BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038664
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 143/301 (47%), Gaps = 21/301 (6%)
Query: 39 DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNG 98
+T LH+AAR GH V +L+ + V+ + +TP+H AAR G+ + K+ + + N
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 106
Query: 99 NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAID 158
N T G+TPLH A R+ + ++ K+ C + K G +PL +A
Sbjct: 107 NLATT----------AGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFTPLHVAAK 155
Query: 159 AGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDR 218
G +A ++ E+ + + G N LT LH+A+ +N ++ K+L + +
Sbjct: 156 YGKVRVAELLL-ERDAHPNAAGKNGLTPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGY 213
Query: 219 NPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSI 278
PLH AA E+A L + A G +PLHLA++ G ++ LL +
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG- 271
Query: 279 EFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVL 338
+K LHL AQ GH V + K M++++ G TPLH+A+ ++ NI L
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKH---GVMVDATTRMGYTPLHVAS--HYGNIKL 326
Query: 339 I 339
+
Sbjct: 327 V 327
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 149/322 (46%), Gaps = 45/322 (13%)
Query: 35 SQNRDTALHIAARFGHKNVVMEILE--LRPDLVSVENHKSETPMHVAARAGNFGVAKIFM 92
+++ T LH AAR GH N+V +LE P+L + H TP+H+AAR G+ +
Sbjct: 77 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH---TPLHIAAREGHVETVLALL 133
Query: 93 RPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQ-- 150
+ + K+ G TPLH A + ++A ++ +D + N AG+
Sbjct: 134 EKEAS-------QACMTKK---GFTPLHVAAKYGKVRVAELLLERD----AHPNAAGKNG 179
Query: 151 -SPLSLAIDAGLTHIACCIIKEKLSVLDHRG-------PNDLTLLHIAIIKSNFVVMAKI 202
+PL +A+ H I+K +L RG N T LHIA K N V +A+
Sbjct: 180 LTPLHVAVH----HNNLDIVK----LLLPRGGSPHSPAWNGYTPLHIA-AKQNQVEVARS 230
Query: 203 LEAKRDLINVLDKRDRNPLHYAAALGHFE-IACRLSDEDDTLAYERDCNGQSPLHLASEN 261
L N + PLH AA GH E +A LS + + + +G +PLHL ++
Sbjct: 231 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN--GNLGNKSGLTPLHLVAQE 288
Query: 262 GKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEG 321
G + + L+ + ++ + LH+A+ G+ +V F L + + +N+ G
Sbjct: 289 GHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGNIKLVKF---LLQHQADVNAKTKLG 344
Query: 322 NTPLHLAAINNHFNIVLILARN 343
+PLH AA H +IV +L +N
Sbjct: 345 YSPLHQAAQQGHTDIVTLLLKN 366
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 111/256 (43%), Gaps = 28/256 (10%)
Query: 34 MSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFM- 92
M++ T LH+AA++G K V E+L R + TP+HVA N + K+ +
Sbjct: 142 MTKKGFTPLHVAAKYG-KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200
Query: 93 ---RPHGNGNNTGTFDDILRKQDE-------------------EGNTPLHNAVRKCDGKM 130
PH N T I KQ++ +G TPLH A ++ +M
Sbjct: 201 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM 260
Query: 131 AFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIA 190
++ K NK+G +PL L G +A +IK + V D T LH+A
Sbjct: 261 VALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVA 318
Query: 191 IIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN 250
N ++ +L+ + D +N K +PLH AA GH +I L ++ E +
Sbjct: 319 SHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLL-KNGASPNEVSSD 376
Query: 251 GQSPLHLASENGKLSL 266
G +PL +A G +S+
Sbjct: 377 GTTPLAIAKRLGYISV 392
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 253 SPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIED 312
+PLH+AS G L ++K LL S + K LH+AA+ GH V + L + +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKY---LLQNKA 71
Query: 313 MINSSDLEGNTPLHLAAINNHFNIV-LILARNMRVNIRAT 351
+N+ + TPLH AA H N+V L+L N N+ T
Sbjct: 72 KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT 111
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 218 RNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDS 277
R PLH AA GH E+ +L E +D NG++PLHLA+ NG L ++K LL + D
Sbjct: 3 RTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 278 IEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIV 337
+ DK R LHLAA+NGH VV L E +N+ D G TPLHLAA N H +V
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKL---LLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 338 LIL 340
+L
Sbjct: 118 KLL 120
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPE 309
NG++PLHLA+ NG L ++K LL + D + DK R LHLAA+NGH VV L E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKL---LLE 56
Query: 310 IEDMINSSDLEGNTPLHLAAINNHFNIV-LILARNMRVNIRATNEKKQTALA 360
+N+ D G TPLHLAA N H +V L+L VN + N + LA
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 149 GQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRD 208
G++PL LA G + +++ V + + N T LH+A + V+ +LEA D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 209 LINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK 268
+N DK R PLH AA GH E+ +L E +D NG++PLHLA+ NG L ++K
Sbjct: 61 -VNAKDKNGRTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 269 RLLHS 273
LL +
Sbjct: 119 LLLEA 123
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
N T LH+AAR GH VV +LE D V+ ++ TP+H+AAR G+ V K+ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 97 NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLA 156
+ N +D+ G TPLH A R ++ ++ + + +K G++PL LA
Sbjct: 60 DVN----------AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLA 108
Query: 157 IDAGLTHIACCIIK 170
G + +++
Sbjct: 109 ARNGHLEVVKLLLE 122
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 36 QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPH 95
+N T LH+AAR GH VV +LE D V+ ++ TP+H+AAR G+ V K+ +
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 96 GNGNNTGTFDDILRKQDEEGNTPLHNAVR 124
+ N +D+ G TPLH A R
Sbjct: 92 ADVN----------AKDKNGRTPLHLAAR 110
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 36 QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFM 92
+N T LH+AAR GH VV +LE D V+ ++ TP+H+AAR G+ V K+ +
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL 121
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 9/135 (6%)
Query: 210 INVLDKRDRNPLHYAAALGHFEIACRL-SDEDDTLAYERDCNGQSPLHLASENGKLSLLK 268
+N D R PLH+AA GH E+ L S D A +D +G++PLH A+ENG ++K
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA--KDSDGRTPLHHAAENGHKEVVK 87
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHL 327
L+ D + D R LH AA+NGH VV + ISK + +N+SD +G TPL L
Sbjct: 88 LLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD----VNTSDSDGRTPLDL 142
Query: 328 AAINNHFNIVLILAR 342
A + + +V +L +
Sbjct: 143 AREHGNEEVVKLLEK 157
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 7/115 (6%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISK 306
D +G++PLH A+ENG ++K L+ D + D R LH AA+NGH VV + ISK
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIV-LILARNMRVNIRATNEKKQTALA 360
++ N+ D +G TPLH AA N H +V L++++ VN ++ + LA
Sbjct: 93 GADV----NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLA 143
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL-SDEDDTL 243
T LH A + V+ K+L +K +N D R PLH+AA GH E+ L S D
Sbjct: 39 TPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 97
Query: 244 AYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVF 303
A +D +G++PLH A+ENG ++K L+ D + D R L LA ++G+ VV
Sbjct: 98 A--KDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 304 ISK 306
+ K
Sbjct: 155 LEK 157
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINS 316
A+ENG +K L+ + D + D R LH AA+NGH VV + ISK ++ N+
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV----NA 65
Query: 317 SDLEGNTPLHLAAINNHFNIV-LILARNMRVNIRATN 352
D +G TPLH AA N H +V L++++ VN + ++
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 102
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 13/170 (7%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A G+ V++ NG + + T LH AA GHK VV ++
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D V+ ++ TP+H AA G+ V K+ + + N +D +G TPLH+
Sbjct: 61 AD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN----------AKDSDGRTPLHH 109
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKE 171
A ++ +I K + + + G++PL LA + G + + K+
Sbjct: 110 AAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 112 DEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKE 171
D +G TPLH+A ++ +I K + + + G++PL A + G + +I +
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 172 KLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFE 231
V + + + T LH A + V+ K+L +K +N D R PL A G+ E
Sbjct: 93 GADV-NAKDSDGRTPLHHAAENGHKEVV-KLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 232 I 232
+
Sbjct: 151 V 151
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
Query: 210 INVLDKRDRNPLHYAAALGHFEIACRL-SDEDDTLAYERDCNGQSPLHLASENGKLSLLK 268
+N D R PLHYAA GH EI L S D A +D +G++PLH A++ G ++K
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA--KDSDGRTPLHYAAKEGHKEIVK 87
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHL 327
L+ D + D R LH AA+ GH +V + ISK + +N+SD +G TPL L
Sbjct: 88 LLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD----VNTSDSDGRTPLDL 142
Query: 328 AAINNHFNIVLILAR 342
A + + IV +L +
Sbjct: 143 AREHGNEEIVKLLEK 157
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISK 306
D +G++PLH A++ G ++K L+ D + D R LH AA+ GH +V + ISK
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIV-LILARNMRVN 347
++ N+ D +G TPLH AA H IV L++++ VN
Sbjct: 93 GADV----NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL-SDEDDTL 243
T LH A K + K+L +K +N D R PLHYAA GH EI L S D
Sbjct: 39 TPLHYAA-KEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 97
Query: 244 AYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVF 303
A +D +G++PLH A++ G ++K L+ D + D R L LA ++G+ +V
Sbjct: 98 A--KDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEIVKL 154
Query: 304 ISK 306
+ K
Sbjct: 155 LEK 157
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A G+ V++ NG + + T LH AA+ GHK +V ++
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D V+ ++ TP+H AA+ G+ + K+ + + N +D +G TPLH
Sbjct: 61 AD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN----------AKDSDGRTPLHY 109
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKE 171
A ++ ++ +I K + + + G++PL LA + G I + K+
Sbjct: 110 AAKEGHKEIVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINS 316
A+ENG +K L+ + D + D R LH AA+ GH +V + ISK ++ N+
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV----NA 65
Query: 317 SDLEGNTPLHLAAINNHFNIV-LILARNMRVNIRATN 352
D +G TPLH AA H IV L++++ VN + ++
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 102
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 112 DEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKE 171
D +G TPLH A ++ ++ +I K + + + G++PL A G I +I +
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 172 KLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFE 231
V + + + T LH A K + K+L +K +N D R PL A G+ E
Sbjct: 93 GADV-NAKDSDGRTPLHYAA-KEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 232 I 232
I
Sbjct: 151 I 151
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 72/134 (53%), Gaps = 9/134 (6%)
Query: 211 NVLDKRDRNPLHYAAALGHFEI-ACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKR 269
N D R PLHYAA GH EI LS D A +D +G++PLH A+ENG ++K
Sbjct: 31 NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA--KDSDGRTPLHYAAENGHKEIVKL 88
Query: 270 LLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINSSDLEGNTPLHLA 328
LL D D R LH AA+NGH +V + +SK + N+SD +G TPL LA
Sbjct: 89 LLSKGADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD----PNTSDSDGRTPLDLA 143
Query: 329 AINNHFNIVLILAR 342
+ + IV +L +
Sbjct: 144 REHGNEEIVKLLEK 157
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEI-ACRLSDEDDTL 243
T LH A ++ + K+L +K N D R PLHYAA GH EI LS D
Sbjct: 39 TPLHYAA-ENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 244 AYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVF 303
A +D +G++PLH A+ENG ++K LL D D R L LA ++G+ +V
Sbjct: 98 A--KDSDGRTPLHYAAENGHKEIVKLLLSKGADP-NTSDSDGRTPLDLAREHGNEEIVKL 154
Query: 304 ISK 306
+ K
Sbjct: 155 LEK 157
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIEDMINS 316
A+ENG +K LL + D D R LH AA+NGH +V + +SK + N+
Sbjct: 11 AAENGNKDRVKDLLENGADP-NASDSDGRTPLHYAAENGHKEIVKLLLSKGADP----NA 65
Query: 317 SDLEGNTPLHLAAINNHFNIV-LILARNMRVNIRATN 352
D +G TPLH AA N H IV L+L++ N + ++
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD 102
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 21/174 (12%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRD--TALHIAARFGHKNVVMEILE 59
S + + L A G+ V++ L NG + + D T LH AA GHK +V +L
Sbjct: 2 SELGKRLIEAAENGNKDRVKD---LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLS 58
Query: 60 LRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPL 119
D + ++ TP+H AA G+ + K+ + + N +D +G TPL
Sbjct: 59 KGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN----------AKDSDGRTPL 107
Query: 120 HNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPLSLAIDAGLTHIACCIIKE 171
H A ++ ++ K DP + G++PL LA + G I + K+
Sbjct: 108 HYAAENGHKEIVKLLLSKGADPNT---SDSDGRTPLDLAREHGNEEIVKLLEKQ 158
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPE 309
NG++PLHLA+ NG L ++K LL + D + DK R LHLAA+NGH VV L E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKL---LLE 56
Query: 310 IEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
+N+ D G TPLHLAA N H +V +L
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 218 RNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDS 277
R PLH AA GH E+ +L E +D NG++PLHLA+ NG L ++K LL + D
Sbjct: 3 RTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 278 IEFLDKKNRNILHLAAQNGHANVVVFI 304
+ DK R LHLAA+NGH VV +
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDD 241
N T LH+A + V+ +LEA D +N DK R PLH AA GH E+ +L E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEV-VKLLLEAG 58
Query: 242 TLAYERDCNGQSPLHLASENGKLSLLKRLLHS 273
+D NG++PLHLA+ NG L ++K LL +
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
N T LH+AAR GH VV +LE D V+ ++ TP+H+AAR G+ V K+ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 97 NGNNTGTFDDILRKQDEEGNTPLHNAVR 124
+ N +D+ G TPLH A R
Sbjct: 60 DVN----------AKDKNGRTPLHLAAR 77
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 286 RNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIV-LILARNM 344
R LHLAA+NGH VV L E +N+ D G TPLHLAA N H +V L+L
Sbjct: 3 RTPLHLAARNGHLEVVKL---LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 345 RVNIRATNEKKQTALA 360
VN + N + LA
Sbjct: 60 DVNAKDKNGRTPLHLA 75
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 36 QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFM 92
+N T LH+AAR GH VV +LE D V+ ++ TP+H+AAR G+ V K+ +
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 7/134 (5%)
Query: 210 INVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK 268
+N D + PLH AA GH E+ LS D A +D +G++PLHLA+ENG ++K
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA--KDSDGKTPLHLAAENGHKEVVK 87
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
LL D D + LHLAA+NGH VV + L + D N+SD +G TPL LA
Sbjct: 88 LLLSQGADP-NAKDSDGKTPLHLAAENGHKEVVKLL--LSQGAD-PNTSDSDGRTPLDLA 143
Query: 329 AINNHFNIVLILAR 342
+ + +V +L +
Sbjct: 144 REHGNEEVVKLLEK 157
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSS 317
A+ENG +K LL + D + D + LHLAA+NGH VV + L + D N+
Sbjct: 11 AAENGNKDRVKDLLENGAD-VNASDSDGKTPLHLAAENGHKEVVKLL--LSQGAD-PNAK 66
Query: 318 DLEGNTPLHLAAINNHFNIV-LILARNMRVNIRATNEKKQTALA 360
D +G TPLHLAA N H +V L+L++ N + ++ K LA
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLA 110
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A G+ V++ NG + + T LH+AA GHK VV +L
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLE-NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D + ++ +TP+H+AA G+ V K+ + + N +D +G TPLH
Sbjct: 61 AD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN----------AKDSDGKTPLHL 109
Query: 122 AVRKCDGKMAFTMIRK--DPELICYINKAGQSPLSLAIDAGLTHIACCIIKE 171
A ++ ++ + DP + G++PL LA + G + + K+
Sbjct: 110 AAENGHKEVVKLLLSQGADP---NTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
D G +PLHLA++ G L +++ LL Y + D LHLAA NGH +V + K
Sbjct: 44 DWLGHTPLHLAAKTGHLEIVEVLL-KYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+N+ D EG TPLHLAA + H IV +L + ++ A ++ +TA I
Sbjct: 103 GA---DVNAKDYEGFTPLHLAAYDGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 15/147 (10%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-----GQSPL 255
+IL A +N D PLH AA GH EI L L Y D N G +PL
Sbjct: 31 RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVL------LKYGADVNAWDNYGATPL 84
Query: 256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMIN 315
HLA++NG L +++ LL D + D + LHLAA +GH +V + K +N
Sbjct: 85 HLAADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA---DVN 140
Query: 316 SSDLEGNTPLHLAAINNHFNIVLILAR 342
+ D G T ++ N + ++ IL +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + T LH+AA+ GH +V +L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D+ + +N+ + TP+H+AA G+ + ++ ++ HG N +D EG TPLH
Sbjct: 71 ADVNAWDNYGA-TPLHLAADNGHLEIVEVLLK-HGADVNA---------KDYEGFTPLHL 119
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
A ++ +++ ++ +K G++ ++ID G +A + K
Sbjct: 120 AAYDGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 70/143 (48%), Gaps = 7/143 (4%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N DK PLH AA GH EI L D A +D +G +PLHLA+
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA--KDKDGYTPLHLAA 76
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
G L +++ LL + D + DK LHLAA+ GH +V + K +N+ D
Sbjct: 77 REGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---DVNAQDK 132
Query: 320 EGNTPLHLAAINNHFNIVLILAR 342
G TP LA H +I +L +
Sbjct: 133 FGKTPFDLAIREGHEDIAEVLQK 155
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 17/169 (10%)
Query: 4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRD--TALHIAARFGHKNVVMEILELR 61
+ + L A R G VR L NG ++++D T LH+AAR GH +V +L+
Sbjct: 2 LGKKLLEAARAGQDDEVR---ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D V+ ++ TP+H+AAR G+ + ++ ++ + N +D++G TPLH
Sbjct: 59 AD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN----------AKDKDGYTPLHL 107
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
A R+ ++ +++ ++ +K G++P LAI G IA + K
Sbjct: 108 AAREGHLEIVEVLLKAGADVNAQ-DKFGKTPFDLAIREGHEDIAEVLQK 155
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N DK PLH AA GH EI L D A +D +G +PLHLA+
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA--KDKDGYTPLHLAA 76
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
G L +++ LL + D + DK LHLAA+ GH +V + K +N+ D
Sbjct: 77 REGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---DVNAQDK 132
Query: 320 EGNTPLHLAAINNHFNIVLILAR 342
G TP LA N + +I +L +
Sbjct: 133 FGKTPFDLAIDNGNEDIAEVLQK 155
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRD--TALHIAARFGHKNVVMEILELR 61
+ + L A R G VR L NG ++++D T LH+AAR GH +V +L+
Sbjct: 2 LGKKLLEAARAGQDDEVR---ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D V+ ++ TP+H+AAR G+ + ++ ++ + N +D++G TPLH
Sbjct: 59 AD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN----------AKDKDGYTPLHL 107
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
A R+ ++ +++ ++ +K G++P LAID G IA + K
Sbjct: 108 AAREGHLEIVEVLLKAGADVNAQ-DKFGKTPFDLAIDNGNEDIAEVLQK 155
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
+D +G +PLHLA+ G L +++ LL + D + DK LHLAA+ GH +V + K
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+N+ D +G TPLHLAA H IV +L + ++ A ++ +TA I
Sbjct: 102 AGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDI 152
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N DK PLH AA GH EI L D A +D +G +PLHLA+
Sbjct: 31 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA--KDKDGYTPLHLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
G L +++ LL + D + DK LHLAA+ GH +V + K +N+ D
Sbjct: 89 REGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---DVNAQDK 144
Query: 320 EGNTPLHLAAINNHFNIVLIL 340
G T ++ N + ++ IL
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 17/161 (10%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRD--TALHIAARFGHKNVVMEILE 59
S + + L A R G VR L NG ++++D T LH+AAR GH +V +L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR---ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 68
Query: 60 LRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPL 119
D V+ ++ TP+H+AAR G+ + ++ ++ + N +D++G TPL
Sbjct: 69 AGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN----------AKDKDGYTPL 117
Query: 120 HNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG 160
H A R+ ++ +++ ++ +K G++ ++ID G
Sbjct: 118 HLAAREGHLEIVEVLLKAGADVNAQ-DKFGKTAFDISIDNG 157
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + DK LHLAA+ GH +V + K +N+ D +G TPLHLA
Sbjct: 31 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLA 87
Query: 329 AINNHFNIVLILAR 342
A H IV +L +
Sbjct: 88 AREGHLEIVEVLLK 101
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 5/115 (4%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
D +G +PLHLA+ NG L +++ LL + D + +D L LAA GH +V + K
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+N++D+EG+TPLHLAA+ H IV +L +N ++ A ++ +TA I
Sbjct: 102 NGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDI 152
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N D PLH AA GH EI L + D A D G +PL LA+
Sbjct: 31 RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV--DHAGMTPLRLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
G L +++ LL + D + D + LHLAA GH +V + K +N+ D
Sbjct: 89 LFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDK 144
Query: 320 EGNTPLHLAAINNHFNIVLILAR 342
G T ++ N + ++ IL +
Sbjct: 145 FGKTAFDISIDNGNEDLAEILQK 167
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + + T LH+AA GH +V +L+
Sbjct: 12 SDLGKKLLEAARAGRDDEVR-ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D+ +V+ H TP+ +AA G+ + ++ ++ NG + + D EG+TPLH
Sbjct: 71 ADVNAVD-HAGMTPLRLAALFGHLEIVEVLLK---NGAD-------VNANDMEGHTPLHL 119
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
A ++ +++ ++ +K G++ ++ID G +A + K
Sbjct: 120 AAMFGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQK 167
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 314 INSSDLEGNTPLHLAAINNHFNIVLILARN 343
+N+ D G TPLHLAA N H IV +L +N
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 146 NKAGQSPLSLAIDAGLTHIACCIIKEKLSV--LDHRGPNDLTLLHIAIIKSNFVVMAKIL 203
+ +G +PL LA G I ++K V +DH G +T L +A + + ++ +L
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG---MTPLRLAALFGHLEIVEVLL 100
Query: 204 EAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLASENG 262
+ D +N D PLH AA GH EI L + D A +D G++ ++ +NG
Sbjct: 101 KNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA--QDKFGKTAFDISIDNG 157
Query: 263 KLSLLKRL 270
L + L
Sbjct: 158 NEDLAEIL 165
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPE 309
+G +PLH A++NG +K+LL D + K LHLAA+NGHA +V + L +
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLL--LAK 64
Query: 310 IEDMINSSDLEGNTPLHLAAINNHFNIVLIL-ARNMRVNIRA 350
D +N+ +GNTP HLA N H IV +L A+ VN R+
Sbjct: 65 GAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 289 LHLAAQNGHAN-VVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIV-LILARNMRV 346
LH AA+NGHA V +SK ++ N+ +GNTPLHLAA N H IV L+LA+ V
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADV----NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 347 NIRATN 352
N R+ +
Sbjct: 69 NARSKD 74
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 220 PLHYAAALGHFE-IACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSI 278
PLH AA GH E + LS D A +D G +PLHLA++NG ++K LL D +
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVKLLLAKGAD-V 68
Query: 279 EFLDKKNRNILHLAAQNGHANVVVFI 304
K HLA +NGH +V +
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEI-ACRLSDEDDTL 243
T LH A + + K+L D +N K PLH AA GH EI L+ D
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 244 AYERDCNGQSPLHLASENGKLSLLKRL 270
A +D G +P HLA +NG ++K L
Sbjct: 70 ARSKD--GNTPEHLAKKNGHHEIVKLL 94
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 30 GILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAK 89
G + S++ +T LH AA+ GH V ++L D V+ + TP+H+AA+ G+ + K
Sbjct: 1 GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 90 IFMRPHGNGNNTGTFDDILRKQDEEGNTPLH 120
+ + D R +D GNTP H
Sbjct: 60 LLLAK--------GADVNARSKD--GNTPEH 80
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 113 EEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEK 172
++GNTPLHNA + + ++ K + + +K G +PL LA G I ++ +
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 173 LSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINV 212
V + R + T H+A K+ + K+L+AK +N
Sbjct: 66 ADV-NARSKDGNTPEHLA-KKNGHHEIVKLLDAKGADVNA 103
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 35 SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIF 91
S++ +T LH+AA+ GH +V +L D V+ + TP H+A + G+ + K+
Sbjct: 39 SKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLL 94
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
D G +PLHL NG L +++ LL Y + DK LHLAA GH +V + K
Sbjct: 44 DWFGITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+N+ D +G TPLHLAA + H IV +L + ++ A ++ +TA I
Sbjct: 103 GA---DVNAMDYQGYTPLHLAAEDGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL 243
+T LH+ + + ++ +L+ D +N DK PLH AA GH EI L L
Sbjct: 48 ITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVL------L 100
Query: 244 AYERDCN-----GQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHA 298
Y D N G +PLHLA+E+G L +++ LL Y + DK + ++ NG+
Sbjct: 101 KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 299 NVVVFISKL 307
++ + KL
Sbjct: 160 DLAEILQKL 168
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-----GQSPL 255
+IL A +N D PLH GH EI L L Y D N G +PL
Sbjct: 31 RILMANGADVNANDWFGITPLHLVVNNGHLEIIEVL------LKYAADVNASDKSGWTPL 84
Query: 256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMIN 315
HLA+ G L +++ LL Y + +D + LHLAA++GH +V + K +N
Sbjct: 85 HLAAYRGHLEIVEVLL-KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA---DVN 140
Query: 316 SSDLEGNTPLHLAAINNHFNIVLILAR 342
+ D G T ++ N + ++ IL +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 21/173 (12%)
Query: 2 STVARVLFRALRRGDAATVR----ESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEI 57
S + + L A R G VR A +N N + T LH+ GH ++ +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGI-----TPLHLVVNNGHLEIIEVL 66
Query: 58 LELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNT 117
L+ D V+ + TP+H+AA G+ + ++ ++ + N D +G T
Sbjct: 67 LKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN----------AMDYQGYT 115
Query: 118 PLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
PLH A ++ +++ ++ +K G++ ++ID G +A + K
Sbjct: 116 PLHLAAEDGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
D G +PLHLA+ G L +++ LL + D + LD LHLAA+ GH +V + K
Sbjct: 43 EDTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+N+ D G+TPLHLAA H IV +L + ++ A ++ +TA I
Sbjct: 102 YGA---DVNADDTIGSTPLHLAADTGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N D PLH AA +GH EI L + D A D +G +PLHLA+
Sbjct: 31 RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL--DFSGSTPLHLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
+ G L +++ LL Y + D LHLAA GH +V + K +N+ D
Sbjct: 89 KRGHLEIVEVLL-KYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA---DVNAQDK 144
Query: 320 EGNTPLHLAAINNHFNIVLIL 340
G T ++ N + ++ IL
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 13/159 (8%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + DT LH+AAR GH +V +L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D V+ + TP+H+AA+ G+ + ++ ++ + N T G+TPLH
Sbjct: 71 AD-VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI----------GSTPLHL 119
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG 160
A ++ +++ ++ +K G++ ++ID G
Sbjct: 120 AADTGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNG 157
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 45 AARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTF 104
AAR G + V ++ D V+ E+ +TP+H+AAR G+ + ++ ++ NG +
Sbjct: 21 AARAGQDDEVRILMANGAD-VNAEDTYGDTPLHLAARVGHLEIVEVLLK---NGADVNAL 76
Query: 105 DDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI 164
D G+TPLH A ++ ++ +++ + + + G +PL LA D G I
Sbjct: 77 -------DFSGSTPLHLAAKRGHLEIVEVLLKYGAD-VNADDTIGSTPLHLAADTGHLEI 128
Query: 165 ACCIIK 170
++K
Sbjct: 129 VEVLLK 134
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 314 INSSDLEGNTPLHLAAINNHFNIVLILARN 343
+N+ D G+TPLHLAA H IV +L +N
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
RD G +PLHLA+ G L +++ LL + D + D LHLAA+ GH +V +
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIVEVL-- 99
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
L D +N+SD G TPLHLAA H IV +L +N ++ A ++ +TA I
Sbjct: 100 LKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKN-GADVNAQDKFGKTAFDI 152
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 7/143 (4%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N D PLH AA GH EI L + D A +D G +PLHLA+
Sbjct: 31 RILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA--KDSLGVTPLHLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
G L +++ LL + D + D LHLAA+ GH +V + L D +N+ D
Sbjct: 89 RRGHLEIVEVLLKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVL--LKNGAD-VNAQDK 144
Query: 320 EGNTPLHLAAINNHFNIVLILAR 342
G T ++ N + ++ IL +
Sbjct: 145 FGKTAFDISIDNGNEDLAEILQK 167
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 12/131 (9%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
T LH+AA FGH +V +L+ D V+ ++ TP+H+AAR G+ + ++ ++ NG
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIVEVLLK---NGA 104
Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA 159
+ + D G TPLH A ++ ++ +++ ++ +K G++ ++ID
Sbjct: 105 D-------VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISIDN 156
Query: 160 GLTHIACCIIK 170
G +A + K
Sbjct: 157 GNEDLAEILQK 167
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 7/143 (4%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N D + PLH AA +GH EI L D A RD +G +PLHLA+
Sbjct: 31 RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNA--RDTDGWTPLHLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
+NG L +++ LL Y + D LHLAA GH +V + K +N+ D
Sbjct: 89 DNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA---DVNAQDK 144
Query: 320 EGNTPLHLAAINNHFNIVLILAR 342
G T ++ N + ++ IL +
Sbjct: 145 FGKTAFDISIDNGNEDLAEILQK 167
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
D G +PLHLA+ G +++ LL D + D LHLAA NGH +V + K
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+N+ D G TPLHLAA H IV +L ++ ++ A ++ +TA I
Sbjct: 103 GA---DVNAQDAYGLTPLHLAADRGHLEIVEVLLKH-GADVNAQDKFGKTAFDI 152
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 13/169 (7%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + T LH+AA GH +V +L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D V+ + TP+H+AA G+ + ++ ++ + + QD G TPLH
Sbjct: 71 AD-VNARDTDGWTPLHLAADNGHLEIVEVLLK----------YGADVNAQDAYGLTPLHL 119
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
A + ++ +++ ++ +K G++ ++ID G +A + K
Sbjct: 120 AADRGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
D NG +PLHLA+ NG+L +++ LL + D + D LHLAA +GH +V + K
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILAR 342
+N+ D G TPLHLAA++ IV +L +
Sbjct: 95 GA---DVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N D PLH AAA G EI L + D A D G +PLHLA+
Sbjct: 23 RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA--SDSAGITPLHLAA 80
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
+G L +++ LL D + D+ LHLAA +G +V + K
Sbjct: 81 YDGHLEIVEVLLKHGAD-VNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
T LH+AA GH +V +L+ D V+ + TP+H+AA +G + ++ ++ HG
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGAD-VNAYDRAGWTPLHLAALSGQLEIVEVLLK-HG 128
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 8 LFRALRRGDAATVRESARL---NGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDL 64
L + L AA + R+ NG + N T LH+AA G +V +L+ D
Sbjct: 6 LGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD- 64
Query: 65 VSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLH 120
V+ + TP+H+AA G+ + ++ ++ HG N D G TPLH
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLK-HGADVNA---------YDRAGWTPLH 110
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
D +G +PLHLA+ G L +++ LL D + +D LHLAA GH +V + K
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+N+ D G+TPLHLAAI H IV +L ++ ++ A ++ +TA I
Sbjct: 103 GA---DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH-GADVNAQDKFGKTAFDI 152
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 15/147 (10%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-----GQSPL 255
+IL A +N D PLH AA GH EI L L + D N G +PL
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVEVL------LKHGADVNAIDIXGSTPL 84
Query: 256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMIN 315
HLA+ G L +++ LL D + +D LHLAA GH +V + K +N
Sbjct: 85 HLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA---DVN 140
Query: 316 SSDLEGNTPLHLAAINNHFNIVLILAR 342
+ D G T ++ N + ++ IL +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + + T LH+AA +GH +V +L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D+ +++ S TP+H+AA G+ + ++ ++ + N T+ G+TPLH
Sbjct: 71 ADVNAIDIXGS-TPLHLAALIGHLEIVEVLLKHGADVNAVDTW----------GDTPLHL 119
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG 160
A ++ +++ ++ +K G++ ++ID G
Sbjct: 120 AAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNG 157
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + D LHLAA GH +V + K +N+ D+ G+TPLHLA
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA---DVNAIDIXGSTPLHLA 87
Query: 329 AINNHFNIVLILARN 343
A+ H IV +L ++
Sbjct: 88 ALIGHLEIVEVLLKH 102
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
D G +PLHLA+ +G L +++ LL D ++ D LHLAA GH +V + K
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+N+ D+ G+TPLHLAA H IV +L + ++ A ++ +TA I
Sbjct: 103 GA---DVNAFDMTGSTPLHLAADEGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL----SDEDDTLAYERDCNGQSPLH 256
+IL A +N +D PLH AA GH EI L +D D D G +PLH
Sbjct: 31 RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-----AADVYGFTPLH 85
Query: 257 LASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINS 316
LA+ G L +++ LL Y + D LHLAA GH +V + K +N+
Sbjct: 86 LAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA---DVNA 141
Query: 317 SDLEGNTPLHLAAINN 332
D G T ++ N
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + + T LH+AA GH +V +L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D V + TP+H+AA G+ + ++ ++ G + F D G+TPLH
Sbjct: 71 AD-VDAADVYGFTPLHLAAMTGHLEIVEVLLK---YGADVNAF-------DMTGSTPLHL 119
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG 160
A + ++ +++ ++ +K G++ ++ID G
Sbjct: 120 AADEGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNG 157
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
D +G +PLHLA+ G L +++ LL D + +D LHLAA GH +V + K
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+N+ D G+TPLHLAAI H IV +L ++ ++ A ++ +TA I
Sbjct: 103 GA---DVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH-GADVNAQDKFGKTAFDI 152
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 15/147 (10%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-----GQSPL 255
+IL A +N D PLH AA GH EI L L + D N G +PL
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVEVL------LKHGADVNAIDIMGSTPL 84
Query: 256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMIN 315
HLA+ G L +++ LL D + +D LHLAA GH +V + K +N
Sbjct: 85 HLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA---DVN 140
Query: 316 SSDLEGNTPLHLAAINNHFNIVLILAR 342
+ D G T ++ N + ++ IL +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + + T LH+AA +GH +V +L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D+ +++ S TP+H+AA G+ + ++ ++ + N T+ G+TPLH
Sbjct: 71 ADVNAIDIMGS-TPLHLAALIGHLEIVEVLLKHGADVNAVDTW----------GDTPLHL 119
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG 160
A ++ +++ ++ +K G++ ++ID G
Sbjct: 120 AAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNG 157
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + D LHLAA GH +V + K +N+ D+ G+TPLHLA
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA---DVNAIDIMGSTPLHLA 87
Query: 329 AINNHFNIVLILARN 343
A+ H IV +L ++
Sbjct: 88 ALIGHLEIVEVLLKH 102
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
D +G +PLHLA+ NG L +++ LL + D + D LHLAA GH +V + K
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+N+ D +G+TPLHLAA H IV +L ++ ++ A ++ +TA I
Sbjct: 103 GA---DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH-GADVNAQDKFGKTAFDI 152
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N D PLH AA+ GH EI L + D A D G +PLHLA+
Sbjct: 31 RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA--SDLTGITPLHLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
G L +++ LL D + D LHLAA+ GH +V + K +N+ D
Sbjct: 89 ATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA---DVNAQDK 144
Query: 320 EGNTPLHLAAINNHFNIVLIL 340
G T ++ N + ++ IL
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + D LHLAA NGH +V + K +N+SDL G TPLHLA
Sbjct: 31 RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA---DVNASDLTGITPLHLA 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLH 367
A H IV +L ++ ++ A + T L + H
Sbjct: 88 AATGHLEIVEVLLKH-GADVNAYDNDGHTPLHLAAKYGH 125
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + + T LH+AA GH +V +L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D V+ + TP+H+AA G+ + ++ ++ HG N D +G+TPLH
Sbjct: 71 AD-VNASDLTGITPLHLAAATGHLEIVEVLLK-HGADVNA---------YDNDGHTPLHL 119
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG 160
A + ++ +++ ++ +K G++ ++ID G
Sbjct: 120 AAKYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNG 157
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
D +G++PLHLA+ G L +++ LL D + DK LHLAA GH +V + K
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+N++D G TPLHLAA H IV +L + ++ A ++ +TA I
Sbjct: 102 NGAD---VNATDTYGFTPLHLAADAGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTL 243
T LH+A IK + ++ +L+ D +N DK PLH AA GH EI L + D
Sbjct: 49 TPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVN 107
Query: 244 AYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVF 303
A D G +PLHLA++ G L +++ LL Y + DK + ++ NG+ ++
Sbjct: 108 A--TDTYGFTPLHLAADAGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 304 ISKL 307
+ KL
Sbjct: 165 LQKL 168
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-----GQSPL 255
+IL A +N D + PLH AA GH EI L L + D N G +PL
Sbjct: 31 RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVL------LKHGADVNAADKMGDTPL 84
Query: 256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMIN 315
HLA+ G L +++ LL + D + D LHLAA GH +V + K +N
Sbjct: 85 HLAALYGHLEIVEVLLKNGAD-VNATDTYGFTPLHLAADAGHLEIVEVLLKYGA---DVN 140
Query: 316 SSDLEGNTPLHLAAINNHFNIVLILAR 342
+ D G T ++ N + ++ IL +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + D + LHLAA GH +V + K +N++D G+TPLHLA
Sbjct: 31 RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD---VNAADKMGDTPLHLA 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLH 367
A+ H IV +L +N ++ AT+ T L + + H
Sbjct: 88 ALYGHLEIVEVLLKN-GADVNATDTYGFTPLHLAADAGH 125
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + + T LH+AA GH +V +L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D V+ + +TP+H+AA G+ + ++ ++ + N T T+ G TPLH
Sbjct: 71 AD-VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTY----------GFTPLHL 119
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
A ++ +++ ++ +K G++ ++ID G +A + K
Sbjct: 120 AADAGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 231 EIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILH 290
E+ +++ D AY D G++PLH+A+ G L +++ LL + D + +D LH
Sbjct: 17 EVRILMANGADANAY--DHYGRTPLHMAAAVGHLEIVEVLLRNGAD-VNAVDTNGTTPLH 73
Query: 291 LAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRA 350
LAA GH +V + K +N+ D G TPL+LAA H IV +L ++ ++ A
Sbjct: 74 LAASLGHLEIVEVLLKYGA---DVNAKDATGITPLYLAAYWGHLEIVEVLLKH-GADVNA 129
Query: 351 TNEKKQTALAI 361
++ +TA I
Sbjct: 130 QDKFGKTAFDI 140
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A N D R PLH AAA+GH EI L + D A D NG +PLHLA+
Sbjct: 19 RILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV--DTNGTTPLHLAA 76
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
G L +++ LL Y + D L+LAA GH +V + K
Sbjct: 77 SLGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
T LH+AA GH +V +L D+ +V+ + + TP+H+AA G+ + ++ ++ + N
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT-TPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA 159
+D G TPL+ A ++ +++ ++ +K G++ ++ID
Sbjct: 96 ----------AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDI 144
Query: 160 G 160
G
Sbjct: 145 G 145
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 27 NGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFG 86
NG + + N T LH+AA GH +V +L+ D V+ ++ TP+++AA G+
Sbjct: 57 NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD-VNAKDATGITPLYLAAYWGHLE 115
Query: 87 VAKIFMRPHG 96
+ ++ ++ HG
Sbjct: 116 IVEVLLK-HG 124
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Query: 45 AARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTF 104
AAR G + V ++ D + +H TP+H+AA G+ + ++ +R NG +
Sbjct: 9 AARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLR---NGADVNAV 64
Query: 105 DDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI 164
D G TPLH A ++ +++ + + + G +PL LA G I
Sbjct: 65 -------DTNGTTPLHLAASLGHLEIVEVLLKYGAD-VNAKDATGITPLYLAAYWGHLEI 116
Query: 165 ACCIIKEKLSV 175
++K V
Sbjct: 117 VEVLLKHGADV 127
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 104/213 (48%), Gaps = 13/213 (6%)
Query: 150 QSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDL 209
+SPL A +AG I C ++ + + +D + T L + ++N + K L L
Sbjct: 12 RSPLHAAAEAGHVDI-CHMLVQAGANIDTCSEDQRTPL-MEAAENNHLEAVKYLIKAGAL 69
Query: 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKR 269
++ D LH AA GH+E+ L +D G +P+ A+E + L+K
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 270 LLHSYPDSIEFLDKKNRNILHLAAQNGHANV--VVFISKLPEIEDMINSSDLEGNTPLHL 327
LL D I D + LH AA +G ++ ++ +K +++ ++ G++PLH+
Sbjct: 130 LLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCD-----LHAVNIHGDSPLHI 183
Query: 328 AAINNHFN-IVLILARNMRVNIRATNEKKQTAL 359
AA N ++ +VL L+R+ V ++ N++ +T L
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLK--NKEGETPL 214
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPE 309
N +SPLH A+E G + + L+ + + I+ + R L AA+N H V ++ K
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 310 IEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
+++ D EG+T LHLAA H+ +V L N ++++ ++ T +
Sbjct: 69 ---LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 116/280 (41%), Gaps = 52/280 (18%)
Query: 67 VENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKC 126
+E+ +P+H AA AG+ + + ++ G N T E+ TPL A
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDICHMLVQA---GANIDTC-------SEDQRTPLMEAAE-- 53
Query: 127 DGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTL 186
E + Y+ KAG +++D + T
Sbjct: 54 ---------NNHLEAVKYLIKAG------------------------ALVDPKDAEGSTC 80
Query: 187 LHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYE 246
LH+A K ++ V+ +L + +N D P+ +A H ++ L + +
Sbjct: 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI- 139
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAA-QNGHANVVVFIS 305
RD LH A+ +G + + + LL + D + ++ + LH+AA +N + VV+F+S
Sbjct: 140 RDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLS 198
Query: 306 KLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMR 345
+ + + + EG TPL A++N+ L +++ ++
Sbjct: 199 R----DSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 24/140 (17%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
T LH+AA+ GH VV +L V+ ++ TPM A + + K+ + + N
Sbjct: 79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN 138
Query: 100 NTGTFDDI-----------------------LRKQDEEGNTPLHNAVRKCDGKMAFTMIR 136
++I L + G++PLH A R+ +
Sbjct: 139 IRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS 198
Query: 137 KDPELICYINKAGQSPLSLA 156
+D + + NK G++PL A
Sbjct: 199 RDSD-VTLKNKEGETPLQCA 217
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 254 PLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDM 313
PLH A++ G LS L+ L + + LDK L+ A GH ++V + P IE
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE-- 132
Query: 314 INSSDLEGNTPLHLAAINNHFNIV-LILARNMRVNIRATNEK 354
+N + G+T LH AA + +IV L+LA+ R ++R +K
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK 174
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 8 LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDL-VS 66
L A +RG+ + +RE N G+ + + TAL+ A GHK++V E L +P++ ++
Sbjct: 77 LHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIV-EXLFTQPNIELN 134
Query: 67 VENHKSETPMHVAARAGNFGVAKIFM 92
+N +T +H AA G + ++ +
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 187 LHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYE 246
LH A + N + + L+ R +N LDK L++A GH +I L + + +
Sbjct: 77 LHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 247 RDCNGQSPLHLASENGKLSLLKRLL 271
++ G + LH A+ G +++ LL
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLL 160
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N D PLH AA GH EI L + D AY D G +PLHLA+
Sbjct: 31 RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY--DTLGSTPLHLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
G L +++ LL + D + D LHLAA GH +V + K +N+ D
Sbjct: 89 HFGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA---DVNAQDK 144
Query: 320 EGNTPLHLAAINNHFNIVLILAR 342
G T ++ N + ++ IL +
Sbjct: 145 FGKTAFDISINNGNEDLAEILQK 167
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
D G +PLHLA+ G L +++ LL + D + D LHLAA GH +V + L
Sbjct: 44 DVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVL--L 100
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
D +N+ D G TPLHLAA H IV +L + ++ A ++ +TA I
Sbjct: 101 KNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLK-YGADVNAQDKFGKTAFDI 152
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDT 242
T LH+A + ++ +L+ D +N D PLH AA GH EI L + D
Sbjct: 48 WTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV 106
Query: 243 LAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVV 302
A +D NG +PLHLA+ G L +++ LL Y + DK + ++ NG+ ++
Sbjct: 107 NA--KDDNGITPLHLAANRGHLEIVEVLL-KYGADVNAQDKFGKTAFDISINNGNEDLAE 163
Query: 303 FISKL 307
+ KL
Sbjct: 164 ILQKL 168
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 21/173 (12%)
Query: 2 STVARVLFRALRRGDAATVR----ESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEI 57
S + + L A R G VR A +N ++ T LH+AA +GH +V +
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGW-----TPLHLAAYWGHLEIVEVL 66
Query: 58 LELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNT 117
L+ D V+ + TP+H+AA G+ + ++ ++ NG + + +D+ G T
Sbjct: 67 LKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLK---NGAD-------VNAKDDNGIT 115
Query: 118 PLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
PLH A + ++ +++ ++ +K G++ ++I+ G +A + K
Sbjct: 116 PLHLAANRGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISINNGNEDLAEILQK 167
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 314 INSSDLEGNTPLHLAAINNHFNIVLILARN 343
+N++D+ G TPLHLAA H IV +L +N
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKN 69
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
D G +PLHLA+ +G L +++ LL D ++ D LHLAA GH +V + L
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVL--L 100
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
D +N+ D +G TPLHLAA + IV +L ++ ++ A ++ +TA I
Sbjct: 101 KNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKH-GADVNAQDKFGKTAFDI 152
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL----SDEDDTLAYERDCNGQSPLH 256
+IL A +N D PLH AA GH EI L +D D + D G +PLH
Sbjct: 31 RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS-----DVFGYTPLH 85
Query: 257 LASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINS 316
LA+ G L +++ LL + D + +D LHLAA+ G+ +V + K +N+
Sbjct: 86 LAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD---VNA 141
Query: 317 SDLEGNTPLHLAAINNHFNIVLILAR 342
D G T ++ N + ++ IL +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 13/169 (7%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + R L A R G VR NG + T LH+AA GH +V +L+
Sbjct: 12 SDLGRKLLEAARAGQDDEVR-ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D V + TP+H+AA G+ + ++ ++ NG + + D +G TPLH
Sbjct: 71 AD-VDASDVFGYTPLHLAAYWGHLEIVEVLLK---NGAD-------VNAMDSDGMTPLHL 119
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
A + ++ +++ ++ +K G++ ++ID G +A + K
Sbjct: 120 AAKWGYLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQK 167
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + D LHLAA +GH +V + K +++SD+ G TPLHLA
Sbjct: 31 RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD---VDASDVFGYTPLHLA 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTAL 359
A H IV +L +N ++ A + T L
Sbjct: 88 AYWGHLEIVEVLLKN-GADVNAMDSDGMTPL 117
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 45 AARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTF 104
AAR G + V ++ D+ + +N TP+H+AA +G+ + ++ ++ + + + F
Sbjct: 21 AARAGQDDEVRILMANGADVNAADN-TGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF 79
Query: 105 DDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI 164
G TPLH A ++ +++ + + ++ G +PL LA G I
Sbjct: 80 ----------GYTPLHLAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAKWGYLEI 128
Query: 165 ACCIIKEKLSV 175
++K V
Sbjct: 129 VEVLLKHGADV 139
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 245 YERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI 304
+ D G SPLHLA++ G S + LL + S + K +R LH+AA GHAN+V +
Sbjct: 28 FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 305 SKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILAR 342
L D +N+ D+ T LH A +NH +V +L +
Sbjct: 87 --LKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK 121
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 289 LHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNI 348
LHLAAQ GH + + + D D TPLH+AA H NIV +L ++ ++
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVD---RTPLHMAASEGHANIVEVLLKH-GADV 93
Query: 349 RATNEKKQTALAIVQPSLHQ 368
A + K TAL HQ
Sbjct: 94 NAKDMLKMTALHWATEHNHQ 113
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 21/122 (17%)
Query: 201 KILEAKR----DLINVL---------DKRDRNPLHYAAALGHF---EIACRLSDEDDTLA 244
K+LEA R D + +L D +PLH AA GHF E+ R D
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-- 62
Query: 245 YERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI 304
R ++PLH+A+ G ++++ LL D + D LH A ++ H VV +
Sbjct: 63 --RTKVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 305 SK 306
K
Sbjct: 120 IK 121
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 42 LHIAARFGHKNVVMEILELRPDLVSVENHKSE-TPMHVAARAGNFGVAKIFMRPHG 96
LH+AA++GH + E+L LR + K + TP+H+AA G+ + ++ ++ HG
Sbjct: 38 LHLAAQYGHFSTT-EVL-LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK-HG 90
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 187 LHIAIIKSNFVVMAKILEA--KRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA 244
LH+A +F +L A RD K DR PLH AA+ GH I L L
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRD---ARTKVDRTPLHMAASEGHANIVEVL------LK 88
Query: 245 YERDCNGQ-----SPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHAN 299
+ D N + + LH A+E+ +++ LL Y + K + ++ NG+ +
Sbjct: 89 HGADVNAKDMLKMTALHWATEHNHQEVVE-LLIKYGADVHTQSKFCKTAFDISIDNGNED 147
Query: 300 V 300
+
Sbjct: 148 L 148
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 253 SPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIED 312
+PLH A+ G LS++ +L+ Y +D + + +HLAAQ GH ++V ++ + D
Sbjct: 78 TPLHWATRQGHLSMVVQLM-KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 313 MINSSDLEGNTPLHLAAINNHF--NIVLILARNMRVNIRATNEKKQTAL 359
M+ D G TPL AA H L+L N+ VN+ K TAL
Sbjct: 137 MM---DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL-GDKYHKNTAL 181
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 251 GQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEI 310
G +PLHLA+ G L +++ LL + D + D LHLAA GH VV + K
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGAD-VNADDSLGVTPLHLAADRGHLEVVEVLLKNGA- 104
Query: 311 EDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+N++D G TPLHLAA H IV +L ++ ++ A ++ +TA I
Sbjct: 105 --DVNANDHNGFTPLHLAANIGHLEIVEVLLKH-GADVNAQDKFGKTAFDI 152
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N D PLH AA GH EI L + D A D G +PLHLA+
Sbjct: 31 RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA--DDSLGVTPLHLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
+ G L +++ LL + D + D LHLAA GH +V + K +N+ D
Sbjct: 89 DRGHLEVVEVLLKNGAD-VNANDHNGFTPLHLAANIGHLEIVEVLLKHGA---DVNAQDK 144
Query: 320 EGNTPLHLAAINNHFNIVLILAR 342
G T ++ N + ++ IL +
Sbjct: 145 FGKTAFDISIDNGNEDLAEILQK 167
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + T LH+AA FGH +V +L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D V+ ++ TP+H+AA G+ V ++ ++ NG + + D G TPLH
Sbjct: 71 AD-VNADDSLGVTPLHLAADRGHLEVVEVLLK---NGAD-------VNANDHNGFTPLHL 119
Query: 122 AVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
A ++ +++ ++ +K G++ ++ID G +A + K
Sbjct: 120 AANIGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQK 167
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 314 INSSDLEGNTPLHLAAINNHFNIVLILARN 343
+N+SD G TPLHLAA H IV +L +N
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKN 69
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-----GQSPL 255
+IL A +N LD+ PLH AA LGH EI L L Y D N G +PL
Sbjct: 31 RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVL------LKYGADVNAEDNFGITPL 84
Query: 256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
HLA+ G L +++ LL D + DK + ++ NG+ ++ + KL
Sbjct: 85 HLAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + LD+ LHLAAQ GH +V + K +N+ D G TPLHLA
Sbjct: 31 RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA---DVNAEDNFGITPLHLA 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
AI H IV +L ++ ++ A ++ +TA I
Sbjct: 88 AIRGHLEIVEVLLKH-GADVNAQDKFGKTAFDI 119
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + + ++ T LH+AA+ GH +V +L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
D V+ E++ TP+H+AA G+ + ++ ++ HG
Sbjct: 71 AD-VNAEDNFGITPLHLAAIRGHLEIVEVLLK-HG 103
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 45 AARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTF 104
AAR G + V ++ D V+ + TP+H+AA+ G+ + ++ ++ + N F
Sbjct: 21 AARAGQDDEVRILMANGAD-VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF 79
Query: 105 DDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI 164
G TPLH A + ++ +++ ++ +K G++ ++ID G +
Sbjct: 80 ----------GITPLHLAAIRGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Query: 165 ACCIIK 170
A + K
Sbjct: 129 AEILQK 134
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 185 TLLHIAII-KSNFVVMAKILEAKRDL--INVLDKRDRNPLHYAAALGHFEIACRL--SDE 239
+ LH+AII + + M I + K DL +N + + PLH A EIA L +
Sbjct: 7 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 66
Query: 240 DDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSY--PDSIEFLDKKNRN---ILHLAAQ 294
D L RD G +PLHLA E G L+ + L S P L N N LHLA+
Sbjct: 67 DPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 123
Query: 295 NGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
+G+ +V + L D+ G T LHLA
Sbjct: 124 HGYLGIVELLVSLG--ADVNAQEPCNGRTALHLA 155
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 19/195 (9%)
Query: 34 MSQNRDTALHIAARFGHKNVVMEIL-ELRPDL--VSVENHKSETPMHVAARAGNFGVAKI 90
++++ D+ LH+A K + ME++ +++ DL ++ +N+ +TP+H+A +A+
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 91 FMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRK-CDGKMA-FTMIRKDPEL---ICYI 145
+ G G D LR D GNTPLH A + C + T P L +
Sbjct: 61 LL---GAG-----CDPELR--DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT 110
Query: 146 NKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEA 205
N G + L LA G I ++ V N T LH+A+ N +++ +L+
Sbjct: 111 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 170
Query: 206 KRDLINVLDKRDRNP 220
D +N + + +P
Sbjct: 171 GAD-VNRVTYQGYSP 184
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 78/174 (44%), Gaps = 16/174 (9%)
Query: 185 TLLHIAII-KSNFVVMAKILEAKRDL--INVLDKRDRNPLHYAAALGHFEIACRL--SDE 239
+ LH+AII + + M I + K DL +N + + PLH A EIA L +
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 69
Query: 240 DDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSY--PDSIEFLDKKNRN---ILHLAAQ 294
D L RD G +PLHLA E G L+ + L S P L N N LHLA+
Sbjct: 70 DPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126
Query: 295 NGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAA-INNHFNIVLILARNMRVN 347
+G+ +V + L D+ G T LHLA + N + L+L VN
Sbjct: 127 HGYLGIVELLVSLG--ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 19/195 (9%)
Query: 34 MSQNRDTALHIAARFGHKNVVMEIL-ELRPDL--VSVENHKSETPMHVAARAGNFGVAKI 90
++++ D+ LH+A K + ME++ +++ DL ++ +N+ +TP+H+A +A+
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 91 FMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRK-CDGKMA-FTMIRKDPEL---ICYI 145
+ G G D LR D GNTPLH A + C + T P L +
Sbjct: 64 LL---GAG-----CDPELR--DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT 113
Query: 146 NKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEA 205
N G + L LA G I ++ V N T LH+A+ N +++ +L+
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173
Query: 206 KRDLINVLDKRDRNP 220
D +N + + +P
Sbjct: 174 GAD-VNRVTYQGYSP 187
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
+D +G SP+H A+ G L LK L+ D + LD +HLA + GH++VV F++
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHSSVVSFLA- 129
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRV 346
PE + ++ D G TPL LA N++ IL +M +
Sbjct: 130 -PESD--LHHRDASGLTPLELARQRGAQNLMDILQGHMMI 166
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 193 KSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQ 252
++ F+ K+L +N LD P+H A GH + L+ E D + RD +G
Sbjct: 85 RTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESDL--HHRDASGL 142
Query: 253 SPLHLASENGKLSLL 267
+PL LA + G +L+
Sbjct: 143 TPLELARQRGAQNLM 157
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
TAL + FG V +E+L+ + +V++ +P+H AAR G K+ + HG
Sbjct: 46 TALQVMM-FGSPAVALELLK-QGASPNVQDASGTSPVHDAARTGFLDTLKVLVE-HGADV 102
Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGK-MAFTMIRKDPELICYINKAGQSPLSLAID 158
N D G+ P+H A+R+ ++F D + + + +G +PL LA
Sbjct: 103 NA---------LDSTGSLPIHLAIREGHSSVVSFLAPESD---LHHRDASGLTPLELARQ 150
Query: 159 AG 160
G
Sbjct: 151 RG 152
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N +D PLH AA GH EI L D A RD G++PLHLA+
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA--RDIWGRTPLHLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
G L +++ LL Y + DK + ++ NG+ ++ + KL
Sbjct: 89 TVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + +D LHLAA+ GH +V + K +N+ D+ G TPLHLA
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNARDIWGRTPLHLA 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
A H IV +L ++ A ++ +TA I
Sbjct: 88 ATVGHLEIVEVLLE-YGADVNAQDKFGKTAFDI 119
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + M T LH+AA+ GH +V +L+
Sbjct: 12 SDLGKKLLEATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTF 104
D V+ + TP+H+AA G+ + ++ + + N F
Sbjct: 71 AD-VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 74 TPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFT 133
TP+H+AA+ G+ + ++ ++ HG N +D G TPLH A ++
Sbjct: 49 TPLHLAAKRGHLEIVEVLLK-HGADVNA---------RDIWGRTPLHLAATVGHLEIVEV 98
Query: 134 MIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
++ ++ +K G++ ++ID G +A + K
Sbjct: 99 LLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQK 134
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMR 93
T LH+AA GH +V +LE D V+ ++ +T ++ GN +A+I +
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
+D +G SP+H A+ G L LK L+ D + LD +HLA + GH++VV F++
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHSSVVSFLA- 127
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNI 348
PE + ++ D G TPL LA N++ IL +M + +
Sbjct: 128 -PESD--LHHRDASGLTPLELARQRGAQNLMDILQGHMMIPM 166
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 193 KSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQ 252
++ F+ K+L +N LD P+H A GH + L+ E D + RD +G
Sbjct: 83 RTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESDL--HHRDASGL 140
Query: 253 SPLHLASENGKLSLL 267
+PL LA + G +L+
Sbjct: 141 TPLELARQRGAQNLM 155
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
TAL + FG V +E+L+ + +V++ +P+H AAR G K+ + HG
Sbjct: 44 TALQVMM-FGSPAVALELLK-QGASPNVQDASGTSPVHDAARTGFLDTLKVLVE-HGADV 100
Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGK-MAFTMIRKDPELICYINKAGQSPLSLAID 158
N D G+ P+H A+R+ ++F D + + + +G +PL LA
Sbjct: 101 NA---------LDSTGSLPIHLAIREGHSSVVSFLAPESD---LHHRDASGLTPLELARQ 148
Query: 159 AG 160
G
Sbjct: 149 RG 150
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 250 NGQSPLHLASENGKLSLLKRLL-HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLP 308
+G SPLH+A+ +G+ L+ LL H D+ LHLA Q GH VV L
Sbjct: 85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVP--LHLACQQGHFQVV---KCLL 139
Query: 309 EIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
+ N DL GNTPL A H +V +L ++ +I A+N K TAL
Sbjct: 140 DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH-GASINASNNKGNTAL 189
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 14/154 (9%)
Query: 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKR 269
+NV + +PLH AA G ++ L A R+ + PLHLA + G ++K
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKC 137
Query: 270 LLHSYPDSIEFLDKKN---RNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLH 326
LL DS +KK+ L A GH +V L + IN+S+ +GNT LH
Sbjct: 138 LL----DSNAKPNKKDLSGNTPLIYACSGGHHELVAL---LLQHGASINASNNKGNTALH 190
Query: 327 LAAINNH-FNIVLILARNMRVNIRATNEKKQTAL 359
A I H F + L+L V + N++++TA+
Sbjct: 191 EAVIEKHVFVVELLLLHGASVQV--LNKRQRTAV 222
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 27 NGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFG 86
+G G+ SQ+ + LH+AA G +++ +L+ + N P+H+A + G+F
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQ 133
Query: 87 VAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDG 128
V K + + N K+D GNTPL + C G
Sbjct: 134 VVKCLLDSNAKPN----------KKDLSGNTPL---IYACSG 162
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 14/186 (7%)
Query: 107 ILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPLSLAIDAGLTHI 164
+L ++D++G PLH +V ++ ++ K + L Y + +G +P +A G +
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 165 ACCI----IKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP 220
+ +K L+ + ++G +T LH+A+ K F V ++E + + DK ++ P
Sbjct: 88 VKSLYDRPLKPDLNKITNQG---VTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIP 143
Query: 221 LHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLH--LASENGKLSLLKRLLHSYPDSI 278
LH AA++G ++ L + +D G +PL LA +G ++L L+ Y
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LVEKYGAEY 201
Query: 279 EFLDKK 284
+ +D K
Sbjct: 202 DLVDNK 207
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 6/193 (3%)
Query: 116 NTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK--EKL 173
N PLH A + + ++ P L+ ++ G+ PL ++ I ++ E +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 174 SVLDHRGPNDLTLLHIAIIKSNFVVMAKILE--AKRDLINVLDKRDRNPLHYAAALGHFE 231
++ D+ + T HIA N V+ + + K DL N + + LH A FE
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFE 121
Query: 232 IACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHL 291
++ L + ++ + N Q PLH A+ G L L++ L ++ + DK+ L
Sbjct: 122 VSQFLIENGASVRIKDKFN-QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180
Query: 292 AAQNGHANVVVFI 304
A GH + V +
Sbjct: 181 ALAEGHGDAAVLL 193
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 254 PLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQ-NGHANVVVFISKLPEIED 312
PLH A + ++ LLHS P + D+ R LH + H +SK+ + +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV-N 63
Query: 313 MINSSDLEGNTPLHLAAINNHFNIV 337
+ + D G TP H+A + +V
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVV 88
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
Query: 8 LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
L +A + V+E + +L Q+ LH + F + +L + + V++
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNL 64
Query: 68 ENHKSE---TPMHVAARAGNFGVAK-IFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAV 123
+++ + TP H+A GN V K ++ RP L K +G T LH AV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRP---------LKPDLNKITNQGVTCLHLAV 115
Query: 124 RKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG---LTHIACCIIKEKLSVLDHRG 180
K +++ +I + +K Q PL A G L + C + K ++ D +G
Sbjct: 116 GKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 181 PNDL 184
L
Sbjct: 175 WTPL 178
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 14/186 (7%)
Query: 107 ILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPLSLAIDAGLTHI 164
+L ++D++G PLH +V ++ ++ K + L Y + +G +P +A G +
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 165 ACCI----IKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP 220
+ +K L+ + ++G +T LH+A+ K F V ++E + + DK ++ P
Sbjct: 88 VKSLYDRPLKPDLNKITNQG---VTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIP 143
Query: 221 LHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLH--LASENGKLSLLKRLLHSYPDSI 278
LH AA++G ++ L + +D G +PL LA +G ++L L+ Y
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LVEKYGAEY 201
Query: 279 EFLDKK 284
+ +D K
Sbjct: 202 DLVDNK 207
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 6/193 (3%)
Query: 116 NTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK--EKL 173
N PLH A + + ++ P L+ ++ G+ PL ++ I ++ E +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 174 SVLDHRGPNDLTLLHIAIIKSNFVVMAKILE--AKRDLINVLDKRDRNPLHYAAALGHFE 231
++ D+ + T HIA N V+ + + K DL N + + LH A FE
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFE 121
Query: 232 IACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHL 291
++ L + ++ + N Q PLH A+ G L L++ L ++ + DK+ L
Sbjct: 122 VSQFLIENGASVRIKDKFN-QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180
Query: 292 AAQNGHANVVVFI 304
A GH + V +
Sbjct: 181 ALAEGHGDAAVLL 193
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 254 PLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQ-NGHANVVVFISKLPEIED 312
PLH A + ++ LLHS P + D+ R LH + H +SK+ + +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV-N 63
Query: 313 MINSSDLEGNTPLHLAAINNHFNIV 337
+ + D G TP H+A + +V
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVV 88
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
Query: 8 LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
L +A + V+E + +L Q+ LH + F + +L + + V++
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNL 64
Query: 68 ENHKSE---TPMHVAARAGNFGVAK-IFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAV 123
+++ + TP H+A GN V K ++ RP L K +G T LH AV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRP---------LKPDLNKITNQGVTCLHLAV 115
Query: 124 RKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG---LTHIACCIIKEKLSVLDHRG 180
K +++ +I + +K Q PL A G L + C + K ++ D +G
Sbjct: 116 GKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 181 PNDL 184
L
Sbjct: 175 WTPL 178
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 14/186 (7%)
Query: 107 ILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPLSLAIDAGLTHI 164
+L ++D++G PLH +V ++ ++ K + L Y + +G +P +A G +
Sbjct: 28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 165 ACCI----IKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP 220
+ +K L+ + ++G +T LH+A+ K F V ++E + + DK ++ P
Sbjct: 88 VKSLYDRPLKPDLNKITNQG---VTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIP 143
Query: 221 LHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLH--LASENGKLSLLKRLLHSYPDSI 278
LH AA++G ++ L + +D G +PL LA +G ++L L+ Y
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LVEKYGAEY 201
Query: 279 EFLDKK 284
+ +D K
Sbjct: 202 DLVDNK 207
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 6/193 (3%)
Query: 116 NTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK--EKL 173
N PLH A + + ++ P L+ ++ G+ PL ++ I ++ E +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 174 SVLDHRGPNDLTLLHIAIIKSNFVVMAKILE--AKRDLINVLDKRDRNPLHYAAALGHFE 231
++ D+ + T HIA N V+ + + K DL N + + LH A FE
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFE 121
Query: 232 IACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHL 291
++ L + ++ +D Q PLH A+ G L L++ L ++ + DK+ L
Sbjct: 122 VSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180
Query: 292 AAQNGHANVVVFI 304
A GH + V +
Sbjct: 181 ALAEGHGDAAVLL 193
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 254 PLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQ-NGHANVVVFISKLPEIED 312
PLH A + ++ LLHS P + D+ R LH + H +SK+ + +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV-N 63
Query: 313 MINSSDLEGNTPLHLAAINNHFNIV 337
+ + D G TP H+A + +V
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVV 88
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
Query: 8 LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
L +A + V+E + +L Q+ LH + F + +L + + V++
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNL 64
Query: 68 ENHKSE---TPMHVAARAGNFGVAK-IFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAV 123
+++ + TP H+A GN V K ++ RP L K +G T LH AV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRP---------LKPDLNKITNQGVTCLHLAV 115
Query: 124 RKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG---LTHIACCIIKEKLSVLDHRG 180
K +++ +I + +K Q PL A G L + C + K ++ D +G
Sbjct: 116 GKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 181 PNDL 184
L
Sbjct: 175 WTPL 178
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 47/199 (23%)
Query: 205 AKRDLINVLDKRDRNPLHYAAALGHFEI-------ACRLSDEDDTLAYERDCNGQSPLHL 257
A + L D+ R LH+A + GH EI ++D+DD G SPLH+
Sbjct: 29 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 80
Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI---SKLPEIED-- 312
A+ G+ ++K LL + +++ LH AA + V + P+ +D
Sbjct: 81 AASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 139
Query: 313 ---------------MI----------NSSDLEGNTPLHLAAINNHFNIVLILARNMRVN 347
MI N D EGNTPLHLA +L + +
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV-SQGAS 198
Query: 348 IRATNEKKQTALAIVQPSL 366
I N++++T L + + L
Sbjct: 199 IYIENKEEKTPLQVAKGGL 217
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 34 MSQNRDTALHIAARFGHKNVVMEILE--LRPDLVSVENHKSETPMHVAARAGNFGVAKIF 91
++QN T LH AA + + +LE PD ++H T MH AA GN + I
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYEATAMHRAAAKGNLKMIHIL 159
Query: 92 MRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYI-NKAGQ 150
+ + N QD EGNTPLH A + + A ++ + + YI NK +
Sbjct: 160 LYYKASTN----------IQDTEGNTPLHLACDEERVEEAKLLVSQGASI--YIENKEEK 207
Query: 151 SPLSLA 156
+PL +A
Sbjct: 208 TPLQVA 213
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 93/237 (39%), Gaps = 51/237 (21%)
Query: 36 QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPH 95
Q+ TALH A GH +V +L+L V+ ++ +P+H+AA AG + K +
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALL--- 94
Query: 96 GNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSL 155
G G ++ G TPLH A K ++A ++ + G +P
Sbjct: 95 GKGAQVNAV-------NQNGCTPLHYAASKNRHEIAVMLL-----------EGGANP--- 133
Query: 156 AIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDK 215
D + + T +H A K N M IL + N+ D
Sbjct: 134 ---------------------DAKDHYEATAMHRAAAKGNL-KMIHILLYYKASTNIQDT 171
Query: 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSL-LKRLL 271
PLH A E A L + ++ Y + ++PL +A G L L LKR++
Sbjct: 172 EGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA--KGGLGLILKRMV 225
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 261 NGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL--PEIEDMINSSD 318
+GKL LK + + D+ +R LH A GH +V F+ +L P +N D
Sbjct: 17 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-----VNDKD 71
Query: 319 LEGNTPLHLAAINNHFNIV-LILARNMRVNIRATNEKKQTAL 359
G +PLH+AA IV +L + +VN A N+ T L
Sbjct: 72 DAGWSPLHIAASAGRDEIVKALLGKGAQVN--AVNQNGCTPL 111
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 12/162 (7%)
Query: 135 IRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKS 194
I D L ++ ++ L A AG T I +++ + V D + + LHIA
Sbjct: 27 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAG 85
Query: 195 NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL----SDEDDTLAYERDCN 250
++ K L K +N +++ PLHYAA+ EIA L ++ D YE
Sbjct: 86 RDEIV-KALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE---- 140
Query: 251 GQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLA 292
+ +H A+ G L ++ LL+ Y S D + LHLA
Sbjct: 141 -ATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLA 180
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-----GQSPL 255
+IL A +N +D PLH AA GH EI L L + D N G++PL
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL------LKHGADVNASDIWGRTPL 84
Query: 256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
HLA+ G L +++ LL Y + DK + ++ NG+ ++ + KL
Sbjct: 85 HLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + +D LHLAA+ GH +V + K +N+SD+ G TPLHLA
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNASDIWGRTPLHLA 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
A H IV +L ++ A ++ +TA I
Sbjct: 88 ATVGHLEIVEVLLE-YGADVNAQDKFGKTAFDI 119
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + M T LH+AA+ GH +V +L+
Sbjct: 12 SDLGKKLLEATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTF 104
D V+ + TP+H+AA G+ + ++ + + N F
Sbjct: 71 AD-VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMR 93
T LH+AA GH +V +LE D V+ ++ +T ++ GN +A+I +
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 74 TPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFT 133
TP+H+AA+ G+ + ++ ++ HG N D G TPLH A ++
Sbjct: 49 TPLHLAAKRGHLEIVEVLLK-HGADVNA---------SDIWGRTPLHLAATVGHLEIVEV 98
Query: 134 MIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
++ ++ +K G++ ++ID G +A + K
Sbjct: 99 LLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 47/199 (23%)
Query: 205 AKRDLINVLDKRDRNPLHYAAALGHFEI-------ACRLSDEDDTLAYERDCNGQSPLHL 257
A + L D+ R LH+A + GH EI ++D+DD G SPLH+
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 79
Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI---SKLPEIED-- 312
A+ G+ ++K LL + +++ LH AA + V + P+ +D
Sbjct: 80 AASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 313 ---------------MI----------NSSDLEGNTPLHLAAINNHFNIVLILARNMRVN 347
MI N D EGNTPLHLA +L + +
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV-SQGAS 197
Query: 348 IRATNEKKQTALAIVQPSL 366
I N++++T L + + L
Sbjct: 198 IYIENKEEKTPLQVAKGGL 216
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 34 MSQNRDTALHIAARFGHKNVVMEILE--LRPDLVSVENHKSETPMHVAARAGNFGVAKIF 91
++QN T LH AA + + +LE PD ++H T MH AA GN + I
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYEATAMHRAAAKGNLKMIHIL 158
Query: 92 MRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYI-NKAGQ 150
+ + N QD EGNTPLH A + + A ++ + + YI NK +
Sbjct: 159 LYYKASTN----------IQDTEGNTPLHLACDEERVEEAKLLVSQGASI--YIENKEEK 206
Query: 151 SPLSLA 156
+PL +A
Sbjct: 207 TPLQVA 212
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 93/237 (39%), Gaps = 51/237 (21%)
Query: 36 QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPH 95
Q+ TALH A GH +V +L+L V+ ++ +P+H+AA AG + K +
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALL--- 93
Query: 96 GNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSL 155
G G ++ G TPLH A K ++A ++ + G +P
Sbjct: 94 GKGAQVNAV-------NQNGCTPLHYAASKNRHEIAVMLL-----------EGGANP--- 132
Query: 156 AIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDK 215
D + + T +H A K N M IL + N+ D
Sbjct: 133 ---------------------DAKDHYEATAMHRAAAKGNL-KMIHILLYYKASTNIQDT 170
Query: 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSL-LKRLL 271
PLH A E A L + ++ Y + ++PL +A G L L LKR++
Sbjct: 171 EGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA--KGGLGLILKRMV 224
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 261 NGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL--PEIEDMINSSD 318
+GKL LK + + D+ +R LH A GH +V F+ +L P +N D
Sbjct: 16 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-----VNDKD 70
Query: 319 LEGNTPLHLAAINNHFNIV-LILARNMRVNIRATNEKKQTAL 359
G +PLH+AA IV +L + +VN A N+ T L
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLGKGAQVN--AVNQNGCTPL 110
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 12/162 (7%)
Query: 135 IRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKS 194
I D L ++ ++ L A AG T I +++ + V D + + LHIA
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAG 84
Query: 195 NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL----SDEDDTLAYERDCN 250
++ K L K +N +++ PLHYAA+ EIA L ++ D YE
Sbjct: 85 RDEIV-KALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE---- 139
Query: 251 GQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLA 292
+ +H A+ G L ++ LL+ Y S D + LHLA
Sbjct: 140 -ATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLA 179
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
+D +G SP+H A+ G L LK L+ D + D +HLA Q GH VV F++
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNM 344
E ++ D G TPL LA ++V IL +M
Sbjct: 123 ----ESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 145 INKAGQSPLSLAIDAGLTHIACCIIKEKLS--VLDHRGPNDLTLLHIAIIKSNFVVMAKI 202
+N+ G++ L + + G T IA ++K+ S V D G + + H A ++ F+ K+
Sbjct: 32 LNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPV---HDAA-RTGFLDTLKV 86
Query: 203 LEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENG 262
L +NV D P+H A GH + L+ E D + RD G +PL LA + G
Sbjct: 87 LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDL--HRRDARGLTPLELALQRG 144
Query: 263 KLSLL 267
L+
Sbjct: 145 AQDLV 149
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
TAL + FG + +E+L+ + +V++ +P+H AAR G K+ + HG
Sbjct: 38 TALQVMM-FGSTAIALELLK-QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADV 94
Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA 159
N D G P+H AV+ +G A + + G +PL LA+
Sbjct: 95 NV---------PDGTGALPIHLAVQ--EGHTAVVSFLAAESDLHRRDARGLTPLELALQR 143
Query: 160 G 160
G
Sbjct: 144 G 144
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
+D +G SP+H A+ G L LK L+ D + D +HLA Q GH VV F++
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA 128
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNM 344
E ++ D G TPL LA ++V IL +M
Sbjct: 129 ----ESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 162
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 145 INKAGQSPLSLAIDAGLTHIACCIIKEKLS--VLDHRGPNDLTLLHIAIIKSNFVVMAKI 202
+N+ G++ L + + G T IA ++K+ S V D G + + H A ++ F+ K+
Sbjct: 38 LNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPV---HDAA-RTGFLDTLKV 92
Query: 203 LEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENG 262
L +NV D P+H A GH + L+ E D + RD G +PL LA + G
Sbjct: 93 LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDL--HRRDARGLTPLELALQRG 150
Query: 263 KLSLL 267
L+
Sbjct: 151 AQDLV 155
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
TAL + FG + +E+L+ + +V++ +P+H AAR G K+ + HG
Sbjct: 44 TALQVMM-FGSTAIALELLK-QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADV 100
Query: 100 NTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDA 159
N D G P+H AV+ +G A + + G +PL LA+
Sbjct: 101 NV---------PDGTGALPIHLAVQ--EGHTAVVSFLAAESDLHRRDARGLTPLELALQR 149
Query: 160 G 160
G
Sbjct: 150 G 150
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-----GQSPL 255
+IL A +N +D PLH AA GH EI L L + D N G++PL
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL------LKHGADVNASDSWGRTPL 84
Query: 256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
HLA+ G L +++ LL Y + DK + ++ NG+ ++ + KL
Sbjct: 85 HLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + +D LHLAA+ GH +V + K +N+SD G TPLHLA
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNASDSWGRTPLHLA 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
A H IV +L ++ A ++ +TA I
Sbjct: 88 ATVGHLEIVEVLLE-YGADVNAQDKFGKTAFDI 119
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + M T LH+AA+ GH +V +L+
Sbjct: 12 SDLGKKLLEATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTF 104
D V+ + TP+H+AA G+ + ++ + + N F
Sbjct: 71 AD-VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL 243
+T LH+A + + ++ +L+ D +N D R PLH AA +GH EI L L
Sbjct: 48 VTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVL------L 100
Query: 244 AYERDCNGQ 252
Y D N Q
Sbjct: 101 EYGADVNAQ 109
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 74 TPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFT 133
TP+H+AA+ G+ + ++ ++ HG N D G TPLH A ++
Sbjct: 49 TPLHLAAKRGHLEIVEVLLK-HGADVNA---------SDSWGRTPLHLAATVGHLEIVEV 98
Query: 134 MIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
++ ++ +K G++ ++ID G +A + K
Sbjct: 99 LLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQK 134
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMR 93
T LH+AA GH +V +LE D V+ ++ +T ++ GN +A+I +
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 177 DHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRL 236
+HRG TLLHIA IK + + +L+ D NV D PLH A GH ++ L
Sbjct: 7 NHRGE---TLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 237 SDED---DTLAYERDCNGQSPLHLASENGKLSLLKRLL 271
+T Y+ D SPLH A++NG + ++K LL
Sbjct: 63 LQHKALVNTTGYQND----SPLHDAAKNGHVDIVKLLL 96
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 251 GQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEI 310
G++ LH+AS G + ++ LL + D D LH A +GH VV L +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVEL---LLQH 65
Query: 311 EDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
+ ++N++ + ++PLH AA N H +IV +L
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFM 92
T LH A GH VV E+L LV+ +++++P+H AA+ G+ + K+ +
Sbjct: 45 TPLHEACNHGHLKVV-ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI 304
+D G +PLH A +G L +++ LL + + +N + LH AA+NGH ++V +
Sbjct: 39 KDHAGWTPLHEACNHGHLKVVELLL-QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 30 GILDMSQNR-DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVA 88
GI + +R +T LHIA+ G V +L+ D +V++H TP+H A G+ V
Sbjct: 1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVV 59
Query: 89 KIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVR 124
++ ++ N TG +D +PLH+A +
Sbjct: 60 ELLLQHKALVNTTGYQND----------SPLHDAAK 85
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 8 LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
L A R G +A V E + G I M++ DT LH+AA GH+++V ++L+ + D+ +V
Sbjct: 38 LHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 96
Query: 68 ENHKSETPMHVAARAGNFGVAK 89
H P+H A G VA+
Sbjct: 97 NEH-GNVPLHYACFWGQDQVAE 117
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
D +G SPLH A G+ ++++ L+ I +++ + LHLAA +GH ++V KL
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDTPLHLAASHGHRDIV---QKL 86
Query: 308 PEIEDMINSSDLEGNTPLHLAAI 330
+ + IN+ + GN PLH A
Sbjct: 87 LQYKADINAVNEHGNVPLHYACF 109
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 187 LHIAIIKS-NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAY 245
LH A + + VV I+ R INV+++ D PLH AA+ GH +I +L L Y
Sbjct: 38 LHWACREGRSAVVEMLIMRGAR--INVMNRGDDTPLHLAASHGHRDIVQKL------LQY 89
Query: 246 ERDCN-----GQSPLHLASENGKLSLLKRLL 271
+ D N G PLH A G+ + + L+
Sbjct: 90 KADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 149 GQSPLSLAIDAGLTHIACCIIKE--KLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAK 206
G SPL A G + + +I +++V++ RG D T LH+A + ++ K+L+ K
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMN-RG--DDTPLHLAASHGHRDIVQKLLQYK 90
Query: 207 RDLINVLDKRDRNPLHYAAALGHFEIA 233
D IN +++ PLHYA G ++A
Sbjct: 91 AD-INAVNEHGNVPLHYACFWGQDQVA 116
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 289 LHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNI 348
LH A + G + VV + +++N D +TPLHLAA + H +IV L + + +I
Sbjct: 38 LHWACREGRSAVVEMLIMRGARINVMNRGD---DTPLHLAASHGHRDIVQKLLQ-YKADI 93
Query: 349 RATNEKKQTAL 359
A NE L
Sbjct: 94 NAVNEHGNVPL 104
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 8 LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV 67
L A R G +A V E + G I M++ DT LH+AA GH+++V ++L+ + D+ +V
Sbjct: 43 LHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101
Query: 68 ENHKSETPMHVAARAGNFGVAK 89
H P+H A G VA+
Sbjct: 102 NEH-GNVPLHYACFWGQDQVAE 122
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
D +G SPLH A G+ ++++ L+ I +++ + LHLAA +GH ++V KL
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDTPLHLAASHGHRDIV---QKL 91
Query: 308 PEIEDMINSSDLEGNTPLHLAAI 330
+ + IN+ + GN PLH A
Sbjct: 92 LQYKADINAVNEHGNVPLHYACF 114
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 14/94 (14%)
Query: 184 LTLLHIAIIKS-NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDT 242
+ LH A + + VV I+ R INV+++ D PLH AA+ GH +I +L
Sbjct: 40 FSPLHWACREGRSAVVEMLIMRGAR--INVMNRGDDTPLHLAASHGHRDIVQKL------ 91
Query: 243 LAYERDCN-----GQSPLHLASENGKLSLLKRLL 271
L Y+ D N G PLH A G+ + + L+
Sbjct: 92 LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 149 GQSPLSLAIDAGLTHIACCIIKE--KLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAK 206
G SPL A G + + +I +++V++ RG D T LH+A + ++ K+L+ K
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMN-RG--DDTPLHLAASHGHRDIVQKLLQYK 95
Query: 207 RDLINVLDKRDRNPLHYAAALGHFEIA 233
D IN +++ PLHYA G ++A
Sbjct: 96 AD-INAVNEHGNVPLHYACFWGQDQVA 121
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 289 LHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNI 348
LH A + G + VV + +++N D +TPLHLAA + H +IV L + + +I
Sbjct: 43 LHWACREGRSAVVEMLIMRGARINVMNRGD---DTPLHLAASHGHRDIVQKLLQ-YKADI 98
Query: 349 RATNEKKQTAL 359
A NE L
Sbjct: 99 NAVNEHGNVPL 109
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S R L A + GD TV++ + D+ + T LH AA + +VV +L+
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D V ++ P+H A G++ VA++ ++ HG ++ D TPLH
Sbjct: 66 AD-VHAKDKGGLVPLHNACSYGHYEVAELLVK-HGA---------VVNVADLWKFTPLHE 114
Query: 122 AVRKCDGKMAFTMIR--KDPELICYINKAGQSPLSLAIDA 159
A K ++ +++ DP N+ G +PL L D
Sbjct: 115 AAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDLVKDG 151
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 247 RDCNGQ--SPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI 304
RD G+ +PLH A+ ++S+++ LL D + DK LH A GH V +
Sbjct: 36 RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELL 94
Query: 305 SKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
K + +N +DL TPLH AA + I +L
Sbjct: 95 VKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLL 127
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA 244
T LH A + V+ +L+ D ++ DK PLH A + GH+E+A L + +
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVV 101
Query: 245 YERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRN 287
D +PLH A+ GK + K LL D KKNR+
Sbjct: 102 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT----KKNRD 140
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL 243
L LH A ++ V A++L ++NV D PLH AAA G +EI C+L +
Sbjct: 76 LVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI-CKLLLQHGAD 133
Query: 244 AYERDCNGQSPLHLASEN 261
+++ +G +PL L +
Sbjct: 134 PTKKNRDGNTPLDLVKDG 151
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S R L A + GD TV++ + D+ + T LH AA + +VV +L+
Sbjct: 10 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 69
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D V ++ P+H A G++ VA++ ++ HG ++ D TPLH
Sbjct: 70 AD-VHAKDKGGLVPLHNACSYGHYEVAELLVK-HGA---------VVNVADLWKFTPLHE 118
Query: 122 AVRKCDGKMAFTMIR--KDPELICYINKAGQSPLSLAIDA 159
A K ++ +++ DP N+ G +PL L D
Sbjct: 119 AAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDLVKDG 155
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 247 RDCNGQ--SPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI 304
RD G+ +PLH A+ ++S+++ LL D + DK LH A GH V +
Sbjct: 40 RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELL 98
Query: 305 SKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
K + +N +DL TPLH AA + I +L
Sbjct: 99 VKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLL 131
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA 244
T LH A + V+ +L+ D ++ DK PLH A + GH+E+A L + +
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVV 105
Query: 245 YERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRN 287
D +PLH A+ GK + K LL D KKNR+
Sbjct: 106 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT----KKNRD 144
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL 243
L LH A ++ V A++L ++NV D PLH AAA G +EI C+L +
Sbjct: 80 LVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI-CKLLLQHGAD 137
Query: 244 AYERDCNGQSPLHLASEN 261
+++ +G +PL L +
Sbjct: 138 PTKKNRDGNTPLDLVKDG 155
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S R L A + GD TV++ + D+ + T LH AA + +VV +L+
Sbjct: 8 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 67
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHN 121
D V ++ P+H A G++ VA++ ++ HG ++ D TPLH
Sbjct: 68 AD-VHAKDKGGLVPLHNACSYGHYEVAELLVK-HGA---------VVNVADLWKFTPLHE 116
Query: 122 AVRKCDGKMAFTMIR--KDPELICYINKAGQSPLSLAIDA 159
A K ++ +++ DP N+ G +PL L D
Sbjct: 117 AAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDLVKDG 153
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 247 RDCNGQ--SPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI 304
RD G+ +PLH A+ ++S+++ LL D + DK LH A GH V +
Sbjct: 38 RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELL 96
Query: 305 SKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
K + +N +DL TPLH AA + I +L
Sbjct: 97 VKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLL 129
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLA 244
T LH A + V+ +L+ D ++ DK PLH A + GH+E+A L + +
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVV 103
Query: 245 YERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRN 287
D +PLH A+ GK + K LL D KKNR+
Sbjct: 104 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT----KKNRD 142
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL 243
L LH A ++ V A++L ++NV D PLH AAA G +EI C+L +
Sbjct: 78 LVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI-CKLLLQHGAD 135
Query: 244 AYERDCNGQSPLHLASEN 261
+++ +G +PL L +
Sbjct: 136 PTKKNRDGNTPLDLVKDG 153
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYP 275
+ R LHYAA + + I L E + ++D +G++P+ LA++ G++ ++ L+
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 276 DSIEFLDKKNRNILHLAAQNGHANVV-VFISKLPEIE 311
S+E +D + LA N H N+V +F PE E
Sbjct: 338 -SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 251 GQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEI 310
G++ LH A++ ++K L+ + + D+ + + LAAQ G VV ++ +
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 311 EDMINSSDLEGNTPLHLAAINNHFNIVLILAR 342
+ ++++D +T LA NNH NIV I R
Sbjct: 339 VEAVDATD---HTARQLAQANNHHNIVDIFDR 367
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 23 SARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSV----------ENHKS 72
S +L G+ I ++ +N TAL I A ++ V L V E +K
Sbjct: 221 STKLKGD-IEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG 279
Query: 73 ETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPL 119
T +H AA+ N + K + G+ + KQDE+G TP+
Sbjct: 280 RTALHYAAQVSNXPIVKYLVGEKGSNKD---------KQDEDGKTPI 317
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 47/199 (23%)
Query: 205 AKRDLINVLDKRDRNPLHYAAALGHFEI-------ACRLSDEDDTLAYERDCNGQSPLHL 257
A + L D+ R LH+A + GH EI ++D+DD G SPLH+
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 79
Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI---SKLPEIEDMI 314
A+ G+ ++K LL + +++ LH AA + V + P+ +D
Sbjct: 80 AASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 315 NSS---------------------------DLEGNTPLHLAAINNHFNIVLILARNMRVN 347
+++ D EGNTPLHLA L +
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQGAS 197
Query: 348 IRATNEKKQTALAIVQPSL 366
I N++++T L + + L
Sbjct: 198 IYIENKEEKTPLQVAKGGL 216
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 51/236 (21%)
Query: 36 QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPH 95
Q+ TALH A GH +V +L+L V+ ++ +P+H+AA AG + K +
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 96 GNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSL 155
+ N ++ G TPLH A K ++A ++ + G +P
Sbjct: 97 AHVNAV----------NQNGCTPLHYAASKNRHEIAVMLL-----------EGGANP--- 132
Query: 156 AIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDK 215
D + D T +H A K N M IL + N+ D
Sbjct: 133 ---------------------DAKDHYDATAMHRAAAKGNL-KMVHILLFYKASTNIQDT 170
Query: 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSL-LKRL 270
PLH A E A L + ++ Y + ++PL +A G L L LKRL
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVA--KGGLGLILKRL 223
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 34 MSQNRDTALHIAARFGHKNVVMEILE--LRPDLVSVENHKSETPMHVAARAGNFGVAKIF 91
++QN T LH AA + + +LE PD ++H T MH AA GN + I
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 92 MRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYI-NKAGQ 150
+ + N QD EGNTPLH A + + A ++ + + YI NK +
Sbjct: 159 LFYKASTN----------IQDTEGNTPLHLACDEERVEEAKFLVTQGASI--YIENKEEK 206
Query: 151 SPLSLA 156
+PL +A
Sbjct: 207 TPLQVA 212
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 261 NGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL--PEIEDMINSSD 318
+GKL LK + + D+ +R LH A GH +V F+ +L P +N D
Sbjct: 16 SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-----VNDKD 70
Query: 319 LEGNTPLHLAAINNHFNIV-LILARNMRVNIRATNEKKQTAL 359
G +PLH+AA IV +L + VN A N+ T L
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLVKGAHVN--AVNQNGCTPL 110
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 4/158 (2%)
Query: 135 IRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKS 194
I D L ++ ++ L A AG T I +++ + V D + + LHIA
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAG 84
Query: 195 NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSP 254
++ K L K +N +++ PLHYAA+ EIA L E +D +
Sbjct: 85 RDEIV-KALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYDATA 142
Query: 255 LHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLA 292
+H A+ G L ++ LL Y S D + LHLA
Sbjct: 143 MHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLA 179
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 76/199 (38%), Gaps = 47/199 (23%)
Query: 205 AKRDLINVLDKRDRNPLHYAAALGHFEI-------ACRLSDEDDTLAYERDCNGQSPLHL 257
A + L D+ R LH+A + GH EI ++D+DD G SPLH+
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 79
Query: 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI---SKLPEIEDMI 314
A+ G ++K LL + +++ LH AA + V + P+ +D
Sbjct: 80 AASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 315 NSS---------------------------DLEGNTPLHLAAINNHFNIVLILARNMRVN 347
+++ D EGNTPLHLA L +
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQGAS 197
Query: 348 IRATNEKKQTALAIVQPSL 366
I N++++T L + + L
Sbjct: 198 IYIENKEEKTPLQVAKGGL 216
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 51/236 (21%)
Query: 36 QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPH 95
Q+ TALH A GH +V +L+L V+ ++ +P+H+AA AG + K +
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 96 GNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSL 155
+ N ++ G TPLH A K ++A ++ + G +P
Sbjct: 97 AHVNAV----------NQNGCTPLHYAASKNRHEIAVMLL-----------EGGANP--- 132
Query: 156 AIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDK 215
D + D T +H A K N M IL + N+ D
Sbjct: 133 ---------------------DAKDHYDATAMHRAAAKGNL-KMVHILLFYKASTNIQDT 170
Query: 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSL-LKRL 270
PLH A E A L + ++ Y + ++PL +A G L L LKRL
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVA--KGGLGLILKRL 223
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 34 MSQNRDTALHIAARFGHKNVVMEILE--LRPDLVSVENHKSETPMHVAARAGNFGVAKIF 91
++QN T LH AA + + +LE PD ++H T MH AA GN + I
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 92 MRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYI-NKAGQ 150
+ + N QD EGNTPLH A + + A ++ + + YI NK +
Sbjct: 159 LFYKASTN----------IQDTEGNTPLHLACDEERVEEAKFLVTQGASI--YIENKEEK 206
Query: 151 SPLSLA 156
+PL +A
Sbjct: 207 TPLQVA 212
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 261 NGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL--PEIEDMINSSD 318
+GKL LK + + D+ +R LH A GH +V F+ +L P +N D
Sbjct: 16 SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-----VNDKD 70
Query: 319 LEGNTPLHLAAINNHFNIV-LILARNMRVNIRATNEKKQTAL 359
G +PLH+AA IV +L + VN A N+ T L
Sbjct: 71 DAGWSPLHIAASAGXDEIVKALLVKGAHVN--AVNQNGCTPL 110
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 4/158 (2%)
Query: 135 IRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKS 194
I D L ++ ++ L A AG T I +++ + V D + + LHIA +
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAA-SA 83
Query: 195 NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSP 254
+ K L K +N +++ PLHYAA+ EIA L E +D +
Sbjct: 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYDATA 142
Query: 255 LHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLA 292
+H A+ G L ++ LL Y S D + LHLA
Sbjct: 143 MHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLA 179
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 5/146 (3%)
Query: 217 DRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPD 276
D +H AA G + + D L + D G +PL AS G++ ++ LL D
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 277 SIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNI 336
L K+ + L LA+ G+ ++V L E + IN D G TPL A NH
Sbjct: 62 P-HILAKERESALSLASTGGYTDIVGL---LLERDVDINIYDWNGGTPLLYAVRGNHVKC 117
Query: 337 V-LILARNMRVNIRATNEKKQTALAI 361
V +LAR + A + LA+
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAV 143
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 11/132 (8%)
Query: 105 DDILRKQDEEGNTPL--HNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLT 162
D+++ K DE G TPL +A + + DP ++ K +S LSLA G T
Sbjct: 26 DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA---KERESALSLASTGGYT 82
Query: 163 HIACCIIKE--KLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP 220
I +++ +++ D G L + ++ N V + L A+ + P
Sbjct: 83 DIVGLLLERDVDINIYDWNGGTPL----LYAVRGNHVKCVEALLARGADLTTEADSGYTP 138
Query: 221 LHYAAALGHFEI 232
+ A ALG+ ++
Sbjct: 139 MDLAVALGYRKV 150
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 5/146 (3%)
Query: 217 DRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPD 276
D +H AA G + + D L + D G +PL AS G++ ++ LL D
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 277 SIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNI 336
L K+ + L LA+ G+ ++V L E + IN D G TPL A NH
Sbjct: 62 P-HILAKERESALSLASTGGYTDIVGL---LLERDVDINIYDWNGGTPLLYAVHGNHVKC 117
Query: 337 V-LILARNMRVNIRATNEKKQTALAI 361
V +LAR + A + LA+
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAV 143
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 105 DDILRKQDEEGNTPL--HNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLT 162
D+++ K DE G TPL +A + + DP ++ K +S LSLA G T
Sbjct: 26 DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA---KERESALSLASTGGYT 82
Query: 163 HIACCIIKE--KLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP 220
I +++ +++ D G L + + N V + L A+ + P
Sbjct: 83 DIVGLLLERDVDINIYDWNGGTPL----LYAVHGNHVKCVEALLARGADLTTEADSGYTP 138
Query: 221 LHYAAALGHFEI 232
+ A ALG+ ++
Sbjct: 139 MDLAVALGYRKV 150
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 262 GKLSLLKRLL--HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
G + +RLL + PD D+ ++H AA+ G + + L E + +N D
Sbjct: 48 GNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGQLDT---LQTLLEFQADVNIEDN 101
Query: 320 EGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTA 358
EGN PLHLAA H +V L ++ N+ N K TA
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
+D G + +H A+ G+L L+ LL D + D + LHLAA+ GH VV F+ K
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN 343
+ + +G+T LA + +V ++ N
Sbjct: 125 --HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N D++ PLH AA H EI L D A++ D G +PLHLA+
Sbjct: 31 RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND--GSTPLHLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
G L +++ LL D + DK + ++ NG+ ++ + KL
Sbjct: 89 LFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + D+K LHLAA H +V + K +N+ D +G+TPLHLA
Sbjct: 31 RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA---DVNAHDNDGSTPLHLA 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
A+ H IV +L ++ ++ A ++ +TA I
Sbjct: 88 ALFGHLEIVEVLLKH-GADVNAQDKFGKTAFDI 119
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 2 STVARVLFRALRRGDAATVR----ESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEI 57
S + + L A R G VR A +N N + +T LH+AA + H +V +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAN-----DRKGNTPLHLAADYDHLEIVEVL 66
Query: 58 LELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
L+ D V+ ++ TP+H+AA G+ + ++ ++ HG
Sbjct: 67 LKHGAD-VNAHDNDGSTPLHLAALFGHLEIVEVLLK-HG 103
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMR 93
T LH+AA FGH +V +L+ D V+ ++ +T ++ GN +A+I +
Sbjct: 82 TPLHLAALFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 262 GKLSLLKRLL--HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
G + +RLL + PD D+ ++H AA+ G + + L E + +N D
Sbjct: 48 GNPEIARRLLLRGANPD---LKDRTGNAVIHDAARAGFLDT---LQTLLEFQADVNIEDN 101
Query: 320 EGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTA 358
EGN PLHLAA H +V L ++ N+ N K TA
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
+D G + +H A+ G L L+ LL D + D + LHLAA+ GH VV F+ K
Sbjct: 66 KDRTGNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN 343
+ + +G+T LA + +V ++ N
Sbjct: 125 --HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-----GQSPL 255
+IL A +N D PLH AA LGH EI L L D N G++PL
Sbjct: 31 RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVL------LKNGADVNATGNTGRTPL 84
Query: 256 HLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
HLA+ L +++ LL D + DK + ++ NG+ ++ + KL
Sbjct: 85 HLAAWADHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 314 INSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLH 367
+N++D G+TPLHLAA+ H IV +L +N ++ AT +T L + + H
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKN-GADVNATGNTGRTPLHLAAWADH 92
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + D LHLAA GH +V + L D +N++ G TPLHLA
Sbjct: 31 RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVL--LKNGAD-VNATGNTGRTPLHLA 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
A +H IV +L ++ ++ A ++ +TA I
Sbjct: 88 AWADHLEIVEVLLKH-GADVNAQDKFGKTAFDI 119
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNR---DTALHIAARFGHKNVVMEIL 58
S + + L A R G VR L NG D++ N T LH+AA GH +V +L
Sbjct: 12 SDLGKKLLEAARAGQDDEVR---ILTANGA-DVNANDYWGHTPLHLAAMLGHLEIVEVLL 67
Query: 59 ELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
+ D V+ + TP+H+AA A + + ++ ++ HG
Sbjct: 68 KNGAD-VNATGNTGRTPLHLAAWADHLEIVEVLLK-HG 103
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 45 AARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTF 104
AAR G + V IL V+ ++ TP+H+AA G+ + ++ ++ + N TG
Sbjct: 21 AARAGQDDEV-RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGN- 78
Query: 105 DDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI 164
G TPLH A ++ +++ ++ +K G++ ++ID G +
Sbjct: 79 ---------TGRTPLHLAAWADHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 128
Query: 165 ACCIIK 170
A + K
Sbjct: 129 AEILQK 134
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 92/244 (37%), Gaps = 39/244 (15%)
Query: 157 IDAGLTHIACCIIKEKLSVLD--HRGPN-------DLTLLHIAIIKSNFVVMAKILEAKR 207
D G +A C + VL RG + LT LH A I N V M K L
Sbjct: 38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN-VDMVKFLVENG 96
Query: 208 DLINVLDKRDRNPLHYAAALGHFEIACRL----------SDEDDT-----------LAYE 246
IN D PLH AA+ G+ +IA L + E DT +
Sbjct: 97 ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLD----KKNRNILHLAAQNGHANVVV 302
+ N Q A+ + ++ R + +S D K LH+AA G+ V+
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 303 FISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIV 362
L + +N D +G TPLH AA IL N+ ++ A N+ QTA +
Sbjct: 217 L---LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVA 272
Query: 363 QPSL 366
+
Sbjct: 273 DEDI 276
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMR 93
TALH+AA G+ V+ +++ R D V+++++ TP+H AA G +I +
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVE 253
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 262 GKLSLLKRLL--HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
G + +RLL + PD D+ ++H AA+ G + + L E + +N D
Sbjct: 48 GNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGFLDT---LQTLLEFQADVNIEDN 101
Query: 320 EGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTA 358
EGN PLHLAA H +V L ++ N+ N K TA
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
+D G + +H A+ G L L+ LL D + D + LHLAA+ GH VV F+ K
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN 343
+ + +G+T LA + +V ++ N
Sbjct: 125 --HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 262 GKLSLLKRLL--HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
G + +RLL + PD D+ ++H AA+ G + + L E + +N D
Sbjct: 48 GNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGFLDT---LQTLLEFQADVNIEDN 101
Query: 320 EGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTA 358
EGN PLHLAA H +V L ++ N+ N K TA
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
+D G + +H A+ G L L+ LL D + D + LHLAA+ GH VV F+ K
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 307 LPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN 343
+ + +G+T LA + +V ++ N
Sbjct: 125 --HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 18/203 (8%)
Query: 39 DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNG 98
+TALH+AAR+ + +LE D ++++ TP+H A A GV +I +R
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHAAVSADAQGVFQILLR----- 76
Query: 99 NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAID 158
N D + +G TPL A R M +I + + ++ G+S L A
Sbjct: 77 NRATDLDARM----HDGTTPLILAARLALEGMLEDLINSHAD-VNAVDDLGKSALHWAAA 131
Query: 159 AGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILE--AKRDLINVLDKR 216
A ++K + D + + T L +A + ++ +L+ A RD + D
Sbjct: 132 VNNVDAAVVLLKNGANK-DMQNNKEETPLFLAAREGSYETAKVLLDHFANRD---ITDHM 187
Query: 217 DRNPLHYAAALGHFEIACRLSDE 239
DR P A H +I RL DE
Sbjct: 188 DRLPRDIAQERMHHDI-VRLLDE 209
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 242 TLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV 301
+L + D G++ LHLA+ + KRLL + D+ D R LH AA + A V
Sbjct: 13 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-XIQDNMGRTPLH-AAVSADAQGV 70
Query: 302 VFISKLPEIEDMINSSDLEGNTPLHLAA 329
I D+ ++ +G TPL LAA
Sbjct: 71 FQILLRNRATDL-DARMHDGTTPLILAA 97
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 18/203 (8%)
Query: 39 DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNG 98
+TALH+AAR+ + +LE D +++++ TP+H A A GV +I +R
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR----- 79
Query: 99 NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAID 158
N D + +G TPL A R M +I + + ++ G+S L A
Sbjct: 80 NRATDLDARM----HDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAA 134
Query: 159 AGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILE--AKRDLINVLDKR 216
A ++K + D + + T L +A + ++ +L+ A RD + D
Sbjct: 135 VNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFANRD---ITDHM 190
Query: 217 DRNPLHYAAALGHFEIACRLSDE 239
DR P A H +I RL DE
Sbjct: 191 DRLPRDIAQERMHHDI-VRLLDE 212
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 242 TLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV 301
+L + D G++ LHLA+ + KRLL + D+ D R LH AA + A V
Sbjct: 16 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLH-AAVSADAQGV 73
Query: 302 VFISKLPEIEDMINSSDLEGNTPLHLAA 329
I D+ ++ +G TPL LAA
Sbjct: 74 FQILIRNRATDL-DARMHDGTTPLILAA 100
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 221 LHYAAALGH-FEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIE 279
+H AA G +A R+ E + + D G +PL A+ +G++++++ LL + D +
Sbjct: 7 VHQLAAQGEMLYLATRI--EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-Q 63
Query: 280 FLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLI 339
L K + L LA G+ ++V L + +N D G TPL A NH V +
Sbjct: 64 LLGKGRESALSLACSKGYTDIV---KMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120
Query: 340 L 340
L
Sbjct: 121 L 121
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 290 HLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN 343
LAAQ +++++ E E++IN +D EG TPL AA + +V L +N
Sbjct: 9 QLAAQG----EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 11/129 (8%)
Query: 105 DDILRKQDEEGNTPLHNAVRKCDGKMAFTMI----RKDPELICYINKAGQSPLSLAIDAG 160
++++ DEEG TPL A G++A DP+L + K +S LSLA G
Sbjct: 26 ENVINHTDEEGFTPLMWAAAH--GQIAVVEFLLQNGADPQL---LGKGRESALSLACSKG 80
Query: 161 LTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP 220
T I ++ + V ++ LL+ + N V K+L + N
Sbjct: 81 YTDIVKMLLDCGVDVNEYDWNGGTPLLY--AVHGNHVKCVKMLLESGADPTIETDSGYNS 138
Query: 221 LHYAAALGH 229
+ A ALG+
Sbjct: 139 MDLAVALGY 147
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 18/203 (8%)
Query: 39 DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNG 98
+TALH+AAR+ + +LE D +++++ TP+H A A GV +I +R
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR----- 112
Query: 99 NNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAID 158
N D R D G TPL A R M +I + + ++ G+S L A
Sbjct: 113 NRATDLD--ARMHD--GTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAA 167
Query: 159 AGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILE--AKRDLINVLDKR 216
A ++K + D + + T L +A + ++ +L+ A RD + D
Sbjct: 168 VNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFANRD---ITDHM 223
Query: 217 DRNPLHYAAALGHFEIACRLSDE 239
DR P A H +I RL DE
Sbjct: 224 DRLPRDIAQERMHHDI-VRLLDE 245
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 242 TLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV 301
+L + D G++ LHLA+ + KRLL + D+ D R LH AA + A V
Sbjct: 49 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLH-AAVSADAQGV 106
Query: 302 VFISKLPEIEDMINSSDLEGNTPLHLAA 329
I D+ ++ +G TPL LAA
Sbjct: 107 FQILIRNRATDL-DARMHDGTTPLILAA 133
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 144 YINKAGQSPLSLAIDAGLTHIACCIIK--EKLSVLDHRGPNDLTLLHIAIIKSNFVVMAK 201
Y + ++PL +A G+ + +++ +KL D G L I +K+N + +A+
Sbjct: 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTAL----IWAVKNNRLGIAE 85
Query: 202 ILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASEN 261
L +K +N D + PL ++ G+ E++ L + + +R+ G++PL +AS+
Sbjct: 86 KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKY 144
Query: 262 GKLSLLKRLLH 272
G+ ++K+LL
Sbjct: 145 GRSEIVKKLLE 155
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 209 LINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK 268
L N D +R PL A LG +L + D L ++D G + L A +N +L + +
Sbjct: 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAE 85
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
+LL S ++ D + L + G++ + F L E +N +LEG TPL +A
Sbjct: 86 KLL-SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF---LLEHGANVNDRNLEGETPLIVA 141
Query: 329 AINNHFNIV 337
+ IV
Sbjct: 142 SKYGRSEIV 150
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 280 FLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIV-L 338
+ D NR L +A G N I KL E D + D+EG+T L A NN I
Sbjct: 30 YRDSYNRTPLMVACMLGMENA---IDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEK 86
Query: 339 ILARNMRVNIRATNEKKQTALAIV 362
+L++ VN + + K +I+
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSII 110
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 221 LHYAAALGH-FEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIE 279
+H AA G +A R+ E + + D G +PL A+ +G++++++ LL + D +
Sbjct: 23 VHQLAAQGEMLYLATRI--EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-Q 79
Query: 280 FLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLI 339
L K + L LA G+ ++V L + +N D G TPL A NH V +
Sbjct: 80 LLGKGRESALSLACSKGYTDIV---KMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 136
Query: 340 L 340
L
Sbjct: 137 L 137
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 276 DSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFN 335
+++ F + ++ LAAQ +++++ E E++IN +D EG TPL AA +
Sbjct: 11 ENLYFQGANSLSVHQLAAQG----EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIA 66
Query: 336 IVLILARN 343
+V L +N
Sbjct: 67 VVEFLLQN 74
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 11/129 (8%)
Query: 105 DDILRKQDEEGNTPLHNAVRKCDGKMAFTMI----RKDPELICYINKAGQSPLSLAIDAG 160
++++ DEEG TPL A G++A DP+L + K +S LSLA G
Sbjct: 42 ENVINHTDEEGFTPLMWAA--AHGQIAVVEFLLQNGADPQL---LGKGRESALSLACSKG 96
Query: 161 LTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP 220
T I ++ + V ++ LL+ + N V K+L + N
Sbjct: 97 YTDIVKMLLDCGVDVNEYDWNGGTPLLY--AVHGNHVKCVKMLLESGADPTIETDSGYNS 154
Query: 221 LHYAAALGH 229
+ A ALG+
Sbjct: 155 MDLAVALGY 163
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 221 LHYAAALGH-FEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIE 279
+H AA G +A R+ E + + D G +PL A+ +G++++++ LL + D +
Sbjct: 5 VHQLAAQGEMLYLATRI--EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-Q 61
Query: 280 FLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLI 339
L K + L LA G+ ++V L + +N D G TPL A NH V +
Sbjct: 62 LLGKGRESALSLACSKGYTDIV---KMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 118
Query: 340 L 340
L
Sbjct: 119 L 119
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 290 HLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN 343
LAAQ +++++ E E++IN +D EG TPL AA + +V L +N
Sbjct: 7 QLAAQG----EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 56
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 11/129 (8%)
Query: 105 DDILRKQDEEGNTPLHNAVRKCDGKMAFTMI----RKDPELICYINKAGQSPLSLAIDAG 160
++++ DEEG TPL A G++A DP+L + K +S LSLA G
Sbjct: 24 ENVINHTDEEGFTPLMWAAAH--GQIAVVEFLLQNGADPQL---LGKGRESALSLACSKG 78
Query: 161 LTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP 220
T I ++ + V ++ LL+ + N V K+L + N
Sbjct: 79 YTDIVKMLLDCGVDVNEYDWNGGTPLLY--AVHGNHVKCVKMLLESGADPTIETDSGYNS 136
Query: 221 LHYAAALGH 229
+ A ALG+
Sbjct: 137 MDLAVALGY 145
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 252 QSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAA-QNGHANVVVFISKLPEI 310
+SPL LA++ + L +LL + LH+AA + +V + PE+
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 311 EDMINSSDL-EGNTPLHLAAINNHFNIV-LILARNMRVNIRAT 351
+S+L EG T LH+A IN + N+V +LAR V+ RAT
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARAT 106
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 75/200 (37%), Gaps = 53/200 (26%)
Query: 8 LFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLV-- 65
L A + D + + + G + +TALHIAA + + M ++E P+LV
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 66 --SVENHKSETPMHVAARAGNFGVAKIFM-----------------RPHG---NGNNTGT 103
+ E ++ +T +H+A N + + + RPH G + +
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126
Query: 104 F------DDI----------LRKQDEEGNTPLHNAVRKCDGKMAFTMIR----------- 136
F ++I +R QD GNT LH + + + A M
Sbjct: 127 FAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHL 186
Query: 137 KDPELICYINKAGQSPLSLA 156
K EL+ N G +P LA
Sbjct: 187 KSLELVP--NNQGLTPFKLA 204
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 262 GKLSLLKRLL--HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDL 319
G + +RLL + PD D+ ++H AA+ G + + L E + +N D
Sbjct: 48 GNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGFLDT---LQTLLENQADVNIEDN 101
Query: 320 EGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTA 358
EGN PLHLAA H +V L ++ N+ N K TA
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N DK PLH AA H EI L + D A D G++PLHL +
Sbjct: 31 RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI--DAIGETPLHLVA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
G L +++ LL D + DK + ++ NG+ ++ + KL
Sbjct: 89 MYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + DK LHLAA N H +V + K +N+ D G TPLHL
Sbjct: 31 RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD---VNAIDAIGETPLHLV 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
A+ H IV +L ++ ++ A ++ +TA I
Sbjct: 88 AMYGHLEIVEVLLKH-GADVNAQDKFGKTAFDI 119
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 314 INSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIV 362
+N+ D G TPLHLAA+N+H IV +L +N ++ A + +T L +V
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKN-GADVNAIDAIGETPLHLV 87
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL 243
LT LH+A + + ++ +L+ D +N +D PLH A GH EI L L
Sbjct: 48 LTPLHLAAMNDHLEIVEVLLKNGAD-VNAIDAIGETPLHLVAMYGHLEIVEVL------L 100
Query: 244 AYERDCNGQ 252
+ D N Q
Sbjct: 101 KHGADVNAQ 109
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + + T LH+AA H +V +L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
D+ +++ ETP+H+ A G+ + ++ ++ HG
Sbjct: 71 ADVNAID-AIGETPLHLVAMYGHLEIVEVLLK-HG 103
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 39 DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMR 93
+TALH+AAR+ + +LE D +++++ TP+H A A GV +I +R
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 69/171 (40%), Gaps = 22/171 (12%)
Query: 73 ETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAF 132
ET +H+AAR AK + + N QD G TPLH AV D + F
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADAN----------IQDNMGRTPLHAAV-SADAQGVF 106
Query: 133 T-MIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSV--LDHRGPNDLTLLHI 189
+IR + G +PL LA + + +I V +D G + LH
Sbjct: 107 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK---SALHW 163
Query: 190 AIIKSNFVVMAKILE--AKRDLINVLDKRDRNPLHYAAALGHFEIACRLSD 238
A +N +L+ A +D+ N R+ PL AA G +E A L D
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQN---NREETPLFLAAREGSYETAKVLLD 211
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 67 VENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEE 114
++N++ ETP+ +AAR G++ AK+ + N + T D + R +E
Sbjct: 185 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 242 TLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVV 301
+L + D G++ LHLA+ + KRLL + D+ D R LH AA + A V
Sbjct: 48 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLH-AAVSADAQGV 105
Query: 302 VFISKLPEIEDMINSSDLEGNTPLHLAA 329
I D+ ++ +G TPL LAA
Sbjct: 106 FQILIRNRATDL-DARMHDGTTPLILAA 132
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 282 DKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILA 341
D+ LHLAA+ ++ +L E N D G TPLH A + + IL
Sbjct: 54 DRTGETALHLAARYSRSDAA---KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 342 RNMRVNIRATNEKKQTAL 359
RN ++ A T L
Sbjct: 111 RNRATDLDARMHDGTTPL 128
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 37/221 (16%)
Query: 73 ETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAF 132
+TP+H+A GN + G + LR+ TPLH AV
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ------TPLHLAV--------- 54
Query: 133 TMIRKDPELICYINKAGQSPLSLAIDAGLT-HIAC------CIIKEKLSV------LDHR 179
I P ++ + AG SP++L H+AC C+ S L+ R
Sbjct: 55 --ITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112
Query: 180 GPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAA---ALGHFEIACRL 236
+ LT LH+A+ + +LE D+ V K R+PL +A +L ++ +
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172
Query: 237 SDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDS 277
+ Y +G S LH AS G L L++ L+ S DS
Sbjct: 173 GANVNAQMY----SGSSALHSASGRGLLPLVRTLVRSGADS 209
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 185 TLLHIAIIKSNFVVMAKIL----EAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDED 240
T LHIA+++ N + +++ + R+L ++ + + PLH A + RL
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAV-ITTLPSVVRLLVTA 68
Query: 241 DTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRN---ILHLAAQNGH 297
D +GQ+ HLA E+ + L+ LL S L+ +N + LH+A
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 298 ANVVVFISKLPEIEDMINSSDLE-GNTPLHLAAINNHFNIVLIL 340
V L E I++ D++ G +PL A NN ++V +L
Sbjct: 129 QETVQL---LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 20/96 (20%)
Query: 243 LAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKN---RNILHLAAQNGHAN 299
+A D +G +PLH+A G L + RL++ + LD N + LHLA
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA------- 53
Query: 300 VVVFISKLPEIEDMINSS-------DLEGNTPLHLA 328
I+ LP + ++ ++ D G T HLA
Sbjct: 54 ---VITTLPSVVRLLVTAGASPMALDRHGQTAAHLA 86
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 253 SPLHLA-----SENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
+PL LA S G+ L++R+++ D + + LH A GH +V F L
Sbjct: 34 NPLPLALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNAVCAGHTEIVKF---L 89
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTA 358
+ +N++D +G TPLH AA N+ + L + T QTA
Sbjct: 90 VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
TALH A GH +V +++ + V+ + TP+H AA N V K F+ G
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCK-FLVESGAAV 129
Query: 100 NTGTFDDILRKQD-----EEGNTPLHNAVRKCDGKMA 131
T+ D+ D EEG T + KM
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 99/257 (38%), Gaps = 40/257 (15%)
Query: 110 KQDEEGNTPLHNAVRKCDGKMAFTMIR--KDPELICYINKAGQSPLSLAIDAGLTHIACC 167
+++E G TPLHNAV+ + ++R DP L K G +P LA AG +
Sbjct: 34 QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR---KKNGATPFLLAAIAGSVKL--- 87
Query: 168 IIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEA----KRDLINVLDKRDRNPLHY 223
L + +G + + + +F +EA K + L KR N
Sbjct: 88 -----LKLFLSKGAD--------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN---- 130
Query: 224 AAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDK 283
+ R ++D + G + L A+E G + +LK LL + D
Sbjct: 131 --------VNLRRKTKEDQERLRK--GGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 284 KNRN-ILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILAR 342
RN ++H + ++V L + +N G TPL LA H +V L
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240
Query: 343 NMRVNIRATNEKKQTAL 359
+ I T+ +TAL
Sbjct: 241 QEHIEINDTDSDGKTAL 257
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 104/268 (38%), Gaps = 27/268 (10%)
Query: 7 VLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVS 66
+L +A++ D V++ N + T LH A + +++V +L D V
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV- 66
Query: 67 VENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKC 126
+ TP +AA AG+ + K+F+ + N + G T A
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY----------GFTAFMEAA--V 114
Query: 127 DGKMA-----------FTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKE---K 172
GK+ + RK E + K G + L A + G + ++ E
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174
Query: 173 LSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEI 232
++ D+ G N L ++ S+ + +L +NV +R + PL A H +
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234
Query: 233 ACRLSDEDDTLAYERDCNGQSPLHLASE 260
RL +++ + D +G++ L LA E
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVE 262
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 99/257 (38%), Gaps = 40/257 (15%)
Query: 110 KQDEEGNTPLHNAVRKCDGKMAFTMIR--KDPELICYINKAGQSPLSLAIDAGLTHIACC 167
+++E G TPLHNAV+ + ++R DP L K G +P LA AG +
Sbjct: 54 QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR---KKNGATPFILAAIAGSVKL--- 107
Query: 168 IIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEA----KRDLINVLDKRDRNPLHY 223
L + +G + + + +F +EA K + L KR N
Sbjct: 108 -----LKLFLSKGAD--------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN---- 150
Query: 224 AAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDK 283
+ R ++D + G + L A+E G + +LK LL + D
Sbjct: 151 --------VNLRRKTKEDQERLRK--GGATALMDAAEKGHVEVLKILLDEMGADVNACDN 200
Query: 284 KNRN-ILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILAR 342
RN ++H + ++V L + +N G TPL LA H +V L
Sbjct: 201 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260
Query: 343 NMRVNIRATNEKKQTAL 359
+ I T+ +TAL
Sbjct: 261 QEHIEINDTDSDGKTAL 277
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 104/268 (38%), Gaps = 27/268 (10%)
Query: 7 VLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVS 66
+L +A++ D V++ N + T LH A + +++V +L D V
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV- 86
Query: 67 VENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKC 126
+ TP +AA AG+ + K+F+ + N + G T A
Sbjct: 87 LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFY----------GFTAFMEAA--V 134
Query: 127 DGKMA-----------FTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKE---K 172
GK+ + RK E + K G + L A + G + ++ E
Sbjct: 135 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 194
Query: 173 LSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEI 232
++ D+ G N L ++ S+ + +L +NV +R + PL A H +
Sbjct: 195 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 254
Query: 233 ACRLSDEDDTLAYERDCNGQSPLHLASE 260
RL +++ + D +G++ L LA E
Sbjct: 255 VQRLLEQEHIEINDTDSDGKTALLLAVE 282
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 253 SPLHL---ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPE 309
+PL L +S G+ L++R+++ D + + LH A GH +V F L +
Sbjct: 36 NPLALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNAVCAGHTEIVKF---LVQ 91
Query: 310 IEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTA 358
+N++D +G TPLH AA N+ + L + T QTA
Sbjct: 92 FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGN 99
TALH A GH +V +++ + V+ + TP+H AA N V K F+ G
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCK-FLVESGAAV 129
Query: 100 NTGTFDDILRKQD-----EEGNTPLHNAVRKCDGKMA 131
T+ D+ D EEG T + KM
Sbjct: 130 FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 201 KILEAKRDLINVLDKRDRNPLHYAAALGHFEIA-CRLSDEDDTLAYERDCNGQSPLHLAS 259
+IL A +N D+ PL+ A A GH EI L + D A D G +PLHLA+
Sbjct: 31 RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV--DAIGFTPLHLAA 88
Query: 260 ENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
G L + + LL D + DK + ++ NG+ ++ + KL
Sbjct: 89 FIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + D+ L+LA +GH +V + L D +N+ D G TPLHLA
Sbjct: 31 RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVL--LKNGAD-VNAVDAIGFTPLHLA 87
Query: 329 AINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
A H I +L ++ ++ A ++ +TA I
Sbjct: 88 AFIGHLEIAEVLLKH-GADVNAQDKFGKTAFDI 119
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL 243
LT L++A + ++ +L+ D +N +D PLH AA +GH EIA L L
Sbjct: 48 LTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVL------L 100
Query: 244 AYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKN 285
+ D N Q GK + + + D E L K N
Sbjct: 101 KHGADVNAQDKF------GKTAFDISIGNGNEDLAEILQKLN 136
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + + T L++A GH +V +L+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96
D+ +V+ TP+H+AA G+ +A++ ++ HG
Sbjct: 71 ADVNAVDA-IGFTPLHLAAFIGHLEIAEVLLK-HG 103
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 16/154 (10%)
Query: 15 GDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSET 74
G+A+TV E G G+L + TALH+A R +L+ RP + T
Sbjct: 56 GEASTV-EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114
Query: 75 PMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDI---LRKQDEEGNTPLHNAVRKCDGKMA 131
+ A + +P+ +D L ++ +G+TPLH AV D +M
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM- 173
Query: 132 FTMIRK------DPELICYINKAGQSPLSLAIDA 159
++R PE C G++PL LA++A
Sbjct: 174 VRLLRDAGADLNKPEPTC-----GRTPLHLAVEA 202
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 21/172 (12%)
Query: 185 TLLHIAIIKSNFVVMAKIL--EAKRDLINVLDKRDRNPLHYAAALGHFEIACRL-SDEDD 241
T LH+A+I + + +L A + +++ + + LH AA LG +L +
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 242 TLAYERDCNGQSPLHLASENGKLSLLKRLLHSYP----DSIEFLDKKNRNILHLAAQNGH 297
L ER G + LHLA + LL P D+ + ++++ H
Sbjct: 71 VLVAER--GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC---TPDTSH 125
Query: 298 ANVVVFISKLPEIED---------MINSSDLEGNTPLHLAAINNHFNIVLIL 340
A V PE E+ + + + +G+TPLH+A I+ +V +L
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 16/154 (10%)
Query: 15 GDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSET 74
G+A+TV E G G+L + TALH+A R +L+ RP + T
Sbjct: 56 GEASTV-EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114
Query: 75 PMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDI---LRKQDEEGNTPLHNAVRKCDGKMA 131
+ A + +P+ +D L ++ +G+TPLH AV D +M
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM- 173
Query: 132 FTMIRK------DPELICYINKAGQSPLSLAIDA 159
++R PE C G++PL LA++A
Sbjct: 174 VRLLRDAGADLNKPEPTC-----GRTPLHLAVEA 202
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 21/172 (12%)
Query: 185 TLLHIAIIKSNFVVMAKIL--EAKRDLINVLDKRDRNPLHYAAALGHFEIACRL-SDEDD 241
T LH+A+I + + +L A + +++ + + LH AA LG +L +
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 242 TLAYERDCNGQSPLHLASENGKLSLLKRLLHSYP----DSIEFLDKKNRNILHLAAQNGH 297
L ER G + LHLA + LL P D+ + ++++ H
Sbjct: 71 VLVAER--GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC---TPDTSH 125
Query: 298 ANVVVFISKLPEIED---------MINSSDLEGNTPLHLAAINNHFNIVLIL 340
A V PE E+ + + + +G+TPLH+A I+ +V +L
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 97/256 (37%), Gaps = 72/256 (28%)
Query: 38 RDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGN 97
+ T LH+AA + +V +L+ D V ++ P+H A G++ V ++ ++ HG
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLK-HGA 115
Query: 98 GNNTGTFDDILRKQDEEGNTPLHNAVRK--------------------CDGKMAFTMIRK 137
N D TPLH A K C GK A M
Sbjct: 116 CVNA---------MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA-P 165
Query: 138 DPEL---ICYINKAGQSPLSLAIDAGL---------------------THIACCII---- 169
PEL + Y K G S L A +A L T + C +
Sbjct: 166 TPELRERLTYEFK-GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHP 224
Query: 170 --KEKLSVLDHRGPND-------LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP 220
K+ +L +G N +T LH+A +++ VM ++L +N LD +
Sbjct: 225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTA 283
Query: 221 LHYAAALGHFEIACRL 236
LH AA GH + CRL
Sbjct: 284 LHRAALAGHLQT-CRL 298
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKL 307
D +PLHLA+ ++ +++ LL D + DK LH A GH V + K
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKH 113
Query: 308 PEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340
+N+ DL TPLH AA N + +L
Sbjct: 114 GAC---VNAMDLWQFTPLHEAASKNRVEVCSLL 143
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 8 LFRALRRGDAATVRESARLNGNGILDMSQ--NRDTALHIAARFGH--KNVVMEILELRPD 63
L +A R D A V+++ L I++ Q + +TALH A H + V E+L +
Sbjct: 182 LLQAAREADLAKVKKTLALE---IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA 238
Query: 64 LVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAV 123
V+ +N TP+HVAA + V ++ H +G D + G T LH A
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVL---HKHGAKMNALDSL-------GQTALHRAA 288
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 36 QNRD--TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFM 92
+N+D T LH+AA H N VME+L ++ + +T +H AA AG+ ++ +
Sbjct: 243 KNKDFMTPLHVAAERAH-NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFIS 305
+D NG +PLHLA+ NG L ++K LL + D + DK + ++ NG+ ++ +
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + +N T LH+AAR GH VV +LE
Sbjct: 4 SDLGKKLLEAARAGQDDEVR-ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 62
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIF 91
D V+ ++ +T ++ GN +A+I
Sbjct: 63 AD-VNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 314 INSSDLEGNTPLHLAAINNHFNIVLIL 340
+ + D G+TPLHLAA N H +V +L
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLL 58
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + DK LHLAA+NGH VV L E +N+ D G T ++
Sbjct: 23 RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL---LLEAGADVNAQDKFGKTAFDIS 79
Query: 329 AINNHFNIVLIL 340
N + ++ IL
Sbjct: 80 IDNGNEDLAEIL 91
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 45 AARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTF 104
AAR G + V ++ D V+ ++ TP+H+AAR G+ V K+ + + N F
Sbjct: 13 AARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKF 71
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFIS 305
+D NG +PLHLA+ NG L ++K LL + D + DK + ++ NG+ ++ +
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELR 61
S + + L A R G VR NG + +N T LH+AAR GH VV +LE
Sbjct: 22 SDLGKKLLEAARAGQDDEVR-ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIF 91
D V ++ +T ++ GN +A+I
Sbjct: 81 AD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 314 INSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+ + D G+TPLHLAA N H +V +L ++ A ++ +TA I
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFDI 96
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 45 AARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMR 93
AAR G + V ++ D V+ ++ TP+H+AAR G+ V K+ +
Sbjct: 31 AARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 269 RLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLA 328
R+L + + DK LHLAA+NGH VV L E + + D G T ++
Sbjct: 41 RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL---LLEAGADVXAQDKFGKTAFDIS 97
Query: 329 AINNHFNIVLIL 340
N + ++ IL
Sbjct: 98 IDNGNEDLAEIL 109
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASE--NGKLSLL 267
+N D R PLH+A LGH +AC L RD G+ PL +A E N + L
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAMETANADIVTL 319
Query: 268 KRL 270
RL
Sbjct: 320 LRL 322
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASE--NGKLSLL 267
+N D R PLH+A LGH +AC L RD G+ PL +A E N + L
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAMETANADIVTL 319
Query: 268 KRL 270
RL
Sbjct: 320 LRL 322
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASE--NGKLSLL 267
+N D R PLH+A LGH +AC L RD G+ PL +A E N + L
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAMETANADIVTL 319
Query: 268 KRL 270
RL
Sbjct: 320 LRL 322
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 27/176 (15%)
Query: 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDR---NPLHYAAALGHFEIACRLSDEDD 241
T LH ++ +NF V+ ++L++ + +DK++R +P+ A L +DD
Sbjct: 113 TALHYSVSHANFPVVQQLLDSG---VCKVDKQNRAGYSPIMLTA-------LATLKTQDD 162
Query: 242 ---TLAYERDCN--------GQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILH 290
L R N GQ+ L LA +G++ ++K LL D + D L
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALM 221
Query: 291 LAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRV 346
A ++GH + + +P + I+ +D +G+T L +A I +L M +
Sbjct: 222 CACEHGHKEIAGLLLAVPSCD--ISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 19/163 (11%)
Query: 209 LINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK 268
++N+ D LHY+ + +F + +L D +++ G SP+ L + L+ LK
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA----LATLK 158
Query: 269 RLLHSYPDSIEFLDKKNR--NILHLAAQNGHANVVVFIS--------KLPEIEDMINSSD 318
D IE + + R NI A+Q G +++ +S L E +N D
Sbjct: 159 T-----QDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQD 213
Query: 319 LEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+G+T L A + H I +L +I T+ TAL +
Sbjct: 214 DDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMV 256
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 40 TALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMR 93
TALH+AA + + +LE D +++++ TP+H A A GV +I +R
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 67 VENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEE 114
++N++ ETP+ +AAR G++ AK+ + N + T D + R +E
Sbjct: 185 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 100/241 (41%), Gaps = 30/241 (12%)
Query: 1 ESTVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILEL 60
E + A+V+ L +G A LN M + +T+LH+AARF + +L+
Sbjct: 26 EDSTAQVISDLLAQG--------AELNAT----MDKTGETSLHLAARFARADAAKRLLDA 73
Query: 61 RPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLH 120
D S +N TP+H A A GV +I +R N D G TPL
Sbjct: 74 GADANSQDN-TGRTPLHAAVAADAMGVFQILLRNRATNLNARMHD---------GTTPLI 123
Query: 121 NAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRG 180
A R M +I D + I + +G++ L A T A I+ + D +
Sbjct: 124 LAARLAIEGMVEDLITADAD-INAADNSGKTALHWAAAVNNTE-AVNILLMHHANRDAQD 181
Query: 181 PNDLTLLHIAIIKSNFVVMAKILE--AKRDLINVLDKRDRNPLHYAAALGHFEIACRLSD 238
D T L +A + ++ +L+ A R+ + D DR P A+ H +I RL D
Sbjct: 182 DKDETPLFLAAREGSYEASKALLDNFANRE---ITDHMDRLPRDVASERLHHDI-VRLLD 237
Query: 239 E 239
E
Sbjct: 238 E 238
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 5/166 (3%)
Query: 194 SNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQS 253
S V++ +L +L +DK LH AA + A RL D A +D G++
Sbjct: 28 STAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAG-ADANSQDNTGRT 86
Query: 254 PLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDM 313
PLH A + + + LL + ++ L LAA+ + + L +
Sbjct: 87 PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA---IEGMVEDLITADAD 143
Query: 314 INSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359
IN++D G T LH AA N+ V IL + N A ++K +T L
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILLMH-HANRDAQDDKDETPL 188
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 234 CRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIE-FLDKKNRNILHLA 292
C L D+ + + N Q+ LA+ENG L +L RL P I + +N + LA
Sbjct: 112 CLLLTSDEIVKVIQAENYQA-FRLAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLA 170
Query: 293 AQNGHANVVVFISKLPEIE 311
A+NGH +V+ + +L E
Sbjct: 171 AENGHLHVLNRLCELAPTE 189
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 314 INSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAI 361
+N+ D +G TPLHLAA H IV +L + ++ A ++ +TA I
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDI 74
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISK 306
+D +G +PLHLA+ G L +++ LL + D + DK + ++ NG+ ++ + K
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRD--TALHIAARFGHKNVVMEILELR 61
+ + L A R G VR L NG ++++D T LH+AAR GH +V +L+
Sbjct: 2 LGKKLLEAARAGQDDEVR---ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 62 PDLVSVENHKSETPMHVAARAGNFGVAKIFMRP 94
D V+ ++ +T ++ GN +A+I +
Sbjct: 59 AD-VNAQDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 45 AARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTF 104
AAR G + V ++ D V+ ++ TP+H+AAR G+ + ++ ++ + N F
Sbjct: 9 AARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 67
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 24/198 (12%)
Query: 74 TPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFT 133
+P+H A G+ KI ++ HG N T D +TPL NA
Sbjct: 38 SPLHEACLGGHLSCVKILLK-HGAQVNGVTAD---------WHTPLFNACVSGSWDCVNL 87
Query: 134 MIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSV---LDHRGPNDLTLLHIA 190
+++ + + A SP+ A G H+ C + ++ +DH+ + T L++A
Sbjct: 88 LLQHGASVQPESDLA--SPIHEAARRG--HVEC--VNSLIAYGGNIDHKISHLGTPLYLA 141
Query: 191 IIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSD-EDDTLAYERDC 249
+ K+LE+ D +N +D +PLH A E+AC L D DT A ++
Sbjct: 142 CENQQRACVKKLLESGAD-VNQGKGQD-SPLHAVARTASEELACLLMDFGADTQA--KNA 197
Query: 250 NGQSPLHLASENGKLSLL 267
G+ P+ L L+ L
Sbjct: 198 EGKRPVELVPPESPLAQL 215
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 219 NPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPD 276
+P+H AA GH E L + ++ G +PL+LA EN + + +K+LL S D
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGAD 159
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 66 SVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILR 109
++N+K ETP+ +AAR G++ AK+ + N + T D + R
Sbjct: 75 DMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 118
>pdb|1VF5|C Chain C, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|1VF5|P Chain P, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|2D2C|C Chain C, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
pdb|2D2C|P Chain P, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
pdb|2E74|C Chain C, Crystal Structure Of The Cytochrome B6f Complex From
M.Laminosus
pdb|2E75|C Chain C, Crystal Structure Of The Cytochrome B6f Complex With
2-nonyl-4- Hydroxyquinoline N-oxide (nqno) From
M.laminosus
pdb|2E76|C Chain C, Crystal Structure Of The Cytochrome B6f Complex With
Tridecyl- Stigmatellin (Tds) From M.Laminosus
pdb|4H0L|C Chain C, Cytochrome B6f Complex Crystal Structure From
Mastigocladus Laminosus With N-side Inhibitor Nqno
pdb|4H13|C Chain C, Crystal Structure Of The Cytochrome B6f Complex From
Mastigocladus Laminosus With Tds
Length = 289
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 36 QNRDTALHIAARFGHKNVVMEILELRPDLVSVEN-HKSETPMHVAARAGNFGVAKIFMRP 94
+ +D L + G + + L P+ + +N H + +H+ A N G +I+
Sbjct: 108 EGQDNVLLVGPLPGEQYQEIVFPVLSPNPTTDKNIHFGKYAIHLGA---NRGRGQIYPTG 164
Query: 95 HGNGNN------TGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELI 142
+ NN TGT I +++DE GN +++ GK I PELI
Sbjct: 165 EKSNNNVFTASATGTITKIAKEEDEYGNVKYQVSIQTDSGKTVVDTIPAGPELI 218
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 288 ILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVN 347
+LHLA + + + + + + +++ +GNT LH AA+ N + + +L + R
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-RAL 251
Query: 348 IRATNEKKQTALAIVQPSLHQ 368
+ NE +TAL I + H+
Sbjct: 252 VGTVNEAGETALDIARKKHHK 272
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 288 ILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVN 347
+LHLA + + + + + + +++ +GNT LH AA+ N + + +L + R
Sbjct: 174 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-RAL 232
Query: 348 IRATNEKKQTALAIVQPSLHQ 368
+ NE +TAL I + H+
Sbjct: 233 VGTVNEAGETALDIARKKHHK 253
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 161 LTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKR------DLINVLD 214
L H C ++ + L LD RG L++L + ++ KIL + R DL +L
Sbjct: 588 LCHSFCSLVSQNLGPLDERGAAQLSIL-VKGFSRQSSLLFKILSSVRNHQINSDLAQLLL 646
Query: 215 KRDRNPLHYAAA--LGHFEIACRL 236
+ D N + A LG F + RL
Sbjct: 647 RLDYNKYYTQAGGTLGSFGMCGRL 670
>pdb|3BZR|A Chain A, Crystal Structure Of Escu C-Terminal Domain With N262d
Mutation, Space Group P 41 21 2
pdb|3BZS|A Chain A, Crystal Structure Of Escu C-Terminal Domain With N262d
Mutation, Space Group P 21 21 21
Length = 137
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 105 DDILRK-QDEEGNTPLHNAVRKC-----DGKMA-----FTMIRKDPE--LICYINKAGQS 151
D++ R+ +D +GN + R+ G +A T+I KDP IC K G++
Sbjct: 10 DEVKREAKDTDGNPEIKGERRRLHSEIQSGSLANNIKKSTVIVKDPTHIAICLYYKLGET 69
Query: 152 PLSLAIDAGLTHIACCIIK 170
PL L I+ G A IIK
Sbjct: 70 PLPLVIETGKDAKALQIIK 88
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 279 EFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGN 322
++LD R +L + A ++++F++ EIED + LEG+
Sbjct: 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGD 328
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 279 EFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGN 322
++LD R +L + A ++++F++ EIED + LEG+
Sbjct: 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGD 328
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 253 SPLHLASENGKLSLLKRLLHSYPDSIEFLDK--------KNRNILHLAAQNGHANVVVFI 304
+ LH E K + LL +Y D ++ +K + LHLA ++ + +
Sbjct: 129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 188
Query: 305 SKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQP 364
L + ++ +G+T LH + ++ + +L R + +I NE +T L I +
Sbjct: 189 DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG-KASIEIANESGETPLDIAKR 247
Query: 365 SLHQN 369
H++
Sbjct: 248 LKHEH 252
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 112 DEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIK 170
D EGNTPL+ AV D ++A +I + + I N SP A G T I ++K
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGAQGRTEILAYMLK 93
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 236 LSDEDDTLAYERDCN-----GQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILH 290
L + D +A D N G+ PLH A++ G+L +L+ LL D I DK + L
Sbjct: 20 LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLL 78
Query: 291 LAAQNGHANVV 301
A GH + V
Sbjct: 79 SAVYEGHVSCV 89
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 18/128 (14%)
Query: 11 ALRRGDAATVRESARLNGNGILDMSQNR--DTALHIAARFGHKNVVMEILELRPDLVSV- 67
A R+G VR RL G+ QNR TALH+A +FG ++ L SV
Sbjct: 27 AARKGQTDEVR---RLIETGVSPTIQNRFGCTALHLACKFG-------CVDTAKYLASVG 76
Query: 68 ENHK---SETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVR 124
E H + P+H+A A + + G + +L + DE + + V+
Sbjct: 77 EVHSLWHGQKPIHLAVXANKTDLVVALV--EGAKERGQXPESLLNECDEREVNEIGSHVK 134
Query: 125 KCDGKMAF 132
C G+ A
Sbjct: 135 HCKGQTAL 142
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 28.9 bits (63), Expect = 5.9, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 236 LSDEDDTLAYERDCN-----GQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILH 290
L + D +A D N G+ PLH A++ G+L +L+ LL D I DK + L
Sbjct: 15 LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLL 73
Query: 291 LAAQNGHANVV 301
A GH + V
Sbjct: 74 SAVYEGHVSCV 84
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 219 NPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPD 276
+P+H AA GH E L + ++ G +PL+LA EN + + +K+LL S D
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGAD 215
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 108 LRKQDEEGNTPLHNAVRKCDG---------KMAFTMIRK------DPELICYINKAGQSP 152
LR+QD GNT LH V D KM ++ K D L +N G SP
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP 228
Query: 153 LSLAIDAGLTHIACCIIKEKLS 174
L +A G I II+ +++
Sbjct: 229 LMMAAKTGKIGIFQHIIRREIA 250
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 108 LRKQDEEGNTPLHNAVRKCDG---------KMAFTMIRK------DPELICYINKAGQSP 152
+R+QD GNT LH V D KM ++ K D L +N G SP
Sbjct: 167 MRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSP 226
Query: 153 LSLAIDAGLTHIACCIIKEKLS 174
L +A G I II+ +++
Sbjct: 227 LMMAAKTGKIGIFQHIIRREVT 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,457,154
Number of Sequences: 62578
Number of extensions: 501033
Number of successful extensions: 2210
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1141
Number of HSP's gapped (non-prelim): 520
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)