Query 038663
Match_columns 385
No_of_seqs 229 out of 2077
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 23:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.7E-32 1.6E-36 272.1 23.4 192 160-361 131-344 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-28 6.6E-33 267.6 20.5 211 155-383 122-348 (1249)
3 1vt4_I APAF-1 related killer D 99.9 2.3E-27 7.8E-32 244.5 15.9 196 159-375 130-349 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 1.8E-26 6.3E-31 233.8 21.1 209 156-382 123-347 (591)
5 2qen_A Walker-type ATPase; unk 99.7 2.2E-15 7.7E-20 141.8 18.0 190 156-358 11-250 (350)
6 1w5s_A Origin recognition comp 99.6 1.9E-14 6.4E-19 138.8 17.6 197 157-355 22-267 (412)
7 2fna_A Conserved hypothetical 99.6 1.5E-14 5E-19 136.5 15.9 188 156-359 12-255 (357)
8 2qby_A CDC6 homolog 1, cell di 99.5 3.7E-13 1.3E-17 128.2 19.3 196 157-353 20-244 (386)
9 1njg_A DNA polymerase III subu 99.5 3.9E-13 1.3E-17 119.3 18.1 198 156-359 22-233 (250)
10 2v1u_A Cell division control p 99.5 9.2E-13 3.2E-17 125.6 20.0 219 157-381 19-277 (387)
11 2qby_B CDC6 homolog 3, cell di 99.5 4.4E-12 1.5E-16 120.9 22.1 215 157-381 20-271 (384)
12 2chg_A Replication factor C sm 99.4 3.6E-12 1.2E-16 111.5 16.9 178 156-355 16-205 (226)
13 1fnn_A CDC6P, cell division co 99.4 9.4E-12 3.2E-16 118.8 19.8 195 157-354 17-247 (389)
14 3qfl_A MLA10; coiled-coil, (CC 99.4 5.4E-13 1.9E-17 104.5 8.1 80 10-100 2-82 (115)
15 1sxj_B Activator 1 37 kDa subu 99.3 2.1E-11 7.3E-16 113.2 13.8 184 156-356 20-212 (323)
16 1iqp_A RFCS; clamp loader, ext 99.2 1.9E-10 6.5E-15 107.0 14.9 185 155-358 23-216 (327)
17 3te6_A Regulatory protein SIR3 99.2 4.3E-10 1.5E-14 103.7 15.0 198 159-357 22-283 (318)
18 2chq_A Replication factor C sm 99.1 1.4E-09 4.7E-14 100.7 16.6 183 156-355 16-205 (319)
19 1jr3_A DNA polymerase III subu 99.1 2.3E-09 7.8E-14 101.6 15.7 194 156-355 15-222 (373)
20 3bos_A Putative DNA replicatio 99.0 3.3E-10 1.1E-14 100.4 8.0 172 156-354 27-217 (242)
21 1hqc_A RUVB; extended AAA-ATPa 99.0 3.7E-09 1.3E-13 98.2 13.8 176 155-358 10-215 (324)
22 3h4m_A Proteasome-activating n 99.0 6E-08 2.1E-12 88.3 20.8 201 153-382 13-260 (285)
23 1jbk_A CLPB protein; beta barr 99.0 2.6E-09 9E-14 90.8 10.8 154 156-320 21-194 (195)
24 1d2n_A N-ethylmaleimide-sensit 99.0 6.2E-08 2.1E-12 87.8 20.2 193 159-383 35-264 (272)
25 2qz4_A Paraplegin; AAA+, SPG7, 98.9 1E-07 3.4E-12 85.6 20.4 208 155-382 4-251 (262)
26 3eie_A Vacuolar protein sortin 98.9 1.8E-07 6.1E-12 86.9 20.9 182 152-353 13-227 (322)
27 1xwi_A SKD1 protein; VPS4B, AA 98.9 2.4E-07 8.4E-12 86.0 21.1 181 154-353 9-222 (322)
28 3pvs_A Replication-associated 98.9 2.9E-08 1E-12 96.3 14.9 176 154-356 23-217 (447)
29 3pfi_A Holliday junction ATP-d 98.9 2.8E-08 9.5E-13 92.9 14.3 173 155-355 27-228 (338)
30 1sxj_D Activator 1 41 kDa subu 98.9 3.5E-08 1.2E-12 92.7 14.9 191 155-354 35-235 (353)
31 3d8b_A Fidgetin-like protein 1 98.9 2.5E-07 8.7E-12 87.2 20.8 180 155-354 82-295 (357)
32 3syl_A Protein CBBX; photosynt 98.9 1.9E-08 6.5E-13 92.8 12.4 151 159-325 33-218 (309)
33 3uk6_A RUVB-like 2; hexameric 98.8 6.1E-08 2.1E-12 91.7 15.8 214 156-379 43-329 (368)
34 1sxj_E Activator 1 40 kDa subu 98.8 3.7E-08 1.3E-12 92.6 14.1 193 156-355 13-238 (354)
35 1sxj_A Activator 1 95 kDa subu 98.8 1.4E-08 4.6E-13 100.7 10.7 186 155-355 37-254 (516)
36 2z4s_A Chromosomal replication 98.8 2.4E-08 8.2E-13 96.9 11.6 201 156-380 104-332 (440)
37 2qp9_X Vacuolar protein sortin 98.8 3.5E-07 1.2E-11 86.2 19.0 179 155-353 49-260 (355)
38 3vfd_A Spastin; ATPase, microt 98.8 6.4E-07 2.2E-11 85.5 20.9 182 153-354 111-326 (389)
39 3b9p_A CG5977-PA, isoform A; A 98.8 1E-06 3.6E-11 80.6 21.1 181 154-354 18-233 (297)
40 2zan_A Vacuolar protein sortin 98.7 5.8E-07 2E-11 87.2 19.6 175 154-347 131-337 (444)
41 3u61_B DNA polymerase accessor 98.7 1.4E-07 4.8E-12 87.6 13.7 178 154-357 23-219 (324)
42 1sxj_C Activator 1 40 kDa subu 98.7 3E-07 1E-11 86.1 14.3 180 155-353 23-211 (340)
43 1a5t_A Delta prime, HOLB; zinc 98.6 1.2E-06 4.3E-11 81.6 17.1 168 162-352 7-203 (334)
44 1l8q_A Chromosomal replication 98.6 5E-07 1.7E-11 83.9 14.3 165 165-349 22-203 (324)
45 3pxg_A Negative regulator of g 98.5 2.1E-06 7.1E-11 83.9 17.0 152 154-325 177-339 (468)
46 2p65_A Hypothetical protein PF 98.5 4.1E-07 1.4E-11 76.7 10.4 48 156-203 21-68 (187)
47 3cf0_A Transitional endoplasmi 98.5 4.4E-06 1.5E-10 76.7 17.5 171 155-349 13-223 (301)
48 4b4t_J 26S protease regulatory 98.5 3.6E-06 1.2E-10 79.6 17.0 202 152-381 143-390 (405)
49 1qvr_A CLPB protein; coiled co 98.5 4.1E-07 1.4E-11 95.5 11.5 180 154-344 167-369 (854)
50 4b4t_I 26S protease regulatory 98.4 1.1E-05 3.6E-10 76.8 17.9 203 151-381 176-424 (437)
51 3hu3_A Transitional endoplasmi 98.4 1.2E-05 4E-10 78.8 18.3 174 156-353 203-414 (489)
52 4b4t_M 26S protease regulatory 98.4 9.8E-06 3.4E-10 77.7 16.4 172 152-347 176-387 (434)
53 4b4t_L 26S protease subunit RP 98.4 1E-05 3.6E-10 77.6 16.4 202 152-381 176-423 (437)
54 3pxi_A Negative regulator of g 98.4 3.2E-06 1.1E-10 87.7 13.5 152 154-325 177-339 (758)
55 4b4t_H 26S protease regulatory 98.4 1.6E-05 5.3E-10 76.4 17.1 202 152-382 204-452 (467)
56 1in4_A RUVB, holliday junction 98.3 5.8E-06 2E-10 77.1 13.8 171 155-353 23-222 (334)
57 1lv7_A FTSH; alpha/beta domain 98.3 7.8E-05 2.7E-09 66.5 20.5 203 155-384 10-256 (257)
58 4b4t_K 26S protease regulatory 98.3 1.2E-05 4E-10 77.0 15.5 172 152-347 167-379 (428)
59 1r6b_X CLPA protein; AAA+, N-t 98.3 1.6E-05 5.4E-10 82.5 17.4 155 155-324 184-362 (758)
60 1ofh_A ATP-dependent HSL prote 98.2 1.1E-05 3.8E-10 73.9 12.8 45 159-203 17-75 (310)
61 2c9o_A RUVB-like 1; hexameric 98.2 9.8E-06 3.3E-10 78.9 12.9 95 260-354 298-410 (456)
62 3ec2_A DNA replication protein 98.2 2.1E-06 7.3E-11 72.4 7.0 117 162-295 19-143 (180)
63 2ce7_A Cell division protein F 98.2 2.9E-05 9.8E-10 75.6 15.0 170 156-347 15-221 (476)
64 4fcw_A Chaperone protein CLPB; 98.1 6.6E-06 2.3E-10 75.6 9.0 157 159-324 19-229 (311)
65 3cf2_A TER ATPase, transitiona 98.1 2.3E-05 8E-10 80.6 13.7 149 177-349 237-409 (806)
66 2gno_A DNA polymerase III, gam 98.1 1.2E-05 4.2E-10 73.8 10.6 142 163-324 3-152 (305)
67 2r62_A Cell division protease 98.1 2.8E-06 9.5E-11 76.5 5.3 169 156-348 10-219 (268)
68 3n70_A Transport activator; si 98.0 4.4E-06 1.5E-10 67.9 5.3 46 158-203 2-49 (145)
69 2bjv_A PSP operon transcriptio 98.0 3.4E-06 1.2E-10 75.9 4.8 47 157-203 6-54 (265)
70 1ojl_A Transcriptional regulat 97.9 3.9E-05 1.3E-09 70.4 9.8 46 158-203 3-50 (304)
71 2w58_A DNAI, primosome compone 97.8 6.9E-05 2.4E-09 64.1 9.0 116 162-295 34-159 (202)
72 3m6a_A ATP-dependent protease 97.8 0.00015 5E-09 72.1 11.8 150 159-324 83-266 (543)
73 3pxi_A Negative regulator of g 97.8 0.00014 4.8E-09 75.3 12.1 146 158-324 492-675 (758)
74 3t15_A Ribulose bisphosphate c 97.7 0.00022 7.5E-09 65.0 11.5 27 177-203 35-61 (293)
75 1iy2_A ATP-dependent metallopr 97.7 0.0014 4.9E-08 58.9 16.4 172 154-347 37-245 (278)
76 1ixz_A ATP-dependent metallopr 97.7 0.0015 5.2E-08 57.8 16.0 144 180-347 51-221 (254)
77 1r6b_X CLPA protein; AAA+, N-t 97.7 8.5E-05 2.9E-09 77.0 8.8 157 158-324 459-666 (758)
78 1ypw_A Transitional endoplasmi 97.7 0.00075 2.6E-08 70.2 15.6 149 156-325 203-386 (806)
79 1um8_A ATP-dependent CLP prote 97.6 0.00032 1.1E-08 66.3 10.5 26 178-203 72-97 (376)
80 2x8a_A Nuclear valosin-contain 97.6 0.0029 1E-07 56.9 16.3 149 156-325 9-192 (274)
81 2dhr_A FTSH; AAA+ protein, hex 97.6 0.0015 5.3E-08 63.7 15.5 170 154-347 28-236 (499)
82 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00043 1.5E-08 60.2 9.8 113 178-295 23-168 (235)
83 1qvr_A CLPB protein; coiled co 97.4 0.00011 3.7E-09 77.1 5.6 46 158-203 559-613 (854)
84 2ehv_A Hypothetical protein PH 97.4 0.00035 1.2E-08 61.6 8.0 25 177-201 29-53 (251)
85 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00031 1.1E-08 64.3 7.2 70 178-269 123-194 (331)
86 3ice_A Transcription terminati 97.3 0.0013 4.6E-08 61.5 10.2 99 168-269 163-273 (422)
87 3hr8_A Protein RECA; alpha and 97.2 0.0085 2.9E-07 55.8 15.4 84 177-268 60-150 (356)
88 1jr3_D DNA polymerase III, del 97.2 0.0047 1.6E-07 57.3 13.7 159 171-353 11-184 (343)
89 1u0j_A DNA replication protein 97.2 0.0022 7.4E-08 57.2 10.1 38 165-202 89-128 (267)
90 1n0w_A DNA repair protein RAD5 97.2 0.0033 1.1E-07 54.9 11.3 89 177-268 23-130 (243)
91 2qgz_A Helicase loader, putati 97.1 0.0014 4.8E-08 60.1 8.9 42 162-203 133-177 (308)
92 2cvh_A DNA repair and recombin 97.1 0.0026 8.9E-08 54.7 9.8 36 177-219 19-54 (220)
93 3c8u_A Fructokinase; YP_612366 97.1 0.00072 2.5E-08 58.1 6.1 41 164-204 6-48 (208)
94 1sky_E F1-ATPase, F1-ATP synth 97.0 0.0041 1.4E-07 59.8 11.4 87 179-268 152-256 (473)
95 3cf2_A TER ATPase, transitiona 97.0 0.0013 4.5E-08 67.7 8.3 168 156-347 476-683 (806)
96 2b8t_A Thymidine kinase; deoxy 97.0 0.00017 5.8E-09 62.8 1.5 109 177-294 11-125 (223)
97 1rz3_A Hypothetical protein rb 97.0 0.00088 3E-08 57.3 5.8 43 162-204 3-48 (201)
98 2orw_A Thymidine kinase; TMTK, 97.0 4.6E-05 1.6E-09 64.5 -2.6 25 179-203 4-28 (184)
99 3co5_A Putative two-component 96.9 0.00028 9.4E-09 56.9 1.6 45 158-202 5-51 (143)
100 1v5w_A DMC1, meiotic recombina 96.8 0.0091 3.1E-07 55.5 11.6 91 177-268 121-230 (343)
101 1g8p_A Magnesium-chelatase 38 96.8 0.00069 2.4E-08 63.0 3.9 49 155-203 22-70 (350)
102 3bh0_A DNAB-like replicative h 96.8 0.011 3.9E-07 54.1 12.0 61 165-231 57-118 (315)
103 3e70_C DPA, signal recognition 96.8 0.02 6.7E-07 52.8 13.4 29 176-204 127-155 (328)
104 4a74_A DNA repair and recombin 96.8 0.011 3.8E-07 51.0 11.2 91 177-268 24-136 (231)
105 2z43_A DNA repair and recombin 96.8 0.0058 2E-07 56.3 9.7 91 177-268 106-214 (324)
106 2dr3_A UPF0273 protein PH0284; 96.7 0.0078 2.7E-07 52.6 10.1 46 178-227 23-69 (247)
107 1vma_A Cell division protein F 96.7 0.011 3.8E-07 53.9 11.2 85 177-267 103-196 (306)
108 3kb2_A SPBC2 prophage-derived 96.7 0.00095 3.3E-08 55.1 3.7 25 179-203 2-26 (173)
109 1qhx_A CPT, protein (chloramph 96.7 0.00097 3.3E-08 55.5 3.6 25 179-203 4-28 (178)
110 3lw7_A Adenylate kinase relate 96.7 0.00098 3.3E-08 55.0 3.6 22 179-201 2-23 (179)
111 3umf_A Adenylate kinase; rossm 96.7 0.0039 1.3E-07 53.9 7.4 27 177-203 28-54 (217)
112 1kgd_A CASK, peripheral plasma 96.7 0.0012 4E-08 55.4 4.0 26 178-203 5-30 (180)
113 3vaa_A Shikimate kinase, SK; s 96.7 0.0012 4.2E-08 56.2 4.1 27 177-203 24-50 (199)
114 2zr9_A Protein RECA, recombina 96.7 0.007 2.4E-07 56.4 9.5 84 177-268 60-150 (349)
115 1j8m_F SRP54, signal recogniti 96.7 0.022 7.6E-07 51.7 12.6 83 178-266 98-189 (297)
116 3uie_A Adenylyl-sulfate kinase 96.7 0.0013 4.5E-08 56.0 4.2 29 175-203 22-50 (200)
117 1kag_A SKI, shikimate kinase I 96.6 0.0011 3.8E-08 54.9 3.4 25 179-203 5-29 (173)
118 2xxa_A Signal recognition part 96.6 0.032 1.1E-06 53.4 13.9 29 177-205 99-127 (433)
119 4eun_A Thermoresistant glucoki 96.6 0.0014 4.9E-08 55.8 4.1 27 176-202 27-53 (200)
120 1zp6_A Hypothetical protein AT 96.6 0.0012 4.2E-08 55.6 3.6 25 177-201 8-32 (191)
121 3jvv_A Twitching mobility prot 96.6 0.00034 1.2E-08 65.5 0.0 114 177-299 122-235 (356)
122 2r44_A Uncharacterized protein 96.6 0.0016 5.3E-08 60.2 4.5 44 158-203 28-71 (331)
123 3io5_A Recombination and repai 96.6 0.01 3.5E-07 54.1 9.7 83 180-269 30-123 (333)
124 1xp8_A RECA protein, recombina 96.6 0.0088 3E-07 56.1 9.6 83 177-267 73-162 (366)
125 1u94_A RECA protein, recombina 96.6 0.011 3.6E-07 55.3 10.0 83 177-267 62-151 (356)
126 3l0o_A Transcription terminati 96.6 0.0042 1.5E-07 58.1 7.1 99 167-269 163-274 (427)
127 3trf_A Shikimate kinase, SK; a 96.5 0.0016 5.5E-08 54.6 3.9 26 178-203 5-30 (185)
128 1ly1_A Polynucleotide kinase; 96.5 0.0016 5.4E-08 54.1 3.8 22 179-200 3-24 (181)
129 2ck3_D ATP synthase subunit be 96.5 0.021 7E-07 55.0 11.8 97 169-268 143-264 (482)
130 2kjq_A DNAA-related protein; s 96.5 0.0023 7.8E-08 51.9 4.5 28 177-204 35-62 (149)
131 3tr0_A Guanylate kinase, GMP k 96.5 0.0016 5.5E-08 55.4 3.8 25 178-202 7-31 (205)
132 3lda_A DNA repair protein RAD5 96.5 0.013 4.4E-07 55.6 10.3 89 177-268 177-284 (400)
133 3dm5_A SRP54, signal recogniti 96.5 0.032 1.1E-06 53.4 13.0 28 177-204 99-126 (443)
134 3hws_A ATP-dependent CLP prote 96.5 0.0028 9.7E-08 59.4 5.7 45 159-203 17-76 (363)
135 2yvu_A Probable adenylyl-sulfa 96.5 0.0022 7.5E-08 53.8 4.4 29 176-204 11-39 (186)
136 1nks_A Adenylate kinase; therm 96.5 0.0017 5.9E-08 54.5 3.8 26 179-204 2-27 (194)
137 3tau_A Guanylate kinase, GMP k 96.5 0.0018 6.3E-08 55.6 4.0 27 177-203 7-33 (208)
138 2i1q_A DNA repair and recombin 96.5 0.013 4.5E-07 53.8 10.0 91 177-268 97-215 (322)
139 1ye8_A Protein THEP1, hypothet 96.5 0.002 6.8E-08 54.0 4.0 24 180-203 2-25 (178)
140 3t61_A Gluconokinase; PSI-biol 96.5 0.0015 5.3E-08 55.6 3.4 26 178-203 18-43 (202)
141 3a00_A Guanylate kinase, GMP k 96.5 0.0015 5.2E-08 55.0 3.3 25 179-203 2-26 (186)
142 1kht_A Adenylate kinase; phosp 96.4 0.002 6.8E-08 54.1 3.9 25 179-203 4-28 (192)
143 4a1f_A DNAB helicase, replicat 96.4 0.029 1E-06 51.8 12.0 61 165-231 35-96 (338)
144 1fx0_B ATP synthase beta chain 96.4 0.011 3.7E-07 57.1 9.2 95 170-267 156-276 (498)
145 2ffh_A Protein (FFH); SRP54, s 96.4 0.022 7.7E-07 54.3 11.4 28 177-204 97-124 (425)
146 1knq_A Gluconate kinase; ALFA/ 96.4 0.0023 8E-08 53.0 4.1 25 178-202 8-32 (175)
147 2qor_A Guanylate kinase; phosp 96.4 0.0017 5.9E-08 55.5 3.4 27 177-203 11-37 (204)
148 2rhm_A Putative kinase; P-loop 96.4 0.0021 7.3E-08 54.1 3.9 26 178-203 5-30 (193)
149 2px0_A Flagellar biosynthesis 96.4 0.012 4E-07 53.5 9.1 28 177-204 104-131 (296)
150 1odf_A YGR205W, hypothetical 3 96.4 0.0037 1.3E-07 56.7 5.7 29 176-204 29-57 (290)
151 3iij_A Coilin-interacting nucl 96.4 0.002 6.8E-08 53.8 3.6 26 178-203 11-36 (180)
152 1lvg_A Guanylate kinase, GMP k 96.4 0.0019 6.4E-08 55.1 3.4 25 178-202 4-28 (198)
153 1ypw_A Transitional endoplasmi 96.4 0.00096 3.3E-08 69.4 1.8 150 156-325 476-662 (806)
154 1via_A Shikimate kinase; struc 96.4 0.002 6.9E-08 53.5 3.5 25 179-203 5-29 (175)
155 2ze6_A Isopentenyl transferase 96.4 0.0023 7.7E-08 56.9 4.0 25 179-203 2-26 (253)
156 3asz_A Uridine kinase; cytidin 96.4 0.0024 8.3E-08 54.7 4.0 27 177-203 5-31 (211)
157 4gp7_A Metallophosphoesterase; 96.3 0.0019 6.7E-08 53.6 3.2 22 177-198 8-29 (171)
158 2jaq_A Deoxyguanosine kinase; 96.3 0.0024 8.2E-08 54.2 3.8 24 180-203 2-25 (205)
159 2j41_A Guanylate kinase; GMP, 96.3 0.0024 8.1E-08 54.4 3.8 25 178-202 6-30 (207)
160 2hf9_A Probable hydrogenase ni 96.3 0.0041 1.4E-07 53.8 5.3 39 165-203 25-63 (226)
161 2bdt_A BH3686; alpha-beta prot 96.3 0.0024 8.1E-08 53.8 3.6 22 179-200 3-24 (189)
162 3ney_A 55 kDa erythrocyte memb 96.3 0.0027 9.2E-08 54.0 3.9 27 177-203 18-44 (197)
163 1zuh_A Shikimate kinase; alpha 96.3 0.0028 9.5E-08 52.2 3.9 27 177-203 6-32 (168)
164 1ex7_A Guanylate kinase; subst 96.3 0.0022 7.6E-08 54.1 3.3 25 179-203 2-26 (186)
165 1pzn_A RAD51, DNA repair and r 96.3 0.02 6.7E-07 53.4 10.1 92 177-269 130-243 (349)
166 3kl4_A SRP54, signal recogniti 96.3 0.031 1E-06 53.5 11.6 28 177-204 96-123 (433)
167 2bbw_A Adenylate kinase 4, AK4 96.3 0.0028 9.6E-08 55.9 4.1 26 178-203 27-52 (246)
168 1cke_A CK, MSSA, protein (cyti 96.3 0.0026 9E-08 55.1 3.8 25 179-203 6-30 (227)
169 1tev_A UMP-CMP kinase; ploop, 96.3 0.003 1E-07 53.1 4.0 26 178-203 3-28 (196)
170 1znw_A Guanylate kinase, GMP k 96.3 0.0025 8.6E-08 54.6 3.6 26 177-202 19-44 (207)
171 2plr_A DTMP kinase, probable t 96.3 0.0032 1.1E-07 53.7 4.2 27 178-204 4-30 (213)
172 2zts_A Putative uncharacterize 96.2 0.021 7.2E-07 49.8 9.7 48 178-228 30-78 (251)
173 3cm0_A Adenylate kinase; ATP-b 96.2 0.0033 1.1E-07 52.6 4.1 26 178-203 4-29 (186)
174 2c95_A Adenylate kinase 1; tra 96.2 0.0029 1E-07 53.3 3.8 27 177-203 8-34 (196)
175 3nbx_X ATPase RAVA; AAA+ ATPas 96.2 0.002 7E-08 62.9 3.1 43 159-203 24-66 (500)
176 2wsm_A Hydrogenase expression/ 96.2 0.0037 1.3E-07 53.8 4.5 43 161-203 13-55 (221)
177 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0064 2.2E-07 56.4 6.2 41 163-203 5-49 (359)
178 2iyv_A Shikimate kinase, SK; t 96.2 0.0026 8.8E-08 53.2 3.3 25 179-203 3-27 (184)
179 1xjc_A MOBB protein homolog; s 96.2 0.0039 1.3E-07 51.7 4.2 28 177-204 3-30 (169)
180 1ukz_A Uridylate kinase; trans 96.2 0.0034 1.2E-07 53.4 4.0 27 177-203 14-40 (203)
181 1gvn_B Zeta; postsegregational 96.2 0.0059 2E-07 55.3 5.7 26 177-202 32-57 (287)
182 1e6c_A Shikimate kinase; phosp 96.2 0.003 1E-07 52.1 3.5 25 179-203 3-27 (173)
183 2bwj_A Adenylate kinase 5; pho 96.2 0.0032 1.1E-07 53.2 3.7 26 178-203 12-37 (199)
184 1z6g_A Guanylate kinase; struc 96.2 0.0026 8.8E-08 55.1 3.2 26 177-202 22-47 (218)
185 1y63_A LMAJ004144AAA protein; 96.2 0.0035 1.2E-07 52.6 3.9 25 177-201 9-33 (184)
186 2q6t_A DNAB replication FORK h 96.2 0.046 1.6E-06 52.6 12.3 61 165-230 189-250 (444)
187 1htw_A HI0065; nucleotide-bind 96.2 0.0035 1.2E-07 51.4 3.7 27 176-202 31-57 (158)
188 3bgw_A DNAB-like replicative h 96.1 0.039 1.3E-06 53.1 11.6 60 165-230 186-246 (444)
189 2vli_A Antibiotic resistance p 96.1 0.0024 8.3E-08 53.2 2.8 26 178-203 5-30 (183)
190 1uf9_A TT1252 protein; P-loop, 96.1 0.0036 1.2E-07 53.1 3.8 26 176-201 6-31 (203)
191 2cdn_A Adenylate kinase; phosp 96.1 0.0043 1.5E-07 52.7 4.3 27 177-203 19-45 (201)
192 4e22_A Cytidylate kinase; P-lo 96.1 0.004 1.4E-07 55.2 4.1 27 177-203 26-52 (252)
193 1s96_A Guanylate kinase, GMP k 96.1 0.0035 1.2E-07 54.4 3.6 27 177-203 15-41 (219)
194 3aez_A Pantothenate kinase; tr 96.1 0.0042 1.4E-07 56.9 4.4 29 176-204 88-116 (312)
195 1ls1_A Signal recognition part 96.1 0.05 1.7E-06 49.3 11.4 84 177-266 97-189 (295)
196 2if2_A Dephospho-COA kinase; a 96.1 0.0033 1.1E-07 53.5 3.4 22 179-200 2-23 (204)
197 3vr4_D V-type sodium ATPase su 96.1 0.012 4.3E-07 56.1 7.5 100 169-268 141-259 (465)
198 2r6a_A DNAB helicase, replicat 96.0 0.047 1.6E-06 52.7 11.8 60 165-229 192-252 (454)
199 1aky_A Adenylate kinase; ATP:A 96.0 0.0043 1.5E-07 53.6 4.0 26 178-203 4-29 (220)
200 1qf9_A UMP/CMP kinase, protein 96.0 0.0039 1.3E-07 52.3 3.7 26 178-203 6-31 (194)
201 1tue_A Replication protein E1; 96.0 0.0073 2.5E-07 51.4 5.2 40 164-203 43-83 (212)
202 1rj9_A FTSY, signal recognitio 96.0 0.0045 1.5E-07 56.5 4.2 28 177-204 101-128 (304)
203 2wwf_A Thymidilate kinase, put 96.0 0.0042 1.4E-07 53.1 3.9 31 178-209 10-40 (212)
204 2jeo_A Uridine-cytidine kinase 96.0 0.0049 1.7E-07 54.3 4.3 26 177-202 24-49 (245)
205 2pt5_A Shikimate kinase, SK; a 96.0 0.0047 1.6E-07 50.7 3.9 24 180-203 2-25 (168)
206 1nn5_A Similar to deoxythymidy 96.0 0.0045 1.5E-07 53.0 3.8 27 178-204 9-35 (215)
207 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0047 1.6E-07 55.0 4.1 26 178-203 4-29 (260)
208 2pbr_A DTMP kinase, thymidylat 96.0 0.0046 1.6E-07 51.9 3.8 24 180-203 2-25 (195)
209 2qt1_A Nicotinamide riboside k 96.0 0.0043 1.5E-07 53.0 3.6 26 177-202 20-45 (207)
210 2c61_A A-type ATP synthase non 96.0 0.018 6.1E-07 55.3 8.1 99 169-267 142-259 (469)
211 3tqc_A Pantothenate kinase; bi 96.0 0.0079 2.7E-07 55.2 5.5 27 177-203 91-117 (321)
212 2i3b_A HCR-ntpase, human cance 95.9 0.0044 1.5E-07 52.4 3.5 25 179-203 2-26 (189)
213 1jjv_A Dephospho-COA kinase; P 95.9 0.0044 1.5E-07 52.8 3.5 22 179-200 3-24 (206)
214 3tif_A Uncharacterized ABC tra 95.9 0.0045 1.5E-07 54.3 3.5 24 177-200 30-53 (235)
215 1zak_A Adenylate kinase; ATP:A 95.9 0.0044 1.5E-07 53.6 3.4 26 178-203 5-30 (222)
216 2p5t_B PEZT; postsegregational 95.9 0.0069 2.4E-07 53.7 4.8 27 177-203 31-57 (253)
217 1zd8_A GTP:AMP phosphotransfer 95.9 0.0043 1.5E-07 53.9 3.4 26 178-203 7-32 (227)
218 3tlx_A Adenylate kinase 2; str 95.9 0.011 3.9E-07 51.9 6.1 28 176-203 27-54 (243)
219 2onk_A Molybdate/tungstate ABC 95.9 0.0047 1.6E-07 54.3 3.6 25 176-201 23-47 (240)
220 1gtv_A TMK, thymidylate kinase 95.9 0.0024 8.3E-08 54.7 1.7 25 179-203 1-25 (214)
221 3fb4_A Adenylate kinase; psych 95.9 0.0053 1.8E-07 52.7 3.8 24 180-203 2-25 (216)
222 3cmu_A Protein RECA, recombina 95.9 0.018 6.3E-07 64.6 8.7 83 177-267 1426-1515(2050)
223 1uj2_A Uridine-cytidine kinase 95.8 0.006 2.1E-07 54.0 4.1 28 176-203 20-47 (252)
224 1m7g_A Adenylylsulfate kinase; 95.8 0.0067 2.3E-07 52.0 4.2 28 176-203 23-50 (211)
225 3b9q_A Chloroplast SRP recepto 95.8 0.0065 2.2E-07 55.4 4.3 28 177-204 99-126 (302)
226 2z0h_A DTMP kinase, thymidylat 95.8 0.006 2.1E-07 51.4 3.8 25 180-204 2-26 (197)
227 3lnc_A Guanylate kinase, GMP k 95.8 0.0036 1.2E-07 54.6 2.4 25 178-202 27-52 (231)
228 2v54_A DTMP kinase, thymidylat 95.8 0.0056 1.9E-07 52.0 3.5 25 178-202 4-28 (204)
229 2j37_W Signal recognition part 95.8 0.11 3.9E-06 50.6 13.1 28 177-204 100-127 (504)
230 2pez_A Bifunctional 3'-phospho 95.8 0.0074 2.5E-07 50.2 4.2 28 177-204 4-31 (179)
231 3b85_A Phosphate starvation-in 95.8 0.0046 1.6E-07 53.2 2.9 24 178-201 22-45 (208)
232 2pcj_A ABC transporter, lipopr 95.8 0.0045 1.5E-07 53.9 2.9 25 177-201 29-53 (224)
233 3dl0_A Adenylate kinase; phosp 95.7 0.0059 2E-07 52.5 3.5 24 180-203 2-25 (216)
234 1g41_A Heat shock protein HSLU 95.7 0.0076 2.6E-07 57.8 4.6 45 159-203 17-75 (444)
235 3sr0_A Adenylate kinase; phosp 95.7 0.0064 2.2E-07 52.1 3.7 24 180-203 2-25 (206)
236 3mfy_A V-type ATP synthase alp 95.7 0.022 7.4E-07 55.7 7.7 93 169-267 217-334 (588)
237 2f1r_A Molybdopterin-guanine d 95.7 0.0037 1.3E-07 51.9 2.1 26 179-204 3-28 (171)
238 3r20_A Cytidylate kinase; stru 95.7 0.007 2.4E-07 52.9 3.9 26 178-203 9-34 (233)
239 1np6_A Molybdopterin-guanine d 95.7 0.0077 2.6E-07 50.1 4.0 27 178-204 6-32 (174)
240 1b0u_A Histidine permease; ABC 95.7 0.0063 2.1E-07 54.3 3.6 25 177-201 31-55 (262)
241 2cbz_A Multidrug resistance-as 95.7 0.0063 2.2E-07 53.4 3.5 26 177-202 30-55 (237)
242 2ck3_A ATP synthase subunit al 95.7 0.029 9.8E-07 54.4 8.3 99 169-268 152-273 (510)
243 3vr4_A V-type sodium ATPase ca 95.6 0.043 1.5E-06 53.8 9.4 93 169-267 222-339 (600)
244 3nwj_A ATSK2; P loop, shikimat 95.6 0.0069 2.4E-07 53.6 3.6 26 178-203 48-73 (250)
245 1sq5_A Pantothenate kinase; P- 95.6 0.015 5.1E-07 53.1 6.0 28 176-203 78-105 (308)
246 3gfo_A Cobalt import ATP-bindi 95.6 0.0061 2.1E-07 54.7 3.2 24 177-200 33-56 (275)
247 2olj_A Amino acid ABC transpor 95.6 0.0063 2.2E-07 54.3 3.2 25 177-201 49-73 (263)
248 2zu0_C Probable ATP-dependent 95.6 0.0075 2.6E-07 53.9 3.8 25 177-201 45-69 (267)
249 2grj_A Dephospho-COA kinase; T 95.6 0.0079 2.7E-07 51.0 3.7 27 176-202 10-36 (192)
250 2d2e_A SUFC protein; ABC-ATPas 95.6 0.0072 2.4E-07 53.5 3.6 25 177-201 28-52 (250)
251 1mv5_A LMRA, multidrug resista 95.6 0.0068 2.3E-07 53.4 3.3 25 177-201 27-51 (243)
252 2og2_A Putative signal recogni 95.6 0.0093 3.2E-07 55.7 4.4 28 177-204 156-183 (359)
253 2eyu_A Twitching motility prot 95.6 0.013 4.5E-07 52.2 5.2 113 176-297 23-135 (261)
254 3d3q_A TRNA delta(2)-isopenten 95.6 0.008 2.7E-07 55.5 3.8 25 179-203 8-32 (340)
255 2pze_A Cystic fibrosis transme 95.6 0.0064 2.2E-07 53.0 3.1 26 177-202 33-58 (229)
256 1q57_A DNA primase/helicase; d 95.6 0.065 2.2E-06 52.4 10.7 50 178-230 242-292 (503)
257 1ji0_A ABC transporter; ATP bi 95.6 0.0063 2.2E-07 53.5 3.0 25 177-201 31-55 (240)
258 1sgw_A Putative ABC transporte 95.5 0.0057 2E-07 52.8 2.7 25 177-201 34-58 (214)
259 3ake_A Cytidylate kinase; CMP 95.5 0.0087 3E-07 50.9 3.8 24 180-203 4-27 (208)
260 3k1j_A LON protease, ATP-depen 95.5 0.011 3.7E-07 59.4 5.1 46 156-203 40-85 (604)
261 1g6h_A High-affinity branched- 95.5 0.0064 2.2E-07 54.1 3.0 25 177-201 32-56 (257)
262 3gmt_A Adenylate kinase; ssgci 95.5 0.056 1.9E-06 46.9 8.9 25 179-203 9-33 (230)
263 4g1u_C Hemin import ATP-bindin 95.5 0.0074 2.5E-07 53.9 3.4 24 177-200 36-59 (266)
264 1vpl_A ABC transporter, ATP-bi 95.5 0.0071 2.4E-07 53.7 3.2 25 177-201 40-64 (256)
265 1ak2_A Adenylate kinase isoenz 95.5 0.0098 3.3E-07 51.9 4.1 26 178-203 16-41 (233)
266 2yhs_A FTSY, cell division pro 95.5 0.017 5.8E-07 56.0 6.1 28 177-204 292-319 (503)
267 3gqb_B V-type ATP synthase bet 95.5 0.018 6.2E-07 55.0 6.1 99 169-267 137-261 (464)
268 2ff7_A Alpha-hemolysin translo 95.5 0.0069 2.4E-07 53.5 3.0 25 177-201 34-58 (247)
269 1vht_A Dephospho-COA kinase; s 95.5 0.0097 3.3E-07 51.2 3.9 23 178-200 4-26 (218)
270 2xb4_A Adenylate kinase; ATP-b 95.5 0.0096 3.3E-07 51.6 3.8 24 180-203 2-25 (223)
271 2ixe_A Antigen peptide transpo 95.5 0.0075 2.6E-07 54.1 3.2 25 177-201 44-68 (271)
272 2ghi_A Transport protein; mult 95.5 0.0085 2.9E-07 53.4 3.5 25 177-201 45-69 (260)
273 3crm_A TRNA delta(2)-isopenten 95.4 0.0092 3.1E-07 54.7 3.7 25 179-203 6-30 (323)
274 1e4v_A Adenylate kinase; trans 95.4 0.0094 3.2E-07 51.2 3.5 24 180-203 2-25 (214)
275 3be4_A Adenylate kinase; malar 95.4 0.0096 3.3E-07 51.3 3.6 25 179-203 6-30 (217)
276 2yz2_A Putative ABC transporte 95.4 0.008 2.7E-07 53.7 3.2 25 177-201 32-56 (266)
277 2v9p_A Replication protein E1; 95.4 0.0093 3.2E-07 54.3 3.6 27 176-202 124-150 (305)
278 2qi9_C Vitamin B12 import ATP- 95.4 0.008 2.7E-07 53.2 3.1 25 177-201 25-49 (249)
279 3exa_A TRNA delta(2)-isopenten 95.4 0.01 3.4E-07 54.1 3.7 26 178-203 3-28 (322)
280 2qe7_A ATP synthase subunit al 95.4 0.035 1.2E-06 53.6 7.7 95 169-268 152-265 (502)
281 3upu_A ATP-dependent DNA helic 95.3 0.061 2.1E-06 52.0 9.5 44 161-205 29-72 (459)
282 2ihy_A ABC transporter, ATP-bi 95.3 0.0077 2.6E-07 54.2 2.9 25 177-201 46-70 (279)
283 1a7j_A Phosphoribulokinase; tr 95.3 0.007 2.4E-07 54.8 2.6 27 177-203 4-30 (290)
284 2nq2_C Hypothetical ABC transp 95.3 0.0083 2.8E-07 53.2 3.0 26 177-202 30-55 (253)
285 2f6r_A COA synthase, bifunctio 95.3 0.011 3.6E-07 53.4 3.7 24 177-200 74-97 (281)
286 2r9v_A ATP synthase subunit al 95.3 0.05 1.7E-06 52.6 8.4 95 169-268 165-278 (515)
287 3foz_A TRNA delta(2)-isopenten 95.3 0.012 4E-07 53.5 3.8 27 177-203 9-35 (316)
288 3a8t_A Adenylate isopentenyltr 95.2 0.0092 3.2E-07 54.9 3.1 26 178-203 40-65 (339)
289 3fwy_A Light-independent proto 95.2 0.016 5.4E-07 53.1 4.6 30 176-205 46-75 (314)
290 4eaq_A DTMP kinase, thymidylat 95.2 0.015 5.3E-07 50.6 4.2 28 177-204 25-52 (229)
291 1fx0_A ATP synthase alpha chai 95.2 0.049 1.7E-06 52.7 8.0 85 178-267 163-265 (507)
292 3fvq_A Fe(3+) IONS import ATP- 95.2 0.011 3.9E-07 55.0 3.5 24 177-200 29-52 (359)
293 1oix_A RAS-related protein RAB 95.2 0.012 4E-07 49.5 3.3 25 178-202 29-53 (191)
294 3oaa_A ATP synthase subunit al 95.1 0.075 2.6E-06 51.3 9.1 94 169-267 152-264 (513)
295 3p32_A Probable GTPase RV1496/ 95.1 0.034 1.2E-06 51.8 6.7 38 166-203 65-104 (355)
296 4akg_A Glutathione S-transfera 95.1 0.062 2.1E-06 62.3 9.9 128 179-324 1268-1431(2695)
297 3sop_A Neuronal-specific septi 95.1 0.011 3.7E-07 53.0 3.1 23 180-202 4-26 (270)
298 1ltq_A Polynucleotide kinase; 95.1 0.013 4.6E-07 53.0 3.7 23 179-201 3-25 (301)
299 2pjz_A Hypothetical protein ST 95.1 0.011 3.6E-07 52.8 2.9 24 178-201 30-53 (263)
300 3zvl_A Bifunctional polynucleo 95.1 0.011 3.7E-07 56.5 3.2 27 176-202 256-282 (416)
301 3cmw_A Protein RECA, recombina 95.1 0.063 2.1E-06 59.6 9.4 84 177-268 731-821 (1706)
302 3llm_A ATP-dependent RNA helic 95.0 0.078 2.7E-06 46.1 8.4 22 179-200 77-98 (235)
303 1zu4_A FTSY; GTPase, signal re 95.0 0.02 7E-07 52.5 4.8 39 177-219 104-142 (320)
304 2f9l_A RAB11B, member RAS onco 95.0 0.013 4.5E-07 49.4 3.3 23 179-201 6-28 (199)
305 3rlf_A Maltose/maltodextrin im 95.0 0.015 5E-07 54.7 3.8 25 177-201 28-52 (381)
306 2yyz_A Sugar ABC transporter, 95.0 0.014 4.9E-07 54.4 3.7 25 177-201 28-52 (359)
307 1g8f_A Sulfate adenylyltransfe 95.0 0.031 1E-06 54.6 6.2 46 159-204 374-421 (511)
308 1cr0_A DNA primase/helicase; R 95.0 0.058 2E-06 48.7 7.8 40 177-219 34-73 (296)
309 2it1_A 362AA long hypothetical 95.0 0.015 5E-07 54.4 3.8 25 177-201 28-52 (362)
310 1z47_A CYSA, putative ABC-tran 95.0 0.013 4.5E-07 54.5 3.3 25 177-201 40-64 (355)
311 1nlf_A Regulatory protein REPA 95.0 0.012 4.2E-07 52.8 3.1 26 178-203 30-55 (279)
312 3tui_C Methionine import ATP-b 95.0 0.015 5.2E-07 54.3 3.8 24 177-200 53-76 (366)
313 3nh6_A ATP-binding cassette SU 95.0 0.011 3.6E-07 54.0 2.7 25 177-201 79-103 (306)
314 3kta_A Chromosome segregation 94.9 0.015 5.1E-07 48.3 3.4 25 179-203 27-51 (182)
315 2bbs_A Cystic fibrosis transme 94.9 0.014 4.7E-07 52.9 3.3 26 177-202 63-88 (290)
316 1v43_A Sugar-binding transport 94.9 0.016 5.5E-07 54.3 3.8 24 177-200 36-59 (372)
317 1q3t_A Cytidylate kinase; nucl 94.9 0.02 6.7E-07 50.0 4.2 27 177-203 15-41 (236)
318 1svm_A Large T antigen; AAA+ f 94.9 0.017 5.7E-07 54.3 3.9 27 176-202 167-193 (377)
319 2j9r_A Thymidine kinase; TK1, 94.9 0.013 4.6E-07 50.2 2.9 110 177-296 27-139 (214)
320 2zej_A Dardarin, leucine-rich 94.8 0.015 5E-07 48.5 3.0 21 180-200 4-24 (184)
321 2wji_A Ferrous iron transport 94.8 0.017 5.9E-07 47.1 3.3 23 179-201 4-26 (165)
322 1g29_1 MALK, maltose transport 94.8 0.016 5.6E-07 54.3 3.6 25 177-201 28-52 (372)
323 3d31_A Sulfate/molybdate ABC t 94.8 0.013 4.5E-07 54.4 2.9 25 177-201 25-49 (348)
324 2dyk_A GTP-binding protein; GT 94.8 0.021 7E-07 46.0 3.8 23 179-201 2-24 (161)
325 2yv5_A YJEQ protein; hydrolase 94.8 0.027 9.3E-07 51.2 4.9 34 166-203 156-189 (302)
326 3cr8_A Sulfate adenylyltranfer 94.7 0.03 1E-06 55.3 5.4 45 160-204 349-395 (552)
327 3thx_A DNA mismatch repair pro 94.7 0.016 5.3E-07 60.9 3.4 23 177-199 661-683 (934)
328 3eph_A TRNA isopentenyltransfe 94.7 0.019 6.6E-07 54.1 3.7 25 179-203 3-27 (409)
329 2vp4_A Deoxynucleoside kinase; 94.7 0.013 4.6E-07 50.9 2.5 25 177-201 19-43 (230)
330 3gqb_A V-type ATP synthase alp 94.7 0.038 1.3E-06 53.9 5.7 93 169-267 211-328 (578)
331 1g5t_A COB(I)alamin adenosyltr 94.6 0.09 3.1E-06 44.4 7.3 112 178-296 28-164 (196)
332 1oxx_K GLCV, glucose, ABC tran 94.6 0.012 4.2E-07 54.7 2.1 24 177-200 30-53 (353)
333 2qmh_A HPR kinase/phosphorylas 94.6 0.017 6E-07 48.9 2.8 25 178-202 34-58 (205)
334 2ocp_A DGK, deoxyguanosine kin 94.6 0.022 7.5E-07 49.8 3.7 26 178-203 2-27 (241)
335 2ged_A SR-beta, signal recogni 94.6 0.047 1.6E-06 45.5 5.6 25 177-201 47-71 (193)
336 1tq4_A IIGP1, interferon-induc 94.5 0.026 8.9E-07 53.6 4.3 24 177-200 68-91 (413)
337 2ewv_A Twitching motility prot 94.5 0.026 8.9E-07 53.0 4.2 109 176-297 134-246 (372)
338 1nij_A Hypothetical protein YJ 94.5 0.019 6.4E-07 52.7 3.1 26 177-202 3-28 (318)
339 1lw7_A Transcriptional regulat 94.5 0.022 7.5E-07 53.3 3.6 26 178-203 170-195 (365)
340 1z2a_A RAS-related protein RAB 94.5 0.023 7.8E-07 46.0 3.3 23 179-201 6-28 (168)
341 1p9r_A General secretion pathw 94.5 0.036 1.2E-06 52.9 5.1 35 168-203 158-192 (418)
342 3gd7_A Fusion complex of cysti 94.5 0.021 7.4E-07 53.8 3.5 24 177-200 46-69 (390)
343 1yrb_A ATP(GTP)binding protein 94.5 0.029 9.9E-07 49.5 4.2 27 177-203 13-39 (262)
344 2ce2_X GTPase HRAS; signaling 94.4 0.022 7.5E-07 45.8 3.1 22 180-201 5-26 (166)
345 2wjg_A FEOB, ferrous iron tran 94.4 0.026 9E-07 46.8 3.6 23 179-201 8-30 (188)
346 3f9v_A Minichromosome maintena 94.4 0.012 4.1E-07 58.9 1.6 23 180-202 329-351 (595)
347 1u0l_A Probable GTPase ENGC; p 94.4 0.036 1.2E-06 50.4 4.7 34 166-202 160-193 (301)
348 3cmu_A Protein RECA, recombina 94.3 0.12 4.2E-06 58.1 9.5 84 177-268 382-472 (2050)
349 2nzj_A GTP-binding protein REM 94.3 0.025 8.7E-07 46.1 3.2 23 179-201 5-27 (175)
350 1kao_A RAP2A; GTP-binding prot 94.2 0.028 9.5E-07 45.3 3.3 22 180-201 5-26 (167)
351 2v3c_C SRP54, signal recogniti 94.2 0.024 8.2E-07 54.3 3.3 26 178-203 99-124 (432)
352 3hjn_A DTMP kinase, thymidylat 94.2 0.25 8.6E-06 41.7 9.4 26 180-205 2-27 (197)
353 2qm8_A GTPase/ATPase; G protei 94.2 0.03 1E-06 51.8 3.9 28 176-203 53-80 (337)
354 1u8z_A RAS-related protein RAL 94.2 0.028 9.6E-07 45.3 3.3 23 179-201 5-27 (168)
355 1fzq_A ADP-ribosylation factor 94.2 0.038 1.3E-06 45.8 4.1 26 176-201 14-39 (181)
356 2h92_A Cytidylate kinase; ross 94.2 0.029 9.9E-07 48.1 3.4 25 179-203 4-28 (219)
357 1nrj_B SR-beta, signal recogni 94.2 0.034 1.2E-06 47.4 3.9 26 177-202 11-36 (218)
358 1r8s_A ADP-ribosylation factor 94.2 0.031 1.1E-06 45.1 3.4 21 181-201 3-23 (164)
359 1z08_A RAS-related protein RAB 94.2 0.03 1E-06 45.4 3.3 23 179-201 7-29 (170)
360 1moz_A ARL1, ADP-ribosylation 94.2 0.032 1.1E-06 46.0 3.6 33 168-200 7-40 (183)
361 1c1y_A RAS-related protein RAP 94.1 0.029 1E-06 45.3 3.3 22 180-201 5-26 (167)
362 2www_A Methylmalonic aciduria 94.1 0.06 2E-06 50.0 5.7 27 177-203 73-99 (349)
363 1z0j_A RAB-22, RAS-related pro 94.1 0.031 1.1E-06 45.3 3.3 24 179-202 7-30 (170)
364 1ek0_A Protein (GTP-binding pr 94.1 0.03 1E-06 45.3 3.3 23 180-202 5-27 (170)
365 3con_A GTPase NRAS; structural 94.1 0.03 1E-06 46.6 3.3 23 179-201 22-44 (190)
366 4edh_A DTMP kinase, thymidylat 94.1 0.047 1.6E-06 46.9 4.5 31 178-209 6-36 (213)
367 3end_A Light-independent proto 94.1 0.043 1.5E-06 49.8 4.6 31 175-205 38-68 (307)
368 1ky3_A GTP-binding protein YPT 94.1 0.031 1.1E-06 45.8 3.3 25 177-201 7-31 (182)
369 2gza_A Type IV secretion syste 94.1 0.024 8.1E-07 53.0 2.8 26 178-203 175-200 (361)
370 4gzl_A RAS-related C3 botulinu 94.1 0.032 1.1E-06 47.2 3.5 34 168-201 20-53 (204)
371 1wms_A RAB-9, RAB9, RAS-relate 94.1 0.032 1.1E-06 45.7 3.3 23 179-201 8-30 (177)
372 2lkc_A Translation initiation 94.0 0.039 1.3E-06 45.1 3.9 25 177-201 7-31 (178)
373 3ihw_A Centg3; RAS, centaurin, 94.0 0.032 1.1E-06 46.4 3.3 23 179-201 21-43 (184)
374 2gj8_A MNME, tRNA modification 94.0 0.028 9.5E-07 46.3 2.9 23 179-201 5-27 (172)
375 3q85_A GTP-binding protein REM 94.0 0.03 1E-06 45.4 3.1 20 180-199 4-23 (169)
376 2fz4_A DNA repair protein RAD2 94.0 0.43 1.5E-05 41.4 10.8 22 181-202 111-132 (237)
377 1zj6_A ADP-ribosylation factor 94.0 0.057 1.9E-06 44.8 4.9 34 167-201 6-39 (187)
378 1m8p_A Sulfate adenylyltransfe 94.0 0.066 2.3E-06 53.2 6.0 29 176-204 394-422 (573)
379 3q72_A GTP-binding protein RAD 94.0 0.027 9.2E-07 45.5 2.7 21 180-200 4-24 (166)
380 2erx_A GTP-binding protein DI- 94.0 0.032 1.1E-06 45.2 3.2 23 179-201 4-26 (172)
381 1f2t_A RAD50 ABC-ATPase; DNA d 94.0 0.041 1.4E-06 44.3 3.7 25 178-202 23-47 (149)
382 3t1o_A Gliding protein MGLA; G 93.9 0.033 1.1E-06 46.4 3.3 24 179-202 15-38 (198)
383 4b3f_X DNA-binding protein smu 93.9 0.066 2.2E-06 54.1 6.0 57 165-229 194-254 (646)
384 1m7b_A RND3/RHOE small GTP-bin 93.9 0.031 1.1E-06 46.3 3.1 23 179-201 8-30 (184)
385 3fdi_A Uncharacterized protein 93.9 0.037 1.3E-06 47.1 3.6 25 179-203 7-31 (201)
386 1r2q_A RAS-related protein RAB 93.9 0.035 1.2E-06 44.9 3.3 23 179-201 7-29 (170)
387 1g16_A RAS-related protein SEC 93.9 0.032 1.1E-06 45.1 3.1 23 179-201 4-26 (170)
388 1pui_A ENGB, probable GTP-bind 93.9 0.022 7.4E-07 48.4 2.0 25 176-200 24-48 (210)
389 2obl_A ESCN; ATPase, hydrolase 93.8 0.035 1.2E-06 51.5 3.6 28 176-203 69-96 (347)
390 2fn4_A P23, RAS-related protei 93.8 0.034 1.2E-06 45.5 3.1 24 178-201 9-32 (181)
391 2axn_A 6-phosphofructo-2-kinas 93.8 0.044 1.5E-06 53.8 4.3 27 177-203 34-60 (520)
392 3ld9_A DTMP kinase, thymidylat 93.8 0.053 1.8E-06 46.9 4.3 30 175-204 18-47 (223)
393 1upt_A ARL1, ADP-ribosylation 93.8 0.038 1.3E-06 44.8 3.3 23 179-201 8-30 (171)
394 2qnr_A Septin-2, protein NEDD5 93.8 0.026 8.8E-07 51.4 2.4 21 180-200 20-40 (301)
395 2hxs_A RAB-26, RAS-related pro 93.7 0.034 1.2E-06 45.5 2.9 23 179-201 7-29 (178)
396 1z0f_A RAB14, member RAS oncog 93.7 0.038 1.3E-06 45.1 3.3 25 178-202 15-39 (179)
397 3v9p_A DTMP kinase, thymidylat 93.7 0.04 1.4E-06 47.9 3.5 28 178-205 25-52 (227)
398 4dsu_A GTPase KRAS, isoform 2B 93.7 0.039 1.3E-06 45.6 3.3 23 180-202 6-28 (189)
399 3c5c_A RAS-like protein 12; GD 93.7 0.04 1.4E-06 45.9 3.3 24 178-201 21-44 (187)
400 3bc1_A RAS-related protein RAB 93.7 0.039 1.3E-06 45.7 3.3 24 178-201 11-34 (195)
401 3lv8_A DTMP kinase, thymidylat 93.7 0.054 1.8E-06 47.3 4.3 39 178-219 27-65 (236)
402 1m2o_B GTP-binding protein SAR 93.7 0.036 1.2E-06 46.3 3.1 24 178-201 23-46 (190)
403 1p5z_B DCK, deoxycytidine kina 93.7 0.019 6.5E-07 51.0 1.3 27 177-203 23-49 (263)
404 2qag_B Septin-6, protein NEDD5 93.7 0.033 1.1E-06 53.0 3.0 21 181-201 45-65 (427)
405 3tw8_B RAS-related protein RAB 93.7 0.037 1.3E-06 45.3 3.0 24 178-201 9-32 (181)
406 3kkq_A RAS-related protein M-R 93.6 0.041 1.4E-06 45.3 3.3 24 178-201 18-41 (183)
407 2oil_A CATX-8, RAS-related pro 93.6 0.041 1.4E-06 45.9 3.3 24 178-201 25-48 (193)
408 2cjw_A GTP-binding protein GEM 93.6 0.043 1.5E-06 46.0 3.4 22 179-200 7-28 (192)
409 2r8r_A Sensor protein; KDPD, P 93.6 0.059 2E-06 46.6 4.2 26 180-205 8-33 (228)
410 1svi_A GTP-binding protein YSX 93.6 0.043 1.5E-06 45.7 3.4 25 177-201 22-46 (195)
411 2iwr_A Centaurin gamma 1; ANK 93.6 0.032 1.1E-06 45.8 2.5 23 179-201 8-30 (178)
412 2efe_B Small GTP-binding prote 93.6 0.044 1.5E-06 45.0 3.3 23 179-201 13-35 (181)
413 1mh1_A RAC1; GTP-binding, GTPa 93.6 0.043 1.5E-06 45.2 3.3 22 180-201 7-28 (186)
414 2y8e_A RAB-protein 6, GH09086P 93.5 0.04 1.4E-06 45.0 3.1 23 179-201 15-37 (179)
415 2npi_A Protein CLP1; CLP1-PCF1 93.5 0.035 1.2E-06 53.6 3.1 26 177-202 137-162 (460)
416 2bme_A RAB4A, RAS-related prot 93.5 0.04 1.4E-06 45.5 3.1 23 179-201 11-33 (186)
417 1f6b_A SAR1; gtpases, N-termin 93.5 0.056 1.9E-06 45.5 4.0 24 177-200 24-47 (198)
418 2pt7_A CAG-ALFA; ATPase, prote 93.5 0.027 9.3E-07 51.9 2.1 105 178-297 171-277 (330)
419 3cbq_A GTP-binding protein REM 93.5 0.032 1.1E-06 47.0 2.4 22 178-199 23-44 (195)
420 2rcn_A Probable GTPase ENGC; Y 93.5 0.042 1.4E-06 51.1 3.4 24 179-202 216-239 (358)
421 2a9k_A RAS-related protein RAL 93.5 0.045 1.5E-06 45.1 3.3 24 178-201 18-41 (187)
422 3bwd_D RAC-like GTP-binding pr 93.5 0.045 1.6E-06 44.9 3.3 23 179-201 9-31 (182)
423 2g6b_A RAS-related protein RAB 93.5 0.046 1.6E-06 44.8 3.3 23 179-201 11-33 (180)
424 2gks_A Bifunctional SAT/APS ki 93.5 0.11 3.8E-06 51.3 6.5 46 159-204 351-398 (546)
425 3euj_A Chromosome partition pr 93.5 0.042 1.4E-06 53.3 3.4 24 179-202 30-53 (483)
426 4tmk_A Protein (thymidylate ki 93.4 0.066 2.3E-06 46.0 4.3 27 179-205 4-30 (213)
427 2bov_A RAla, RAS-related prote 93.4 0.046 1.6E-06 46.0 3.3 24 178-201 14-37 (206)
428 3dz8_A RAS-related protein RAB 93.4 0.045 1.5E-06 45.6 3.2 24 179-202 24-47 (191)
429 1vg8_A RAS-related protein RAB 93.4 0.047 1.6E-06 46.0 3.3 24 178-201 8-31 (207)
430 2atv_A RERG, RAS-like estrogen 93.4 0.048 1.6E-06 45.7 3.3 25 177-201 27-51 (196)
431 3clv_A RAB5 protein, putative; 93.4 0.047 1.6E-06 45.6 3.3 24 178-201 7-30 (208)
432 2orv_A Thymidine kinase; TP4A 93.4 0.069 2.4E-06 46.3 4.3 104 178-294 19-125 (234)
433 2cxx_A Probable GTP-binding pr 93.4 0.038 1.3E-06 45.7 2.7 22 180-201 3-24 (190)
434 3pqc_A Probable GTP-binding pr 93.4 0.049 1.7E-06 45.2 3.4 24 178-201 23-46 (195)
435 3t5g_A GTP-binding protein RHE 93.3 0.045 1.5E-06 45.0 3.1 24 178-201 6-29 (181)
436 1ega_A Protein (GTP-binding pr 93.3 0.048 1.7E-06 49.5 3.4 25 177-201 7-31 (301)
437 1zd9_A ADP-ribosylation factor 93.3 0.05 1.7E-06 45.2 3.3 23 179-201 23-45 (188)
438 2dpy_A FLII, flagellum-specifi 93.3 0.05 1.7E-06 52.2 3.6 28 176-203 155-182 (438)
439 2p67_A LAO/AO transport system 93.3 0.061 2.1E-06 49.8 4.1 29 175-203 53-81 (341)
440 1yqt_A RNAse L inhibitor; ATP- 93.2 0.051 1.7E-06 53.7 3.7 24 178-201 47-70 (538)
441 2fg5_A RAB-22B, RAS-related pr 93.2 0.048 1.7E-06 45.5 3.1 25 178-202 23-47 (192)
442 2gf9_A RAS-related protein RAB 93.2 0.052 1.8E-06 45.1 3.3 24 178-201 22-45 (189)
443 2a5j_A RAS-related protein RAB 93.2 0.052 1.8E-06 45.2 3.3 23 179-201 22-44 (191)
444 3reg_A RHO-like small GTPase; 93.2 0.052 1.8E-06 45.3 3.3 25 178-202 23-47 (194)
445 3ozx_A RNAse L inhibitor; ATP 93.2 0.046 1.6E-06 53.9 3.3 25 177-201 24-48 (538)
446 3tkl_A RAS-related protein RAB 93.2 0.053 1.8E-06 45.2 3.3 25 178-202 16-40 (196)
447 2ew1_A RAS-related protein RAB 93.2 0.048 1.6E-06 46.2 3.1 24 178-201 26-49 (201)
448 2fh5_B SR-beta, signal recogni 93.2 0.052 1.8E-06 46.1 3.3 24 178-201 7-30 (214)
449 3tmk_A Thymidylate kinase; pho 93.2 0.062 2.1E-06 46.2 3.7 27 178-204 5-31 (216)
450 1gwn_A RHO-related GTP-binding 93.2 0.049 1.7E-06 46.2 3.1 24 178-201 28-51 (205)
451 1cp2_A CP2, nitrogenase iron p 93.1 0.069 2.4E-06 47.3 4.2 26 179-204 2-27 (269)
452 1z06_A RAS-related protein RAB 93.1 0.056 1.9E-06 44.9 3.3 24 178-201 20-43 (189)
453 3oes_A GTPase rhebl1; small GT 93.1 0.05 1.7E-06 45.8 3.1 26 177-202 23-48 (201)
454 2b6h_A ADP-ribosylation factor 93.1 0.047 1.6E-06 45.7 2.8 25 176-200 27-51 (192)
455 1yqt_A RNAse L inhibitor; ATP- 93.1 0.05 1.7E-06 53.7 3.4 26 177-202 311-336 (538)
456 2gf0_A GTP-binding protein DI- 93.1 0.052 1.8E-06 45.3 3.1 24 178-201 8-31 (199)
457 1bif_A 6-phosphofructo-2-kinas 93.1 0.065 2.2E-06 51.9 4.2 27 177-203 38-64 (469)
458 3cmw_A Protein RECA, recombina 93.1 0.27 9.4E-06 54.6 9.4 83 177-267 1430-1519(1706)
459 3j16_B RLI1P; ribosome recycli 93.1 0.056 1.9E-06 54.1 3.7 25 177-201 102-126 (608)
460 2p5s_A RAS and EF-hand domain 93.0 0.057 1.9E-06 45.4 3.3 25 177-201 27-51 (199)
461 1x3s_A RAS-related protein RAB 93.0 0.057 2E-06 44.9 3.3 23 179-201 16-38 (195)
462 3ozx_A RNAse L inhibitor; ATP 93.0 0.044 1.5E-06 54.0 2.9 25 178-202 294-318 (538)
463 1ksh_A ARF-like protein 2; sma 93.0 0.065 2.2E-06 44.3 3.5 27 176-202 16-42 (186)
464 2afh_E Nitrogenase iron protei 93.0 0.081 2.8E-06 47.5 4.4 27 178-204 2-28 (289)
465 1zbd_A Rabphilin-3A; G protein 93.0 0.055 1.9E-06 45.5 3.1 23 179-201 9-31 (203)
466 3e2i_A Thymidine kinase; Zn-bi 93.0 0.034 1.2E-06 47.6 1.7 85 177-268 27-112 (219)
467 2g3y_A GTP-binding protein GEM 92.9 0.057 1.9E-06 46.3 3.2 23 178-200 37-59 (211)
468 2bcg_Y Protein YP2, GTP-bindin 92.9 0.055 1.9E-06 45.6 3.1 23 179-201 9-31 (206)
469 4bas_A ADP-ribosylation factor 92.9 0.066 2.2E-06 44.7 3.5 25 177-201 16-40 (199)
470 3b5x_A Lipid A export ATP-bind 92.9 0.057 2E-06 53.9 3.5 25 177-201 368-392 (582)
471 3k53_A Ferrous iron transport 92.9 0.063 2.1E-06 47.8 3.5 24 178-201 3-26 (271)
472 3bk7_A ABC transporter ATP-bin 92.9 0.056 1.9E-06 54.1 3.4 26 177-202 381-406 (607)
473 3ch4_B Pmkase, phosphomevalona 92.8 0.091 3.1E-06 44.6 4.2 27 177-203 10-36 (202)
474 1x6v_B Bifunctional 3'-phospho 92.8 0.073 2.5E-06 53.2 4.1 27 177-203 51-77 (630)
475 3llu_A RAS-related GTP-binding 92.8 0.056 1.9E-06 45.3 2.9 24 178-201 20-43 (196)
476 3cph_A RAS-related protein SEC 92.8 0.065 2.2E-06 45.3 3.3 24 178-201 20-43 (213)
477 3j16_B RLI1P; ribosome recycli 92.7 0.06 2E-06 53.9 3.4 24 179-202 379-402 (608)
478 3lxx_A GTPase IMAP family memb 92.7 0.073 2.5E-06 46.3 3.6 25 177-201 28-52 (239)
479 2qu8_A Putative nucleolar GTP- 92.7 0.076 2.6E-06 45.8 3.7 25 177-201 28-52 (228)
480 3b60_A Lipid A export ATP-bind 92.7 0.059 2E-06 53.8 3.4 25 177-201 368-392 (582)
481 2q3h_A RAS homolog gene family 92.7 0.063 2.2E-06 45.0 3.1 24 178-201 20-43 (201)
482 2fv8_A H6, RHO-related GTP-bin 92.7 0.063 2.2E-06 45.4 3.1 23 179-201 26-48 (207)
483 2atx_A Small GTP binding prote 92.6 0.066 2.2E-06 44.6 3.1 23 179-201 19-41 (194)
484 2qag_C Septin-7; cell cycle, c 92.6 0.051 1.8E-06 51.7 2.6 21 181-201 34-54 (418)
485 2il1_A RAB12; G-protein, GDP, 92.6 0.063 2.2E-06 44.8 2.9 23 179-201 27-49 (192)
486 2o52_A RAS-related protein RAB 92.6 0.062 2.1E-06 45.3 2.9 24 178-201 25-48 (200)
487 2fu5_C RAS-related protein RAB 92.6 0.04 1.4E-06 45.4 1.6 23 179-201 9-31 (183)
488 1c9k_A COBU, adenosylcobinamid 92.6 0.062 2.1E-06 44.8 2.7 22 180-201 1-22 (180)
489 2hup_A RAS-related protein RAB 92.5 0.069 2.4E-06 45.0 3.1 24 178-201 29-52 (201)
490 4dkx_A RAS-related protein RAB 92.5 0.073 2.5E-06 45.8 3.3 22 180-201 15-36 (216)
491 3hdt_A Putative kinase; struct 92.5 0.088 3E-06 45.5 3.8 26 178-203 14-39 (223)
492 3q3j_B RHO-related GTP-binding 92.5 0.074 2.5E-06 45.4 3.3 23 179-201 28-50 (214)
493 3qks_A DNA double-strand break 92.5 0.089 3E-06 44.7 3.7 26 178-203 23-48 (203)
494 3iev_A GTP-binding protein ERA 92.5 0.072 2.5E-06 48.5 3.3 25 177-201 9-33 (308)
495 2yl4_A ATP-binding cassette SU 92.4 0.059 2E-06 53.9 3.0 25 177-201 369-393 (595)
496 2j1l_A RHO-related GTP-binding 92.4 0.067 2.3E-06 45.6 2.9 24 178-201 34-57 (214)
497 2j0v_A RAC-like GTP-binding pr 92.4 0.071 2.4E-06 45.2 3.1 23 179-201 10-32 (212)
498 2gco_A H9, RHO-related GTP-bin 92.4 0.072 2.5E-06 44.8 3.1 23 179-201 26-48 (201)
499 3bk7_A ABC transporter ATP-bin 92.4 0.074 2.5E-06 53.2 3.5 25 177-201 116-140 (607)
500 3io3_A DEHA2D07832P; chaperone 92.4 0.1 3.5E-06 48.4 4.2 31 173-203 13-43 (348)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.7e-32 Score=272.08 Aligned_cols=192 Identities=15% Similarity=0.199 Sum_probs=161.2
Q ss_pred cchHHHHHHHHHHhccC---CceEEEEEcCCCCchHHHHHHHHH--HhhhhCCCCCceEEEEEcCC-----HHHHHHHHH
Q 038663 160 ESSSKALNSIMKLLKDE---KVNIIGVQGPGGVGKSTLMEQLAK--QIDTIAPYDKAHVIVAESSD-----LRRIQDKIA 229 (385)
Q Consensus 160 ~gr~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~F~~~~~~wv~vs~-----~~~l~~~i~ 229 (385)
+||+.++++|.++|..+ +.++|+|+||||+||||||+++|+ +.+...+|+ .++|++++. ...++..|+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD--SIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBS--EEEEEECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCC--cEEEEEECCCCCCCHHHHHHHHH
Confidence 49999999999999643 679999999999999999999998 466678899 999999993 678999999
Q ss_pred HHhcCccc--------cccHHHHHHHHHHHHHhcCC-cEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhhh
Q 038663 230 ELLKFKIE--------EENELQRRATLAKRLRERTK-KVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCSK 300 (385)
Q Consensus 230 ~~l~~~~~--------~~~~~~~~~~l~~~l~~~~k-r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~ 300 (385)
.+++.... ..+...+...+.+.|.+ + ||||||||||+..++ .+. ..+||+||||||+..++..
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~--~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALID--RPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTT--STTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGG
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcC--CCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHH
Confidence 99875421 22345577889999998 7 999999999998754 111 1268999999999999988
Q ss_pred cC--CceEEcCCCCHHHHHHHHHHhhCCC-CCcchHHHHHHHHHHhCCChHHHHHHHHHhcCCC
Q 038663 301 MS--DVTVQIEELGEEDRLKLFKQIARLP-DSEAFEGAAKVIVKACGSLPSAIAIVAGALRGKL 361 (385)
Q Consensus 301 ~~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~ 361 (385)
++ ...|+|++|+.+++|+||.+.++.. .++.+.+++++|+++|+|+||||.++|++|+.+.
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~ 344 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT 344 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch
Confidence 76 4679999999999999999998655 3477888999999999999999999999997653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=1.9e-28 Score=267.64 Aligned_cols=211 Identities=20% Similarity=0.302 Sum_probs=167.4
Q ss_pred CCCCCcchHHHHHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHhhh-hCCCCCceEEEEEcC-----CHHHHHH
Q 038663 155 DYVPLESSSKALNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQIDT-IAPYDKAHVIVAESS-----DLRRIQD 226 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~~~wv~vs-----~~~~l~~ 226 (385)
....|+||+.++++|.++|. +++.++|+|+||||+||||||+++|++.+. ..+|.+ .++|++++ +....+.
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSG-GVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTT-CEEEEECCSCCHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCC-eEEEEEECCcCchHHHHHHH
Confidence 34569999999999999995 456899999999999999999999988644 344542 78899998 2334456
Q ss_pred HHHHHhcCcc-----ccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhhhc
Q 038663 227 KIAELLKFKI-----EEENELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCSKM 301 (385)
Q Consensus 227 ~i~~~l~~~~-----~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~ 301 (385)
.++..+.... ...+...+...++..+.+..+|+||||||+|+...|..+ .+||+||+|||+..++..+
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhh
Confidence 6666665422 123456677888888887334999999999998877654 4689999999999998654
Q ss_pred -C-CceEEcCC-CCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhcCCCCCCcchhhhhhHHHHHH
Q 038663 302 -S-DVTVQIEE-LGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALRGKLANESNESLVNIWNDAVE 378 (385)
Q Consensus 302 -~-~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~~~~~~~~~~~~W~~~~~ 378 (385)
. ...+.+.+ |+.+++++||...++.. .+...+.+++|+++|+|+||||..+|++|+.++ ..|+.+++
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~---------~~~~~~l~ 343 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMK-KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP---------NRWAYYLR 343 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSC-STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS---------SCHHHHHH
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCC-hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh---------hHHHHHHH
Confidence 4 77899996 99999999999988543 334456789999999999999999999999876 47998888
Q ss_pred HHHhh
Q 038663 379 EVIRE 383 (385)
Q Consensus 379 ~l~~~ 383 (385)
++...
T Consensus 344 ~l~~~ 348 (1249)
T 3sfz_A 344 QLQNK 348 (1249)
T ss_dssp HHHSC
T ss_pred HHhhh
Confidence 88653
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.95 E-value=2.3e-27 Score=244.52 Aligned_cols=196 Identities=16% Similarity=0.205 Sum_probs=150.1
Q ss_pred CcchHHHHHHHHHHhcc-CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHHHHhcC
Q 038663 159 LESSSKALNSIMKLLKD-EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIAELLKF 234 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~~~l~~ 234 (385)
.+||+.+++.|.++|.. +..++|+|+||||+||||||+.+|++.+...+|+. .++|++++ +...++..+++.+..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~-gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSS-CEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCC-cEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 48999999999999975 56789999999999999999999998766677982 38999998 666777777665432
Q ss_pred c-------cc-----cccHHHHHHHHHHHHHh-cCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhhhc
Q 038663 235 K-------IE-----EENELQRRATLAKRLRE-RTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCSKM 301 (385)
Q Consensus 235 ~-------~~-----~~~~~~~~~~l~~~l~~-~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~ 301 (385)
. .. ..+...+...+.+.|+. .++|+||||||+|+...|..+. .||+||||||+..++..+
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhc
Confidence 1 00 01233455667776621 1299999999999988888652 589999999999988655
Q ss_pred C-CceEEcC------CCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhcCCCCCCcchhhhhhHH
Q 038663 302 S-DVTVQIE------ELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALRGKLANESNESLVNIWN 374 (385)
Q Consensus 302 ~-~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~~~~~~~~~~~~W~ 374 (385)
. ...+.++ +|+.+|+|+||.+..+... .+...+ .|+|+||||.++|+.|+.+.. +.++|+
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~----eeL~~e---ICgGLPLALkLaGs~Lr~k~~------s~eeW~ 348 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPRE---VLTTNPRRLSIIAESIRDGLA------TWDNWK 348 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCT----TTHHHH---HCCCCHHHHHHHHHHHHHSCS------SHHHHH
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCCH----HHHHHH---HhCCCHHHHHHHHHHHhCCCC------CHHHHh
Confidence 4 3456666 9999999999999976431 123333 399999999999999998853 378886
Q ss_pred H
Q 038663 375 D 375 (385)
Q Consensus 375 ~ 375 (385)
.
T Consensus 349 ~ 349 (1221)
T 1vt4_I 349 H 349 (1221)
T ss_dssp H
T ss_pred c
Confidence 4
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=233.80 Aligned_cols=209 Identities=20% Similarity=0.301 Sum_probs=160.6
Q ss_pred CCCCcchHHHHHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHhhh-hCCCCCceEEEEEcC--CHHHHHHHH--
Q 038663 156 YVPLESSSKALNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQIDT-IAPYDKAHVIVAESS--DLRRIQDKI-- 228 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~~~wv~vs--~~~~l~~~i-- 228 (385)
...|+||+.+++.|.++|. .++.++++|+||||+||||||..++++... ..+|.+ .++|++++ +...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~-~v~wv~~~~~~~~~~~~~l~~ 201 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPG-GVHWVSVGKQDKSGLLMKLQN 201 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTT-CEEEEEEESCCHHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCC-ceEEEECCCCchHHHHHHHHH
Confidence 4569999999999999997 356789999999999999999999987654 456842 79999998 344444444
Q ss_pred -HHHhcC-----ccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhhhcC
Q 038663 229 -AELLKF-----KIEEENELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCSKMS 302 (385)
Q Consensus 229 -~~~l~~-----~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~~~~ 302 (385)
+..++. .....+.......+...+.+..+++||||||+|+...+..+ ..|++||+|||+..++..+.
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC
Confidence 344442 11223456677788888877446899999999987766533 35789999999999877654
Q ss_pred CceEEc---CCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhcCCCCCCcchhhhhhHHHHHHH
Q 038663 303 DVTVQI---EELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALRGKLANESNESLVNIWNDAVEE 379 (385)
Q Consensus 303 ~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~~~~~~~~~~~~~~W~~~~~~ 379 (385)
...+++ ++|+.+++++||...++.. .....+.+.+|+++|+|+||||..+|+.|+.+. ..|+.+++.
T Consensus 275 ~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~---------~~w~~~l~~ 344 (591)
T 1z6t_A 275 GPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP---------NRWEYYLKQ 344 (591)
T ss_dssp SCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST---------TCHHHHHHH
T ss_pred CCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc---------hhHHHHHHH
Confidence 333444 6899999999999998753 222346788999999999999999999998876 479988888
Q ss_pred HHh
Q 038663 380 VIR 382 (385)
Q Consensus 380 l~~ 382 (385)
+..
T Consensus 345 l~~ 347 (591)
T 1z6t_A 345 LQN 347 (591)
T ss_dssp HHS
T ss_pred HHH
Confidence 764
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.66 E-value=2.2e-15 Score=141.83 Aligned_cols=190 Identities=12% Similarity=0.138 Sum_probs=127.4
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---------CHHHHHH
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---------DLRRIQD 226 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---------~~~~l~~ 226 (385)
...|+||+.+++.|.+++..+ +++.|+|++|+|||||++.+.+... .+|+... +...++.
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP---------GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS---------EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC---------cEEEEeecccccccCCCHHHHHH
Confidence 356999999999999988764 7999999999999999999987641 3455543 2345566
Q ss_pred HHHHHhcC-----------------cc--ccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh---------hhhhcCC
Q 038663 227 KIAELLKF-----------------KI--EEENELQRRATLAKRLRERTKKVLIILDDVREKIN---------LAVSGIP 278 (385)
Q Consensus 227 ~i~~~l~~-----------------~~--~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~---------~~~l~~~ 278 (385)
.+.+.+.. .. ...........+.+..... ++++|||||++.... +..+...
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEEL-GEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHH-SCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhcc-CCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 66655432 00 0123344555565555542 489999999987432 1222111
Q ss_pred CCCCCCCeEEEEeeCChhh-hh----------hcC--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCC
Q 038663 279 YGEEGNRCKVIVTSRRLDV-CS----------KMS--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGS 345 (385)
Q Consensus 279 ~~~~~~gs~iivTtr~~~v-~~----------~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~G 345 (385)
. +...+.++|+|++.... .. ..+ ...+++.||+.+++.+++.+.++........+.+..|+..|+|
T Consensus 159 ~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 159 Y-DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDG 237 (350)
T ss_dssp H-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTT
T ss_pred H-HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 1 11247789999887643 11 111 3579999999999999998865322111123567889999999
Q ss_pred ChHHHHHHHHHhc
Q 038663 346 LPSAIAIVAGALR 358 (385)
Q Consensus 346 lPlai~~~~~~L~ 358 (385)
+|+++..++..+.
T Consensus 238 ~P~~l~~~~~~~~ 250 (350)
T 2qen_A 238 IPGWLVVFGVEYL 250 (350)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999987653
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.60 E-value=1.9e-14 Score=138.76 Aligned_cols=197 Identities=14% Similarity=0.137 Sum_probs=132.2
Q ss_pred CCCcchHHHHHHHHHHh-c----c--CCceEEEE--EcCCCCchHHHHHHHHHHhhhh---CCCCCceEEEEEcC---CH
Q 038663 157 VPLESSSKALNSIMKLL-K----D--EKVNIIGV--QGPGGVGKSTLMEQLAKQIDTI---APYDKAHVIVAESS---DL 221 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~L-~----~--~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~F~~~~~~wv~vs---~~ 221 (385)
..++||+.+++.|.+.+ . + .....+.| +|++|+|||||++.+++..... ..|. ...+|+... +.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLT-VKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCc-eeEEEEECCCCCCH
Confidence 46899999999999988 4 2 34567777 9999999999999999886542 1122 145677653 77
Q ss_pred HHHHHHHHHHhcCccc--cccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch--------hhhhhcCCC---CCCC--CCe
Q 038663 222 RRIQDKIAELLKFKIE--EENELQRRATLAKRLRERTKKVLIILDDVREKI--------NLAVSGIPY---GEEG--NRC 286 (385)
Q Consensus 222 ~~l~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~--------~~~~l~~~~---~~~~--~gs 286 (385)
..++..++..++...+ ..+.......+.+.+...+++++|||||++... .+..+...+ +..+ .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 8899999998876432 223455566777777633379999999998642 222222221 1112 456
Q ss_pred EEEEeeCChhhh-------h-hcC--CceEEcCCCCHHHHHHHHHHhhC---CCCCcchHHHHHHHHHHhC------CCh
Q 038663 287 KVIVTSRRLDVC-------S-KMS--DVTVQIEELGEEDRLKLFKQIAR---LPDSEAFEGAAKVIVKACG------SLP 347 (385)
Q Consensus 287 ~iivTtr~~~v~-------~-~~~--~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~~I~~~c~------GlP 347 (385)
.+|+||+...+. . ... ...+.+.||+.++.+++|...++ .. .....+....|++.|+ |.|
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCCcH
Confidence 688888755432 1 111 33499999999999999987652 21 1122467788999999 999
Q ss_pred HHHHHHHH
Q 038663 348 SAIAIVAG 355 (385)
Q Consensus 348 lai~~~~~ 355 (385)
..+..+..
T Consensus 260 ~~~~~l~~ 267 (412)
T 1w5s_A 260 RRAIVALK 267 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665543
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=1.5e-14 Score=136.51 Aligned_cols=188 Identities=15% Similarity=0.214 Sum_probs=121.3
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--------CHHHHHHH
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--------DLRRIQDK 227 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--------~~~~l~~~ 227 (385)
...|+||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+.... ..+|+... +...++..
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-------PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-------CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-------CEEEEEchhhccccCCCHHHHHHH
Confidence 3469999999999999 765 69999999999999999999987641 23566654 23445555
Q ss_pred HHHHhcC------------------ccc----ccc----HHHHHHHHHHHHHhcC-CcEEEEEeCCCcch-----hhhhh
Q 038663 228 IAELLKF------------------KIE----EEN----ELQRRATLAKRLRERT-KKVLIILDDVREKI-----NLAVS 275 (385)
Q Consensus 228 i~~~l~~------------------~~~----~~~----~~~~~~~l~~~l~~~~-kr~LlVlDdv~~~~-----~~~~l 275 (385)
+.+.+.. ..+ ... .......+.+.+.... ++++|||||++... ++..+
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 4443310 000 000 0112233444454421 38999999997642 22221
Q ss_pred cCCCCCCCCCeEEEEeeCChhhhh-h---------c-C--CceEEcCCCCHHHHHHHHHHhh---CCCCCcchHHHHHHH
Q 038663 276 GIPYGEEGNRCKVIVTSRRLDVCS-K---------M-S--DVTVQIEELGEEDRLKLFKQIA---RLPDSEAFEGAAKVI 339 (385)
Q Consensus 276 ~~~~~~~~~gs~iivTtr~~~v~~-~---------~-~--~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~~~~I 339 (385)
...+.+...+..+|+|++...... . . + ...+.+.||+.+++.+++.+.+ |..... . ..|
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-~----~~i 235 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-Y----EVV 235 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-H----HHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-H----HHH
Confidence 111111124678999999765311 1 1 1 3579999999999999998865 332222 1 679
Q ss_pred HHHhCCChHHHHHHHHHhcC
Q 038663 340 VKACGSLPSAIAIVAGALRG 359 (385)
Q Consensus 340 ~~~c~GlPlai~~~~~~L~~ 359 (385)
+..|+|+|+++..++..+..
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~ 255 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLD 255 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHcc
Confidence 99999999999999887653
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=3.7e-13 Score=128.25 Aligned_cols=196 Identities=15% Similarity=0.166 Sum_probs=129.2
Q ss_pred CCCcchHHHHHHHHHHhc----cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHH
Q 038663 157 VPLESSSKALNSIMKLLK----DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIA 229 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~ 229 (385)
..|+||+.+++.|.+++. +.....+.|+|++|+|||||++.+++........ +...+|+... +...++..++
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-KFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-SCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-CceEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999887 4456789999999999999999999987543110 1155666654 6667777777
Q ss_pred HHhcCccc--cccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch------hhhhhcCCCCC-CCCCeEEEEeeCChhhhhh
Q 038663 230 ELLKFKIE--EENELQRRATLAKRLRERTKKVLIILDDVREKI------NLAVSGIPYGE-EGNRCKVIVTSRRLDVCSK 300 (385)
Q Consensus 230 ~~l~~~~~--~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~------~~~~l~~~~~~-~~~gs~iivTtr~~~v~~~ 300 (385)
..++.... ..+.......+.+.+...+++.+|||||++... .+..+...+.. ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 77754322 223455566777777764368999999997642 22222111111 2335677888876643222
Q ss_pred cC--------CceEEcCCCCHHHHHHHHHHhhCC--CCCcchHHHHHHHHHHhC---CChHHHHHH
Q 038663 301 MS--------DVTVQIEELGEEDRLKLFKQIARL--PDSEAFEGAAKVIVKACG---SLPSAIAIV 353 (385)
Q Consensus 301 ~~--------~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~I~~~c~---GlPlai~~~ 353 (385)
+. ...+.++|++.++..+++.+.+.. ....-..+..+.+++.++ |.|..+..+
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~l 244 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDL 244 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 11 358999999999999999986521 111223456677888887 999854433
No 9
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.53 E-value=3.9e-13 Score=119.33 Aligned_cols=198 Identities=12% Similarity=0.104 Sum_probs=118.4
Q ss_pred CCCCcchHHHHHHHHHHhccCC-ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcC
Q 038663 156 YVPLESSSKALNSIMKLLKDEK-VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKF 234 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~ 234 (385)
...++||+..++.|..++.... .+.+.|+|++|+|||||++.+++.......+. .+.+.. ... ...+......
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~----~~~~~~-~~~-~~~~~~~~~~ 95 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT----ATPCGV-CDN-CREIEQGRFV 95 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSC----SSCCSC-SHH-HHHHHTTCCS
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC----CCCCcc-cHH-HHHHhccCCc
Confidence 4568999999999999987543 45889999999999999999998875322111 000000 000 0001000000
Q ss_pred -----ccccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChhh-hh-hcC
Q 038663 235 -----KIEEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLDV-CS-KMS 302 (385)
Q Consensus 235 -----~~~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~v-~~-~~~ 302 (385)
.............+.+.+.. .+++.+|||||++.. ..+..+...+.....++.+|+||+.... .. ...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~ 175 (250)
T 1njg_A 96 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 175 (250)
T ss_dssp SEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred ceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHH
Confidence 00000111111122222110 126799999999753 3444443333333457788888876542 11 122
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhcC
Q 038663 303 -DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALRG 359 (385)
Q Consensus 303 -~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~~ 359 (385)
...+++++++.++..+++.+.+......-..+..+.|++.|+|.|..+..+...+..
T Consensus 176 r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~ 233 (250)
T 1njg_A 176 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 233 (250)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 578999999999999999987732211222366778999999999999887755443
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.51 E-value=9.2e-13 Score=125.58 Aligned_cols=219 Identities=14% Similarity=0.086 Sum_probs=139.4
Q ss_pred CCCcchHHHHHHHHHHhc----cCCceEEEEEcCCCCchHHHHHHHHHHhhhhC---CCCCceEEEEEcC---CHHHHHH
Q 038663 157 VPLESSSKALNSIMKLLK----DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIA---PYDKAHVIVAESS---DLRRIQD 226 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~~~wv~vs---~~~~l~~ 226 (385)
..++||+.+++.+..++. ....+.+.|+|++|+|||||++.+++...... ... ...+|+... +...++.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVL-VKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCC-EEEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCC-eEEEEEECCcCCCHHHHHH
Confidence 458999999999999884 34567899999999999999999998864321 011 145566655 7778888
Q ss_pred HHHHHhcCccc--cccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh----hhhh---cCCCCCC--CCCeEEEEeeCCh
Q 038663 227 KIAELLKFKIE--EENELQRRATLAKRLRERTKKVLIILDDVREKIN----LAVS---GIPYGEE--GNRCKVIVTSRRL 295 (385)
Q Consensus 227 ~i~~~l~~~~~--~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~----~~~l---~~~~~~~--~~gs~iivTtr~~ 295 (385)
.++..++...+ ..+.......+.+.+...+++.+|+|||++.... ...+ ....... ..+..+|.||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 99998876433 2235556677777776544689999999986432 1211 1111111 3456777777765
Q ss_pred hhh--------hhcCCceEEcCCCCHHHHHHHHHHhhCC--CCCcchHHHHHHHHHHhC---CChHH-HHHHHHHhc---
Q 038663 296 DVC--------SKMSDVTVQIEELGEEDRLKLFKQIARL--PDSEAFEGAAKVIVKACG---SLPSA-IAIVAGALR--- 358 (385)
Q Consensus 296 ~v~--------~~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~I~~~c~---GlPla-i~~~~~~L~--- 358 (385)
... +.+....+.++|++.++..+++.+.+.. ....-..+..+.+++.++ |.|-. +..+.....
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 321 1111358999999999999999987632 111111245667888888 99943 333322221
Q ss_pred --CCCCCCcchhhhhhHHHHHHHHH
Q 038663 359 --GKLANESNESLVNIWNDAVEEVI 381 (385)
Q Consensus 359 --~~~~~~~~~~~~~~W~~~~~~l~ 381 (385)
... .++.+.++.+++.+.
T Consensus 258 ~~~~~-----~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 258 RRREE-----RVRREHVYSARAEIE 277 (387)
T ss_dssp HTTCS-----CBCHHHHHHHHHHHH
T ss_pred HcCCC-----CcCHHHHHHHHHHHh
Confidence 111 125788888877654
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=4.4e-12 Score=120.95 Aligned_cols=215 Identities=15% Similarity=0.129 Sum_probs=138.7
Q ss_pred CCCcchHHHHHHHHHHhc----cCCceEEEEEcCCCCchHHHHHHHHHHhhhh----CCCCCceEEEEEcC----CHHHH
Q 038663 157 VPLESSSKALNSIMKLLK----DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTI----APYDKAHVIVAESS----DLRRI 224 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~~~wv~vs----~~~~l 224 (385)
..++||+.+++.+.+++. +...+.+.|+|++|+|||+||+.+++..... ..+.+...+|+..+ +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 458999999999987775 3456789999999999999999999986432 11201155666544 56677
Q ss_pred HHHHHHHhc-Ccc--ccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh-------hhhhcCCCCCCCCCeEEEEeeCC
Q 038663 225 QDKIAELLK-FKI--EEENELQRRATLAKRLRERTKKVLIILDDVREKIN-------LAVSGIPYGEEGNRCKVIVTSRR 294 (385)
Q Consensus 225 ~~~i~~~l~-~~~--~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~iivTtr~ 294 (385)
+..++..+. ... ...+.......+.+.+.. ++.+|||||++.... +..+.... .+..+|+||+.
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~--~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~ 173 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN--IRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS--SCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSS
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc--CCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECC
Confidence 788888773 211 122234556677777777 555999999986432 22232222 57788999887
Q ss_pred hhhhhhc------C-CceEEcCCCCHHHHHHHHHHhhC--CCCCcchHHHHHHHHHHhC---CChHH-HHHHHHH--hcC
Q 038663 295 LDVCSKM------S-DVTVQIEELGEEDRLKLFKQIAR--LPDSEAFEGAAKVIVKACG---SLPSA-IAIVAGA--LRG 359 (385)
Q Consensus 295 ~~v~~~~------~-~~~~~l~~L~~~~~~~lf~~~~~--~~~~~~~~~~~~~I~~~c~---GlPla-i~~~~~~--L~~ 359 (385)
......+ . ...+.++|++.++..++|...+. .....-..+..+.|++.|+ |.|.. +..+-.. +..
T Consensus 174 ~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred CchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 6321111 1 34899999999999999998762 1111112355677888888 98873 3333322 222
Q ss_pred CCCCCcchhhhhhHHHHHHHHH
Q 038663 360 KLANESNESLVNIWNDAVEEVI 381 (385)
Q Consensus 360 ~~~~~~~~~~~~~W~~~~~~l~ 381 (385)
. ...++.+.+..+++++.
T Consensus 254 ~----~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 254 G----GGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp S----SSCCCHHHHHHHHHHHH
T ss_pred C----CCccCHHHHHHHHHHHh
Confidence 1 11226888888877654
No 12
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.44 E-value=3.6e-12 Score=111.53 Aligned_cols=178 Identities=12% Similarity=0.138 Sum_probs=113.8
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHHHHh
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIAELL 232 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~~~l 232 (385)
...++|++..++.+.+++.....+.+.|+|++|+|||+||+.+++...... +. ...+.+..+ ....+.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~------- 86 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-WR-DNFIEMNASDERGIDVVR------- 86 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-GG-GGEEEEETTCTTCHHHHH-------
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-cc-cceEEeccccccChHHHH-------
Confidence 456889999999999999876666699999999999999999998764321 11 022233332 111111
Q ss_pred cCccccccHHHHHHHHHHHHHh----cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChhh--hhhcC-C
Q 038663 233 KFKIEEENELQRRATLAKRLRE----RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLDV--CSKMS-D 303 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~v--~~~~~-~ 303 (385)
..+...... ..++.+|+|||++.. .....+...+.....++++|+||+.... ..... .
T Consensus 87 -------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 87 -------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp -------------HHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred -------------HHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 111122110 127899999999764 2233333223223456788888876542 11222 4
Q ss_pred ceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 038663 304 VTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAG 355 (385)
Q Consensus 304 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~ 355 (385)
..+.+.+++.++...++.+.+......-..+..+.|++.++|.|..+..+..
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5899999999999999998773211112235677899999999996555443
No 13
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=9.4e-12 Score=118.78 Aligned_cols=195 Identities=15% Similarity=0.147 Sum_probs=133.0
Q ss_pred CCCcchHHHHHHHHHHhcc----CCce--EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHH
Q 038663 157 VPLESSSKALNSIMKLLKD----EKVN--IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDK 227 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~L~~----~~~~--vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~ 227 (385)
..++||+.+++.|..++.. .... .+.|+|++|+|||||++.+.+.......+ ..+++..+ +...++..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA---RFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCC---EEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCe---eEEEEeCccCCCHHHHHHH
Confidence 4589999999999998864 3334 89999999999999999999887542112 45666655 57788888
Q ss_pred HHHHhcCccc--cccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCC-CC---CCeEEEEeeCChhhhh
Q 038663 228 IAELLKFKIE--EENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGE-EG---NRCKVIVTSRRLDVCS 299 (385)
Q Consensus 228 i~~~l~~~~~--~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~-~~---~gs~iivTtr~~~v~~ 299 (385)
++..++...+ ..+.......+...+...+++.+|+|||++.. ..+..+...+.. .. .+..+|++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 8888865332 22455566677777765447899999999864 233333222221 11 4677888887664322
Q ss_pred hcC--------CceEEcCCCCHHHHHHHHHHhhCC--CCCcchHHHHHHHHHHh---------CCChHHHHHHH
Q 038663 300 KMS--------DVTVQIEELGEEDRLKLFKQIARL--PDSEAFEGAAKVIVKAC---------GSLPSAIAIVA 354 (385)
Q Consensus 300 ~~~--------~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~I~~~c---------~GlPlai~~~~ 354 (385)
.+. ...+.+.|++.++..+++...+.. ....-..+..+.|++.+ +|.|..+..+.
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 221 347999999999999999987632 11122346778899999 78876554443
No 14
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.40 E-value=5.4e-13 Score=104.48 Aligned_cols=80 Identities=9% Similarity=0.142 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHhchhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhchHHHHHHHHHHHHHHHH
Q 038663 10 IVTPVASRTTDLFGNSVEEQIRYLLDYDDNLEAFRTRAGQLEARKNDVLGRVDEARDNN-EKIKEAVLLWLAKAIQIEID 88 (385)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~~l~~i~~~l~~a~~~~-~~~~~~~~~Wl~~lr~~a~d 88 (385)
+++++++|+.+.+.. ++.++.++ +++++.|++.|..|+++|.+++.+. ...++.++.|+++||+++||
T Consensus 2 ~v~~ll~KL~~ll~~----E~~l~~gv-------~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD 70 (115)
T 3qfl_A 2 AISNLIPKLGELLTE----EFKLHKGV-------KKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYV 70 (115)
T ss_dssp TTCSHHHHHHHHHHH----HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH----HHHHHhch-------HHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHH
Confidence 456667776666655 44565664 5555555566666777888888763 23589999999999999999
Q ss_pred HHHHHHHHhhcC
Q 038663 89 KEMMEEKIEKNK 100 (385)
Q Consensus 89 ~ed~id~~~~~~ 100 (385)
+||+||+|.++.
T Consensus 71 ~ED~iD~f~~~~ 82 (115)
T 3qfl_A 71 IEDVVDKFLVQV 82 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=2.1e-11 Score=113.23 Aligned_cols=184 Identities=18% Similarity=0.190 Sum_probs=112.8
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCC--HHHHHHHHHHHhc
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSD--LRRIQDKIAELLK 233 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~--~~~l~~~i~~~l~ 233 (385)
...++|++..++.|..++..+..+.+.|+|++|+|||++|+.+++...... +. ...+++..++ ....+++++..+.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~-~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-YA-DGVLELNASDDRGIDVVRNQIKHFA 97 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-HH-HHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-cc-CCEEEecCccccChHHHHHHHHHHH
Confidence 456889999999999999877666699999999999999999998864221 11 0223333221 1111111111110
Q ss_pred CccccccHHHHHHHHHHHH-HhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChhh-hh-hcC-CceEE
Q 038663 234 FKIEEENELQRRATLAKRL-RERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLDV-CS-KMS-DVTVQ 307 (385)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l-~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~v-~~-~~~-~~~~~ 307 (385)
... ..+ .+ ++.++||||++.. ..+..+...+.....++.+|+||+...- .. ... ...+.
T Consensus 98 ~~~-------------~~~~~~--~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 98 QKK-------------LHLPPG--KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HBC-------------CCCCTT--CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred hcc-------------ccCCCC--CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 000 000 22 5899999999864 2333333323223356778888765432 11 222 56899
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChH-HHHHHHHH
Q 038663 308 IEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPS-AIAIVAGA 356 (385)
Q Consensus 308 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~~~ 356 (385)
+.+++.++...++...+......-..+....|++.|+|.|. ++..+...
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999876321111223567789999999995 45554443
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=1.9e-10 Score=106.99 Aligned_cols=185 Identities=17% Similarity=0.134 Sum_probs=116.5
Q ss_pred CCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcC
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKF 234 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~ 234 (385)
.+..++|++..++.|..++..+..+.+.|+|++|+||||+|+.+++...... +. ...+.+..++....
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~-~~~~~~~~~~~~~~---------- 90 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-WR-HNFLELNASDERGI---------- 90 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HH-HHEEEEETTCHHHH----------
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-cc-CceEEeeccccCch----------
Confidence 3456899999999999999877766799999999999999999998864221 11 02233333322110
Q ss_pred ccccccHHHHHHHHHHHHHh----cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChhh-hhhc-C-Cce
Q 038663 235 KIEEENELQRRATLAKRLRE----RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLDV-CSKM-S-DVT 305 (385)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~v-~~~~-~-~~~ 305 (385)
......+...... .+++.++++||++.. ..+..+...+.....++++|+||....- ...+ . ...
T Consensus 91 -------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 91 -------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp -------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred -------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 0000111111110 016889999999864 3344443333233456788888866532 1111 1 458
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhc
Q 038663 306 VQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALR 358 (385)
Q Consensus 306 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~ 358 (385)
+.+.+++.++...++...+......-..+..+.|++.++|.|..+..+...+.
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999998774332222346677899999999997665544443
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.17 E-value=4.3e-10 Score=103.73 Aligned_cols=198 Identities=11% Similarity=0.133 Sum_probs=118.4
Q ss_pred CcchHHHHHHHHHHhc----cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCC---CCCceEEEEE-cC--CHHHHHHHH
Q 038663 159 LESSSKALNSIMKLLK----DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAP---YDKAHVIVAE-SS--DLRRIQDKI 228 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---F~~~~~~wv~-vs--~~~~l~~~i 228 (385)
+.||+++++.|...|. ++..+.+.|+|++|+|||++++.+.+....... ......+.++ .. +...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 6799999999998775 467789999999999999999999999864321 1111233333 23 777889999
Q ss_pred HHHhcCccc-cccHHHHHHHHHHHH-HhcCCcEEEEEeCCCcchhhhhhcCCC----CCCCCCeEEEEeeCChhh-----
Q 038663 229 AELLKFKIE-EENELQRRATLAKRL-RERTKKVLIILDDVREKINLAVSGIPY----GEEGNRCKVIVTSRRLDV----- 297 (385)
Q Consensus 229 ~~~l~~~~~-~~~~~~~~~~l~~~l-~~~~kr~LlVlDdv~~~~~~~~l~~~~----~~~~~gs~iivTtr~~~v----- 297 (385)
++++..... ..........+...+ ....++++++||+++.....+.+...+ ...+ ...||.++...+.
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s-~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNS-KLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSC-CEEEEEECCSSCCCHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCC-cEEEEEEecCcccchhhc
Confidence 999854211 111122222333322 112278999999997653211111111 1122 2234444433221
Q ss_pred ----hhhcCCceEEcCCCCHHHHHHHHHHhhCCC---------------------------------------CCcchHH
Q 038663 298 ----CSKMSDVTVQIEELGEEDRLKLFKQIARLP---------------------------------------DSEAFEG 334 (385)
Q Consensus 298 ----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~---------------------------------------~~~~~~~ 334 (385)
.+.+....+.+.|++.++..+++.+++... .+..++-
T Consensus 181 ~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~ 260 (318)
T 3te6_A 181 NIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQL 260 (318)
T ss_dssp HTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHH
T ss_pred chhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHH
Confidence 122223579999999999999999887210 1223445
Q ss_pred HHHHHHHHhCCChHHHHHHHHHh
Q 038663 335 AAKVIVKACGSLPSAIAIVAGAL 357 (385)
Q Consensus 335 ~~~~I~~~c~GlPlai~~~~~~L 357 (385)
+++.++..+|..-.|+..+-...
T Consensus 261 ~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 261 IAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHhhCChHHHHHHHHHHHH
Confidence 56666667888888887765443
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.13 E-value=1.4e-09 Score=100.72 Aligned_cols=183 Identities=13% Similarity=0.149 Sum_probs=112.9
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCc
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFK 235 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~ 235 (385)
..+++|++..++.|.+++..+..+.+.|+|++|+|||++|+.+.+...... +. ...+.+..++..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~-~~~~~~~~~~~~------------- 80 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-WR-DNFIEMNASDER------------- 80 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-HH-HHCEEEETTSTT-------------
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-cc-CCeEEEeCcccc-------------
Confidence 456889999999999998877666699999999999999999998863211 11 011222222100
Q ss_pred cccccHHHHHHHHHHH--HHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChh-hh-hhcC-CceEEc
Q 038663 236 IEEENELQRRATLAKR--LRERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLD-VC-SKMS-DVTVQI 308 (385)
Q Consensus 236 ~~~~~~~~~~~~l~~~--l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~-v~-~~~~-~~~~~l 308 (385)
...........+... +.. +++.++||||++.. .....+...+.....++++|+||.... +. .... ...+.+
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~-~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~ 158 (319)
T 2chq_A 81 -GIDVVRHKIKEFARTAPIGG-APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (319)
T ss_dssp -CTTTSSHHHHHHHHSCCSSS-CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEEC
T ss_pred -ChHHHHHHHHHHHhcCCCCC-CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEe
Confidence 000000000111100 111 26889999999754 334445444444445778888876544 21 1222 568999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 038663 309 EELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAG 355 (385)
Q Consensus 309 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~ 355 (385)
.+++.++...++...+......-..+....|+..++|.|..+..+..
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 159 KPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999998774331122345677888999999986555443
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.07 E-value=2.3e-09 Score=101.62 Aligned_cols=194 Identities=12% Similarity=0.124 Sum_probs=111.2
Q ss_pred CCCCcchHHHHHHHHHHhccCC-ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcC
Q 038663 156 YVPLESSSKALNSIMKLLKDEK-VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKF 234 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~ 234 (385)
..+++|++..++.|...+..+. ...+.|+|++|+||||+|+.+.+.......+. . ....... -...+......
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~--~---~~~~~~~-~~~~~~~~~~~ 88 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT--A---TPCGVCD-NCREIEQGRFV 88 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC--S---SCCSSSH-HHHHHHTSCCS
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC--C---CCCcccH-HHHHHhccCCC
Confidence 4468999999999999887654 35689999999999999999998865322111 0 0000000 00111100000
Q ss_pred c-----cccccHHHHHHHHHHHHHh---cCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChh-h-hhhcC
Q 038663 235 K-----IEEENELQRRATLAKRLRE---RTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLD-V-CSKMS 302 (385)
Q Consensus 235 ~-----~~~~~~~~~~~~l~~~l~~---~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~-v-~~~~~ 302 (385)
. ............+.+.+.. .+++.++||||++.. ..+..+...+.....++.+|++|.... + .....
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 168 (373)
T 1jr3_A 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 (373)
T ss_dssp SCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHT
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHh
Confidence 0 0000000011222222221 126789999999754 333444333323334667777775443 2 12222
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 038663 303 -DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAG 355 (385)
Q Consensus 303 -~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~ 355 (385)
...+++.+++.++...++.+.+......-..+....|++.++|.|..+..+..
T Consensus 169 r~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 169 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred heeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 67899999999999999987762211112235667899999999998876553
No 20
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.04 E-value=3.3e-10 Score=100.38 Aligned_cols=172 Identities=16% Similarity=0.205 Sum_probs=103.5
Q ss_pred CCCCcch---HHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHh
Q 038663 156 YVPLESS---SKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELL 232 (385)
Q Consensus 156 ~~~~~gr---~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l 232 (385)
+..|++. ...++.+..+......+.+.|+|++|+||||||+.+++..... .+ ...++..++....+..++
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~---~~~~~~~~~~~~~~~~~~--- 99 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-ER---RSFYIPLGIHASISTALL--- 99 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-TC---CEEEEEGGGGGGSCGGGG---
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC---eEEEEEHHHHHHHHHHHH---
Confidence 3445552 3566667666665567889999999999999999999987643 22 455666553211100000
Q ss_pred cCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh----hhhhcCCCCC--CCCCeEEEEeeCChh---------h
Q 038663 233 KFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKIN----LAVSGIPYGE--EGNRCKVIVTSRRLD---------V 297 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~----~~~l~~~~~~--~~~gs~iivTtr~~~---------v 297 (385)
+.+ . +..+|+|||++.... ...+...+.. .....++|+||+... +
T Consensus 100 -----------------~~~-~--~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 100 -----------------EGL-E--QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp -----------------TTG-G--GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred -----------------Hhc-c--CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 011 2 577999999975421 1222111100 111224777776432 1
Q ss_pred hhhcC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 298 CSKMS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 298 ~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
...+. ...+.+.+++.++..+++...+......-..+..+.|++.|+|.+-.+..+.
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 11111 3789999999999999999877322112234667789999999998776543
No 21
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.00 E-value=3.7e-09 Score=98.23 Aligned_cols=176 Identities=17% Similarity=0.159 Sum_probs=107.8
Q ss_pred CCCCCcchHHHHHHHHHHhcc-----CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHH
Q 038663 155 DYVPLESSSKALNSIMKLLKD-----EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIA 229 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~ 229 (385)
.+..++|++..+..+..++.. .....+.|+|++|+|||+||+.+++.... ...++..+...
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-------~~~~~~~~~~~------- 75 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-------NLRVTSGPAIE------- 75 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-------CEEEECTTTCC-------
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEeccccC-------
Confidence 345689999988888887752 34467899999999999999999987641 22233333110
Q ss_pred HHhcCccccccHHHHHHHHHHHHHh-cCCcEEEEEeCCCcch--hhhhhcCCCC--------C----------CCCCeEE
Q 038663 230 ELLKFKIEEENELQRRATLAKRLRE-RTKKVLIILDDVREKI--NLAVSGIPYG--------E----------EGNRCKV 288 (385)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~l~~~l~~-~~kr~LlVlDdv~~~~--~~~~l~~~~~--------~----------~~~gs~i 288 (385)
... .+...+.+ ..+..+|+|||+.... ....+...+. . ...+..+
T Consensus 76 ----------~~~----~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 76 ----------KPG----DLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp ----------SHH----HHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ----------ChH----HHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 001 11112222 1256789999987542 1111111000 0 0123456
Q ss_pred EEeeCChh-hhhh-cC--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHhc
Q 038663 289 IVTSRRLD-VCSK-MS--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAGALR 358 (385)
Q Consensus 289 ivTtr~~~-v~~~-~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~L~ 358 (385)
|.||.... +... .. ...+.+.+++.++...++.+.+......-..+..+.|++.|+|.|-.+..+...+.
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 66665443 2221 12 36899999999999999988874331122346778899999999998887766553
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.98 E-value=6e-08 Score=88.35 Aligned_cols=201 Identities=18% Similarity=0.222 Sum_probs=116.2
Q ss_pred CCCCCCCcchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC
Q 038663 153 TPDYVPLESSSKALNSIMKLLKD-------------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS 219 (385)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs 219 (385)
...+.+++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.... ..+.+..+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-------~~~~v~~~ 85 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-------TFIRVVGS 85 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-------EEEEEEGG
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEehH
Confidence 34456688999999998887742 34567999999999999999999987642 12222222
Q ss_pred CHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------------hhhhhcCCCC--C
Q 038663 220 DLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPYG--E 281 (385)
Q Consensus 220 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~ 281 (385)
+. ...... ........+....... .+.+|+|||++... .+..+...+. .
T Consensus 86 ~~-----------~~~~~~-~~~~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 86 EL-----------VKKFIG-EGASLVKDIFKLAKEK-APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp GG-----------CCCSTT-HHHHHHHHHHHHHHHT-CSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred HH-----------HHhccc-hHHHHHHHHHHHHHHc-CCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 11 000011 1111222233333331 67899999996531 1111111110 1
Q ss_pred CCCCeEEEEeeCChhhhh---hc--C-CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCC-hHHHH
Q 038663 282 EGNRCKVIVTSRRLDVCS---KM--S-DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSL-PSAIA 351 (385)
Q Consensus 282 ~~~gs~iivTtr~~~v~~---~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~Gl-Plai~ 351 (385)
...+..||.||....... .. . ...+.+++.+.++..+++...+... .... ...|+..+.|+ |-.+.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 234677888887654311 11 2 4679999999999999999887543 2222 35577888874 53444
Q ss_pred HHH------HHhcCCCCCCcchhhhhhHHHHHHHHHh
Q 038663 352 IVA------GALRGKLANESNESLVNIWNDAVEEVIR 382 (385)
Q Consensus 352 ~~~------~~L~~~~~~~~~~~~~~~W~~~~~~l~~ 382 (385)
.+. ...+... .++.+..+.+++.+..
T Consensus 229 ~l~~~a~~~a~~~~~~-----~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 229 AICTEAGMNAIRELRD-----YVTMDDFRKAVEKIME 260 (285)
T ss_dssp HHHHHHHHHHHHTTCS-----SBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-----cCCHHHHHHHHHHHHh
Confidence 332 2222222 1267888888776643
No 23
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.98 E-value=2.6e-09 Score=90.77 Aligned_cols=154 Identities=14% Similarity=0.153 Sum_probs=87.9
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCC---CCCceEEEEEcCCHHHHHHHHHHHh
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAP---YDKAHVIVAESSDLRRIQDKIAELL 232 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---F~~~~~~wv~vs~~~~l~~~i~~~l 232 (385)
...++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++....... +.....+++..+ .+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------- 90 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG---ALV------- 90 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH---HHH-------
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH---HHh-------
Confidence 4568999999999999998776778899999999999999999998653210 011133333322 111
Q ss_pred cCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch---------hhhhhcCCCCCCCCCeEEEEeeCChhhh-----
Q 038663 233 KFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI---------NLAVSGIPYGEEGNRCKVIVTSRRLDVC----- 298 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtr~~~v~----- 298 (385)
...............+.+.+....++.+|+|||++... .+..+...+.. ..+..+|.||......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~ 169 (195)
T 1jbk_A 91 AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQYIEK 169 (195)
T ss_dssp TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHHHTTT
T ss_pred ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHHHHHhc
Confidence 00000011111222333333222368899999997642 11111111111 1245577777665421
Q ss_pred --hhcC-CceEEcCCCCHHHHHHHH
Q 038663 299 --SKMS-DVTVQIEELGEEDRLKLF 320 (385)
Q Consensus 299 --~~~~-~~~~~l~~L~~~~~~~lf 320 (385)
.... ...+.+.+++.++..+++
T Consensus 170 ~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 170 DAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CHHHHHHhceeecCCCCHHHHHHHh
Confidence 1122 346899999998877654
No 24
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.97 E-value=6.2e-08 Score=87.77 Aligned_cols=193 Identities=12% Similarity=0.206 Sum_probs=107.3
Q ss_pred CcchHHHHHHHHH-------Hhc---cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHH
Q 038663 159 LESSSKALNSIMK-------LLK---DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKI 228 (385)
Q Consensus 159 ~~gr~~~~~~l~~-------~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i 228 (385)
++|....++.+.. .+. ....+.+.|+|++|+|||+||+.+++... .. .....+....
T Consensus 35 ~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~----~~--~~~i~~~~~~------- 101 (272)
T 1d2n_A 35 IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN----FP--FIKICSPDKM------- 101 (272)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT----CS--EEEEECGGGC-------
T ss_pred CCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC----CC--EEEEeCHHHh-------
Confidence 5555555444444 332 34567899999999999999999999754 22 2222221100
Q ss_pred HHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc---------------hhhhhhcCCCCCCCCCeEEEEeeC
Q 038663 229 AELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK---------------INLAVSGIPYGEEGNRCKVIVTSR 293 (385)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~---------------~~~~~l~~~~~~~~~gs~iivTtr 293 (385)
.+ .............+...... +..+|+|||+... ..+..+.........+..||.||.
T Consensus 102 ---~g-~~~~~~~~~~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn 175 (272)
T 1d2n_A 102 ---IG-FSETAKCQAMKKIFDDAYKS--QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTS 175 (272)
T ss_dssp ---TT-CCHHHHHHHHHHHHHHHHTS--SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEES
T ss_pred ---cC-CchHHHHHHHHHHHHHHHhc--CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecC
Confidence 00 00000001111222222233 6889999998653 112222222222334556788887
Q ss_pred Chhhhhh---cC--CceEEcCCCCH-HHHHHHHHHhhCCCCCcchHHHHHHHHHHhCC------ChHHHHHHHHHhcCCC
Q 038663 294 RLDVCSK---MS--DVTVQIEELGE-EDRLKLFKQIARLPDSEAFEGAAKVIVKACGS------LPSAIAIVAGALRGKL 361 (385)
Q Consensus 294 ~~~v~~~---~~--~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~G------lPlai~~~~~~L~~~~ 361 (385)
....... .+ ...+.+++++. ++...++.+.... ..+....|++.+.| ++-++..+-..-. ..
T Consensus 176 ~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~~-----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-~~ 249 (272)
T 1d2n_A 176 RKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNF-----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-MD 249 (272)
T ss_dssp CHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTCS-----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-SC
T ss_pred ChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCCC-----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-hc
Confidence 7654332 22 57789999998 7777776654321 13556778888888 4454444444333 22
Q ss_pred CCCcchhhhhhHHHHHHHHHhh
Q 038663 362 ANESNESLVNIWNDAVEEVIRE 383 (385)
Q Consensus 362 ~~~~~~~~~~~W~~~~~~l~~~ 383 (385)
....|+.++..++.+
T Consensus 250 -------~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 250 -------PEYRVRKFLALLREE 264 (272)
T ss_dssp -------GGGHHHHHHHHHHHT
T ss_pred -------hHHHHHHHHHHHHHc
Confidence 367888888887765
No 25
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.94 E-value=1e-07 Score=85.60 Aligned_cols=208 Identities=13% Similarity=0.149 Sum_probs=110.7
Q ss_pred CCCCCcchHHHHHHHHHHhc---c---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHH
Q 038663 155 DYVPLESSSKALNSIMKLLK---D---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLR 222 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~ 222 (385)
.+..++|.+..++.|.+.+. . ...+.+.|+|++|+|||+||+.+++.... ..+.+..++..
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~~~~~~~~ 76 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-------PFLAMAGAEFV 76 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------CEEEEETTTTS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEechHHHH
Confidence 34557788777666655432 1 23456889999999999999999997642 12233333211
Q ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-----------------hhhhhcCCCC--CCC
Q 038663 223 RIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI-----------------NLAVSGIPYG--EEG 283 (385)
Q Consensus 223 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-----------------~~~~l~~~~~--~~~ 283 (385)
. .............+...... .+.+|+|||++... .+..+...+. ...
T Consensus 77 ~-----------~~~~~~~~~~~~~~~~a~~~--~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 77 E-----------VIGGLGAARVRSLFKEARAR--APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp S-----------SSTTHHHHHHHHHHHHHHHT--CSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred h-----------hccChhHHHHHHHHHHHHhc--CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 0 00111111122222222233 67999999997531 1111111111 112
Q ss_pred CCeEEEEeeCChhhh---hhc--C-CceEEcCCCCHHHHHHHHHHhhCCC-CCcchHHHHHHHHHHhCCChH-HHHHHHH
Q 038663 284 NRCKVIVTSRRLDVC---SKM--S-DVTVQIEELGEEDRLKLFKQIARLP-DSEAFEGAAKVIVKACGSLPS-AIAIVAG 355 (385)
Q Consensus 284 ~gs~iivTtr~~~v~---~~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~I~~~c~GlPl-ai~~~~~ 355 (385)
.+..+|.||...... -.. . ...+.+++.+.++..+++...+... ...........+++.+.|++- .|..+..
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 356777777655421 111 2 5678899999999999998877322 222222334778899999865 5544433
Q ss_pred HhcCCCC-CCcchhhhhhHHHHHHHHHh
Q 038663 356 ALRGKLA-NESNESLVNIWNDAVEEVIR 382 (385)
Q Consensus 356 ~L~~~~~-~~~~~~~~~~W~~~~~~l~~ 382 (385)
....... .....++.+.++.+++.+..
T Consensus 224 ~a~~~a~~~~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 224 EAALHAAREGHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp HHHTC--------CCBCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhcc
Confidence 2211110 00112356777877776643
No 26
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.90 E-value=1.8e-07 Score=86.94 Aligned_cols=182 Identities=17% Similarity=0.132 Sum_probs=107.5
Q ss_pred CCCCCCCCcchHHHHHHHHHHhc------------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC
Q 038663 152 ATPDYVPLESSSKALNSIMKLLK------------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS 219 (385)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs 219 (385)
|...+..++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.... .| +.++.+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~--~~-----~~v~~~ 85 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS--TF-----FSVSSS 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC--EE-----EEEEHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC--CE-----EEEchH
Confidence 34445678899999888888772 112467999999999999999999987642 12 222221
Q ss_pred CHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh-------------hhhhc---CCCCCCC
Q 038663 220 DLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSG---IPYGEEG 283 (385)
Q Consensus 220 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~-------------~~~l~---~~~~~~~ 283 (385)
+ +.. .... ........+....... ++.+|+|||+..... ...+. ..+....
T Consensus 86 ~---l~~--------~~~g-~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 86 D---LVS--------KWMG-ESEKLVKQLFAMAREN-KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp H---HHT--------TTGG-GHHHHHHHHHHHHHHT-SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred H---Hhh--------cccc-hHHHHHHHHHHHHHhc-CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 1 110 1111 1222233333333332 678999999974311 11111 1111233
Q ss_pred CCeEEEEeeCChhhh-hh-c-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCC-hHHHHHH
Q 038663 284 NRCKVIVTSRRLDVC-SK-M-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL-PSAIAIV 353 (385)
Q Consensus 284 ~gs~iivTtr~~~v~-~~-~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~~ 353 (385)
.+..||.||...... .. . . ...+.+...+.++-.+++...++.............|++.+.|+ +-.|..+
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 466777777654321 11 1 2 56788999999999999999886542222235567788999884 4344433
No 27
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.88 E-value=2.4e-07 Score=86.02 Aligned_cols=181 Identities=19% Similarity=0.166 Sum_probs=103.8
Q ss_pred CCCCCCcchHHHHHHHHHHhc------------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCH
Q 038663 154 PDYVPLESSSKALNSIMKLLK------------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDL 221 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~ 221 (385)
....++.|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++..... ..+.+..++.
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~------~~~~i~~~~l 82 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS------TFFSISSSDL 82 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC------EEEEEECCSS
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC------cEEEEEhHHH
Confidence 344567788887777776552 1234689999999999999999999986311 2222333311
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh-------------hhhhcC---CCCCCCCC
Q 038663 222 RRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSGI---PYGEEGNR 285 (385)
Q Consensus 222 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~-------------~~~l~~---~~~~~~~g 285 (385)
. ........ .....+.+..... ++.+|+|||+..... ...+.. .+.....+
T Consensus 83 ~-----------~~~~g~~~-~~~~~lf~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 83 V-----------SKWLGESE-KLVKNLFQLAREN-KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp C-----------CSSCCSCH-HHHHHHHHHHHHT-SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred H-----------hhhhhHHH-HHHHHHHHHHHhc-CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 0 00111111 1222333333322 788999999975410 011111 11112345
Q ss_pred eEEEEeeCChhh-hhh--cC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCCh-HHHHHH
Q 038663 286 CKVIVTSRRLDV-CSK--MS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP-SAIAIV 353 (385)
Q Consensus 286 s~iivTtr~~~v-~~~--~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~ 353 (385)
..||.||..... ... .. ...+.+.+.+.++..+++...+..............|++.+.|+. -.|..+
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 667767755432 111 13 578899999999999999988754321112355677999999984 334444
No 28
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.87 E-value=2.9e-08 Score=96.27 Aligned_cols=176 Identities=13% Similarity=0.154 Sum_probs=107.5
Q ss_pred CCCCCCcchHHHH---HHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHHH
Q 038663 154 PDYVPLESSSKAL---NSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDKI 228 (385)
Q Consensus 154 ~~~~~~~gr~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~i 228 (385)
..+..++|.+..+ ..|...+..+....+.|+|++|+||||||+.+.+.... .|. .+... ....+ +.+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~--~f~-----~l~a~~~~~~~i-r~~ 94 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA--DVE-----RISAVTSGVKEI-REA 94 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC--EEE-----EEETTTCCHHHH-HHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC--CeE-----EEEeccCCHHHH-HHH
Confidence 3456688998888 77888888777788999999999999999999998642 122 12222 22221 111
Q ss_pred HHHhcCccccccHHHHHHHHHHH-HHhcCCcEEEEEeCCCcch--hhhhhcCCCCCCCCCeEEEEeeCChh--h-hhhcC
Q 038663 229 AELLKFKIEEENELQRRATLAKR-LRERTKKVLIILDDVREKI--NLAVSGIPYGEEGNRCKVIVTSRRLD--V-CSKMS 302 (385)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~l~~~-l~~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtr~~~--v-~~~~~ 302 (385)
+. ..... ..+ ++.+|+|||++... ..+.+...+. .+.-.-|..||.+.. + .....
T Consensus 95 ~~----------------~a~~~~~~~--~~~iLfIDEI~~l~~~~q~~LL~~le-~~~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 95 IE----------------RARQNRNAG--RRTILFVDEVHRFNKSQQDAFLPHIE-DGTITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp HH----------------HHHHHHHTT--CCEEEEEETTTCC------CCHHHHH-TTSCEEEEEESSCGGGSSCHHHHT
T ss_pred HH----------------HHHHhhhcC--CCcEEEEeChhhhCHHHHHHHHHHHh-cCceEEEecCCCCcccccCHHHhC
Confidence 11 11111 123 78999999997542 2333322222 222233344555543 1 22223
Q ss_pred -CceEEcCCCCHHHHHHHHHHhhCC-------CCCcchHHHHHHHHHHhCCChHHHHHHHHH
Q 038663 303 -DVTVQIEELGEEDRLKLFKQIARL-------PDSEAFEGAAKVIVKACGSLPSAIAIVAGA 356 (385)
Q Consensus 303 -~~~~~l~~L~~~~~~~lf~~~~~~-------~~~~~~~~~~~~I~~~c~GlPlai~~~~~~ 356 (385)
..++.+.+++.++...++.+.+.. ....-..+..+.|++.++|.+-.+..+...
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 568899999999999999987732 111223467778888899988766655433
No 29
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.87 E-value=2.8e-08 Score=92.94 Aligned_cols=173 Identities=14% Similarity=0.177 Sum_probs=105.0
Q ss_pred CCCCCcchHHHHHHHHHHhcc-----CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHH
Q 038663 155 DYVPLESSSKALNSIMKLLKD-----EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIA 229 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~ 229 (385)
.+..++|++..++.+..++.. .....+.|+|++|+|||+||+.+.+.... .|. .+..+...
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~--~~~-----~~~~~~~~------- 92 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA--NIK-----TTAAPMIE------- 92 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC--CEE-----EEEGGGCC-------
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC--CeE-----Eecchhcc-------
Confidence 455689999999988888752 44567899999999999999999887541 121 22222000
Q ss_pred HHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch--hhhhhcCCCCC------------------CCCCeEEE
Q 038663 230 ELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGIPYGE------------------EGNRCKVI 289 (385)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~--~~~~l~~~~~~------------------~~~gs~ii 289 (385)
. ...+...+....+..+|+|||+.... ....+...+.. ..++..+|
T Consensus 93 ----------~----~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 93 ----------K----SGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp ----------S----HHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred ----------c----hhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 0 01122222222267889999987541 11111111100 11135666
Q ss_pred EeeCChhh-h-hhcC--CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHHH
Q 038663 290 VTSRRLDV-C-SKMS--DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVAG 355 (385)
Q Consensus 290 vTtr~~~v-~-~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~ 355 (385)
.+|..... . .... ...+.+.+++.++...++.+.+.........+..+.|++.+.|.|-.+..+..
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 66665432 1 1122 47899999999999999998774332223346677888999999965554443
No 30
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=3.5e-08 Score=92.68 Aligned_cols=191 Identities=12% Similarity=0.119 Sum_probs=110.7
Q ss_pred CCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhh--CCCCCceEEEEEcCC--HHHHHHHHHH
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTI--APYDKAHVIVAESSD--LRRIQDKIAE 230 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~~~~~wv~vs~--~~~l~~~i~~ 230 (385)
....++|++..++.|..++..+....+.|+|++|+||||+|+.+.+..... ..+. ...+..++ ....+.+...
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 111 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR---ILELNASDERGISIVREKVK 111 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS---EEEECSSSCCCHHHHTTHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc---eEEEccccccchHHHHHHHH
Confidence 345688999999999999987765669999999999999999999886421 1122 22233331 1111221111
Q ss_pred HhcC-ccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChh-hhhhc-C-Cc
Q 038663 231 LLKF-KIEEENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLD-VCSKM-S-DV 304 (385)
Q Consensus 231 ~l~~-~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~~-~-~~ 304 (385)
.+.. ........ ........+.-+|++|++... .....+...+......+++|++|.... +...+ . ..
T Consensus 112 ~~~~~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 112 NFARLTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHHSCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHhhhcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 1110 00000000 000111114569999998754 222333222222234566777665433 22222 2 56
Q ss_pred eEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHHH
Q 038663 305 TVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIVA 354 (385)
Q Consensus 305 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 354 (385)
.+.+.+++.++....+.+.+......-..+..+.|++.++|.|-.+..+.
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 89999999999999999876332112224677889999999998755443
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.86 E-value=2.5e-07 Score=87.19 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=104.1
Q ss_pred CCCCCcchHHHHHHHHHHhc------------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHH
Q 038663 155 DYVPLESSSKALNSIMKLLK------------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLR 222 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~ 222 (385)
....++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.... ..+.+..++..
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~i~~~~l~ 154 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-------TFFSISASSLT 154 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-------EEEEEEGGGGC
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-------eEEEEehHHhh
Confidence 34568899998888888763 234578999999999999999999987641 22333333110
Q ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-------------hhhhhcCCC----CCCCCC
Q 038663 223 RIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI-------------NLAVSGIPY----GEEGNR 285 (385)
Q Consensus 223 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-------------~~~~l~~~~----~~~~~g 285 (385)
..... ........+....... ++.+|+|||+.... ....+...+ .....+
T Consensus 155 -----------~~~~g-~~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 155 -----------SKWVG-EGEKMVRALFAVARCQ-QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp -----------CSSTT-HHHHHHHHHHHHHHHT-CSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred -----------ccccc-hHHHHHHHHHHHHHhc-CCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00000 1111222233333321 67999999995320 111111111 112235
Q ss_pred eEEEEeeCChh-hh-hhc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCC-ChHHHHHHH
Q 038663 286 CKVIVTSRRLD-VC-SKM-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGS-LPSAIAIVA 354 (385)
Q Consensus 286 s~iivTtr~~~-v~-~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~G-lPlai~~~~ 354 (385)
..||.||.... +. ... . ...+.+...+.++..+++...+......-.......|++.+.| .+-.+..+.
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56776776543 21 111 2 5678899999999999998877332111223567779999999 455555554
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.85 E-value=1.9e-08 Score=92.76 Aligned_cols=151 Identities=10% Similarity=0.064 Sum_probs=87.2
Q ss_pred CcchHHHHHHHHHHhc---------------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHH
Q 038663 159 LESSSKALNSIMKLLK---------------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRR 223 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~ 223 (385)
++|.+..++.|.+.+. ......+.|+|++|+|||+||+.+++......... ..-++.++ ..
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~--~~~~~~~~-~~- 108 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVR--KGHLVSVT-RD- 108 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSS--SCCEEEEC-GG-
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcC--CCcEEEEc-HH-
Confidence 6677777776665543 23445799999999999999999998876433322 11222332 00
Q ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc-----------hhhhhhcCCCCCCCCCeEEEEee
Q 038663 224 IQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK-----------INLAVSGIPYGEEGNRCKVIVTS 292 (385)
Q Consensus 224 l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTt 292 (385)
.+.......... .+...+... +..+|+|||++.. .....+...+.....+..+|+||
T Consensus 109 -------~l~~~~~g~~~~----~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 109 -------DLVGQYIGHTAP----KTKEVLKRA-MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp -------GTCCSSTTCHHH----HHHHHHHHH-TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred -------HhhhhcccccHH----HHHHHHHhc-CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 001111111111 122222221 4569999999733 22233333332334466788888
Q ss_pred CChhh-------hhhcC--CceEEcCCCCHHHHHHHHHHhhC
Q 038663 293 RRLDV-------CSKMS--DVTVQIEELGEEDRLKLFKQIAR 325 (385)
Q Consensus 293 r~~~v-------~~~~~--~~~~~l~~L~~~~~~~lf~~~~~ 325 (385)
..... ..... ...+.+++++.++...++.+.+.
T Consensus 177 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 65432 11111 47899999999999999988773
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.84 E-value=6.1e-08 Score=91.68 Aligned_cols=214 Identities=14% Similarity=0.142 Sum_probs=112.3
Q ss_pred CCCCcchHHHHHH---HHHHhccCC--ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC------CHHHH
Q 038663 156 YVPLESSSKALNS---IMKLLKDEK--VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS------DLRRI 224 (385)
Q Consensus 156 ~~~~~gr~~~~~~---l~~~L~~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs------~~~~l 224 (385)
+..++|++..++. +.+.+.... .+.+.|+|++|+|||+||+.+.+.......|. ...+.. ...+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~----~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT----AIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE----EEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc----cccchhhhhcccchhHH
Confidence 4568999887665 444444443 35899999999999999999999876321221 111111 33333
Q ss_pred HHHHHHHhcC-c--------------------------c--c-----cccHHHHHHHHHHHHHhcCC----cEEEEEeCC
Q 038663 225 QDKIAELLKF-K--------------------------I--E-----EENELQRRATLAKRLRERTK----KVLIILDDV 266 (385)
Q Consensus 225 ~~~i~~~l~~-~--------------------------~--~-----~~~~~~~~~~l~~~l~~~~k----r~LlVlDdv 266 (385)
+.+.+..... . . . ..................++ +.+|+|||+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 3333332110 0 0 0 00011111111221111113 359999999
Q ss_pred Ccc--hhhhhhcCCCCCCCCCeEEEEeeCC-------------hhh-hhhcC-CceEEcCCCCHHHHHHHHHHhhCCCCC
Q 038663 267 REK--INLAVSGIPYGEEGNRCKVIVTSRR-------------LDV-CSKMS-DVTVQIEELGEEDRLKLFKQIARLPDS 329 (385)
Q Consensus 267 ~~~--~~~~~l~~~~~~~~~gs~iivTtr~-------------~~v-~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~ 329 (385)
... .....+...+....... ++++|.. ..+ ..... ...+.+.+++.++..+++.+.+.....
T Consensus 199 ~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 199 HMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp GGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred cccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 754 23333333332222233 4434431 111 11122 456899999999999999987743222
Q ss_pred cchHHHHHHHHHHhC-CChHHHHHHHHH------hcCCCCCCcchhhhhhHHHHHHH
Q 038663 330 EAFEGAAKVIVKACG-SLPSAIAIVAGA------LRGKLANESNESLVNIWNDAVEE 379 (385)
Q Consensus 330 ~~~~~~~~~I~~~c~-GlPlai~~~~~~------L~~~~~~~~~~~~~~~W~~~~~~ 379 (385)
.-..+..+.|++.+. |.|-.+..+... ..... .++.+..+.+++.
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~-----~It~~~v~~a~~~ 329 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGT-----EVQVDDIKRVYSL 329 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCS-----SBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHH
Confidence 233467778999997 777655443322 11222 2256677766654
No 34
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=3.7e-08 Score=92.63 Aligned_cols=193 Identities=12% Similarity=0.103 Sum_probs=105.5
Q ss_pred CCCCcchHHHHHHHHHHh-ccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCC----CCC------------------ce
Q 038663 156 YVPLESSSKALNSIMKLL-KDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAP----YDK------------------AH 212 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~------------------~~ 212 (385)
+..++|++..++.+.+++ ..+....+.|+|++|+||||+++.+....-.... +++ ..
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccc
Confidence 456889999999999988 6665555999999999999999999986421100 000 00
Q ss_pred EEEEEcCC----HHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch--hhhhhcCCCCCCCCCe
Q 038663 213 VIVAESSD----LRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGIPYGEEGNRC 286 (385)
Q Consensus 213 ~~wv~vs~----~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs 286 (385)
.+.+..++ .....++++..+........ .. .+ ..+.. ++-+++||++.... ....+...+.....++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~-~l-s~l~~--~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 93 HLEITPSDMGNNDRIVIQELLKEVAQMEQVDF---QD-SK-DGLAH--RYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp EEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred eEEecHhhcCCcchHHHHHHHHHHHHhccccc---cc-cc-cccCC--CCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 01111110 00012222222211000000 00 00 00123 66799999997532 2222222221122356
Q ss_pred EEEEeeCChh-hhh-hcC-CceEEcCCCCHHHHHHHHHHhhCCCCCcch-HHHHHHHHHHhCCChHHHHHHHH
Q 038663 287 KVIVTSRRLD-VCS-KMS-DVTVQIEELGEEDRLKLFKQIARLPDSEAF-EGAAKVIVKACGSLPSAIAIVAG 355 (385)
Q Consensus 287 ~iivTtr~~~-v~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~-~~~~~~I~~~c~GlPlai~~~~~ 355 (385)
.+|++|.... +.. ... ...+++.+++.++....+.+.+......-. .+....|++.++|.+-.+..+..
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7777776533 322 223 678999999999999999987622111111 25667789999999876655543
No 35
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=1.4e-08 Score=100.75 Aligned_cols=186 Identities=11% Similarity=0.133 Sum_probs=106.3
Q ss_pred CCCCCcchHHHHHHHHHHhcc-----------------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEE
Q 038663 155 DYVPLESSSKALNSIMKLLKD-----------------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAE 217 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~ 217 (385)
.+..++|++..++.|.+++.. +..+.+.|+|++|+||||+|+.+++... + ..+.+.
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~---~~i~in 109 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y---DILEQN 109 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C---EEEEEC
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C---CEEEEe
Confidence 455689999999999999864 1347899999999999999999999873 3 233444
Q ss_pred cC--CHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh-----hhhhcCCCCCCCCCeEEEE
Q 038663 218 SS--DLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKIN-----LAVSGIPYGEEGNRCKVIV 290 (385)
Q Consensus 218 vs--~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~iiv 290 (385)
.+ ....++...+...... .+.........+.+....++.+|+|||++.... +..+...+. . .+..||+
T Consensus 110 ~s~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~-~-~~~~iIl 184 (516)
T 1sxj_A 110 ASDVRSKTLLNAGVKNALDN---MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR-K-TSTPLIL 184 (516)
T ss_dssp TTSCCCHHHHHHTGGGGTTB---CCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH-H-CSSCEEE
T ss_pred CCCcchHHHHHHHHHHHhcc---ccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH-h-cCCCEEE
Confidence 44 2222322222211110 000000000000111112788999999975421 122211111 1 1233555
Q ss_pred eeCChh---hhhhcC-CceEEcCCCCHHHHHHHHHHhh---CCCCCcchHHHHHHHHHHhCC-ChHHHHHHHH
Q 038663 291 TSRRLD---VCSKMS-DVTVQIEELGEEDRLKLFKQIA---RLPDSEAFEGAAKVIVKACGS-LPSAIAIVAG 355 (385)
Q Consensus 291 Ttr~~~---v~~~~~-~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~~~~I~~~c~G-lPlai~~~~~ 355 (385)
++.... +..... ...+.+.+++.++..+++...+ |...++ +....|++.|+| ++.++..+..
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 554322 233333 6789999999999999998876 333222 346678899999 5555555543
No 36
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.80 E-value=2.4e-08 Score=96.88 Aligned_cols=201 Identities=14% Similarity=0.165 Sum_probs=114.7
Q ss_pred CCCCc-chH--HHHHHHHHHhccCC-ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHH
Q 038663 156 YVPLE-SSS--KALNSIMKLLKDEK-VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAEL 231 (385)
Q Consensus 156 ~~~~~-gr~--~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~ 231 (385)
+..|+ |.. .....+........ ...+.|+|++|+||||||+.+++..... +.+...++++.+. +...+...
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~--~~~~~v~~v~~~~---~~~~~~~~ 178 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN--EPDLRVMYITSEK---FLNDLVDS 178 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH--CCSSCEEEEEHHH---HHHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh--CCCCeEEEeeHHH---HHHHHHHH
Confidence 33455 432 23344444444333 6789999999999999999999987543 3211334444332 23333333
Q ss_pred hcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----hhhhhcCCCCC-CCCCeEEEEeeCChh---------h
Q 038663 232 LKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----NLAVSGIPYGE-EGNRCKVIVTSRRLD---------V 297 (385)
Q Consensus 232 l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~iivTtr~~~---------v 297 (385)
+... . ...+.+.+.. +.-+|+|||++... ....+...+.. ...|..||+||.... +
T Consensus 179 ~~~~----~----~~~~~~~~~~--~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 179 MKEG----K----LNEFREKYRK--KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHTT----C----HHHHHHHHTT--TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHcc----c----HHHHHHHhcC--CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 3211 1 1223334443 57799999997542 12222222111 124667888887632 1
Q ss_pred hhhcC-CceEEcCCCCHHHHHHHHHHhh---CCCCCcchHHHHHHHHHHhCCChHHHHHHHHH------hcCCCCCCcch
Q 038663 298 CSKMS-DVTVQIEELGEEDRLKLFKQIA---RLPDSEAFEGAAKVIVKACGSLPSAIAIVAGA------LRGKLANESNE 367 (385)
Q Consensus 298 ~~~~~-~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~------L~~~~~~~~~~ 367 (385)
.+.+. ...+.+++++.++..+++.+.+ +...++ ++...|+..++|.+-.+.-+... +.++.
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~------ 319 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKE------ 319 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSC------
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCC------
Confidence 22222 4688999999999999999877 332222 44667888999988655433221 12222
Q ss_pred hhhhhHHHHHHHH
Q 038663 368 SLVNIWNDAVEEV 380 (385)
Q Consensus 368 ~~~~~W~~~~~~l 380 (385)
++.+.++.++..+
T Consensus 320 It~~~~~~~l~~~ 332 (440)
T 2z4s_A 320 VDLKEAILLLKDF 332 (440)
T ss_dssp CCHHHHHHHTSTT
T ss_pred CCHHHHHHHHHHH
Confidence 2577777776543
No 37
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.79 E-value=3.5e-07 Score=86.15 Aligned_cols=179 Identities=18% Similarity=0.155 Sum_probs=101.9
Q ss_pred CCCCCcchHHHHHHHHHHhc------------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHH
Q 038663 155 DYVPLESSSKALNSIMKLLK------------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLR 222 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~ 222 (385)
.+..++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.... ..+.+..+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-------~~~~v~~~--- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSS--- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-------EEEEEEHH---
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEeeHH---
Confidence 34567888888888887662 112356899999999999999999998742 11222221
Q ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh-------------hhhhcCC---CCCCCCCe
Q 038663 223 RIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSGIP---YGEEGNRC 286 (385)
Q Consensus 223 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~-------------~~~l~~~---~~~~~~gs 286 (385)
.+.. ....... .....+....... ++.+|+|||+..... ...+... +.....+.
T Consensus 119 ~l~~--------~~~g~~~-~~~~~~f~~a~~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 DLVS--------KWMGESE-KLVKQLFAMAREN-KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp HHHS--------CC---CH-HHHHHHHHHHHHT-SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred HHhh--------hhcchHH-HHHHHHHHHHHHc-CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 1111 0111111 1222233333321 789999999975320 1111111 11123456
Q ss_pred EEEEeeCChhh-hh--hcC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCC-hHHHHHH
Q 038663 287 KVIVTSRRLDV-CS--KMS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSL-PSAIAIV 353 (385)
Q Consensus 287 ~iivTtr~~~v-~~--~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~~ 353 (385)
.||.||..... .. ... ...+.+.+.+.++..+++...+..............|++.+.|+ |-.|..+
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 67777765532 11 113 57788999999999999998885432111234567799999995 4334333
No 38
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.78 E-value=6.4e-07 Score=85.46 Aligned_cols=182 Identities=16% Similarity=0.164 Sum_probs=104.9
Q ss_pred CCCCCCCcchHHHHHHHHHHhc------------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCC
Q 038663 153 TPDYVPLESSSKALNSIMKLLK------------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSD 220 (385)
Q Consensus 153 ~~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~ 220 (385)
...+..++|.+..++.|.+++. ....+.+.|+|++|+|||+||+.+++.... ..+.+..++
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-------~~~~v~~~~ 183 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-------TFFNISAAS 183 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEEECSCC
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-------cEEEeeHHH
Confidence 3445678999999999988772 123468999999999999999999887541 222333332
Q ss_pred HHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-------------hhhhhcCCC---C-CCC
Q 038663 221 LRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI-------------NLAVSGIPY---G-EEG 283 (385)
Q Consensus 221 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-------------~~~~l~~~~---~-~~~ 283 (385)
...-. .... ......+....... ...+|+|||++... ....+...+ . ...
T Consensus 184 l~~~~-----------~g~~-~~~~~~~~~~a~~~-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 184 LTSKY-----------VGEG-EKLVRALFAVAREL-QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp C------------------C-HHHHHHHHHHHHHS-SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred hhccc-----------cchH-HHHHHHHHHHHHhc-CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 21100 0011 11122333333332 56899999996430 011111111 1 112
Q ss_pred CCeEEEEeeCChhh-h-hhc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 038663 284 NRCKVIVTSRRLDV-C-SKM-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPS-AIAIVA 354 (385)
Q Consensus 284 ~gs~iivTtr~~~v-~-~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~ 354 (385)
....||.||..... . ... . ...+.+...+.++...++...+......-..+....|++.+.|+.- ++..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566767765332 1 111 2 4578899999999999999887543222234566789999998655 555554
No 39
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.77 E-value=1e-06 Score=80.58 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=103.0
Q ss_pred CCCCCCcchHHHHHHHHHHhcc------------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCH
Q 038663 154 PDYVPLESSSKALNSIMKLLKD------------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDL 221 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~ 221 (385)
..+..++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.... ..+.+..+..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-------~~~~i~~~~l 90 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-------TFLNISAASL 90 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-------EEEEEESTTT
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEeeHHHH
Confidence 3455688999998888887631 23568999999999999999999987641 2222333211
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh-------------hhhhc---CCCCC--CC
Q 038663 222 RRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKIN-------------LAVSG---IPYGE--EG 283 (385)
Q Consensus 222 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~-------------~~~l~---~~~~~--~~ 283 (385)
. ..... ........+....... ++.+|+|||+..... ...+. ..++. .+
T Consensus 91 ~-----------~~~~~-~~~~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 91 T-----------SKYVG-DGEKLVRALFAVARHM-QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp S-----------SSSCS-CHHHHHHHHHHHHHHT-CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred h-----------hcccc-hHHHHHHHHHHHHHHc-CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 00011 1122222223333221 778999999964310 00110 11111 12
Q ss_pred CCeEEEEeeCChhh-hhh-c-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChH-HHHHHH
Q 038663 284 NRCKVIVTSRRLDV-CSK-M-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPS-AIAIVA 354 (385)
Q Consensus 284 ~gs~iivTtr~~~v-~~~-~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~ 354 (385)
.+..||.||..... ... . . ...+.++..+.++...++...+......-.......|++.+.|++- ++..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34667777766432 111 1 2 4678888888888888888776322111123566779999999886 554443
No 40
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.75 E-value=5.8e-07 Score=87.23 Aligned_cols=175 Identities=17% Similarity=0.128 Sum_probs=101.4
Q ss_pred CCCCCCcchHHHHHHHHHHhc------------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCH
Q 038663 154 PDYVPLESSSKALNSIMKLLK------------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDL 221 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~ 221 (385)
..+..+.|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++..... ..+.+..+++
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~------~~~~v~~~~l 204 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS------TFFSISSSDL 204 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS------EEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC------CEEEEeHHHH
Confidence 345568898888888887662 1234789999999999999999999986211 2222222222
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-------------hhhhhcCCCCC---CCCC
Q 038663 222 RRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI-------------NLAVSGIPYGE---EGNR 285 (385)
Q Consensus 222 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-------------~~~~l~~~~~~---~~~g 285 (385)
.. .. .+. ... ....+....... ++.+|+|||+.... ....+...+.. ...+
T Consensus 205 ~~---~~---~g~--~~~----~~~~~f~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 205 VS---KW---LGE--SEK----LVKNLFQLAREN-KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp ---------------CCC----THHHHHHHHHHS-CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred Hh---hh---cch--HHH----HHHHHHHHHHHc-CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11 00 010 011 112222223322 78899999997541 11222222221 2346
Q ss_pred eEEEEeeCChhhh--hhc-C-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCCh
Q 038663 286 CKVIVTSRRLDVC--SKM-S-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLP 347 (385)
Q Consensus 286 s~iivTtr~~~v~--~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlP 347 (385)
..||.||...... ... . ...+.+.+.+.++...+|...+..............|++.+.|+.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~s 337 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYS 337 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCC
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCC
Confidence 6777777654321 112 2 567889999999999999988754321112355677899999953
No 41
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.72 E-value=1.4e-07 Score=87.61 Aligned_cols=178 Identities=14% Similarity=0.156 Sum_probs=104.2
Q ss_pred CCCCCCcchHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCC-HHHHHHHHHHH
Q 038663 154 PDYVPLESSSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSD-LRRIQDKIAEL 231 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~-~~~l~~~i~~~ 231 (385)
..+..++|++..++.|.+++..+.. .++.+.|++|+|||++|+.+.+.... ..+.+..++ ....++.
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-------~~~~i~~~~~~~~~i~~---- 91 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-------DMMFVNGSDCKIDFVRG---- 91 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-------EEEEEETTTCCHHHHHT----
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-------CEEEEcccccCHHHHHH----
Confidence 3456789999999999999986544 57788888999999999999987641 333444441 1111111
Q ss_pred hcCccccccHHHHHHHHHHHHHhc---CCcEEEEEeCCCcch---hhhhhcCCCCCCCCCeEEEEeeCChh-hhhh-cC-
Q 038663 232 LKFKIEEENELQRRATLAKRLRER---TKKVLIILDDVREKI---NLAVSGIPYGEEGNRCKVIVTSRRLD-VCSK-MS- 302 (385)
Q Consensus 232 l~~~~~~~~~~~~~~~l~~~l~~~---~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~iivTtr~~~-v~~~-~~- 302 (385)
.+.+..... +++-+|+|||++... ....+...+.....++++|+||.... +... ..
T Consensus 92 ---------------~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 92 ---------------PLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp ---------------HHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred ---------------HHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 111111110 167899999998643 33333222222224567888876654 2111 12
Q ss_pred CceEEcCCCCHHHHHHHHHH-------hhCCCCCcch-HHHHHHHHHHhCCChHHHHHHHHHh
Q 038663 303 DVTVQIEELGEEDRLKLFKQ-------IARLPDSEAF-EGAAKVIVKACGSLPSAIAIVAGAL 357 (385)
Q Consensus 303 ~~~~~l~~L~~~~~~~lf~~-------~~~~~~~~~~-~~~~~~I~~~c~GlPlai~~~~~~L 357 (385)
...+.+++++.++..+++.. .+......-. .+....|++.++|.+-.+......+
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 56899999998885443322 2211111111 2666778899988776544443333
No 42
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=3e-07 Score=86.07 Aligned_cols=180 Identities=16% Similarity=0.147 Sum_probs=105.0
Q ss_pred CCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcC
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKF 234 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~ 234 (385)
....++|.+..++.|...+..+....+.++|++|+||||+|+.+.+..... .+. ....-+..++.
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~-~~~~~~~~~~~------------- 87 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYS-NMVLELNASDD------------- 87 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT-SHH-HHEEEECTTSC-------------
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-Ccc-ceEEEEcCccc-------------
Confidence 345578888888888888887766669999999999999999999886421 111 01111222210
Q ss_pred ccccccHHHHHHHHHHHHHhc----CCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChh-hhh-hcC-Cce
Q 038663 235 KIEEENELQRRATLAKRLRER----TKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLD-VCS-KMS-DVT 305 (385)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~~----~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~-v~~-~~~-~~~ 305 (385)
.........+....+.. +.+-++|+|+++.. .....+...+......+++|++|.... +.. ... ...
T Consensus 88 ----~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~ 163 (340)
T 1sxj_C 88 ----RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTR 163 (340)
T ss_dssp ----CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred ----ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhcee
Confidence 01111111122222110 14678999998643 223333222222234566777665432 211 122 568
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 306 VQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 306 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
+.+.+++.++....+.+.+......-..+..+.|++.++|.+--+..+
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 164 FRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred EeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 899999999999988877622211122356677899999988754433
No 43
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.62 E-value=1.2e-06 Score=81.65 Aligned_cols=168 Identities=10% Similarity=0.048 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhccCCc-eEEEEEcCCCCchHHHHHHHHHHhhhhC--------------------CCCCceEEEEEcCC
Q 038663 162 SSKALNSIMKLLKDEKV-NIIGVQGPGGVGKSTLMEQLAKQIDTIA--------------------PYDKAHVIVAESSD 220 (385)
Q Consensus 162 r~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~F~~~~~~wv~vs~ 220 (385)
.++..+.+...+..++. +.+.++|++|+|||++|+.+.+...... |++ ..++...+
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d---~~~~~~~~ 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD---YYTLAPEK 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT---EEEECCCT
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC---EEEEeccc
Confidence 35566777777776654 4699999999999999999998764221 111 11111100
Q ss_pred HHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhc---CCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCCh
Q 038663 221 LRRIQDKIAELLKFKIEEENELQRRATLAKRLRER---TKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRL 295 (385)
Q Consensus 221 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~---~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~ 295 (385)
.......+. ...+.+.+... +++-++|+|+++.. ...+.+...+.+...++.+|++|...
T Consensus 84 --------------~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 84 --------------GKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp --------------TCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred --------------cCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 000111111 12233332210 26788999999854 23344433333334466777766654
Q ss_pred h-hhh-hcC-CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHH
Q 038663 296 D-VCS-KMS-DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAI 352 (385)
Q Consensus 296 ~-v~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 352 (385)
. +.. ... ...+.+.+++.++..+.+.+.... ..+....+++.++|.|..+..
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~-----~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTM-----SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCC-----CHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcCC-----CHHHHHHHHHHcCCCHHHHHH
Confidence 3 322 223 678999999999999999887621 124557789999999976644
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.62 E-value=5e-07 Score=83.89 Aligned_cols=165 Identities=19% Similarity=0.196 Sum_probs=92.7
Q ss_pred HHHHHHHHhccC--CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHH
Q 038663 165 ALNSIMKLLKDE--KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENEL 242 (385)
Q Consensus 165 ~~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~ 242 (385)
....+..++..+ ....+.|+|++|+||||||+.+++..... .+ ..++++.+ .+...+...+.. .
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~---~~~~i~~~---~~~~~~~~~~~~----~--- 87 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY---RVIYSSAD---DFAQAMVEHLKK----G--- 87 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC---CEEEEEHH---HHHHHHHHHHHH----T---
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC---EEEEEEHH---HHHHHHHHHHHc----C---
Confidence 344455554443 35688999999999999999999987543 12 23344433 222333322211 0
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCcch---hh-hhhcCCCCC-CCCCeEEEEeeCChhh---------hhhcC-CceEE
Q 038663 243 QRRATLAKRLRERTKKVLIILDDVREKI---NL-AVSGIPYGE-EGNRCKVIVTSRRLDV---------CSKMS-DVTVQ 307 (385)
Q Consensus 243 ~~~~~l~~~l~~~~kr~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTtr~~~v---------~~~~~-~~~~~ 307 (385)
....+...+. +.-+|+|||++... .+ ..+...+.. ...+..+|+||.+..- .+.+. ...+.
T Consensus 88 -~~~~~~~~~~---~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~ 163 (324)
T 1l8q_A 88 -TINEFRNMYK---SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVE 163 (324)
T ss_dssp -CHHHHHHHHH---TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEE
T ss_pred -cHHHHHHHhc---CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEE
Confidence 0112222232 46799999997543 11 222111110 1235568887764321 12222 36799
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHH
Q 038663 308 IEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSA 349 (385)
Q Consensus 308 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPla 349 (385)
++| +.++...++...+......-..+....|++.+ |.+-.
T Consensus 164 l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHH
T ss_pred eCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHH
Confidence 999 99999999998873221112235667788888 66543
No 45
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.55 E-value=2.1e-06 Score=83.92 Aligned_cols=152 Identities=14% Similarity=0.151 Sum_probs=85.8
Q ss_pred CCCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhC---CCCCceEEEEEcCCHHHHHHHHHH
Q 038663 154 PDYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIA---PYDKAHVIVAESSDLRRIQDKIAE 230 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~~~wv~vs~~~~l~~~i~~ 230 (385)
....+++||+.++..+...+.......+.|+|++|+|||++|+.+++...... .+. ..-++.+... .
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~--~~~~~~l~~~--------~ 246 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR--DKRVMTLDMG--------T 246 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS--SCCEECC------------
T ss_pred CCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhc--CCeEEEeeCC--------c
Confidence 34567999999999999999766666788999999999999999999864221 011 1111111100 0
Q ss_pred HhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhh------hh-hcC-
Q 038663 231 LLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDV------CS-KMS- 302 (385)
Q Consensus 231 ~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v------~~-~~~- 302 (385)
..... .......+...+... ++.+|++| ...+....+...+. . ...++|.+|..... .. ...
T Consensus 247 ~~~g~-----~e~~~~~~~~~~~~~-~~~iLfiD--~~~~a~~~L~~~L~-~-g~v~vI~at~~~e~~~~~~~~~al~~R 316 (468)
T 3pxg_A 247 KYRGE-----FEDRLKKVMDEIRQA-GNIILFID--AAIDASNILKPSLA-R-GELQCIGATTLDEYRKYIEKDAALERR 316 (468)
T ss_dssp -----------CTTHHHHHHHHHTC-CCCEEEEC--C--------CCCTT-S-SSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred cccch-----HHHHHHHHHHHHHhc-CCeEEEEe--CchhHHHHHHHhhc-C-CCEEEEecCCHHHHHHHhhcCHHHHHh
Confidence 00000 001122233333332 67899999 22222223333332 2 23556666655431 11 111
Q ss_pred CceEEcCCCCHHHHHHHHHHhhC
Q 038663 303 DVTVQIEELGEEDRLKLFKQIAR 325 (385)
Q Consensus 303 ~~~~~l~~L~~~~~~~lf~~~~~ 325 (385)
...+.+.+.+.++...++.....
T Consensus 317 f~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 317 FQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTT
T ss_pred CccceeCCCCHHHHHHHHHHHHH
Confidence 45799999999999999998763
No 46
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.54 E-value=4.1e-07 Score=76.73 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=42.8
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999877677889999999999999999998864
No 47
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.52 E-value=4.4e-06 Score=76.72 Aligned_cols=171 Identities=14% Similarity=0.190 Sum_probs=97.7
Q ss_pred CCCCCcchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCH
Q 038663 155 DYVPLESSSKALNSIMKLLKD-------------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDL 221 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~ 221 (385)
...++.|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.... ..+. ++ .
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-------~~i~--v~-~ 82 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFIS--IK-G 82 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------EEEE--EC-H
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-------CEEE--EE-h
Confidence 345578888877777766531 34568999999999999999999987641 1122 22 2
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh----------------hhhhcCCCC--CCC
Q 038663 222 RRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKIN----------------LAVSGIPYG--EEG 283 (385)
Q Consensus 222 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~--~~~ 283 (385)
..+.... .+.. .......+...... .+.+|+|||+..... ...+...+. ...
T Consensus 83 ~~l~~~~---~g~~-----~~~~~~~f~~a~~~--~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 83 PELLTMW---FGES-----EANVREIFDKARQA--APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHHHH---HTTC-----TTHHHHHHHHHHHT--CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred HHHHhhh---cCch-----HHHHHHHHHHHHhc--CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 2222211 1111 11112222222334 689999999974210 111111110 123
Q ss_pred CCeEEEEeeCChhhh-h-hc---C-CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChHH
Q 038663 284 NRCKVIVTSRRLDVC-S-KM---S-DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPSA 349 (385)
Q Consensus 284 ~gs~iivTtr~~~v~-~-~~---~-~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPla 349 (385)
.+..||.||...... . .+ . ...+.+.+.+.++-.+++...+... ....+ ..++..+.|+|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 456788888765421 1 11 2 5678999999999999998877433 12223 2355667777643
No 48
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.52 E-value=3.6e-06 Score=79.65 Aligned_cols=202 Identities=18% Similarity=0.230 Sum_probs=115.0
Q ss_pred CCCCCCCCcchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEc
Q 038663 152 ATPDYVPLESSSKALNSIMKLLK----D---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAES 218 (385)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~v 218 (385)
|...+.++-|-++.+++|.+.+. . ...+-+.++||+|+|||.||+.+++..... | +.+..
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~--f-----~~v~~ 215 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK--F-----IRVSG 215 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE--E-----EEEEG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC--c-----eEEEh
Confidence 44455567788877777776553 1 245778999999999999999999987631 2 22332
Q ss_pred CCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------h------hhhhcCCCC--
Q 038663 219 SDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------N------LAVSGIPYG-- 280 (385)
Q Consensus 219 s~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------~------~~~l~~~~~-- 280 (385)
+++. ..+... .......+....+.. .+++|+||++.... + ...+...+.
T Consensus 216 s~l~-----------sk~vGe-se~~vr~lF~~Ar~~-aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 216 AELV-----------QKYIGE-GSRMVRELFVMAREH-APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp GGGS-----------CSSTTH-HHHHHHHHHHHHHHT-CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHhh-----------ccccch-HHHHHHHHHHHHHHh-CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 2110 011111 122223333333332 78999999987431 0 111111111
Q ss_pred CCCCCeEEEEeeCChhh---hhhc--C-CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChHH-H
Q 038663 281 EEGNRCKVIVTSRRLDV---CSKM--S-DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPSA-I 350 (385)
Q Consensus 281 ~~~~gs~iivTtr~~~v---~~~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPla-i 350 (385)
....+..||.||..... +-.. . +..+.++.-+.++-.++|+.++... .+.++ ..|++.|.|+--| |
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~SGADi 358 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCSGADV 358 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCCHHHH
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCCHHHH
Confidence 22345667777766543 2222 2 7889999999999999998877443 22233 4577888886543 2
Q ss_pred HH---HHHH--hcCCCCCCcchhhhhhHHHHHHHHH
Q 038663 351 AI---VAGA--LRGKLANESNESLVNIWNDAVEEVI 381 (385)
Q Consensus 351 ~~---~~~~--L~~~~~~~~~~~~~~~W~~~~~~l~ 381 (385)
.. -|.+ ++... ...+.+++..+++++.
T Consensus 359 ~~l~~eA~~~Air~~~----~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 359 KGVCTEAGMYALRERR----IHVTQEDFELAVGKVM 390 (405)
T ss_dssp HHHHHHHHHHHHHTTC----SBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC----CCcCHHHHHHHHHHHh
Confidence 21 1222 22322 1125778888776653
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.51 E-value=4.1e-07 Score=95.53 Aligned_cols=180 Identities=13% Similarity=0.153 Sum_probs=97.2
Q ss_pred CCCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhC---CCCCceEEEEEcCCHHHHHHHHHH
Q 038663 154 PDYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIA---PYDKAHVIVAESSDLRRIQDKIAE 230 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~~~wv~vs~~~~l~~~i~~ 230 (385)
....+++||+.++..+.+.+.......+.|+|++|+|||+||+.+.+...... ...+...+.+..+....
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 34567999999999999999876666789999999999999999999874321 11111333443332211
Q ss_pred HhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchh-------hhh--hcCCCCCCCCCeEEEEeeCChhh----
Q 038663 231 LLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKIN-------LAV--SGIPYGEEGNRCKVIVTSRRLDV---- 297 (385)
Q Consensus 231 ~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~-------~~~--l~~~~~~~~~gs~iivTtr~~~v---- 297 (385)
+... ..........+...+....++.+|+|||++.... ++. +..++.. ..+..+|.+|.....
T Consensus 240 --g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-~~~i~~I~at~~~~~~~~~ 315 (854)
T 1qvr_A 240 --GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-RGELRLIGATTLDEYREIE 315 (854)
T ss_dssp ---------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH-TTCCCEEEEECHHHHHHHT
T ss_pred --cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-CCCeEEEEecCchHHhhhc
Confidence 0000 0112222333334444323679999999975420 111 1111111 123456665554332
Q ss_pred -hh-hcC-CceEEcCCCCHHHHHHHHHHhhC----CCCCcchHHHHHHHHHHhC
Q 038663 298 -CS-KMS-DVTVQIEELGEEDRLKLFKQIAR----LPDSEAFEGAAKVIVKACG 344 (385)
Q Consensus 298 -~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~----~~~~~~~~~~~~~I~~~c~ 344 (385)
.. ... ...+.+.+++.++..+++..... .....-..+....+++.+.
T Consensus 316 ~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~ 369 (854)
T 1qvr_A 316 KDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSH 369 (854)
T ss_dssp TCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHH
T ss_pred cCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHh
Confidence 11 122 45699999999999999975441 1111222345555666663
No 50
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.1e-05 Score=76.78 Aligned_cols=203 Identities=16% Similarity=0.200 Sum_probs=113.4
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEE
Q 038663 151 LATPDYVPLESSSKALNSIMKLLK----D---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAE 217 (385)
Q Consensus 151 ~~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~ 217 (385)
.|...+.++-|-++.++.|.+.+. . ...+-|.++||+|+|||.||+.++++.... | +.+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f-----i~v~ 248 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F-----LRIV 248 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E-----EEEE
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E-----EEEE
Confidence 344455567788877777766542 1 245789999999999999999999987631 2 2223
Q ss_pred cCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------------hhhhhcCCC--
Q 038663 218 SSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPY-- 279 (385)
Q Consensus 218 vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------------~~~~l~~~~-- 279 (385)
.+++ ...... ........+....+.. .+++|+||++.... .+..+...+
T Consensus 249 ~s~l-----------~sk~vG-esek~ir~lF~~Ar~~-aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 249 GSEL-----------IQKYLG-DGPRLCRQIFKVAGEN-APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp SGGG-----------CCSSSS-HHHHHHHHHHHHHHHT-CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHh-----------hhccCc-hHHHHHHHHHHHHHhc-CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 2211 001111 1222233333333332 78999999986321 011111111
Q ss_pred CCCCCCeEEEEeeCChhhhh--hc---C-CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChHH-
Q 038663 280 GEEGNRCKVIVTSRRLDVCS--KM---S-DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPSA- 349 (385)
Q Consensus 280 ~~~~~gs~iivTtr~~~v~~--~~---~-~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPla- 349 (385)
.....+..||.||....... .+ . +..+.+..-+.++-.++|+.++... .+.++ ..|++.+.|+-=|
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfSGAD 391 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLSGAD 391 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCCHHH
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCCHHH
Confidence 12234566777776655411 12 2 6678899889999899998877443 22233 4477788876532
Q ss_pred HH---HHHHH--hcCCCCCCcchhhhhhHHHHHHHHH
Q 038663 350 IA---IVAGA--LRGKLANESNESLVNIWNDAVEEVI 381 (385)
Q Consensus 350 i~---~~~~~--L~~~~~~~~~~~~~~~W~~~~~~l~ 381 (385)
|. .-|.+ ++... ..++.+++..+++++.
T Consensus 392 I~~l~~eA~~~Air~~~----~~It~eDf~~Al~rv~ 424 (437)
T 4b4t_I 392 IQAMCTEAGLLALRERR----MQVTAEDFKQAKERVM 424 (437)
T ss_dssp HHHHHHHHHHHHHHTTC----SCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC----CccCHHHHHHHHHHHh
Confidence 11 11222 22222 1125777888777654
No 51
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.41 E-value=1.2e-05 Score=78.82 Aligned_cols=174 Identities=16% Similarity=0.220 Sum_probs=100.6
Q ss_pred CCCCcchHHHHHHHHHHhc-------------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHH
Q 038663 156 YVPLESSSKALNSIMKLLK-------------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLR 222 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~ 222 (385)
+..+.|.+..++.|.+++. ....+.+.|+|++|+|||+||+.+.+... . ..+.+..++.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~-----~fv~vn~~~l- 274 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A-----FFFLINGPEI- 274 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--S-----EEEEEEHHHH-
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--C-----CEEEEEchHh-
Confidence 4468899988888888764 13456789999999999999999988753 1 1222222111
Q ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-------------hhhhhcCCCC--CCCCCeE
Q 038663 223 RIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI-------------NLAVSGIPYG--EEGNRCK 287 (385)
Q Consensus 223 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-------------~~~~l~~~~~--~~~~gs~ 287 (385)
. ..............+...... ++.+|+|||+.... ....+...+. ....+..
T Consensus 275 --~--------~~~~g~~~~~~~~~f~~A~~~--~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 275 --M--------SKLAGESESNLRKAFEEAEKN--APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp --H--------TSCTTHHHHHHHHHHHHHHHT--CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred --h--------hhhcchhHHHHHHHHHHHHhc--CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 1 111111122222333333344 78899999994220 0111111111 1233567
Q ss_pred EEEeeCChhh-hhh----cC-CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCC-hHHHHHH
Q 038663 288 VIVTSRRLDV-CSK----MS-DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSL-PSAIAIV 353 (385)
Q Consensus 288 iivTtr~~~v-~~~----~~-~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~Gl-Plai~~~ 353 (385)
||.||..... ... .. ...+.+.+.+.++-.++|...+... ....+ .++++.+.|+ +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 7777776532 111 12 5679999999999999999887433 22223 4466777775 4444444
No 52
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=9.8e-06 Score=77.67 Aligned_cols=172 Identities=16% Similarity=0.232 Sum_probs=99.4
Q ss_pred CCCCCCCCcchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEc
Q 038663 152 ATPDYVPLESSSKALNSIMKLLK----D---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAES 218 (385)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~v 218 (385)
|...+.++.|-++.++.|.+.+. . ...+-|.++||+|+|||.||+.+++.... +| +.+..
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~--~f-----~~v~~ 248 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA--TF-----LKLAA 248 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--EE-----EEEEG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC--CE-----EEEeh
Confidence 44455677888888888876542 1 24678999999999999999999998763 12 22333
Q ss_pred CCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch------------h----hhhhcCCCC--
Q 038663 219 SDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI------------N----LAVSGIPYG-- 280 (385)
Q Consensus 219 s~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~-- 280 (385)
+++ ....... .......+....+.. .+++|+||++.... . ...+...+.
T Consensus 249 s~l-----------~~~~vGe-se~~ir~lF~~A~~~-aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 249 PQL-----------VQMYIGE-GAKLVRDAFALAKEK-APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp GGG-----------CSSCSSH-HHHHHHHHHHHHHHH-CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred hhh-----------hhcccch-HHHHHHHHHHHHHhc-CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 211 0011111 122223333332222 78999999986320 0 111111111
Q ss_pred CCCCCeEEEEeeCChhhh-hhc----C-CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCCh
Q 038663 281 EEGNRCKVIVTSRRLDVC-SKM----S-DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLP 347 (385)
Q Consensus 281 ~~~~gs~iivTtr~~~v~-~~~----~-~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlP 347 (385)
....+..||.||...... ..+ . +..+.++.-+.++-.++|+.++... .+-++ ..|++.|.|+-
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEFN 387 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSCC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 122355677777665431 111 2 6788999999988888888766322 22233 45778888864
No 53
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1e-05 Score=77.57 Aligned_cols=202 Identities=20% Similarity=0.233 Sum_probs=112.0
Q ss_pred CCCCCCCCcchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEc
Q 038663 152 ATPDYVPLESSSKALNSIMKLLK----D---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAES 218 (385)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~v 218 (385)
|...+.++.|-++.++.|.+.+. . ...+-|.++||+|+|||+||+.+++..... | +.+..
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~--~-----~~v~~ 248 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN--F-----IFSPA 248 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--E-----EEEEG
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E-----EEEeh
Confidence 33445566787777777766543 1 245789999999999999999999987631 2 22333
Q ss_pred CCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------------hhhhhcCCC--C
Q 038663 219 SDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPY--G 280 (385)
Q Consensus 219 s~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------------~~~~l~~~~--~ 280 (385)
+++ ....... .......+....+.. .+++|+||++.... .+..+...+ .
T Consensus 249 s~l-----------~sk~~Ge-se~~ir~~F~~A~~~-~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 249 SGI-----------VDKYIGE-SARIIREMFAYAKEH-EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp GGT-----------CCSSSSH-HHHHHHHHHHHHHHS-CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred hhh-----------ccccchH-HHHHHHHHHHHHHhc-CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 211 0011111 122233333333332 78999999986421 011111111 1
Q ss_pred CCCCCeEEEEeeCChhhh-h-hc--C--CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChHH-H
Q 038663 281 EEGNRCKVIVTSRRLDVC-S-KM--S--DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPSA-I 350 (385)
Q Consensus 281 ~~~~gs~iivTtr~~~v~-~-~~--~--~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPla-i 350 (385)
....+..||.||...... . .+ + +..+.++.-+.++-.++|+.++... ...++ ..|++.|.|+--| |
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~sGADi 391 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFNGADI 391 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCCHHHH
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCCHHHH
Confidence 223456778788665431 1 11 2 6678898889888888888777332 22333 4577788886543 2
Q ss_pred HHH---HHH--hcCCCCCCcchhhhhhHHHHHHHHH
Q 038663 351 AIV---AGA--LRGKLANESNESLVNIWNDAVEEVI 381 (385)
Q Consensus 351 ~~~---~~~--L~~~~~~~~~~~~~~~W~~~~~~l~ 381 (385)
..+ |.+ ++... ..++.++...+++++.
T Consensus 392 ~~l~~eA~~~air~~~----~~i~~~d~~~Al~~v~ 423 (437)
T 4b4t_L 392 RNCATEAGFFAIRDDR----DHINPDDLMKAVRKVA 423 (437)
T ss_dssp HHHHHHHHHHHHHTTC----SSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC----CCCCHHHHHHHHHHHH
Confidence 221 222 22221 1125677777776654
No 54
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.36 E-value=3.2e-06 Score=87.68 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=85.8
Q ss_pred CCCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhC-CC--CCceEEEEEcCCHHHHHHHHHH
Q 038663 154 PDYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIA-PY--DKAHVIVAESSDLRRIQDKIAE 230 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F--~~~~~~wv~vs~~~~l~~~i~~ 230 (385)
....+++||+.+++.+...+.......+.++|++|+|||++|+.+.+...... .+ .+ +. ++.++.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~-~~-~~~~~~---------- 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD-KR-VMTLDM---------- 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSS-CC-EECC------------
T ss_pred CCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcC-Ce-EEEecc----------
Confidence 34567999999999999999776666789999999999999999999863211 00 10 11 111111
Q ss_pred HhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhh------hhh-cC-
Q 038663 231 LLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDV------CSK-MS- 302 (385)
Q Consensus 231 ~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v------~~~-~~- 302 (385)
+...... .......+...+... ++.+|+|| ...+....+...+ . ....++|.||..... ... ..
T Consensus 245 --g~~~~G~-~e~~l~~~~~~~~~~-~~~iLfiD--~~~~~~~~L~~~l-~-~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 245 --GTKYRGE-FEDRLKKVMDEIRQA-GNIILFID--AAIDASNILKPSL-A-RGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp -----------CTTHHHHHHHHHTC-CCCEEEEC--C--------CCCT-T-SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred --cccccch-HHHHHHHHHHHHHhc-CCEEEEEc--CchhHHHHHHHHH-h-cCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 0000000 001112222223322 78899999 2222222233333 2 224566666655441 111 11
Q ss_pred CceEEcCCCCHHHHHHHHHHhhC
Q 038663 303 DVTVQIEELGEEDRLKLFKQIAR 325 (385)
Q Consensus 303 ~~~~~l~~L~~~~~~~lf~~~~~ 325 (385)
...+.+.+.+.++..+++.....
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHHH
Confidence 46799999999999999997663
No 55
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.6e-05 Score=76.36 Aligned_cols=202 Identities=18% Similarity=0.230 Sum_probs=113.8
Q ss_pred CCCCCCCCcchHHHHHHHHHHhc-------------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEc
Q 038663 152 ATPDYVPLESSSKALNSIMKLLK-------------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAES 218 (385)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~v 218 (385)
|...+.++.|-++.++.|.+.+. -...+-|.++||+|+|||.||+.+++..... | +.+..
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~--f-----i~vs~ 276 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT--F-----IRVIG 276 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE--E-----EEEEG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC--e-----EEEEh
Confidence 33344567788887777776542 1356789999999999999999999987631 2 22332
Q ss_pred CCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------------hhhhhcCCC--C
Q 038663 219 SDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPY--G 280 (385)
Q Consensus 219 s~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------------~~~~l~~~~--~ 280 (385)
+++ ....... .......+....+.. .+++|+||++.... ....+...+ .
T Consensus 277 s~L-----------~sk~vGe-sek~ir~lF~~Ar~~-aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 277 SEL-----------VQKYVGE-GARMVRELFEMARTK-KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp GGG-----------CCCSSSH-HHHHHHHHHHHHHHT-CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred HHh-----------hcccCCH-HHHHHHHHHHHHHhc-CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 211 0111111 122223333333332 78999999986331 001111111 1
Q ss_pred CCCCCeEEEEeeCChhh---hhhc--C-CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChHH--
Q 038663 281 EEGNRCKVIVTSRRLDV---CSKM--S-DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPSA-- 349 (385)
Q Consensus 281 ~~~~gs~iivTtr~~~v---~~~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPla-- 349 (385)
....+..||.||..... +-.. . +..+.+..-+.++-.++|+.++... .+-++ ..|++.|.|+--|
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfSGADI 419 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNSTGAEL 419 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCCHHHH
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCCHHHH
Confidence 12345567777765543 2222 2 7889999999999999998887543 22233 4577888887532
Q ss_pred --HHHHHHHh---cCCCCCCcchhhhhhHHHHHHHHHh
Q 038663 350 --IAIVAGAL---RGKLANESNESLVNIWNDAVEEVIR 382 (385)
Q Consensus 350 --i~~~~~~L---~~~~~~~~~~~~~~~W~~~~~~l~~ 382 (385)
+..-|.+. +.+.. .+.+.+..+++++..
T Consensus 420 ~~l~~eAa~~Air~~~~~-----it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 420 RSVCTEAGMFAIRARRKV-----ATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHHHHHHHHHHHHHTCSS-----BCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCc-----cCHHHHHHHHHHHhc
Confidence 22212222 22221 256778777776643
No 56
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.34 E-value=5.8e-06 Score=77.06 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=94.2
Q ss_pred CCCCCcchHHHHHHHHHHhcc-----CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHH
Q 038663 155 DYVPLESSSKALNSIMKLLKD-----EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIA 229 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~ 229 (385)
....++|.+..++.+...+.. .....+.|+|++|+||||||+.+....... |. ...-+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~-----~~sg~~~-------- 87 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IH-----VTSGPVL-------- 87 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EE-----EEETTTC--------
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EE-----EEechHh--------
Confidence 345577887777777665542 345789999999999999999999987421 11 1111100
Q ss_pred HHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch--hhhhhcC---CCC------CC---------CCCeE-E
Q 038663 230 ELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGI---PYG------EE---------GNRCK-V 288 (385)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~--~~~~l~~---~~~------~~---------~~gs~-i 288 (385)
....... .+...+ . ++-++++|++.... ..+.+.. .+. .. ..... +
T Consensus 88 ---------~~~~~l~-~~~~~~-~--~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 88 ---------VKQGDMA-AILTSL-E--RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ---------CSHHHHH-HHHHHC-C--TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred ---------cCHHHHH-HHHHHc-c--CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 0001111 111111 1 45577888876431 1111110 000 00 01112 2
Q ss_pred EEeeCChhhhhhcC---CceEEcCCCCHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 289 IVTSRRLDVCSKMS---DVTVQIEELGEEDRLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 289 ivTtr~~~v~~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
..|++...+...+. .....+++++.++..+++.+.+......-..+.+..|++.++|.|-.+..+
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 33444443322221 346899999999999999987632211223467888999999999765444
No 57
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.33 E-value=7.8e-05 Score=66.47 Aligned_cols=203 Identities=16% Similarity=0.192 Sum_probs=107.1
Q ss_pred CCCCCcchHHHHHHHHHH---hcc---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHH
Q 038663 155 DYVPLESSSKALNSIMKL---LKD---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLR 222 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~---L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~ 222 (385)
.+..++|.+..++.+.+. +.. ...+-+.|+|++|+||||||+.+++.... . .+.+..++..
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~----~---~~~i~~~~~~ 82 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV----P---FFTISGSDFV 82 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC----C---EEEECSCSST
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC----C---EEEEeHHHHH
Confidence 345677877666655543 321 12346889999999999999999987641 1 1222222211
Q ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------------hhhhhcCCCC--CCCC
Q 038663 223 RIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPYG--EEGN 284 (385)
Q Consensus 223 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~ 284 (385)
. .............+...... .+.++++||+.... ....+...+. ....
T Consensus 83 ~-----------~~~~~~~~~~~~~~~~a~~~--~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 83 E-----------MFVGVGASRVRDMFEQAKKA--APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp T-----------SCCCCCHHHHHHHHHHHHTT--CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred H-----------HhhhhhHHHHHHHHHHHHHc--CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 1 00011112222222222233 57899999984321 0111111110 1233
Q ss_pred CeEEEEeeCChhh-hhh-c---C-CceEEcCCCCHHHHHHHHHHhhCCC-CCcchHHHHHHHHHHhCC-ChHHHHHHH--
Q 038663 285 RCKVIVTSRRLDV-CSK-M---S-DVTVQIEELGEEDRLKLFKQIARLP-DSEAFEGAAKVIVKACGS-LPSAIAIVA-- 354 (385)
Q Consensus 285 gs~iivTtr~~~v-~~~-~---~-~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~I~~~c~G-lPlai~~~~-- 354 (385)
+..||.||..... ... . . ...+.+.+.+.++-.+++...+... ..++ .....++..+.| .+--+..+.
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~--~~~~~la~~~~G~~~~dl~~l~~~ 227 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD--IDAAIIARGTPGFSGADLANLVNE 227 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHcCCCCHHHHHHHHHH
Confidence 5667777765542 111 1 2 5678888889888888888776432 1111 112346778888 665444332
Q ss_pred ----HHhcCCCCCCcchhhhhhHHHHHHHHHhhc
Q 038663 355 ----GALRGKLANESNESLVNIWNDAVEEVIREY 384 (385)
Q Consensus 355 ----~~L~~~~~~~~~~~~~~~W~~~~~~l~~~~ 384 (385)
...+.+. .++.+.++.+++.+...+
T Consensus 228 a~~~a~~~~~~-----~i~~~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 228 AALFAARGNKR-----VVSMVEFEKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHTTCS-----SBCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCC-----cccHHHHHHHHHHHhcCC
Confidence 1122222 126888888888765443
No 58
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.2e-05 Score=77.04 Aligned_cols=172 Identities=19% Similarity=0.241 Sum_probs=94.3
Q ss_pred CCCCCCCCcchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEc
Q 038663 152 ATPDYVPLESSSKALNSIMKLLK----D---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAES 218 (385)
Q Consensus 152 ~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~v 218 (385)
|...+.++.|-++.++.|.+.+. . ...+-+.++||+|+|||+||+.+++.... ..+.+..
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~-------~~~~v~~ 239 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA-------AFIRVNG 239 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC-------EEEEEEG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeEEEec
Confidence 44445567788888777776553 1 24567999999999999999999998762 2223333
Q ss_pred CCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------------hhhhhcCCCC--
Q 038663 219 SDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPYG-- 280 (385)
Q Consensus 219 s~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~-- 280 (385)
++. ........ ......+....+.. .+++|+||++.... ....+...+.
T Consensus 240 ~~l-----------~~~~~Ge~-e~~ir~lF~~A~~~-aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 240 SEF-----------VHKYLGEG-PRMVRDVFRLAREN-APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp GGT-----------CCSSCSHH-HHHHHHHHHHHHHT-CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred chh-----------hccccchh-HHHHHHHHHHHHHc-CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 211 00111111 12222333333332 78999999985321 0111111110
Q ss_pred CCCCCeEEEEeeCChhh---hhhc--C-CceEEcCCCC-HHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCCh
Q 038663 281 EEGNRCKVIVTSRRLDV---CSKM--S-DVTVQIEELG-EEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLP 347 (385)
Q Consensus 281 ~~~~gs~iivTtr~~~v---~~~~--~-~~~~~l~~L~-~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlP 347 (385)
....+..||.||..... +-.. . +..+.+..++ .++-..+|..++... ...++ ..|++.|.|+-
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 12345667778865543 1111 2 5678887664 455556666655322 22233 45777888864
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.31 E-value=1.6e-05 Score=82.46 Aligned_cols=155 Identities=18% Similarity=0.210 Sum_probs=92.7
Q ss_pred CCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCC----CCCceEEE-EEcCCHHHHHHHHH
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAP----YDKAHVIV-AESSDLRRIQDKIA 229 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~~~w-v~vs~~~~l~~~i~ 229 (385)
.+.+++||+.++..+.+.|.......+.|+|++|+|||++|+.+.+....... +. ..++ +..+...
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~--~~~~~~~~~~l~------- 254 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMAD--CTIYSLDIGSLL------- 254 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTT--CEEEECCCC----------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcC--CEEEEEcHHHHh-------
Confidence 45578999999999999998766778899999999999999999988643211 12 2222 1111110
Q ss_pred HHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc----------hh-hhhhcCCCCCCCCCeEEEEeeCChhhh
Q 038663 230 ELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK----------IN-LAVSGIPYGEEGNRCKVIVTSRRLDVC 298 (385)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~----------~~-~~~l~~~~~~~~~gs~iivTtr~~~v~ 298 (385)
...............+.+.+... ++.+|+|||++.. .+ ...+...+ .. .+..+|.+|......
T Consensus 255 ---~~~~~~g~~e~~l~~~~~~~~~~-~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~~-~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 255 ---AGTKYRGDFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-SS-GKIRVIGSTTYQEFS 328 (758)
T ss_dssp ---CCCCCSSCHHHHHHHHHHHHSSS-SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-SS-CCCEEEEEECHHHHH
T ss_pred ---ccccccchHHHHHHHHHHHHHhc-CCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-hC-CCeEEEEEeCchHHh
Confidence 00001111222233333444332 5789999999754 11 12233333 22 345666666554321
Q ss_pred h-------hcC-CceEEcCCCCHHHHHHHHHHhh
Q 038663 299 S-------KMS-DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 299 ~-------~~~-~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
. ... ...+.+.+.+.++..+++....
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1 112 4578999999999998888654
No 60
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.23 E-value=1.1e-05 Score=73.87 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=36.8
Q ss_pred CcchHHHHHHHHHHhcc--------------CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 159 LESSSKALNSIMKLLKD--------------EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
++|++..++.+...+.. .....+.|+|++|+|||++|+.+.+...
T Consensus 17 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 67888888888776643 2356788999999999999999998874
No 61
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.23 E-value=9.8e-06 Score=78.88 Aligned_cols=95 Identities=6% Similarity=-0.012 Sum_probs=56.3
Q ss_pred EEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEe---------eC----Chhh-hhhcC-CceEEcCCCCHHHHHHHHHH
Q 038663 260 LIILDDVREK--INLAVSGIPYGEEGNRCKVIVT---------SR----RLDV-CSKMS-DVTVQIEELGEEDRLKLFKQ 322 (385)
Q Consensus 260 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivT---------tr----~~~v-~~~~~-~~~~~l~~L~~~~~~~lf~~ 322 (385)
++++|+++.. +.++.+...+.......-|+.| |. ...+ ..... ...+.+.+++.++..+++.+
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~~ 377 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKI 377 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHHH
Confidence 8999999854 3455554444333334333344 22 1111 11222 46689999999999999998
Q ss_pred hhCCCCCcchHHHHHHHHHHh-CCChHHHHHHH
Q 038663 323 IARLPDSEAFEGAAKVIVKAC-GSLPSAIAIVA 354 (385)
Q Consensus 323 ~~~~~~~~~~~~~~~~I~~~c-~GlPlai~~~~ 354 (385)
.+......-..+....|+..+ +|.|-....+.
T Consensus 378 ~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 378 RAQTEGINISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHH
Confidence 762111112235667788888 78887555443
No 62
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.21 E-value=2.1e-06 Score=72.41 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhcc---CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCcccc
Q 038663 162 SSKALNSIMKLLKD---EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEE 238 (385)
Q Consensus 162 r~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~ 238 (385)
....++.+.+++.+ .....+.|+|++|+|||||++.++........+. +.+++.. ++...+..........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~---~~~~~~~---~~~~~~~~~~~~~~~~ 92 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR---GYFFDTK---DLIFRLKHLMDEGKDT 92 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC---CCEEEHH---HHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe---EEEEEHH---HHHHHHHHHhcCchHH
Confidence 44455555555532 3457899999999999999999999875333232 2333333 3333333222211000
Q ss_pred ccHHHHHHHHHHHHHhcCCcEEEEEeCCCc--chhhh--hhcCCCCC-CCCCeEEEEeeCCh
Q 038663 239 ENELQRRATLAKRLRERTKKVLIILDDVRE--KINLA--VSGIPYGE-EGNRCKVIVTSRRL 295 (385)
Q Consensus 239 ~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~--~~~~~--~l~~~~~~-~~~gs~iivTtr~~ 295 (385)
.+.+.+. +.-+|||||++. .+.|. .+...+.. ...|..+|+||...
T Consensus 93 --------~~~~~~~---~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 93 --------KFLKTVL---NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp --------HHHHHHH---TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred --------HHHHHhc---CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1222233 467899999973 23332 11111111 12456788888654
No 63
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.18 E-value=2.9e-05 Score=75.56 Aligned_cols=170 Identities=16% Similarity=0.257 Sum_probs=95.4
Q ss_pred CCCCcchHHHHHHHHHHh---ccC---------CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHH
Q 038663 156 YVPLESSSKALNSIMKLL---KDE---------KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRR 223 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L---~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~ 223 (385)
+.++.|.++.++++.+.. ... -.+-+.|+|++|+|||+||+.+...... .| +.++.++...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~--~f-----~~is~~~~~~ 87 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV--PF-----FHISGSDFVE 87 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC--CE-----EEEEGGGTTT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--Ce-----eeCCHHHHHH
Confidence 445778777665555543 221 2345889999999999999999987642 12 2233332111
Q ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------------hhhhhcCCCC--CCCCC
Q 038663 224 IQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPYG--EEGNR 285 (385)
Q Consensus 224 l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~g 285 (385)
. ............+...... .+.+|+||++.... .+..+...+. ....+
T Consensus 88 ~-----------~~g~~~~~~r~lf~~A~~~--~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 88 L-----------FVGVGAARVRDLFAQAKAH--APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp C-----------CTTHHHHHHHHHHHHHHHT--CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred H-----------HhcccHHHHHHHHHHHHhc--CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 0011111222233333444 78999999996421 1122211110 11246
Q ss_pred eEEEEeeCChhhhh--hc---C-CceEEcCCCCHHHHHHHHHHhhCCC-CCcchHHHHHHHHHHhCCCh
Q 038663 286 CKVIVTSRRLDVCS--KM---S-DVTVQIEELGEEDRLKLFKQIARLP-DSEAFEGAAKVIVKACGSLP 347 (385)
Q Consensus 286 s~iivTtr~~~v~~--~~---~-~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~I~~~c~GlP 347 (385)
..||.||....... .. . ...+.+.+.+.++-.+++..++... ..++. ....|++.+.|+.
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 67788887765421 12 2 5588999999888888888777433 11111 1234778888887
No 64
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.13 E-value=6.6e-06 Score=75.58 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=85.4
Q ss_pred CcchHHHHHHHHHHhccC---------CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--CHHHHHHH
Q 038663 159 LESSSKALNSIMKLLKDE---------KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--DLRRIQDK 227 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~~~~l~~~ 227 (385)
++|.+..++.+...+... ....+.|+|++|+|||++|+.+++...... . ..+.+..+ ........
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~--~--~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--E--AMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG--G--GEEEEEGGGCCSTTHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC--c--ceEEeecccccccccHHH
Confidence 668787777777766531 235899999999999999999999864211 1 23334443 11111111
Q ss_pred HHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch--hhhhhcCCCC-----CC------CCCeEEEEeeCC
Q 038663 228 IAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI--NLAVSGIPYG-----EE------GNRCKVIVTSRR 294 (385)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~--~~~~l~~~~~-----~~------~~gs~iivTtr~ 294 (385)
+ ++......... ....+...+... ..-+|+||++.... ....+...+. .. ..++.+|+||..
T Consensus 95 l---~g~~~~~~~~~-~~~~~~~~~~~~-~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 95 L---IGAPPGYVGYE-EGGQLTEAVRRR-PYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp H---HCCCTTSTTTT-TCCHHHHHHHHC-SSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred h---cCCCCcccccc-ccchHHHHHHhC-CCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 1 22111100000 002233444442 45799999997542 2222211110 00 124458888876
Q ss_pred h---------------hh-------------hhhcC--CceEEcCCCCHHHHHHHHHHhh
Q 038663 295 L---------------DV-------------CSKMS--DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 295 ~---------------~v-------------~~~~~--~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
. .. ..... ...+.+.|++.++...++...+
T Consensus 170 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 170 GSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp THHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHT
T ss_pred CHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 2 10 11122 4678899999999998888755
No 65
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.12 E-value=2.3e-05 Score=80.63 Aligned_cols=149 Identities=15% Similarity=0.199 Sum_probs=83.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERT 256 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 256 (385)
.++-|.++||+|+|||+||+.++++... ..+.+..++ +. ......... ....+.+..+..
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~-------~~~~v~~~~---l~--------sk~~gese~-~lr~lF~~A~~~- 296 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGA-------FFFLINGPE---IM--------SKLAGESES-NLRKAFEEAEKN- 296 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTC-------EEEEEEHHH---HH--------SSCTTHHHH-HHHHHHHHHTTS-
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC-------eEEEEEhHH---hh--------cccchHHHH-HHHHHHHHHHHc-
Confidence 4578999999999999999999987652 222222211 11 111111122 222233322222
Q ss_pred CcEEEEEeCCCcchh-------------hhhhcCCCC--CCCCCeEEEEeeCChh-hhhh---c-C-CceEEcCCCCHHH
Q 038663 257 KKVLIILDDVREKIN-------------LAVSGIPYG--EEGNRCKVIVTSRRLD-VCSK---M-S-DVTVQIEELGEED 315 (385)
Q Consensus 257 kr~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~gs~iivTtr~~~-v~~~---~-~-~~~~~l~~L~~~~ 315 (385)
.+++|+||++..... ...+...+. ....+..||.||.... +-.. . . ...+++...+.++
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~ 376 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHH
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHH
Confidence 789999999864310 111111110 1123455666665543 3111 1 2 6789999999999
Q ss_pred HHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChHH
Q 038663 316 RLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPSA 349 (385)
Q Consensus 316 ~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPla 349 (385)
-.++|+.++... .+.++ ..|++++.|+--|
T Consensus 377 R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfsga 409 (806)
T 3cf2_A 377 RLEILQIHTKNMKLADDVDL----EQVANETHGHVGA 409 (806)
T ss_dssp HHHHHHHTCSSSEECTTCCH----HHHHHHCCSCCHH
T ss_pred HHHHHHHHhcCCCCCcccCH----HHHHHhcCCCCHH
Confidence 999998877443 22233 4477888887543
No 66
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=1.2e-05 Score=73.78 Aligned_cols=142 Identities=11% Similarity=0.118 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhh--CCCCCceEEEEEcCC---HHHHHHHHHHHhcCccc
Q 038663 163 SKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTI--APYDKAHVIVAESSD---LRRIQDKIAELLKFKIE 237 (385)
Q Consensus 163 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~~~~~wv~vs~---~~~l~~~i~~~l~~~~~ 237 (385)
++.++.|...+..+..+++.++|++|+||||+|+.+.+..... .+.+ ..++..++ ..+-.+++.+.+.....
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d---~~~l~~~~~~~~id~ir~li~~~~~~p~ 79 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD---VLEIDPEGENIGIDDIRTIKDFLNYSPE 79 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT---EEEECCSSSCBCHHHHHHHHHHHTSCCS
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC---EEEEcCCcCCCCHHHHHHHHHHHhhccc
Confidence 4456677777776667899999999999999999998863211 1222 23333220 11111222222221000
Q ss_pred cccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCCh-hhhhhcCCceEEcCCCCHH
Q 038663 238 EENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRL-DVCSKMSDVTVQIEELGEE 314 (385)
Q Consensus 238 ~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~-~v~~~~~~~~~~l~~L~~~ 314 (385)
.+ ++-++|+|+++.. ...+.+...+.+....+.+|++|.+. .+...+..+.+++.+++++
T Consensus 80 ---------------~~--~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~ 142 (305)
T 2gno_A 80 ---------------LY--TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPK 142 (305)
T ss_dssp ---------------SS--SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCH
T ss_pred ---------------cC--CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHH
Confidence 12 5678999999754 34444443343334566777666443 3333333229999999999
Q ss_pred HHHHHHHHhh
Q 038663 315 DRLKLFKQIA 324 (385)
Q Consensus 315 ~~~~lf~~~~ 324 (385)
+....+.+..
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 67
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.08 E-value=2.8e-06 Score=76.47 Aligned_cols=169 Identities=14% Similarity=0.229 Sum_probs=88.1
Q ss_pred CCCCcchHHHHHHHHHHhc---c---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHH
Q 038663 156 YVPLESSSKALNSIMKLLK---D---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRR 223 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~ 223 (385)
+..++|.+..++.+.+.+. . ...+.+.|+|++|+|||+||+.+++.... .|- . +..++...
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~~--~---v~~~~~~~ 82 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV--PFF--S---MGGSSFIE 82 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC--CCC--C---CCSCTTTT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CEE--E---echHHHHH
Confidence 3446666655555544332 1 12345789999999999999999997652 222 0 11111100
Q ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch-----------------hhhhhcCCCCC---CC
Q 038663 224 IQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI-----------------NLAVSGIPYGE---EG 283 (385)
Q Consensus 224 l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~-----------------~~~~l~~~~~~---~~ 283 (385)
.... ..... ....+...... +..+|+|||+.... .+..+...+.. ..
T Consensus 83 -------~~~~-~~~~~---~~~~~~~a~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 83 -------MFVG-LGASR---VRDLFETAKKQ--APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp -------SCSS-SCSSS---SSTTHHHHHHS--CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred -------hhcc-hHHHH---HHHHHHHHHhc--CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 0000 00000 01112222233 67899999996431 12222222211 12
Q ss_pred CCeEEEEeeCChhhh--hhc---C-CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCChH
Q 038663 284 NRCKVIVTSRRLDVC--SKM---S-DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLPS 348 (385)
Q Consensus 284 ~gs~iivTtr~~~v~--~~~---~-~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlPl 348 (385)
.+..||.||...... ... . ...+.+.+.+.++..+++...+... ....+ ..|++.+.|+|-
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~~~g~~g 219 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNL----QEVAKLTAGLAG 219 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCT----TTTTSSSCSSCH
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCH----HHHHHHcCCCCH
Confidence 235677777655421 111 2 4678899999999999998877332 11122 236667788764
No 68
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.04 E-value=4.4e-06 Score=67.89 Aligned_cols=46 Identities=22% Similarity=0.156 Sum_probs=35.1
Q ss_pred CCcchHHHHHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 158 PLESSSKALNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+++|++..+..+.+.+. ......+.|+|++|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 36788888888887764 23345678999999999999999998653
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.03 E-value=3.4e-06 Score=75.86 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=33.7
Q ss_pred CCCcchHHHHHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 157 VPLESSSKALNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 157 ~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..++|.+..+..+.+.+. ......+.|+|++|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 457788888777776554 12335778999999999999999998754
No 70
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.91 E-value=3.9e-05 Score=70.41 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=36.0
Q ss_pred CCcchHHHHHHHHHHhcc--CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 158 PLESSSKALNSIMKLLKD--EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++|++..+..+.+.+.. .....+.|+|++|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 367888888887776642 3345678999999999999999998653
No 71
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.81 E-value=6.9e-05 Score=64.14 Aligned_cols=116 Identities=15% Similarity=0.138 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhccC----CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccc
Q 038663 162 SSKALNSIMKLLKDE----KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIE 237 (385)
Q Consensus 162 r~~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~ 237 (385)
+...++.+..++... ....+.|+|++|+|||+||+.+++..... .. ..++++.+ .+...+......
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~--~~~~~~~~---~~~~~~~~~~~~--- 103 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NV--SSLIVYVP---ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TC--CEEEEEHH---HHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CC--eEEEEEhH---HHHHHHHHHhcc---
Confidence 334555566665532 12789999999999999999999987633 22 44555544 233333222111
Q ss_pred cccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhh--hcCCCCCC--CCCeEEEEeeCCh
Q 038663 238 EENELQRRATLAKRLRERTKKVLIILDDVREK--INLAV--SGIPYGEE--GNRCKVIVTSRRL 295 (385)
Q Consensus 238 ~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~--l~~~~~~~--~~gs~iivTtr~~ 295 (385)
... ..+...+.. . -+|||||++.. ..|.. +...+... ..+.++|+||...
T Consensus 104 -~~~----~~~~~~~~~--~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 -QTM----NEKLDYIKK--V-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp -CCC----HHHHHHHHH--S-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred -chH----HHHHHHhcC--C-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 111 122333444 3 39999999642 23221 11111111 2345688888754
No 72
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.77 E-value=0.00015 Score=72.10 Aligned_cols=150 Identities=17% Similarity=0.243 Sum_probs=76.3
Q ss_pred CcchHHHHHHHHHHhc------cCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHH---HHHHHHH
Q 038663 159 LESSSKALNSIMKLLK------DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLR---RIQDKIA 229 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~---~l~~~i~ 229 (385)
++|-++..+.+.+.+. .....++.|+|++|+||||||+.++..... .| .-+.++... .+.....
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~--~~-----~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR--KF-----VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC--EE-----EEECCCC------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC--Ce-----EEEEecccchhhhhhhHHH
Confidence 5666665555544332 224568999999999999999999988742 12 122222211 1111000
Q ss_pred HHhcCccccccHHHHHHHHHHHHHhc-CCcEEEEEeCCCcchh------hhhhcCCCCC--------C-------CCCeE
Q 038663 230 ELLKFKIEEENELQRRATLAKRLRER-TKKVLIILDDVREKIN------LAVSGIPYGE--------E-------GNRCK 287 (385)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~l~~~l~~~-~kr~LlVlDdv~~~~~------~~~l~~~~~~--------~-------~~gs~ 287 (385)
..++ .....+...+... ...-+++||++..... ...+...+.+ . .....
T Consensus 156 ~~ig---------~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~ 226 (543)
T 3m6a_A 156 TYVG---------AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 226 (543)
T ss_dssp -----------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred HHhc---------cCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence 0000 1111122222211 1334888999875321 1222222211 0 03456
Q ss_pred EEEeeCChhh-h-hhcC-CceEEcCCCCHHHHHHHHHHhh
Q 038663 288 VIVTSRRLDV-C-SKMS-DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 288 iivTtr~~~v-~-~~~~-~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
+|.||..... . .... ..++.+.+++.++-..++.+++
T Consensus 227 iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 227 FIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 7777765442 1 1122 4678999999999998888764
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.77 E-value=0.00014 Score=75.29 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=81.2
Q ss_pred CCcchHHHHHHHHHHhcc---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHH
Q 038663 158 PLESSSKALNSIMKLLKD---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKI 228 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i 228 (385)
.++|.+..++.+...+.. .....+.++|++|+|||+||+.+.+..... -. ..+.+..+....
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~--~~i~i~~s~~~~----- 562 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EE--SMIRIDMSEYME----- 562 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TT--CEEEEEGGGGCS-----
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--Cc--ceEEEechhccc-----
Confidence 477888888888777641 122379999999999999999999986321 11 223333331100
Q ss_pred HHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCC-----CC------CCCCeEEEEeeCCh
Q 038663 229 AELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPY-----GE------EGNRCKVIVTSRRL 295 (385)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~-----~~------~~~gs~iivTtr~~ 295 (385)
.... . ...+...++.. ...+|+|||+... ..+..+...+ .. ...+++||+||...
T Consensus 563 ------~~~~-~----~~~l~~~~~~~-~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 563 ------KHST-S----GGQLTEKVRRK-PYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp ------SCCC-C-------CHHHHHHC-SSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ------cccc-c----cchhhHHHHhC-CCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 0000 0 11122233331 4458999999754 2222221111 11 12356889999731
Q ss_pred h-------------h-hhhcC--CceEEcCCCCHHHHHHHHHHhh
Q 038663 296 D-------------V-CSKMS--DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 296 ~-------------v-~~~~~--~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
. . ..... +.++.+.||+.++...++...+
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 1 11122 4789999999999988887755
No 74
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.73 E-value=0.00022 Score=65.01 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++.+.++||+|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346888999999999999999999885
No 75
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.70 E-value=0.0014 Score=58.93 Aligned_cols=172 Identities=16% Similarity=0.221 Sum_probs=88.9
Q ss_pred CCCCCCcchHHHHHHHHHHh---cc---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCH
Q 038663 154 PDYVPLESSSKALNSIMKLL---KD---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDL 221 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~ 221 (385)
..+.+++|.+....++.+.. .. .-.+-+.|+|++|+|||||++.+...... ..+.+...+.
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-------~~i~~~~~~~ 109 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITASGSDF 109 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEEHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-------CEEEecHHHH
Confidence 33455777766555544432 21 01123899999999999999999987651 2222221111
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch------------h----hhhhcCCCCC--CC
Q 038663 222 RRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI------------N----LAVSGIPYGE--EG 283 (385)
Q Consensus 222 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~~--~~ 283 (385)
.. .. .. ........+.+..... ...++++||+.... . ...+...+.. ..
T Consensus 110 ~~-------~~----~~-~~~~~i~~~~~~~~~~-~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 110 VE-------MF----VG-VGAARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp HH-------ST----TT-HHHHHHHHHHHHHHTS-CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred HH-------HH----hh-HHHHHHHHHHHHHHhc-CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 11 00 00 0111122223332221 56899999985320 0 1111111111 11
Q ss_pred CCeEEEEeeCChhhhh---hc--C-CceEEcCCCCHHHHHHHHHHhhCCC-CCcchHHHHHHHHHHhCCCh
Q 038663 284 NRCKVIVTSRRLDVCS---KM--S-DVTVQIEELGEEDRLKLFKQIARLP-DSEAFEGAAKVIVKACGSLP 347 (385)
Q Consensus 284 ~gs~iivTtr~~~v~~---~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~I~~~c~GlP 347 (385)
....++.||....... .. . ...+.+.+.+.++-.+++...+... ..++ .....++..+.|+.
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc--cCHHHHHHHcCCCC
Confidence 2344555666554311 11 2 6688999999999899888776332 1111 11234778888876
No 76
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.68 E-value=0.0015 Score=57.82 Aligned_cols=144 Identities=18% Similarity=0.254 Sum_probs=76.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcE
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKV 259 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~ 259 (385)
-+.|+|++|+|||||++.+...... ..+.+...+... .. .. ........+.+..... ...
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~-------~~i~~~~~~~~~-------~~----~~-~~~~~i~~~~~~~~~~-~~~ 110 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARV-------PFITASGSDFVE-------MF----VG-VGAARVRDLFETAKRH-APC 110 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEEHHHHHH-------SC----TT-HHHHHHHHHHHHHTTS-SSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-------CEEEeeHHHHHH-------HH----hh-HHHHHHHHHHHHHHhc-CCe
Confidence 3899999999999999999987651 122222111110 00 00 0111122222322211 468
Q ss_pred EEEEeCCCcch------------h----hhhhcCCCC--CCCCCeEEEEeeCChhhhh--hc---C-CceEEcCCCCHHH
Q 038663 260 LIILDDVREKI------------N----LAVSGIPYG--EEGNRCKVIVTSRRLDVCS--KM---S-DVTVQIEELGEED 315 (385)
Q Consensus 260 LlVlDdv~~~~------------~----~~~l~~~~~--~~~~gs~iivTtr~~~v~~--~~---~-~~~~~l~~L~~~~ 315 (385)
++++||+.... . ...+...+. .......++.||....... .. . ...+.+.+.+.++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 99999985321 0 111111111 1122345566666655421 11 2 5678999999998
Q ss_pred HHHHHHHhhCCC---CCcchHHHHHHHHHHhCCCh
Q 038663 316 RLKLFKQIARLP---DSEAFEGAAKVIVKACGSLP 347 (385)
Q Consensus 316 ~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlP 347 (385)
-.+++...+... .... ...|++.+.|+-
T Consensus 191 r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 191 REQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred HHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 888888766322 1122 234778888865
No 77
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.68 E-value=8.5e-05 Score=76.95 Aligned_cols=157 Identities=13% Similarity=0.173 Sum_probs=85.6
Q ss_pred CCcchHHHHHHHHHHhcc---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHH
Q 038663 158 PLESSSKALNSIMKLLKD---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKI 228 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i 228 (385)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+.+... . ..+.+..+...+- ..+
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~--~~~~i~~s~~~~~-~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----I--ELLRFDMSEYMER-HTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----C--EEEEEEGGGCSSS-SCC
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----C--CEEEEechhhcch-hhH
Confidence 367888877777766541 1234799999999999999999998873 1 2233333311000 000
Q ss_pred HHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc--hhhhhhcCCCCCC-----------CCCeEEEEeeCCh
Q 038663 229 AELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK--INLAVSGIPYGEE-----------GNRCKVIVTSRRL 295 (385)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~iivTtr~~ 295 (385)
...++.+ +..........+...++.. ...+|+||++... +.+..+...+.++ ..++.||+||...
T Consensus 531 ~~l~g~~-~g~~g~~~~~~l~~~~~~~-~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~ 608 (758)
T 1r6b_X 531 SRLIGAP-PGYVGFDQGGLLTDAVIKH-PHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG 608 (758)
T ss_dssp SSSCCCC-SCSHHHHHTTHHHHHHHHC-SSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSS
T ss_pred hhhcCCC-CCCcCccccchHHHHHHhC-CCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcc
Confidence 0001111 1111111112234444442 5679999999754 2222222211110 1346688888652
Q ss_pred h--------------------------h-hhhcC--CceEEcCCCCHHHHHHHHHHhh
Q 038663 296 D--------------------------V-CSKMS--DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 296 ~--------------------------v-~~~~~--~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
. + ....+ +..+.+.+|+.++...++...+
T Consensus 609 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 609 VRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp CC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 1 0 11122 4679999999999988888765
No 78
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.66 E-value=0.00075 Score=70.16 Aligned_cols=149 Identities=17% Similarity=0.253 Sum_probs=83.4
Q ss_pred CCCCcchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHH
Q 038663 156 YVPLESSSKALNSIMKLLKD-------------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLR 222 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~ 222 (385)
+.++.|.+..++.|.+++.. .....+.|+|++|+||||||+.+...... ..+.+..+
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~-------~~i~v~~~--- 272 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLINGP--- 272 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC-------EEEEEEHH---
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-------cEEEEEch---
Confidence 34577877777777766531 23467999999999999999999886531 11222211
Q ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch----------------hhhhhcCCCCCCCCCe
Q 038663 223 RIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI----------------NLAVSGIPYGEEGNRC 286 (385)
Q Consensus 223 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~~~gs 286 (385)
+ +...............+...... ...++++||+.... .+..+...+. ...+.
T Consensus 273 ~--------l~~~~~g~~~~~l~~vf~~a~~~--~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v 341 (806)
T 1ypw_A 273 E--------IMSKLAGESESNLRKAFEEAEKN--APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHV 341 (806)
T ss_dssp H--------HSSSSTTHHHHHHHHHHHHHHHH--CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCC
T ss_pred H--------hhhhhhhhHHHHHHHHHHHHHhc--CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccE
Confidence 1 11111111112222233333344 78899999985321 1111111111 12344
Q ss_pred EEEEeeCChh-hhhh---c-C-CceEEcCCCCHHHHHHHHHHhhC
Q 038663 287 KVIVTSRRLD-VCSK---M-S-DVTVQIEELGEEDRLKLFKQIAR 325 (385)
Q Consensus 287 ~iivTtr~~~-v~~~---~-~-~~~~~l~~L~~~~~~~lf~~~~~ 325 (385)
.+|.||.... +... . . ...+.+...+.++-.+++...+.
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 5666665532 2111 1 2 46688899999999999988764
No 79
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.57 E-value=0.00032 Score=66.26 Aligned_cols=26 Identities=38% Similarity=0.599 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+.++|++|+|||++|+.+.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998773
No 80
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.57 E-value=0.0029 Score=56.88 Aligned_cols=149 Identities=15% Similarity=0.204 Sum_probs=80.8
Q ss_pred CCCCcchHHHHHHHHHHhc----c---------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHH
Q 038663 156 YVPLESSSKALNSIMKLLK----D---------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLR 222 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~ 222 (385)
..++.|-++..+.|.+.+. . .-.+-+.|+|++|+|||||++.+...... ..+.+..++..
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-------~~i~i~g~~l~ 81 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-------NFISVKGPELL 81 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEEEETTTTC
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-------CEEEEEcHHHH
Confidence 4456677777776665432 1 11233999999999999999999987542 22233322110
Q ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHH-HhcCCcEEEEEeCCCcchh-------------hhhhcCCCC--CCCCCe
Q 038663 223 RIQDKIAELLKFKIEEENELQRRATLAKRL-RERTKKVLIILDDVREKIN-------------LAVSGIPYG--EEGNRC 286 (385)
Q Consensus 223 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~gs 286 (385)
. .. ..........+.+.. .. .++++++|++..... ...+...+. ......
T Consensus 82 ~-----------~~-~~~~~~~i~~vf~~a~~~--~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 82 N-----------MY-VGESERAVRQVFQRAKNS--APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp S-----------ST-THHHHHHHHHHHHHHHHT--CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred h-----------hh-hhHHHHHHHHHHHHHHhc--CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0 00 000111122333332 23 678999999864210 011100111 112344
Q ss_pred EEEEeeCChhhh---hhc--C-CceEEcCCCCHHHHHHHHHHhhC
Q 038663 287 KVIVTSRRLDVC---SKM--S-DVTVQIEELGEEDRLKLFKQIAR 325 (385)
Q Consensus 287 ~iivTtr~~~v~---~~~--~-~~~~~l~~L~~~~~~~lf~~~~~ 325 (385)
-++.+|....+. -.. . ...+.+...+.++-.++|+....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 566677666542 111 2 77889999999999999988763
No 81
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.57 E-value=0.0015 Score=63.75 Aligned_cols=170 Identities=17% Similarity=0.227 Sum_probs=90.7
Q ss_pred CCCCCCcchHHHHHHHHHH---hccC---------CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCH
Q 038663 154 PDYVPLESSSKALNSIMKL---LKDE---------KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDL 221 (385)
Q Consensus 154 ~~~~~~~gr~~~~~~l~~~---L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~ 221 (385)
..+.++.|.+..+..+.+. +... -.+-+.|+|++|+|||+||+.++..... ..+.++.++.
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-------~~i~i~g~~~ 100 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITASGSDF 100 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------CEEEEEGGGG
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEehhHH
Confidence 3445677877665555543 3221 1234899999999999999999987641 2223333221
Q ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHhc--CCcEEEEEeCCCcch----------------hhhhhcCCCC--C
Q 038663 222 RRIQDKIAELLKFKIEEENELQRRATLAKRLRER--TKKVLIILDDVREKI----------------NLAVSGIPYG--E 281 (385)
Q Consensus 222 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~--~kr~LlVlDdv~~~~----------------~~~~l~~~~~--~ 281 (385)
... . .......+...++.. ....++++||+.... ....+...+. .
T Consensus 101 ~~~-----------~----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 101 VEM-----------F----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp TSS-----------C----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred HHh-----------h----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 100 0 001112233333321 135899999995321 0112211111 1
Q ss_pred CCCCeEEEEeeCChhhhh--hc---C-CceEEcCCCCHHHHHHHHHHhhCCC-CCcchHHHHHHHHHHhCCCh
Q 038663 282 EGNRCKVIVTSRRLDVCS--KM---S-DVTVQIEELGEEDRLKLFKQIARLP-DSEAFEGAAKVIVKACGSLP 347 (385)
Q Consensus 282 ~~~gs~iivTtr~~~v~~--~~---~-~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~I~~~c~GlP 347 (385)
...+..++.||....... .. . ...+.+.+.+.++-.+++..++... ..++ .....|+..+.|+.
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS--STTHHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH--HHHHHHHHhcCCCC
Confidence 123455666776665421 11 2 5688999999999999998776322 1111 01233666777765
No 82
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.51 E-value=0.00043 Score=60.18 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=60.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccc-------------------
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIE------------------- 237 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~------------------- 237 (385)
..++.|+|++|+|||||++.+........ . .+.|+... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~--~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDG--D--PCIYVTTEESRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHT--C--CEEEEESSSCHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC--C--eEEEEEcccCHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 46899999999999999999997654321 1 55666666 4444443332 3332110
Q ss_pred -----cccHHHHHHHHHHHHHhc-CCcEEEEEeCCCcch-----hhhhhcCCCCC--CCCCeEEEEeeCCh
Q 038663 238 -----EENELQRRATLAKRLRER-TKKVLIILDDVREKI-----NLAVSGIPYGE--EGNRCKVIVTSRRL 295 (385)
Q Consensus 238 -----~~~~~~~~~~l~~~l~~~-~kr~LlVlDdv~~~~-----~~~~l~~~~~~--~~~gs~iivTtr~~ 295 (385)
..+..+....+.+.+... .+..+||+|+..... ....+...+.. ...|+.||++|+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 013344444455544432 123499999986321 11111111111 12467888888776
No 83
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.43 E-value=0.00011 Score=77.14 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=36.1
Q ss_pred CCcchHHHHHHHHHHhccC---------CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 158 PLESSSKALNSIMKLLKDE---------KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.+.+...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3678888888877766421 225889999999999999999999864
No 84
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.41 E-value=0.00035 Score=61.57 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|++|+|||||++.+...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999843
No 85
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.37 E-value=0.00031 Score=64.28 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEc--CCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhc
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAES--SDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRER 255 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~v--s~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 255 (385)
.+++.|+|++|+|||+||.++... ... .++|++. ... +. ....+.......+.+.+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~G~------~VlyIs~~~eE~----------v~--~~~~~le~~l~~i~~~l~~- 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-LGG------KDKYATVRFGEP----------LS--GYNTDFNVFVDDIARAMLQ- 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-HHT------TSCCEEEEBSCS----------ST--TCBCCHHHHHHHHHHHHHH-
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-CCC------CEEEEEecchhh----------hh--hhhcCHHHHHHHHHHHHhh-
Confidence 357789999999999999999887 211 2234444 211 00 0013345556667777777
Q ss_pred CCcEEEEEeCCCcc
Q 038663 256 TKKVLIILDDVREK 269 (385)
Q Consensus 256 ~kr~LlVlDdv~~~ 269 (385)
.+ +||||++...
T Consensus 183 -~~-LLVIDsI~aL 194 (331)
T 2vhj_A 183 -HR-VIVIDSLKNV 194 (331)
T ss_dssp -CS-EEEEECCTTT
T ss_pred -CC-EEEEeccccc
Confidence 56 9999998643
No 86
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.26 E-value=0.0013 Score=61.46 Aligned_cols=99 Identities=21% Similarity=0.237 Sum_probs=56.8
Q ss_pred HHHHHhcc-CCceEEEEEcCCCCchHHHHHHHHHHhhhh-CCCCCceEEEEEcCCHHHHHHHHHHHhcC----ccccccH
Q 038663 168 SIMKLLKD-EKVNIIGVQGPGGVGKSTLMEQLAKQIDTI-APYDKAHVIVAESSDLRRIQDKIAELLKF----KIEEENE 241 (385)
Q Consensus 168 ~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~~~wv~vs~~~~l~~~i~~~l~~----~~~~~~~ 241 (385)
..++.+.. .....++|+|++|+|||||++.+.+..... ..+ .++++.++...+-..++.+.+.. .....+.
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v---~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~ 239 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC---VLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 239 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTS---EEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCe---eEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCH
Confidence 34454442 344688999999999999999998876433 223 34456777222223334444321 1111111
Q ss_pred H------HHHHHHHHHHHhcCCcEEEEEeCCCcc
Q 038663 242 L------QRRATLAKRLRERTKKVLIILDDVREK 269 (385)
Q Consensus 242 ~------~~~~~l~~~l~~~~kr~LlVlDdv~~~ 269 (385)
. ...-.+-+++.+.++.+||++||+...
T Consensus 240 ~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 240 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 1 112234456655559999999998643
No 87
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.24 E-value=0.0085 Score=55.85 Aligned_cols=84 Identities=18% Similarity=0.252 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccc------cccHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIE------EENELQRRATLA 249 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~ 249 (385)
...++.|+|++|+|||||+.++........ . .++|+... ..... .++.++.... ..+..+....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~g--g--~VlyId~E~s~~~~---ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMG--G--VAAFIDAEHALDPV---YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTT--C--CEEEEESSCCCCHH---HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC--C--eEEEEecccccchH---HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 346999999999999999999998765321 1 56777776 22222 4455554221 123444455555
Q ss_pred HHHHhcCCcEEEEEeCCCc
Q 038663 250 KRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 250 ~~l~~~~kr~LlVlDdv~~ 268 (385)
..++.. +.-++|+|.+..
T Consensus 133 ~l~~~~-~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSG-VVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTS-CCSEEEEECTTT
T ss_pred HHhhhc-CCCeEEehHhhh
Confidence 555532 566899998753
No 88
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.22 E-value=0.0047 Score=57.34 Aligned_cols=159 Identities=11% Similarity=-0.009 Sum_probs=95.6
Q ss_pred HHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHHHHhcCccccccHHHHHHH
Q 038663 171 KLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIAELLKFKIEEENELQRRAT 247 (385)
Q Consensus 171 ~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~~~~~~~~~~~ 247 (385)
+.+.+.-.+++.++|+.|.||++.+..+.+..... .|. ....+.+. +..++...+..
T Consensus 11 ~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~--~~~~~~~~~~~~~~~l~~~~~~----------------- 70 (343)
T 1jr3_D 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFE--EHHTFSIDPNTDWNAIFSLCQA----------------- 70 (343)
T ss_dssp HHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCC--EEEEEECCTTCCHHHHHHHHHH-----------------
T ss_pred HHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCC--eeEEEEecCCCCHHHHHHHhcC-----------------
Confidence 33333445799999999999999999998876532 343 21112222 33332221110
Q ss_pred HHHHHHhcCCcEEEEEeCCCc---chhhhhhcCCCCCCCCCeEEEEeeCC-------hhhhhhc-C-CceEEcCCCCHHH
Q 038663 248 LAKRLRERTKKVLIILDDVRE---KINLAVSGIPYGEEGNRCKVIVTSRR-------LDVCSKM-S-DVTVQIEELGEED 315 (385)
Q Consensus 248 l~~~l~~~~kr~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~iivTtr~-------~~v~~~~-~-~~~~~l~~L~~~~ 315 (385)
.-+-+ ++-++|+|+++. ...++.+...+.+...++.+|+++.. ..+...+ . +..++..+++.++
T Consensus 71 --~plf~--~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~ 146 (343)
T 1jr3_D 71 --MSLFA--SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQ 146 (343)
T ss_dssp --HHHCC--SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTH
T ss_pred --cCCcc--CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHH
Confidence 11223 677888999865 24455554333333446666666532 2233333 3 7889999999999
Q ss_pred HHHHHHHhhCCCCCcchHHHHHHHHHHhCCChHHHHHH
Q 038663 316 RLKLFKQIARLPDSEAFEGAAKVIVKACGSLPSAIAIV 353 (385)
Q Consensus 316 ~~~lf~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 353 (385)
....+.+.+....-.-..+.+..|++.++|.+..+...
T Consensus 147 l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 147 LPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHH
Confidence 99888887632211222366778899999988877653
No 89
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.17 E-value=0.0022 Score=57.16 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=29.8
Q ss_pred HHHHHHHHhccC-C-ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 165 ALNSIMKLLKDE-K-VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 165 ~~~~l~~~L~~~-~-~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...-+..|+... . ...+.|+||+|+|||.+|..+.+..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 445577777654 2 4579999999999999999999863
No 90
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.15 E-value=0.0033 Score=54.94 Aligned_cols=89 Identities=16% Similarity=0.074 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhC----CCCCceEEEEEcCC--HHHHHHHHHHHhcCcc----------cccc
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIA----PYDKAHVIVAESSD--LRRIQDKIAELLKFKI----------EEEN 240 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~~~wv~vs~--~~~l~~~i~~~l~~~~----------~~~~ 240 (385)
...++.|+|++|+|||||+..+........ .-. .++|+.... ...-+..++..++... ...+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~--~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEG--KAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSS--EEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCC--eEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 346999999999999999999987532111 112 677877763 2222334444444321 0111
Q ss_pred HH---HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 241 EL---QRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 241 ~~---~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
.. .....+.+.+... +.-+||||++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~-~~~lliiD~~~~ 130 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVES-RYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHHS-CEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHHhcC-CceEEEEeCchH
Confidence 22 2234455555542 678999999864
No 91
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.13 E-value=0.0014 Score=60.09 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhccC---CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 162 SSKALNSIMKLLKDE---KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 162 r~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+...+..+.+++... ....+.|+|++|+|||+||+.+++...
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 444455555666531 246889999999999999999999876
No 92
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.08 E-value=0.0026 Score=54.70 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=28.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS 219 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs 219 (385)
...++.|+|++|+|||||+..+.. .. -. .++|+...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~----~~--~v~~i~~~ 54 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-LS----GK--KVAYVDTE 54 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HH----CS--EEEEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-Hc----CC--cEEEEECC
Confidence 346999999999999999999988 21 12 67777765
No 93
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.08 E-value=0.00072 Score=58.14 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcc--CCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 164 KALNSIMKLLKD--EKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 164 ~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
..++.|.+.+.. ....+++|+|++|+|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455666666653 45679999999999999999999987663
No 94
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.04 E-value=0.0041 Score=59.83 Aligned_cols=87 Identities=20% Similarity=0.281 Sum_probs=51.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------ccccccH-HH---
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KIEEENE-LQ--- 243 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~~~~~~-~~--- 243 (385)
..++|+|++|+|||||++.+.........+ ..+++.++ ...+++.++...-.. .....+. ..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~---i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~ 228 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGG---ISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRV 228 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCC---CEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCc---EEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHH
Confidence 368999999999999999999876643222 44666676 333444444322000 0011111 11
Q ss_pred --HHHHHHHHHHh-cCCcEEEEEeCCCc
Q 038663 244 --RRATLAKRLRE-RTKKVLIILDDVRE 268 (385)
Q Consensus 244 --~~~~l~~~l~~-~~kr~LlVlDdv~~ 268 (385)
..-.+.+++.+ .+++.||++||+..
T Consensus 229 ~~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 229 ALTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 12245566665 45999999999953
No 95
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.02 E-value=0.0013 Score=67.71 Aligned_cols=168 Identities=13% Similarity=0.176 Sum_probs=79.5
Q ss_pred CCCCcchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHH
Q 038663 156 YVPLESSSKALNSIMKLLKD-------------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLR 222 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~ 222 (385)
...+.|.++..+.|.+.+.- ...+-+.++||+|+|||.||+.+++..... | +.++ ..
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~--f-------~~v~-~~ 545 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--F-------ISIK-GP 545 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE--E-------EECC-HH
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc--e-------EEec-cc
Confidence 34456777777777665431 134568899999999999999999987521 2 1222 11
Q ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcch--------h--------hhhhcCCCC--CCCC
Q 038663 223 RIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREKI--------N--------LAVSGIPYG--EEGN 284 (385)
Q Consensus 223 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~~--------~--------~~~l~~~~~--~~~~ 284 (385)
+++ ..+...+.. ....+.+.-+.. .+++|+||++.... . ...+...+. ....
T Consensus 546 ~l~--------s~~vGese~-~vr~lF~~Ar~~-~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 546 ELL--------TMWFGESEA-NVREIFDKARQA-APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp HHH--------TTTCSSCHH-HHHHHHHHHHTT-CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred hhh--------ccccchHHH-HHHHHHHHHHHc-CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 111 111222222 333344444332 78999999986431 0 111111110 1223
Q ss_pred CeEEEEeeCChhh---hhhc--C-CceEEcCCCCHHHHHHHHHHhhCCC---CCcchHHHHHHHHHHhCCCh
Q 038663 285 RCKVIVTSRRLDV---CSKM--S-DVTVQIEELGEEDRLKLFKQIARLP---DSEAFEGAAKVIVKACGSLP 347 (385)
Q Consensus 285 gs~iivTtr~~~v---~~~~--~-~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~I~~~c~GlP 347 (385)
+.-||.||..... +-.. . +..+.+..-+.++-.++|+.++... .+.++ ..|++.+.|+-
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl----~~la~~t~g~S 683 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFS 683 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC------------------
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHhCCCCC
Confidence 4455656654433 2222 2 6778887777777778887776433 22223 33555666543
No 96
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.02 E-value=0.00017 Score=62.84 Aligned_cols=109 Identities=16% Similarity=0.067 Sum_probs=60.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccccc---cHHHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIEEE---NELQRRATLAKRL 252 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~~~---~~~~~~~~l~~~l 252 (385)
...++.|+|+.|+||||++..+..+..... . .++.+... +.+ -...+++.++...... ...++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g-~---kVli~~~~~d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD-V---KYLVFKPKIDTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-C---CEEEEEECCCGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC-C---EEEEEEeccCch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 457899999999999999999888876432 2 23333333 333 2234455554322221 2223333333333
Q ss_pred HhcCCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCC
Q 038663 253 RERTKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRR 294 (385)
Q Consensus 253 ~~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~ 294 (385)
.+. +.-+|++|++... +..+.+ ..+.+ .|..||+|.+.
T Consensus 86 ~~~-~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 86 FND-ETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLD 125 (223)
T ss_dssp SCT-TCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCS
T ss_pred hCC-CCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecc
Confidence 331 3449999999753 222222 11212 26789999983
No 97
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.00 E-value=0.00088 Score=57.27 Aligned_cols=43 Identities=21% Similarity=0.364 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhcc---CCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 162 SSKALNSIMKLLKD---EKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 162 r~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
|+..++.|.+.+.. ....+++|+|++|+|||||++.+......
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 55667777777653 35679999999999999999999987643
No 98
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.96 E-value=4.6e-05 Score=64.50 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++.|+|+.|+||||++..+..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999977776654
No 99
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.89 E-value=0.00028 Score=56.94 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=32.9
Q ss_pred CCcchHHHHHHHHHHhcc--CCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 158 PLESSSKALNSIMKLLKD--EKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.++|++..+..+.+.+.. .....+.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 467888888777777642 334567899999999999999988754
No 100
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.82 E-value=0.0091 Score=55.49 Aligned_cols=91 Identities=18% Similarity=0.256 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCC--CCceEEEEEcCC---HHHHHHHHHHHhcCccc-------------c
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPY--DKAHVIVAESSD---LRRIQDKIAELLKFKIE-------------E 238 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~~~wv~vs~---~~~l~~~i~~~l~~~~~-------------~ 238 (385)
...++.|+|++|+|||||+.++.........+ .+..++|++... ...+ ..++..++.... .
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l-~~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRL-RDIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH-HHHHHHcCCCHHHHHhceeEeecCCH
Confidence 45699999999999999999998764221100 112678888872 4333 344555543211 1
Q ss_pred ccHHHHHHHHHHHHHhc-CCcEEEEEeCCCc
Q 038663 239 ENELQRRATLAKRLRER-TKKVLIILDDVRE 268 (385)
Q Consensus 239 ~~~~~~~~~l~~~l~~~-~kr~LlVlDdv~~ 268 (385)
.....+...+.+.+... .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 11223344555666541 2677999999853
No 101
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.81 E-value=0.00069 Score=62.97 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=36.2
Q ss_pred CCCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 155 DYVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 155 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+..++|.+..+..+...+.......+.|+|++|+|||+||+.+.+...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 4456889887665554444333344589999999999999999998764
No 102
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.80 E-value=0.011 Score=54.11 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=42.5
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHH
Q 038663 165 ALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAEL 231 (385)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~ 231 (385)
.++.+...+. ...++.|.|.+|+|||||+.++........ . .++|++.. +..++...+...
T Consensus 57 ~LD~~lgGl~--~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~--~vl~~slE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMTYGYK--RRNFVLIAARPSMGKTAFALKQAKNMSDND--D--VVNLHSLEMGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHHSSBC--TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--C--EEEEEESSSCHHHHHHHHHHH
T ss_pred HHHhhcCCCC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--C--eEEEEECCCCHHHHHHHHHHH
Confidence 4455543222 346899999999999999999987754332 4 78888887 666666665543
No 103
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.78 E-value=0.02 Score=52.80 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
....+++|+|+.|+||||+++.+......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999987664
No 104
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.77 E-value=0.011 Score=50.98 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh--hCC-CCCceEEEEEcCC--HHHHHHHHHHHhcCccc-------------c
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT--IAP-YDKAHVIVAESSD--LRRIQDKIAELLKFKIE-------------E 238 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~-F~~~~~~wv~vs~--~~~l~~~i~~~l~~~~~-------------~ 238 (385)
...+++|+|++|+|||||++.+...... ... .. ...+|+.-.+ ...-+..+.+..+.... .
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~-~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLN-GSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCS-CEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCC-CEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 3469999999999999999999874321 111 11 2567776652 12233344444433110 0
Q ss_pred ccHHHHHHHHHHHHH----hcCCcEEEEEeCCCc
Q 038663 239 ENELQRRATLAKRLR----ERTKKVLIILDDVRE 268 (385)
Q Consensus 239 ~~~~~~~~~l~~~l~----~~~kr~LlVlDdv~~ 268 (385)
.........+...+. ...+.-++++|+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 011112333444444 012677999999764
No 105
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.76 E-value=0.0058 Score=56.34 Aligned_cols=91 Identities=20% Similarity=0.274 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCC--CceEEEEEcCC---HHHHHHHHHHHhcCccc----------cccH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYD--KAHVIVAESSD---LRRIQDKIAELLKFKIE----------EENE 241 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~~~wv~vs~---~~~l~~~i~~~l~~~~~----------~~~~ 241 (385)
...++.|+|++|+|||+|+.++.........+. +..++|++... ..++ .++++.++.... ..+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l-~~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERI-ENMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH-HHHHHHhCCCHHHHhccEEEEeCCCH
Confidence 346999999999999999999987643111010 12778888872 4444 345555543221 1112
Q ss_pred H---HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 242 L---QRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 242 ~---~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
. .+...+...++...+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 2 24455666665412678999999864
No 106
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.74 E-value=0.0078 Score=52.58 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=32.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDK 227 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~ 227 (385)
..++.|.|++|+|||||+.++........ . .++|++.. +...+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~--~--~v~~~~~e~~~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMG--E--PGIYVALEEHPVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTT--C--CEEEEESSSCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--C--eEEEEEccCCHHHHHHH
Confidence 46899999999999999988876643221 2 56777776 44444433
No 107
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.73 E-value=0.011 Score=53.91 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=47.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCcc----ccccHHHH-HHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFKI----EEENELQR-RAT 247 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~~----~~~~~~~~-~~~ 247 (385)
...++.|+|++|+||||++..+........ . .+.++... ...+-+....+.++.+. ...+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g-~---kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG-K---SVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT-C---CEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC-C---EEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 457999999999999999999998876431 1 34444443 11122333444444321 11122222 234
Q ss_pred HHHHHHhcCCcEEEEEeCCC
Q 038663 248 LAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 248 l~~~l~~~~kr~LlVlDdv~ 267 (385)
+...+.. +.=++++|..-
T Consensus 179 l~~a~~~--~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALAR--NKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHT--TCSEEEEEECC
T ss_pred HHHHHhc--CCCEEEEECCC
Confidence 4444544 45588889653
No 108
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.72 E-value=0.00095 Score=55.07 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+|.|.|++|+||||+++.+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 109
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.70 E-value=0.00097 Score=55.49 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+|.|+|++|+||||+++.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 110
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.70 E-value=0.00098 Score=55.00 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.+|.|.|++|+||||+++.+ +.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999999 44
No 111
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.68 E-value=0.0039 Score=53.93 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..++|.|.|++|+||+|.|+.+.+.+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 568999999999999999999998764
No 112
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.68 E-value=0.0012 Score=55.38 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988653
No 113
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.67 E-value=0.0012 Score=56.18 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|.|+|++|+||||+++.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998764
No 114
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.66 E-value=0.007 Score=56.39 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccc------cccHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIE------EENELQRRATLA 249 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~ 249 (385)
...++.|+|++|+|||||+.++........ . .++|++.. ..... .++.++.... ..+..+....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g--~--~vlyi~~E~~~~~~---~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG--G--IAAFIDAEHALDPE---YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT--C--CEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC--C--eEEEEECCCCcCHH---HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 356999999999999999999987654321 2 67788877 22222 2445543221 112334444444
Q ss_pred HHHHhcCCcEEEEEeCCCc
Q 038663 250 KRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 250 ~~l~~~~kr~LlVlDdv~~ 268 (385)
..++.. +.-+||+|.+..
T Consensus 133 ~l~~~~-~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSG-ALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTT-CCSEEEEECGGG
T ss_pred HHHhcC-CCCEEEEcChHh
Confidence 444332 567999999754
No 115
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.65 E-value=0.022 Score=51.67 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=48.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCcc----ccccHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFKI----EEENELQRRATLA 249 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~~----~~~~~~~~~~~l~ 249 (385)
..+++++|++|+||||++..+........ . .+.++... ...+.+.......+.+. ...+.........
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g-~---~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l 173 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG-F---KVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV 173 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT-C---CEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC-C---eEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHH
Confidence 57999999999999999999998876431 1 44555554 22233344444444321 1123334444444
Q ss_pred HHHHhcCCcE-EEEEeCC
Q 038663 250 KRLRERTKKV-LIILDDV 266 (385)
Q Consensus 250 ~~l~~~~kr~-LlVlDdv 266 (385)
+.++. +.| ++++|-.
T Consensus 174 ~~~~~--~~~D~ViIDTp 189 (297)
T 1j8m_F 174 EKFLS--EKMEIIIVDTA 189 (297)
T ss_dssp HHHHH--TTCSEEEEECC
T ss_pred HHHHh--CCCCEEEEeCC
Confidence 45543 233 6778854
No 116
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.65 E-value=0.0013 Score=56.04 Aligned_cols=29 Identities=41% Similarity=0.462 Sum_probs=25.7
Q ss_pred cCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 175 DEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 175 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.....+|+|+|++|+|||||++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999998876
No 117
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.62 E-value=0.0011 Score=54.86 Aligned_cols=25 Identities=48% Similarity=0.620 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+|+|+|++|+|||||++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998754
No 118
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.61 E-value=0.032 Score=53.44 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=25.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
..++|.++|.+|+||||++..+...+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999887654
No 119
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.61 E-value=0.0014 Score=55.82 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
....+++|+|++|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998876
No 120
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.61 E-value=0.0012 Score=55.55 Aligned_cols=25 Identities=44% Similarity=0.520 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999865
No 121
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.59 E-value=0.00034 Score=65.45 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=61.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRERT 256 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 256 (385)
...+++|+|+.|+|||||++.+........ . ..++.+.-. ..-........+...............+...|..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~-~~i~t~ed~-~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~-- 195 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--Y-HHILTIEDP-IEFVHESKKCLVNQREVHRDTLGFSEALRSALRE-- 195 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHC--C-CEEEEEESS-CCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTS--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCC--C-cEEEEccCc-HHhhhhccccceeeeeeccccCCHHHHHHHHhhh--
Confidence 345999999999999999999987755321 1 022222111 0000000000000000000112234467777777
Q ss_pred CcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhhhh
Q 038663 257 KKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDVCS 299 (385)
Q Consensus 257 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v~~ 299 (385)
.+=+|++|++.+.+.+..+... ...|..|++|+...+...
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHHH
T ss_pred CcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHHH
Confidence 8889999999876655543222 123556899998877543
No 122
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.59 E-value=0.0016 Score=60.23 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=36.9
Q ss_pred CCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 158 PLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 158 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++|++..++.+...+..+ ..+.++|++|+|||+||+.+.+...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3778888888888777654 4788999999999999999998764
No 123
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.58 E-value=0.01 Score=54.07 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=51.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCcccc------ccHHHH-HHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIEE------ENELQR-RATLAKR 251 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~~------~~~~~~-~~~l~~~ 251 (385)
++.|+|++|+|||||+.++....... +.+..++|++.. +.... .++.++...+. .+.++. .. +.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~--g~g~~vlyId~E~s~~~~---ra~~lGvd~d~llv~~~~~~E~~~l~-i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ--YPDAVCLFYDSEFGITPA---YLRSMGVDPERVIHTPVQSLEQLRID-MVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH--CTTCEEEEEESSCCCCHH---HHHHTTCCGGGEEEEECSBHHHHHHH-HHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc--CCCceEEEEeccchhhHH---HHHHhCCCHHHeEEEcCCCHHHHHHH-HHHH
Confidence 78999999999999999988775532 112277888877 33221 36666653321 133333 22 2233
Q ss_pred H---HhcCCcEEEEEeCCCcc
Q 038663 252 L---RERTKKVLIILDDVREK 269 (385)
Q Consensus 252 l---~~~~kr~LlVlDdv~~~ 269 (385)
+ +.. +.-+||+|-+...
T Consensus 104 l~~i~~~-~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERG-EKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTT-CCEEEEEECSTTC
T ss_pred HHHhhcc-CceEEEEeccccc
Confidence 3 332 6789999988643
No 124
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.58 E-value=0.0088 Score=56.05 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccc------cccHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIE------EENELQRRATLA 249 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~ 249 (385)
...++.|+|++|+||||||.++........ . .++|++.. ....+ .+..++.+.. ..+..+....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g--~--~vlyi~~E~s~~~~---~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG--G--TCAFIDAEHALDPV---YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT--C--CEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC--C--eEEEEECCCChhHH---HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 346899999999999999999987754321 2 67888887 33332 2444543221 123344555555
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 038663 250 KRLRERTKKVLIILDDVR 267 (385)
Q Consensus 250 ~~l~~~~kr~LlVlDdv~ 267 (385)
..++.. +.-+||+|.+.
T Consensus 146 ~l~~~~-~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSG-AIDVVVVDSVA 162 (366)
T ss_dssp HHHTTT-CCSEEEEECTT
T ss_pred HHHhcC-CCCEEEEeChH
Confidence 555442 55689999875
No 125
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.56 E-value=0.011 Score=55.29 Aligned_cols=83 Identities=22% Similarity=0.247 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccc------cccHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIE------EENELQRRATLA 249 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~ 249 (385)
...++.|+|++|+||||||.++........ . .++|++.. ..... .+..++.... ..+..+....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~--~vlyid~E~s~~~~---~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--K--TCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--C--CEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--C--eEEEEeCCCCccHH---HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346999999999999999999987764321 2 67788876 22222 2444543221 112333444444
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 038663 250 KRLRERTKKVLIILDDVR 267 (385)
Q Consensus 250 ~~l~~~~kr~LlVlDdv~ 267 (385)
...+.. +.-+||+|.+.
T Consensus 135 ~l~~~~-~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSG-AVDVIVVDSVA 151 (356)
T ss_dssp HHHHHT-CCSEEEEECGG
T ss_pred HHHhcc-CCCEEEEcCHH
Confidence 444432 55689999975
No 126
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.55 E-value=0.0042 Score=58.06 Aligned_cols=99 Identities=20% Similarity=0.177 Sum_probs=57.0
Q ss_pred HHHHHHhcc-CCceEEEEEcCCCCchHHHHHHHHHHhhhh-CCCCCceEEEEEcC-CHHHHHHHHHHHhcC----ccccc
Q 038663 167 NSIMKLLKD-EKVNIIGVQGPGGVGKSTLMEQLAKQIDTI-APYDKAHVIVAESS-DLRRIQDKIAELLKF----KIEEE 239 (385)
Q Consensus 167 ~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~----~~~~~ 239 (385)
-..++.+.. ....-++|+|++|+|||+|+..+.+..... ..+ .++++.++ ..++ ..++.+.+.. .....
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv---~~V~~lIGER~~E-V~d~~~~~~G~VV~atade 238 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDT---IRIILLIDERPEE-VTDIRESTNAIVIAAPFDM 238 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTS---EEEEEECSCCHHH-HSSSSSSCCSEEEECCTTS
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCe---EEEEEEeccCcch-HHHHHHHhCCeEEEECCCC
Confidence 345566653 334578999999999999999999876532 223 33567777 2222 2222222211 11111
Q ss_pred cHH------HHHHHHHHHHHhcCCcEEEEEeCCCcc
Q 038663 240 NEL------QRRATLAKRLRERTKKVLIILDDVREK 269 (385)
Q Consensus 240 ~~~------~~~~~l~~~l~~~~kr~LlVlDdv~~~ 269 (385)
+.. ...-.+-+++.+.++.+||++||+...
T Consensus 239 p~~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~ 274 (427)
T 3l0o_A 239 PPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRL 274 (427)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEecccchHH
Confidence 111 122344566665559999999998643
No 127
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.53 E-value=0.0016 Score=54.55 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+.|.|+|++|+||||+++.+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 128
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.52 E-value=0.0016 Score=54.13 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
.+|.|.|++|+||||+++.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 129
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.52 E-value=0.021 Score=54.96 Aligned_cols=97 Identities=23% Similarity=0.314 Sum_probs=61.0
Q ss_pred HHHHhcc-CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCc--------
Q 038663 169 IMKLLKD-EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFK-------- 235 (385)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~-------- 235 (385)
.++.|.. ....-++|+|.+|+|||+|+..+.+.... .+-+ .++++.++ ...++++++...-...
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~--v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGG--YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSS--EEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCC--EEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 4455542 23457899999999999999999987532 2234 66777777 4555666665542111
Q ss_pred -----cccccH------HHHHHHHHHHHHh-cCCcEEEEEeCCCc
Q 038663 236 -----IEEENE------LQRRATLAKRLRE-RTKKVLIILDDVRE 268 (385)
Q Consensus 236 -----~~~~~~------~~~~~~l~~~l~~-~~kr~LlVlDdv~~ 268 (385)
....+. ....-.+-+++++ .++.+||++||+..
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 111111 1123456677777 56999999999853
No 130
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.52 E-value=0.0023 Score=51.92 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
....+.|+|+.|+|||||++.++.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5568999999999999999999998754
No 131
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.51 E-value=0.0016 Score=55.45 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 132
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.50 E-value=0.013 Score=55.57 Aligned_cols=89 Identities=20% Similarity=0.166 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhh---C-CCCCceEEEEEcCC--HHHHHHHHHHHhcCccc----------ccc
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTI---A-PYDKAHVIVAESSD--LRRIQDKIAELLKFKIE----------EEN 240 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~F~~~~~~wv~vs~--~~~l~~~i~~~l~~~~~----------~~~ 240 (385)
...++.|+|++|+|||||++.+.-..... . .-. .++|++... ...-+..+++.++.... ..+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~--~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEG--KCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSS--EEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCC--cEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 34699999999999999999876432210 0 112 677887762 12223445565553211 011
Q ss_pred H---HHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 241 E---LQRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 241 ~---~~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
. ......+.+.+... +.-+||+|.+..
T Consensus 255 ~~~~~~~l~~~~~~l~~~-~~~llVIDs~t~ 284 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSES-RFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHHS-CEEEEEEETGGG
T ss_pred hHHHHHHHHHHHHHHHhc-CCceEEecchhh
Confidence 1 22334444455443 678899998753
No 133
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.49 E-value=0.032 Score=53.40 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...+|.++|++|+||||++..+...+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999987764
No 134
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.49 E-value=0.0028 Score=59.35 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=35.1
Q ss_pred CcchHHHHHHHHHHhc-------------c--CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 159 LESSSKALNSIMKLLK-------------D--EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~-------------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
++|.+..++.+...+. . .....+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5677777777777662 1 1346789999999999999999998874
No 135
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.49 E-value=0.0022 Score=53.84 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
....+|.|.|++|+||||+++.+......
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34578999999999999999999998764
No 136
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.48 E-value=0.0017 Score=54.52 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
.+|.|.|++|+||||+++.+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998763
No 137
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.48 E-value=0.0018 Score=55.56 Aligned_cols=27 Identities=37% Similarity=0.574 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+++|+||+|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999998754
No 138
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.47 E-value=0.013 Score=53.77 Aligned_cols=91 Identities=15% Similarity=0.226 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhC---------CCC---CceEEEEEcC-C--HHHHHHHHHHHhcCccc----
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIA---------PYD---KAHVIVAESS-D--LRRIQDKIAELLKFKIE---- 237 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~F~---~~~~~wv~vs-~--~~~l~~~i~~~l~~~~~---- 237 (385)
...++.|+|++|+|||+|+.++........ ... +..++|++.. . ..++. +++..++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhc
Confidence 346999999999999999999987632100 010 0277888887 3 44444 44555543221
Q ss_pred ------cccHH---HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 238 ------EENEL---QRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 238 ------~~~~~---~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
..+.. .+...+.+.+....+.-+||+|.+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 01122 23445556665412567999999853
No 139
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.47 E-value=0.002 Score=53.99 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=21.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++|+|+.|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998765
No 140
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.47 E-value=0.0015 Score=55.60 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|.|.|++|+||||+++.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 141
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.46 E-value=0.0015 Score=54.99 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
++++|+||.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998754
No 142
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.44 E-value=0.002 Score=54.10 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+|.|.|++|+||||+++.+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999775
No 143
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.43 E-value=0.029 Score=51.78 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=42.2
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHH
Q 038663 165 ALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAEL 231 (385)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~ 231 (385)
.++.+...+. ...++.|.|.+|+|||||+..+....... +..++|++.. +...+...++..
T Consensus 35 ~LD~~~gGl~--~G~LiiIaG~pG~GKTt~al~ia~~~a~~----g~~Vl~fSlEms~~ql~~Rlls~ 96 (338)
T 4a1f_A 35 QLDNYTSGFN--KGSLVIIGARPSMGKTSLMMNMVLSALND----DRGVAVFSLEMSAEQLALRALSD 96 (338)
T ss_dssp HHHHHHCSBC--TTCEEEEEECTTSCHHHHHHHHHHHHHHT----TCEEEEEESSSCHHHHHHHHHHH
T ss_pred HHHHHhcCCC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCCCCHHHHHHHHHHH
Confidence 4455543333 23589999999999999999999876542 1267788887 666666665443
No 144
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.42 E-value=0.011 Score=57.13 Aligned_cols=95 Identities=22% Similarity=0.293 Sum_probs=60.7
Q ss_pred HHHhcc-CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcCc---------
Q 038663 170 MKLLKD-EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKFK--------- 235 (385)
Q Consensus 170 ~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~~--------- 235 (385)
++.|.. ....-++|+|.+|+|||+|+..+.+.... .+-+ .++++.++ ...++..++...-...
T Consensus 156 ID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~--v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 156 VNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGG--VSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp HHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSS--CEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred eeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCC--EEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 444442 23457899999999999999999987542 2234 66777777 5556666665431111
Q ss_pred -----cccccH------HHHHHHHHHHHHh-cCCcEEEEEeCCC
Q 038663 236 -----IEEENE------LQRRATLAKRLRE-RTKKVLIILDDVR 267 (385)
Q Consensus 236 -----~~~~~~------~~~~~~l~~~l~~-~~kr~LlVlDdv~ 267 (385)
....+. ....-.+-+++++ .++.+||++||+.
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 011111 1223456678887 5799999999985
No 145
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.42 E-value=0.022 Score=54.29 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...++.|+|++|+||||++..+......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999988764
No 146
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.41 E-value=0.0023 Score=53.04 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
..+++|+|++|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 147
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.41 E-value=0.0017 Score=55.48 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..++|.|+|++|+|||||++.+.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999998763
No 148
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.41 E-value=0.0021 Score=54.06 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|.|.|++|+||||+++.+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 149
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.41 E-value=0.012 Score=53.52 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...+++|+|++|+||||++..+......
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999988764
No 150
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.40 E-value=0.0037 Score=56.69 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
....+|+|+|++|+|||||++.+...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45679999999999999999999987754
No 151
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.39 E-value=0.002 Score=53.76 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++|.|+|++|+||||+++.+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 152
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.38 E-value=0.0019 Score=55.07 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.++++|+||+|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3588999999999999999998765
No 153
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.37 E-value=0.00096 Score=69.35 Aligned_cols=150 Identities=15% Similarity=0.194 Sum_probs=80.1
Q ss_pred CCCCcchHHHHHHHHHHhcc-------------CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHH
Q 038663 156 YVPLESSSKALNSIMKLLKD-------------EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLR 222 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~ 222 (385)
...+.|.+...+.|.+.+.- ...+.+.++|++|+|||+||+.+...... .|- . +..+++.
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~--~~i--~---v~~~~l~ 548 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--NFI--S---IKGPELL 548 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC--CCC--C---CCCSSST
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC--CEE--E---EechHhh
Confidence 34456666666666665531 13457899999999999999999998752 232 0 1111100
Q ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEeCCCcc----------------hhhhhhcCCCCC--CCC
Q 038663 223 RIQDKIAELLKFKIEEENELQRRATLAKRLRERTKKVLIILDDVREK----------------INLAVSGIPYGE--EGN 284 (385)
Q Consensus 223 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~kr~LlVlDdv~~~----------------~~~~~l~~~~~~--~~~ 284 (385)
......... ....+.+..+.. ...+|+||++... .....+...+.. ...
T Consensus 549 -----------~~~~g~~~~-~i~~~f~~a~~~-~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~ 615 (806)
T 1ypw_A 549 -----------TMWFGESEA-NVREIFDKARQA-APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp -----------TCCTTTSSH-HHHHHHHHHHHH-CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------
T ss_pred -----------hhhcCccHH-HHHHHHHHHHhc-CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccC
Confidence 000011111 122233333221 5678999998642 012233333322 122
Q ss_pred CeEEEEeeCChh-hhhh-c---C-CceEEcCCCCHHHHHHHHHHhhC
Q 038663 285 RCKVIVTSRRLD-VCSK-M---S-DVTVQIEELGEEDRLKLFKQIAR 325 (385)
Q Consensus 285 gs~iivTtr~~~-v~~~-~---~-~~~~~l~~L~~~~~~~lf~~~~~ 325 (385)
+..||.||.... +... + . ...+.+.+.+.++-..+++.++.
T Consensus 616 ~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred CeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 445666665433 2111 1 2 45777888888888899888763
No 154
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.37 E-value=0.002 Score=53.49 Aligned_cols=25 Identities=48% Similarity=0.505 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
++|.|.|++|+||||+++.+.+.+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998765
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.36 E-value=0.0023 Score=56.89 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+++.|+|++|+||||||+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998754
No 156
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.36 E-value=0.0024 Score=54.71 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+++|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998755
No 157
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.34 E-value=0.0019 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.3
Q ss_pred CceEEEEEcCCCCchHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQL 198 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v 198 (385)
...+++|+|++|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999999953
No 158
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.32 E-value=0.0024 Score=54.19 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.|+|.|+.|+||||+++.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 159
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.32 E-value=0.0024 Score=54.41 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
..+++|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 160
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.32 E-value=0.0041 Score=53.75 Aligned_cols=39 Identities=28% Similarity=0.387 Sum_probs=30.1
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 165 ALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+.+...+.......|+|+|.+|+|||||+..+.....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344555555455678999999999999999999988754
No 161
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.31 E-value=0.0024 Score=53.76 Aligned_cols=22 Identities=45% Similarity=0.715 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999976
No 162
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.31 E-value=0.0027 Score=54.04 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..++++|+||+|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457999999999999999999997654
No 163
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.30 E-value=0.0028 Score=52.21 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|.|.|+.|+||||+++.+.+.+.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999999998765
No 164
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.30 E-value=0.0022 Score=54.06 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+.|.|+||+|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588999999999999999987754
No 165
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.29 E-value=0.02 Score=53.36 Aligned_cols=92 Identities=18% Similarity=0.223 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhC---CCCCceEEEEEcCCH--HHHHHHHHHHhcCcc---------c----c
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIA---PYDKAHVIVAESSDL--RRIQDKIAELLKFKI---------E----E 238 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~~~wv~vs~~--~~l~~~i~~~l~~~~---------~----~ 238 (385)
...++.|+|++|+|||||++++........ ... +.++|++..+. .+-+..+++..+... . .
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~-G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLN-GSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCS-CEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCC-CeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 457999999999999999999997652110 011 14577776621 222333444433210 0 0
Q ss_pred ccHHHHHHHHHHHHHhc----CCcEEEEEeCCCcc
Q 038663 239 ENELQRRATLAKRLRER----TKKVLIILDDVREK 269 (385)
Q Consensus 239 ~~~~~~~~~l~~~l~~~----~kr~LlVlDdv~~~ 269 (385)
.....+...+...+... .+.-+||+|.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 11223344455555431 26889999998643
No 166
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.29 E-value=0.031 Score=53.45 Aligned_cols=28 Identities=32% Similarity=0.255 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...++.++|++|+||||++..+...+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3679999999999999999999987764
No 167
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.28 E-value=0.0028 Score=55.88 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+++|+|++|+|||||++.+.+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999999998764
No 168
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.28 E-value=0.0026 Score=55.08 Aligned_cols=25 Identities=36% Similarity=0.761 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+|+|+|++|+||||+++.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987653
No 169
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.27 E-value=0.003 Score=53.13 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|.|.|++|+||||+++.+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988654
No 170
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.26 E-value=0.0025 Score=54.59 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...+++|+|+.|+|||||++.+....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34699999999999999999998765
No 171
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.25 E-value=0.0032 Score=53.75 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
..+|.|.|++|+||||+++.+.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 358999999999999999999998763
No 172
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.25 E-value=0.021 Score=49.84 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKI 228 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i 228 (385)
..++.|.|++|+|||+|+.++..+..... -. .+++++.. +...+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~--~v~~~s~E~~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GE--PGVFVTLEERARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-CC--CEEEEESSSCHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-CC--CceeecccCCHHHHHHHH
Confidence 46899999999999999998765432211 12 56677776 666665554
No 173
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.24 E-value=0.0033 Score=52.61 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...|.|.|++|+||||+++.+.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998654
No 174
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.24 E-value=0.0029 Score=53.33 Aligned_cols=27 Identities=41% Similarity=0.511 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|.|.|++|+||||+++.+.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998764
No 175
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.23 E-value=0.002 Score=62.94 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=36.4
Q ss_pred CcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 159 LESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
++|++..++.+...+..+ ..+.|+|++|+|||+||+.+.+...
T Consensus 24 ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 778888888887777654 4788999999999999999998764
No 176
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.22 E-value=0.0037 Score=53.82 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 161 SSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 161 gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+..+..+.+...+......+++|+|.+|+|||||+..+.....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344555555555555678999999999999999999988754
No 177
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.22 E-value=0.0064 Score=56.40 Aligned_cols=41 Identities=32% Similarity=0.490 Sum_probs=30.4
Q ss_pred HHHHHHHHHHh----ccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 163 SKALNSIMKLL----KDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 163 ~~~~~~l~~~L----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+...+.+.+.+ ..+....|.|+|++|+||||+++.+.....
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34445555544 345566799999999999999999988754
No 178
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.21 E-value=0.0026 Score=53.24 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+|.|.|++|+||||+++.+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998765
No 179
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.20 E-value=0.0039 Score=51.65 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
..+++.|+|+.|+|||||+..+...+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 3578999999999999999999998764
No 180
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.20 E-value=0.0034 Score=53.42 Aligned_cols=27 Identities=41% Similarity=0.530 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|.|.|+.|+||||+++.+.+...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999987653
No 181
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.18 E-value=0.0059 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...+|.|.|++|+||||+++.+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 182
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.17 E-value=0.003 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+|.|.|++|+||||+++.+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 183
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.17 E-value=0.0032 Score=53.21 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|.|.|++|+||||+++.+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998764
No 184
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.17 E-value=0.0026 Score=55.11 Aligned_cols=26 Identities=35% Similarity=0.679 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
No 185
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.16 E-value=0.0035 Score=52.61 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+|.|+|++|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999986
No 186
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.16 E-value=0.046 Score=52.61 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=41.6
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHH
Q 038663 165 ALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAE 230 (385)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~ 230 (385)
.++.+...+. ...++.|.|++|+|||||+..+......... . .++|++.. +...+...++.
T Consensus 189 ~LD~~lgGl~--~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~--~vl~~slE~~~~~l~~R~~~ 250 (444)
T 2q6t_A 189 ELDQLIGTLG--PGSLNIIAARPAMGKTAFALTIAQNAALKEG-V--GVGIYSLEMPAAQLTLRMMC 250 (444)
T ss_dssp HHHHHHCCCC--TTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-C--CEEEEESSSCHHHHHHHHHH
T ss_pred hhhhhcCCcC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-C--eEEEEECCCCHHHHHHHHHH
Confidence 3455443232 2358999999999999999999987653211 2 57778777 66666666553
No 187
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.15 E-value=0.0035 Score=51.35 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
....+++|+|+.|+|||||++.+....
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445699999999999999999999876
No 188
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.14 E-value=0.039 Score=53.09 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=40.4
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHH
Q 038663 165 ALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAE 230 (385)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~ 230 (385)
.++.+...+. ...++.|.|.+|+|||||+.++........ . .+++++.. +...+...+..
T Consensus 186 ~LD~~lgGl~--~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~--~vl~fSlEms~~ql~~R~~~ 246 (444)
T 3bgw_A 186 ELDRMTYGYK--RRNFVLIAARPSMGKTAFALKQAKNMSDND--D--VVNLHSLEMGKKENIKRLIV 246 (444)
T ss_dssp HHHHHHSSBC--SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--C--EEEEECSSSCTTHHHHHHHH
T ss_pred HHHhhcCCCC--CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--C--EEEEEECCCCHHHHHHHHHH
Confidence 4455543332 345899999999999999999998765431 2 67777776 55555555443
No 189
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.14 E-value=0.0024 Score=53.22 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|.|.|++|+||||+++.+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988754
No 190
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.12 E-value=0.0036 Score=53.08 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHH
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.+..+|+|+|+.|+||||+++.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999999875
No 191
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.12 E-value=0.0043 Score=52.73 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|.|.|++|+||||+++.+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999998764
No 192
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.10 E-value=0.004 Score=55.22 Aligned_cols=27 Identities=41% Similarity=0.720 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|+|+|+.|+||||+++.+.+.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346999999999999999999997654
No 193
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.10 E-value=0.0035 Score=54.38 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+++|+||+|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 456999999999999999999988654
No 194
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.10 E-value=0.0042 Score=56.92 Aligned_cols=29 Identities=38% Similarity=0.390 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
....+++|+|+.|+|||||++.+......
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34679999999999999999999987653
No 195
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.07 E-value=0.05 Score=49.27 Aligned_cols=84 Identities=19% Similarity=0.206 Sum_probs=47.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC--C--HHHHHHHHHHHhcCccc----cccHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS--D--LRRIQDKIAELLKFKIE----EENELQRRATL 248 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs--~--~~~l~~~i~~~l~~~~~----~~~~~~~~~~l 248 (385)
...+++|+|++|+||||++..++....... . .+.++... . ....+.......+...- ..+..++....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~-~---~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~ 172 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG-R---RPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 172 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT-C---CEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-C---eEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHH
Confidence 357999999999999999999998876431 1 44555554 1 11223334444443211 12333343333
Q ss_pred HHHH-HhcCCcEEEEEeCC
Q 038663 249 AKRL-RERTKKVLIILDDV 266 (385)
Q Consensus 249 ~~~l-~~~~kr~LlVlDdv 266 (385)
...+ .. +.=++++|.-
T Consensus 173 l~~~~~~--~~D~viiDtp 189 (295)
T 1ls1_A 173 EEKARLE--ARDLILVDTA 189 (295)
T ss_dssp HHHHHHH--TCCEEEEECC
T ss_pred HHHHHhC--CCCEEEEeCC
Confidence 3333 34 4557888975
No 196
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.07 E-value=0.0033 Score=53.50 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4789999999999999999987
No 197
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.06 E-value=0.012 Score=56.13 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=58.1
Q ss_pred HHHHhcc-CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHH--hcC-----cc
Q 038663 169 IMKLLKD-EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAEL--LKF-----KI 236 (385)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~--l~~-----~~ 236 (385)
.++.|.. ....-++|.|.+|+|||+|+..+.+.....+.-.+..++++.++ ...++...+... +.. ..
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~at 220 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNL 220 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEEC
Confidence 3454442 12335689999999999999999987654211222255566666 455555555443 111 11
Q ss_pred ccccHH------HHHHHHHHHHHh-cCCcEEEEEeCCCc
Q 038663 237 EEENEL------QRRATLAKRLRE-RTKKVLIILDDVRE 268 (385)
Q Consensus 237 ~~~~~~------~~~~~l~~~l~~-~~kr~LlVlDdv~~ 268 (385)
...+.. ...-.+-+++++ .++.+||++||+..
T Consensus 221 sd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 221 ANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 111111 123456778875 35999999999853
No 198
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.05 E-value=0.047 Score=52.67 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=40.3
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHH
Q 038663 165 ALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIA 229 (385)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~ 229 (385)
.++.+...+. ...++.|.|++|+|||||+..+......... . .++|++.. +...+...+.
T Consensus 192 ~LD~~~gGl~--~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~--~Vl~~s~E~s~~~l~~r~~ 252 (454)
T 2r6a_A 192 ELDRMTSGFQ--RSDLIIVAARPSVGKTAFALNIAQNVATKTN-E--NVAIFSLEMSAQQLVMRML 252 (454)
T ss_dssp HHHHHHSSBC--TTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-C--CEEEEESSSCHHHHHHHHH
T ss_pred HHHhhcCCCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-C--cEEEEECCCCHHHHHHHHH
Confidence 4455543232 3458999999999999999999987654321 1 56777776 5555555543
No 199
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.05 E-value=0.0043 Score=53.60 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...|.|.|++|+||||+++.+.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998764
No 200
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.05 E-value=0.0039 Score=52.27 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|.|.|++|+||||+++.+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998754
No 201
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.04 E-value=0.0073 Score=51.44 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=29.9
Q ss_pred HHHHHHHHHhccC-CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 164 KALNSIMKLLKDE-KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 164 ~~~~~l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+..+..++.+- ....+.|+||+|+||||+|..+.+...
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455566666541 234799999999999999999998875
No 202
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.03 E-value=0.0045 Score=56.50 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...+++|+|++|+|||||++.+......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999977653
No 203
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.03 E-value=0.0042 Score=53.08 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=25.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYD 209 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 209 (385)
..+|+|.|+.|+||||+++.+.+.+... +++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~ 40 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVE 40 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCc
Confidence 4689999999999999999999987642 454
No 204
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.02 E-value=0.0049 Score=54.32 Aligned_cols=26 Identities=35% Similarity=0.555 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998865
No 205
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.00 E-value=0.0047 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.|.|.|++|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998765
No 206
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.99 E-value=0.0045 Score=53.00 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
..+|+|.|+.|+||||+++.+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999998764
No 207
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.98 E-value=0.0047 Score=54.97 Aligned_cols=26 Identities=42% Similarity=0.586 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|.|.|++|+||||+++.+.+.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 208
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.98 E-value=0.0046 Score=51.91 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+|+|.|+.|+||||+++.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 209
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.97 E-value=0.0043 Score=52.98 Aligned_cols=26 Identities=42% Similarity=0.655 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...+|+|+|++|+|||||++.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998754
No 210
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=95.96 E-value=0.018 Score=55.33 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=58.1
Q ss_pred HHHHhcc-CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------cc
Q 038663 169 IMKLLKD-EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------KI 236 (385)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~~ 236 (385)
.++.|.. ....-++|.|.+|+|||+|+..+.+.....+.-++..++++.++ ...++..++...-.. ..
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 3455542 22345688999999999999999988664221111156666666 455556555543111 11
Q ss_pred ccccH------HHHHHHHHHHHH-hcCCcEEEEEeCCC
Q 038663 237 EEENE------LQRRATLAKRLR-ERTKKVLIILDDVR 267 (385)
Q Consensus 237 ~~~~~------~~~~~~l~~~l~-~~~kr~LlVlDdv~ 267 (385)
...+. ....-.+-++++ +.++.+||++||+.
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 11111 112334567777 34599999999974
No 211
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.95 E-value=0.0079 Score=55.24 Aligned_cols=27 Identities=37% Similarity=0.443 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+++|.|++|+|||||++.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999988765
No 212
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.95 E-value=0.0044 Score=52.39 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+++|+|+.|+|||||++.+.....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998765
No 213
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.92 E-value=0.0044 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 214
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.92 E-value=0.0045 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
...+++|+|+.|+|||||++.+.-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 456999999999999999999884
No 215
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.92 E-value=0.0044 Score=53.62 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...|.|.|++|+||||+++.+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998765
No 216
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.91 E-value=0.0069 Score=53.65 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|.|+|++|+||||+++.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999998764
No 217
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.91 E-value=0.0043 Score=53.88 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...|.|.|++|+||||+++.+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998653
No 218
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.91 E-value=0.011 Score=51.92 Aligned_cols=28 Identities=25% Similarity=0.111 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.....|.|.|++|+||||+++.+.+...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999998753
No 219
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.90 E-value=0.0047 Score=54.33 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHH
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.. .+++|+|+.|+|||||.+.+.--
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 79999999999999999999853
No 220
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.89 E-value=0.0024 Score=54.73 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+|+|.|+.|+||||+++.+...+.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998875
No 221
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.87 E-value=0.0053 Score=52.72 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.3
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.|.|.|++|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 222
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.85 E-value=0.018 Score=64.59 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccc------cccHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIE------EENELQRRATLA 249 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~ 249 (385)
..+++.|+||+|+|||+||.++........ . .++++.+. ....+. ++.++.+.. ..+.+.....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G-~---~v~Fi~~e~~~~~l~---a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREG-K---TCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT-C---CEEEECTTSCCCHHH---HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-C---cEEEEEcccccCHHH---HHHcCCCchhceeecCChHHHHHHHHH
Confidence 457999999999999999999988755321 1 56677776 322333 455552211 112334455555
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 038663 250 KRLRERTKKVLIILDDVR 267 (385)
Q Consensus 250 ~~l~~~~kr~LlVlDdv~ 267 (385)
+.++.. +.-+||+|++.
T Consensus 1499 ~lvr~~-~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSG-AVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHT-CCSEEEESCGG
T ss_pred HHHhcC-CCCEEEEcChh
Confidence 555553 77899999984
No 223
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.83 E-value=0.006 Score=53.95 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
....+|+|.|++|+||||+++.+.+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999998754
No 224
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.82 E-value=0.0067 Score=52.02 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
....+|.|.|+.|+||||+++.+...+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998875
No 225
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.81 E-value=0.0065 Score=55.38 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...+++|+|+.|+||||+++.+......
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987653
No 226
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.80 E-value=0.006 Score=51.37 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998753
No 227
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.80 E-value=0.0036 Score=54.59 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=16.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHH-HHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLA-KQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~-~~~ 202 (385)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 228
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.79 E-value=0.0056 Score=51.97 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...|+|.|+.|+||||+++.+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 229
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.78 E-value=0.11 Score=50.56 Aligned_cols=28 Identities=36% Similarity=0.388 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
..++|+|+|.+|+||||++..+...+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4579999999999999999999987654
No 230
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.78 E-value=0.0074 Score=50.20 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...+|.|.|+.|+||||+++.+...+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3468999999999999999999987643
No 231
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.78 E-value=0.0046 Score=53.15 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
..+++|+|+.|+|||||++.+.-.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999876
No 232
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.77 E-value=0.0045 Score=53.88 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.--
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998843
No 233
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.75 E-value=0.0059 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.|.|.|++|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 234
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.74 E-value=0.0076 Score=57.80 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=34.0
Q ss_pred CcchHHHHHHHHHHhcc--------------CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 159 LESSSKALNSIMKLLKD--------------EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
++|.+..++.|...+.. ...+.+.++|++|+||||+|+.+.....
T Consensus 17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56777766666555421 1346799999999999999999998865
No 235
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.74 E-value=0.0064 Score=52.12 Aligned_cols=24 Identities=42% Similarity=0.608 Sum_probs=21.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+|.|.|++|+||+|.|+.+.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 688999999999999999998764
No 236
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=95.73 E-value=0.022 Score=55.66 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=56.3
Q ss_pred HHHHhcc-CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHH----Hhc-----C
Q 038663 169 IMKLLKD-EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAE----LLK-----F 234 (385)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~----~l~-----~ 234 (385)
.++.|.. ....-++|.|..|+|||+|++.+.+... -+ .++++.++ ...+++.++-+ ..+ .
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~--~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~r 290 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQ--VVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMER 290 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CS--EEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGG
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CC--EEEEEEecccHHHHHHHHHHHHHhcccccccccccc
Confidence 4455542 2345789999999999999999877533 34 77778887 44444444322 011 0
Q ss_pred -----ccccccHH------HHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 235 -----KIEEENEL------QRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 235 -----~~~~~~~~------~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
.....+.. ...-.+-+++++.++.+||++|++.
T Consensus 291 tvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~Dslt 334 (588)
T 3mfy_A 291 TVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTS 334 (588)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTT
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchH
Confidence 01111111 1223455666665699999999985
No 237
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.72 E-value=0.0037 Score=51.94 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
++++|+|++|+|||||++.+......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999999988764
No 238
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.71 E-value=0.007 Score=52.89 Aligned_cols=26 Identities=35% Similarity=0.685 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|+|.|++|+||||+++.+.+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988764
No 239
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.71 E-value=0.0077 Score=50.13 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
.+++.|+|+.|+|||||++.+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987653
No 240
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.70 E-value=0.0063 Score=54.31 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.--
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999998853
No 241
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.68 E-value=0.0063 Score=53.39 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999998654
No 242
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=95.68 E-value=0.029 Score=54.36 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=56.6
Q ss_pred HHHHhcc-CCceEEEEEcCCCCchHHH-HHHHHHHhhhh----CCCCCceEEEEEcC----CHHHHHHHHHHHhcC----
Q 038663 169 IMKLLKD-EKVNIIGVQGPGGVGKSTL-MEQLAKQIDTI----APYDKAHVIVAESS----DLRRIQDKIAELLKF---- 234 (385)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtL-a~~v~~~~~~~----~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~---- 234 (385)
.++.+.. ....-++|+|.+|+|||+| +..+.+..... ++-+ ..++++.++ ...++.+.+...-..
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d-~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKK-LYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTC-CEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCC-eEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 3454442 2334679999999999999 55777766521 1111 246677777 444445555432111
Q ss_pred ---ccccccH-H-----HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 235 ---KIEEENE-L-----QRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 235 ---~~~~~~~-~-----~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
.....+. . ...-.+-+++++.++..||++||+..
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 1111111 1 12334567777666999999999853
No 243
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=95.64 E-value=0.043 Score=53.79 Aligned_cols=93 Identities=20% Similarity=0.225 Sum_probs=55.8
Q ss_pred HHHHhcc-CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhc--------Cc----
Q 038663 169 IMKLLKD-EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLK--------FK---- 235 (385)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~--------~~---- 235 (385)
.++.|.. ....-++|.|..|+|||+|+..+.+... -+ .++++.++...+-..++.+.+. ..
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~--v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~r 295 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VD--LVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMER 295 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CS--EEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGG
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CC--EEEEEEecccHHHHHHHHHHHHhhcccccccccccc
Confidence 4555543 2345789999999999999999987643 34 6777777722222223333321 10
Q ss_pred ------cccccHH------HHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 236 ------IEEENEL------QRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 236 ------~~~~~~~------~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
....+.. ...-.+-+++++.++.+||++|++.
T Consensus 296 tvvV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 296 TVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 0111111 1223455677766699999999985
No 244
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.64 E-value=0.0069 Score=53.59 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|+|+|++|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999998765
No 245
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.63 E-value=0.015 Score=53.10 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
....+++|+|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999998654
No 246
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.61 E-value=0.0061 Score=54.75 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
...+++|+|+.|+|||||++.+.-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999874
No 247
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.61 E-value=0.0063 Score=54.30 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.--
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 4569999999999999999998854
No 248
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.60 E-value=0.0075 Score=53.94 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999874
No 249
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.60 E-value=0.0079 Score=50.95 Aligned_cols=27 Identities=41% Similarity=0.548 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
..-.+|+|+|+.|+||||+++.+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999999999998864
No 250
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.59 E-value=0.0072 Score=53.51 Aligned_cols=25 Identities=44% Similarity=0.598 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.--
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999873
No 251
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.58 E-value=0.0068 Score=53.41 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.--
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999999853
No 252
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.58 E-value=0.0093 Score=55.67 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...+++|+|+.|+||||+++.+......
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3579999999999999999999987653
No 253
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.57 E-value=0.013 Score=52.16 Aligned_cols=113 Identities=20% Similarity=0.246 Sum_probs=58.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhc
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRER 255 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 255 (385)
....+++|+|+.|+|||||++.+....... +. +.+.+.... ...+.+.....+....-..+.......+.+.|..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~-G~I~~~g~~-i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~- 97 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KS-YHIITIEDP-IEYVFKHKKSIVNQREVGEDTKSFADALRAALRE- 97 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CC-CEEEEEESS-CCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHH-
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC--CC-CEEEEcCCc-ceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhh-
Confidence 445799999999999999999998765432 11 022222221 0000000000000000000011234566777777
Q ss_pred CCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhh
Q 038663 256 TKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDV 297 (385)
Q Consensus 256 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v 297 (385)
++=+|++|+..+......+.... ..|..|++||...+.
T Consensus 98 -~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 98 -DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp -CCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred -CCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 67788899987544333221111 235568888877654
No 254
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.57 E-value=0.008 Score=55.51 Aligned_cols=25 Identities=32% Similarity=0.528 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+|+|.|++|+||||||..+...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 255
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.56 E-value=0.0064 Score=53.05 Aligned_cols=26 Identities=23% Similarity=0.566 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...+++|+|+.|+|||||++.+.--.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34699999999999999999998654
No 256
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.56 E-value=0.065 Score=52.40 Aligned_cols=50 Identities=22% Similarity=0.167 Sum_probs=37.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAE 230 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~ 230 (385)
..++.|.|++|+|||||+.++......... . .++|++.. +..++...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~--~vl~~s~E~s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMG-K--KVGLAMLEESVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSC-C--CEEEEESSSCHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcC-C--cEEEEeccCCHHHHHHHHHH
Confidence 468899999999999999999987653211 1 57788877 66666665543
No 257
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.55 E-value=0.0063 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||.+.+.--
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999853
No 258
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.55 E-value=0.0057 Score=52.79 Aligned_cols=25 Identities=36% Similarity=0.800 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.--
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999854
No 259
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.55 E-value=0.0087 Score=50.87 Aligned_cols=24 Identities=29% Similarity=0.655 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+|+|.|+.|+||||+++.+...+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988754
No 260
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.54 E-value=0.011 Score=59.44 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=38.0
Q ss_pred CCCCcchHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 156 YVPLESSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 156 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...++|.+..++.+...+..+ ..+.|+|++|+||||||+.+.....
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 345789888888877777655 5889999999999999999998754
No 261
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.54 E-value=0.0064 Score=54.07 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||.+.+.--
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999998753
No 262
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.53 E-value=0.056 Score=46.94 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..++|.|++|+||||+++.+.+.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4679999999999999999998765
No 263
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.53 E-value=0.0074 Score=53.94 Aligned_cols=24 Identities=38% Similarity=0.693 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
...+++|+|+.|+|||||++.+.-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 456999999999999999999984
No 264
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.52 E-value=0.0071 Score=53.74 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.--
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999999853
No 265
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.52 E-value=0.0098 Score=51.88 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...|.|.|++|+||||+++.+.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998865
No 266
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.51 E-value=0.017 Score=55.99 Aligned_cols=28 Identities=36% Similarity=0.523 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...+++|+|++|+|||||++.+...+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 4579999999999999999999987653
No 267
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.50 E-value=0.018 Score=55.02 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=56.5
Q ss_pred HHHHhcc-CCceEEEEEcCCCCchHHHHHHHHHHhhhhC-------CCCCceEEEEEcC----CHHHHHHHHHHH--hcC
Q 038663 169 IMKLLKD-EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIA-------PYDKAHVIVAESS----DLRRIQDKIAEL--LKF 234 (385)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------~F~~~~~~wv~vs----~~~~l~~~i~~~--l~~ 234 (385)
.++.|.. ....-++|.|.+|+|||+|+..+.+...... .-.+..++++.++ ...++...+... +..
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 3454442 2234568999999999999999988765310 1122245566666 444555554332 111
Q ss_pred -----c-cccccH-----HHHHHHHHHHHHh-cCCcEEEEEeCCC
Q 038663 235 -----K-IEEENE-----LQRRATLAKRLRE-RTKKVLIILDDVR 267 (385)
Q Consensus 235 -----~-~~~~~~-----~~~~~~l~~~l~~-~~kr~LlVlDdv~ 267 (385)
. .+.... ....-.+-++++. .++.+||++||+.
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0 111111 1123456678875 3599999999985
No 268
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.48 E-value=0.0069 Score=53.50 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.--
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998754
No 269
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.48 E-value=0.0097 Score=51.21 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 270
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.46 E-value=0.0096 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.|.|.|++|+||||+++.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998763
No 271
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.45 E-value=0.0075 Score=54.09 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.--
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999999853
No 272
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.45 E-value=0.0085 Score=53.36 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.--
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4569999999999999999999753
No 273
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.43 E-value=0.0092 Score=54.71 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
++|.|+|+.|+|||||+..+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 274
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.40 E-value=0.0094 Score=51.18 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.|.|.|++|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 275
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.40 E-value=0.0096 Score=51.31 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..|.|.|++|+||||+++.+.+.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998764
No 276
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.40 E-value=0.008 Score=53.72 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.--
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999998853
No 277
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.39 E-value=0.0093 Score=54.33 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
....+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345799999999999999999998765
No 278
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.38 E-value=0.008 Score=53.17 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.--
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999998754
No 279
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.37 E-value=0.01 Score=54.08 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++|.|+||.|+|||||+..+.+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35899999999999999999997653
No 280
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.35 E-value=0.035 Score=53.59 Aligned_cols=95 Identities=14% Similarity=0.193 Sum_probs=55.3
Q ss_pred HHHHhcc-CCceEEEEEcCCCCchHHHH-HHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------c
Q 038663 169 IMKLLKD-EKVNIIGVQGPGGVGKSTLM-EQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------K 235 (385)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~ 235 (385)
.++.+.. ....-++|+|.+|+|||+|| ..+.+... -+ ..++++.++ ...++.+.+...-.. .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~d-v~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QD-VICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CS-EEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CC-cEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 3455542 23456799999999999995 57776542 12 244667777 444455555432111 1
Q ss_pred cccccH-H-----HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 236 IEEENE-L-----QRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 236 ~~~~~~-~-----~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
....+. . ...-.+-+++++.++..||++||+..
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 111111 1 12234567777666999999999853
No 281
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.35 E-value=0.061 Score=51.97 Aligned_cols=44 Identities=27% Similarity=0.543 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 161 SSSKALNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 161 gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
+....+..+...+..++ +.+.|.|++|+|||+++..+...+...
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 34445566666665543 489999999999999999999887654
No 282
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.34 E-value=0.0077 Score=54.24 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.--
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4468999999999999999999854
No 283
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.34 E-value=0.007 Score=54.83 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+..+|+|.|+.|+||||+++.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999998755
No 284
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.33 E-value=0.0083 Score=53.20 Aligned_cols=26 Identities=42% Similarity=0.573 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...+++|+|+.|+|||||++.+.--.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998653
No 285
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.30 E-value=0.011 Score=53.36 Aligned_cols=24 Identities=29% Similarity=0.637 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
...+|+|.|+.|+||||+++.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 286
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.26 E-value=0.05 Score=52.60 Aligned_cols=95 Identities=14% Similarity=0.205 Sum_probs=54.9
Q ss_pred HHHHhcc-CCceEEEEEcCCCCchHHHH-HHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------c
Q 038663 169 IMKLLKD-EKVNIIGVQGPGGVGKSTLM-EQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------K 235 (385)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~ 235 (385)
.++.+.. ....-++|+|.+|+|||+|| ..+.+... -+ ..++++.++ ...++.+.+...-.. .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~----~d-v~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG----QG-VYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT----TT-EEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc----CC-cEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 3444432 23356799999999999995 57776543 12 135667777 444455555432111 1
Q ss_pred cccccH-H-----HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 038663 236 IEEENE-L-----QRRATLAKRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 236 ~~~~~~-~-----~~~~~l~~~l~~~~kr~LlVlDdv~~ 268 (385)
....+. . ...-.+-+++++.++..||++||+..
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 111111 1 12334567777666999999999853
No 287
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.25 E-value=0.012 Score=53.52 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..++|.|+||.|+|||||+..+.+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 346899999999999999999998753
No 288
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.23 E-value=0.0092 Score=54.95 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.++|.|+||.|+|||||+..+.+.+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998653
No 289
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.20 E-value=0.016 Score=53.12 Aligned_cols=30 Identities=30% Similarity=0.547 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
++.+||+|+|-||+||||.+-.+.-.+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 457899999999999999999988876543
No 290
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.17 E-value=0.015 Score=50.58 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
....|+|.|+.|+||||+++.+.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999998874
No 291
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=95.17 E-value=0.049 Score=52.71 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=49.5
Q ss_pred ceEEEEEcCCCCchHHHH-HHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCc-----------ccccc-----
Q 038663 178 VNIIGVQGPGGVGKSTLM-EQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFK-----------IEEEN----- 240 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~-----------~~~~~----- 240 (385)
..-++|+|.+|+|||+|| ..+.+... . + ..++++.++...+-..++.+.+... ....+
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~--~--d-v~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQG--Q--N-VICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCT--T--T-CEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhc--C--C-cEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 346789999999999995 57776543 1 1 2456777772222233333333210 00110
Q ss_pred -HHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 241 -ELQRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 241 -~~~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
.....-.+-+++++.++..||++||+.
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 122334455666665699999999975
No 292
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.16 E-value=0.011 Score=55.01 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
...+++|+|+.|+|||||.+.+.-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 446899999999999999999985
No 293
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.16 E-value=0.012 Score=49.49 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.-.++|+|++|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998753
No 294
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=95.12 E-value=0.075 Score=51.28 Aligned_cols=94 Identities=19% Similarity=0.265 Sum_probs=54.3
Q ss_pred HHHHhcc-CCceEEEEEcCCCCchHHHH-HHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHHHhcC-------c
Q 038663 169 IMKLLKD-EKVNIIGVQGPGGVGKSTLM-EQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAELLKF-------K 235 (385)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~~l~~-------~ 235 (385)
.++.+.. ....-++|.|.+|+|||+|+ ..+.+... -+ ..++++.++ ...++...+...-.. .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~----~d-v~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~a 226 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRD----SG-IKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVA 226 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTSS----SS-CEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEE
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhcc----CC-ceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEE
Confidence 3444442 23346799999999999996 56666421 11 245677777 444555554433111 1
Q ss_pred cccccH-H-----HHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 236 IEEENE-L-----QRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 236 ~~~~~~-~-----~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
....+. . ...-.+-+++++.++..||++||+.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 227 TASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 111111 1 1233456677666699999999985
No 295
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.12 E-value=0.034 Score=51.83 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=29.0
Q ss_pred HHHHHHHhc--cCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 166 LNSIMKLLK--DEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 166 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+...+. .....+|+|+|.+|+|||||+..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444443 34677999999999999999999987764
No 296
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.11 E-value=0.062 Score=62.33 Aligned_cols=128 Identities=12% Similarity=0.124 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHHHHhcCccc-----cccHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIAELLKFKIE-----EENELQRRATLAK 250 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~l~~ 250 (385)
+-+.++||+|+|||++|+.+..... .+ ....++.+ +...+.+.+...+..... ....
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~---~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~--------- 1332 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY---DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPK--------- 1332 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC---EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEB---------
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC---ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCC---------
Confidence 5778999999999999977765432 23 33445555 444444444433321100 0000
Q ss_pred HHHhcCCcEEEEEeCCCcc--h------------hhhhhcCCCCCCC------CCeEEEEeeCChh------h-hhhcC-
Q 038663 251 RLRERTKKVLIILDDVREK--I------------NLAVSGIPYGEEG------NRCKVIVTSRRLD------V-CSKMS- 302 (385)
Q Consensus 251 ~l~~~~kr~LlVlDdv~~~--~------------~~~~l~~~~~~~~------~gs~iivTtr~~~------v-~~~~~- 302 (385)
..++++++++||+.-. + ++-+.+..+.... .+..+|.++.... + ....+
T Consensus 1333 ---~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRr 1409 (2695)
T 4akg_A 1333 ---SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRH 1409 (2695)
T ss_dssp ---SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTT
T ss_pred ---CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhe
Confidence 0127899999996421 1 1111111111111 1345566664432 1 11223
Q ss_pred CceEEcCCCCHHHHHHHHHHhh
Q 038663 303 DVTVQIEELGEEDRLKLFKQIA 324 (385)
Q Consensus 303 ~~~~~l~~L~~~~~~~lf~~~~ 324 (385)
..++.+...+.++...+|....
T Consensus 1410 f~vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1410 AAILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp EEEEECCCCTTTHHHHHHHHHH
T ss_pred eeEEEeCCCCHHHHHHHHHHHH
Confidence 5788999999999998888765
No 297
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.09 E-value=0.011 Score=52.99 Aligned_cols=23 Identities=48% Similarity=0.566 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999754
No 298
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.07 E-value=0.013 Score=52.99 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.+|.|.|++|+||||+++.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 299
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.07 E-value=0.011 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
..+++|+|+.|+|||||++.+.--
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999854
No 300
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.07 E-value=0.011 Score=56.49 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
....+|.|+|++|+||||+++.+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999998754
No 301
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.06 E-value=0.063 Score=59.57 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCcc------ccccHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKI------EEENELQRRATLA 249 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~------~~~~~~~~~~~l~ 249 (385)
...++.|.|++|+||||||.++........ . .++|++.. ....+. ++.++... ...+..+....+.
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g--~--~VlyiS~Ees~~ql~---A~~lGvd~~~L~i~~~~~leei~~~l~ 803 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--K--TCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPDTGEQALEICD 803 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--C--CEEEECTTSCCCHHH---HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcC--C--CeEEEeccchHHHHH---HHHcCCChhheEEecCCcHHHHHHHHH
Confidence 346999999999999999999998765321 1 56777776 433332 55555321 1223455555555
Q ss_pred HHHHhcCCcEEEEEeCCCc
Q 038663 250 KRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 250 ~~l~~~~kr~LlVlDdv~~ 268 (385)
+.+... +.-+||+|.+..
T Consensus 804 ~lv~~~-~~~lVVIDsLq~ 821 (1706)
T 3cmw_A 804 ALARSG-AVDVIVVDSVAA 821 (1706)
T ss_dssp HHHHHT-CCSEEEESCSTT
T ss_pred HHHHcc-CCCEEEEechhh
Confidence 555443 667999999864
No 302
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.03 E-value=0.078 Score=46.07 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
+.+.|+|+.|+||||+.....-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 5889999999999987665543
No 303
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.02 E-value=0.02 Score=52.53 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS 219 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs 219 (385)
...+++|+|++|+||||++..+........ . .+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g--~--kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELG--Y--KVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTT--C--CEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--C--eEEEEeCC
Confidence 457999999999999999999998776431 1 44555544
No 304
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.02 E-value=0.013 Score=49.43 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
-.++|+|++|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 305
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.01 E-value=0.015 Score=54.70 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||.+.+.--
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcC
Confidence 4468999999999999999999853
No 306
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.00 E-value=0.014 Score=54.38 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||.+.+.--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 4568999999999999999999853
No 307
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.00 E-value=0.031 Score=54.62 Aligned_cols=46 Identities=11% Similarity=-0.033 Sum_probs=34.9
Q ss_pred CcchHHHHHHHHHHh--ccCCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 159 LESSSKALNSIMKLL--KDEKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...|.+-.+.+.+.. ...+..+|.+.|++|+||||+++.+.+.+..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 445555556666655 2345679999999999999999999999874
No 308
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.00 E-value=0.058 Score=48.66 Aligned_cols=40 Identities=33% Similarity=0.243 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS 219 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs 219 (385)
...+++|+|++|+|||||++.+.........- .+.|+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~---~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK---KVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCC---CEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCC---eEEEEeCc
Confidence 34699999999999999999999876543111 34555554
No 309
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.00 E-value=0.015 Score=54.38 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||.+.+.--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4569999999999999999999853
No 310
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.98 E-value=0.013 Score=54.55 Aligned_cols=25 Identities=32% Similarity=0.695 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||.+.+.--
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4469999999999999999999853
No 311
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.98 E-value=0.012 Score=52.78 Aligned_cols=26 Identities=46% Similarity=0.576 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..++.|+|++|+|||||+..+.....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46999999999999999999987654
No 312
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.98 E-value=0.015 Score=54.25 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
...+++|+|+.|+|||||++.+.-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 456999999999999999999984
No 313
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.97 E-value=0.011 Score=54.03 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+..-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 4579999999999999999998753
No 314
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.95 E-value=0.015 Score=48.34 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+.+|+|+.|+|||||+..++--+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4889999999999999999987543
No 315
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.94 E-value=0.014 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.566 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...+++|+|+.|+|||||++.+.--.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45699999999999999999998653
No 316
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.91 E-value=0.016 Score=54.33 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
...+++|+|+.|+|||||.+.+.-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 456999999999999999999984
No 317
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.90 E-value=0.02 Score=49.99 Aligned_cols=27 Identities=37% Similarity=0.574 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|+|.|+.|+||||+++.+...+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999987653
No 318
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.89 E-value=0.017 Score=54.31 Aligned_cols=27 Identities=30% Similarity=0.286 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
....+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455799999999999999999999754
No 319
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.87 E-value=0.013 Score=50.18 Aligned_cols=110 Identities=18% Similarity=0.128 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhc
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIEEENELQRRATLAKRLRER 255 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 255 (385)
...+..++|+.|.||||.+.....+..... .. ++.+... +.+.-...+.+.++........... ..+.+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g-~k---Vli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~-~~~~~~~~~- 100 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAK-QH---AIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSAS-KDIFKHITE- 100 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTT-CC---EEEEECC-----------------CCEEECSSG-GGGGGGCCS-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCC-CE---EEEEEeccCCcchHHHHHhhcCCeeEEeecCCH-HHHHHHHhc-
Confidence 346889999999999999888888775432 33 3333333 3332233455555432221110000 112222222
Q ss_pred CCcEEEEEeCCCcc--hhhhhhcCCCCCCCCCeEEEEeeCChh
Q 038663 256 TKKVLIILDDVREK--INLAVSGIPYGEEGNRCKVIVTSRRLD 296 (385)
Q Consensus 256 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~~ 296 (385)
+-=+|++|++.-. +.++.+ ..+.+ .|..||+|.+..+
T Consensus 101 -~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 101 -EMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp -SCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECSBC
T ss_pred -CCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEecccc
Confidence 2339999998743 333222 22212 2678999998543
No 320
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.83 E-value=0.015 Score=48.46 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~ 200 (385)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 321
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.81 E-value=0.017 Score=47.07 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
..++|+|++|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999753
No 322
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.81 E-value=0.016 Score=54.30 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||.+.+.--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 3468999999999999999999853
No 323
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.81 E-value=0.013 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||.+.+.--
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 4469999999999999999999853
No 324
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.80 E-value=0.021 Score=45.95 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
+.|+|+|.+|+|||||.+.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 325
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.78 E-value=0.027 Score=51.24 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=26.4
Q ss_pred HHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 166 LNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 166 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+++|.+.+.+ .+++|+|++|+|||||.+.+. ...
T Consensus 156 i~~L~~~l~G---~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 156 IDELVDYLEG---FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHHTTT---CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHHhhccC---cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 3455555543 589999999999999999998 543
No 326
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.71 E-value=0.03 Score=55.29 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHHh--ccCCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 160 ESSSKALNSIMKLL--KDEKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 160 ~gr~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
+.+......+.... .-.+..++.|+|+.|+|||||++.+......
T Consensus 349 f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 349 YSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp TSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 33333344444433 1234579999999999999999999998763
No 327
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.69 E-value=0.016 Score=60.90 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLA 199 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~ 199 (385)
...+++|+||.|.||||+.+.+.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999984
No 328
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.69 E-value=0.019 Score=54.11 Aligned_cols=25 Identities=44% Similarity=0.671 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
++|+|.||.|+|||||+..+.....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998754
No 329
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.68 E-value=0.013 Score=50.91 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998775
No 330
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=94.66 E-value=0.038 Score=53.92 Aligned_cols=93 Identities=22% Similarity=0.225 Sum_probs=54.7
Q ss_pred HHHHhcc-CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC----CHHHHHHHHHH----HhcCc----
Q 038663 169 IMKLLKD-EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS----DLRRIQDKIAE----LLKFK---- 235 (385)
Q Consensus 169 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs----~~~~l~~~i~~----~l~~~---- 235 (385)
.++.|.. ....-++|.|..|+|||+|+..+.+... -+ .++++.++ ...+++.++-+ ..+..
T Consensus 211 vID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~----~~--v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~r 284 (578)
T 3gqb_A 211 ILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSN----AD--VVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHR 284 (578)
T ss_dssp HHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSS----CS--EEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGG
T ss_pred hhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccC----CC--EEEEEEecccHHHHHHHHHHHHhhcccccccccccc
Confidence 4455542 2345789999999999999999987643 34 67777777 33333333211 01110
Q ss_pred ------cccccHH------HHHHHHHHHHHhcCCcEEEEEeCCC
Q 038663 236 ------IEEENEL------QRRATLAKRLRERTKKVLIILDDVR 267 (385)
Q Consensus 236 ------~~~~~~~------~~~~~l~~~l~~~~kr~LlVlDdv~ 267 (385)
....+.. ...-.+-+++++.++.+||++|++.
T Consensus 285 tvvv~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 328 (578)
T 3gqb_A 285 TVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTS 328 (578)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCEEEECCSCHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecChH
Confidence 0011111 1123455666665699999999985
No 331
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.60 E-value=0.09 Score=44.36 Aligned_cols=112 Identities=20% Similarity=0.140 Sum_probs=57.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC------CHHHHHHHHHHHhc-------Ccccccc----
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS------DLRRIQDKIAELLK-------FKIEEEN---- 240 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs------~~~~l~~~i~~~l~-------~~~~~~~---- 240 (385)
-..|.|++..|.||||.|--+.-+.-... + .+..+..- ....++..+. +. ..+...+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G-~---rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG-K---NVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT-C---CEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC-C---eEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHH
Confidence 35677777777999999998887754332 3 33333222 2233333330 10 0111111
Q ss_pred ---HHHHHHHHHHHHHhcCCcEEEEEeCCCcc-----hhhhhhcCCCCCCCCCeEEEEeeCChh
Q 038663 241 ---ELQRRATLAKRLRERTKKVLIILDDVREK-----INLAVSGIPYGEEGNRCKVIVTSRRLD 296 (385)
Q Consensus 241 ---~~~~~~~l~~~l~~~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTtr~~~ 296 (385)
.........+.+.+. +-=|||||++-.. ...+++...+........||+|+|...
T Consensus 102 ~~~a~~~l~~a~~~l~~~-~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADP-LLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHHTTCT-TCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHhcC-CCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 111233444555441 3458999998432 112222222222334567999999874
No 332
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.60 E-value=0.012 Score=54.74 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
...+++|+|+.|+|||||.+.+.-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 446999999999999999999984
No 333
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.60 E-value=0.017 Score=48.85 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.+.|.|.|++|+||||||..+.+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998764
No 334
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.59 E-value=0.022 Score=49.83 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...|+|.|+.|+||||+++.+.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998864
No 335
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.59 E-value=0.047 Score=45.45 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998864
No 336
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.54 E-value=0.026 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999986
No 337
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.51 E-value=0.026 Score=53.00 Aligned_cols=109 Identities=21% Similarity=0.274 Sum_probs=58.6
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCcccc----ccHHHHHHHHHHH
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEE----ENELQRRATLAKR 251 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 251 (385)
....+++|+|+.|+|||||++.+........ . +.+.++.-. ....+. ..... ... .+.......+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~--~-g~I~~~e~~-~e~~~~---~~~~~-v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTK--S-YHIITIEDP-IEYVFK---HKKSI-VNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHS--C-CEEEEEESS-CCSCCC---CSSSE-EEEEEBTTTBSCSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCC--C-cEEEEeccc-Hhhhhc---cCceE-EEeeecCCCHHHHHHHHHHH
Confidence 3457899999999999999999988765321 1 023233221 000000 00000 000 0111223456666
Q ss_pred HHhcCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhh
Q 038663 252 LRERTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDV 297 (385)
Q Consensus 252 l~~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v 297 (385)
+.. .+=+|++|++.+.+......... ..|..|+.|+...++
T Consensus 206 L~~--~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 206 LRE--DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp TTS--CCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred hhh--CcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 666 67789999997655443322221 235568888877654
No 338
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.50 E-value=0.019 Score=52.71 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998653
No 339
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.49 E-value=0.022 Score=53.32 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...++|+|+.|+|||||++.+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999999987654
No 340
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.47 E-value=0.023 Score=46.00 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||.+.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999875
No 341
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.47 E-value=0.036 Score=52.85 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=27.1
Q ss_pred HHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 168 SIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 168 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+.+.+ .....+++|+|+.|+|||||++.+.....
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 343443 34567999999999999999999988754
No 342
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.47 E-value=0.021 Score=53.81 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
...+++|+|+.|+|||||.+.+.-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 456999999999999999999984
No 343
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.45 E-value=0.029 Score=49.51 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...++.+.|.+|+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999997765
No 344
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.43 E-value=0.022 Score=45.82 Aligned_cols=22 Identities=50% Similarity=0.670 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.|.++|.+|+|||||++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 345
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.40 E-value=0.026 Score=46.77 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
..|+|+|++|+|||||.+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999863
No 346
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.38 E-value=0.012 Score=58.92 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.+.++|++|+|||+||+.+.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 68999999999999999998764
No 347
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.35 E-value=0.036 Score=50.35 Aligned_cols=34 Identities=29% Similarity=0.555 Sum_probs=26.1
Q ss_pred HHHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 166 LNSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 166 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
++++...+.+ .+++|+|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~g---eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLKG---KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhcC---CeEEEECCCCCcHHHHHHHhcccc
Confidence 3455555543 589999999999999999987543
No 348
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.32 E-value=0.12 Score=58.08 Aligned_cols=84 Identities=21% Similarity=0.240 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCccc------cccHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIE------EENELQRRATLA 249 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~ 249 (385)
...++.|+|++|+||||||.++........ . .++|++.. +...+. ++.++.+.. ..+..++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G--~--~vlyis~E~s~~~~~---a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--K--TCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--C--CEEEECTTSCCCHHH---HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcC--C--eEEEEEcCCCHHHHH---HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 346999999999999999999998765321 2 67788777 333332 455554221 223445555555
Q ss_pred HHHHhcCCcEEEEEeCCCc
Q 038663 250 KRLRERTKKVLIILDDVRE 268 (385)
Q Consensus 250 ~~l~~~~kr~LlVlDdv~~ 268 (385)
..++.. +.-+||+|-+..
T Consensus 455 ~lv~~~-~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSG-AVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHT-CCSEEEESCGGG
T ss_pred HHHHhc-CCcEEEECCHHH
Confidence 555442 567999998753
No 349
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.27 E-value=0.025 Score=46.11 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999998754
No 350
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.25 E-value=0.028 Score=45.28 Aligned_cols=22 Identities=45% Similarity=0.623 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999998864
No 351
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.24 E-value=0.024 Score=54.32 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|+|+|++|+||||++..+.....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998765
No 352
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.24 E-value=0.25 Score=41.67 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=22.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
.|+|=|.-|+||||.++.+++.+...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46788999999999999999998754
No 353
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.22 E-value=0.03 Score=51.77 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
....+++|+|++|+|||||.+.+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4567999999999999999999987654
No 354
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.21 E-value=0.028 Score=45.32 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.-|+|+|.+|+|||||.+.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999865
No 355
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.19 E-value=0.038 Score=45.76 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHH
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.....|+|+|.+|+|||||.+.+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998754
No 356
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.17 E-value=0.029 Score=48.11 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+|.|.|+.|+||||+++.+.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999987653
No 357
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.17 E-value=0.034 Score=47.43 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
....|.|+|++|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998753
No 358
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.16 E-value=0.031 Score=45.07 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~ 201 (385)
|+|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 359
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.16 E-value=0.03 Score=45.44 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
-.|+|+|.+|+|||||.+.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998865
No 360
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.15 E-value=0.032 Score=45.95 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=24.3
Q ss_pred HHHHHhcc-CCceEEEEEcCCCCchHHHHHHHHH
Q 038663 168 SIMKLLKD-EKVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 168 ~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
.+.+.+.. .....|+|+|.+|+|||||...+..
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 33343333 4556789999999999999988763
No 361
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.15 E-value=0.029 Score=45.25 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
-|+|+|.+|+|||||.+.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 362
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.11 E-value=0.06 Score=50.03 Aligned_cols=27 Identities=37% Similarity=0.641 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|+|+|++|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 367999999999999999999987643
No 363
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.11 E-value=0.031 Score=45.28 Aligned_cols=24 Identities=29% Similarity=0.435 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
--|+|+|.+|+|||||.+.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998753
No 364
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.10 E-value=0.03 Score=45.26 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
-|+|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988653
No 365
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.10 E-value=0.03 Score=46.59 Aligned_cols=23 Identities=48% Similarity=0.621 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
-.|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36789999999999999999865
No 366
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.08 E-value=0.047 Score=46.93 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=26.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYD 209 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 209 (385)
...|.|.|+.|+||||+++.+.+.+... .+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~ 36 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIE 36 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCC
Confidence 4689999999999999999999988643 344
No 367
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.08 E-value=0.043 Score=49.84 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=25.5
Q ss_pred cCCceEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 175 DEKVNIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 175 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
....++|+|+|-||+||||++..+...+...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 3467899999999999999999999887643
No 368
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.07 E-value=0.031 Score=45.84 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998864
No 369
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.07 E-value=0.024 Score=53.04 Aligned_cols=26 Identities=42% Similarity=0.627 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+++|+|+.|+|||||++.+.....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45899999999999999999987654
No 370
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.06 E-value=0.032 Score=47.24 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=21.0
Q ss_pred HHHHHhccCCceEEEEEcCCCCchHHHHHHHHHH
Q 038663 168 SIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 168 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.+.+.....+.-.|+|+|.+|+|||||...+...
T Consensus 20 ~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 20 HMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ----------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3333333344457799999999999999988864
No 371
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.06 E-value=0.032 Score=45.67 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||.+.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 372
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.02 E-value=0.039 Score=45.12 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
+...|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998754
No 373
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.02 E-value=0.032 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999887764
No 374
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.01 E-value=0.028 Score=46.26 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 375
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.01 E-value=0.03 Score=45.38 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchHHHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLA 199 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~ 199 (385)
-|+|+|.+|+|||||.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999986
No 376
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.01 E-value=0.43 Score=41.42 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHh
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~~ 202 (385)
+.|+|+.|+|||.++..+....
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7899999999999998887664
No 377
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.00 E-value=0.057 Score=44.78 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=25.4
Q ss_pred HHHHHHhccCCceEEEEEcCCCCchHHHHHHHHHH
Q 038663 167 NSIMKLLKDEKVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 167 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
..+.+ +.......|+|+|.+|+|||||.+.+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34445 33344567899999999999999998853
No 378
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.98 E-value=0.066 Score=53.18 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
....+|.|.|++|+||||+|+.+.+.+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 34578999999999999999999998764
No 379
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.97 E-value=0.027 Score=45.55 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~ 200 (385)
-|+|+|.+|+|||||.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998853
No 380
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.96 E-value=0.032 Score=45.23 Aligned_cols=23 Identities=43% Similarity=0.670 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||.+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998863
No 381
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.96 E-value=0.041 Score=44.33 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
..+.+|+|+.|+||||+...++--+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999987654
No 382
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.93 E-value=0.033 Score=46.36 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
--|+|+|.+|+|||||++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999998777643
No 383
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.92 E-value=0.066 Score=54.15 Aligned_cols=57 Identities=16% Similarity=0.374 Sum_probs=33.6
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCchH-HHHHHHHHHhhhhCCCCCceEEEEEcC---CHHHHHHHHH
Q 038663 165 ALNSIMKLLKDEKVNIIGVQGPGGVGKS-TLMEQLAKQIDTIAPYDKAHVIVAESS---DLRRIQDKIA 229 (385)
Q Consensus 165 ~~~~l~~~L~~~~~~vi~I~G~~GiGKT-tLa~~v~~~~~~~~~F~~~~~~wv~vs---~~~~l~~~i~ 229 (385)
..+.+...|... .+..|+||+|+||| |++..|++-.... ..+.++.. ....++..+.
T Consensus 194 Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~------~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 194 QKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQG------LKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHTT------CCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhCC------CeEEEEcCchHHHHHHHHHHH
Confidence 344555555433 37789999999999 5565565555421 33444444 4555555543
No 384
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.92 E-value=0.031 Score=46.32 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999875
No 385
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.91 E-value=0.037 Score=47.05 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.+|.|.|+.|+||||+++.+.+.+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999875
No 386
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.89 E-value=0.035 Score=44.86 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998864
No 387
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.89 E-value=0.032 Score=45.14 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999998854
No 388
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.87 E-value=0.022 Score=48.36 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHH
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
.....++|+|++|+|||||.+.+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999998764
No 389
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.85 E-value=0.035 Score=51.52 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
....+++|+|+.|+|||||++.+.....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456999999999999999999998865
No 390
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.81 E-value=0.034 Score=45.52 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...|+|+|.+|+|||||.+.+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999875
No 391
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.80 E-value=0.044 Score=53.82 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|.++|++|+||||+++.+.+.+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998765
No 392
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.77 E-value=0.053 Score=46.91 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=25.9
Q ss_pred cCCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 175 DEKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 175 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
......|.|.|+.|+||||+++.+.+.+..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345678999999999999999999998875
No 393
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.77 E-value=0.038 Score=44.82 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999764
No 394
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.77 E-value=0.026 Score=51.37 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=18.6
Q ss_pred EEEEEcCCCCchHHHHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~ 200 (385)
-|+|+|++|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 349999999999999999774
No 395
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.74 E-value=0.034 Score=45.54 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||.+.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999998754
No 396
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.74 E-value=0.038 Score=45.12 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...|+|+|.+|+|||||.+.+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3578999999999999999998653
No 397
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.74 E-value=0.04 Score=47.86 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
...|.|-|+.|+||||+++.+.+.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999988653
No 398
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.74 E-value=0.039 Score=45.60 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHHHHh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
-|+|+|.+|+|||||...+....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998653
No 399
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.70 E-value=0.04 Score=45.90 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.--|+|+|.+|+|||||++.+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346889999999999999988865
No 400
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.69 E-value=0.039 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.--|+|+|.+|+|||||+..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 401
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.69 E-value=0.054 Score=47.33 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS 219 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs 219 (385)
...|.|.|+.|+||||+++.+.+.+... ++. .+....-.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~--~~~~~rep 65 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GID--HITRTREP 65 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCC--CEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCC--eeeeecCC
Confidence 4689999999999999999999988753 344 34444443
No 402
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.68 E-value=0.036 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...|+|+|.+|+|||||.+.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347799999999999999998864
No 403
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.67 E-value=0.019 Score=51.02 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
....|+|.|+.|+||||+++.+.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999987753
No 404
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.66 E-value=0.033 Score=53.03 Aligned_cols=21 Identities=48% Similarity=0.627 Sum_probs=19.5
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~ 201 (385)
++|+|+.|+|||||++.+...
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999854
No 405
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.65 E-value=0.037 Score=45.35 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.--|+|+|.+|+|||||...+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998754
No 406
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.64 E-value=0.041 Score=45.35 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.-.|+|+|.+|+|||||.+.+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346799999999999999999865
No 407
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.62 E-value=0.041 Score=45.88 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.--|+|+|.+|+|||||.+.+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999998874
No 408
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.61 E-value=0.043 Score=45.99 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
--|+|+|.+|+|||||.+.+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999875
No 409
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.60 E-value=0.059 Score=46.59 Aligned_cols=26 Identities=27% Similarity=0.153 Sum_probs=22.2
Q ss_pred EEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
.|.+.|.||+||||+|..+.......
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47889999999999999998887643
No 410
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.59 E-value=0.043 Score=45.73 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998754
No 411
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.57 E-value=0.032 Score=45.77 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||.+.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998864
No 412
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.57 E-value=0.044 Score=44.97 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||.+.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998865
No 413
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.55 E-value=0.043 Score=45.19 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
-|+|+|.+|+|||||.+.+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998764
No 414
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.54 E-value=0.04 Score=45.00 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998854
No 415
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.53 E-value=0.035 Score=53.58 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...+++|+|+.|+|||||++.+..-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45689999999999999999998753
No 416
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.52 E-value=0.04 Score=45.48 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||.+.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 417
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.51 E-value=0.056 Score=45.51 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
....|+|+|.+|+|||||.+.+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 344678999999999999999864
No 418
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.50 E-value=0.027 Score=51.92 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccc--cHHHHHHHHHHHHHhc
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEE--NELQRRATLAKRLRER 255 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~ 255 (385)
..+++|+|+.|+|||||++.+....... . ..+.+.-.+ ++. ........... ........+...|..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~---~--g~i~i~~~~--e~~---~~~~~~~i~~~~ggg~~~r~~la~aL~~- 239 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKE---E--RIISIEDTE--EIV---FKHHKNYTQLFFGGNITSADCLKSCLRM- 239 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTT---S--CEEEEESSC--CCC---CSSCSSEEEEECBTTBCHHHHHHHHTTS-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC---C--cEEEECCee--ccc---cccchhEEEEEeCCChhHHHHHHHHhhh-
Confidence 3589999999999999999998765421 1 222222111 000 00000000000 111233455566666
Q ss_pred CCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCChhh
Q 038663 256 TKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRRLDV 297 (385)
Q Consensus 256 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~~~v 297 (385)
++=+|++|++...+.+..+. .+..+ +.-+|+||+..+.
T Consensus 240 -~p~ilildE~~~~e~~~~l~-~~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 240 -RPDRIILGELRSSEAYDFYN-VLCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp -CCSEEEECCCCSTHHHHHHH-HHHTT--CCCEEEEEECSSH
T ss_pred -CCCEEEEcCCChHHHHHHHH-HHhcC--CCEEEEEEcccHH
Confidence 78889999988755444332 22111 2226666665543
No 419
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.50 E-value=0.032 Score=46.95 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLA 199 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~ 199 (385)
.-.|+|+|.+|+|||||.+.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999984
No 420
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.50 E-value=0.042 Score=51.10 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.+++|+|++|+|||||++.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 589999999999999999988543
No 421
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.50 E-value=0.045 Score=45.09 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
..-|+|+|.+|+|||||.+.+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 346889999999999999999865
No 422
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.47 E-value=0.045 Score=44.92 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999988754
No 423
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.46 E-value=0.046 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||...+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998765
No 424
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.46 E-value=0.11 Score=51.28 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=33.3
Q ss_pred CcchHHHHHHHHHHh--ccCCceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 159 LESSSKALNSIMKLL--KDEKVNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 159 ~~gr~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
.+.|.+-.+.+.+.. ......+|.+.|++|+||||+++.+.+.+..
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 334444555555555 2344578999999999999999999987653
No 425
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.46 E-value=0.042 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.+++|+|+.|+|||||++.+.--.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 799999999999999999998654
No 426
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.43 E-value=0.066 Score=45.99 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDTI 205 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 205 (385)
..|.|-|+.|+||||+++.+.+.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999988754
No 427
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.42 E-value=0.046 Score=45.98 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...|+|+|.+|+|||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998865
No 428
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.41 E-value=0.045 Score=45.61 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
--|+|+|.+|+|||||.+.+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 467899999999999999988753
No 429
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.40 E-value=0.047 Score=45.98 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...|+|+|.+|+|||||.+.+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999998865
No 430
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.39 E-value=0.048 Score=45.68 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
..--|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998875
No 431
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.39 E-value=0.047 Score=45.56 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999999875
No 432
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.37 E-value=0.069 Score=46.26 Aligned_cols=104 Identities=16% Similarity=0.100 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCcccc---ccHHHHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEE---ENELQRRATLAKRLRE 254 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 254 (385)
..+..++|+-|.||||-+-....+.... ... ..++-..-+.+.- ..+.+.++..... ....+ +.+.+ +
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~-g~k--vli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~d----i~~~~-~ 89 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA-QYK--CLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRD----VAQEA-L 89 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT-TCC--EEEEEETTCCCC------------CEEEEESSGGG----GHHHH-T
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC-CCe--EEEEeecCCccch-HHHHhhcCCeeEEEecCCHHH----HHHHh-c
Confidence 4688999999999997776666665432 233 3333322232222 4455555443221 11111 22222 2
Q ss_pred cCCcEEEEEeCCCcchhhhhhcCCCCCCCCCeEEEEeeCC
Q 038663 255 RTKKVLIILDDVREKINLAVSGIPYGEEGNRCKVIVTSRR 294 (385)
Q Consensus 255 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iivTtr~ 294 (385)
+--+|++|++.-.....++...+.+ .|..||+|.+.
T Consensus 90 --~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 90 --GVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp --TCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCS
T ss_pred --cCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEecc
Confidence 3348999998644333333322222 46789999988
No 433
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.36 E-value=0.038 Score=45.73 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998764
No 434
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.36 E-value=0.049 Score=45.21 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...|+|+|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998865
No 435
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.33 E-value=0.045 Score=44.98 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...|+|+|.+|+|||||...+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999854
No 436
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.29 E-value=0.048 Score=49.50 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999864
No 437
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.28 E-value=0.05 Score=45.23 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||.+.+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999864
No 438
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.25 E-value=0.05 Score=52.22 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.....++|+|+.|+|||||++.+.....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3456899999999999999999998764
No 439
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.25 E-value=0.061 Score=49.76 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=24.8
Q ss_pred cCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 175 DEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 175 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
.....+++|+|++|+|||||+..+.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999987654
No 440
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.25 E-value=0.051 Score=53.65 Aligned_cols=24 Identities=46% Similarity=0.727 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
..+++|+|+.|+|||||++.+.-.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999853
No 441
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.23 E-value=0.048 Score=45.51 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.--|+|+|.+|+|||||...+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998653
No 442
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.23 E-value=0.052 Score=45.11 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.--|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999998865
No 443
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.22 E-value=0.052 Score=45.22 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36789999999999999998864
No 444
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.21 E-value=0.052 Score=45.31 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.--|+|+|.+|+|||||.+.+....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999988753
No 445
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.21 E-value=0.046 Score=53.91 Aligned_cols=25 Identities=44% Similarity=0.739 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.-.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4579999999999999999998853
No 446
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.19 E-value=0.053 Score=45.18 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.--|+|+|.+|+|||||.+.+....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998653
No 447
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.19 E-value=0.048 Score=46.16 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.--|+|+|.+|+|||||++.+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999998764
No 448
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.17 E-value=0.052 Score=46.10 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999865
No 449
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.16 E-value=0.062 Score=46.24 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
...|.|-|+.|+||||+++.+.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998763
No 450
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.15 E-value=0.049 Score=46.25 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.--|+|+|.+|+|||||++.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999875
No 451
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.15 E-value=0.069 Score=47.30 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
++|+|.|-||+||||++..+...+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~ 27 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA 27 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH
Confidence 57888999999999999999988764
No 452
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.14 E-value=0.056 Score=44.92 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999998764
No 453
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.13 E-value=0.05 Score=45.80 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...-|+|+|.+|+|||||.+.+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34578999999999999999998753
No 454
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.10 E-value=0.047 Score=45.70 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHH
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
...--|+|+|.+|+|||||...+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445689999999999999998864
No 455
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.09 E-value=0.05 Score=53.71 Aligned_cols=26 Identities=42% Similarity=0.758 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...+++|+|+.|+|||||++.++-..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999754
No 456
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.09 E-value=0.052 Score=45.33 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346899999999999999999864
No 457
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.09 E-value=0.065 Score=51.92 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|.++|++|+||||+++.+.+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346889999999999999999998765
No 458
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.07 E-value=0.27 Score=54.59 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhhhhCCCCCceEEEEEcC-CHHHHHHHHHHHhcCcccc------ccHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQIDTIAPYDKAHVIVAESS-DLRRIQDKIAELLKFKIEE------ENELQRRATLA 249 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~~wv~vs-~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~ 249 (385)
..++|-|+||.|+||||||.++........ . ..+|+... .+.... ++.++...+. ...+..+..+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g--~--~~~~i~~e~~~~~~~---~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--K--TCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--C--CEEEECTTSCCCHHH---HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcC--C--eEEEEecCCCCCHHH---HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 457999999999999999999987654332 2 66777776 333332 6676654321 12344555666
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 038663 250 KRLRERTKKVLIILDDVR 267 (385)
Q Consensus 250 ~~l~~~~kr~LlVlDdv~ 267 (385)
..++.. ..-+||+|-|-
T Consensus 1503 ~~~~s~-~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1503 ALARSG-AVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHT-CCSEEEESCST
T ss_pred HHHHcC-CCCEEEEccHH
Confidence 666663 66789999874
No 459
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.06 E-value=0.056 Score=54.09 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||.+.+.-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4569999999999999999998853
No 460
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.05 E-value=0.057 Score=45.36 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...-|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999998754
No 461
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.05 E-value=0.057 Score=44.86 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
-.|+|+|.+|+|||||...+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 462
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.01 E-value=0.044 Score=54.03 Aligned_cols=25 Identities=44% Similarity=0.804 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
..+++|+|+.|+|||||++.++--.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998653
No 463
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.99 E-value=0.065 Score=44.28 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 176 EKVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 176 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.....|+|+|.+|+|||||.+.+....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678999999999999999988643
No 464
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.98 E-value=0.081 Score=47.52 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQIDT 204 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 204 (385)
.++|+|.|-||+||||++..+...+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~ 28 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE 28 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH
Confidence 468888999999999999999988764
No 465
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.98 E-value=0.055 Score=45.48 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 466
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.96 E-value=0.034 Score=47.63 Aligned_cols=85 Identities=20% Similarity=0.093 Sum_probs=40.7
Q ss_pred CceEEEEEcCCCCchHH-HHHHHHHHhhhhCCCCCceEEEEEcCCHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhc
Q 038663 177 KVNIIGVQGPGGVGKST-LMEQLAKQIDTIAPYDKAHVIVAESSDLRRIQDKIAELLKFKIEEENELQRRATLAKRLRER 255 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~F~~~~~~wv~vs~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 255 (385)
...+..|+|+-|+|||| |.+.+++ .... ... ..++-..-+.+.-...|.+.++...+....... ..+.+.+.+
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r-~~~~-g~k--vli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~-~di~~~i~~- 100 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRR-GIYA-KQK--VVVFKPAIDDRYHKEKVVSHNGNAIEAINISKA-SEIMTHDLT- 100 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHH-HHHT-TCC--EEEEEEC-----------CBTTBCCEEEEESSG-GGGGGSCCT-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH-HHHc-CCc--eEEEEeccCCcchhhhHHHhcCCceeeEEeCCH-HHHHHHHhc-
Confidence 45788999999999999 5555544 4332 233 433333335444445566666653332211100 112222234
Q ss_pred CCcEEEEEeCCCc
Q 038663 256 TKKVLIILDDVRE 268 (385)
Q Consensus 256 ~kr~LlVlDdv~~ 268 (385)
+...|++|+++-
T Consensus 101 -~~dvV~IDEaQF 112 (219)
T 3e2i_A 101 -NVDVIGIDEVQF 112 (219)
T ss_dssp -TCSEEEECCGGG
T ss_pred -CCCEEEEechhc
Confidence 667899999864
No 467
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.95 E-value=0.057 Score=46.26 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAK 200 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~ 200 (385)
.--|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999998863
No 468
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.93 E-value=0.055 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998864
No 469
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.91 E-value=0.066 Score=44.70 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
....|+|+|.+|+|||||...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999998754
No 470
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.88 E-value=0.057 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999854
No 471
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.88 E-value=0.063 Score=47.83 Aligned_cols=24 Identities=25% Similarity=0.482 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...|+|+|.+|+|||||.+.+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998754
No 472
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.85 E-value=0.056 Score=54.10 Aligned_cols=26 Identities=42% Similarity=0.758 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
...+++|+|+.|+|||||++.+.-..
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999653
No 473
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.85 E-value=0.091 Score=44.55 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|+|+|++|+||+|+|..+.+...
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g 36 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLG 36 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcC
Confidence 457999999999999999999977553
No 474
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.80 E-value=0.073 Score=53.22 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
...+|.|.|++|+||||+|+.+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999874
No 475
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.78 E-value=0.056 Score=45.30 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.--|+|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999977653
No 476
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.76 E-value=0.065 Score=45.32 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999998864
No 477
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.06 Score=53.87 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHHh
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQI 202 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~~ 202 (385)
.+++|+|+.|+|||||++.+.--.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 579999999999999999998653
No 478
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.74 E-value=0.073 Score=46.29 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999998864
No 479
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.73 E-value=0.076 Score=45.76 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
....|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999998764
No 480
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.72 E-value=0.059 Score=53.77 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4568999999999999999999854
No 481
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.71 E-value=0.063 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.--|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999998754
No 482
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.69 E-value=0.063 Score=45.42 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998864
No 483
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.65 E-value=0.066 Score=44.63 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||.+.+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 484
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.63 E-value=0.051 Score=51.73 Aligned_cols=21 Identities=43% Similarity=0.600 Sum_probs=19.1
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 038663 181 IGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 181 i~I~G~~GiGKTtLa~~v~~~ 201 (385)
|+|+|++|+|||||++.+...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999999864
No 485
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.61 E-value=0.063 Score=44.82 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||.+.+...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998754
No 486
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.60 E-value=0.062 Score=45.25 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.--|+|+|.+|+|||||.+.+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999998743
No 487
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.59 E-value=0.04 Score=45.44 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=9.8
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999988754
No 488
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.56 E-value=0.062 Score=44.77 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
++.|+|.+|+||||+|.++...
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999998854
No 489
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.53 E-value=0.069 Score=45.02 Aligned_cols=24 Identities=17% Similarity=0.345 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.--|+|+|.+|+|||||+..+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 456899999999999999998754
No 490
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.52 E-value=0.073 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHH
Q 038663 180 IIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 180 vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
-|.|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999998753
No 491
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.52 E-value=0.088 Score=45.54 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+|.|.|+.|+||||+++.+.+.+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46999999999999999999998765
No 492
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.49 E-value=0.074 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||...+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46789999999999999998865
No 493
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.49 E-value=0.089 Score=44.72 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
..+.+|+|+.|+||||+...++--+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46889999999999999999876554
No 494
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.46 E-value=0.072 Score=48.52 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
....|+|+|.+|+|||||...+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578999999999999999998864
No 495
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.45 E-value=0.059 Score=53.91 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+..-
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999854
No 496
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.44 E-value=0.067 Score=45.61 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCchHHHHHHHHHH
Q 038663 178 VNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 178 ~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.--|+|+|.+|+|||||...+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998753
No 497
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.42 E-value=0.071 Score=45.18 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
--|+|+|.+|+|||||+..+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998864
No 498
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.40 E-value=0.072 Score=44.82 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHHHHH
Q 038663 179 NIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 179 ~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998864
No 499
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.38 E-value=0.074 Score=53.23 Aligned_cols=25 Identities=40% Similarity=0.695 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCchHHHHHHHHHH
Q 038663 177 KVNIIGVQGPGGVGKSTLMEQLAKQ 201 (385)
Q Consensus 177 ~~~vi~I~G~~GiGKTtLa~~v~~~ 201 (385)
...+++|+|+.|+|||||++.+.-.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3469999999999999999998753
No 500
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.38 E-value=0.1 Score=48.43 Aligned_cols=31 Identities=35% Similarity=0.542 Sum_probs=25.7
Q ss_pred hccCCceEEEEEcCCCCchHHHHHHHHHHhh
Q 038663 173 LKDEKVNIIGVQGPGGVGKSTLMEQLAKQID 203 (385)
Q Consensus 173 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 203 (385)
+.....+++.+.|.||+||||+|..+.....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3355678999999999999999999887655
Done!