIILDDVREKIN------LAVSGIPYGEEGNRCKVIVTSRRLDVCSKMS 302 (385)
Q Consensus 242 ~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~ 302 (385)
+...-.+.+.|.- ++-++|.|+.-+..+ ...+...+. ...|...+..|..-.+...+.
T Consensus 114 QrQRi~IARALal--~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 114 QRQRIGIARALAL--NPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhHHHHHHHhh--CCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhc
Confidence 2233356667777 899999998654322 111111111 122556777777777766554
No 295
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.0077 Score=50.32 Aligned_cols=121 Identities=20% Similarity=0.329 Sum_probs=61.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHH-HHHHHHHhcCccccccHHHHHHHHHHHHHhcC
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRI-QDKIAELLKFKIEEENELQRRATLAKRLRERT 256 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l-~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 256 (385)
..+++|+|+.|+|||||++.+...... .. ..+++.-.+.... .......+.....-.......-.+...+-.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~---~~--G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~-- 97 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP---TS--GEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLL-- 97 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---Cc--cEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhc--
Confidence 469999999999999999999875432 22 3333322111100 011111121111111122223335555555
Q ss_pred CcEEEEEeCCCcchh------hhhhcCCCCCCCCCeEEEEeeCChhhhhhcCCceEE
Q 038663 257 KKVLIILDDVREKIN------LAVSGIPYGEEGNRCKVIVTSRRLDVCSKMSDVTVQ 307 (385)
Q Consensus 257 kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~~~~~ 307 (385)
.+-++++|+.....+ +..+...+.. .+..++++|..........++++.
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~~~d~i~~ 152 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAE--EGRTVIIVTHDPELAELAADRVIV 152 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEE
Confidence 688999999764321 1122112211 245688888877665543333333
No 296
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.66 E-value=0.012 Score=57.51 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh-hhCCCCCceEEEEEcCC----HHHHHHHHHHHhcCcccc-ccHHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID-TIAPYDKAHVIVAESSD----LRRIQDKIAELLKFKIEE-ENELQRRATLAKR 251 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~~~wv~vs~----~~~l~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 251 (385)
.+++.++|++|+||||++..+..... ....+ .+..++..+ ..+-+....+.++.+... .+..++...+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~---~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKK---KVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC---eEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-
Confidence 46999999999999999999887664 22222 555666652 222233334444433221 122233333322
Q ss_pred HHhcCCcEEEEEeCC
Q 038663 252 LRERTKKVLIILDDV 266 (385)
Q Consensus 252 l~~~~kr~LlVlDdv 266 (385)
+. ..=+|++|..
T Consensus 297 ~~---~~DlVlIDt~ 308 (424)
T PRK05703 297 LR---DCDVILIDTA 308 (424)
T ss_pred hC---CCCEEEEeCC
Confidence 22 3457788865
No 297
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.65 E-value=0.0019 Score=55.64 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..++|.|+|++|+||||+++.+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998653
No 298
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=96.64 E-value=0.008 Score=58.58 Aligned_cols=86 Identities=19% Similarity=0.349 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------cccccc-----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEEN----- 240 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~----- 240 (385)
....++|+|+.|+|||||++.+..... .+ ..+...+. +..++...+...-.. .....+
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~d--v~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~ 240 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----AD--IIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRL 240 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CC--EEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHH
Confidence 445799999999999999998876432 22 43444444 455555555443222 111111
Q ss_pred -HHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 241 -ELQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 241 -~~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
.......+-+++++.++++|+++||+-.
T Consensus 241 ~a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 241 RAAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 1122345667777666999999999854
No 299
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.63 E-value=0.0081 Score=56.27 Aligned_cols=86 Identities=24% Similarity=0.378 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
....++|+|+.|+|||||++.+...... + ......+. +..++.......-.. .....+.
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~--~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTTA----D--VNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC----C--EEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 3468899999999999999998875442 2 33333333 555555555443221 1111111
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
....-.+-+++.+.++.+|+++||+..
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 122334556666556999999999854
No 300
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.013 Score=56.46 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..++.++|++|+||||++.++.....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~ 248 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYF 248 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999997653
No 301
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.63 E-value=0.0099 Score=52.55 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.|.|+|++|+||||+++.+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988754
No 302
>PRK03839 putative kinase; Provisional
Probab=96.62 E-value=0.0019 Score=55.44 Aligned_cols=24 Identities=42% Similarity=0.729 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.|.|+|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999875
No 303
>PRK14532 adenylate kinase; Provisional
Probab=96.62 E-value=0.013 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHhh
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
|.|+|++|+||||+++.+.+...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999987653
No 304
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0097 Score=50.46 Aligned_cols=25 Identities=44% Similarity=0.614 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
..++.|.||+|+|||||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999876
No 305
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0059 Score=49.63 Aligned_cols=120 Identities=22% Similarity=0.209 Sum_probs=61.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHH---HHHHHHHHhcCccccccHHHHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRR---IQDKIAELLKFKIEEENELQRRATLAKRLRE 254 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~---l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 254 (385)
.+-|.|.|-+|+|||||+..+..... |. |+++|+..+ +....=+. ......+.+.+.+.|...+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~----~~-----~i~isd~vkEn~l~~gyDE~--y~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG----LE-----YIEISDLVKENNLYEGYDEE--YKCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC----Cc-----eEehhhHHhhhcchhccccc--ccCccccHHHHHHHHHHHHhc
Confidence 45789999999999999999996544 44 667772221 11111000 012233566677777777766
Q ss_pred cCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhhhcCCceEEcCCCCHHHHHHHH
Q 038663 255 RTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCSKMSDVTVQIEELGEEDRLKLF 320 (385)
Q Consensus 255 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~~~~~~l~~L~~~~~~~lf 320 (385)
..+++ | |... ..||..--...+++||-+......+..+.|.-..+.+..--++|
T Consensus 76 --Gg~IV--D-------yHgC-d~FperwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIf 129 (176)
T KOG3347|consen 76 --GGNIV--D-------YHGC-DFFPERWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIF 129 (176)
T ss_pred --CCcEE--e-------eccc-CccchhheeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHH
Confidence 33322 2 2211 12222222334666766665544443333433444433333333
No 306
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.61 E-value=0.0023 Score=55.98 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.+++|+|+.|.|||||.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 69999999999999999999843
No 307
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.019 Score=53.72 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=26.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYD 209 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 209 (385)
..+-|.++||+|+|||-||+.+..+.. ..|-
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeag--a~fI 156 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAG--ANFI 156 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcC--CCcc
Confidence 457889999999999999999999876 3354
No 308
>PRK14528 adenylate kinase; Provisional
Probab=96.61 E-value=0.011 Score=50.91 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+.|.|.|++|+||||+++.+.+...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999987764
No 309
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.0058 Score=54.79 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...++|+||.|.|||||.+.+.--
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 479999999999999999999863
No 310
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.60 E-value=0.0017 Score=50.60 Aligned_cols=24 Identities=50% Similarity=0.747 Sum_probs=20.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHhhh
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
|.|+|++|+|||+||+.+..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999887653
No 311
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.59 E-value=0.015 Score=47.95 Aligned_cols=27 Identities=37% Similarity=0.640 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+++|+|+.|+|||||++.+.....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 446899999999999999999987643
No 312
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.012 Score=51.51 Aligned_cols=122 Identities=17% Similarity=0.195 Sum_probs=67.7
Q ss_pred HHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhh-CCCCCceEEEEEcCCHHHHHHHHHHHhcC--------ccccc
Q 038663 169 IMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTI-APYDKAHVIVAESSDLRRIQDKIAELLKF--------KIEEE 239 (385)
Q Consensus 169 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~~~wv~vs~~~~l~~~i~~~l~~--------~~~~~ 239 (385)
++..|-.....-+.|.|++|+|||||.+.+..-.... ..|.+..+..+.-+ .+ |+..+.. ..+..
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer--sE----Iag~~~gvpq~~~g~R~dVl 201 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER--SE----IAGCLNGVPQHGRGRRMDVL 201 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc--ch----hhccccCCchhhhhhhhhhc
Confidence 4444445555668899999999999999999876543 34542122222222 11 1111111 00111
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhhh
Q 038663 240 NELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCSK 300 (385)
Q Consensus 240 ~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~ 300 (385)
+......-+...+++. -+=++|+|++-..++-..+..++ ..|.+++.|..-..+...
T Consensus 202 d~cpk~~gmmmaIrsm-~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~iedl 258 (308)
T COG3854 202 DPCPKAEGMMMAIRSM-SPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGIEDL 258 (308)
T ss_pred ccchHHHHHHHHHHhc-CCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccHHHh
Confidence 1111122333334443 67799999998877665554443 347788888876655443
No 313
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.59 E-value=0.011 Score=52.70 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=21.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.|.|+|++|+||||+|+.+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998764
No 314
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.58 E-value=0.0027 Score=56.45 Aligned_cols=170 Identities=15% Similarity=0.180 Sum_probs=80.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh--hhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCcc----ccccHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI--DTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKI----EEENELQRRATLAK 250 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~--~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~----~~~~~~~~~~~l~~ 250 (385)
..+++.|.|+.|.||||+.+.+..-. .....|-+.... .++ +...++..++... ....-......+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~--~~~----~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~ 102 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSA--DIP----IVDCILARVGASDSQLKGVSTFMAEMLETAA 102 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccE--EEe----ccceeEeeeccccchhcCcChHHHHHHHHHH
Confidence 45799999999999999999987531 111112211111 111 1111222222110 00111111222333
Q ss_pred HHHhcCCcEEEEEeCC---Ccchh-----hhhhcCCCCCCCCCeEEEEeeCChhhhhhcC----CceEEcCCCCHH--HH
Q 038663 251 RLRERTKKVLIILDDV---REKIN-----LAVSGIPYGEEGNRCKVIVTSRRLDVCSKMS----DVTVQIEELGEE--DR 316 (385)
Q Consensus 251 ~l~~~~kr~LlVlDdv---~~~~~-----~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~----~~~~~l~~L~~~--~~ 316 (385)
.++....+-|+++|+. .+..+ |..+ ..+.. ..|+.+|++|....+...+. ....++.....+ +.
T Consensus 103 il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~ 180 (222)
T cd03285 103 ILKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRT 180 (222)
T ss_pred HHHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCc
Confidence 3321227889999999 33222 2111 11111 24678999999766654433 111222211111 11
Q ss_pred HHHHHHhh--CCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhcCC
Q 038663 317 LKLFKQIA--RLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALRGK 360 (385)
Q Consensus 317 ~~lf~~~~--~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~ 360 (385)
. .|...+ |... ...+-.+++.+ |+|..+..-|.-+..+
T Consensus 181 ~-~~~Y~l~~G~~~----~s~a~~~a~~~-g~p~~vi~~A~~~~~~ 220 (222)
T cd03285 181 L-TMLYKVEKGACD----QSFGIHVAELA-NFPKEVIEMAKQKALE 220 (222)
T ss_pred E-eEEEEEeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHHh
Confidence 1 122222 2211 24455666666 9999998888766543
No 315
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0023 Score=55.86 Aligned_cols=28 Identities=43% Similarity=0.738 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
++.+|+|.|.+|+||||+|+.+++.+..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4579999999999999999999998874
No 316
>PRK05922 type III secretion system ATPase; Validated
Probab=96.58 E-value=0.0099 Score=57.70 Aligned_cols=86 Identities=27% Similarity=0.344 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCc-------ccccc-----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFK-------IEEEN----- 240 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~-------~~~~~----- 240 (385)
....++|+|+.|+|||||++.+..... .+ ......++ ...+.+.+........ ..+.+
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d--~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----ST--INVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CC--ceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 445789999999999999999987543 12 33333333 4445555544333221 11111
Q ss_pred -HHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 241 -ELQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 241 -~~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
.....-.+-+++++.++++|+++||+-.
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1123445667777666999999999854
No 317
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.57 E-value=0.0031 Score=52.42 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
..+|.|.|.+|+||||||+.+.+.+...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999998754
No 318
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.54 E-value=0.01 Score=57.60 Aligned_cols=86 Identities=23% Similarity=0.317 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
....++|+|+.|+|||||++.+..... .+ ..++..++ ...+++.+....-.. .....+.
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~d--~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAPD----AD--SNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCCC----CC--EEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 456889999999999999998886543 34 44555555 343444443321100 0111111
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
....-.+-+++++.++++|+++||+..
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 112345667777666999999999853
No 319
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.54 E-value=0.015 Score=52.96 Aligned_cols=95 Identities=13% Similarity=0.181 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCchHHHH-HHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccHH--
Q 038663 177 KVNIIGVQGPGGVGKSTLM-EQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENEL-- 242 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~~-- 242 (385)
...-++|.|.+|+|||+|+ ..+.+... -+ ...+++.++ ...++...+...-.. .....+..
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~~----~~-v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQKG----KK-VYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhcC----CC-eEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 3457899999999999995 55655432 12 144667776 444555555432111 11111111
Q ss_pred ----HHHHHHHHHHHhcCCcEEEEEeCCCcc-hhhhhhc
Q 038663 243 ----QRRATLAKRLRERTKKVLIILDDVREK-INLAVSG 276 (385)
Q Consensus 243 ----~~~~~l~~~l~~~~kr~LlVlDdv~~~-~~~~~l~ 276 (385)
...-.+-+++...++.+|+++||+-.. ..+.++.
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHH
Confidence 123445566666569999999999654 4455543
No 320
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.54 E-value=0.011 Score=57.20 Aligned_cols=86 Identities=23% Similarity=0.389 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
....++|+|++|+|||||++.+..... -+ ..+...+. ...++...+...-.. .....+.
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~--~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~ 209 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----AD--VVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRL 209 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CC--EEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHH
Confidence 445799999999999999998886543 22 33344454 344444443332111 1111111
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
....-.+-+++++.++++|+++||+..
T Consensus 210 ~a~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 210 RAAFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 122345667776666999999999853
No 321
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.53 E-value=0.0049 Score=51.14 Aligned_cols=74 Identities=26% Similarity=0.262 Sum_probs=41.5
Q ss_pred EEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHH-----------HHHHhcCccccccHHHHHHHHHHH
Q 038663 183 VQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDK-----------IAELLKFKIEEENELQRRATLAKR 251 (385)
Q Consensus 183 I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~-----------i~~~l~~~~~~~~~~~~~~~l~~~ 251 (385)
|+|++|+||||+++.+.+... |. .++++ +++++ +.+.+. .....+.+-....+...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~----~~-----~is~~---~llr~~~~~~s~~g~~i~~~l~-~g~~vp~~~v~~ll~~~ 67 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG----LV-----HISVG---DLLREEIKSDSELGKQIQEYLD-NGELVPDELVIELLKER 67 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT----SE-----EEEHH---HHHHHHHHTTSHHHHHHHHHHH-TTSS--HHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC----cc-----eechH---HHHHHHHhhhhHHHHHHHHHHH-hhccchHHHHHHHHHHH
Confidence 789999999999999999864 32 22332 22222 222221 11122344455666666
Q ss_pred HHhcCCcEEEEEeCCCcc
Q 038663 252 LRERTKKVLIILDDVREK 269 (385)
Q Consensus 252 l~~~~kr~LlVlDdv~~~ 269 (385)
+.......-+|||+.-..
T Consensus 68 l~~~~~~~g~ildGfPrt 85 (151)
T PF00406_consen 68 LEQPPCNRGFILDGFPRT 85 (151)
T ss_dssp HHSGGTTTEEEEESB-SS
T ss_pred Hhhhcccceeeeeecccc
Confidence 665323556789998644
No 322
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.53 E-value=0.0053 Score=62.74 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=56.9
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHHHHHhc
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKIAELLK 233 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i~~~l~ 233 (385)
...+.|.++.++.|...+... +.+.++|++|+||||+++.+.+.... .+|+ ..+|..-+ +...+++.+...++
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~--~~~~~~np~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQ--DILVYPNPEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHH--HheEeeCCCcchHHHHHHHHHhcC
Confidence 445788888888887766654 47899999999999999999987643 3456 77787777 77777888877665
Q ss_pred C
Q 038663 234 F 234 (385)
Q Consensus 234 ~ 234 (385)
.
T Consensus 105 ~ 105 (637)
T PRK13765 105 K 105 (637)
T ss_pred H
Confidence 4
No 323
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.015 Score=49.43 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+++|+|+.|+|||||.+.+.....
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 456999999999999999999987643
No 324
>PF13245 AAA_19: Part of AAA domain
Probab=96.52 E-value=0.0098 Score=43.11 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCchH-HHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKS-TLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKT-tLa~~v~~~~~ 203 (385)
+.+++.|.|++|+||| |+++.+.+...
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3467888999999999 55555555553
No 325
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.52 E-value=0.026 Score=56.61 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=36.9
Q ss_pred CCCCcchHHHHHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 156 YVPLESSSKALNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
+..++|....+..+.+.+. .....-|.|.|.+|+||+.+|+.+++..
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 3457888888877777664 2334678999999999999999999764
No 326
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.51 E-value=0.04 Score=51.67 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCC--CCceEEEEEcC---CHHHHHHHHHHHhcCccc-------------c
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPY--DKAHVIVAESS---DLRRIQDKIAELLKFKIE-------------E 238 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~-------------~ 238 (385)
...++-|+|++|+|||+|+.+++......... .+..++|++.. +..+ +.++++.++.... .
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~r-l~~~~~~~gl~~~~~~~~i~i~~~~~~ 172 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPER-IMQMAEARGLDPDEVLKNIYVARAYNS 172 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhceEEEecCCH
Confidence 45789999999999999999998764321101 11277888877 3444 3445554443210 0
Q ss_pred ccHHHHHHHHHHHHHhcC-CcEEEEEeCCC
Q 038663 239 ENELQRRATLAKRLRERT-KKVLIILDDVR 267 (385)
Q Consensus 239 ~~~~~~~~~l~~~l~~~~-kr~LlVlDdv~ 267 (385)
.....+...+.+.+.... ..-+||+|.+-
T Consensus 173 ~~~~~lld~l~~~i~~~~~~~~lVVIDSis 202 (310)
T TIGR02236 173 NHQMLLVEKAEDLIKELNNPVKLLIVDSLT 202 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 011123445566665521 13489999875
No 327
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=96.51 E-value=0.011 Score=57.55 Aligned_cols=86 Identities=20% Similarity=0.345 Sum_probs=50.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCc-------cccc------
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFK-------IEEE------ 239 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~-------~~~~------ 239 (385)
....++|+|+.|+|||||++.+..... .+ ..+...+. +..++....+..-+.. ....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~----~d--v~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl 227 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQ----AD--VVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRI 227 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccC----CC--eEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhH
Confidence 456899999999999999998876543 12 22222233 3444443333332211 0111
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 240 NELQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 240 ~~~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
...+....+.+++.+.++++|+++||+-.
T Consensus 228 ~a~e~a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 228 KATELCHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHHHHHhhhccCCEEEeecchhH
Confidence 12233445666665556999999999854
No 328
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.50 E-value=0.19 Score=46.74 Aligned_cols=139 Identities=9% Similarity=0.072 Sum_probs=77.8
Q ss_pred HHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhh--------hhCCCCCceEEEEEc-C---CHHHHHHHHHHHh
Q 038663 166 LNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQID--------TIAPYDKAHVIVAES-S---DLRRIQDKIAELL 232 (385)
Q Consensus 166 ~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~--------~~~~F~~~~~~wv~v-s---~~~~l~~~i~~~l 232 (385)
++.+.+.+..+.. ++..++|+.|.||+++|..+.+..- ...|=+ ...++.. + ...++. ++.+.+
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~--n~~~~d~~g~~i~vd~Ir-~l~~~~ 81 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPA--NIILFDIFDKDLSKSEFL-SAINKL 81 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCc--ceEEeccCCCcCCHHHHH-HHHHHh
Confidence 3445555555444 5677999999999999999998861 111111 1222221 1 111111 122222
Q ss_pred cCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEee-CChhhhhh-cC-CceEE
Q 038663 233 KFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTS-RRLDVCSK-MS-DVTVQ 307 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-r~~~v~~~-~~-~~~~~ 307 (385)
.... +-.+ .+=++|+|++... .....+...+.+...++.+|++| ....+... .. +..++
T Consensus 82 ~~~~--------------~~~~--~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 82 YFSS--------------FVQS--QKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred ccCC--------------cccC--CceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 1100 0012 6677888887644 23444544454445566666655 44444433 33 88999
Q ss_pred cCCCCHHHHHHHHHHh
Q 038663 308 IEELGEEDRLKLFKQI 323 (385)
Q Consensus 308 l~~L~~~~~~~lf~~~ 323 (385)
+.+++.++....+...
T Consensus 146 f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 146 VKEPDQQKILAKLLSK 161 (299)
T ss_pred CCCCCHHHHHHHHHHc
Confidence 9999999998877764
No 329
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.50 E-value=0.0084 Score=54.31 Aligned_cols=25 Identities=44% Similarity=0.655 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
.|.++|++|+||||+|+.+.+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999988764
No 330
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.50 E-value=0.01 Score=57.81 Aligned_cols=87 Identities=26% Similarity=0.310 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEc---CCHHHHHHHHHHHhc-C------cccccc-----H
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAES---SDLRRIQDKIAELLK-F------KIEEEN-----E 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~v---s~~~~l~~~i~~~l~-~------~~~~~~-----~ 241 (385)
....++|+|++|+|||||++.+...... .. .+++..- .+..++....+.... . +.+... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~--gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~ 238 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAF---DT--VVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLA 238 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---Ce--eeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHH
Confidence 3458999999999999999988764331 22 3333321 155555444433321 1 111111 1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 ~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
....-.+-+++++.++.+|+++||+-.
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchHH
Confidence 122344667776666999999999854
No 331
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.50 E-value=0.021 Score=55.73 Aligned_cols=89 Identities=22% Similarity=0.299 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
...-++|.|.+|+|||||+..+........ =. .++++-++ ...+++.++...-.. .....+.
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~-~~--v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GG--YSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcC-CC--eEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 345789999999999999999987765321 12 66677776 455566655433111 1111111
Q ss_pred --HHHHHHHHHHHHh-cCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRE-RTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~-~~kr~LlVlDdv~~ 268 (385)
....-.+-+++++ .++++|+++||+-.
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 1134456778866 45899999999854
No 332
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=96.49 E-value=0.018 Score=53.99 Aligned_cols=85 Identities=21% Similarity=0.298 Sum_probs=53.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHh----cC----------cccc
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELL----KF----------KIEE 238 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l----~~----------~~~~ 238 (385)
....++|.|+.|+|||+|++++.+... -+ .++++.++ ...+++.++-+.- +. ....
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~~----~d--vvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~ 229 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYSN----SD--IVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSN 229 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCCC----CC--EEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCC
Confidence 345889999999999999999988643 34 67777777 3444444432211 11 1111
Q ss_pred ccHH------HHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 239 ENEL------QRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 239 ~~~~------~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
.+.. ...-.+-+++++.++.+|+++|++.
T Consensus 230 ~p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~t 264 (369)
T cd01134 230 MPVAAREASIYTGITIAEYFRDMGYNVALMADSTS 264 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChh
Confidence 1111 1233456777666699999999984
No 333
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.48 E-value=0.073 Score=48.37 Aligned_cols=88 Identities=26% Similarity=0.287 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhC--CCCCceEEEEEcC---CHHHHHHHHHHHhcCccc----------cccHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIA--PYDKAHVIVAESS---DLRRIQDKIAELLKFKIE----------EENEL 242 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~----------~~~~~ 242 (385)
..++=|+|++|+|||.|+.+++-...... .-.+..++|++.. +..++ .+|++..+.... ..+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl-~~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERL-QQIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHH-HHHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHH-HHHhhccccccchhhhceeeeecCCHH
Confidence 46889999999999999998875532211 1112378999887 44443 456655432110 01122
Q ss_pred ---HHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 243 ---QRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 243 ---~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
.....+...+.+. +--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~-~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSES-KIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHS-CEEEEEEETSS
T ss_pred HHHHHHHHHHhhcccc-ceEEEEecchH
Confidence 2334444555553 56699999974
No 334
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.47 E-value=0.019 Score=56.59 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccccc--cHHHHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIEEE--NELQRRATLAKRLRE 254 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 254 (385)
..++.|.|++|+|||||+.++....... -. .++|++.. +...+.. -++.++...... ........+.+.++.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~--~vlYvs~Ees~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GG--KVLYVSGEESASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CC--eEEEEEccccHHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4699999999999999999998876522 12 66777776 4444332 245554321110 000112334444443
Q ss_pred cCCcEEEEEeCCC
Q 038663 255 RTKKVLIILDDVR 267 (385)
Q Consensus 255 ~~kr~LlVlDdv~ 267 (385)
. +.-++|+|.+.
T Consensus 155 ~-~~~lVVIDSIq 166 (446)
T PRK11823 155 E-KPDLVVIDSIQ 166 (446)
T ss_pred h-CCCEEEEechh
Confidence 2 56689999975
No 335
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.47 E-value=0.054 Score=48.28 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=33.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDK 227 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~ 227 (385)
...++.|.|++|+|||+|+.++....-.. -. ..+|++.. +...+...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~--~~~~is~e~~~~~i~~~ 66 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GD--PVIYVTTEESRESIIRQ 66 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CC--eEEEEEccCCHHHHHHH
Confidence 45799999999999999999876543221 23 66788776 55555433
No 336
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.47 E-value=0.0085 Score=58.19 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=33.6
Q ss_pred CcchHHHHHHHHHHhc-------cC---------CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 159 LESSSKALNSIMKLLK-------DE---------KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~-------~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
++|.+..++.+...+. .. ....+.++|++|+|||+||+.+.....
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 6788887776654431 10 235789999999999999999997664
No 337
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.47 E-value=0.0025 Score=52.07 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=21.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHhh
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
|.|+|++|+|||+||+.+++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 67999999999999999999883
No 338
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.47 E-value=0.0023 Score=55.83 Aligned_cols=23 Identities=43% Similarity=0.832 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 339
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.47 E-value=0.0056 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
..++.+.|+-|+|||||++.+.+.+..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999998754
No 340
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.47 E-value=0.003 Score=53.57 Aligned_cols=26 Identities=38% Similarity=0.337 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...|.|+|++|+||||+|+.+.+.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999875
No 341
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.46 E-value=0.005 Score=56.79 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+.+|+|.|+.|+||||+|+.+.....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999998876654
No 342
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.46 E-value=0.048 Score=54.82 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=37.5
Q ss_pred CCCcchHHHHHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 157 VPLESSSKALNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..++|+...+..+.+.+. .....-|.|+|..|+|||++|+.+++...
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 457888888888777765 23445788999999999999999998754
No 343
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.46 E-value=0.014 Score=56.51 Aligned_cols=86 Identities=27% Similarity=0.422 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------cccccc-H---
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEEN-E--- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~-~--- 241 (385)
....++|+|+.|+|||||++.+...... + ......+. ...++....+..-+. .....+ .
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~----~--~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~ 212 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDA----D--VVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRR 212 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC----C--EEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHH
Confidence 3468999999999999999988865431 2 22333333 444455544333211 111111 1
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
....-.+-+++++.++++|+++||+..
T Consensus 213 ~a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 213 QAAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112345667776666999999999854
No 344
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.45 E-value=0.0027 Score=54.30 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+++|+|++|+|||||++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 345
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.44 E-value=0.0023 Score=56.75 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+|+|.|++|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998875
No 346
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.44 E-value=0.0042 Score=58.74 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=42.1
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+..++|.++.+..|...+.++...-+.|.|+.|+||||+|+.+++-..
T Consensus 16 f~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred HHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456889999999998888888888888999999999999999988754
No 347
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.43 E-value=0.015 Score=51.16 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHhh
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
|.|+|++|+||||+|+.+.+...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999987654
No 348
>PRK00625 shikimate kinase; Provisional
Probab=96.43 E-value=0.0028 Score=53.99 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.|.|+|++|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998865
No 349
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.42 E-value=0.0088 Score=61.15 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=51.0
Q ss_pred CCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHHHHHhc
Q 038663 157 VPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKIAELLK 233 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i~~~l~ 233 (385)
..++|.++.++.+...+... +.+.++|++|+||||+++.+.+..... .|. ..+++.-+ +...++..+...++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~--~~~~~~n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELE--DILVYPNPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hhe--eEEEEeCCCCCchHHHHHHHHhhc
Confidence 45788888777777766654 366799999999999999999887543 344 34444444 56666777766664
No 350
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.42 E-value=0.0052 Score=56.17 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
+.|.|+|.+|+||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999998775
No 351
>PRK06851 hypothetical protein; Provisional
Probab=96.42 E-value=0.054 Score=51.58 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=33.3
Q ss_pred cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHH
Q 038663 175 DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLR 222 (385)
Q Consensus 175 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~ 222 (385)
.+--+++.|.|++|+|||||+++++.....+ .+. ..++-|-++..
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~--v~~~hC~~dPd 255 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFD--VEVYHCGFDPD 255 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCe--EEEEeCCCCCC
Confidence 3445789999999999999999999988654 355 55555554433
No 352
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.41 E-value=0.0095 Score=54.32 Aligned_cols=86 Identities=9% Similarity=0.188 Sum_probs=59.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCcc------------------
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKI------------------ 236 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~------------------ 236 (385)
+..+++.|+|.+|+|||+++.++....... .. .++|++.. +..++...+.+ ++-..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge--~vlyvs~~e~~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~ 95 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GE--PVLYVSTEESPEELLENARS-FGWDLEVYIEKGKLAILDAFLSE 95 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CC--cEEEEEecCCHHHHHHHHHH-cCCCHHHHhhcCCEEEEEccccc
Confidence 356799999999999999999999886643 55 78999999 66666665543 32110
Q ss_pred -c--------cccHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 237 -E--------EENELQRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 237 -~--------~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
. ..+...+...+.+..+.. +...+|+|.+-
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~I~~~~~~~-~~~~~ViDsi~ 134 (260)
T COG0467 96 KGLVSIVVGDPLDLEELLDRIREIVEKE-GADRVVIDSIT 134 (260)
T ss_pred cccccccccCCccHHHHHHHHHHHHHHh-CCCEEEEeCCc
Confidence 0 012344566666666664 47788999885
No 353
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.41 E-value=0.039 Score=49.53 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAE 230 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~ 230 (385)
..++.|.|++|+|||+++.++..+.-..... .++|++.. +..++...+..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~---~vly~s~E~~~~~~~~r~~~ 63 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGK---PVLFFSLEMSKEQLLQRLLA 63 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCC---ceEEEeCCCCHHHHHHHHHH
Confidence 3689999999999999999988775433122 56788877 66677666643
No 354
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.40 E-value=0.048 Score=51.32 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=52.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCC--CCceEEEEEcC---CHHHHHHHHHHHhcCccc----------ccc-
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPY--DKAHVIVAESS---DLRRIQDKIAELLKFKIE----------EEN- 240 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~----------~~~- 240 (385)
...++-|+|++|+|||+|+.++.-.......+ .+..++|++.. +..+ +.++++.++.... ..+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~r-l~~~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPER-IEQMAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHH-HHHHHHHcCCChHhhhccEEEEeCCCH
Confidence 45799999999999999999998664321111 11278888887 3444 3445555443211 001
Q ss_pred --HHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 241 --ELQRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 241 --~~~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
.......+...+....+--|||+|-+-
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECch
Confidence 112344455555431144589999874
No 355
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=96.37 E-value=0.019 Score=55.91 Aligned_cols=87 Identities=26% Similarity=0.288 Sum_probs=50.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCcc---------ccccH----
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKI---------EEENE---- 241 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~---------~~~~~---- 241 (385)
.....++|+|++|+|||||++.+..... -+ ......++ ..++...-+-..++... ...+.
T Consensus 155 ~~Gq~~~i~G~sG~GKStLl~~i~~~~~----~~--v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~ 228 (434)
T PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKGCL----AP--IKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRK 228 (434)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC----CC--EEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhh
Confidence 3456899999999999999999986543 22 33344444 22222211112222210 01111
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
......+.+++++.++++|+++||+-.
T Consensus 229 ~~~~~a~~iAEyFrd~G~~Vll~~DslTr 257 (434)
T PRK08472 229 YGAFCAMSVAEYFKNQGLDVLFIMDSVTR 257 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecccchH
Confidence 112445667776666999999999854
No 356
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.37 E-value=0.0039 Score=51.10 Aligned_cols=27 Identities=30% Similarity=0.585 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
++|.|+|+.|+|||||++.+.+.+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc
Confidence 479999999999999999999998753
No 357
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.37 E-value=0.016 Score=51.40 Aligned_cols=62 Identities=23% Similarity=0.383 Sum_probs=35.8
Q ss_pred HHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhh----hCCCCCceEEEEEcC--CHHHHHHHHHH
Q 038663 167 NSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDT----IAPYDKAHVIVAESS--DLRRIQDKIAE 230 (385)
Q Consensus 167 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~F~~~~~~wv~vs--~~~~l~~~i~~ 230 (385)
+.+...+.... +..|.||+|+|||+++..+....-. .....+..+++++.+ ....++..+.+
T Consensus 8 ~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 8 EAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 33444444332 7899999999999776666666510 011222367777777 66677777666
No 358
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.35 E-value=0.0067 Score=57.27 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=39.8
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
+..++|.+..+..|.-.+.++....+.|.|++|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34578999888888777777777788899999999999999998765
No 359
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.35 E-value=0.0068 Score=57.81 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=45.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh----hCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT----IAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRL 252 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l 252 (385)
..+-+-|+|+.|.|||.|+-..|+.... +-||. ..+.++-+.+.... ........+.+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh-------------~Fm~~vh~~l~~~~---~~~~~l~~va~~l 124 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH-------------EFMLDVHSRLHQLR---GQDDPLPQVADEL 124 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc-------------HHHHHHHHHHHHHh---CCCccHHHHHHHH
Confidence 4678899999999999999999998655 23554 23333333322111 0111123344555
Q ss_pred HhcCCcEEEEEeCCCc
Q 038663 253 RERTKKVLIILDDVRE 268 (385)
Q Consensus 253 ~~~~kr~LlVlDdv~~ 268 (385)
.+ +..||+||++.-
T Consensus 125 ~~--~~~lLcfDEF~V 138 (362)
T PF03969_consen 125 AK--ESRLLCFDEFQV 138 (362)
T ss_pred Hh--cCCEEEEeeeec
Confidence 55 677999999753
No 360
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.34 E-value=0.004 Score=52.75 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...+++|+|+.|+|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4569999999999999999999988764
No 361
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.34 E-value=0.0038 Score=53.28 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++|.+.|++|+||||+|+.+.+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 36899999999999999999988753
No 362
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.34 E-value=0.0088 Score=47.53 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=31.3
Q ss_pred CcchHHHHHHHHHH----hc---cCCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 159 LESSSKALNSIMKL----LK---DEKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 159 ~~gr~~~~~~l~~~----L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
++|..-..+.+++. +. ++.+-|++.+|++|+|||.+++.+++.+
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45544444444444 43 2456799999999999999999999883
No 363
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=96.34 E-value=0.025 Score=55.53 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=57.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH-----
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE----- 241 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~----- 241 (385)
..-++|.|..|+|||+|+..+.+.....+.-.+..++++.++ ...+++..+...-.. .....+.
T Consensus 143 GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 222 (460)
T PRK04196 143 GQKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERIL 222 (460)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHH
Confidence 457899999999999999999987653211112256666776 555566655543211 1111111
Q ss_pred -HHHHHHHHHHHH-hcCCcEEEEEeCCCc
Q 038663 242 -LQRRATLAKRLR-ERTKKVLIILDDVRE 268 (385)
Q Consensus 242 -~~~~~~l~~~l~-~~~kr~LlVlDdv~~ 268 (385)
......+-++++ +.++++||++||+-.
T Consensus 223 a~~~a~tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 223 TPRMALTAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence 123445778888 566999999999853
No 364
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.34 E-value=0.0049 Score=55.14 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
+...|.++||+|+||||+.+.++.+...+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 45688899999999999999999998755
No 365
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.33 E-value=0.017 Score=55.21 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIA 229 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~ 229 (385)
.++.|.|.+|+|||.||-.++..+....... ....++.+ .....+...+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~--~~~~l~~n~~l~~~l~~~l 51 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGK--KVLYLCGNHPLRNKLREQL 51 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCC--ceEEEEecchHHHHHHHHH
Confidence 4789999999999999999999982222344 56677777 5555444443
No 366
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.33 E-value=0.047 Score=51.12 Aligned_cols=88 Identities=20% Similarity=0.181 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhh---CCCCCceEEEEEcC---CHHHHHHHHHHHhcCcccc----------cc
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTI---APYDKAHVIVAESS---DLRRIQDKIAELLKFKIEE----------EN 240 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~F~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~~----------~~ 240 (385)
..+++-|+|++|+|||+|+.+++-..... ..- +..++|++.. +..+ +.++++.++..... .+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~-~~~vvYIdtE~~f~~eR-i~~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGG-NGKVAYIDTEGTFRPDR-IRAIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCC-CCeEEEEEcCCCCCHHH-HHHHHHHcCCChHHhcCcEEEecCCC
Confidence 45799999999999999999877432211 011 1277888887 3444 44566666542210 12
Q ss_pred HHH---HHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 241 ELQ---RRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 241 ~~~---~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
.++ ....+...+... +--|||+|.+-
T Consensus 173 ~e~~~~~l~~l~~~i~~~-~~~LvVIDSis 201 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEE-PFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHHhhcc-CCCEEEEEcch
Confidence 222 233444445442 45589999875
No 367
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.33 E-value=0.22 Score=51.80 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
....|+|+|.+|+|||||++.+..-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999998853
No 368
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.33 E-value=0.0032 Score=51.70 Aligned_cols=24 Identities=50% Similarity=0.861 Sum_probs=21.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+|.|+|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 369
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.32 E-value=0.0031 Score=55.89 Aligned_cols=24 Identities=42% Similarity=0.727 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
..-.++|+|++|+|||||.+.+.-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999984
No 370
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.32 E-value=0.024 Score=55.91 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=49.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccccc--cHHHHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIEEE--NELQRRATLAKRLR 253 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~ 253 (385)
...++.|.|++|+|||||+.++........ . .++|++.. +...+.. -+..++...... -.......+.+.+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~--kvlYvs~EEs~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ--M--KVLYVSGEESLQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--C--cEEEEECcCCHHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 456999999999999999999987654321 2 56677766 4433322 233443321110 00011234444554
Q ss_pred hcCCcEEEEEeCCCc
Q 038663 254 ERTKKVLIILDDVRE 268 (385)
Q Consensus 254 ~~~kr~LlVlDdv~~ 268 (385)
.. +.-++|+|.+..
T Consensus 168 ~~-~~~~vVIDSIq~ 181 (454)
T TIGR00416 168 EE-NPQACVIDSIQT 181 (454)
T ss_pred hc-CCcEEEEecchh
Confidence 43 566899998753
No 371
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.027 Score=46.83 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.+++.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999999988876
No 372
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.29 E-value=0.086 Score=53.15 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=35.2
Q ss_pred CCCCCcchHHHHHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 155 DYVPLESSSKALNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.+..++|....+..+.+.+. .....-|.|+|..|+||++||+.++...
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s 251 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRS 251 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhC
Confidence 34467888777777776654 2233457899999999999999987653
No 373
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.29 E-value=0.0036 Score=53.69 Aligned_cols=24 Identities=38% Similarity=0.900 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+|+|.|.+|+||||||+.+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998875
No 374
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.29 E-value=0.011 Score=56.81 Aligned_cols=46 Identities=28% Similarity=0.402 Sum_probs=35.1
Q ss_pred CcchHHHHHHHHHHhcc--------------CCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 159 LESSSKALNSIMKLLKD--------------EKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
++|.++.++.+...+.. ...+.|.++||+|+|||++|+.+......
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 67777777776554432 12468999999999999999999998753
No 375
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.28 E-value=0.055 Score=51.19 Aligned_cols=88 Identities=20% Similarity=0.154 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh---hCCCCCceEEEEEcC---CHHHHHHHHHHHhcCccc----------ccc
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT---IAPYDKAHVIVAESS---DLRRIQDKIAELLKFKIE----------EEN 240 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~F~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~----------~~~ 240 (385)
...++-|+|++|+|||+|+.+++-.... .... +..++|++.. +..+ +.++++.++.... ..+
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~-~~~vvyIdTE~tF~peR-l~~ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGG-NGKVAYIDTEGTFRPDR-IVPIAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCC-CceEEEEEcCCCCCHHH-HHHHHHHcCCChhhhcCeEEEecCCC
Confidence 4578889999999999999998643221 1111 1277898887 3444 4446666654211 012
Q ss_pred HHH---HHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 241 ELQ---RRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 241 ~~~---~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
.++ ....+...+... +--|||+|.+-
T Consensus 203 ~e~~~~~l~~l~~~i~~~-~~~LvVIDSit 231 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEE-PFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCEEEEeCcH
Confidence 222 233343445442 45688999875
No 376
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.27 E-value=0.0062 Score=52.35 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS 219 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs 219 (385)
.+++.|+||.|+|||||++.+.+.... .|. ..++.+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~--~~~--~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD--KFG--RVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT--TEE--EEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc--ccc--cceeeccc
Confidence 478999999999999999999998663 355 44444443
No 377
>PTZ00185 ATPase alpha subunit; Provisional
Probab=96.26 E-value=0.036 Score=54.57 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=52.8
Q ss_pred ceEEEEEcCCCCchHHHH-HHHHHHhhhh-----CCCCCceEEEEEcC-CHHHHHHHHHHHhcCc-----------cccc
Q 038663 178 VNIIGVQGPGGVGKSTLM-EQLAKQIDTI-----APYDKAHVIVAESS-DLRRIQDKIAELLKFK-----------IEEE 239 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~-----~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~-----------~~~~ 239 (385)
..-++|.|..|+|||+|| -.+.+..... .+-. .++++.++ ..+++.. +.+.|... ....
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~--v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAV--ISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCC--EEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCC
Confidence 457899999999999996 6667664221 1223 67788887 3333332 44443221 0111
Q ss_pred cHH------HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 240 NEL------QRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 240 ~~~------~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
+.. -..-.+-+++++.++..|+|+||+-.
T Consensus 266 p~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 111 12345667776666999999999864
No 378
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.26 E-value=0.008 Score=52.65 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
..+++.|.|+.|.||||+.+.+.-.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998754
No 379
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.26 E-value=0.045 Score=50.14 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAEL 231 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~ 231 (385)
..++.|.|++|+|||||+.++......... . .++|++.. +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g-~--~vl~iS~E~~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHG-V--RVGTISLEEPVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcC-c--eEEEEEcccCHHHHHHHHHHH
Confidence 458899999999999999999877542211 2 67888887 666666665444
No 380
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.26 E-value=0.033 Score=50.73 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS 219 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs 219 (385)
...++.|.|++|+|||+|+.++....... . . .+++++..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-G-e--~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR-G-N--PVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC-C-C--cEEEEEec
Confidence 45799999999999999999986654221 1 2 55666665
No 381
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.25 E-value=0.0035 Score=51.93 Aligned_cols=23 Identities=48% Similarity=0.632 Sum_probs=20.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
++.|+|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998874
No 382
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.25 E-value=0.0034 Score=53.70 Aligned_cols=24 Identities=46% Similarity=0.714 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
++++|+|++|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999854
No 383
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.25 E-value=0.004 Score=54.51 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|+|+|++|+|||||++.+.....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 346899999999999999999998753
No 384
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=96.25 E-value=0.023 Score=55.82 Aligned_cols=89 Identities=21% Similarity=0.259 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC--------------cccc
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF--------------KIEE 238 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~--------------~~~~ 238 (385)
...-++|.|.+|+|||||+..+....... +=+ .++++-++ ...+++..+...-.. ....
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~d--v~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd 236 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGG--VSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMN 236 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHh-cCC--eEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCC
Confidence 34578999999999999999988774321 114 77777777 455666655541100 0011
Q ss_pred ccH------HHHHHHHHHHHHhcCC-cEEEEEeCCCc
Q 038663 239 ENE------LQRRATLAKRLRERTK-KVLIILDDVRE 268 (385)
Q Consensus 239 ~~~------~~~~~~l~~~l~~~~k-r~LlVlDdv~~ 268 (385)
.+. ....-.+-+++++.++ ++||++||+-.
T Consensus 237 ~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 237 EPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 111 1234457788876434 99999999854
No 385
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.25 E-value=0.0059 Score=54.05 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
+++.|+|+.|.||||+.+.+.-
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 386
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.24 E-value=0.017 Score=46.19 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=28.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS 219 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs 219 (385)
.+.|.|+.|+|||+.+.............. ..+|++..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~--~~lv~~p~ 39 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGG--QVLVLAPT 39 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCC--CEEEEcCc
Confidence 578999999999988888887765433334 66777666
No 387
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.24 E-value=0.0035 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
+|+|.|.+|+||||||+.+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 388
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.23 E-value=0.053 Score=50.91 Aligned_cols=28 Identities=39% Similarity=0.509 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
+..++.++|++|+||||++..+......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4679999999999999999999988764
No 389
>PRK06217 hypothetical protein; Validated
Probab=96.23 E-value=0.0038 Score=53.69 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.|.|.|++|+|||||++.+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998865
No 390
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.23 E-value=0.0056 Score=54.29 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH-HhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCc----cccccHHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK-QIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFK----IEEENELQRRATLAKR 251 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~-~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~----~~~~~~~~~~~~l~~~ 251 (385)
..+++.|.|+.|.||||+.+.+.- ...... . +..|..-. .-.++.+|...++.. .....-..-...+...
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~--G--~~v~a~~~-~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~i 104 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQI--G--SFVPASSA-TLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHI 104 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhC--C--CEEEcCce-EEeccceEEEEecCccccccccchHHHHHHHHHHH
Confidence 456889999999999999999987 322211 1 22221100 000011111111100 0001111123344455
Q ss_pred HHhcCCcEEEEEeCCCcchh-------hhhhcCCCCCCCCCeEEEEeeCChhhhhhc
Q 038663 252 LRERTKKVLIILDDVREKIN-------LAVSGIPYGEEGNRCKVIVTSRRLDVCSKM 301 (385)
Q Consensus 252 l~~~~kr~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~iivTtr~~~v~~~~ 301 (385)
++...++-|++||+.....+ ...+...+... .++.+|++|+...++...
T Consensus 105 l~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 105 LSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 55444799999999743211 01111222222 467899999998875543
No 391
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.22 E-value=0.0087 Score=56.03 Aligned_cols=47 Identities=26% Similarity=0.480 Sum_probs=41.3
Q ss_pred CCcchHHHHHHHHHHhc------cCCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 158 PLESSSKALNSIMKLLK------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
.|+|.++.+++|++.+. +..-+++.++||.|.|||||++.+-+-++.
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 68999999999999986 245679999999999999999999987763
No 392
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.22 E-value=0.019 Score=56.00 Aligned_cols=86 Identities=24% Similarity=0.393 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
....++|.|+.|+|||||++.+...... + ..+...++ ...++.+.+...-.. .....+.
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d--~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~ 235 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----D--VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERA 235 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----C--eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHH
Confidence 4568999999999999999999865432 2 22333333 444444444333211 0111111
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
....-.+-+++++.++++|+++||+-.
T Consensus 236 ~a~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 236 KAAYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122345667776666999999999854
No 393
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.21 E-value=0.006 Score=55.74 Aligned_cols=120 Identities=23% Similarity=0.268 Sum_probs=65.1
Q ss_pred HHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHH-HHHHHHhcCccccccHHHH
Q 038663 166 LNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQ-DKIAELLKFKIEEENELQR 244 (385)
Q Consensus 166 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~-~~i~~~l~~~~~~~~~~~~ 244 (385)
.+.|..++ .....++.|.|+.|+||||+++.+.+.... .. .. .+.+.+..++. ..+ .++. .........
T Consensus 69 ~~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~i~~---~~--~~-iitiEdp~E~~~~~~-~q~~--v~~~~~~~~ 138 (264)
T cd01129 69 LEIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSELNT---PE--KN-IITVEDPVEYQIPGI-NQVQ--VNEKAGLTF 138 (264)
T ss_pred HHHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhhhCC---CC--Ce-EEEECCCceecCCCc-eEEE--eCCcCCcCH
Confidence 33443333 344568999999999999999988776532 11 11 12333221111 100 0111 111111234
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhhh
Q 038663 245 RATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCSK 300 (385)
Q Consensus 245 ~~~l~~~l~~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~ 300 (385)
...+...++. ..=.|+++++.+.+....+.... ..|-.++-|.+..++...
T Consensus 139 ~~~l~~~lR~--~PD~i~vgEiR~~e~a~~~~~aa---~tGh~v~tTlHa~~~~~a 189 (264)
T cd01129 139 ARGLRAILRQ--DPDIIMVGEIRDAETAEIAVQAA---LTGHLVLSTLHTNDAPGA 189 (264)
T ss_pred HHHHHHHhcc--CCCEEEeccCCCHHHHHHHHHHH---HcCCcEEEEeccCCHHHH
Confidence 5667777777 78899999998876544322221 123346666676665443
No 394
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.21 E-value=0.0055 Score=52.21 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...+|.|+|++|+||||+++.+......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999998753
No 395
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.20 E-value=0.0076 Score=50.34 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=28.6
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 165 ALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.+++|.+.+.+ ++++++|++|+|||||.+.+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 34666676665 699999999999999999998753
No 396
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.20 E-value=0.018 Score=55.85 Aligned_cols=86 Identities=24% Similarity=0.373 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
....++|+|+.|+|||||++.+...... + ..+...++ ...++....+.+-+. .....+.
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~~----~--~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~ 209 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAKA----D--INVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRL 209 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----C--eEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHH
Confidence 4568999999999999999988865432 2 33333344 333444433332111 1111111
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
....-.+-+++++.++++|+++||+-.
T Consensus 210 ~~~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 210 KAAFTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 122345667776666999999999854
No 397
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.19 E-value=0.023 Score=48.09 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=41.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCC
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTK 257 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 257 (385)
++.|.|++|+|||++|.++..... . ..+++... --.++...|..............+....+.+.+....+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~-----~--~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG-----G--PVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC-----C--CeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 368999999999999999986521 2 33444433 11223333322211111111222233445555543212
Q ss_pred cEEEEEeCC
Q 038663 258 KVLIILDDV 266 (385)
Q Consensus 258 r~LlVlDdv 266 (385)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999986
No 398
>PRK14530 adenylate kinase; Provisional
Probab=96.19 E-value=0.0046 Score=54.69 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+.|.|+|++|+||||+++.+.+...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 399
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=96.18 E-value=0.028 Score=55.41 Aligned_cols=87 Identities=14% Similarity=0.217 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCchHHHH-HHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccHH--
Q 038663 177 KVNIIGVQGPGGVGKSTLM-EQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENEL-- 242 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~~-- 242 (385)
...-++|.|.+|+|||||| ..+.+... -+ ..++++.++ ...++...+...-.. .....+..
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~~----~d-v~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r 235 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQKG----RN-VLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQ 235 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhcC----CC-cEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHH
Confidence 3457899999999999995 57777533 22 136777777 444455544433211 11111111
Q ss_pred ----HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 243 ----QRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 243 ----~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
.....+-+++++.++++||++||+..
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr 265 (497)
T TIGR03324 236 YIAPYAATSIGEHFMEQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcChhH
Confidence 12344667777666999999999853
No 400
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.17 E-value=0.014 Score=56.11 Aligned_cols=40 Identities=23% Similarity=0.467 Sum_probs=32.6
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 165 ALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
..+.+++.+...+...+.|.|+||+|||+|.+.+.+..+.
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 3455666666666788999999999999999999998764
No 401
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.17 E-value=0.0077 Score=52.62 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLA 199 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~ 199 (385)
-+++.|.|+.|+|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3689999999999999999988
No 402
>PRK13949 shikimate kinase; Provisional
Probab=96.17 E-value=0.0048 Score=52.34 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+.|.|+|++|+||||+++.+.+...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999999875
No 403
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.15 Score=48.27 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=34.4
Q ss_pred CCcchHHHHHHHHHHhc------------cCCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 158 PLESSSKALNSIMKLLK------------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
++.|-++.++.|.+... -...+-+.++||+|+|||-||+.|+.+...
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 45566655555555442 124578999999999999999999998774
No 404
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.17 E-value=0.004 Score=50.89 Aligned_cols=24 Identities=50% Similarity=0.909 Sum_probs=21.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++|+|++|+|||||++.+.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998753
No 405
>PRK14527 adenylate kinase; Provisional
Probab=96.15 E-value=0.0057 Score=52.98 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|.|+|++|+||||+|+.+.+...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988765
No 406
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.15 E-value=0.0053 Score=51.98 Aligned_cols=24 Identities=38% Similarity=0.765 Sum_probs=20.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHhhh
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
|.|.|++|+|||||++.+.+..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999998853
No 407
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=96.15 E-value=0.014 Score=56.83 Aligned_cols=86 Identities=21% Similarity=0.356 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
....++|+|++|+|||||++.+...... + .++...+. +..++...+...-.. ...+.+.
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~~~~----d--~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~ 247 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARYTQA----D--VIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRM 247 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCCCCC----C--EEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHH
Confidence 4568999999999999999988865432 2 22222233 555555444322111 1111111
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
....-.+-+++++.++++|+++||+-.
T Consensus 248 ~~~~~a~tiAEyfrd~G~~Vll~~DslTr 276 (455)
T PRK07960 248 QGAAYATRIAEDFRDRGQHVLLIMDSLTR 276 (455)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEecchhH
Confidence 112344667776666999999999854
No 408
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.13 E-value=0.0098 Score=54.56 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=29.5
Q ss_pred HHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 169 IMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 169 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...++...+..++.|+|.+|+|||||+..+.+.+..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 334444567889999999999999999999998764
No 409
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.13 E-value=0.0037 Score=57.30 Aligned_cols=36 Identities=25% Similarity=0.531 Sum_probs=26.7
Q ss_pred HHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 167 NSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 167 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+++.+... .+-+.++|++|+|||++++.......
T Consensus 23 ~~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 23 SYLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp HHHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred HHHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccCC
Confidence 4455555444 35668999999999999999887654
No 410
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.13 E-value=0.022 Score=54.22 Aligned_cols=85 Identities=29% Similarity=0.425 Sum_probs=60.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCc-------ccccc-----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFK-------IEEEN----- 240 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~-------~~~~~----- 240 (385)
...-++|..-+|+|||||...+.+..+ ++ ..+..-++ ..++.+.+.+..-+.. ....+
T Consensus 162 ~GQRiGIFAgsGVGKStLLgMiar~t~----aD--v~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~ 235 (441)
T COG1157 162 KGQRIGIFAGSGVGKSTLLGMIARNTE----AD--VNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRL 235 (441)
T ss_pred cCceeEEEecCCCcHHHHHHHHhcccc----CC--EEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHH
Confidence 445789999999999999999998655 66 66655666 6666666665554331 11111
Q ss_pred -HHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 241 -ELQRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 241 -~~~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
....+..+-+++++.++++|+++|-+-
T Consensus 236 ~aa~~At~IAEyFRDqG~~VLL~mDSlT 263 (441)
T COG1157 236 KAAFTATTIAEYFRDQGKRVLLIMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeecHH
Confidence 223456788999888899999999884
No 411
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.13 E-value=0.0039 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHhh
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
|.|+|++|+||||+|+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999998753
No 412
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.12 E-value=0.005 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLA 199 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~ 199 (385)
...++|+|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 413
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.12 E-value=0.0048 Score=53.50 Aligned_cols=24 Identities=42% Similarity=0.653 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
...|++|+||+|+|||||.+.+..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 456999999999999999999874
No 414
>PRK13947 shikimate kinase; Provisional
Probab=96.12 E-value=0.0049 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.|.|+|++|+||||+++.+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999875
No 415
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.12 E-value=0.051 Score=52.82 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
.+.+|.++|++|+||||++..++..+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999877653
No 416
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=96.12 E-value=0.037 Score=53.99 Aligned_cols=86 Identities=23% Similarity=0.355 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccHH---
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENEL--- 242 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~~--- 242 (385)
....++|+|++|+|||||.+.+..... -+ ......+. +..++..+....... .....+..
T Consensus 144 ~Gq~~~I~G~sG~GKStLl~~I~~~~~----~~--~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~ 217 (422)
T TIGR02546 144 EGQRIGIFAGAGVGKSTLLGMIARGAS----AD--VNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERL 217 (422)
T ss_pred CCCEEEEECCCCCChHHHHHHHhCCCC----CC--EEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHH
Confidence 456889999999999999999987544 22 33344443 555555444332211 11111111
Q ss_pred ---HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 243 ---QRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 243 ---~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
.....+.+++.+.+++.|+++|++..
T Consensus 218 ~~~~~a~~~AE~f~~~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 218 KAAYTATAIAEYFRDQGKRVLLMMDSLTR 246 (422)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCchH
Confidence 12334566676656899999999863
No 417
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.028 Score=49.25 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...+.+|.||.|+|||||+..+.-++
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998543
No 418
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.12 E-value=0.016 Score=56.11 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=33.8
Q ss_pred CcchHHHHHHHHHHhc-------c---C--------CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 159 LESSSKALNSIMKLLK-------D---E--------KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~-------~---~--------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
++|.++.++.+...+. . . ....+.++||+|+|||+||+.+.....
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 5788887777765441 1 0 125799999999999999999997664
No 419
>PTZ00035 Rad51 protein; Provisional
Probab=96.11 E-value=0.088 Score=49.85 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCC--CCceEEEEEcC---CHHHHHHHHHHHhcCccc----------cccH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPY--DKAHVIVAESS---DLRRIQDKIAELLKFKIE----------EENE 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~----------~~~~ 241 (385)
...++.|+|++|+|||+|+.++.-....-... .++.++|+... +..+ +.++++.++.... ..+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCCH
Confidence 45799999999999999999987543310000 11256687776 2333 4455655543211 0112
Q ss_pred HHHH---HHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 LQRR---ATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 ~~~~---~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
++.. ..+...+... +--|||+|-+..
T Consensus 196 e~~~~~l~~~~~~l~~~-~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEE-RFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhcc-CccEEEEECcHH
Confidence 2222 2233334332 556899998753
No 420
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.10 E-value=0.0054 Score=52.91 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
..++|.|+||+|+|||||++.+.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998764
No 421
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.10 E-value=0.0048 Score=53.21 Aligned_cols=25 Identities=32% Similarity=0.635 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++.|+||+|+|||||++.+.....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999977543
No 422
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=96.10 E-value=0.019 Score=56.12 Aligned_cols=86 Identities=24% Similarity=0.382 Sum_probs=49.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE---- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~---- 241 (385)
....++|+|+.|+|||||++.+...... + ......+. ...++.......-.. .....+.
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~~~~----~--~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~ 235 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARNTEA----D--VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRL 235 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC----C--EEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHH
Confidence 3457899999999999999988875432 2 33333443 344444333322111 1111111
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 --LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 --~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
....-.+-+++.+.++++|+++||+-.
T Consensus 236 ~~~~~a~t~AE~frd~G~~Vll~~DslTr 264 (440)
T TIGR01026 236 KGAYVATAIAEYFRDQGKDVLLLMDSVTR 264 (440)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 112334556676556999999999853
No 423
>PRK14529 adenylate kinase; Provisional
Probab=96.09 E-value=0.02 Score=50.75 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=46.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCC
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTK 257 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~k 257 (385)
|.|.|++|+||||+++.+.+.+.. .+.+.+..+.-.+. ......++++.. ....+++-....+.+.+.+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~-~~is~gdllr~~i~~~t~lg~~i~~~i~~----G~lvpdei~~~lv~~~l~~~~- 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL-AHIESGAIFREHIGGGTELGKKAKEYIDR----GDLVPDDITIPMILETLKQDG- 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-CCcccchhhhhhccCCChHHHHHHHHHhc----cCcchHHHHHHHHHHHHhccC-
Confidence 788999999999999999988752 12220011111111 122222222221 222334445566777776643
Q ss_pred cEEEEEeCCCcc
Q 038663 258 KVLIILDDVREK 269 (385)
Q Consensus 258 r~LlVlDdv~~~ 269 (385)
.--+|||..-..
T Consensus 77 ~~g~iLDGfPRt 88 (223)
T PRK14529 77 KNGWLLDGFPRN 88 (223)
T ss_pred CCcEEEeCCCCC
Confidence 456899998644
No 424
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.08 E-value=0.0074 Score=53.04 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=27.6
Q ss_pred HhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 172 LLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 172 ~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+.+.+.++|+++|+.|+|||||...+.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34466899999999999999999999998754
No 425
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.08 E-value=0.011 Score=51.29 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=32.0
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHH
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
+..++|.+..+..|.-...+ ...+.++|++|+|||++|+.+..-
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHh
Confidence 45678887777766655554 368999999999999999999853
No 426
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.07 E-value=0.0057 Score=48.21 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHhh
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999997654
No 427
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.07 E-value=0.0056 Score=50.75 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=21.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHhh
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
|.|+|++|+||||+|+.+.+.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 428
>PRK06820 type III secretion system ATPase; Validated
Probab=96.06 E-value=0.04 Score=53.75 Aligned_cols=85 Identities=28% Similarity=0.380 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHh-cC----------ccccccH---
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELL-KF----------KIEEENE--- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l-~~----------~~~~~~~--- 241 (385)
....++|+|++|+|||||++.+..... -+ ..+...+. ..++ ...+.+.. .. ...+.+.
T Consensus 162 ~Gqri~I~G~sG~GKStLl~~I~~~~~----~d--v~V~~~iGergrE-v~ef~e~~l~~~~~~rtvvv~atsd~p~~~r 234 (440)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLGMLCADSA----AD--VMVLALIGERGRE-VREFLEQVLTPEARARTVVVVATSDRPALER 234 (440)
T ss_pred CCCEEEEECCCCCChHHHHHHHhccCC----CC--EEEEEEEccChHH-HHHHHHHhhccCCceeEEEEEeCCCCCHHHH
Confidence 345889999999999999998876433 22 44444555 3233 22232222 11 0111111
Q ss_pred ---HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 ---LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 ---~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
......+.+++++.++++|+++||+..
T Consensus 235 ~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr 264 (440)
T PRK06820 235 LKGLSTATTIAEYFRDRGKKVLLMADSLTR 264 (440)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccchhH
Confidence 112345667777666999999999854
No 429
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.05 E-value=0.015 Score=50.67 Aligned_cols=87 Identities=22% Similarity=0.322 Sum_probs=44.6
Q ss_pred cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHH---HHHHHHhcCccc---cccHHHHHHHH
Q 038663 175 DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQ---DKIAELLKFKIE---EENELQRRATL 248 (385)
Q Consensus 175 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~---~~i~~~l~~~~~---~~~~~~~~~~l 248 (385)
.+++.++.|.|++|+||||++..+..... .. ..+.+.....+..+ .++...-..... ......+...+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~--~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG----GG--GIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT---SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc----CC--CeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 35678899999999999999999988763 12 34444444222221 222222111111 11223355666
Q ss_pred HHHHHhcCCcEEEEEeCCCcc
Q 038663 249 AKRLRERTKKVLIILDDVREK 269 (385)
Q Consensus 249 ~~~l~~~~kr~LlVlDdv~~~ 269 (385)
.+..-. +++=+|+|..-..
T Consensus 86 ~~~a~~--~~~nii~E~tl~~ 104 (199)
T PF06414_consen 86 IEYAIE--NRYNIIFEGTLSN 104 (199)
T ss_dssp HHHHHH--CT--EEEE--TTS
T ss_pred HHHHHH--cCCCEEEecCCCC
Confidence 666667 7888888987644
No 430
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.04 E-value=0.059 Score=52.45 Aligned_cols=87 Identities=23% Similarity=0.353 Sum_probs=53.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCc-------ccccc-----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFK-------IEEEN----- 240 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~-------~~~~~----- 240 (385)
....++|+|++|+|||||++.+....+. + ......+. ...+++...+..-+.. ....+
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~--~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ 228 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA----D--INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQL 228 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC----C--eEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHH
Confidence 4468899999999999999999876542 1 22222333 4555555444432211 11111
Q ss_pred -HHHHHHHHHHHHHhcCCcEEEEEeCCCcc
Q 038663 241 -ELQRRATLAKRLRERTKKVLIILDDVREK 269 (385)
Q Consensus 241 -~~~~~~~l~~~l~~~~kr~LlVlDdv~~~ 269 (385)
.......+.+++++.+++.||++||+-..
T Consensus 229 ra~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 229 RAAKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 12234456677766669999999998644
No 431
>PRK14526 adenylate kinase; Provisional
Probab=96.04 E-value=0.027 Score=49.60 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.4
Q ss_pred EEEEcCCCCchHHHHHHHHHHhh
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+.|+|++|+||||+++.+.....
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999987654
No 432
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.04 E-value=0.0054 Score=54.10 Aligned_cols=24 Identities=38% Similarity=0.662 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
....++|+||+|+|||||...+.-
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999983
No 433
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.03 E-value=0.0084 Score=56.50 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=37.9
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
+..++|.+..++.+.-.+.+.+...+.+.|++|+||||+|+.+..-.
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 45578999888877765554445679999999999999999998765
No 434
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.02 E-value=0.0079 Score=52.45 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=25.5
Q ss_pred cCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 175 DEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 175 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+..++.|+|++|+|||||++.+...+.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35668999999999999999999998764
No 435
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.0055 Score=54.06 Aligned_cols=24 Identities=42% Similarity=0.621 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
...+++|+|++|+|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 456899999999999999999984
No 436
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.01 E-value=0.0067 Score=51.63 Aligned_cols=26 Identities=46% Similarity=0.575 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...|.|+|+.|+||||+++.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35689999999999999999998754
No 437
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.00 E-value=0.019 Score=55.26 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=36.0
Q ss_pred CcchHHHHHHHHHHhcc--------------CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 159 LESSSKALNSIMKLLKD--------------EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
++|.+..++.+..++.. ...+.+.++|++|+|||+||+.+.....
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 67888888777766632 0246899999999999999999998865
No 438
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=95.99 E-value=0.038 Score=54.83 Aligned_cols=87 Identities=20% Similarity=0.275 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCCchHHHH-HHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH---
Q 038663 177 KVNIIGVQGPGGVGKSTLM-EQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE--- 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~--- 241 (385)
...-++|.|.+|+|||+|| ..+.+... .+ ..++++.++ ...++...+...-.. .....+.
T Consensus 160 rGQr~~I~g~~g~GKt~Lal~~i~~~~~----~d-v~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r 234 (501)
T TIGR00962 160 RGQRELIIGDRQTGKTAVAIDTIINQKD----SD-VYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQ 234 (501)
T ss_pred cCCEEEeecCCCCCccHHHHHHHHhhcC----CC-eEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHH
Confidence 3457899999999999995 56665432 23 134777777 444455555443211 1111111
Q ss_pred ---HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 ---LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 ---~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
....-.+-+++++.++++||++||+..
T Consensus 235 ~~a~~~a~aiAEyfrd~G~~VLlv~Ddltr 264 (501)
T TIGR00962 235 YLAPYTGCTMAEYFRDNGKHALIIYDDLSK 264 (501)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecchHH
Confidence 112345667777666999999999853
No 439
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.99 E-value=0.0067 Score=53.27 Aligned_cols=26 Identities=27% Similarity=0.652 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHH
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+.+.|+|++|+|||||++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35678999999999999999999754
No 440
>PRK13975 thymidylate kinase; Provisional
Probab=95.98 E-value=0.007 Score=52.52 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
..|+|.|+.|+||||+++.+.+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998763
No 441
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.97 E-value=0.066 Score=53.70 Aligned_cols=26 Identities=42% Similarity=0.735 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
....|+|+|+.|+|||||.+.+....
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~ 372 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGEL 372 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 34578999999999999999997654
No 442
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.13 Score=46.79 Aligned_cols=99 Identities=13% Similarity=0.230 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEE
Q 038663 149 GDLATPDYVPLESSSKALNSIMKLLK----D---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIV 215 (385)
Q Consensus 149 ~~~~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~w 215 (385)
.-.|...+.++-|-+..+++|.+... . ..++-+.++|++|.|||-||+.|+|.... .|-
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA--TFl------ 248 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA--TFL------ 248 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch--hhh------
Confidence 34566667777788888888887664 1 14567889999999999999999997653 254
Q ss_pred EEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 216 AESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 216 v~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
+-+-.++++.-. .+...+...+.+.-... -+.++++|++.
T Consensus 249 ------RvvGseLiQkyl-----GdGpklvRqlF~vA~e~-apSIvFiDEId 288 (440)
T KOG0726|consen 249 ------RVVGSELIQKYL-----GDGPKLVRELFRVAEEH-APSIVFIDEID 288 (440)
T ss_pred ------hhhhHHHHHHHh-----ccchHHHHHHHHHHHhc-CCceEEeehhh
Confidence 112222222211 11223445555544443 67788888875
No 443
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.94 E-value=0.036 Score=54.39 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=51.1
Q ss_pred CceEEEEEcCCCCchHHHH-HHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccHH--
Q 038663 177 KVNIIGVQGPGGVGKSTLM-EQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENEL-- 242 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~~-- 242 (385)
...-++|.|.+|+|||+|| ..+.+... -+ ..++++.++ ...++...+...-.. .....+..
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q~~----~d-v~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r 214 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQKG----QN-VICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQ 214 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhccc----CC-eEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHH
Confidence 3457899999999999995 44555422 22 244777777 444455544432111 11111111
Q ss_pred ----HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 243 ----QRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 243 ----~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
-..-.+-++++..++++|+|+||+-.
T Consensus 215 ~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr 244 (485)
T CHL00059 215 YLAPYTGAALAEYFMYRGRHTLIIYDDLSK 244 (485)
T ss_pred HHHHHHHhhHHHHHHHcCCCEEEEEcChhH
Confidence 12334667777666999999999854
No 444
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.039 Score=52.32 Aligned_cols=128 Identities=22% Similarity=0.309 Sum_probs=72.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERT 256 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 256 (385)
..+.|..+||+|.|||-.|+.+..+.. .+ +-+ .+-+++.- -..+....+..|..+-+...
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SG----lD--YA~-mTGGDVAP-------------lG~qaVTkiH~lFDWakkS~ 442 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSG----LD--YAI-MTGGDVAP-------------LGAQAVTKIHKLFDWAKKSR 442 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcC----Cc--eeh-hcCCCccc-------------cchHHHHHHHHHHHHHhhcc
Confidence 457899999999999999999998765 22 111 00001100 01112223455666666555
Q ss_pred CcEEEEEeCCCcc--------------hhhhhhcCCCCCCCCCeEE-EEeeCChhhhhhcC---CceEEcCCCCHHHHHH
Q 038663 257 KKVLIILDDVREK--------------INLAVSGIPYGEEGNRCKV-IVTSRRLDVCSKMS---DVTVQIEELGEEDRLK 318 (385)
Q Consensus 257 kr~LlVlDdv~~~--------------~~~~~l~~~~~~~~~gs~i-ivTtr~~~v~~~~~---~~~~~l~~L~~~~~~~ 318 (385)
+-.||++|+...- ..++.+...-.+.++...+ +.|.|..+.-.... +.+++++.-..+|-..
T Consensus 443 rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfk 522 (630)
T KOG0742|consen 443 RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFK 522 (630)
T ss_pred cceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHH
Confidence 7788999987421 1234443333344444433 44555555543333 6677777667777766
Q ss_pred HHHHhh
Q 038663 319 LFKQIA 324 (385)
Q Consensus 319 lf~~~~ 324 (385)
|+.-.+
T Consensus 523 ll~lYl 528 (630)
T KOG0742|consen 523 LLNLYL 528 (630)
T ss_pred HHHHHH
Confidence 665443
No 445
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.91 E-value=0.0078 Score=50.27 Aligned_cols=26 Identities=35% Similarity=0.680 Sum_probs=23.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
|+.|+|+.|+|||||+..+....+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999988643
No 446
>PRK13695 putative NTPase; Provisional
Probab=95.91 E-value=0.013 Score=49.93 Aligned_cols=25 Identities=44% Similarity=0.804 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
.++|+|++|+|||||++.+++....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988654
No 447
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.89 E-value=0.096 Score=44.92 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
....++.|.|++|+||||+++.+.....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4457999999999999999999998875
No 448
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.89 E-value=0.029 Score=54.84 Aligned_cols=88 Identities=25% Similarity=0.380 Sum_probs=50.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEE-cC--CHHHHHHHHHHH--hcC-----cccccc-----
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAE-SS--DLRRIQDKIAEL--LKF-----KIEEEN----- 240 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~-vs--~~~~l~~~i~~~--l~~-----~~~~~~----- 240 (385)
.....++|+|+.|+|||||++.+...... +. ..++.. .. +..++....+.. +.. .....+
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~-gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~ 230 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTSA----DL-NVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRI 230 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCC----Ce-EEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHH
Confidence 34578999999999999999988875442 20 222221 11 445444332221 111 111111
Q ss_pred -HHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 241 -ELQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 241 -~~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
.....-.+-+++++.++++||++||+-.
T Consensus 231 ~~~~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 231 KGAYTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 1123345667776666999999999853
No 449
>PLN02200 adenylate kinase family protein
Probab=95.87 E-value=0.0087 Score=53.64 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|.|.|++|+||||+++.+.+...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999987654
No 450
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.019 Score=52.46 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
.+..+.|||++|.|||-||+.|+....+.
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 45689999999999999999999988753
No 451
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=1.3 Score=39.70 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+.++-+.++||+|+|||.||+.|.++..
T Consensus 187 dpprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 4567889999999999999999999865
No 452
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.85 E-value=0.0079 Score=51.99 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|+|-||=|+||||||+.+.++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999987
No 453
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.84 E-value=0.068 Score=47.45 Aligned_cols=48 Identities=23% Similarity=0.155 Sum_probs=34.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKI 228 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i 228 (385)
...++.|.|++|+|||+++.++....-... . .+++++.. +...+...+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g--~--~~~y~s~e~~~~~l~~~~ 63 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNG--E--KAMYISLEEREERILGYA 63 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC--C--eEEEEECCCCHHHHHHHH
Confidence 357999999999999999999876643221 2 66777877 555555443
No 454
>PRK05439 pantothenate kinase; Provisional
Probab=95.84 E-value=0.031 Score=52.00 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...-+|+|.|++|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567999999999999999999988765
No 455
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.84 E-value=0.014 Score=49.52 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 160 ESSSKALNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 160 ~gr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+|.+..+.++.+.+. .....-|.|+|..|+||+.+|+.+++...
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 455566666666554 12235667999999999999999998543
No 456
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.83 E-value=0.0092 Score=51.94 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|.|.|++|+||||+|+.+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998753
No 457
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.83 E-value=0.0081 Score=54.11 Aligned_cols=25 Identities=52% Similarity=0.751 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+||.|+|||||.+.++.-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4579999999999999999999964
No 458
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.83 E-value=0.01 Score=51.16 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~ 200 (385)
++.|+|+.|.||||+++.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999984
No 459
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=95.82 E-value=0.043 Score=54.26 Aligned_cols=87 Identities=17% Similarity=0.281 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCchHHHH-HHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCc-------ccccc-HH-
Q 038663 177 KVNIIGVQGPGGVGKSTLM-EQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFK-------IEEEN-EL- 242 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~-------~~~~~-~~- 242 (385)
...-++|.|.+|+|||||| ..+.+... -+ ..++++.++ ...++...+...-... ....+ ..
T Consensus 161 rGQR~~I~g~~g~GKt~Lal~~i~~~~~----~d-v~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r 235 (502)
T PRK13343 161 RGQRELIIGDRQTGKTAIAIDAIINQKD----SD-VICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQ 235 (502)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHhhcC----CC-EEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHH
Confidence 3457899999999999995 66665422 22 134777777 3444444443321110 11111 11
Q ss_pred ----HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 243 ----QRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 243 ----~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
.....+-+++++.+++.|||+||+..
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr 265 (502)
T PRK13343 236 YLAPFAGCAIAEYFRDQGQDALIVYDDLSK 265 (502)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecchHH
Confidence 12334667777666999999999854
No 460
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.81 E-value=0.13 Score=48.35 Aligned_cols=87 Identities=21% Similarity=0.177 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh---hC-CCCCceEEEEEcC---CHHHHHHHHHHHhcCccc----------cc
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT---IA-PYDKAHVIVAESS---DLRRIQDKIAELLKFKIE----------EE 239 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~F~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~----------~~ 239 (385)
...++.|+|++|+|||+|+..++..... .. .-. .++|++.. +..+ +.++++.++.... ..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~--~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEG--KALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCc--eEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecC
Confidence 4579999999999999999998763221 11 112 56788776 3333 4445555443211 01
Q ss_pred cHHHH---HHHHHHHHHhcCCcEEEEEeCCC
Q 038663 240 NELQR---RATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 240 ~~~~~---~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
+.++. ...+...+... +--|||+|.+-
T Consensus 172 ~~~~~~~~l~~~~~~~~~~-~~~LvVIDSI~ 201 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSES-RFALLIVDSAT 201 (316)
T ss_pred ChHHHHHHHHHHHHhhccC-CccEEEEECcH
Confidence 12222 22333334332 56689999874
No 461
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.81 E-value=0.0094 Score=50.94 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++.|+|++|+|||||++.+.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5889999999999999999998765
No 462
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.0076 Score=50.39 Aligned_cols=20 Identities=40% Similarity=0.720 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchHHHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLA 199 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~ 199 (385)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 463
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.78 E-value=0.0072 Score=49.05 Aligned_cols=26 Identities=42% Similarity=0.707 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+++|+|+.|+|||||.+.+.....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 46899999999999999999886543
No 464
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=95.77 E-value=0.05 Score=54.06 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCchHHHH-HHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccHH--
Q 038663 177 KVNIIGVQGPGGVGKSTLM-EQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENEL-- 242 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~~-- 242 (385)
...-++|.|.+|+|||+|| ..+.+... -+ ..++++.++ ...++...+...-.. .....+..
T Consensus 161 rGQr~~Ifg~~g~GKt~lal~~i~~~~~----~d-v~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r 235 (502)
T PRK09281 161 RGQRELIIGDRQTGKTAIAIDTIINQKG----KD-VICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQ 235 (502)
T ss_pred cCcEEEeecCCCCCchHHHHHHHHHhcC----CC-eEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHH
Confidence 3457899999999999994 55554432 22 134777777 444444444432111 11111111
Q ss_pred ----HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 243 ----QRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 243 ----~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
...-.+-++++..++++|+|+||+-.
T Consensus 236 ~~a~~~a~tiAEyfrd~G~~VLli~DdlTr 265 (502)
T PRK09281 236 YLAPYAGCAMGEYFMDNGKDALIVYDDLSK 265 (502)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCchH
Confidence 12334667777666999999999854
No 465
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.76 E-value=0.0078 Score=50.62 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=17.9
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~ 201 (385)
|+|+|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 466
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.73 E-value=0.0067 Score=48.39 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDTIAPYD 209 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 209 (385)
.+.|.|.+|+||||+|+.+...... .|.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~--~f~ 28 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL--SFK 28 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT----EE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC--cee
Confidence 3689999999999999999998763 354
No 467
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.73 E-value=0.088 Score=52.99 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHhccC--CceEEEEEcCCCCchHHHHHHHHHHhhhh-CCCCCceEEEEEcC-CHHHHHHHHHHHhcCcccc---
Q 038663 166 LNSIMKLLKDE--KVNIIGVQGPGGVGKSTLMEQLAKQIDTI-APYDKAHVIVAESS-DLRRIQDKIAELLKFKIEE--- 238 (385)
Q Consensus 166 ~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~~--- 238 (385)
+..|-+.|.++ ..+++.|.|++|+|||+|+.++....-.+ .. .++|++.. +..++...+.. ++.....
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge----~~lyis~ee~~~~i~~~~~~-~g~d~~~~~~ 91 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDE----PGVFVTFEESPEDIIRNVAS-FGWDLQKLID 91 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCC----CEEEEEccCCHHHHHHHHHH-cCCCHHHHhh
Q ss_pred ---------------------ccHHHHHHHHHHHHHhcCCcEEEEEeCC
Q 038663 239 ---------------------ENELQRRATLAKRLRERTKKVLIILDDV 266 (385)
Q Consensus 239 ---------------------~~~~~~~~~l~~~l~~~~kr~LlVlDdv 266 (385)
.+...+...+.+.+... +.-.+|||.+
T Consensus 92 ~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~-~~~~vVIDSl 139 (509)
T PRK09302 92 EGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKI-GAKRVVLDSI 139 (509)
T ss_pred CCeEEEEecCcccccccccccccHHHHHHHHHHHHHhh-CCCEEEECCH
No 468
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.73 E-value=0.054 Score=45.53 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=27.5
Q ss_pred ccCCceEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 174 KDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 174 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
...+..+|-+.|.+|+||||+|..+++.+...
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 35567899999999999999999999987643
No 469
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.72 E-value=0.029 Score=47.60 Aligned_cols=24 Identities=42% Similarity=0.448 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.++.|.|++|+||||+|..+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc
Confidence 368999999999999999998764
No 470
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.72 E-value=0.011 Score=49.45 Aligned_cols=28 Identities=32% Similarity=0.648 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
.++++|+|..|+|||||...+...++.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 4799999999999999999999988765
No 471
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.72 E-value=0.077 Score=48.31 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=41.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhc
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLK 233 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~ 233 (385)
.++.|-|.+|+|||++|.++..+.-.... . .+++++.. +..++...++....
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~--~vly~SlEm~~~~l~~R~la~~s 72 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGG-Y--PVLYFSLEMSEEELAARLLARLS 72 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTS-S--EEEEEESSS-HHHHHHHHHHHHH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcC-C--eEEEEcCCCCHHHHHHHHHHHhh
Confidence 58889999999999999999998765432 3 78888988 88888877776664
No 472
>PRK04182 cytidylate kinase; Provisional
Probab=95.72 E-value=0.0098 Score=50.69 Aligned_cols=24 Identities=42% Similarity=0.751 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+|.|.|+.|+||||+++.+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998765
No 473
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.71 E-value=0.088 Score=48.18 Aligned_cols=84 Identities=25% Similarity=0.288 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHHHH-hcC-----ccccccHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIAEL-LKF-----KIEEENELQRRAT 247 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~~~-l~~-----~~~~~~~~~~~~~ 247 (385)
..+++=|+|+.|+||||+|.+++-..... -. ..+|+... +... ..++... +.. +.......++...
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~--~a~fIDtE~~l~p~r-~~~l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GG--KAAFIDTEHALDPER-AKQLGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CC--eEEEEeCCCCCCHHH-HHHHHHhhhcceeEecCCCHHHHHHHHHH
Confidence 45788899999999999999988765422 23 77888877 3333 3334444 222 1111112223333
Q ss_pred HHHHHHhcCCcEEEEEeCCC
Q 038663 248 LAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 248 l~~~l~~~~kr~LlVlDdv~ 267 (385)
+...... +--|+|+|-+-
T Consensus 134 ~~~~~~~--~i~LvVVDSva 151 (279)
T COG0468 134 LARSGAE--KIDLLVVDSVA 151 (279)
T ss_pred HHHhccC--CCCEEEEecCc
Confidence 3333333 46789999874
No 474
>PLN02674 adenylate kinase
Probab=95.71 E-value=0.044 Score=49.23 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...|.|.|++|+||||+++.+.+.+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 35688999999999999999998764
No 475
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.70 E-value=0.092 Score=47.99 Aligned_cols=86 Identities=21% Similarity=0.326 Sum_probs=46.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-C---HHHHHHHHHHHhcCcccc-ccHHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-D---LRRIQDKIAELLKFKIEE-ENELQRRATLAKR 251 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~---~~~l~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 251 (385)
+..+++++|++|+||||++..+........ . .+..++.. . ...-+....+.++.+... .+...+...+ +.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~--~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l-~~ 148 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--K--TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL-TY 148 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--C--eEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHH-HH
Confidence 447999999999999999999987764321 1 45555554 1 112223333333333222 2333333333 33
Q ss_pred HHhcCCcEEEEEeCCC
Q 038663 252 LRERTKKVLIILDDVR 267 (385)
Q Consensus 252 l~~~~kr~LlVlDdv~ 267 (385)
+....+.=++++|..-
T Consensus 149 l~~~~~~D~ViIDt~G 164 (270)
T PRK06731 149 FKEEARVDYILIDTAG 164 (270)
T ss_pred HHhcCCCCEEEEECCC
Confidence 3321144677888764
No 476
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.09 Score=55.29 Aligned_cols=99 Identities=15% Similarity=0.291 Sum_probs=57.4
Q ss_pred cchHHHHHHHHHHhcc------C--CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHH
Q 038663 160 ESSSKALNSIMKLLKD------E--KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAEL 231 (385)
Q Consensus 160 ~gr~~~~~~l~~~L~~------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~ 231 (385)
+|.++.+..|.+.+.. + ......+.||.|+|||-||+.+....-.. .+ ..+-++.+...+ +...
T Consensus 565 ~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs--e~--~~IriDmse~~e----vskl 636 (898)
T KOG1051|consen 565 IGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS--EE--NFIRLDMSEFQE----VSKL 636 (898)
T ss_pred cchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC--cc--ceEEechhhhhh----hhhc
Confidence 4455555555555431 1 34567899999999999999999876432 33 333333333333 3323
Q ss_pred hcCccccccHHHHHHHHHHHHHhcCCcE-EEEEeCCCcc
Q 038663 232 LKFKIEEENELQRRATLAKRLRERTKKV-LIILDDVREK 269 (385)
Q Consensus 232 l~~~~~~~~~~~~~~~l~~~l~~~~kr~-LlVlDdv~~~ 269 (385)
++. .+..-..+....|.+.++. ++| +|+||||...
T Consensus 637 igs-p~gyvG~e~gg~Lteavrr--rP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 637 IGS-PPGYVGKEEGGQLTEAVKR--RPYSVVLFEEIEKA 672 (898)
T ss_pred cCC-CcccccchhHHHHHHHHhc--CCceEEEEechhhc
Confidence 232 2222222334577778887 665 5668999754
No 477
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.68 E-value=0.01 Score=50.65 Aligned_cols=122 Identities=20% Similarity=0.195 Sum_probs=61.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh---h---CCCCCceEEEEEcCCHHHHHHHHHHHhcCcc---c----cccH-H
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT---I---APYDKAHVIVAESSDLRRIQDKIAELLKFKI---E----EENE-L 242 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~---~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~---~----~~~~-~ 242 (385)
...+++|+|+.|+|||||.+.+..+... . ..|.+....|+ .. .+.+..++... . ..+. .
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q-----~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ-----LQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH-----HHHHHHcCCCccccCCCcCcCCHHH
Confidence 4468999999999999999998642110 0 01110011121 11 33455554321 1 1111 2
Q ss_pred HHHHHHHHHHHhcCC--cEEEEEeCCCcchh---hhhhcCCCCC-CCCCeEEEEeeCChhhhhhcCCceEEc
Q 038663 243 QRRATLAKRLRERTK--KVLIILDDVREKIN---LAVSGIPYGE-EGNRCKVIVTSRRLDVCSKMSDVTVQI 308 (385)
Q Consensus 243 ~~~~~l~~~l~~~~k--r~LlVlDdv~~~~~---~~~l~~~~~~-~~~gs~iivTtr~~~v~~~~~~~~~~l 308 (385)
...-.+.+.+-. + +=++++|+.-..-+ ...+...+.. ...|..||++|++...... .++++.|
T Consensus 93 ~qrl~laral~~--~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~-~d~i~~l 161 (176)
T cd03238 93 LQRVKLASELFS--EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS-ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHhh--CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-CCEEEEE
Confidence 223344555556 6 78999999754321 1111111111 1135668888888766432 2444444
No 478
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.67 E-value=0.051 Score=49.52 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=46.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccc---cccHHHHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIE---EENELQRRATLAKRLR 253 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~---~~~~~~~~~~l~~~l~ 253 (385)
++-+++.+|.+|+||.-+++.+.+..-....-. .....+...+..+.. +.-..++...++..++
T Consensus 109 KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S-------------~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~ 175 (344)
T KOG2170|consen 109 KPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS-------------PFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQ 175 (344)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHhccccc-------------hhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999999998754221111 001111111111110 0112345556666666
Q ss_pred hcCCcEEEEEeCCCcc
Q 038663 254 ERTKKVLIILDDVREK 269 (385)
Q Consensus 254 ~~~kr~LlVlDdv~~~ 269 (385)
.. +|-|+||||+...
T Consensus 176 ~C-~rslFIFDE~DKm 190 (344)
T KOG2170|consen 176 AC-QRSLFIFDEVDKL 190 (344)
T ss_pred hc-CCceEEechhhhc
Confidence 55 8999999999754
No 479
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.67 E-value=0.0096 Score=51.48 Aligned_cols=23 Identities=48% Similarity=0.638 Sum_probs=20.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHhh
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
|.|.|++|+||||+++.+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998753
No 480
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.66 E-value=0.42 Score=44.09 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=68.9
Q ss_pred HHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhC-----------CCCCceEEEEE-cCCHHHHHHHHHHHh
Q 038663 166 LNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIA-----------PYDKAHVIVAE-SSDLRRIQDKIAELL 232 (385)
Q Consensus 166 ~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----------~F~~~~~~wv~-vs~~~~l~~~i~~~l 232 (385)
-+.|...+..+.+ .-+.++|+.|+||+++|..+....--.. ..+ ...++. ....
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HP--D~~~i~p~~~~----------- 72 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHP--DIHEFSPQGKG----------- 72 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCC--CEEEEecCCCC-----------
Confidence 3566666666554 4667999999999999999887753211 011 111110 0000
Q ss_pred cCccccccHHHHHHHHHHHHHhc---CCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCC-hhhhhh-cC-Cc
Q 038663 233 KFKIEEENELQRRATLAKRLRER---TKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRR-LDVCSK-MS-DV 304 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~~---~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~-~~v~~~-~~-~~ 304 (385)
.....+ ....+.+.+.-. ++.=++|+|++... +.++.+...+.+...++.+|++|.+ ..+... .+ +.
T Consensus 73 ----~~I~id-qiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq 147 (290)
T PRK05917 73 ----RLHSIE-TPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSL 147 (290)
T ss_pred ----CcCcHH-HHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcce
Confidence 001111 123333433321 14557888998743 5566665555554556666555555 444433 33 66
Q ss_pred eEEcCCC
Q 038663 305 TVQIEEL 311 (385)
Q Consensus 305 ~~~l~~L 311 (385)
.+.+.++
T Consensus 148 ~~~~~~~ 154 (290)
T PRK05917 148 SIHIPME 154 (290)
T ss_pred EEEccch
Confidence 7777765
No 481
>PRK14531 adenylate kinase; Provisional
Probab=95.66 E-value=0.011 Score=50.74 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.|.|+|++|+||||+++.+.+...
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 482
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.66 E-value=0.045 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
+++.|+|+.|.|||++.+.+.-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999764
No 483
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=95.65 E-value=0.039 Score=53.55 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
..+.++.|..|.|||||++.+|-
T Consensus 30 GeIHaLLGENGAGKSTLm~iL~G 52 (501)
T COG3845 30 GEIHALLGENGAGKSTLMKILFG 52 (501)
T ss_pred CcEEEEeccCCCCHHHHHHHHhC
Confidence 45889999999999999999993
No 484
>PRK13948 shikimate kinase; Provisional
Probab=95.64 E-value=0.012 Score=50.51 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+.|.++|+.|+||||+++.+.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998865
No 485
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.62 E-value=0.16 Score=48.13 Aligned_cols=89 Identities=18% Similarity=0.167 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCC--CCceEEEEEcC---CHHHHHHHHHHHhcCccc----------cccH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPY--DKAHVIVAESS---DLRRIQDKIAELLKFKIE----------EENE 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~----------~~~~ 241 (385)
...++-|+|++|+|||+|+..++-........ ..+.++|++.. +..+ +.++++.++.... ..+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eR-l~qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQR-LIQIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHH-HHHHHHHcCCChhhhccceEEEecCCH
Confidence 35788999999999999999887543210001 11268888887 3333 4556666553221 0112
Q ss_pred HHH---HHHHHHHHHhcCCcEEEEEeCCC
Q 038663 242 LQR---RATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 242 ~~~---~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
+.. ...+...+... +--|||+|-+-
T Consensus 201 e~~~~ll~~~~~~~~~~-~~~LIVIDSI~ 228 (342)
T PLN03186 201 DHQSELLLEAASMMAET-RFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHhhcc-CCCEEEEeCcH
Confidence 222 22233334332 56689999875
No 486
>PRK13946 shikimate kinase; Provisional
Probab=95.61 E-value=0.011 Score=50.85 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+.|.++|++|+||||+++.+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999875
No 487
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.59 E-value=0.012 Score=50.87 Aligned_cols=25 Identities=40% Similarity=0.691 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998863
No 488
>PLN02165 adenylate isopentenyltransferase
Probab=95.59 E-value=0.01 Score=55.46 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=25.7
Q ss_pred ccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 174 KDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 174 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
......+++|+||.|+||||||..+.....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 445567999999999999999999998854
No 489
>PHA02774 E1; Provisional
Probab=95.58 E-value=0.033 Score=55.66 Aligned_cols=40 Identities=30% Similarity=0.397 Sum_probs=31.6
Q ss_pred HHHHHHHHHhccC-CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 164 KALNSIMKLLKDE-KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 164 ~~~~~l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+..|..+|.+. +-..+.|+||+|+|||.+|..+.+-+.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3556677777643 345899999999999999999999865
No 490
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.58 E-value=0.016 Score=48.50 Aligned_cols=27 Identities=37% Similarity=0.645 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
+++.|+|..|+|||||+..+...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999987643
No 491
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.57 E-value=0.089 Score=43.93 Aligned_cols=112 Identities=18% Similarity=0.164 Sum_probs=57.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEE---EEcC---CHHHHHHHHHHHh-----cCc--cccccH----
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIV---AESS---DLRRIQDKIAELL-----KFK--IEEENE---- 241 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~w---v~vs---~~~~l~~~i~~~l-----~~~--~~~~~~---- 241 (385)
..|-|++..|.||||+|--+.-+.-.. .+. +.+ +.-. .-..+++.+ ..+ +.. +...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~---v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~ 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH-GYR---VGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDI 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-CCe---EEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHH
Confidence 467888999999999999888765432 222 222 2211 222333322 001 000 000111
Q ss_pred ---HHHHHHHHHHHHhcCCcEEEEEeCCCcc-----hhhhhhcCCCCCCCCCeEEEEeeCChh
Q 038663 242 ---LQRRATLAKRLRERTKKVLIILDDVREK-----INLAVSGIPYGEEGNRCKVIVTSRRLD 296 (385)
Q Consensus 242 ---~~~~~~l~~~l~~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTtr~~~ 296 (385)
.......++.+... .-=|+|||++-.. ...+.+...+.....+.-+|+|.|+..
T Consensus 78 ~~a~~~~~~a~~~~~~~-~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 78 AAAAEGWAFAKEAIASG-EYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHhcC-CCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223344445441 4459999998543 122333333333445678999999965
No 492
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.56 E-value=0.012 Score=49.65 Aligned_cols=24 Identities=42% Similarity=0.764 Sum_probs=21.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+|.|.|+.|+||||+|+.+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 789999999999999999988754
No 493
>PLN02459 probable adenylate kinase
Probab=95.56 E-value=0.087 Score=47.69 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+.|.|++|+||||+++.+.+...
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~ 54 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG 54 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477889999999999999998764
No 494
>PRK05973 replicative DNA helicase; Provisional
Probab=95.55 E-value=0.044 Score=48.98 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=34.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIA 229 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~ 229 (385)
..++.|.|.+|+|||+|+.++....-.. . . .+++++.. +..++...+.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~-G-e--~vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKS-G-R--TGVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc-C-C--eEEEEEEeCCHHHHHHHHH
Confidence 4689999999999999999987765322 2 2 56666666 6666666653
No 495
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.55 E-value=0.012 Score=52.07 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...+++|+|+.|+|||||++.+.-..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 44699999999999999999998543
No 496
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.55 E-value=0.027 Score=53.75 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=61.8
Q ss_pred HHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHH-HHHHHHH---hcCccccccHHHH
Q 038663 169 IMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRI-QDKIAEL---LKFKIEEENELQR 244 (385)
Q Consensus 169 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l-~~~i~~~---l~~~~~~~~~~~~ 244 (385)
+.+.+.. ....|.|+|+.|+||||+++.+....... .....++ +.+.+..++ +..+... +............
T Consensus 126 ~~~~~~~-~~glilI~GpTGSGKTTtL~aLl~~i~~~--~~~~~~I-vt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~ 201 (358)
T TIGR02524 126 IIDAIAP-QEGIVFITGATGSGKSTLLAAIIRELAEA--PDSHRKI-LTYEAPIEFVYDEIETISASVCQSEIPRHLNNF 201 (358)
T ss_pred HHHHHhc-cCCEEEEECCCCCCHHHHHHHHHHHHhhc--CCCCcEE-EEeCCCceEeccccccccceeeeeeccccccCH
Confidence 4444443 35799999999999999999998876421 1100112 222211111 1111100 0000000111234
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhh
Q 038663 245 RATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDV 297 (385)
Q Consensus 245 ~~~l~~~l~~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v 297 (385)
...++..|+. .+-.+++.++.+.+.......+. ..|-.++-|-+..++
T Consensus 202 ~~~l~~aLR~--~Pd~i~vGEiRd~et~~~al~aa---~tGh~v~tTlHa~~~ 249 (358)
T TIGR02524 202 AAGVRNALRR--KPHAILVGEARDAETISAALEAA---LTGHPVYTTLHSSGV 249 (358)
T ss_pred HHHHHHHhcc--CCCEEeeeeeCCHHHHHHHHHHH---HcCCcEEEeeccCCH
Confidence 5667778887 88899999998776554322221 123335555555443
No 497
>PRK06761 hypothetical protein; Provisional
Probab=95.54 E-value=0.012 Score=54.00 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
++|.|.|++|+||||+++.+++....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 57999999999999999999998763
No 498
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.54 E-value=0.12 Score=51.51 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=33.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH-hhhhCCCCCceEEEEEcC-CHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ-IDTIAPYDKAHVIVAESS-DLRRIQDKI 228 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~F~~~~~~wv~vs-~~~~l~~~i 228 (385)
..+++.|.|++|+||||||.++..+ ..... . ..++++.. +..++.+.+
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g--e--~~lyvs~eE~~~~l~~~~ 69 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD--E--PGVFVTFEESPQDIIKNA 69 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--C--CEEEEEEecCHHHHHHHH
Confidence 4579999999999999999998654 33201 2 56677776 555555543
No 499
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.54 E-value=0.012 Score=50.78 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+...
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999854
No 500
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.54 E-value=0.012 Score=51.67 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+...
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999999864
Done!