Query 038664
Match_columns 464
No_of_seqs 523 out of 3517
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 23:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 1.2E-58 4.1E-63 446.4 37.6 357 4-381 14-372 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 6E-58 2.1E-62 441.5 37.6 346 4-370 47-392 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 6E-47 2E-51 351.9 29.0 295 35-351 22-330 (337)
4 3utm_A Tankyrase-1; tankyrase, 100.0 1.8E-46 6.2E-51 351.0 26.3 298 35-363 21-321 (351)
5 3utm_A Tankyrase-1; tankyrase, 100.0 9.2E-46 3.2E-50 346.2 22.4 324 4-366 24-350 (351)
6 4g8k_A 2-5A-dependent ribonucl 100.0 1.5E-43 5E-48 329.0 31.6 288 5-316 26-329 (337)
7 1wdy_A 2-5A-dependent ribonucl 100.0 4.1E-44 1.4E-48 324.9 25.2 264 72-353 5-284 (285)
8 1wdy_A 2-5A-dependent ribonucl 100.0 1.4E-43 4.8E-48 321.4 26.7 265 37-318 4-283 (285)
9 2fo1_E LIN-12 protein; beta-ba 100.0 2.7E-44 9.3E-49 337.8 16.8 314 4-347 37-371 (373)
10 2xai_A ASB-9, ankyrin repeat a 100.0 4.4E-41 1.5E-45 300.3 25.6 257 37-341 2-258 (261)
11 3d9h_A CDNA FLJ77766, highly s 100.0 1E-41 3.6E-46 308.1 21.4 258 111-378 11-279 (285)
12 2fo1_E LIN-12 protein; beta-ba 100.0 9E-43 3.1E-47 327.5 13.6 308 39-377 38-370 (373)
13 3d9h_A CDNA FLJ77766, highly s 100.0 1.4E-40 4.7E-45 300.8 26.7 252 4-274 15-276 (285)
14 2xai_A ASB-9, ankyrin repeat a 100.0 6.4E-41 2.2E-45 299.3 22.2 241 71-366 2-249 (261)
15 3ljn_A Hypothetical protein; a 100.0 2E-41 6.9E-46 318.1 19.2 287 30-351 12-318 (364)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 4E-41 1.4E-45 299.2 18.9 230 30-272 2-244 (253)
17 3ljn_A Hypothetical protein; a 100.0 9.6E-42 3.3E-46 320.3 14.8 274 65-370 13-304 (364)
18 1yyh_A HN1;, notch 1, ankyrin 100.0 1.6E-40 5.4E-45 295.4 18.7 230 108-343 3-245 (253)
19 1oy3_D Transcription factor in 100.0 2.6E-40 8.7E-45 299.4 17.7 264 32-367 3-270 (282)
20 3b7b_A Euchromatic histone-lys 100.0 9.2E-39 3.2E-43 281.4 26.2 229 30-272 3-231 (237)
21 1k1a_A B-cell lymphoma 3-encod 100.0 3.7E-39 1.3E-43 284.7 23.4 229 32-274 3-239 (241)
22 1oy3_D Transcription factor in 100.0 1.4E-39 4.9E-44 294.5 17.9 247 109-382 3-254 (282)
23 3aji_A 26S proteasome non-ATPa 100.0 1.8E-38 6.1E-43 278.4 23.1 226 36-275 4-229 (231)
24 3b7b_A Euchromatic histone-lys 100.0 3.6E-38 1.2E-42 277.6 22.7 219 145-370 7-225 (237)
25 3aji_A 26S proteasome non-ATPa 100.0 2E-38 6.8E-43 278.1 20.7 223 113-342 4-226 (231)
26 1k1a_A B-cell lymphoma 3-encod 100.0 7.1E-39 2.4E-43 282.9 18.0 221 109-370 3-231 (241)
27 2dzn_A Probable 26S proteasome 100.0 7E-38 2.4E-42 274.1 22.5 217 149-370 2-223 (228)
28 2dzn_A Probable 26S proteasome 100.0 1.6E-37 5.6E-42 271.7 24.4 214 38-262 2-219 (228)
29 3kea_A K1L; tropism, ANK repea 100.0 1.2E-37 4E-42 281.4 22.8 239 11-276 6-246 (285)
30 4b93_B Ankyrin repeat domain-c 100.0 2E-38 7E-43 283.0 16.0 225 34-272 7-240 (269)
31 4b93_B Ankyrin repeat domain-c 100.0 7.3E-39 2.5E-43 285.9 12.6 230 67-305 6-236 (269)
32 1s70_B 130 kDa myosin-binding 100.0 5.1E-38 1.7E-42 286.8 14.3 264 10-366 4-276 (299)
33 3eu9_A Huntingtin-interacting 100.0 1.6E-36 5.5E-41 267.6 23.0 230 32-275 3-234 (240)
34 1s70_B 130 kDa myosin-binding 100.0 1.5E-37 5.2E-42 283.7 16.3 220 149-382 40-261 (299)
35 3eu9_A Huntingtin-interacting 100.0 3.5E-36 1.2E-40 265.4 22.1 228 67-307 4-232 (240)
36 2f8y_A Notch homolog 1, transl 100.0 1.2E-36 4E-41 265.3 17.8 214 15-242 2-216 (223)
37 3kea_A K1L; tropism, ANK repea 100.0 1.5E-36 5E-41 274.2 17.6 237 108-365 24-262 (285)
38 2f8y_A Notch homolog 1, transl 100.0 1.7E-36 5.9E-41 264.2 16.8 215 126-347 2-216 (223)
39 1sw6_A Regulatory protein SWI6 100.0 5.4E-38 1.9E-42 289.3 7.3 253 83-365 30-326 (327)
40 1sw6_A Regulatory protein SWI6 100.0 8.5E-38 2.9E-42 288.0 4.7 272 37-332 22-327 (327)
41 1ikn_D Protein (I-kappa-B-alph 100.0 3.2E-35 1.1E-39 258.5 13.8 221 33-294 3-228 (236)
42 1ikn_D Protein (I-kappa-B-alph 100.0 8.8E-35 3E-39 255.6 13.2 227 67-332 3-230 (236)
43 3hra_A Ankyrin repeat family p 100.0 6.2E-33 2.1E-37 237.6 22.7 194 36-240 3-201 (201)
44 2rfa_A Transient receptor pote 100.0 2.2E-33 7.5E-38 246.1 20.2 211 37-276 2-222 (232)
45 2rfa_A Transient receptor pote 100.0 2E-33 6.9E-38 246.4 19.6 197 149-351 3-226 (232)
46 3hra_A Ankyrin repeat family p 100.0 1.1E-32 3.7E-37 236.1 20.5 193 147-343 3-200 (201)
47 4gpm_A Engineered protein OR26 100.0 3.9E-32 1.3E-36 223.8 18.7 160 3-175 3-162 (169)
48 2pnn_A Transient receptor pote 100.0 1E-32 3.4E-37 248.1 16.2 206 30-241 5-257 (273)
49 4gpm_A Engineered protein OR26 100.0 1.9E-32 6.5E-37 225.6 15.6 159 185-350 6-164 (169)
50 2etb_A Transient receptor pote 100.0 3.1E-32 1.1E-36 242.5 17.2 202 37-242 1-246 (256)
51 2pnn_A Transient receptor pote 100.0 9.3E-33 3.2E-37 248.3 13.6 221 109-359 7-271 (273)
52 2etb_A Transient receptor pote 100.0 1.3E-32 4.5E-37 244.9 13.8 205 115-349 2-248 (256)
53 2aja_A Ankyrin repeat family p 100.0 2.3E-33 7.8E-38 260.4 2.6 281 38-371 65-365 (376)
54 3jxi_A Vanilloid receptor-rela 100.0 3E-31 1E-35 236.7 13.8 204 35-242 2-250 (260)
55 3jxi_A Vanilloid receptor-rela 100.0 2E-31 6.9E-36 237.8 10.9 207 113-349 3-252 (260)
56 3v30_A DNA-binding protein rfx 100.0 1.3E-30 4.5E-35 217.1 13.7 170 183-358 2-171 (172)
57 4hbd_A KN motif and ankyrin re 100.0 8.9E-31 3E-35 235.0 11.3 194 149-346 76-275 (276)
58 2aja_A Ankyrin repeat family p 100.0 4E-32 1.4E-36 252.0 2.3 275 14-342 76-370 (376)
59 3v30_A DNA-binding protein rfx 100.0 5.7E-29 2E-33 207.1 18.0 158 39-208 3-160 (172)
60 1ihb_A P18-INK4C(INK6), cyclin 100.0 6.5E-29 2.2E-33 204.7 17.2 159 2-173 3-161 (162)
61 2rfm_A Putative ankyrin repeat 100.0 7.4E-29 2.5E-33 210.4 17.4 161 32-205 29-189 (192)
62 4hbd_A KN motif and ankyrin re 100.0 1.3E-29 4.5E-34 227.4 12.5 191 72-273 76-272 (276)
63 3v31_A Ankyrin repeat family A 100.0 2.9E-28 1E-32 201.8 18.6 159 37-208 2-160 (167)
64 2vge_A RELA-associated inhibit 100.0 6.7E-31 2.3E-35 228.6 1.7 200 132-340 2-207 (229)
65 3v31_A Ankyrin repeat family A 100.0 1.2E-28 4.2E-33 204.0 14.6 159 182-347 2-160 (167)
66 2rfm_A Putative ankyrin repeat 100.0 3.1E-28 1.1E-32 206.6 17.2 163 65-240 28-190 (192)
67 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.4E-28 8.1E-33 201.3 15.8 158 37-207 4-161 (162)
68 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.1E-27 3.6E-32 198.7 18.8 157 36-205 12-168 (169)
69 2y1l_E Darpin-8.4; hydrolase-i 100.0 8.9E-28 3E-32 199.1 17.6 156 4-172 14-169 (169)
70 3f6q_A Integrin-linked protein 100.0 9.8E-29 3.3E-33 207.1 11.3 161 216-381 4-166 (179)
71 3twr_A Tankyrase-2; ankyrin re 100.0 6.6E-28 2.2E-32 199.2 14.3 156 4-172 8-163 (165)
72 2vge_A RELA-associated inhibit 100.0 3.2E-30 1.1E-34 224.3 0.4 197 165-371 1-204 (229)
73 3f6q_A Integrin-linked protein 100.0 7.2E-28 2.5E-32 201.8 14.5 159 5-175 6-164 (179)
74 1awc_B Protein (GA binding pro 100.0 4.3E-27 1.5E-31 191.6 18.4 150 5-168 3-152 (153)
75 1bd8_A P19INK4D CDK4/6 inhibit 100.0 4E-27 1.4E-31 192.6 18.0 153 5-171 3-155 (156)
76 1bd8_A P19INK4D CDK4/6 inhibit 100.0 6.7E-28 2.3E-32 197.2 12.3 153 184-343 3-155 (156)
77 1awc_B Protein (GA binding pro 99.9 5.8E-27 2E-31 190.8 17.7 151 38-202 2-152 (153)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2E-28 6.8E-33 215.1 7.8 186 181-374 3-200 (239)
79 3twr_A Tankyrase-2; ankyrin re 99.9 5.4E-27 1.8E-31 193.7 15.1 161 111-275 4-164 (165)
80 1bi7_B P16INK4A, MTS1, multipl 99.9 1.3E-26 4.5E-31 189.3 11.5 147 210-363 5-152 (156)
81 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2E-26 6.9E-31 202.3 10.5 122 38-172 5-126 (239)
82 1d9s_A Cyclin-dependent kinase 99.9 7.9E-26 2.7E-30 180.0 12.5 131 210-347 5-136 (136)
83 1d9s_A Cyclin-dependent kinase 99.9 1.7E-25 5.7E-30 178.1 12.9 134 28-174 2-136 (136)
84 3t8k_A Uncharacterized protein 99.9 3E-26 1E-30 191.8 8.2 160 184-352 7-184 (186)
85 3t8k_A Uncharacterized protein 99.9 1.7E-25 5.8E-30 187.3 9.1 154 6-174 8-179 (186)
86 1bi7_B P16INK4A, MTS1, multipl 99.9 1.2E-24 4.2E-29 177.5 10.8 142 33-188 7-149 (156)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.9E-23 6.7E-28 163.9 15.6 126 37-174 1-126 (126)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 7.3E-24 2.5E-28 168.6 12.8 127 34-172 10-136 (136)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.1E-24 2.8E-28 166.1 11.5 126 216-347 1-126 (126)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 7.6E-23 2.6E-27 162.7 15.0 123 4-138 14-136 (136)
91 3c5r_A BARD-1, BRCA1-associate 99.9 1.2E-23 4E-28 167.7 8.8 121 246-371 5-125 (137)
92 3c5r_A BARD-1, BRCA1-associate 99.9 1.1E-23 3.9E-28 167.8 7.1 129 33-173 5-133 (137)
93 3aaa_C Myotrophin, protein V-1 99.9 5.4E-23 1.8E-27 160.5 8.9 115 248-367 4-118 (123)
94 3deo_A Signal recognition part 99.9 1E-22 3.4E-27 170.9 9.4 139 35-204 41-180 (183)
95 2b0o_E UPLC1; arfgap, structur 99.9 2.4E-22 8.2E-27 181.7 12.5 144 34-196 147-299 (301)
96 3ui2_A Signal recognition part 99.9 1.4E-23 4.8E-28 184.5 3.9 141 70-240 43-183 (244)
97 3deo_A Signal recognition part 99.9 4.9E-22 1.7E-26 166.7 12.8 136 5-171 45-181 (183)
98 2b0o_E UPLC1; arfgap, structur 99.9 7.4E-22 2.5E-26 178.5 14.4 140 217-367 151-298 (301)
99 3ui2_A Signal recognition part 99.9 5.8E-22 2E-26 174.2 12.8 143 34-207 41-184 (244)
100 3aaa_C Myotrophin, protein V-1 99.9 2.3E-22 7.9E-27 156.9 8.9 111 35-157 4-114 (123)
101 3ehr_A Osteoclast-stimulating 99.9 4.5E-23 1.5E-27 178.9 4.5 138 212-355 68-206 (222)
102 1dcq_A PYK2-associated protein 99.9 1E-21 3.4E-26 175.6 10.7 124 218-346 131-262 (278)
103 3ehr_A Osteoclast-stimulating 99.9 5E-22 1.7E-26 172.3 8.3 129 35-175 70-199 (222)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.5E-20 5E-25 138.5 11.2 92 37-139 1-92 (93)
105 3jue_A Arfgap with coiled-coil 99.8 9.4E-21 3.2E-25 175.0 9.8 147 214-365 196-347 (368)
106 3lvq_E ARF-GAP with SH3 domain 99.8 4.6E-20 1.6E-24 179.2 14.7 124 40-175 134-266 (497)
107 1dcq_A PYK2-associated protein 99.8 1.7E-19 5.9E-24 161.1 16.6 124 151-276 132-263 (278)
108 3lvq_E ARF-GAP with SH3 domain 99.8 2.1E-20 7.2E-25 181.6 11.5 140 219-363 134-281 (497)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.1E-20 7.2E-25 137.7 8.1 93 250-347 1-93 (93)
110 2l6b_A NR1C; ankyrin, consensu 99.8 9.1E-21 3.1E-25 145.9 6.0 108 247-359 5-112 (115)
111 3jue_A Arfgap with coiled-coil 99.8 5.2E-20 1.8E-24 170.1 9.6 149 181-332 197-348 (368)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.2E-19 4E-24 139.6 8.4 108 33-152 4-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 1.1E-17 3.9E-22 127.0 9.2 93 31-134 17-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 9.5E-16 3.2E-20 116.4 10.9 88 2-91 22-109 (110)
115 1gp8_A Protein (scaffolding pr 77.2 1.8 6E-05 23.9 2.2 20 4-23 13-32 (40)
116 3gvo_A Pumilio 2, pumilio homo 76.7 3.1 0.00011 37.6 5.3 125 5-136 38-166 (351)
117 3mkq_B Coatomer subunit alpha; 63.0 55 0.0019 25.9 9.5 132 5-171 9-140 (177)
118 3gvo_A Pumilio 2, pumilio homo 60.5 45 0.0015 29.9 9.3 157 7-170 76-238 (351)
119 3k49_A MRNA-binding protein PU 57.8 17 0.00057 33.0 6.0 159 5-170 43-207 (369)
120 3mkq_B Coatomer subunit alpha; 42.4 1.1E+02 0.0036 24.2 7.5 132 116-274 9-141 (177)
121 3zrh_A Ubiquitin thioesterase 37.5 84 0.0029 28.5 6.7 21 11-32 29-49 (454)
122 3k49_A MRNA-binding protein PU 35.9 22 0.00077 32.1 3.1 96 34-136 38-135 (369)
123 4f4s_A ATP synthase subunit 9, 20.8 75 0.0026 21.0 2.6 27 436-462 50-76 (76)
124 3a7m_A Flagellar protein FLIT; 20.3 31 0.0011 25.3 0.9 60 4-63 17-77 (122)
125 3zrh_A Ubiquitin thioesterase 20.0 3.8E+02 0.013 24.4 7.7 25 113-137 67-91 (454)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-58 Score=446.43 Aligned_cols=357 Identities=26% Similarity=0.367 Sum_probs=309.9
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664 4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG 83 (464)
Q Consensus 4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g 83 (464)
-.++|+.|++.|+.+.++.|++. +.+++..+..|.||||+|+..|+.+++++|++++++ ++.++..|.||||+|+..|
T Consensus 14 g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 14 GLTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHHHT
T ss_pred CCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCC
Confidence 45789999999999999999976 458888899999999999999999999999999998 7889999999999999999
Q ss_pred CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664 84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH 163 (464)
Q Consensus 84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~ 163 (464)
+.+++++|++++++++ ..+..|.||||+|+..|+.+++++|++.+... ...+..|.||||+|+..|+.+
T Consensus 92 ~~~~v~~Ll~~ga~~~----------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~ 160 (437)
T 1n11_A 92 HTNMVKLLLENNANPN----------LATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVR 160 (437)
T ss_dssp CHHHHHHHHHHTCCTT----------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHH
T ss_pred CHHHHHHHHhCCCCCC----------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHH
Confidence 9999999999998854 67788899999999999999999999888773 456778889999999999999
Q ss_pred HHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCc
Q 038664 164 IACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL 243 (464)
Q Consensus 164 ~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~ 243 (464)
++++|++.+.++ +..+..|.||||+|+..++.+++++|++++.+ ++..+..|.||||+|+..|+.+++++|++.+.+.
T Consensus 161 ~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 238 (437)
T 1n11_A 161 VAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238 (437)
T ss_dssp HHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 999999888876 77788888999999999999999999888877 6777888889999999999999999999888877
Q ss_pred cccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCc
Q 038664 244 AYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNT 323 (464)
Q Consensus 244 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t 323 (464)
+ ..+..|.||||+|+..|+.+++++|++++++ ++..+..|+||||+|++.|+.+++++|++. +.+++.+|..|+|
T Consensus 239 ~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t 313 (437)
T 1n11_A 239 N-AESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH---GVMVDATTRMGYT 313 (437)
T ss_dssp T-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH---TCCTTCCCSSCCC
T ss_pred C-CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CccCCCCCCCCCC
Confidence 6 5777888999999999999999998888887 488888888999999988888888888876 6778888888889
Q ss_pred HHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhHH--HhhcCCCCCC
Q 038664 324 PLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDI--LEGHGGSASG 381 (464)
Q Consensus 324 ~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~--l~~~g~~~~~ 381 (464)
|||+|+..|+.+++++|+++ |+|++.+|..|+|||++|...++.+.+ |..+|+++..
T Consensus 314 ~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 314 PLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372 (437)
T ss_dssp HHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred HHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCC
Confidence 99999988888899888876 888888888899999988887776653 6777877654
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6e-58 Score=441.54 Aligned_cols=346 Identities=25% Similarity=0.323 Sum_probs=325.2
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664 4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG 83 (464)
Q Consensus 4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g 83 (464)
..++|+.|++.|+.+.++.|++.+ .+++..+..|.||||+|+..|+.++|++|+++|++ ++..+..|.||||+|+..|
T Consensus 47 ~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g 124 (437)
T 1n11_A 47 VETPLHMAARAGHTEVAKYLLQNK-AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREG 124 (437)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcC
Confidence 457999999999999999988765 58898999999999999999999999999999998 7889999999999999999
Q ss_pred CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664 84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH 163 (464)
Q Consensus 84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~ 163 (464)
+.+++++|++.+++.. ..+..|.||||+|+..|+.+++++|++.+++ ++..+..|.|||++|+..|+.+
T Consensus 125 ~~~~v~~Ll~~~~~~~----------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~ 193 (437)
T 1n11_A 125 HVETVLALLEKEASQA----------CMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLD 193 (437)
T ss_dssp CHHHHHHHHHTTCCSC----------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSCCCHHHHHHHTTCHH
T ss_pred CHHHHHHHHhCCCCCc----------CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHH
Confidence 9999999999987743 5778899999999999999999999999988 4677899999999999999999
Q ss_pred HHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCc
Q 038664 164 IACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTL 243 (464)
Q Consensus 164 ~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~ 243 (464)
++++|++.+.++ +..+..+.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++++++.
T Consensus 194 ~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~ 271 (437)
T 1n11_A 194 IVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271 (437)
T ss_dssp HHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred HHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC
Confidence 999999999887 77888999999999999999999999999987 7889999999999999999999999999999988
Q ss_pred cccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCc
Q 038664 244 AYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNT 323 (464)
Q Consensus 244 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t 323 (464)
+ ..+..|.||||+|++.|+.+++++|++++.+ ++.+|..|+||||+|+.+|+.+++++|++. ++++|.+|..|+|
T Consensus 272 ~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t 346 (437)
T 1n11_A 272 N-LGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQH---QADVNAKTKLGYS 346 (437)
T ss_dssp T-CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT---TCCTTCCCTTSCC
T ss_pred C-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhc---CCCCCCCCCCCCC
Confidence 7 6889999999999999999999999999988 599999999999999999999999999988 7889999999999
Q ss_pred HHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhH
Q 038664 324 PLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND 370 (464)
Q Consensus 324 ~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~ 370 (464)
|||+|++.|+.+++++|+++ |++++.+|.+|+||+++|.+.++...
T Consensus 347 ~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~l~~A~~~g~~~~ 392 (437)
T 1n11_A 347 PLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYISV 392 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHCChHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCcHHH
Confidence 99999999999999999976 99999999999999999998887554
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6e-47 Score=351.85 Aligned_cols=295 Identities=20% Similarity=0.190 Sum_probs=253.0
Q ss_pred cCCCCchhHHHHhcCCHHHHHHHHHhCCccccccc-cCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCC
Q 038664 35 SQNRDTALHIAARFGHKNVVMEILELRPDLVSVEN-HKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDE 113 (464)
Q Consensus 35 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 113 (464)
+.+|+|+||.|+..|+.++|++||++|++ ++.++ ..|+||||+|+..|+.++|++|+++|+++. .++.
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~----------~~~~ 90 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV----------LRKK 90 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCT
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh----------hhcc
Confidence 34578999999999999999999999999 55555 469999999999999999999999998854 7888
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCc---------CCCCCCCC
Q 038664 114 EGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVL---------DHRGPNDL 184 (464)
Q Consensus 114 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~---------~~~~~~~~ 184 (464)
.+.+|++.++..+...++..++..+.+ .+..+..|.||+++|+..|+.++++++++++.++. ...+..|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~ 169 (337)
T 4g8k_A 91 NGATPFILAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 169 (337)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSC
T ss_pred CCCchhHHHHhcccchhhHHhhhccch-hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCC
Confidence 999999999999999999999999888 46788999999999999999999999999987761 23345688
Q ss_pred CHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCC----HHHHHHHhhcCCCccccccCCCCCccccccc
Q 038664 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGH----FEIACRLSDEDDTLAYERDCNGQSPLHLASE 260 (464)
Q Consensus 185 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 260 (464)
||||+|+..|+.+++++|+++.+..++..+..|.|+++.++..+. .+++++|+++|++++ .++..|+||||+|+.
T Consensus 170 T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n-~~d~~g~t~L~~a~~ 248 (337)
T 4g8k_A 170 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAVE 248 (337)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTT-CCCGGGCCHHHHHHH
T ss_pred cHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHH
Confidence 999999999999999999976444488999999999998876554 357889999999887 588899999999999
Q ss_pred CCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHH
Q 038664 261 NGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340 (464)
Q Consensus 261 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L 340 (464)
.|+.++++.|++.....++.+|.+|+||||+|+++|+.+++++|++. |+++|. .||||+|++.|+.++|++|
T Consensus 249 ~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~---GAd~n~-----~~~L~~A~~~~~~~iv~~L 320 (337)
T 4g8k_A 249 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR---GASTDC-----GDLVMTARRNYDHSLVKVL 320 (337)
T ss_dssp TTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT---SCSSTT-----CCHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCC-----CCHHHHHHHcCCHHHHHHH
Confidence 99999999999875555799999999999999999999999999987 566554 4699999999999999999
Q ss_pred Hhccccccccc
Q 038664 341 ARNMRVNIRAT 351 (464)
Q Consensus 341 l~~~~~d~~~~ 351 (464)
+++ |||+|..
T Consensus 321 l~~-GA~~d~~ 330 (337)
T 4g8k_A 321 LSH-GAKEDFH 330 (337)
T ss_dssp HHT-TCCC---
T ss_pred HHC-cCCCCCC
Confidence 976 9988864
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.8e-46 Score=351.01 Aligned_cols=298 Identities=17% Similarity=0.180 Sum_probs=192.0
Q ss_pred cCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCC
Q 038664 35 SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEE 114 (464)
Q Consensus 35 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
+..+.|+||.|+..|+.+.|+.|+......++..|..|.||||+|+..|+.+++++|++.+++. +.++..
T Consensus 21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----------~~~~~~ 90 (351)
T 3utm_A 21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV----------HAKDKG 90 (351)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTT
T ss_pred ccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CccCCC
Confidence 3444555555555555555555555433334555555555555555555555555555555542 244555
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcC
Q 038664 115 GNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKS 194 (464)
Q Consensus 115 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~ 194 (464)
|.||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++++.++ +..+..+.++++.++..+
T Consensus 91 g~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~ 168 (351)
T 3utm_A 91 GLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPE 168 (351)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHH
T ss_pred CCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhh
Confidence 55555555555555555555555555 2344555666666666666666666666655554 555556666666665555
Q ss_pred CHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccC---CcHHHHHHHH
Q 038664 195 NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASEN---GKLSLLKRLL 271 (464)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll 271 (464)
..+.+.+... ..++..++..++.+.++.++....... ..+..|.||||+|+.. +..+++++|+
T Consensus 169 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll 234 (351)
T 3utm_A 169 LRERLTYEFK-------------GHSLLQAAREADLAKVKKTLALEIINF-KQPQSHETALHCAVASLHPKRKQVAELLL 234 (351)
T ss_dssp HHHHHHHHHH-------------HHHHHHHHHTTCHHHHHHHTTTCCTTC-CCTTTCCCHHHHHHHCCSTTHHHHHHHHH
T ss_pred hHHHHHhhhc-------------ccHHHHHHHhccHHHHHHHHHhhcccc-cCCCCCCCHHHHHHHHhCccHHHHHHHHH
Confidence 4444444332 134666677777777777776665444 4566677777777777 5577888888
Q ss_pred HHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccc
Q 038664 272 HSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRAT 351 (464)
Q Consensus 272 ~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~ 351 (464)
+.+.+ ++.+|..|+||||+|+..|+.+++++|++. +++++.+|..|+||||+|++.|+.+++++|+++ |+|++.+
T Consensus 235 ~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~ 309 (351)
T 3utm_A 235 RKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKH---GAKMNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSII 309 (351)
T ss_dssp HTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred HcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCc
Confidence 77777 477777888888888888888888888776 677777888888888888888888888888865 8888888
Q ss_pred cccCCChHHhhc
Q 038664 352 NEKKQTALAIVQ 363 (464)
Q Consensus 352 n~~g~t~l~~a~ 363 (464)
|..|+||+++|.
T Consensus 310 ~~~g~tal~~a~ 321 (351)
T 3utm_A 310 SLQGFTAAQMGN 321 (351)
T ss_dssp CTTSCCHHHHSC
T ss_pred CCCCCChhhhhh
Confidence 888888888875
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=9.2e-46 Score=346.19 Aligned_cols=324 Identities=19% Similarity=0.209 Sum_probs=278.7
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664 4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG 83 (464)
Q Consensus 4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g 83 (464)
..++|+.|++.|+.+.+++++...+.+++..+..|.||||+|+..|+.++|++|+++|++ ++.++..|.||||+|+..|
T Consensus 24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g 102 (351)
T 3utm_A 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYG 102 (351)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred cchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHCC
Confidence 357899999999999999999988888999999999999999999999999999999998 7889999999999999999
Q ss_pred CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664 84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH 163 (464)
Q Consensus 84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~ 163 (464)
+.+++++|++++++. +..+..|.||||+|+..|+.+++++|++.+++ +...+..|.+|+++++..+..+
T Consensus 103 ~~~iv~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~~~~~~~ 171 (351)
T 3utm_A 103 HYEVTELLLKHGACV----------NAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRE 171 (351)
T ss_dssp CHHHHHHHHHTTCCT----------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCSSHHHHH
T ss_pred CHHHHHHHHHCCCCC----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCcchHHHhhhhhHH
Confidence 999999999999884 47889999999999999999999999999988 5678999999999999888888
Q ss_pred HHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHc---CCHHHHHHHhhcC
Q 038664 164 IACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAAL---GHFEIACRLSDED 240 (464)
Q Consensus 164 ~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~---~~~~~v~~Ll~~~ 240 (464)
.+.+.... .++..++..++.+.++.++..... ....+..|.||||+|+.. +..+++++|++.|
T Consensus 172 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g 237 (351)
T 3utm_A 172 RLTYEFKG-------------HSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237 (351)
T ss_dssp HHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT
T ss_pred HHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC
Confidence 88776652 467888999999999999988765 455678899999999999 5589999999999
Q ss_pred CCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCC
Q 038664 241 DTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLE 320 (464)
Q Consensus 241 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~ 320 (464)
.+++ .++..|+||||+|++.|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++|++. |++++.+|..
T Consensus 238 ~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~~~~ 312 (351)
T 3utm_A 238 ANVN-EKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSY---GSDPSIISLQ 312 (351)
T ss_dssp CCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTT
T ss_pred CCcC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCCCcCCC
Confidence 9988 6889999999999999999999999999988 599999999999999999999999999998 7889999999
Q ss_pred CCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCc
Q 038664 321 GNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSL 366 (464)
Q Consensus 321 g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~ 366 (464)
|+||+|+| +.+++++|.+.. .....++.+++..|.+.+
T Consensus 313 g~tal~~a----~~~~~~~l~~~~----~~~~~~~~~~l~~A~~~g 350 (351)
T 3utm_A 313 GFTAAQMG----NEAVQQILSEST----PMRTSDVDYRLLEASKAG 350 (351)
T ss_dssp SCCHHHHS----CHHHHHHHHHC-----------------------
T ss_pred CCChhhhh----hHHHHHHHHhcc----ccccCcceeehhhhhccC
Confidence 99999998 667888888652 334567778888877654
No 6
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.5e-43 Score=329.03 Aligned_cols=288 Identities=19% Similarity=0.238 Sum_probs=254.0
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhcCCCcccccC-CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664 5 ARVLFRALRRGDAATVRESARLNGNGILDMSQ-NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG 83 (464)
Q Consensus 5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g 83 (464)
.+.|+.||+.|+.+.|+.||+. |++++..+. .|+||||+||..|+.++|++|+++|++ ++.++..+.+|++.++..+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~ 103 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFILAAIAG 103 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhccCCCchhHHHHhcc
Confidence 4579999999999999999976 458986654 599999999999999999999999999 7889999999999999999
Q ss_pred CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccc---------cccccCCCcHHH
Q 038664 84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELI---------CYINKAGQSPLS 154 (464)
Q Consensus 84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~---------~~~~~~g~t~l~ 154 (464)
...++..+++.+.+ ++..+..|.||||+|+..|+.+++++|++.++++. ...+..|.||||
T Consensus 104 ~~~~~~~~~~~~~~----------~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~ 173 (337)
T 4g8k_A 104 SVKLLKLFLSKGAD----------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 173 (337)
T ss_dssp CHHHHHHHHTTTCC----------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred cchhhHHhhhccch----------hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Confidence 99999999998887 44789999999999999999999999999987642 233567899999
Q ss_pred HHHHcCCHHHHHHHHHh-cCcCcCCCCCCCCCHHHHHHHcCC----HHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCC
Q 038664 155 LAIDAGLTHIACCIIKE-KLSVLDHRGPNDLTLLHIAIIKSN----FVVMAKILEAKRDLINVLDKRDRNPLHYAAALGH 229 (464)
Q Consensus 155 ~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~ 229 (464)
+|+..|+.+++++|+++ +.++ +..+..|.++++.++..+. ..+++.|++++.+ ++.++..|+||||+|+..|+
T Consensus 174 ~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp HHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhh
Confidence 99999999999999975 6665 8899999999998876544 3577888999887 89999999999999999999
Q ss_pred HHHHHHHhhc-CCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCc
Q 038664 230 FEIACRLSDE-DDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLP 308 (464)
Q Consensus 230 ~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~ 308 (464)
.++++.|++. +.+++ .+|..|+||||+|++.|+.+++++|+++|++. + ..+|||+|+++|+.+++++|++.
T Consensus 252 ~~~v~~Ll~~~~~~vn-~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~-n-----~~~~L~~A~~~~~~~iv~~Ll~~- 323 (337)
T 4g8k_A 252 LGLVQRLLEQEHIEIN-DTDSDGKTALLLAVELKLKKIAELLCKRGAST-D-----CGDLVMTARRNYDHSLVKVLLSH- 323 (337)
T ss_dssp HHHHHHHHTSTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS-T-----TCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred hHHHHHHHHhcCCccc-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-C-----CCCHHHHHHHcCCHHHHHHHHHC-
Confidence 9999999987 45555 78999999999999999999999999999874 4 45799999999999999999998
Q ss_pred chhhhhhc
Q 038664 309 EIEDMINS 316 (464)
Q Consensus 309 ~~~~~~~~ 316 (464)
|+++|.
T Consensus 324 --GA~~d~ 329 (337)
T 4g8k_A 324 --GAKEDF 329 (337)
T ss_dssp --TCCC--
T ss_pred --cCCCCC
Confidence 666664
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.1e-44 Score=324.87 Aligned_cols=264 Identities=22% Similarity=0.250 Sum_probs=197.4
Q ss_pred CCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhc-CCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCC
Q 038664 72 SETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQ-DEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQ 150 (464)
Q Consensus 72 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~ 150 (464)
|.||||.|+..|+.+++++|++.+.+.+ .. +..|.||||+|+..|+.+++++|++.+++ ++..+..|.
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~ 73 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVN----------FQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGA 73 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCC
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcc----------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCC
Confidence 4556666666666666666665554422 22 44556666666666666666666666555 334455566
Q ss_pred cHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhh----------hcCCCCcH
Q 038664 151 SPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINV----------LDKRDRNP 220 (464)
Q Consensus 151 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~----------~~~~g~t~ 220 (464)
||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++.+.+ ++. .+..|.||
T Consensus 74 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~g~t~ 151 (285)
T 1wdy_A 74 TPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATA 151 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCCHHHHHTTCCCCCH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCC-cccccccHHHHHhhccCCCcH
Confidence 6666666666666666666665554 55555566666666666666666666666554 333 37789999
Q ss_pred HHHHHHcCCHHHHHHHhhc-CCCccccccCCCCCcccccccCCc----HHHHHHHHHHCCCcccccccCCCchhHHHHhc
Q 038664 221 LHYAAALGHFEIACRLSDE-DDTLAYERDCNGQSPLHLASENGK----LSLLKRLLHSYPDSIEFLDKKNRNILHLAAQN 295 (464)
Q Consensus 221 L~~a~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~ 295 (464)
||+|+..|+.+++++|++. +.+++ ..+..|.||||.|+..++ .+++++|++++.+ ++.+|..|+||||+|+..
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCC-ccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence 9999999999999999988 77766 678899999999999999 9999999999988 589999999999999999
Q ss_pred CchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccc
Q 038664 296 GHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNE 353 (464)
Q Consensus 296 ~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~ 353 (464)
|+.+++++|++.. +.+++.+|..|+||||+|++.++.+++++|+++ |++++.+|.
T Consensus 230 ~~~~~v~~Ll~~~--g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~-Ga~~~~~d~ 284 (285)
T 1wdy_A 230 KHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGDL 284 (285)
T ss_dssp TCHHHHHHHHHSS--SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred CCHHHHHHHHhcc--CCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCCcccc
Confidence 9999999999832 678899999999999999999999999999976 999998873
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-43 Score=321.36 Aligned_cols=265 Identities=22% Similarity=0.217 Sum_probs=193.0
Q ss_pred CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCC
Q 038664 37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN 116 (464)
Q Consensus 37 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~ 116 (464)
+|+|+||.|+..|+.+++++|++.++++....+..|.||||+|+..|+.+++++|++.+++.. ..+..|.
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~g~ 73 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV----------LRKKNGA 73 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTCC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc----------ccCCCCC
Confidence 355667777777777777777776666333336666677777777777777777776666532 4566667
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCC----------CCCCCCH
Q 038664 117 TPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHR----------GPNDLTL 186 (464)
Q Consensus 117 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~----------~~~~~~~ 186 (464)
||||+|+..|+.+++++|++.+++ ++..+..|.|||++|+..|+.+++++|++.+.++ +.. +..|.||
T Consensus 74 t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~ 151 (285)
T 1wdy_A 74 TPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATA 151 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcH
Confidence 777777777777777777776666 3455666677777777777777777777766655 333 5667888
Q ss_pred HHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCC----HHHHHHHhhcCCCccccccCCCCCcccccccCC
Q 038664 187 LHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGH----FEIACRLSDEDDTLAYERDCNGQSPLHLASENG 262 (464)
Q Consensus 187 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 262 (464)
||.|+..++.+++++|++..+..++..+..|.||||+|+..++ .+++++|++.|++++ .++..|.||||+|++.|
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS-CCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcC
Confidence 8888888888888888887333377788888888888888888 788888888888777 57778888888888888
Q ss_pred cHHHHHHHHH-HCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccC
Q 038664 263 KLSLLKRLLH-SYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSD 318 (464)
Q Consensus 263 ~~~~v~~Ll~-~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d 318 (464)
+.+++++|++ .+.+ ++.+|..|+||||+|++.++.+++++|++. |++++.+|
T Consensus 231 ~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~---Ga~~~~~d 283 (285)
T 1wdy_A 231 HLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKR---GASTDCGD 283 (285)
T ss_dssp CHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---SSCSCCSS
T ss_pred CHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHc---CCCCCccc
Confidence 8888888888 4444 588888888888888888888888888887 66677665
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.7e-44 Score=337.80 Aligned_cols=314 Identities=20% Similarity=0.246 Sum_probs=224.9
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664 4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG 83 (464)
Q Consensus 4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g 83 (464)
+..+|+.++..|+.+.++.+++... .+. .-.+++.-+...|+.+++++++.. ..+..|.||||+|+..+
T Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~g~t~L~~Aa~~~ 105 (373)
T 2fo1_E 37 SQHSLLEASYDGYIKRQRNELQHYS-LYP----NPQGYGNGNDFLGDFNHTNLQIPT------EPEPESPIKLHTEAAGS 105 (373)
T ss_dssp --------------------------------------------------------------------CCCHHHHHHHSS
T ss_pred cccccccccCCccccchhhhhhhhc-ccc----CccccCCCCCcccccccccccccc------CCCCCCccHHHHHhcCC
Confidence 4567888898999998888876443 222 223566778888999999888654 35678999999999955
Q ss_pred CHHHHHHHhcccCCCCCCcchHHHHhhcC-CCCCcHHHHHHHcCCHHHHHHHH--------HhCCccccccccCCCcHHH
Q 038664 84 NFGVAKIFMRPHGNGNNTGTFDDILRKQD-EEGNTPLHNAVRKCDGKMAFTMI--------RKDPELICYINKAGQSPLS 154 (464)
Q Consensus 84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll--------~~~~~~~~~~~~~g~t~l~ 154 (464)
.+++++|+... ++..+ ..|.||||+|+..|+.+++++|+ +.+.+ ++..|..|.||||
T Consensus 106 -~~~~~~L~~~~------------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-vn~~d~~g~TpL~ 171 (373)
T 2fo1_E 106 -YAITEPITRES------------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDCDENTPLM 171 (373)
T ss_dssp -SCCCSCCSTTT------------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHH
T ss_pred -chHHHHhcccc------------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-CcCCCCCCCCHHH
Confidence 47888876532 34566 78999999999999988877776 67777 5678899999999
Q ss_pred HHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCc--hhhhhhcCCCCcHHHHHHHcC---C
Q 038664 155 LAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKR--DLINVLDKRDRNPLHYAAALG---H 229 (464)
Q Consensus 155 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~g~t~L~~a~~~~---~ 229 (464)
+|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++.+. ..++..+..|.||||+|+..+ +
T Consensus 172 ~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~ 250 (373)
T 2fo1_E 172 LAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ 250 (373)
T ss_dssp HHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTH
T ss_pred HHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcch
Confidence 999999999999999999987 8888999999999999999999999998773 237888999999999999988 8
Q ss_pred HHHHHHHhhcCCCccc-------cccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHH
Q 038664 230 FEIACRLSDEDDTLAY-------ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVV 302 (464)
Q Consensus 230 ~~~v~~Ll~~~~~~~~-------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~ 302 (464)
.+++++|++.|++.+. ..+..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|+..|+.++++
T Consensus 251 ~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~ 330 (373)
T 2fo1_E 251 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 330 (373)
T ss_dssp HHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999988763 256689999999999999999999999985557999999999999999999999999
Q ss_pred HHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccc
Q 038664 303 FISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVN 347 (464)
Q Consensus 303 ~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d 347 (464)
+|++. +++++.+|..|+||||+|+..|+.+++++|+++ +++
T Consensus 331 ~Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~-~a~ 371 (373)
T 2fo1_E 331 YLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDRC-RPE 371 (373)
T ss_dssp HHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT-C--
T ss_pred HHHHc---CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc-Ccc
Confidence 99987 788999999999999999999999999999975 554
No 10
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.4e-41 Score=300.28 Aligned_cols=257 Identities=19% Similarity=0.196 Sum_probs=187.5
Q ss_pred CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCC
Q 038664 37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN 116 (464)
Q Consensus 37 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~ 116 (464)
+|+||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+..|+.+++++|++.+++. +..+..|.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----------~~~~~~g~ 70 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV----------NGVTADWH 70 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT----------TCCCTTSC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC----------CCCCCCCC
Confidence 578999999999999999999999888 7888889999999999999999999999988774 46788889
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCH
Q 038664 117 TPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNF 196 (464)
Q Consensus 117 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~ 196 (464)
||||+|+..|+.+++++|++.+++.. .+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.
T Consensus 71 t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~ 147 (261)
T 2xai_A 71 TPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQR 147 (261)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCH
Confidence 99999999999999999998887753 2445778888888888888888888777765 66667777777777777777
Q ss_pred HHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCC
Q 038664 197 VVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPD 276 (464)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 276 (464)
+++++|++.+.+ ++. +..|.||||+|++.|+.+++++|++.|++++ .+|..|+||+|+|+.++ ++++.|++++..
T Consensus 148 ~~v~~Ll~~g~~-~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~ 222 (261)
T 2xai_A 148 ACVKKLLESGAD-VNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQ-AKNAEGKRPVELVPPES--PLAQLFLEREGP 222 (261)
T ss_dssp HHHHHHHHHTCC-TTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGSCTTC--THHHHHHHC-CC
T ss_pred HHHHHHHHcCCC-CCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCChhhhccccc--cHHHHHHhccCC
Confidence 777777777765 443 6667777777777777777777777777665 56667777777776544 356666655432
Q ss_pred cccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHH
Q 038664 277 SIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILA 341 (464)
Q Consensus 277 ~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll 341 (464)
. .. .....++.+|..|+||+|.|.+...++.++.++
T Consensus 223 ~-~l----------------------------~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l 258 (261)
T 2xai_A 223 P-SL----------------------------MQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFL 258 (261)
T ss_dssp C-CH----------------------------HHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHH
T ss_pred c-cH----------------------------HHHHHHHHHHHhchhccccCcccCCcHHHHHHH
Confidence 1 00 001234455666777777777666666665554
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-41 Score=308.09 Aligned_cols=258 Identities=16% Similarity=0.154 Sum_probs=207.2
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhCC----------ccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCC
Q 038664 111 QDEEGNTPLHNAVRKCDGKMAFTMIRKDP----------ELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRG 180 (464)
Q Consensus 111 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~----------~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~ 180 (464)
....|.|+||+|+..|+.+.+..++..++ ......+..|.||||+|+..|+.+++++|++.+.++ +..+
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~ 89 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIIT 89 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEEC
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcC
Confidence 45678999999999999877777665532 223456889999999999999999999999999887 8889
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCccccccc
Q 038664 181 PNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASE 260 (464)
Q Consensus 181 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 260 (464)
..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++.. .+..|.||||+|+.
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~ 166 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAAR 166 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHH
Confidence 9999999999999999999999999887 88999999999999999999999999999999876 35569999999999
Q ss_pred CCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHH
Q 038664 261 NGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340 (464)
Q Consensus 261 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L 340 (464)
.|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++. +++++. |..|+||||+|++.++.+++++|
T Consensus 167 ~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~-~~~g~t~L~~A~~~~~~~~v~~L 241 (285)
T 3d9h_A 167 RGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLES---GADVNQ-GKGQDSPLHAVVRTASEELACLL 241 (285)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHT---TCCTTC-CBTTBCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHC---CCCCCC-CCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999999999988 599999999999999999999999999988 677774 88999999999999999999999
Q ss_pred HhccccccccccccCCChHHhhccCchhhHHHhhc-CCC
Q 038664 341 ARNMRVNIRATNEKKQTALAIVQPSLHQNDILEGH-GGS 378 (464)
Q Consensus 341 l~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~l~~~-g~~ 378 (464)
+++ |+|++.+|.+|+||+++|........+|..+ |++
T Consensus 242 l~~-gad~~~~d~~g~t~l~~A~~~~~~~~~Ll~~~~a~ 279 (285)
T 3d9h_A 242 MDF-GADTQAKNAEGKRPVELVPPESPLAQLFLEREGAS 279 (285)
T ss_dssp HHT-TCCTTCCCTTSCCGGGGSCTTSHHHHHHHHHC---
T ss_pred HHC-CCCCCCcCCCCCCHHHHhcCccHHHHHHHHhhccC
Confidence 976 9999999999999999999776666665554 543
No 12
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=9e-43 Score=327.46 Aligned_cols=308 Identities=19% Similarity=0.245 Sum_probs=223.3
Q ss_pred CchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcH
Q 038664 39 DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTP 118 (464)
Q Consensus 39 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~ 118 (464)
..+|+.++..|+.+.++.++++..+.. .-.+++.-+...|+.+++++++.. ..+..|.||
T Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~---------------~~~~~g~t~ 97 (373)
T 2fo1_E 38 QHSLLEASYDGYIKRQRNELQHYSLYP-----NPQGYGNGNDFLGDFNHTNLQIPT---------------EPEPESPIK 97 (373)
T ss_dssp ----------------------------------------------------------------------------CCCH
T ss_pred ccccccccCCccccchhhhhhhhcccc-----CccccCCCCCcccccccccccccc---------------CCCCCCccH
Confidence 456788889999999999998776632 223566778888999999988743 467789999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCccccccc-cCCCcHHHHHHHcCCHHHHHHHH--------HhcCcCcCCCCCCCCCHHHH
Q 038664 119 LHNAVRKCDGKMAFTMIRKDPELICYIN-KAGQSPLSLAIDAGLTHIACCII--------KEKLSVLDHRGPNDLTLLHI 189 (464)
Q Consensus 119 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~g~~~~~~~Ll--------~~~~~~~~~~~~~~~~~l~~ 189 (464)
||+|+..+. +++++|+... .+..+ ..|.||||+|+..|+.+++++|+ +.+.++ +..+..|.||||+
T Consensus 98 L~~Aa~~~~-~~~~~L~~~~---~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~ 172 (373)
T 2fo1_E 98 LHTEAAGSY-AITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLML 172 (373)
T ss_dssp HHHHHHSSS-CCCSCCSTTT---TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHH
T ss_pred HHHHhcCCc-hHHHHhcccc---ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHH
Confidence 999999654 7777776543 33455 78999999999999988877776 677776 8889999999999
Q ss_pred HHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcC---CCccccccCCCCCcccccccCC---c
Q 038664 190 AIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDED---DTLAYERDCNGQSPLHLASENG---K 263 (464)
Q Consensus 190 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~tpL~~A~~~g---~ 263 (464)
|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.+ .+.. ..+..|.||||+|+..+ +
T Consensus 173 A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~d~~g~t~L~~A~~~~~~~~ 250 (373)
T 2fo1_E 173 AVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-ELDRNGMTALMIVAHNEGRDQ 250 (373)
T ss_dssp HHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS-CCCTTSCCHHHHHHHSCSTTH
T ss_pred HHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh-hcCCCCCCHHHHHHHhCCcch
Confidence 9999999999999999988 7899999999999999999999999999988 4555 57889999999999998 9
Q ss_pred HHHHHHHHHHCCCcccc--------cccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCch
Q 038664 264 LSLLKRLLHSYPDSIEF--------LDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFN 335 (464)
Q Consensus 264 ~~~v~~Ll~~~~~~~~~--------~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~ 335 (464)
.+++++|++++++. +. .|..|+||||+|+..|+.+++++|++.. +.+++.+|..|+||||+|+..|+.+
T Consensus 251 ~~~v~~Ll~~g~~~-~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~n~~d~~g~TpL~~A~~~g~~~ 327 (373)
T 2fo1_E 251 VASAKLLVEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK--GSNKDKQDEDGKTPIMLAAQEGRIE 327 (373)
T ss_dssp HHHHHHHHHHTCCS-SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS--CCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHHHHHHHCCCCc-ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc--CCCccCcCCCCCCHHHHHHHcCCHH
Confidence 99999999999884 54 5778999999999999999999999763 3789999999999999999999999
Q ss_pred HHHHHHhccccccccccccCCChHHhhccCchhhHH--HhhcCC
Q 038664 336 IVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDI--LEGHGG 377 (464)
Q Consensus 336 ~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~--l~~~g~ 377 (464)
++++|+++ |++++.+|..|+||+++|...++.+.+ |..+++
T Consensus 328 iv~~Ll~~-gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a 370 (373)
T 2fo1_E 328 VVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370 (373)
T ss_dssp HHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHHHc-CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 99999986 999999999999999999998887764 555554
No 13
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=300.76 Aligned_cols=252 Identities=21% Similarity=0.241 Sum_probs=166.1
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcC----------CCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCC
Q 038664 4 VARVLFRALRRGDAATVRESARLNG----------NGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSE 73 (464)
Q Consensus 4 ~~~~L~~A~~~g~~~~~~~ll~~~~----------~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~ 73 (464)
..+.||.|++.|+.+.+.+++...+ ..++..+..|+||||+||..|+.+++++|++.+++ ++.++..|.
T Consensus 15 ~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~~~g~ 93 (285)
T 3d9h_A 15 VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHV 93 (285)
T ss_dssp ---------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCEECTTCC
T ss_pred HHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCC
Confidence 3567788888888777777554432 12345677788888888888888888888888777 667777888
Q ss_pred CHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHH
Q 038664 74 TPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPL 153 (464)
Q Consensus 74 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 153 (464)
||||+|+..|+.+++++|++.+++. +.++..|.||||+|+..|+.+++++|++.++++. .+..|.|||
T Consensus 94 t~L~~A~~~g~~~~v~~Ll~~ga~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L 161 (285)
T 3d9h_A 94 SPLHEACLGGHLSCVKILLKHGAQV----------NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPI 161 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCS----------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHH
T ss_pred CHHHHHHHCCcHHHHHHHHHCCCCC----------CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHH
Confidence 8888888888888888888877663 3567778888888888888888888888777642 234477777
Q ss_pred HHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHH
Q 038664 154 SLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA 233 (464)
Q Consensus 154 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v 233 (464)
|+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++.+.+ ++ .+..|.||||+|+..|+.+++
T Consensus 162 ~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v 238 (285)
T 3d9h_A 162 HEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELA 238 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHHH
Confidence 7777777777777777777765 66677777777777777777777777777665 44 366777777777777777777
Q ss_pred HHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHC
Q 038664 234 CRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSY 274 (464)
Q Consensus 234 ~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 274 (464)
++|+++|+++. .+|..|+||||+|+ ++.+++++|+++.
T Consensus 239 ~~Ll~~gad~~-~~d~~g~t~l~~A~--~~~~~~~~Ll~~~ 276 (285)
T 3d9h_A 239 CLLMDFGADTQ-AKNAEGKRPVELVP--PESPLAQLFLERE 276 (285)
T ss_dssp HHHHHTTCCTT-CCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred HHHHHCCCCCC-CcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence 77777777666 56777777777777 3456777777763
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6.4e-41 Score=299.27 Aligned_cols=241 Identities=18% Similarity=0.198 Sum_probs=160.0
Q ss_pred CCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCC
Q 038664 71 KSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQ 150 (464)
Q Consensus 71 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~ 150 (464)
+|+||||+|+..|+.+++++|++.+++. +.++..|.||||+|+..|+.+++++|++.+++ ++..+..|.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~ 70 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAV----------NIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWH 70 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCS----------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCC----------CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCC
Confidence 4677777777777777777777776653 35666677777777777777777777777665 345566666
Q ss_pred cHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCH
Q 038664 151 SPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHF 230 (464)
Q Consensus 151 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~ 230 (464)
||||+|+..|+.+++++|++.+.+. + .+.+|.||||+|+..|+.
T Consensus 71 t~L~~A~~~~~~~~v~~Ll~~g~~~-~-----------------------------------~~~~g~t~L~~A~~~~~~ 114 (261)
T 2xai_A 71 TPLFNACVSGSWDCVNLLLQHGASV-Q-----------------------------------PESDLASPIHEAARRGHV 114 (261)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCS-S-----------------------------------CSCTTCCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCC-C-----------------------------------CCCCCCCHHHHHHHcCcH
Confidence 6666666666666666666655543 1 122355666666666666
Q ss_pred HHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcch
Q 038664 231 EIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEI 310 (464)
Q Consensus 231 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~ 310 (464)
+++++|++.|++++ ..+..|.||||+|+..|+.+++++|++++++. +. +..|+||||+|+..++.+++++|++.
T Consensus 115 ~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~--- 188 (261)
T 2xai_A 115 ECVNSLIAYGGNID-HKISHLGTPLYLACENQQRACVKKLLESGADV-NQ-GKGQDSPLHAVARTASEELACLLMDF--- 188 (261)
T ss_dssp HHHHHHHHTTCCTT-CCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT-TC-CBTTBCHHHHHHHHTCHHHHHHHHHT---
T ss_pred HHHHHHHHcCCCCC-cCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CC-CCCCCChHHHHHHcCCHHHHHHHHHc---
Confidence 66666666666555 45666666666666666667777777666663 43 66677777777777777777777776
Q ss_pred hhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccc-------cccccccccCCChHHhhccCc
Q 038664 311 EDMINSSDLEGNTPLHLAAINNHFNIVLILARNMR-------VNIRATNEKKQTALAIVQPSL 366 (464)
Q Consensus 311 ~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~-------~d~~~~n~~g~t~l~~a~~~~ 366 (464)
+++++.+|..|+||||+|+..+ +++++|++..+ .+++.+|..|+||++.+.+..
T Consensus 189 gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~ 249 (261)
T 2xai_A 189 GADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLV 249 (261)
T ss_dssp TCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSS
T ss_pred CCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccC
Confidence 5667777777777777777443 46777776522 356788999999999998654
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2e-41 Score=318.06 Aligned_cols=287 Identities=17% Similarity=0.151 Sum_probs=190.9
Q ss_pred CcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHh
Q 038664 30 GILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILR 109 (464)
Q Consensus 30 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~ 109 (464)
+.+..|..|.||||+||..|+.++|++|++.|++ ++..|..|.||||+|+..|+.+++++|++.+++.
T Consensus 12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----------- 79 (364)
T 3ljn_A 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH----------- 79 (364)
T ss_dssp ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----------
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----------
Confidence 4456788899999999999999999999999988 7889999999999999999999999999998853
Q ss_pred hcCCCCCcHHHHHHHcCCHHHHHHHHHh----CCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCC
Q 038664 110 KQDEEGNTPLHNAVRKCDGKMAFTMIRK----DPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLT 185 (464)
Q Consensus 110 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~ 185 (464)
.+..|.||||+|+..|+.+++++|++. +......... .....+ .... .+..+..|.|
T Consensus 80 -~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-----------~~~~~~------~~~~-~~~~~~~g~t 140 (364)
T 3ljn_A 80 -SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNE-----------CDEREV------NEIG-SHVKHCKGQT 140 (364)
T ss_dssp -CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTC-----------CCCCCE------EEET-TEEEEESCCC
T ss_pred -cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhh-----------cchHhh------hhhc-cccCCCCCCC
Confidence 235789999999999999999999998 4442110000 000000 0000 1223444555
Q ss_pred HHHHHHHcC--CHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCC-----ccccccCCCCCccccc
Q 038664 186 LLHIAIIKS--NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDT-----LAYERDCNGQSPLHLA 258 (464)
Q Consensus 186 ~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~-----~~~~~~~~g~tpL~~A 258 (464)
|||+|+..| +.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++ .+ ..+..|.||||+|
T Consensus 141 ~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~~~g~t~L~~A 218 (364)
T 3ljn_A 141 ALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD-YANKQGNSHLHWA 218 (364)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT-CCCTTCCCTTHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc-ccCCCCCcHHHHH
Confidence 555555555 55666666665554 555566666666666666666666666666555 33 4566666666666
Q ss_pred ccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchh---------hhhhccCCCCCcHHHHHH
Q 038664 259 SENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIE---------DMINSSDLEGNTPLHLAA 329 (464)
Q Consensus 259 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~---------~~~~~~d~~g~t~Lh~A~ 329 (464)
+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++..... ......+..|+|||++|+
T Consensus 219 ~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa 297 (364)
T 3ljn_A 219 ILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAA 297 (364)
T ss_dssp HTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSS
T ss_pred HHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhh
Confidence 666666666666666666 3666666666666666666666666666653211 111125667888888888
Q ss_pred HcCCchHHHHHHhccccccccc
Q 038664 330 INNHFNIVLILARNMRVNIRAT 351 (464)
Q Consensus 330 ~~~~~~~v~~Ll~~~~~d~~~~ 351 (464)
..++.+.+..|+.. +++....
T Consensus 298 ~~~~~~~v~~ll~~-~~~~~~~ 318 (364)
T 3ljn_A 298 ADPSKQEVLQLLQE-KLDEVVR 318 (364)
T ss_dssp CCHHHHHHHHHHHH-HHHHHHT
T ss_pred hccCHHHHHHHHHH-HHHHHhh
Confidence 88887777777765 5554333
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=4e-41 Score=299.24 Aligned_cols=230 Identities=23% Similarity=0.242 Sum_probs=110.5
Q ss_pred CcccccCCCCchhHHHHhcC-------------CHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccC
Q 038664 30 GILDMSQNRDTALHIAARFG-------------HKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHG 96 (464)
Q Consensus 30 ~~~~~~~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 96 (464)
+++.+|.+|+||||+|+..| +.+++++|++.|+++....+..|.||||+|+..|+.+++++|++.++
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 56678888999999999877 67777777777777555567777777777777777777777777776
Q ss_pred CCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCc
Q 038664 97 NGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVL 176 (464)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~ 176 (464)
+. +.++..|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.+.++
T Consensus 82 ~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~- 150 (253)
T 1yyh_A 82 DA----------NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV- 150 (253)
T ss_dssp CT----------TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-
T ss_pred CC----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-
Confidence 63 3566677777777777777777777777666444555666666666666666666666666655544
Q ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCccc
Q 038664 177 DHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLH 256 (464)
Q Consensus 177 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~ 256 (464)
+..+..|.||||+|+..++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++. .+|..|.||++
T Consensus 151 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~ 228 (253)
T 1yyh_A 151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRD-ITDHMDRLPRD 228 (253)
T ss_dssp TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHH
T ss_pred CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc-ccccCCCCHHH
Confidence 44444444555555544444444444444444 34444444444444444444444444444444443 23444444444
Q ss_pred ccccCCcHHHHHHHHH
Q 038664 257 LASENGKLSLLKRLLH 272 (464)
Q Consensus 257 ~A~~~g~~~~v~~Ll~ 272 (464)
+|+++|+.+++++|..
T Consensus 229 ~A~~~g~~~i~~~l~~ 244 (253)
T 1yyh_A 229 IAQERMHHDIVRLLDL 244 (253)
T ss_dssp HHHHTTCHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHH
Confidence 4444444444444443
No 17
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=9.6e-42 Score=320.26 Aligned_cols=274 Identities=17% Similarity=0.143 Sum_probs=220.1
Q ss_pred ccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc
Q 038664 65 VSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICY 144 (464)
Q Consensus 65 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~ 144 (464)
.+..|..|.||||+|+..|+.++|++|++.+++. +.++..|.||||+|+..|+.+++++|++.+++.
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~----------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--- 79 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP----------TIQNRFGCTALHLACKFGCVDTAKYLASVGEVH--- 79 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT----------TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----------cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---
Confidence 3456778889999999999999999999888774 467888899999999999999999999888753
Q ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHH
Q 038664 145 INKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYA 224 (464)
Q Consensus 145 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a 224 (464)
.+..|.||||+|+..|+.+++++|++.+... +..+-.......... ......+..+..|.||||+|
T Consensus 80 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~t~L~~A 145 (364)
T 3ljn_A 80 SLWHGQKPIHLAVMANKTDLVVALVEGAKER-------GQMPESLLNECDERE-------VNEIGSHVKHCKGQTALHWC 145 (364)
T ss_dssp CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHH-------TCCHHHHHTCCCCCC-------EEEETTEEEEESCCCHHHHH
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHHhcccc-------CCCHHHHHhhcchHh-------hhhhccccCCCCCCCHHHHH
Confidence 3457888888888888888888888873221 000000000000000 00011344788999999999
Q ss_pred HHcC--CHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCc----ccccccCCCchhHHHHhcCch
Q 038664 225 AALG--HFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDS----IEFLDKKNRNILHLAAQNGHA 298 (464)
Q Consensus 225 ~~~~--~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~----~~~~d~~g~t~L~~A~~~~~~ 298 (464)
+..| +.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|++++++. ++..|..|+||||+|+..|+.
T Consensus 146 ~~~g~~~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~ 224 (364)
T 3ljn_A 146 VGLGPEYLEMIKILVQLGASPT-AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224 (364)
T ss_dssp HHSCGGGHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCH
T ss_pred HHcCCchHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCH
Confidence 9999 9999999999999988 68899999999999999999999999999883 588999999999999999999
Q ss_pred HHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcccccccc------------ccccCCChHHhhccCc
Q 038664 299 NVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRA------------TNEKKQTALAIVQPSL 366 (464)
Q Consensus 299 ~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~------------~n~~g~t~l~~a~~~~ 366 (464)
+++++|++. +++++.+|..|+||||+|++.|+.+++++|+++ |++++. .+..+.||+..|...+
T Consensus 225 ~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~ 300 (364)
T 3ljn_A 225 DVAMRFVEM---GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300 (364)
T ss_dssp HHHHHHHTT---TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred HHHHHHHHc---CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccccccchhhhhcc
Confidence 999999997 788999999999999999999999999999986 666533 6778999999999887
Q ss_pred hhhH
Q 038664 367 HQND 370 (464)
Q Consensus 367 ~~~~ 370 (464)
+.+.
T Consensus 301 ~~~~ 304 (364)
T 3ljn_A 301 SKQE 304 (364)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 6554
No 18
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.6e-40 Score=295.40 Aligned_cols=230 Identities=19% Similarity=0.191 Sum_probs=145.5
Q ss_pred HhhcCCCCCcHHHHHHHcC-------------CHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 038664 108 LRKQDEEGNTPLHNAVRKC-------------DGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLS 174 (464)
Q Consensus 108 ~~~~~~~g~t~L~~A~~~~-------------~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~ 174 (464)
++.+|.+|.||||+|+..| +.+++++|++.++++....+..|.||||+|+..|+.+++++|++.+.+
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 5678899999999999977 777777787777776666677777888888877777778877777776
Q ss_pred CcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCc
Q 038664 175 VLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSP 254 (464)
Q Consensus 175 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tp 254 (464)
+ +..+..|.||||+|+..++.+++++|++.++..++..+..|.||||+|+..|+.+++++|++.|++++ .++..|.||
T Consensus 83 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~ 160 (253)
T 1yyh_A 83 A-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSA 160 (253)
T ss_dssp T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT-CBCTTSCBH
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC-CcCCCCCCH
Confidence 6 66777777777777777777777777777764467777777777777777777777777777777766 466777777
Q ss_pred ccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCc
Q 038664 255 LHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHF 334 (464)
Q Consensus 255 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 334 (464)
||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++. +++++.+|..|+||||+|++.|+.
T Consensus 161 L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~g~~ 236 (253)
T 1yyh_A 161 LHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHH 236 (253)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCccccccCCCCHHHHHHHcCCH
Confidence 7777777777777777777776 477777777777777777777777777776 566777777777777777777777
Q ss_pred hHHHHHHhc
Q 038664 335 NIVLILARN 343 (464)
Q Consensus 335 ~~v~~Ll~~ 343 (464)
+++++|...
T Consensus 237 ~i~~~l~~~ 245 (253)
T 1yyh_A 237 DIVRLLDLE 245 (253)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 777777643
No 19
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.6e-40 Score=299.45 Aligned_cols=264 Identities=19% Similarity=0.192 Sum_probs=170.1
Q ss_pred ccccCCCCchhHHHHhcCCHHHHHHHHHhCCc--cccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHh
Q 038664 32 LDMSQNRDTALHIAARFGHKNVVMEILELRPD--LVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILR 109 (464)
Q Consensus 32 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~ 109 (464)
+.++..|+||||+||..|+.++|++|++.+++ .++.++..|.||||+|+..|+.+++++|+++|++.+
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---------- 72 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL---------- 72 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS----------
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------
Confidence 35677788888888888888888888887665 256677788888888888888888888888777643
Q ss_pred hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHH
Q 038664 110 KQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHI 189 (464)
Q Consensus 110 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~ 189 (464)
.++..|.||||+|+..|+.+++++|++.++....... .. . +.... ...
T Consensus 73 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~---~~--~--------------~~~~~---~~~---------- 120 (282)
T 1oy3_D 73 VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS---DT--Y--------------LTQSQ---DCT---------- 120 (282)
T ss_dssp CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------------------------------
T ss_pred CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhH---HH--H--------------hhccc---ccC----------
Confidence 5677778888888888888888888777665321100 00 0 00000 001
Q ss_pred HHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHH-HHHHHhhcCCCccccccCCCCCcccccccCCcHHHHH
Q 038664 190 AIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFE-IACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK 268 (464)
Q Consensus 190 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~-~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 268 (464)
...+.++++.++..+... ....+...+.... ..+..|.||||+|+..|+.++++
T Consensus 121 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~ 175 (282)
T 1oy3_D 121 ------------------------PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE-AENYDGHTPLHVAVIHKDAEMVR 175 (282)
T ss_dssp -----------------------------------------------CCCGGGGTT-CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ------------------------cchhcchhhhccccccchhhhhhhhhhhhcCC-CcCCCCcCHHHHHHHcCCHHHHH
Confidence 112223333333332222 2223333333443 56777888888888888888888
Q ss_pred HHHHHCCCccccccc-CCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccc
Q 038664 269 RLLHSYPDSIEFLDK-KNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVN 347 (464)
Q Consensus 269 ~Ll~~~~~~~~~~d~-~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d 347 (464)
+|++++++. +..+. .|+||||+|+..|+.+++++|++. +++++.+|..|+||||+|++.++.+++++|+++ |++
T Consensus 176 ~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~ 250 (282)
T 1oy3_D 176 LLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGSALLRPNPILARLLRAH-GAP 250 (282)
T ss_dssp HHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCC
T ss_pred HHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHc---CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHc-CCC
Confidence 888888874 66664 499999999999999999999987 788999999999999999999999999999976 999
Q ss_pred cccccccCCChHHhhccCch
Q 038664 348 IRATNEKKQTALAIVQPSLH 367 (464)
Q Consensus 348 ~~~~n~~g~t~l~~a~~~~~ 367 (464)
++.+|..|.||+++|.....
T Consensus 251 ~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 251 EPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp CCCCC---------------
T ss_pred cCcCCCcccccccccCCccc
Confidence 99999999999999985543
No 20
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=9.2e-39 Score=281.41 Aligned_cols=229 Identities=19% Similarity=0.287 Sum_probs=178.7
Q ss_pred CcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHh
Q 038664 30 GILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILR 109 (464)
Q Consensus 30 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~ 109 (464)
+++..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|++.+++.+
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------- 71 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD---------- 71 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC----------
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC----------
Confidence 5567788899999999999999999999999888 67788899999999999999999999999887743
Q ss_pred hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHH
Q 038664 110 KQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHI 189 (464)
Q Consensus 110 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~ 189 (464)
.++..|.||||+|+..|+.+++++|++.++...+..+..|.|||++|+..|+.+++++|++.+.++ +..+..|.||||+
T Consensus 72 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~ 150 (237)
T 3b7b_A 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHW 150 (237)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHH
Confidence 677788899999999999999999888885556667777888888888888888888888877765 6666677777777
Q ss_pred HHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHH
Q 038664 190 AIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKR 269 (464)
Q Consensus 190 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 269 (464)
|+..++.+++++|++.+.+ ++..|..|.||||+|++.++.+++++|+++|+++. .+|..|.||||+|+..|+.+.+..
T Consensus 151 A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~t~l~~A~~~~~~~~~~~ 228 (237)
T 3b7b_A 151 AAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT-LKNKEGETPLQCASLNSQVWSALQ 228 (237)
T ss_dssp HHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHSCTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC-ccCCCCCCHHHHHHHHHHHHHHHH
Confidence 7777777777777777665 56666777777777777777777777777776665 466667777777777776655555
Q ss_pred HHH
Q 038664 270 LLH 272 (464)
Q Consensus 270 Ll~ 272 (464)
|++
T Consensus 229 l~~ 231 (237)
T 3b7b_A 229 MSK 231 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 21
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.7e-39 Score=284.71 Aligned_cols=229 Identities=17% Similarity=0.234 Sum_probs=196.8
Q ss_pred ccccCCCCchhHHHHhcCCHHHHHHHHH----hCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHH
Q 038664 32 LDMSQNRDTALHIAARFGHKNVVMEILE----LRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDI 107 (464)
Q Consensus 32 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 107 (464)
+..|.+|+||||+||..|+.+++++|++ .+.+ ++..+..|.||||+|+..|+.+++++|++.+++..
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------- 73 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-------- 73 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc--------
Confidence 3578899999999999999999999997 4555 78889999999999999999999999999988744
Q ss_pred HhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCc---cccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCC-CCC
Q 038664 108 LRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPE---LICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRG-PND 183 (464)
Q Consensus 108 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~---~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~~ 183 (464)
..+..|.||||+|+..++.+++++|++.++. .....+..|.||||+|+..|+.+++++|++.+.++ +..+ ..|
T Consensus 74 --~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g 150 (241)
T 1k1a_A 74 --ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSG 150 (241)
T ss_dssp --CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTC
T ss_pred --ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCC
Confidence 6788999999999999999999999999872 25567888999999999999999999999998887 5555 788
Q ss_pred CCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCc
Q 038664 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGK 263 (464)
Q Consensus 184 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 263 (464)
.||||+|+..++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++. .++..|.|||++|+..|+
T Consensus 151 ~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~ 228 (241)
T 1k1a_A 151 RSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS-LKNCHNDTPLMVARSRRV 228 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCTTTTCSSHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC-CcCCCCCCHHHHHHhcCc
Confidence 9999999999999999999999887 78888999999999999999999999999998887 688889999999999999
Q ss_pred HHHHHHHHHHC
Q 038664 264 LSLLKRLLHSY 274 (464)
Q Consensus 264 ~~~v~~Ll~~~ 274 (464)
.++++.|++.+
T Consensus 229 ~~i~~~l~~~~ 239 (241)
T 1k1a_A 229 IDILRGKATRP 239 (241)
T ss_dssp HHHHTC-----
T ss_pred HHHHhhhccCC
Confidence 99999888764
No 22
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.4e-39 Score=294.54 Aligned_cols=247 Identities=17% Similarity=0.136 Sum_probs=159.7
Q ss_pred hhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcc--ccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCH
Q 038664 109 RKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPEL--ICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTL 186 (464)
Q Consensus 109 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~ 186 (464)
+.+|..|.||||+|+..|+.+++++|++.++.. .+..+..|.||||+|+..|+.+++++|++++.++ +..+..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tp 81 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTA 81 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCH
Confidence 356667777777777777777777777765542 3455666667777777666666666666666665 5556666666
Q ss_pred HHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHH
Q 038664 187 LHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSL 266 (464)
Q Consensus 187 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 266 (464)
||+|+..++.+++++|++.++.. ..... .+ ++.... ......+.++++.++..+....
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~--~~----------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 139 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSH-PRDAS--DT----------------YLTQSQ---DCTPDTSHAPAAVDSQPNPENE 139 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSS-CCCC----------------------------------------------------
T ss_pred HHHHHHcCCcchhHhhhccCCCC-chhhH--HH----------------Hhhccc---ccCcchhcchhhhccccccchh
Confidence 66666666666666666655431 10000 00 000000 0123456678887777665555
Q ss_pred HHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCC-CCcHHHHHHHcCCchHHHHHHhccc
Q 038664 267 LKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLE-GNTPLHLAAINNHFNIVLILARNMR 345 (464)
Q Consensus 267 v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~-g~t~Lh~A~~~~~~~~v~~Ll~~~~ 345 (464)
+..++......++..+..|+||||+|+..|+.+++++|++. +++++.++.. |+||||+|++.|+.+++++|+++ |
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-g 215 (282)
T 1oy3_D 140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA---GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-G 215 (282)
T ss_dssp ----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred hhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-C
Confidence 44444333334688899999999999999999999999987 7888988855 99999999999999999999976 9
Q ss_pred cccccccccCCChHHhhccCchhhH--HHhhcCCCCCCC
Q 038664 346 VNIRATNEKKQTALAIVQPSLHQND--ILEGHGGSASGT 382 (464)
Q Consensus 346 ~d~~~~n~~g~t~l~~a~~~~~~~~--~l~~~g~~~~~~ 382 (464)
++++.+|..|+|||++|...++.+. +|..+|+.+...
T Consensus 216 ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~ 254 (282)
T 1oy3_D 216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED 254 (282)
T ss_dssp CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCC
T ss_pred CCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcC
Confidence 9999999999999999998888665 488899887543
No 23
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.8e-38 Score=278.43 Aligned_cols=226 Identities=21% Similarity=0.251 Sum_probs=177.1
Q ss_pred CCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCC
Q 038664 36 QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEG 115 (464)
Q Consensus 36 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g 115 (464)
..+++|||.|+..|+.+.+++|++.++...+..+..|.||||+|+..|+.+++++|++.+++.+ .++..|
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~g 73 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAG 73 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC----------CCCTTS
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC----------CcCCCC
Confidence 3567889999999999999999988887777888889999999999999999999998887643 677788
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCC
Q 038664 116 NTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSN 195 (464)
Q Consensus 116 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~ 195 (464)
.||||+|+..|+.+++++|++.+++ .+..+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++
T Consensus 74 ~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~ 151 (231)
T 3aji_A 74 WSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGN 151 (231)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred CCHHHHHHHcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCC
Confidence 8888888888888888888888877 4566777888888888888888888888877765 6666777777777777777
Q ss_pred HHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCC
Q 038664 196 FVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYP 275 (464)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 275 (464)
.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++. .++..|.||+++|+..++.+++++|+++++
T Consensus 152 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 152 LKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY-IENKEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp HHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence 7777777777665 66667777777777777777777777777777665 566777777777777777777777776654
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.6e-38 Score=277.64 Aligned_cols=219 Identities=22% Similarity=0.322 Sum_probs=147.4
Q ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHH
Q 038664 145 INKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYA 224 (464)
Q Consensus 145 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a 224 (464)
.+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|
T Consensus 7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 84 (237)
T 3b7b_A 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLA 84 (237)
T ss_dssp SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTTSCCHHHHH
T ss_pred ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHH
Confidence 3444555555555555555555555554443 44445555555555555555555555555544 455566666777777
Q ss_pred HHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHH
Q 038664 225 AALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFI 304 (464)
Q Consensus 225 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L 304 (464)
+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++++++ ++.++..|.||||+|+..|+.+++++|
T Consensus 85 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~L 163 (237)
T 3b7b_A 85 AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEIL 163 (237)
T ss_dssp HHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 7777777777777666333335666677777777777777777777777766 477777788888888888888888888
Q ss_pred hcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhH
Q 038664 305 SKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND 370 (464)
Q Consensus 305 ~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~ 370 (464)
++. +.+++.+|..|+||||+|++.++.+++++|+++ |+|++.+|..|+||+++|...++...
T Consensus 164 l~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~~~~~ 225 (237)
T 3b7b_A 164 LAA---KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWS 225 (237)
T ss_dssp HTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred HHc---CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHHHHHHHH
Confidence 776 567777788888888888888888888888865 88888888888888888887766543
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2e-38 Score=278.13 Aligned_cols=223 Identities=21% Similarity=0.250 Sum_probs=151.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHH
Q 038664 113 EEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAII 192 (464)
Q Consensus 113 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~ 192 (464)
..+.+|||.|+..|+.+.++.|++.++......+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+.
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 82 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAAS 82 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHH
Confidence 456778888888888888888887777666667777777777777777777777777777665 6666667777777777
Q ss_pred cCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHH
Q 038664 193 KSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLH 272 (464)
Q Consensus 193 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 272 (464)
.++.+++++|++.+.+ ++..+..|.||||+|+..++.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++
T Consensus 83 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 160 (231)
T 3aji_A 83 AGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILLF 160 (231)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 7777777777776665 56666666677777776666666666666666655 455566666666666666666666666
Q ss_pred HCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHh
Q 038664 273 SYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILAR 342 (464)
Q Consensus 273 ~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~ 342 (464)
.+.+ ++.+|..|+||||+|+..++.+++++|++. +++++.+|..|.||||+|+..++.+++++|++
T Consensus 161 ~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~ 226 (231)
T 3aji_A 161 YKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQ---GASIYIENKEEKTPLQVAKGGLGLILKRLAEG 226 (231)
T ss_dssp TTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred cCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence 6555 355666666666666666666666666655 45556666666666666666666666666654
No 26
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=7.1e-39 Score=282.95 Aligned_cols=221 Identities=22% Similarity=0.272 Sum_probs=126.1
Q ss_pred hhcCCCCCcHHHHHHHcCCHHHHHHHHH----hCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCC
Q 038664 109 RKQDEEGNTPLHNAVRKCDGKMAFTMIR----KDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDL 184 (464)
Q Consensus 109 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~ 184 (464)
+.+|.+|.||||+|+..|+.+++++|++ .+.+ .+..+..|.||||+|+..|+.+++++|++.+.++ +..+..|.
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~ 80 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQ 80 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCC
Confidence 3556667777777777777777766665 2333 3445555666666666666666666666655554 44455555
Q ss_pred CHHHHHHHcCCHHHHHHHHHhCch---hhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccC
Q 038664 185 TLLHIAIIKSNFVVMAKILEAKRD---LINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASEN 261 (464)
Q Consensus 185 ~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 261 (464)
||||+|+..++.+++++|++.++. .++. .+..|.||||+|+..
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~----------------------------------~~~~g~t~L~~A~~~ 126 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEA----------------------------------RNYDGLTALHVAVNT 126 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTC----------------------------------CCTTSCCHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccc----------------------------------cCcCCCcHHHHHHHc
Confidence 555555555555555555555431 1333 444455555555555
Q ss_pred CcHHHHHHHHHHCCCcccccc-cCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHH
Q 038664 262 GKLSLLKRLLHSYPDSIEFLD-KKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLIL 340 (464)
Q Consensus 262 g~~~~v~~Ll~~~~~~~~~~d-~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L 340 (464)
|+.+++++|++.+++. +..+ ..|.||||+|+..|+.+++++|++. +.+++.+|..|+||||+|++.|+.+++++|
T Consensus 127 ~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 202 (241)
T 1k1a_A 127 ECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGLLPLVRTL 202 (241)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 5555555555555542 4444 5566666666666666666666655 455666666666666666666666666666
Q ss_pred HhccccccccccccCCChHHhhccCchhhH
Q 038664 341 ARNMRVNIRATNEKKQTALAIVQPSLHQND 370 (464)
Q Consensus 341 l~~~~~d~~~~n~~g~t~l~~a~~~~~~~~ 370 (464)
+++ |+|++.+|..|+||+++|...++.+.
T Consensus 203 l~~-ga~~~~~~~~g~tpl~~A~~~~~~~i 231 (241)
T 1k1a_A 203 VRS-GADSSLKNCHNDTPLMVARSRRVIDI 231 (241)
T ss_dssp HHT-TCCTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred Hhc-CCCCCCcCCCCCCHHHHHHhcCcHHH
Confidence 654 66666666666666666665555444
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=7e-38 Score=274.07 Aligned_cols=217 Identities=20% Similarity=0.234 Sum_probs=171.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhC--chhhhh-hcCCCCcHHHHHH
Q 038664 149 GQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAK--RDLINV-LDKRDRNPLHYAA 225 (464)
Q Consensus 149 g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~-~~~~g~t~L~~a~ 225 (464)
|.||||.|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|++.+ .+ ++. .+..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-LDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC-GGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc-ccccCCCCCCCHHHHHH
Confidence 4555666666666666666665555544445666666666666666666666666666 33 333 6778889999999
Q ss_pred HcCCHHHHHHHhhcC--CCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHH
Q 038664 226 ALGHFEIACRLSDED--DTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVF 303 (464)
Q Consensus 226 ~~~~~~~v~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~ 303 (464)
..|+.+++++|++.+ .+.. ..+..|.||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIEL 158 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999887 5555 5778899999999999999999999999888 58899999999999999999999999
Q ss_pred HhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhH
Q 038664 304 ISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND 370 (464)
Q Consensus 304 L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~ 370 (464)
|++.+ ..+++.+|..|+||||+|+..|+.+++++|+++.|+|++.+|.+|+||+++|.+.+..+.
T Consensus 159 Ll~~g--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~~~~~ 223 (228)
T 2dzn_A 159 LCGLG--KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF 223 (228)
T ss_dssp HHTTT--CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTTHHHH
T ss_pred HHhcC--cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHHHHHH
Confidence 99873 177899999999999999999999999999955699999999999999999986544433
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.6e-37 Score=271.73 Aligned_cols=214 Identities=21% Similarity=0.254 Sum_probs=165.2
Q ss_pred CCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhh-cCCCCC
Q 038664 38 RDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRK-QDEEGN 116 (464)
Q Consensus 38 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~-~~~~g~ 116 (464)
|+||||+|+..|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|++.+++.. +.. .+..|.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--------~~~~~~~~g~ 73 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN--------LDDYPDDSGW 73 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC--------GGGCCCTTSC
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc--------ccccCCCCCC
Confidence 67999999999999999999999988777788999999999999999999999999885544 334 778888
Q ss_pred cHHHHHHHcCCHHHHHHHHHhC--CccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcC
Q 038664 117 TPLHNAVRKCDGKMAFTMIRKD--PELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKS 194 (464)
Q Consensus 117 t~L~~A~~~~~~~~~~~Ll~~~--~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~ 194 (464)
||||+|+..|+.+++++|++.+ ++ .+..+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..+
T Consensus 74 t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 151 (228)
T 2dzn_A 74 TPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVG 151 (228)
T ss_dssp CHHHHHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTT
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcC
Confidence 9999998888888888888887 44 4566777888888888888888888888777765 666677777777777777
Q ss_pred CHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHh-hcCCCccccccCCCCCcccccccCC
Q 038664 195 NFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLS-DEDDTLAYERDCNGQSPLHLASENG 262 (464)
Q Consensus 195 ~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll-~~~~~~~~~~~~~g~tpL~~A~~~g 262 (464)
+.+++++|++.++..++..|..|+||||+|+..|+.+++++|+ +.|+++. .+|..|.||+++|+..+
T Consensus 152 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~-~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD-LVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp CHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC-CBCTTSCBGGGGCSSTT
T ss_pred CHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC-ccCCCCCcHHHHHHHHH
Confidence 7777777777763336666777777777777777777777777 6666665 46667777777776553
No 29
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.2e-37 Score=281.42 Aligned_cols=239 Identities=16% Similarity=0.150 Sum_probs=215.3
Q ss_pred HHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHH
Q 038664 11 ALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKI 90 (464)
Q Consensus 11 A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 90 (464)
+++..+.+.++++|... +++..|..|.||||+|+..|+.++|++|++.|++ ++.. +|.||||+|+..|+.+++++
T Consensus 6 ~i~~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~--~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL--ENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp TGGGCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC--TTCCHHHHHTTSSSCHHHHH
T ss_pred HHHhcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC--CCCCHHHHHHHcCCHHHHHH
Confidence 46788899999999876 6788999999999999999999999999999988 5545 59999999999999999999
Q ss_pred HhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCC-CcHHHHHHHcCCHHHHHHHH
Q 038664 91 FMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAG-QSPLSLAIDAGLTHIACCII 169 (464)
Q Consensus 91 Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~A~~~g~~~~~~~Ll 169 (464)
|++++++. +.++..|.||||+|+..|+.+++++|++.+++ ++..+..| .||||+|+..|+.+++++|+
T Consensus 81 Ll~~ga~~----------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll 149 (285)
T 3kea_A 81 LLFSGLDD----------SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149 (285)
T ss_dssp HHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCCC----------CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999884 47889999999999999999999999999988 46778888 89999999999999999999
Q ss_pred HhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcH-HHHHHHcCCHHHHHHHhhcCCCcccccc
Q 038664 170 KEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNP-LHYAAALGHFEIACRLSDEDDTLAYERD 248 (464)
Q Consensus 170 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~-L~~a~~~~~~~~v~~Ll~~~~~~~~~~~ 248 (464)
+++.+..+. ..|.||||+|+..++.+++++|++.+.+ ++..+..|.|| ||+|+..|+.+++++|+++|++++. .+
T Consensus 150 ~~g~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~-~~ 225 (285)
T 3kea_A 150 SEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS-AN 225 (285)
T ss_dssp TTSCTTCCC--STHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTT-TT
T ss_pred hCCCccccc--cCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC-CC
Confidence 998865222 2789999999999999999999999887 89999999998 9999999999999999999998873 33
Q ss_pred CCCCCcccccccCCcHHHHHHHHHHCCC
Q 038664 249 CNGQSPLHLASENGKLSLLKRLLHSYPD 276 (464)
Q Consensus 249 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 276 (464)
+.|+..|+.+++++|+++|.+
T Consensus 226 -------~~a~~~~~~~iv~~Ll~~g~~ 246 (285)
T 3kea_A 226 -------LENVLLDDAEIAKMIIEKHVE 246 (285)
T ss_dssp -------GGGGTTTCHHHHHHHHHHHHH
T ss_pred -------hhhhhcCCHHHHHHHHHcCCC
Confidence 477889999999999999876
No 30
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=283.00 Aligned_cols=225 Identities=17% Similarity=0.171 Sum_probs=138.9
Q ss_pred ccCCCCchhHHHHhcCCHHHHHHHHHhCCcc-------ccccccCCCCHHHHHHHhCCH-HHHHHHhcccCCCCCCcchH
Q 038664 34 MSQNRDTALHIAARFGHKNVVMEILELRPDL-------VSVENHKSETPMHVAARAGNF-GVAKIFMRPHGNGNNTGTFD 105 (464)
Q Consensus 34 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-------~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~ 105 (464)
.|..+.++|+.||..|+.++|++|++.+++. ++..+..|.|||+.|+..++. +++++|++.|++.
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv------- 79 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV------- 79 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-------
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-------
Confidence 4555667888888888888888888877653 344566677888887776654 4677777777763
Q ss_pred HHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCC
Q 038664 106 DILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLT 185 (464)
Q Consensus 106 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~ 185 (464)
+.+|.+|.||||+|+..|+.+++++|++.+++ ....+..|.||++.|+..++.+++++|++.+.++ +..+..|.|
T Consensus 80 ---n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~T 154 (269)
T 4b93_B 80 ---NVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNT 154 (269)
T ss_dssp ---TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCC
T ss_pred ---CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCC
Confidence 36677777888888887777788877777776 3566677777777777777777777777777766 666777777
Q ss_pred HHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCc-H
Q 038664 186 LLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGK-L 264 (464)
Q Consensus 186 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~ 264 (464)
|||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+++++ .
T Consensus 155 pL~~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~-~~d~~G~TpL~~A~~~~~i~ 232 (269)
T 4b93_B 155 PLIYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ-VLNKRQRTAVDCAEQNSKIM 232 (269)
T ss_dssp HHHHHHHTTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCSGGGSCTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHhCCcHH
Confidence 77777777777777777777766 67777777777777777777777777777777666 567777777777776665 3
Q ss_pred HHHHHHHH
Q 038664 265 SLLKRLLH 272 (464)
Q Consensus 265 ~~v~~Ll~ 272 (464)
++++.|..
T Consensus 233 ~lL~~l~~ 240 (269)
T 4b93_B 233 ELLQVVPS 240 (269)
T ss_dssp HHTTC---
T ss_pred HHHHHHHH
Confidence 44444433
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.3e-39 Score=285.89 Aligned_cols=230 Identities=19% Similarity=0.283 Sum_probs=162.8
Q ss_pred ccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCH-HHHHHHHHhCCcccccc
Q 038664 67 VENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDG-KMAFTMIRKDPELICYI 145 (464)
Q Consensus 67 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~~~~~~~~~ 145 (464)
.+|..+.+||+.||..|+.++|++|++.++..... ....++..+..+.|||++|+..+.. .+++.|++.|++ ++..
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~--~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-vn~~ 82 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED--AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-VNVT 82 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------CCCC-TTCC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc--ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-CCCc
Confidence 46777889999999999999999999988764311 1223556778889999999887765 478888888888 4677
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHH
Q 038664 146 NKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAA 225 (464)
Q Consensus 146 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~ 225 (464)
|.+|.||||+|+..|+.+++++|++.+.++ +..+..|.||++.|+..++.++++.|++.+.+ ++..|..|+||||+|+
T Consensus 83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~ 160 (269)
T 4b93_B 83 SQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYAC 160 (269)
T ss_dssp CTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH
Confidence 888999999999999999999999988887 77788888999999988888988888888877 7888888888888888
Q ss_pred HcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHh
Q 038664 226 ALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFIS 305 (464)
Q Consensus 226 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~ 305 (464)
..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+++++ ++++|.
T Consensus 161 ~~g~~~~v~~Ll~~gadvn-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~--i~~lL~ 236 (269)
T 4b93_B 161 SGGHHELVALLLQHGASIN-ASNNKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSK--IMELLQ 236 (269)
T ss_dssp HTTCGGGHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCH--HHHHTT
T ss_pred HCCCHHHHHHHHHCCCCCC-ccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCc--HHHHHH
Confidence 8888888888888888877 5788888888888888888888888888887 48888888888888887664 444443
No 32
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.1e-38 Score=286.81 Aligned_cols=264 Identities=21% Similarity=0.242 Sum_probs=182.5
Q ss_pred HHHHcCCHHHHHHHHhhcCCCcc---------cccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHH
Q 038664 10 RALRRGDAATVRESARLNGNGIL---------DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAA 80 (464)
Q Consensus 10 ~A~~~g~~~~~~~ll~~~~~~~~---------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 80 (464)
.+++.+..+.++.++.... ++. ..+..|.||||.||..|+.++|++|++.|++ ++..+..|.||||+|+
T Consensus 4 ~~a~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~ 81 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSET-DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQAC 81 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTT-SSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccc-ccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence 4677778888888887554 211 2234567888888888888888888888887 6777888888888888
Q ss_pred HhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcC
Q 038664 81 RAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAG 160 (464)
Q Consensus 81 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g 160 (464)
..|+.+++++|++++++. +..+..|.||||+|+..|+.+++++|++.+++ ++..+..|.|||++|+..+
T Consensus 82 ~~g~~~~v~~Ll~~ga~~----------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~ 150 (299)
T 1s70_B 82 IDDNVDMVKFLVENGANI----------NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEA 150 (299)
T ss_dssp HTTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHH
T ss_pred HcCCHHHHHHHHHCCCCC----------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcc
Confidence 888888888888877763 35667777777777777777777777777666 3445556666666666555
Q ss_pred CHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcC
Q 038664 161 LTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDED 240 (464)
Q Consensus 161 ~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~ 240 (464)
+.+++++++.... ..++..+..+.++++
T Consensus 151 ~~~~~~~ll~~~~----------------------------------~~~~~~~~~~~~~~~------------------ 178 (299)
T 1s70_B 151 MEELLQNEVNRQG----------------------------------VDIEAARKEEERIML------------------ 178 (299)
T ss_dssp HHHHHHHHHHHHT----------------------------------CCHHHHHHHHHHHHH------------------
T ss_pred hHHHHHHHHhhcC----------------------------------CCchhhhhhhhhHHH------------------
Confidence 5555555544322 111111111111111
Q ss_pred CCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCC
Q 038664 241 DTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLE 320 (464)
Q Consensus 241 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~ 320 (464)
..++.++..+.......+..|.||||+|+..|+.+++++|++. +++++.+|..
T Consensus 179 ------------------------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~d~~~~d~~ 231 (299)
T 1s70_B 179 ------------------------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RYDVNIKDYD 231 (299)
T ss_dssp ------------------------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT---TCCTTCCCTT
T ss_pred ------------------------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc---CCCCCCcCCC
Confidence 1223344444443445566788888888888888888888876 6778888888
Q ss_pred CCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCc
Q 038664 321 GNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSL 366 (464)
Q Consensus 321 g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~ 366 (464)
|+||||+|+..|+.+++++|+++ |+|++.+|..|+||+++|.+..
T Consensus 232 g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~ 276 (299)
T 1s70_B 232 GWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADEDI 276 (299)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTTTSCCSGG
T ss_pred CCcHHHHHHhcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHHH
Confidence 88888888888888888888876 8888888888888888887543
No 33
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=267.59 Aligned_cols=230 Identities=21% Similarity=0.275 Sum_probs=139.9
Q ss_pred ccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhc
Q 038664 32 LDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQ 111 (464)
Q Consensus 32 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 111 (464)
+..+..|.|+||.|+..|+.+++++|++.|.+ ++..+..|.||||+|+..|+.+++++|++.+.+.. ...
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---------~~~ 72 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD---------QLG 72 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------CCB
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch---------hhc
Confidence 34566777888888888888888888888877 66677778888888888888888888887776543 123
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHH
Q 038664 112 DEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAI 191 (464)
Q Consensus 112 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~ 191 (464)
+..|.||||+|+..|+.+++++|++.+++ ....+..|.|||+.|+..|+.+++++|++++.++ +..+..|.||||+|+
T Consensus 73 ~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~ 150 (240)
T 3eu9_A 73 GDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAA 150 (240)
T ss_dssp TTTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCcCCChhHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHH
Confidence 44467777777777777777777777666 3445566666666666666666666666655554 445555555555555
Q ss_pred HcCC-HHHHHHHHHhCchhhhhhcC-CCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHH
Q 038664 192 IKSN-FVVMAKILEAKRDLINVLDK-RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKR 269 (464)
Q Consensus 192 ~~~~-~~~~~~ll~~~~~~~~~~~~-~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 269 (464)
..++ .++++.|++.+.+ ++..+. .|.||||+|+..|+.+++++|+++|+++. .++..|.|||++|++.|+.+++++
T Consensus 151 ~~~~~~~~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~v~~ 228 (240)
T 3eu9_A 151 YRTHSVDPTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD-AQNIKGESALDLAKQRKNVWMINH 228 (240)
T ss_dssp HHCCSSTTHHHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred HhCChHHHHHHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHH
Confidence 3333 4444444444444 333333 44455555555555555555555544443 344444455555555555555555
Q ss_pred HHHHCC
Q 038664 270 LLHSYP 275 (464)
Q Consensus 270 Ll~~~~ 275 (464)
|++.+.
T Consensus 229 L~~~~~ 234 (240)
T 3eu9_A 229 LQEARQ 234 (240)
T ss_dssp HHHHC-
T ss_pred HHHhhh
Confidence 544443
No 34
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-37 Score=283.67 Aligned_cols=220 Identities=21% Similarity=0.228 Sum_probs=155.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcC
Q 038664 149 GQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALG 228 (464)
Q Consensus 149 g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~ 228 (464)
+.|||+.|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|
T Consensus 40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g 117 (299)
T 1s70_B 40 DGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCG 117 (299)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcC
Confidence 344444444444444444444444443 44445555555555555566666666665555 5666777888888888888
Q ss_pred CHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCc
Q 038664 229 HFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLP 308 (464)
Q Consensus 229 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~ 308 (464)
+.+++++|+++|+++. ..+..|.||||+|+..++.++++.++......++..+..+.++++..+ ..++...
T Consensus 118 ~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~- 188 (299)
T 1s70_B 118 YLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA-------RQWLNSG- 188 (299)
T ss_dssp CHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH-------HHHHHHT-
T ss_pred CHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHH-------HHHHhcc-
Confidence 8888888888888776 578889999999999999999998887765555655555555554332 2233222
Q ss_pred chhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhH--HHhhcCCCCCCC
Q 038664 309 EIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND--ILEGHGGSASGT 382 (464)
Q Consensus 309 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~--~l~~~g~~~~~~ 382 (464)
.......+..|.||||+|+..|+.+++++|++. |++++.+|..|.|||++|...++.+. +|..+|+++...
T Consensus 189 --~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~ 261 (299)
T 1s70_B 189 --HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV 261 (299)
T ss_dssp --CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred --CcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCc
Confidence 222345678899999999999999999999975 99999999999999999998888765 477889887543
No 35
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.5e-36 Score=265.40 Aligned_cols=228 Identities=17% Similarity=0.182 Sum_probs=161.2
Q ss_pred ccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccc
Q 038664 67 VENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYIN 146 (464)
Q Consensus 67 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~ 146 (464)
..|..|.|||+.|+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.++......+
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 73 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDV----------RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG 73 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBT
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCc----------CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcC
Confidence 45677888888888888888888888887763 36677888888888888888888888888887665666
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHH
Q 038664 147 KAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAA 226 (464)
Q Consensus 147 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~ 226 (464)
..|.|||++|+..|+.+++++|++.+.++ +..+..|.+|||.|+..++.+++++|++.+.+ ++..+..|.||||+|+.
T Consensus 74 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~ 151 (240)
T 3eu9_A 74 DLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAY 151 (240)
T ss_dssp TTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred CcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHH
Confidence 66788888888888888888888877766 66667777777777777777777777777665 56667777777777775
Q ss_pred cCC-HHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHh
Q 038664 227 LGH-FEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFIS 305 (464)
Q Consensus 227 ~~~-~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~ 305 (464)
.++ .+++++|++.+.+........|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|++.|+.+++++|+
T Consensus 152 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVWMINHLQ 230 (240)
T ss_dssp HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 554 56666666666665532223566666666666666666666666555 3555556666666666666666666655
Q ss_pred cC
Q 038664 306 KL 307 (464)
Q Consensus 306 ~~ 307 (464)
+.
T Consensus 231 ~~ 232 (240)
T 3eu9_A 231 EA 232 (240)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.2e-36 Score=265.31 Aligned_cols=214 Identities=22% Similarity=0.329 Sum_probs=116.1
Q ss_pred CCHHHHHHHHhhcCCCcc-cccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhc
Q 038664 15 GDAATVRESARLNGNGIL-DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMR 93 (464)
Q Consensus 15 g~~~~~~~ll~~~~~~~~-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 93 (464)
|+.+.++.+++.+. +++ ..+..|.||||+|+..|+.+++++|++++++ ++..+..|.||||+|+..|+.+++++|++
T Consensus 2 g~~~~i~~Ll~~g~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 2 DAPAVISDFIYQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp ---CCEETTEETTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHcCC-CcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 34444544444333 443 3355566666666666666666666666555 45555666666666666666666666665
Q ss_pred ccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 038664 94 PHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKL 173 (464)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~ 173 (464)
.++.. ++..+..|.||||+|+..++.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++++.
T Consensus 80 ~~~~~---------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 149 (223)
T 2f8y_A 80 NRATD---------LDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 149 (223)
T ss_dssp BTTSC---------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCCC---------cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 55421 234455566666666666666666666665555 33445555555555555555555555555555
Q ss_pred cCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCC
Q 038664 174 SVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDT 242 (464)
Q Consensus 174 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~ 242 (464)
++ +..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||+++|++.++.+++++|+++|..
T Consensus 150 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 150 NK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp CT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred CC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 44 44455555555555555555555555555544 444555555555555555555555555555443
No 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.5e-36 Score=274.23 Aligned_cols=237 Identities=16% Similarity=0.127 Sum_probs=207.7
Q ss_pred HhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHH
Q 038664 108 LRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLL 187 (464)
Q Consensus 108 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l 187 (464)
++.+|..|.||||+|+..|+.+++++|++.++++. .. +|.||||+|+..|+.+++++|++++.++ +..+..|.|||
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L 99 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTAL 99 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS-CC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHH
Confidence 34789999999999999999999999999998853 33 5899999999999999999999999987 88899999999
Q ss_pred HHHHHcCCHHHHHHHHHhCchhhhhhcCCC-CcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHH
Q 038664 188 HIAIIKSNFVVMAKILEAKRDLINVLDKRD-RNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSL 266 (464)
Q Consensus 188 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g-~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 266 (464)
|+|+..|+.+++++|++.+.+ ++..+..| .||||+|+..|+.+++++|++++++... ...|.||||+|+..|+.++
T Consensus 100 ~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 100 YYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp HHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHH
Confidence 999999999999999999888 88899999 7999999999999999999999987642 2378999999999999999
Q ss_pred HHHHHHHCCCcccccccCCCch-hHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccc
Q 038664 267 LKRLLHSYPDSIEFLDKKNRNI-LHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMR 345 (464)
Q Consensus 267 v~~Ll~~~~~~~~~~d~~g~t~-L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~ 345 (464)
+++|+++|++ ++.+|..|+|| ||+|+..++.+++++|++. |++++.+| +.|+..|+.+++++|+++ |
T Consensus 177 v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~---gad~~~~~-------~~a~~~~~~~iv~~Ll~~-g 244 (285)
T 3kea_A 177 MILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKY---DINIYSAN-------LENVLLDDAEIAKMIIEK-H 244 (285)
T ss_dssp HHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS---CBCSTTTT-------GGGGTTTCHHHHHHHHHH-H
T ss_pred HHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHc---CCCCCCCC-------hhhhhcCCHHHHHHHHHc-C
Confidence 9999999888 59999999998 9999999999999999988 67788777 366789999999999976 8
Q ss_pred cccccccccCCChHHhhccC
Q 038664 346 VNIRATNEKKQTALAIVQPS 365 (464)
Q Consensus 346 ~d~~~~n~~g~t~l~~a~~~ 365 (464)
++++.... ...++++...
T Consensus 245 ~~~~~~~~--~~~~~~~~~~ 262 (285)
T 3kea_A 245 VEYKSDSY--TKDLDIVKNN 262 (285)
T ss_dssp HHHTTCTT--TTTCHHHHTC
T ss_pred CCCCCccc--cchHHHHhhh
Confidence 88775543 3445555533
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.7e-36 Score=264.24 Aligned_cols=215 Identities=18% Similarity=0.176 Sum_probs=187.5
Q ss_pred CCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 038664 126 CDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEA 205 (464)
Q Consensus 126 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~ 205 (464)
|+.+++++|++.++++....+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++.
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 56778888888888877677888999999999999999999999988876 77888899999999999999999999998
Q ss_pred CchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCC
Q 038664 206 KRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKN 285 (464)
Q Consensus 206 ~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g 285 (464)
++..++..+..|.||||+|+..++.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++++++ ++.+|..|
T Consensus 81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g 158 (223)
T 2f8y_A 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNRE 158 (223)
T ss_dssp TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTC
T ss_pred CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCC
Confidence 876678888899999999999999999999999988877 5788899999999999999999999999887 48888999
Q ss_pred CchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccc
Q 038664 286 RNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVN 347 (464)
Q Consensus 286 ~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d 347 (464)
+||||+|+..++.+++++|++. +++++.+|..|.||||+|++.++.+++++|++. |+.
T Consensus 159 ~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~-g~~ 216 (223)
T 2f8y_A 159 ETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHHDIVRLLDEY-NLV 216 (223)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCS
T ss_pred cCHHHHHHHcCCHHHHHHHHHc---CCCCccccccCCCHHHHHHHhcchHHHHHHHHc-CCC
Confidence 9999999999999999999887 677888899999999999999999999999975 664
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=5.4e-38 Score=289.27 Aligned_cols=253 Identities=13% Similarity=0.014 Sum_probs=164.6
Q ss_pred CCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc----------------cc
Q 038664 83 GNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICY----------------IN 146 (464)
Q Consensus 83 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~----------------~~ 146 (464)
...+++++|+++|++ ++..+..|.|+++ |+.++++.|+++|.+.... ..
T Consensus 30 ~~~dlv~~ll~~ga~----------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~ 94 (327)
T 1sw6_A 30 FTHDLTSDFLSSPLK----------IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGG 94 (327)
T ss_dssp CCTTCCCSTTTSSCC----------CEECBCCCCCCCH-----HHHHHHHHHHHHHHC----------------------
T ss_pred hcCchHHHHhhCCcc----------cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhccccccccccc
Confidence 334555666665555 2345555666655 5566666666655332110 00
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCC-CCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHH
Q 038664 147 KAGQSPLSLAIDAGLTHIACCIIKEKLSVLDH-RGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAA 225 (464)
Q Consensus 147 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~ 225 (464)
....+..+.++..+..++++.|++.+.++ +. .+..|.||||+|+..|+.+++++|++++++ ++..|.+|+||||+|+
T Consensus 95 ~~~~~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~ 172 (327)
T 1sw6_A 95 SSNQQQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAV 172 (327)
T ss_dssp ---------CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHH
T ss_pred CCccchhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence 11112235566666666777777766666 55 677777777777777777777777777766 6677777777777777
Q ss_pred HcCC---HHHHHHHhhcCCCccccccCCCCCccccccc----CCcHHHHHHHHHH--------------------CCCcc
Q 038664 226 ALGH---FEIACRLSDEDDTLAYERDCNGQSPLHLASE----NGKLSLLKRLLHS--------------------YPDSI 278 (464)
Q Consensus 226 ~~~~---~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~----~g~~~~v~~Ll~~--------------------~~~~~ 278 (464)
..|+ .++++.|++.+......++..|+||||+|+. .|+.+++++|++. +.+ +
T Consensus 173 ~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~ 251 (327)
T 1sw6_A 173 KSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-P 251 (327)
T ss_dssp HSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------
T ss_pred HhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-c
Confidence 7776 5666666666533233567777777777776 6777777777766 555 5
Q ss_pred cccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCCh
Q 038664 279 EFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTA 358 (464)
Q Consensus 279 ~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~ 358 (464)
+..+..|+||||+|+. +++|++. ++|.+|..|+||||+|++.|+.+++++|+++ |+|++.+|..|+||
T Consensus 252 ~~~~~~g~t~L~~a~~------~~~Ll~~-----~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~Tp 319 (327)
T 1sw6_A 252 NDKNGERKDSILENLD------LKWIIAN-----MLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRP 319 (327)
T ss_dssp --------CHHHHHCS------HHHHHHH-----TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCG
T ss_pred ccccccCCChhHHHHH------HHHHHHh-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCH
Confidence 8899999999999996 7888765 4899999999999999999999999999976 99999999999999
Q ss_pred HHhhccC
Q 038664 359 LAIVQPS 365 (464)
Q Consensus 359 l~~a~~~ 365 (464)
|++|.+.
T Consensus 320 L~~A~~~ 326 (327)
T 1sw6_A 320 VDFGAGL 326 (327)
T ss_dssp GGGTCC-
T ss_pred HHHHHhc
Confidence 9999864
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=8.5e-38 Score=287.98 Aligned_cols=272 Identities=11% Similarity=0.043 Sum_probs=209.8
Q ss_pred CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHh-------
Q 038664 37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILR------- 109 (464)
Q Consensus 37 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~------- 109 (464)
...+|+| ....++|++|+++|++ ++..+..|.|+++ |+.+++++|+++|.++...........
T Consensus 22 ~~~~~~~----~~~~dlv~~ll~~ga~-i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~ 91 (327)
T 1sw6_A 22 RTAGPII----TFTHDLTSDFLSSPLK-IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNS 91 (327)
T ss_dssp ---CCEE----ECCTTCCCSTTTSSCC-CEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------
T ss_pred ccccchh----hhcCchHHHHhhCCcc-cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccc
Confidence 4456666 4566789999999998 7778899999987 899999999999877542111000000
Q ss_pred hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHH
Q 038664 110 KQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHI 189 (464)
Q Consensus 110 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~ 189 (464)
.......+.+|.|+..+..+++++|++.+.++....+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+
T Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~ 170 (327)
T 1sw6_A 92 EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVK 170 (327)
T ss_dssp ------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHH
T ss_pred cccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHH
Confidence 011122334588888888899999999998854338999999999999999999999999999988 8999999999999
Q ss_pred HHHcCC---HHHHHHHHHhCchhhhhhcCCCCcHHHHHHH----cCCHHHHHHHhhc--------------------CCC
Q 038664 190 AIIKSN---FVVMAKILEAKRDLINVLDKRDRNPLHYAAA----LGHFEIACRLSDE--------------------DDT 242 (464)
Q Consensus 190 a~~~~~---~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~----~~~~~~v~~Ll~~--------------------~~~ 242 (464)
|+..|+ .++++.|++.+...++..|..|+||||+|++ .|+.+++++|++. +++
T Consensus 171 A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~ 250 (327)
T 1sw6_A 171 AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250 (327)
T ss_dssp HHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------
T ss_pred HHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC
Confidence 999998 6888888888755689999999999999999 8999999999987 566
Q ss_pred ccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCC
Q 038664 243 LAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGN 322 (464)
Q Consensus 243 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~ 322 (464)
++ .++..|.||||.|+. +++|+++ + ++.+|..|+||||+|+++|+.+++++|++. |++++.+|..|+
T Consensus 251 ~~-~~~~~g~t~L~~a~~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---Gad~~~~d~~G~ 317 (327)
T 1sw6_A 251 PN-DKNGERKDSILENLD------LKWIIAN--M-LNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGL 317 (327)
T ss_dssp ----------CHHHHHCS------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTSC
T ss_pred cc-cccccCCChhHHHHH------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCC
Confidence 66 678899999999996 8999998 3 688999999999999999999999999988 789999999999
Q ss_pred cHHHHHHHcC
Q 038664 323 TPLHLAAINN 332 (464)
Q Consensus 323 t~Lh~A~~~~ 332 (464)
||||+|+++|
T Consensus 318 TpL~~A~~~g 327 (327)
T 1sw6_A 318 RPVDFGAGLE 327 (327)
T ss_dssp CGGGGTCC--
T ss_pred CHHHHHHhcC
Confidence 9999998764
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=3.2e-35 Score=258.48 Aligned_cols=221 Identities=19% Similarity=0.260 Sum_probs=150.0
Q ss_pred cccCCCCchhHHHHhcCCHHHHHHHHHhCCc---cccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHh
Q 038664 33 DMSQNRDTALHIAARFGHKNVVMEILELRPD---LVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILR 109 (464)
Q Consensus 33 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~ 109 (464)
.+|.+|+||||+|+..|+.+++++|++.++. .++..+..|.||||+|+..|+.+++++|++++++.+
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------- 72 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE---------- 72 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC----------
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------
Confidence 4677888999999999999988888887663 367788888999999999999999999998887744
Q ss_pred hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHH
Q 038664 110 KQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHI 189 (464)
Q Consensus 110 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~ 189 (464)
.++..|.||||+|+..|+.+++++|++.++.... ....+..+..|.||||+
T Consensus 73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----------------------------~~~~~~~~~~g~t~L~~ 123 (236)
T 1ikn_D 73 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL-----------------------------HSILKATNYNGHTCLHL 123 (236)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSS-----------------------------SCGGGCCCTTCCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhH-----------------------------HHHhhccCCCCCCHHHH
Confidence 6777888888888888888888888887754200 00113344455556666
Q ss_pred HHHcCCHHHHHHHHHhCchhhhhhcC-CCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHH
Q 038664 190 AIIKSNFVVMAKILEAKRDLINVLDK-RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLK 268 (464)
Q Consensus 190 a~~~~~~~~~~~ll~~~~~~~~~~~~-~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 268 (464)
|+..++.+++++|++.+.+ ++..+. .|.||||+|+..|+.+++++|+++|+++. .++..|.||||+|+..|+.++++
T Consensus 124 A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~~~ 201 (236)
T 1ikn_D 124 ASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-RVTYQGYSPYQLTWGRPSTRIQQ 201 (236)
T ss_dssp HHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC-CCCTTCCCGGGGCTTSSCHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccCCCCCHHHHHHccCchHHHH
Confidence 6666666666666666555 455554 67777777777777777777777776665 46667777777777777777777
Q ss_pred HHHHHCCCcc-cccccCCCchhHHHHh
Q 038664 269 RLLHSYPDSI-EFLDKKNRNILHLAAQ 294 (464)
Q Consensus 269 ~Ll~~~~~~~-~~~d~~g~t~L~~A~~ 294 (464)
+|+++|++.. ...+..|.|+.+.+..
T Consensus 202 ~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 202 QLGQLTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp HHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred HHHHcchhhhhcCCccchHHHHhhhcc
Confidence 7777776542 2456666666655443
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=8.8e-35 Score=255.65 Aligned_cols=227 Identities=16% Similarity=0.167 Sum_probs=171.7
Q ss_pred ccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccc
Q 038664 67 VENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYIN 146 (464)
Q Consensus 67 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~ 146 (464)
..|.+|.||||+|+..|+.+++++|++.+.... ..++..+..|.||||+|+..|+.+++++|++.+++ ++..+
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~ 75 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL------AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRD 75 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----C------CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCC
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccH------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcC
Confidence 467788888888888888888888887765320 01345677778888888888888888877777766 34566
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHH
Q 038664 147 KAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAA 226 (464)
Q Consensus 147 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~ 226 (464)
..|.||||+|+..|+.+++++|++.+... .. ...++..+..|.||||+|+.
T Consensus 76 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~----------------------------~~~~~~~~~~g~t~L~~A~~ 126 (236)
T 1ikn_D 76 FRGNTPLHLACEQGCLASVGVLTQSCTTP-HL----------------------------HSILKATNYNGHTCLHLASI 126 (236)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHSTTTT-SS----------------------------SCGGGCCCTTCCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcccch-hH----------------------------HHHhhccCCCCCCHHHHHHH
Confidence 66777777777777777777776655432 10 12256778899999999999
Q ss_pred cCCHHHHHHHhhcCCCccccccC-CCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHh
Q 038664 227 LGHFEIACRLSDEDDTLAYERDC-NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFIS 305 (464)
Q Consensus 227 ~~~~~~v~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~ 305 (464)
.|+.+++++|+++|++++ ..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|+
T Consensus 127 ~~~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll 204 (236)
T 1ikn_D 127 HGYLGIVELLVSLGADVN-AQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLG 204 (236)
T ss_dssp TTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHH
Confidence 999999999999999988 4565 999999999999999999999999988 5999999999999999999999999999
Q ss_pred cCcchhhhhhccCCCCCcHHHHHHHcC
Q 038664 306 KLPEIEDMINSSDLEGNTPLHLAAINN 332 (464)
Q Consensus 306 ~~~~~~~~~~~~d~~g~t~Lh~A~~~~ 332 (464)
+.+.. .....++..|.||.+.+....
T Consensus 205 ~~ga~-~~~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 205 QLTLE-NLQMLPESEDEESYDTESEFT 230 (236)
T ss_dssp TTSCG-GGSSCCCCCTTTCCCCC----
T ss_pred Hcchh-hhhcCCccchHHHHhhhcccc
Confidence 98431 123478888999987765543
No 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=6.2e-33 Score=237.59 Aligned_cols=194 Identities=19% Similarity=0.190 Sum_probs=146.3
Q ss_pred CCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCC
Q 038664 36 QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEG 115 (464)
Q Consensus 36 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g 115 (464)
..+.||||.|+..|+.+.++.|++.++..++..+..|.||||+|+..|+.+++++|++++++. +.++..|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g 72 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI----------NLQNSIS 72 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT----------TCCCTTS
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CCCCCCC
Confidence 456788888888888888888888777447777778888888888888888888888877763 3567778
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCC
Q 038664 116 NTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSN 195 (464)
Q Consensus 116 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~ 195 (464)
.||||+|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.+....+..+..|.||||+|+..++
T Consensus 73 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 152 (201)
T 3hra_A 73 DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE 152 (201)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSC
T ss_pred CCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhcc
Confidence 88888888888888888888665544566777777888888877777777777777733336777777777777777776
Q ss_pred -----HHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcC
Q 038664 196 -----FVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDED 240 (464)
Q Consensus 196 -----~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~ 240 (464)
.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|
T Consensus 153 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 153 GNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp CSHHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred chhhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 7777777777766 6777777777777777777777777777654
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.2e-33 Score=246.13 Aligned_cols=211 Identities=18% Similarity=0.167 Sum_probs=147.1
Q ss_pred CCCchhHHHHhcCCHHHHHHHHHh-CCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCC
Q 038664 37 NRDTALHIAARFGHKNVVMEILEL-RPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEG 115 (464)
Q Consensus 37 ~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g 115 (464)
.|+||||+|+..|+.+++++|++. +.+ ++.+|..|.||||+|+..|+.+++++|++.+++.... ..+..+..|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~~~~~g 75 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE-----PMTSELYEG 75 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-----CCCSTTTTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc-----cccccCCCC
Confidence 478889999988888888888887 655 7778888888999888888888888888887663200 013456778
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCC
Q 038664 116 NTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSN 195 (464)
Q Consensus 116 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~ 195 (464)
.||||+|+..|+.+++++|++.++++. ..+.. +.+. ...+..+..|.||||+|+..++
T Consensus 76 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~--~~~~-------------------~~~~~~~~~g~t~L~~A~~~~~ 133 (232)
T 2rfa_A 76 QTALHIAVINQNVNLVRALLARGASVS-ARATG--SVFH-------------------YRPHNLIYYGEHPLSFAACVGS 133 (232)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCS--GGGS-------------------CCTTCSCCCCSSHHHHHHHHTC
T ss_pred cCHHHHHHHcCCHHHHHHHHhCCCCCC-cccCC--ccee-------------------ecccccccCCCCHHHHHHHcCC
Confidence 888888888888888888888887743 22221 1100 0013344566667777777777
Q ss_pred HHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHH----HHHhhcCCCcc-----ccccCCCCCcccccccCCcHHH
Q 038664 196 FVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA----CRLSDEDDTLA-----YERDCNGQSPLHLASENGKLSL 266 (464)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v----~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~~g~~~~ 266 (464)
.+++++|++.+.+ ++..|..|.||||+|+..++.+++ ++|++.+++.. ..++..|+||||+|++.|+.++
T Consensus 134 ~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~ 212 (232)
T 2rfa_A 134 EEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212 (232)
T ss_dssp HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHH
Confidence 7777777766665 566677777777777777776666 67777766553 3466677777777777777777
Q ss_pred HHHHHHHCCC
Q 038664 267 LKRLLHSYPD 276 (464)
Q Consensus 267 v~~Ll~~~~~ 276 (464)
+++|+++++.
T Consensus 213 v~~Ll~~g~~ 222 (232)
T 2rfa_A 213 FQHLMQKRKH 222 (232)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhcCcc
Confidence 7777776654
No 45
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2e-33 Score=246.36 Aligned_cols=197 Identities=21% Similarity=0.258 Sum_probs=125.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHh-cCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhh----hhhcCCCCcHHHH
Q 038664 149 GQSPLSLAIDAGLTHIACCIIKE-KLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLI----NVLDKRDRNPLHY 223 (464)
Q Consensus 149 g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~----~~~~~~g~t~L~~ 223 (464)
|.||||.|+..|+.+++++|++. +.++ +..+..|.||||+|+..|+.+++++|++.+++.. +..|..|.||||+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 34444444444444444444443 2222 3444444444444444444444444444444311 2334455556666
Q ss_pred HHHcCCHHHHHHHhhcCCCccc------------cccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHH
Q 038664 224 AAALGHFEIACRLSDEDDTLAY------------ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHL 291 (464)
Q Consensus 224 a~~~~~~~~v~~Ll~~~~~~~~------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~ 291 (464)
|+..|+.+++++|+++|++... ..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~ 160 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHI 160 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHH
Confidence 6655566666666555555442 1234788999999999999999999988887 58888899999999
Q ss_pred HHhcCchHHH----HHHhcCcchhhhh------hccCCCCCcHHHHHHHcCCchHHHHHHhccccccccc
Q 038664 292 AAQNGHANVV----VFISKLPEIEDMI------NSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRAT 351 (464)
Q Consensus 292 A~~~~~~~~~----~~L~~~~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~ 351 (464)
|+..++.+++ ++|++. +++. +.+|..|+||||+|++.|+.+++++|+++ |.+....
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~---g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~-g~~~~~~ 226 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSY---DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK-RKHIAAA 226 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHT---TCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHHC---
T ss_pred HHHcCChHHHHHHHHHHHhc---CCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc-Cccchhh
Confidence 9999988887 777776 3333 67889999999999999999999999976 6655443
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.1e-32 Score=236.06 Aligned_cols=193 Identities=21% Similarity=0.213 Sum_probs=143.7
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHH
Q 038664 147 KAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAA 226 (464)
Q Consensus 147 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~ 226 (464)
..+.|||+.|+..|+.+.++.++..+....+..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence 34566666666666666666666666533466666677777777777777777777777665 66677777777777777
Q ss_pred cCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCc-----hHHH
Q 038664 227 LGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGH-----ANVV 301 (464)
Q Consensus 227 ~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~-----~~~~ 301 (464)
.|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|+..++ .+++
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 77788887777554433335777788888888888888888888888854468888888888888888877 7888
Q ss_pred HHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhc
Q 038664 302 VFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN 343 (464)
Q Consensus 302 ~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 343 (464)
++|++. +++++.+|..|+||||+|++.|+.+++++|++.
T Consensus 162 ~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 162 KLLMEN---GADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHHC---CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 888877 677888888888888888888888888888854
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.9e-32 Score=223.79 Aligned_cols=160 Identities=26% Similarity=0.398 Sum_probs=142.7
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHh
Q 038664 3 TVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARA 82 (464)
Q Consensus 3 ~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~ 82 (464)
.+.++|+.||+.|+.+.|+.||+. |.+++.++..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..
T Consensus 3 dlg~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~ 80 (169)
T 4gpm_A 3 ELGKRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAEN 80 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHc
Confidence 456789999999999999988875 459999999999999999999999999999999998 788999999999999999
Q ss_pred CCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCH
Q 038664 83 GNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLT 162 (464)
Q Consensus 83 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~ 162 (464)
|+.+++++|+++|++. +.+|..|+||||+|+..|+.+++++|++.+++ ++.+|..|.|||++|+..|+.
T Consensus 81 g~~~~v~~Ll~~gadv----------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~ 149 (169)
T 4gpm_A 81 GHKEVVKLLISKGADV----------NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNE 149 (169)
T ss_dssp TCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred CCHHHHHHHHHCcCCC----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCH
Confidence 9999999999999884 47889999999999999999999999999988 567889999999999999999
Q ss_pred HHHHHHHHhcCcC
Q 038664 163 HIACCIIKEKLSV 175 (464)
Q Consensus 163 ~~~~~Ll~~~~~~ 175 (464)
+++++|+++|+++
T Consensus 150 ~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 150 EVVKLLEKQGGWL 162 (169)
T ss_dssp HHHHHHHTC----
T ss_pred HHHHHHHHCCCCc
Confidence 9999999999876
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1e-32 Score=248.06 Aligned_cols=206 Identities=15% Similarity=0.207 Sum_probs=137.8
Q ss_pred CcccccCCCCchhHHHHhcCCHHHHHHHHHh----CCcccc---ccccCCCCHHHHHHHh---CCHHHHHHHhcccCCCC
Q 038664 30 GILDMSQNRDTALHIAARFGHKNVVMEILEL----RPDLVS---VENHKSETPMHVAARA---GNFGVAKIFMRPHGNGN 99 (464)
Q Consensus 30 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~---~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~ 99 (464)
..+..+..|+||||+||..|+.++|+.|++. +.++.. ..+..|.||||+|+.. |+.+++++|++.+++..
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~ 84 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD 84 (273)
T ss_dssp ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT
T ss_pred cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc
Confidence 3446788999999999999999999998874 444211 4588999999999987 99999999999987543
Q ss_pred CCcchHHHHhh----cCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccc--------------CCCcHHHHHHHcCC
Q 038664 100 NTGTFDDILRK----QDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINK--------------AGQSPLSLAIDAGL 161 (464)
Q Consensus 100 ~~~~~~~~~~~----~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--------------~g~t~l~~A~~~g~ 161 (464)
. ....++. .|..|.||||+|+..|+.+++++|++.++++ +..+. .|.||||+|+..|+
T Consensus 85 ~---~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~ 160 (273)
T 2pnn_A 85 S---LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160 (273)
T ss_dssp C---HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC
T ss_pred c---hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCC
Confidence 1 1112232 5678999999999999999999999998884 44444 46666666666666
Q ss_pred HHHHHHHHH---hcCcCcCCCCCCCCCHHHHHHHcCC---------HHHHHHHHHhCchhhh-------hhcCCCCcHHH
Q 038664 162 THIACCIIK---EKLSVLDHRGPNDLTLLHIAIIKSN---------FVVMAKILEAKRDLIN-------VLDKRDRNPLH 222 (464)
Q Consensus 162 ~~~~~~Ll~---~~~~~~~~~~~~~~~~l~~a~~~~~---------~~~~~~ll~~~~~~~~-------~~~~~g~t~L~ 222 (464)
.+++++|++ .+.++ +..+..|.||||+|+..++ .+++++|++.+.+ ++ ..|..|+||||
T Consensus 161 ~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~-~n~~~~~~~~~d~~g~TpL~ 238 (273)
T 2pnn_A 161 LAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK-LHPTLKLEEITNRKGLTPLA 238 (273)
T ss_dssp HHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHH
T ss_pred HHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh-cccccccccccCCCCCCHHH
Confidence 666666666 55554 5555556666666665555 4555555555544 32 34555555555
Q ss_pred HHHHcCCHHHHHHHhhcCC
Q 038664 223 YAAALGHFEIACRLSDEDD 241 (464)
Q Consensus 223 ~a~~~~~~~~v~~Ll~~~~ 241 (464)
+|+..|+.+++++|+++|+
T Consensus 239 ~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 239 LAASSGKIGVLAYILQREI 257 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhChHHHHHHHHHCCC
Confidence 5555555555555555555
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.9e-32 Score=225.63 Aligned_cols=159 Identities=32% Similarity=0.439 Sum_probs=137.8
Q ss_pred CHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcH
Q 038664 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKL 264 (464)
Q Consensus 185 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 264 (464)
+.|+.|++.|+.++++.|++.+.+ ++.+|.+|+||||+|+..++.+++++|++.|++++ .++..|+||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHcCCH
Confidence 368888888999999999988887 78889999999999999999999999999998887 6888899999999999999
Q ss_pred HHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcc
Q 038664 265 SLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNM 344 (464)
Q Consensus 265 ~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 344 (464)
+++++|+++|++ ++.+|.+|+||||+|++.|+.+++++|++. +++++.+|.+|+||||+|++.|+.+++++|+++
T Consensus 84 ~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~- 158 (169)
T 4gpm_A 84 EVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISK---GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ- 158 (169)
T ss_dssp HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHC-
Confidence 999999999888 589999999999999999999999999987 788899999999999999999999999999976
Q ss_pred cccccc
Q 038664 345 RVNIRA 350 (464)
Q Consensus 345 ~~d~~~ 350 (464)
|++++.
T Consensus 159 GA~ie~ 164 (169)
T 4gpm_A 159 GGWLEH 164 (169)
T ss_dssp ------
T ss_pred CCCcCC
Confidence 988764
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=3.1e-32 Score=242.49 Aligned_cols=202 Identities=15% Similarity=0.157 Sum_probs=140.7
Q ss_pred CCCchhHHHHhcCCHH----HHHHHHHhCCccccc----cccCCCCHHHHHHHh---CCHHHHHHHhcccCCCCCCcchH
Q 038664 37 NRDTALHIAARFGHKN----VVMEILELRPDLVSV----ENHKSETPMHVAARA---GNFGVAKIFMRPHGNGNNTGTFD 105 (464)
Q Consensus 37 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~ 105 (464)
.|+||||+||..|+.+ ++++|++.+.+ ++. .+..|.||||+|+.. |+.+++++|++.+++........
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 4789999999999997 66777778988 565 899999999999999 99999999999987654221110
Q ss_pred -HHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccC-------------CCcHHHHHHHcCCHHHHHHHHH-
Q 038664 106 -DILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKA-------------GQSPLSLAIDAGLTHIACCIIK- 170 (464)
Q Consensus 106 -~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-------------g~t~l~~A~~~g~~~~~~~Ll~- 170 (464)
......|..|.||||+|+..|+.+++++|++.++++ +..+.. |.||||+|+..|+.+++++|++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 158 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 001124567999999999999999999999998884 444544 6666666666666666666666
Q ss_pred --hcCcCcCCCCCCCCCHHHHHHH--cCCHH-------HHHHHHHhCchhh-------hhhcCCCCcHHHHHHHcCCHHH
Q 038664 171 --EKLSVLDHRGPNDLTLLHIAII--KSNFV-------VMAKILEAKRDLI-------NVLDKRDRNPLHYAAALGHFEI 232 (464)
Q Consensus 171 --~~~~~~~~~~~~~~~~l~~a~~--~~~~~-------~~~~ll~~~~~~~-------~~~~~~g~t~L~~a~~~~~~~~ 232 (464)
.+.++ +..+..|.||||+|+. .++.+ ++++|++.+++ + +..|..|.||||+|+..|+.++
T Consensus 159 ~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~ 236 (256)
T 2etb_A 159 PHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR-LCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236 (256)
T ss_dssp SSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred cccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC-cccccccccccCCCCCCHHHHHHHhCCHHH
Confidence 55554 5555666666666665 55555 55666665554 3 4555555555555555555555
Q ss_pred HHHHhhcCCC
Q 038664 233 ACRLSDEDDT 242 (464)
Q Consensus 233 v~~Ll~~~~~ 242 (464)
+++|+++|..
T Consensus 237 v~~Ll~~g~~ 246 (256)
T 2etb_A 237 FRHILQREFS 246 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhCCCC
Confidence 5555555543
No 51
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=9.3e-33 Score=248.27 Aligned_cols=221 Identities=16% Similarity=0.191 Sum_probs=151.0
Q ss_pred hhcCCCCCcHHHHHHHcCCHHHHHHHHHh----CCcccc---ccccCCCcHHHHHHHc---CCHHHHHHHHHhcCcCcCC
Q 038664 109 RKQDEEGNTPLHNAVRKCDGKMAFTMIRK----DPELIC---YINKAGQSPLSLAIDA---GLTHIACCIIKEKLSVLDH 178 (464)
Q Consensus 109 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----~~~~~~---~~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~ 178 (464)
+..+..|.||||+|+..|+.++++.|++. +..+.. ..+..|.||||+|+.. |+.+++++|++.+.+...
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~- 85 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS- 85 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC-
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc-
Confidence 45667777777777777777777776663 222211 2355666777776665 666666666666543200
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccC---------
Q 038664 179 RGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDC--------- 249 (464)
Q Consensus 179 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~--------- 249 (464)
++.++... ....|..|.||||+|+..|+.+++++|+++|++++ ..+.
T Consensus 86 --------------------~~~~i~~~---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~ 141 (273)
T 2pnn_A 86 --------------------LKQFVNAS---YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKG 141 (273)
T ss_dssp --------------------HHHHHTCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSS
T ss_pred --------------------hhHHhhcc---cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccccccccc
Confidence 01111111 12245678888888888888888888888877776 3443
Q ss_pred -----CCCCcccccccCCcHHHHHHHHH---HCCCcccccccCCCchhHHHHhcCc---------hHHHHHHhcCcchhh
Q 038664 250 -----NGQSPLHLASENGKLSLLKRLLH---SYPDSIEFLDKKNRNILHLAAQNGH---------ANVVVFISKLPEIED 312 (464)
Q Consensus 250 -----~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~L~~A~~~~~---------~~~~~~L~~~~~~~~ 312 (464)
.|.||||+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+..++ .+++++|++. ++
T Consensus 142 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~---ga 217 (273)
T 2pnn_A 142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL---GA 217 (273)
T ss_dssp SCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---HH
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh---hh
Confidence 79999999999999999999999 7777 59999999999999999887 7889999887 67
Q ss_pred hhh-------ccCCCCCcHHHHHHHcCCchHHHHHHhcccc-ccccccccCCChH
Q 038664 313 MIN-------SSDLEGNTPLHLAAINNHFNIVLILARNMRV-NIRATNEKKQTAL 359 (464)
Q Consensus 313 ~~~-------~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~-d~~~~n~~g~t~l 359 (464)
+++ .+|..|+||||+|++.|+.+++++|+++ |+ |+......+.+|-
T Consensus 218 ~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-EIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HTC-------------
T ss_pred hcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC-CCCCchhhhhhhhhcc
Confidence 775 5899999999999999999999999987 77 8888877777664
No 52
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.98 E-value=1.3e-32 Score=244.91 Aligned_cols=205 Identities=17% Similarity=0.197 Sum_probs=146.3
Q ss_pred CCcHHHHHHHcCCHH----HHHHHHHhCCcccc---ccccCCCcHHHHHHHc---CCHHHHHHHHHhcCcCcCCCCCCCC
Q 038664 115 GNTPLHNAVRKCDGK----MAFTMIRKDPELIC---YINKAGQSPLSLAIDA---GLTHIACCIIKEKLSVLDHRGPNDL 184 (464)
Q Consensus 115 g~t~L~~A~~~~~~~----~~~~Ll~~~~~~~~---~~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~~~ 184 (464)
|+||||+|+..|+.+ ++++|++.+.++.. ..+..|.||||+|+.. |+.+++++|++.+.+. +..+.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~-~~~~~--- 77 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDS-GNPKP--- 77 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHT-TCSSC---
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcc-cchhh---
Confidence 566677777666665 44555556655322 1456666666666666 6666666666665544 11110
Q ss_pred CHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCC-------------C
Q 038664 185 TLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCN-------------G 251 (464)
Q Consensus 185 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~-------------g 251 (464)
++... ....|..|.||||+|+..|+.+++++|+++|++++ ..+.. |
T Consensus 78 -----------------~~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g 136 (256)
T 2etb_A 78 -----------------LVNAQ---CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFG 136 (256)
T ss_dssp -----------------GGGCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSC
T ss_pred -----------------hcccc---cccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCC
Confidence 00000 11234567777777777777777777777777666 34443 9
Q ss_pred CCcccccccCCcHHHHHHHHH---HCCCcccccccCCCchhHHHHh--cCchH-------HHHHHhcCcchhhhh-----
Q 038664 252 QSPLHLASENGKLSLLKRLLH---SYPDSIEFLDKKNRNILHLAAQ--NGHAN-------VVVFISKLPEIEDMI----- 314 (464)
Q Consensus 252 ~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~L~~A~~--~~~~~-------~~~~L~~~~~~~~~~----- 314 (464)
.||||+|+..|+.+++++|++ ++.+ ++.+|..|+||||+|+. .++.+ ++++|++. ++++
T Consensus 137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~---ga~~~~~~~ 212 (256)
T 2etb_A 137 ELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM---GARLCPTVQ 212 (256)
T ss_dssp SSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---HHHHSTTCC
T ss_pred CCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc---CCCcccccc
Confidence 999999999999999999999 7777 58999999999999998 78887 99999887 7778
Q ss_pred --hccCCCCCcHHHHHHHcCCchHHHHHHhccccccc
Q 038664 315 --NSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIR 349 (464)
Q Consensus 315 --~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~ 349 (464)
+.+|..|+||||+|++.|+.+++++|+++ |.+..
T Consensus 213 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~ 248 (256)
T 2etb_A 213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQR-EFSGA 248 (256)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HHHHH
T ss_pred cccccCCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCC
Confidence 88999999999999999999999999976 65543
No 53
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=2.3e-33 Score=260.39 Aligned_cols=281 Identities=12% Similarity=0.048 Sum_probs=197.4
Q ss_pred CCchhHHHHh-cCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCC
Q 038664 38 RDTALHIAAR-FGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN 116 (464)
Q Consensus 38 g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~ 116 (464)
+.+++++|.. .++.++++++++++.+ +.||||+|++.|+.+++++|++.++.... ....+..|.
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~--------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~-------~~~~~~~~~ 129 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKKGIK--------SEVICFVAAITGCSSALDTLCLLLTSDEI-------VKVIQAENY 129 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHHTCC--------HHHHHHHHHHHCCHHHHHHHTTC--CCSS-------CC--CHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCC--------cCCHHHHHHHcCCHHHHHHHHHcCCcHHH-------HHHhccCCC
Confidence 3567888876 5788999999988766 35999999999999999999998873210 112344567
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCcc--ccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCC--CCCCCCCHHHHHH-
Q 038664 117 TPLHNAVRKCDGKMAFTMIRKDPEL--ICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDH--RGPNDLTLLHIAI- 191 (464)
Q Consensus 117 t~L~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~--~~~~~~~~l~~a~- 191 (464)
||||+|+..|+.+++++|++.+++. .+..+.+ .||||+|+..|+.+++++|+++++++ +. .+..|.||||+|+
T Consensus 130 tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~ 207 (376)
T 2aja_A 130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAV 207 (376)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHH
Confidence 8999999999999999999999642 1122233 89999999999999999999988875 33 5666789999999
Q ss_pred HcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHH----
Q 038664 192 IKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLL---- 267 (464)
Q Consensus 192 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v---- 267 (464)
.+|+.+++++|++.+.. |.||||+|+..|+.+++++|++++++... .+ ++++.|+..|+.+++
T Consensus 208 ~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~g~~evv~lL~~~ga~~~~-~~----~~l~~A~~~g~~~vv~~~~ 274 (376)
T 2aja_A 208 GRGHHNVINFLLDCPVM--------LAYAEIHEFEYGEKYVNPFIARHVNRLKE-MH----DAFKLSNPDGVFDLVTKSE 274 (376)
T ss_dssp TTCCHHHHHHHTTSHHH--------HHHHHHCTTTTTTTTHHHHHHHHHHHHHH-HH----TTTTTTSSSSCCCCSSHHH
T ss_pred HCCCHHHHHHHHhCCCc--------cchHHHHHHHCCCHHHHHHHHhcCccccc-cc----HHHHHHHHCCChhhhcHHh
Confidence 99999999999885432 67899999999999999999988876652 22 478888888887743
Q ss_pred --------HHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhh--hccCCCCCcHHHHHHHcCCchHH
Q 038664 268 --------KRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMI--NSSDLEGNTPLHLAAINNHFNIV 337 (464)
Q Consensus 268 --------~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~--~~~d~~g~t~Lh~A~~~~~~~~v 337 (464)
+.|+..+. .+..+.+++|++.+...... ......++||||+|++.|+.+++
T Consensus 275 ~~~~~~~~~~li~~~~-------------------~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v 335 (376)
T 2aja_A 275 CLQGFYMLRNLIRRND-------------------EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC 335 (376)
T ss_dssp HHHHHHHHHHHHHHCC-------------------GGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHH
T ss_pred hhhhHHHHHHHHHcch-------------------hhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHH
Confidence 34444331 12356677777754322222 22344678999999999999999
Q ss_pred HHHHhccccccccccccCCChHHhhccCchhhHH
Q 038664 338 LILARNMRVNIRATNEKKQTALAIVQPSLHQNDI 371 (464)
Q Consensus 338 ~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~ 371 (464)
++|++. ...++..|+||+++|..+++.+..
T Consensus 336 ~lLl~~----~~v~~~~~~~~~~~~~~~~~~~~~ 365 (376)
T 2aja_A 336 ALLLSI----PSVLALTKANNYYINETGGRLDLR 365 (376)
T ss_dssp HHHTTS----HHHHHSCC----------------
T ss_pred HHHHcC----hHHHHHHHHhccccccccccccHH
Confidence 999975 367899999999999988876653
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=3e-31 Score=236.73 Aligned_cols=204 Identities=18% Similarity=0.207 Sum_probs=138.0
Q ss_pred cCCCCchhHHHHhcCCHHHHHHHH----HhCCccccccc----cCCCCHHHHHH---HhCCHHHHHHHhcccCCCCCCcc
Q 038664 35 SQNRDTALHIAARFGHKNVVMEIL----ELRPDLVSVEN----HKSETPMHVAA---RAGNFGVAKIFMRPHGNGNNTGT 103 (464)
Q Consensus 35 ~~~g~t~Lh~A~~~g~~~~v~~Ll----~~~~~~~~~~~----~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~~~~~~~ 103 (464)
+..++|+||.|+..|+.+.++.|+ +.+.+ ++..+ ..|.||||+|+ ..|+.+++++|++.+++......
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence 456889999999999999655554 48887 44444 67999999999 67999999999998865431100
Q ss_pred h-HHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccc--------------cCCCcHHHHHHHcCCHHHHHHH
Q 038664 104 F-DDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYIN--------------KAGQSPLSLAIDAGLTHIACCI 168 (464)
Q Consensus 104 ~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~l~~A~~~g~~~~~~~L 168 (464)
. ...+...|..|.||||+|+..|+.+++++|++.++++ +..+ ..|.||||+|+..|+.+++++|
T Consensus 81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 159 (260)
T 3jxi_A 81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159 (260)
T ss_dssp HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 0 0012234457888888888888888888888888774 3444 4566666666666666666666
Q ss_pred HH---hcCcCcCCCCCCCCCHHHHHHHcCC---------HHHHHHHHHhCchhh-------hhhcCCCCcHHHHHHHcCC
Q 038664 169 IK---EKLSVLDHRGPNDLTLLHIAIIKSN---------FVVMAKILEAKRDLI-------NVLDKRDRNPLHYAAALGH 229 (464)
Q Consensus 169 l~---~~~~~~~~~~~~~~~~l~~a~~~~~---------~~~~~~ll~~~~~~~-------~~~~~~g~t~L~~a~~~~~ 229 (464)
++ .+.++ +..+..|.||||+|+..++ .++++.|++.+.+ + +..|..|.||||+|++.|+
T Consensus 160 l~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g~ 237 (260)
T 3jxi_A 160 TENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK-LFPDTNLEALLNNDGLSPLMMAAKTGK 237 (260)
T ss_dssp HHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc-cccccchhhcccCCCCCHHHHHHHcCC
Confidence 66 55555 5666666666666666555 4666666666554 3 4455666666666666666
Q ss_pred HHHHHHHhhcCCC
Q 038664 230 FEIACRLSDEDDT 242 (464)
Q Consensus 230 ~~~v~~Ll~~~~~ 242 (464)
.+++++|+++|..
T Consensus 238 ~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 238 IGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC
Confidence 6666666665544
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=2e-31 Score=237.83 Aligned_cols=207 Identities=15% Similarity=0.143 Sum_probs=146.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHH----hCCccccc---cccCCCcHHHHHH---HcCCHHHHHHHHHhcCcCcCCCCCC
Q 038664 113 EEGNTPLHNAVRKCDGKMAFTMIR----KDPELICY---INKAGQSPLSLAI---DAGLTHIACCIIKEKLSVLDHRGPN 182 (464)
Q Consensus 113 ~~g~t~L~~A~~~~~~~~~~~Ll~----~~~~~~~~---~~~~g~t~l~~A~---~~g~~~~~~~Ll~~~~~~~~~~~~~ 182 (464)
..++|+||.|+..|+.+.++.|++ .+.++... .+..|.||||+|+ ..|+.+++++|++.+.+...
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~----- 77 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGN----- 77 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTC-----
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccc-----
Confidence 445666666666666663333333 45443211 1244555555555 44555555555555443200
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCcccccc--------------
Q 038664 183 DLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERD-------------- 248 (464)
Q Consensus 183 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~-------------- 248 (464)
...++. . ..+..|..|.||||+|+..|+.+++++|+++|++++. .+
T Consensus 78 ----------------~~~~~~--~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~ 137 (260)
T 3jxi_A 78 ----------------MREFIN--S-PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA-QARGRFFQPKDEGGYF 137 (260)
T ss_dssp ----------------HHHHHT--C-CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCEECCCSSSCCCCSC
T ss_pred ----------------hHhhhc--c-cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc-cccccccCcccccccc
Confidence 000000 1 1233455788999999999999999999998888773 44
Q ss_pred CCCCCcccccccCCcHHHHHHHHH---HCCCcccccccCCCchhHHHHhcCc---------hHHHHHHhcCcchhhhh--
Q 038664 249 CNGQSPLHLASENGKLSLLKRLLH---SYPDSIEFLDKKNRNILHLAAQNGH---------ANVVVFISKLPEIEDMI-- 314 (464)
Q Consensus 249 ~~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~L~~A~~~~~---------~~~~~~L~~~~~~~~~~-- 314 (464)
..|.||||+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+..++ .+++++|++. ++++
T Consensus 138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~---ga~~~~ 213 (260)
T 3jxi_A 138 YFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK---CAKLFP 213 (260)
T ss_dssp CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH---HHHHCT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh---Cccccc
Confidence 579999999999999999999999 7777 59999999999999998777 6888998887 6777
Q ss_pred -----hccCCCCCcHHHHHHHcCCchHHHHHHhccccccc
Q 038664 315 -----NSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIR 349 (464)
Q Consensus 315 -----~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~ 349 (464)
+.+|..|+||||+|++.|+.+++++|+++ |.+..
T Consensus 214 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~ 252 (260)
T 3jxi_A 214 DTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR-EIADA 252 (260)
T ss_dssp TCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HHHHH
T ss_pred ccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh-CCCcc
Confidence 67999999999999999999999999987 55443
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=1.3e-30 Score=217.10 Aligned_cols=170 Identities=21% Similarity=0.214 Sum_probs=148.3
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCC
Q 038664 183 DLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENG 262 (464)
Q Consensus 183 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 262 (464)
+.+|||.|+..|+.++++++++.++..++..+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHHCC
Confidence 45789999999999999999998888788889999999999999999999999999998877 57888999999999999
Q ss_pred cHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHh
Q 038664 263 KLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILAR 342 (464)
Q Consensus 263 ~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~ 342 (464)
+.+++++|++++.+ ++.+|..|+||||+|+..++.+++++|++. +++++.+|..|+||||+|++.++.+++++|++
T Consensus 81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (172)
T 3v30_A 81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLAR---GADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156 (172)
T ss_dssp CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence 99999999999888 588999999999999999999999999987 78899999999999999999999999999997
Q ss_pred ccccccccccccCCCh
Q 038664 343 NMRVNIRATNEKKQTA 358 (464)
Q Consensus 343 ~~~~d~~~~n~~g~t~ 358 (464)
+ ++++..+|..|.||
T Consensus 157 ~-~~~~~~~~~~~~~p 171 (172)
T 3v30_A 157 H-ILKLFQSNLVPADP 171 (172)
T ss_dssp H-HHHHSCC-------
T ss_pred H-HHHHhcccCCCCCC
Confidence 6 99999999999887
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=8.9e-31 Score=235.05 Aligned_cols=194 Identities=21% Similarity=0.274 Sum_probs=140.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhcCcC-cCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHH--
Q 038664 149 GQSPLSLAIDAGLTHIACCIIKEKLSV-LDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAA-- 225 (464)
Q Consensus 149 g~t~l~~A~~~g~~~~~~~Ll~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~-- 225 (464)
..+++|.|+..++.+.++.+++.+.+. .+..|..|.||||+|+..|+.+++++|++.++..++..+..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 345566666666666666666554431 26667777777777777777777777777776446777777777777777
Q ss_pred ---HcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHH
Q 038664 226 ---ALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVV 302 (464)
Q Consensus 226 ---~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~ 302 (464)
..++.+++++|++.|.... ..+..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.++++
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 5567777777777776655 4666777888888888888888888877777 4777788888888888888888888
Q ss_pred HHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcccc
Q 038664 303 FISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRV 346 (464)
Q Consensus 303 ~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~ 346 (464)
+|++.. +++++.+|..|+||||+|++.|+.+++++|+++.++
T Consensus 234 ~Ll~~~--gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 234 LLLAVP--SCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp HHHTST--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred HHHhcC--CCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence 877621 567777788888888888888888888888776443
No 58
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=4e-32 Score=252.03 Aligned_cols=275 Identities=11% Similarity=0.097 Sum_probs=191.1
Q ss_pred cCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCcc--ccccccCCCCHHHHHHHhCCHHHHHHH
Q 038664 14 RGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDL--VSVENHKSETPMHVAARAGNFGVAKIF 91 (464)
Q Consensus 14 ~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~L 91 (464)
.++.+.++.+++. +.+++||||+||..|+.++|++|++.++.. ....+..|.||||+|+..|+.++|++|
T Consensus 76 ~~~~~~~~~l~~~--------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~L 147 (376)
T 2aja_A 76 RNAKQLWSDAHKK--------GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 147 (376)
T ss_dssp TTCTTHHHHHHHH--------TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHc--------CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHH
Confidence 3555555555543 234569999999999999999999998731 123456788999999999999999999
Q ss_pred hcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccc-ccccCCCcHHHHHH-HcCCHHHHHHHH
Q 038664 92 MRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELIC-YINKAGQSPLSLAI-DAGLTHIACCII 169 (464)
Q Consensus 92 l~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~l~~A~-~~g~~~~~~~Ll 169 (464)
++++++.. ...++..+ .||||+|+..|+.+++++|+++++++.. ..+..|.||||+|+ ..|+.+++++|+
T Consensus 148 l~~gad~~-----~~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll 219 (376)
T 2aja_A 148 CELAPTEI-----MAMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 219 (376)
T ss_dssp HHSCTTTH-----HHHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHT
T ss_pred HhCCCCcc-----ccccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 99986521 00122222 8999999999999999999999988532 26788999999999 999999999999
Q ss_pred HhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHH------------HHHh
Q 038664 170 KEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIA------------CRLS 237 (464)
Q Consensus 170 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v------------~~Ll 237 (464)
+.+.. +.|||++|+..|+.+++++|++.+.+ ++..+ ++++.|+..|+.+++ +.|+
T Consensus 220 ~~ga~--------~~taL~~Aa~~g~~evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li 286 (376)
T 2aja_A 220 DCPVM--------LAYAEIHEFEYGEKYVNPFIARHVNR-LKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLI 286 (376)
T ss_dssp TSHHH--------HHHHHHCTTTTTTTTHHHHHHHHHHH-HHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHH
T ss_pred hCCCc--------cchHHHHHHHCCCHHHHHHHHhcCcc-ccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHH
Confidence 96642 68999999999999999999999876 45444 478888888887743 4444
Q ss_pred hcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcc----cccccCCCchhHHHHhcCchHHHHHHhcCcchhhh
Q 038664 238 DEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSI----EFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDM 313 (464)
Q Consensus 238 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~----~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~ 313 (464)
.++ ..+..+.+++|++...... ......+.+|||+|++.|+.+++++|++.+
T Consensus 287 ~~~-------------------~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----- 342 (376)
T 2aja_A 287 RRN-------------------DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP----- 342 (376)
T ss_dssp HHC-------------------CGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH-----
T ss_pred Hcc-------------------hhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh-----
Confidence 443 1234678888886432100 112345678999999999999999999873
Q ss_pred hhccCCCCCcHHHHHHHcCCchHHHHHHh
Q 038664 314 INSSDLEGNTPLHLAAINNHFNIVLILAR 342 (464)
Q Consensus 314 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~ 342 (464)
..++..|+|++.+|-..|+.++++.-+.
T Consensus 343 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (376)
T 2aja_A 343 -SVLALTKANNYYINETGGRLDLRAVALE 370 (376)
T ss_dssp -HHHHSCC---------------------
T ss_pred -HHHHHHHHhccccccccccccHHHHHHH
Confidence 4567789999999999999998876543
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=5.7e-29 Score=207.13 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=89.7
Q ss_pred CchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcH
Q 038664 39 DTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTP 118 (464)
Q Consensus 39 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~ 118 (464)
.||||.|+..|+.+++++|++.+++.++..+..|.||||+|+..|+.+++++|++.+++. +..+..|.||
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~ 72 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP----------HILAKERESA 72 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT----------TCCCTTCCCH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----------hhhcccCCCH
Confidence 456666666666666666666655555555566666666666666666666666655542 2445555666
Q ss_pred HHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHH
Q 038664 119 LHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVV 198 (464)
Q Consensus 119 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 198 (464)
||+|+..++.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.++
T Consensus 73 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~ 150 (172)
T 3v30_A 73 LSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKV 150 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHH
Confidence 6666666666666666655555 3344555555555555555555555555555554 4455555555555555555555
Q ss_pred HHHHHHhCch
Q 038664 199 MAKILEAKRD 208 (464)
Q Consensus 199 ~~~ll~~~~~ 208 (464)
+++|++++..
T Consensus 151 ~~~L~~~~~~ 160 (172)
T 3v30_A 151 QQVIENHILK 160 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 60
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=6.5e-29 Score=204.68 Aligned_cols=159 Identities=18% Similarity=0.216 Sum_probs=127.1
Q ss_pred CcccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHH
Q 038664 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAAR 81 (464)
Q Consensus 2 ~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 81 (464)
+...++|+.|++.|+.+.++.+++. +.+++..+..|+||||+|+. |+.+++++|++.+++ ++.++..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 79 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAAR 79 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhC-CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence 4566788888888888888887764 45777778888888888888 888888888888877 67778888888888888
Q ss_pred hCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCC
Q 038664 82 AGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGL 161 (464)
Q Consensus 82 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~ 161 (464)
.|+.+++++|++.+++. +.++..|.||||+|+..|+.+++++|++.+++..+..+..|.|||++|+..|+
T Consensus 80 ~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~ 149 (162)
T 1ihb_A 80 AGFLDTLQTLLEFQADV----------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149 (162)
T ss_dssp HTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cCCHHHHHHHHHcCCCC----------CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence 88888888888887763 36777888888888888888888888888887666777888888888888888
Q ss_pred HHHHHHHHHhcC
Q 038664 162 THIACCIIKEKL 173 (464)
Q Consensus 162 ~~~~~~Ll~~~~ 173 (464)
.+++++|+++|+
T Consensus 150 ~~~~~~Ll~~GA 161 (162)
T 1ihb_A 150 NEVVSLMQANGA 161 (162)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHhCC
Confidence 888888888765
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=7.4e-29 Score=210.39 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=96.9
Q ss_pred ccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhc
Q 038664 32 LDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQ 111 (464)
Q Consensus 32 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 111 (464)
+.++..|+||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++.+++. +.+
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~ 97 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV----------NTK 97 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT----------TCC
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCC----------CCC
Confidence 34556666666666666666666666666665 4556666666666666666666666666666552 345
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHH
Q 038664 112 DEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAI 191 (464)
Q Consensus 112 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~ 191 (464)
+..|.||||+|+..++.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++++.++ +..+..|.||+++|+
T Consensus 98 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~ 175 (192)
T 2rfm_A 98 DFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASAR 175 (192)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHH
Confidence 55666666666666666666666666555 3445555556666666555555555555555554 444555555555555
Q ss_pred HcCCHHHHHHHHHh
Q 038664 192 IKSNFVVMAKILEA 205 (464)
Q Consensus 192 ~~~~~~~~~~ll~~ 205 (464)
..++.+++++|++.
T Consensus 176 ~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 176 IFGRQEVIKIFTEV 189 (192)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhCcHHHHHHHHhc
Confidence 55555555555543
No 62
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.3e-29 Score=227.40 Aligned_cols=191 Identities=19% Similarity=0.210 Sum_probs=105.9
Q ss_pred CCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCc
Q 038664 72 SETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQS 151 (464)
Q Consensus 72 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 151 (464)
+.+++|.|+..|+.+.++.+++.+.+ ..++.+|..|.||||+|+..|+.+++++|++.++...+..+..|.|
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~--------~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t 147 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLD--------YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYS 147 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHH--------HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHh--------hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCC
Confidence 34566777777777777776654432 1255666667777777777777777777777666435556666666
Q ss_pred HHHHHH-----HcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHH
Q 038664 152 PLSLAI-----DAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAA 226 (464)
Q Consensus 152 ~l~~A~-----~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~ 226 (464)
||++|+ ..++.+++++|++.+... +..+..|.||||+|+..|+.+++++|++.+++ ++..|.+|+||||+|+.
T Consensus 148 pL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~ 225 (276)
T 4hbd_A 148 PIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACE 225 (276)
T ss_dssp HHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHH
Confidence 666666 345555555555555443 44444455555555555555555555555444 44445555555555555
Q ss_pred cCCHHHHHHHhh-cCCCccccccCCCCCcccccccCCcHHHHHHHHHH
Q 038664 227 LGHFEIACRLSD-EDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHS 273 (464)
Q Consensus 227 ~~~~~~v~~Ll~-~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 273 (464)
.|+.+++++|++ .|++++ .+|..|.||||+|+..|+.+++++|+++
T Consensus 226 ~g~~~iv~~Ll~~~gad~~-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 226 HGHKEIAGLLLAVPSCDIS-LTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp HTCHHHHHHHHTSTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCc-CcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 555555555554 344433 3444444444444444444444444444
No 63
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=2.9e-28 Score=201.76 Aligned_cols=159 Identities=13% Similarity=0.121 Sum_probs=126.5
Q ss_pred CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCC
Q 038664 37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN 116 (464)
Q Consensus 37 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~ 116 (464)
.|.||||.|+..|+.+++++|++.+++ ++.++..|.||||+|+..|+.+++++|++.+++. +..+..|.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~ 70 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP----------QLLGKGRE 70 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTCC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC----------CCcCCCCC
Confidence 467888888888888888888888877 6778888888888888888888888888887764 35677788
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCH
Q 038664 117 TPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNF 196 (464)
Q Consensus 117 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~ 196 (464)
||||+|+..++.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++++.++ +..+..|.||+++|+..++.
T Consensus 71 t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~ 148 (167)
T 3v31_A 71 SALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYR 148 (167)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcH
Confidence 888888888888888888888777 4566777888888888888888888888877776 66777777788877777777
Q ss_pred HHHHHHHHhCch
Q 038664 197 VVMAKILEAKRD 208 (464)
Q Consensus 197 ~~~~~ll~~~~~ 208 (464)
+++++|++++..
T Consensus 149 ~~~~~L~~~~~~ 160 (167)
T 3v31_A 149 SVQQVIESHLLK 160 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 64
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=6.7e-31 Score=228.61 Aligned_cols=200 Identities=16% Similarity=0.098 Sum_probs=133.0
Q ss_pred HHHHHhCCccc--cccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchh
Q 038664 132 FTMIRKDPELI--CYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDL 209 (464)
Q Consensus 132 ~~Ll~~~~~~~--~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~ 209 (464)
+.|++++++.. ...+..+.|||+.|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.+.+
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~- 79 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN- 79 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence 45566655432 233445566777788888888888888777765 67777777888888888888888888777766
Q ss_pred hhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCccccc--ccCCcHHHHHHHHHHCCCcccccccCCCc
Q 038664 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLA--SENGKLSLLKRLLHSYPDSIEFLDKKNRN 287 (464)
Q Consensus 210 ~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 287 (464)
++..|..|+||||+|+..|+.+++++|++.|++++...+..|+||||+| +..|+.+++++|++.+++ ++..|..|.+
T Consensus 80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~ 158 (229)
T 2vge_A 80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVY 158 (229)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEE
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchH
Confidence 6777777888888888888888888888777777643345777888877 777777888887777776 4777777777
Q ss_pred hhHHHHhcCchHHHHHHhcCcchhhh--hhccCCCCCcHHHHHHHcCCchHHHHH
Q 038664 288 ILHLAAQNGHANVVVFISKLPEIEDM--INSSDLEGNTPLHLAAINNHFNIVLIL 340 (464)
Q Consensus 288 ~L~~A~~~~~~~~~~~L~~~~~~~~~--~~~~d~~g~t~Lh~A~~~~~~~~v~~L 340 (464)
+++.++..+.. ++|++. +++ ++.+|..|+||||+|++.|+.++|+.+
T Consensus 159 ~l~~~~~~~~~---~~ll~~---ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 159 ALWDYSAEFGD---ELSFRE---GESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp ESSCBCCSSTT---BCCBCT---TCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred HHHHHhhcccc---ccCccc---cccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 77755444332 233333 333 556666677777777777766666543
No 65
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=1.2e-28 Score=204.04 Aligned_cols=159 Identities=19% Similarity=0.193 Sum_probs=133.5
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccC
Q 038664 182 NDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASEN 261 (464)
Q Consensus 182 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 261 (464)
.|.||||.|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++++ ..+..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHc
Confidence 467888888888888888888888766 77788888888888888888888888888888776 5777888888888888
Q ss_pred CcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHH
Q 038664 262 GKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILA 341 (464)
Q Consensus 262 g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll 341 (464)
|+.+++++|++++++ ++.+|..|.||||+|+..++.+++++|++. +++++.+|..|.||||+|+..|+.+++++|+
T Consensus 80 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 80 GYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLES---GADPTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp TCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 888888888888887 488888889999999999999999988886 6778888888999999999999999999888
Q ss_pred hccccc
Q 038664 342 RNMRVN 347 (464)
Q Consensus 342 ~~~~~d 347 (464)
++ +.+
T Consensus 156 ~~-~~~ 160 (167)
T 3v31_A 156 SH-LLK 160 (167)
T ss_dssp HH-HHH
T ss_pred HH-HHH
Confidence 65 443
No 66
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=3.1e-28 Score=206.55 Aligned_cols=163 Identities=20% Similarity=0.224 Sum_probs=131.4
Q ss_pred ccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc
Q 038664 65 VSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICY 144 (464)
Q Consensus 65 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~ 144 (464)
++.+|..|.||||+|+..|+.+++++|++.+++. +..+..|.||||+|+..++.+++++|++.+++ ++.
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~ 96 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL----------EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNT 96 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTC
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc----------ccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCC
Confidence 5567888999999999999999999999888763 46778889999999999999999999988877 456
Q ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHH
Q 038664 145 INKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYA 224 (464)
Q Consensus 145 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a 224 (464)
.+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|++.+.+ ++..|..|.||||+|
T Consensus 97 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A 174 (192)
T 2rfm_A 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASA 174 (192)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHH
T ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHH
Confidence 7778888888888888888888888887776 67777777787777777777777777777766 677777777777777
Q ss_pred HHcCCHHHHHHHhhcC
Q 038664 225 AALGHFEIACRLSDED 240 (464)
Q Consensus 225 ~~~~~~~~v~~Ll~~~ 240 (464)
+..|+.+++++|++.+
T Consensus 175 ~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 175 RIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHhcc
Confidence 7777777777777653
No 67
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=2.4e-28 Score=201.29 Aligned_cols=158 Identities=20% Similarity=0.223 Sum_probs=111.9
Q ss_pred CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCC
Q 038664 37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN 116 (464)
Q Consensus 37 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~ 116 (464)
...||||.|+..|+.+++++|++.+++ ++..+..|.||||+|+. |+.+++++|++.+++. +.++..|.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~----------~~~~~~g~ 71 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP----------DLKDRTGF 71 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT----------TCCCTTSC
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC----------CCCCCCCC
Confidence 345788888888888888888887777 56777788888888877 8888888888877663 35677777
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCH
Q 038664 117 TPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNF 196 (464)
Q Consensus 117 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~ 196 (464)
||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++++.+..+..+..|.||||+|+..++.
T Consensus 72 t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~ 150 (162)
T 1ihb_A 72 AVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150 (162)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 777777777777777777777766 3455666777777777777777777777666654455555666666666666666
Q ss_pred HHHHHHHHhCc
Q 038664 197 VVMAKILEAKR 207 (464)
Q Consensus 197 ~~~~~ll~~~~ 207 (464)
+++++|+++++
T Consensus 151 ~~~~~Ll~~GA 161 (162)
T 1ihb_A 151 EVVSLMQANGA 161 (162)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHhCC
Confidence 66666665553
No 68
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=1.1e-27 Score=198.70 Aligned_cols=157 Identities=22% Similarity=0.279 Sum_probs=98.5
Q ss_pred CCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCC
Q 038664 36 QNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEG 115 (464)
Q Consensus 36 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g 115 (464)
..+.++||+||..|+.++|++|++++++ ++.++..|.||||+|+..|+.+++++|++.+++. +..+..|
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g 80 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV----------NAVDHAG 80 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTS
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CccCCCC
Confidence 3445666666666666666666666665 4556666666666666666666666666665552 2455666
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCC
Q 038664 116 NTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSN 195 (464)
Q Consensus 116 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~ 195 (464)
.||||+|+..|+.+++++|++.+++ .+..+..|.||||+|+..|+.+++++|++++.++ +..+..|.|||++|+..++
T Consensus 81 ~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~ 158 (169)
T 2y1l_E 81 MTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGN 158 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCC
Confidence 6666666666666666666666655 3455566666666666666666666666666655 5556666666666666666
Q ss_pred HHHHHHHHHh
Q 038664 196 FVVMAKILEA 205 (464)
Q Consensus 196 ~~~~~~ll~~ 205 (464)
.+++++|++.
T Consensus 159 ~~~~~~L~~~ 168 (169)
T 2y1l_E 159 EDLAEILQKL 168 (169)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHc
Confidence 6666666553
No 69
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=8.9e-28 Score=199.14 Aligned_cols=156 Identities=25% Similarity=0.362 Sum_probs=119.4
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664 4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG 83 (464)
Q Consensus 4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g 83 (464)
..+.|+.|++.|+.+.++.+++. +.+++..+..|.||||+|+..|+.+++++|++++++ ++..+..|.||||+|+..|
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred ccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcC
Confidence 34677888888888888777765 347777777788888888888888888888888777 6667777888888888888
Q ss_pred CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664 84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH 163 (464)
Q Consensus 84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~ 163 (464)
+.+++++|++.+++. +.++..|.||||+|+..++.+++++|++.+++ .+..|..|.||+++|+..|+.+
T Consensus 92 ~~~~~~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~ 160 (169)
T 2y1l_E 92 HLEIVEVLLKNGADV----------NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNED 160 (169)
T ss_dssp CHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHH
T ss_pred CHHHHHHHHHcCCCC----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHH
Confidence 888888888877763 36677788888888888888888888888777 4566777888888888888888
Q ss_pred HHHHHHHhc
Q 038664 164 IACCIIKEK 172 (464)
Q Consensus 164 ~~~~Ll~~~ 172 (464)
++++|++.|
T Consensus 161 ~~~~L~~~G 169 (169)
T 2y1l_E 161 LAEILQKLN 169 (169)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHcC
Confidence 888877653
No 70
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=9.8e-29 Score=207.07 Aligned_cols=161 Identities=21% Similarity=0.259 Sum_probs=96.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhc
Q 038664 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQN 295 (464)
Q Consensus 216 ~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~ 295 (464)
++.++||.|+..|+.+++++|++.+.......+..|+||||+|+..|+.+++++|++.+.+ ++..|..|+||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 3455666666666666666666654433334555666666666666666666666666555 356666666666666666
Q ss_pred CchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhH--HHh
Q 038664 296 GHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQND--ILE 373 (464)
Q Consensus 296 ~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~--~l~ 373 (464)
++.+++++|++. +.+++.+|..|+||||+|+..++.+++++|+++ |++++.+|..|+||+++|...++... ++.
T Consensus 83 ~~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 83 GHRDIVQKLLQY---KADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp TCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 666666666655 455666666666666666666666666666654 66666666666666666665544433 355
Q ss_pred hcCCCCCC
Q 038664 374 GHGGSASG 381 (464)
Q Consensus 374 ~~g~~~~~ 381 (464)
.+|+.+..
T Consensus 159 ~~g~~~~~ 166 (179)
T 3f6q_A 159 KMGQNLNR 166 (179)
T ss_dssp HTTCCCSC
T ss_pred HhhcCccc
Confidence 55555443
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=6.6e-28 Score=199.22 Aligned_cols=156 Identities=26% Similarity=0.362 Sum_probs=110.8
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664 4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG 83 (464)
Q Consensus 4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g 83 (464)
..++|+.|++.|+.+.++.+++..+.+++..+..|.||||+|+..|+.+++++|++++++ ++.++..|.||||+|+..|
T Consensus 8 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 86 (165)
T 3twr_A 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYG 86 (165)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred hhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHcC
Confidence 356777777777777777777766656666666777777777777777777777777776 5667777777777777777
Q ss_pred CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664 84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH 163 (464)
Q Consensus 84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~ 163 (464)
+.+++++|++.+++. +.+|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||+++|.. ++.+
T Consensus 87 ~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~ 154 (165)
T 3twr_A 87 HYEVAELLVKHGAVV----------NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTD 154 (165)
T ss_dssp CHHHHHHHHHTTCCT----------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHH
T ss_pred cHHHHHHHHhCCCCC----------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChH
Confidence 777777777777663 35666777777777777777777777777766 45666777777777655 6677
Q ss_pred HHHHHHHhc
Q 038664 164 IACCIIKEK 172 (464)
Q Consensus 164 ~~~~Ll~~~ 172 (464)
++++|++.+
T Consensus 155 i~~~L~~~g 163 (165)
T 3twr_A 155 IQDLLRGDA 163 (165)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 777776654
No 72
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=3.2e-30 Score=224.30 Aligned_cols=197 Identities=13% Similarity=0.110 Sum_probs=165.5
Q ss_pred HHHHHHhcCcC--cCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCC
Q 038664 165 ACCIIKEKLSV--LDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDT 242 (464)
Q Consensus 165 ~~~Ll~~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~ 242 (464)
++.|++.+.++ .+..+..+.||||.|+..|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++.|++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 35677777665 234455677889999999999999999999987 899999999999999999999999999999999
Q ss_pred ccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccc-cCCCchhHHH--HhcCchHHHHHHhcCcchhhhhhccCC
Q 038664 243 LAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLD-KKNRNILHLA--AQNGHANVVVFISKLPEIEDMINSSDL 319 (464)
Q Consensus 243 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~L~~A--~~~~~~~~~~~L~~~~~~~~~~~~~d~ 319 (464)
++ .+|..|+||||+|+..|+.+++++|++.+++. +..+ ..|+||||+| +..++.+++++|++. +++++.+|.
T Consensus 80 ~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~---ga~~~~~~~ 154 (229)
T 2vge_A 80 VN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADV---EQSMGLMNS 154 (229)
T ss_dssp TT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH---HHHTTTSGG
T ss_pred CC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHc---CCCcccccC
Confidence 88 68889999999999999999999999999985 7765 6999999999 999999999999987 788999999
Q ss_pred CCCcHHHHHHHcCCchHHHHHHhccccc--cccccccCCChHHhhccCchhhHH
Q 038664 320 EGNTPLHLAAINNHFNIVLILARNMRVN--IRATNEKKQTALAIVQPSLHQNDI 371 (464)
Q Consensus 320 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d--~~~~n~~g~t~l~~a~~~~~~~~~ 371 (464)
.|.||+|.++.... .++|++. |++ ++.+|..|+|||++|+..++.+.+
T Consensus 155 ~~~~~l~~~~~~~~---~~~ll~~-ga~~~~~~~d~~G~TpL~~A~~~g~~~~v 204 (229)
T 2vge_A 155 GAVYALWDYSAEFG---DELSFRE-GESVTVLRRDGPEETDWWWAALHGQEGYV 204 (229)
T ss_dssp GEEEESSCBCCSST---TBCCBCT-TCEEEEEESSCTTCSSEEEEEETTEEEEE
T ss_pred CchHHHHHHhhccc---cccCccc-cccccccccCCCcccHHHHHHHcCCccee
Confidence 99999997655543 3556654 777 788999999999999998887654
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=7.2e-28 Score=201.76 Aligned_cols=159 Identities=23% Similarity=0.263 Sum_probs=110.6
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC
Q 038664 5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN 84 (464)
Q Consensus 5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~ 84 (464)
.++|+.|++.|+.+.++.+++..+.+++..+..|.||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+
T Consensus 6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCC
Confidence 34567777777777777777766666666677777777777777777777777777766 56666777777777777777
Q ss_pred HHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHH
Q 038664 85 FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI 164 (464)
Q Consensus 85 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~ 164 (464)
.+++++|++.+++. +.+|..|.||||+|+..++.+++++|++.+++ ++..+..|.||+++|+..++.++
T Consensus 85 ~~~v~~Ll~~g~~~----------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~ 153 (179)
T 3f6q_A 85 RDIVQKLLQYKADI----------NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELL 153 (179)
T ss_dssp HHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHH
T ss_pred HHHHHHHHHcCCCC----------CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHH
Confidence 77777777776663 35666777777777777777777777777666 35566677777777777777777
Q ss_pred HHHHHHhcCcC
Q 038664 165 ACCIIKEKLSV 175 (464)
Q Consensus 165 ~~~Ll~~~~~~ 175 (464)
+++|++.+.++
T Consensus 154 ~~~L~~~g~~~ 164 (179)
T 3f6q_A 154 RERAEKMGQNL 164 (179)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHhhcCc
Confidence 77777766665
No 74
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=4.3e-27 Score=191.59 Aligned_cols=150 Identities=20% Similarity=0.289 Sum_probs=96.7
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC
Q 038664 5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN 84 (464)
Q Consensus 5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~ 84 (464)
.++|+.|++.|+.+.++.+++.+. +++ .+..|.||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~-~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGA-PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTC-CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCC-CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCh
Confidence 456666677777776666665543 333 455666677777776777777777666666 55566666677777766666
Q ss_pred HHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHH
Q 038664 85 FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI 164 (464)
Q Consensus 85 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~ 164 (464)
.+++++|++++++. +.++..|.||||+|+..|+.+++++|++.+++ ++..+..|.||+++|+..|+.++
T Consensus 80 ~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i 148 (153)
T 1awc_B 80 ANIVEVLLKHGADV----------NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDL 148 (153)
T ss_dssp HHHHHHHHTTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcCCCC----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHH
Confidence 66677666666553 35566666666666666666666666666665 34556666666666666666666
Q ss_pred HHHH
Q 038664 165 ACCI 168 (464)
Q Consensus 165 ~~~L 168 (464)
+++|
T Consensus 149 ~~~L 152 (153)
T 1awc_B 149 AEIL 152 (153)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=4e-27 Score=192.56 Aligned_cols=153 Identities=23% Similarity=0.330 Sum_probs=126.8
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC
Q 038664 5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN 84 (464)
Q Consensus 5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~ 84 (464)
.++|+.|++.|+.+.++.+++..+.+++..+..|.||||+ +..|+.+++++|++.|++ ++.++..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCc
Confidence 4678888888888888888887555777788888888888 888888888888888887 67788888888888888888
Q ss_pred HHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHH
Q 038664 85 FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI 164 (464)
Q Consensus 85 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~ 164 (464)
.+++++|++.+++.+ .+|..|.||||+|+..|+.+++++|++. ++ .+..+..|.|||++|+..|+.++
T Consensus 81 ~~~v~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~ 148 (156)
T 1bd8_A 81 LDTLKVLVEHGADVN----------VPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDL 148 (156)
T ss_dssp HHHHHHHHHTTCCSC----------CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHH
T ss_pred HHHHHHHHHcCCCCC----------CcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHH
Confidence 888888888887743 6777888888888888888888888888 55 56677888888888888888888
Q ss_pred HHHHHHh
Q 038664 165 ACCIIKE 171 (464)
Q Consensus 165 ~~~Ll~~ 171 (464)
+++|+++
T Consensus 149 v~~Ll~~ 155 (156)
T 1bd8_A 149 VDILQGH 155 (156)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 8888764
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=6.7e-28 Score=197.22 Aligned_cols=153 Identities=27% Similarity=0.339 Sum_probs=124.6
Q ss_pred CCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCc
Q 038664 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGK 263 (464)
Q Consensus 184 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 263 (464)
.++|+.|+..|+.+++++|++..+..++..+..|.||||+ +..|+.+++++|++.|++++ .++..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCc
Confidence 4678888888888888888877433467778888888888 88888888888888888776 577788888888888888
Q ss_pred HHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhc
Q 038664 264 LSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARN 343 (464)
Q Consensus 264 ~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 343 (464)
.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++. .+++.+|..|+||||+|++.|+.+++++|+++
T Consensus 81 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 81 LDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE----SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT----SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc----cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 8888888888877 488888888888888888888888888876 56778888888888888888888888888854
No 77
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=5.8e-27 Score=190.84 Aligned_cols=151 Identities=18% Similarity=0.242 Sum_probs=124.1
Q ss_pred CCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCc
Q 038664 38 RDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNT 117 (464)
Q Consensus 38 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t 117 (464)
..|+||.|+..|+.+++++|++.+++. + .+..|.||||+|+..|+.+++++|++.+++. +.++..|.|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t 69 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR----------DARTKVDRT 69 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT----------TCCCTTCCC
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CCCCCCCCC
Confidence 358899999999999999999998873 3 5888999999999999999999999988774 467788899
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHH
Q 038664 118 PLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFV 197 (464)
Q Consensus 118 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 197 (464)
|||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++++.++ +..+..|.|||++|+..|+.+
T Consensus 70 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~ 147 (153)
T 1awc_B 70 PLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNED 147 (153)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHH
Confidence 99999999999999999988877 4566777888888888888888888888877776 666777777777777777777
Q ss_pred HHHHH
Q 038664 198 VMAKI 202 (464)
Q Consensus 198 ~~~~l 202 (464)
++++|
T Consensus 148 i~~~L 152 (153)
T 1awc_B 148 LAEIL 152 (153)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77665
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=2e-28 Score=215.11 Aligned_cols=186 Identities=13% Similarity=0.051 Sum_probs=134.7
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCccccccc
Q 038664 181 PNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASE 260 (464)
Q Consensus 181 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 260 (464)
..|.||||.|+..++.+.++.|++++.+ ++. +..+.||||.|+..|+.+++++|++.+++++ .+|..|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence 3578888888888888888888888876 443 4678999999999999999999999999877 688999999999999
Q ss_pred CCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCC-cHHHHH--HHcCCchHH
Q 038664 261 NGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGN-TPLHLA--AINNHFNIV 337 (464)
Q Consensus 261 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~~v 337 (464)
.|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++. +++++.++..|. ||||+| +..|+.+++
T Consensus 80 ~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVES---GAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence 9999999999999988 599999999999999999999999999988 788999998877 999999 788999999
Q ss_pred HHHHhccccccccc---------cccCCChHHhhccCchhhHHHhh
Q 038664 338 LILARNMRVNIRAT---------NEKKQTALAIVQPSLHQNDILEG 374 (464)
Q Consensus 338 ~~Ll~~~~~d~~~~---------n~~g~t~l~~a~~~~~~~~~l~~ 374 (464)
++|++. |++++.. +..++++.+++...+....++..
T Consensus 156 ~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i~vl~~ 200 (239)
T 1ycs_B 156 QFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHR 200 (239)
T ss_dssp HHHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCEEEECCC
T ss_pred HHHHHh-hhcccccccceEEEEeccCCCCCCcccccCCCEEEEEEe
Confidence 999976 8888876 45578888888876665444443
No 79
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=5.4e-27 Score=193.71 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=121.0
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHH
Q 038664 111 QDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIA 190 (464)
Q Consensus 111 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a 190 (464)
.+.++.|||+.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++++.++ +..+..|.||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence 45667788888888888888888887665555666777778888888888888888888877776 67777777888888
Q ss_pred HHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHH
Q 038664 191 IIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRL 270 (464)
Q Consensus 191 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 270 (464)
+..++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++. .++..|.||||+|+. |+.+++++|
T Consensus 83 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-KKNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred HHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCChhHhHhc-CChHHHHHH
Confidence 888888888888877776 67777777788888888778888888777777766 567777777777666 777777777
Q ss_pred HHHCC
Q 038664 271 LHSYP 275 (464)
Q Consensus 271 l~~~~ 275 (464)
+++++
T Consensus 160 ~~~gA 164 (165)
T 3twr_A 160 RGDAA 164 (165)
T ss_dssp HTC--
T ss_pred hhccc
Confidence 76553
No 80
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=1.3e-26 Score=189.30 Aligned_cols=147 Identities=19% Similarity=0.189 Sum_probs=117.6
Q ss_pred hhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCc-h
Q 038664 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRN-I 288 (464)
Q Consensus 210 ~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~ 288 (464)
....+..|.||||+|+..|+.+++++|+++|.+++ ..+..|+||||+|+ .|+.+++++|++++.+ ++.+|..|+| |
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttp 81 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRP 81 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCH
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHH
Confidence 34557889999999999999999999999999887 58889999999996 9999999999999988 5999999999 9
Q ss_pred hHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhc
Q 038664 289 LHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQ 363 (464)
Q Consensus 289 L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~ 363 (464)
||+|+..|+.+++++|++. +++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|.||.+-+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHARIDAAEGPS 152 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C------------------
T ss_pred HHHHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCcCcccccCC
Confidence 9999999999999999987 788999999999999999999999999999976 9999999999999987443
No 81
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=2e-26 Score=202.27 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=36.0
Q ss_pred CCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCc
Q 038664 38 RDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNT 117 (464)
Q Consensus 38 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t 117 (464)
|.||||.|+..|+.+.++.|+++|++ ++ .+..|.||||.|+..|+.+++++|++.+++. +.+|..|.|
T Consensus 5 g~t~L~~a~~~~~~~~~~~ll~~g~~-~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~----------~~~d~~g~t 72 (239)
T 1ycs_B 5 GQVSLPPGKRTNLRKTGSERIAHGMR-VK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP----------SLPNDEGIT 72 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC----------CCCCTTSCC
T ss_pred ccccCchhhhhhhHHHHHHHhccCCC-cc-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC----------CCcCCCCCC
Confidence 44444444444444444444444444 11 3333344444444444444444444444332 133344444
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhc
Q 038664 118 PLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEK 172 (464)
Q Consensus 118 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~ 172 (464)
|||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++++
T Consensus 73 ~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 126 (239)
T 1ycs_B 73 ALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESG 126 (239)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 44444444444444444444333 2233333333333333333333333333333
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=7.9e-26 Score=180.03 Aligned_cols=131 Identities=21% Similarity=0.253 Sum_probs=123.0
Q ss_pred hhhhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccC-CCch
Q 038664 210 INVLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKK-NRNI 288 (464)
Q Consensus 210 ~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g~t~ 288 (464)
++..+..|.||||+|+..|+.+++++|++++.+++ .++..|+||||+|+. |+.+++++|++++++ ++.+|.. |+||
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t~ 81 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTRP 81 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBCH
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCCH
Confidence 67788999999999999999999999999998887 688999999999999 999999999999998 5999999 9999
Q ss_pred hHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccc
Q 038664 289 LHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVN 347 (464)
Q Consensus 289 L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d 347 (464)
||+|+..|+.+++++|++. +++++.+|..|+||||+|++.++.+++++|+++ |+|
T Consensus 82 L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Gad 136 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRA---GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA-TGD 136 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHT---CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HCC
T ss_pred HHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence 9999999999999999987 688999999999999999999999999999976 765
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=1.7e-25 Score=178.15 Aligned_cols=134 Identities=23% Similarity=0.270 Sum_probs=120.8
Q ss_pred CCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHH
Q 038664 28 GNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDI 107 (464)
Q Consensus 28 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 107 (464)
+.+++..+..|.||||+|+..|+.+++++|++++++ ++.++..|.||||+|+. |+.+++++|++++++.+
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-------- 71 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-------- 71 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS--------
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC--------
Confidence 357778889999999999999999999999999988 78889999999999999 99999999999988844
Q ss_pred HhhcCCC-CCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 038664 108 LRKQDEE-GNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLS 174 (464)
Q Consensus 108 ~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~ 174 (464)
.++.. |.||||+|+..|+.+++++|++.+++ ++..+..|.|||++|+..++.+++++|+++|++
T Consensus 72 --~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 72 --CADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp --CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred --CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 67888 89999999999999999999999988 567788999999999999999999999988763
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=3e-26 Score=191.85 Aligned_cols=160 Identities=13% Similarity=0.038 Sum_probs=122.0
Q ss_pred CCHHHHHHHcCCHHHHHHHHHhCchhhhhhc-CCCCcHHHHHHHcCCH----HHHHHHhhcCCCccccccCCCCCccccc
Q 038664 184 LTLLHIAIIKSNFVVMAKILEAKRDLINVLD-KRDRNPLHYAAALGHF----EIACRLSDEDDTLAYERDCNGQSPLHLA 258 (464)
Q Consensus 184 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~L~~a~~~~~~----~~v~~Ll~~~~~~~~~~~~~g~tpL~~A 258 (464)
.++++.|++.|+.+.++.++..+.. ..+ ..|+||||+|+..++. +++++|+++|++++ .++..|+||||+|
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpLh~a 82 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRTKEGTTLFFPL 82 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCCTTCCCTHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCCCCCCcHHHHH
Confidence 4667777888888877777776643 233 6688888888888764 47888888888877 5778888888888
Q ss_pred ccCCc------HHHHHHHHHHCCCcccccccCCC-chhHHHHhcCc-----hHHHHHHhc-CcchhhhhhccCCCCCcHH
Q 038664 259 SENGK------LSLLKRLLHSYPDSIEFLDKKNR-NILHLAAQNGH-----ANVVVFISK-LPEIEDMINSSDLEGNTPL 325 (464)
Q Consensus 259 ~~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-t~L~~A~~~~~-----~~~~~~L~~-~~~~~~~~~~~d~~g~t~L 325 (464)
+..|+ .+++++|+++|++ ++.+|..|+ ||||+|+..+. .+++++|++ . |++++.+|..|.|||
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~---gad~~~~d~~G~TpL 158 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS---GLQLLIKDKWGLTAL 158 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST---TCCTTCCCTTSCCHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc---CCCCcccCCCCCCHH
Confidence 87775 5788888888887 588888888 88888888443 457788877 5 678888888888888
Q ss_pred HHHHHcCCchHHHHHHhcccccccccc
Q 038664 326 HLAAINNHFNIVLILARNMRVNIRATN 352 (464)
Q Consensus 326 h~A~~~~~~~~v~~Ll~~~~~d~~~~n 352 (464)
|+|++.++.+++++|... ..+.+.++
T Consensus 159 ~~A~~~~~~~~v~~L~~~-~~~~~~~~ 184 (186)
T 3t8k_A 159 EFVKRCQKPIALKMMEDY-IKKYNLKE 184 (186)
T ss_dssp HHHHTTTCHHHHHHHHHH-HHHHTCCC
T ss_pred HHHHHcCCHHHHHHHHHH-HHHHhccc
Confidence 888888888888888854 44455444
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=1.7e-25 Score=187.30 Aligned_cols=154 Identities=12% Similarity=0.033 Sum_probs=131.8
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCCccccc-CCCCchhHHHHhcCCH----HHHHHHHHhCCccccccccCCCCHHHHHH
Q 038664 6 RVLFRALRRGDAATVRESARLNGNGILDMS-QNRDTALHIAARFGHK----NVVMEILELRPDLVSVENHKSETPMHVAA 80 (464)
Q Consensus 6 ~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 80 (464)
+.|+.|++.|+.+.++.++..+ ++..+ ..|+||||+|+..|+. +++++|+++|++ ++.++..|+||||+|+
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPLF 83 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHH
Confidence 5799999999999999999764 34444 6799999999999985 599999999999 8889999999999999
Q ss_pred HhCC------HHHHHHHhcccCCCCCCcchHHHHhhcCCCCC-cHHHHHHHcC-----CHHHHHHHHH-hCCcccccccc
Q 038664 81 RAGN------FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN-TPLHNAVRKC-----DGKMAFTMIR-KDPELICYINK 147 (464)
Q Consensus 81 ~~g~------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~-----~~~~~~~Ll~-~~~~~~~~~~~ 147 (464)
..|+ .+++++|+++|++.+ .+|..|. ||||+|+..+ +.+++++|++ .|++ ++.+|.
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadin----------~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~~~~d~ 152 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADIT----------ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDK 152 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCSS----------SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-TTCCCT
T ss_pred HcCCcchhhHHHHHHHHHHCCCCCC----------ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-CcccCC
Confidence 9987 578999999999854 7889999 9999999844 3568888988 7877 577888
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 038664 148 AGQSPLSLAIDAGLTHIACCIIKEKLS 174 (464)
Q Consensus 148 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~ 174 (464)
.|.|||++|++.|+.+++++|.+....
T Consensus 153 ~G~TpL~~A~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 153 WGLTALEFVKRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp TSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999998988888888876543
No 86
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=1.2e-24 Score=177.51 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=105.3
Q ss_pred cccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcC
Q 038664 33 DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQD 112 (464)
Q Consensus 33 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 112 (464)
..+..|.||||+|+..|+.++|++|+++|++ ++..+..|.||||+|+ .|+.+++++|++.+++. +.++
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~----------~~~d 74 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP----------NCAD 74 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC----------CCCC
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC----------CCcC
Confidence 4567788999999999999999999998887 7778888999999885 88899999999888774 3677
Q ss_pred CCCCc-HHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHH
Q 038664 113 EEGNT-PLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLH 188 (464)
Q Consensus 113 ~~g~t-~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~ 188 (464)
..|.| |||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++++.++ +..+..|.++.+
T Consensus 75 ~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~ 149 (156)
T 1bi7_B 75 PATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAE 149 (156)
T ss_dssp TTTCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred CCCCcHHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccc
Confidence 88888 88888888888888888888877 4567788888888888888888888888888776 666777776655
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=1.9e-23 Score=163.89 Aligned_cols=126 Identities=31% Similarity=0.499 Sum_probs=108.1
Q ss_pred CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCC
Q 038664 37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN 116 (464)
Q Consensus 37 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~ 116 (464)
+|+||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++.+++. +.++..|.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------~~~~~~g~ 69 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV----------NAKDKNGR 69 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT----------TCCCTTSC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC----------cccCCCCC
Confidence 478999999999999999999999888 6778888999999999999999999999888773 46778889
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCc
Q 038664 117 TPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLS 174 (464)
Q Consensus 117 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~ 174 (464)
||||+|+..++.+++++|++.+++ .+..+..|.|||++|+..|+.+++++|+++|++
T Consensus 70 t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 70 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred cHHHHHHHcChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999999988877 456778888888888888888888888887753
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=7.3e-24 Score=168.61 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=104.2
Q ss_pred ccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCC
Q 038664 34 MSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDE 113 (464)
Q Consensus 34 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 113 (464)
....+.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.+++. +.+|.
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~d~ 78 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV----------NAVDA 78 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT----------TCCCT
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CcCCC
Confidence 445677889999999999999999888887 6778888889999998888888999888887773 46778
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhc
Q 038664 114 EGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEK 172 (464)
Q Consensus 114 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~ 172 (464)
.|.||||+|+..++.+++++|++.+++ .+..|..|.|||++|+..|+.+++++|++.|
T Consensus 79 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 79 IGFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 888888888888888888888888877 4567788888888888888888888888754
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=8.1e-24 Score=166.08 Aligned_cols=126 Identities=41% Similarity=0.630 Sum_probs=108.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhc
Q 038664 216 RDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQN 295 (464)
Q Consensus 216 ~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~ 295 (464)
+|+||||+|++.|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHc
Confidence 47888888888888888888888888776 5777888899999888899999999888877 488888899999999999
Q ss_pred CchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccc
Q 038664 296 GHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVN 347 (464)
Q Consensus 296 ~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d 347 (464)
++.+++++|++. +.+++.+|..|+||||+|+..++.+++++|+++ |+|
T Consensus 79 ~~~~~~~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAY 126 (126)
T ss_dssp TCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCC
T ss_pred ChHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence 999999999887 677888899999999999999999999999975 764
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=7.6e-23 Score=162.69 Aligned_cols=123 Identities=23% Similarity=0.326 Sum_probs=113.6
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhC
Q 038664 4 VARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAG 83 (464)
Q Consensus 4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g 83 (464)
..++|+.|++.|+.+.++.+++. +.+++..+..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIG 91 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred ccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcC
Confidence 45789999999999999998876 458898999999999999999999999999999998 7889999999999999999
Q ss_pred CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 038664 84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKD 138 (464)
Q Consensus 84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~ 138 (464)
+.+++++|++++++. +.+|..|.||||+|+..++.+++++|++.|
T Consensus 92 ~~~~v~~Ll~~g~~~----------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 92 HLEIAEVLLKHGADV----------NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHHHcCCCC----------cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999998874 478899999999999999999999999864
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=1.2e-23 Score=167.72 Aligned_cols=121 Identities=25% Similarity=0.338 Sum_probs=107.5
Q ss_pred cccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHH
Q 038664 246 ERDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPL 325 (464)
Q Consensus 246 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~L 325 (464)
.++..|+||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|++. +.+++.+|..|+|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQH---KALVNTTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCcccCcCCCCCCHH
Confidence 3677888999999999999999999988877 488889999999999999999999999887 678899999999999
Q ss_pred HHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCchhhHH
Q 038664 326 HLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLHQNDI 371 (464)
Q Consensus 326 h~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~~~~~ 371 (464)
|+|++.++.+++++|++. |++++.+|..|+||+++|...+..+.+
T Consensus 81 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~l 125 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDDESMKSLL 125 (137)
T ss_dssp HHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhccHHHHH
Confidence 999999999999999976 999999999999999999977666554
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=1.1e-23 Score=167.80 Aligned_cols=129 Identities=20% Similarity=0.274 Sum_probs=110.6
Q ss_pred cccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcC
Q 038664 33 DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQD 112 (464)
Q Consensus 33 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 112 (464)
.++..|.||||+|+..|+.+++++|++.+++ ++.++..|.||||+|+..|+.+++++|++.+++. +.++
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------~~~~ 73 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV----------NTTG 73 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc----------cCcC
Confidence 5778899999999999999999999999988 7788999999999999999999999999988874 4678
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcC
Q 038664 113 EEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKL 173 (464)
Q Consensus 113 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~ 173 (464)
..|.||||+|+..++.+++++|++.+++ .+..|..|.||+++|+..+..++++++.+...
T Consensus 74 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 74 YQNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp GGGCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 8899999999999999999999999888 46788899999999988888887777665443
No 93
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=5.4e-23 Score=160.49 Aligned_cols=115 Identities=22% Similarity=0.216 Sum_probs=100.8
Q ss_pred cCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHH
Q 038664 248 DCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHL 327 (464)
Q Consensus 248 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~ 327 (464)
+..|.||||.|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|++. +.+++.+|..|+||||+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLS 79 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCcCCCCCCCHHHH
Confidence 45677899999999999999999998887 588899999999999999999999999987 67889999999999999
Q ss_pred HHHcCCchHHHHHHhccccccccccccCCChHHhhccCch
Q 038664 328 AAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLH 367 (464)
Q Consensus 328 A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~ 367 (464)
|+..++.+++++|+++ |++++.+|..|+||+++|...+.
T Consensus 80 A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~ 118 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDNQAI 118 (123)
T ss_dssp HHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCCHHH
T ss_pred HHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHhCCHHH
Confidence 9999999999999976 99999999999999999974433
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=1e-22 Score=170.88 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=106.6
Q ss_pred cCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcC-C
Q 038664 35 SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQD-E 113 (464)
Q Consensus 35 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-~ 113 (464)
+..|.||||+|+..|+.+++++|++ +.+ ++.+|..|.||||+|+..|+.+++++|++++++.+ .++ .
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~ 108 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD----------HRDMR 108 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCSS
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------cCCCC
Confidence 4567888888888888888888888 666 67788888888888888888888888888887743 455 7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHc
Q 038664 114 EGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIK 193 (464)
Q Consensus 114 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~ 193 (464)
.|.||||+|+..|+.+++++|++.+++ ++..|..|.|||++|+..++. ..+.++|++|+..
T Consensus 109 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~ 169 (183)
T 3deo_A 109 GGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRI 169 (183)
T ss_dssp SSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHH
T ss_pred CCCCHHHHHHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHc
Confidence 788888888888888888888888877 456778888888888764311 2345677777777
Q ss_pred CCHHHHHHHHH
Q 038664 194 SNFVVMAKILE 204 (464)
Q Consensus 194 ~~~~~~~~ll~ 204 (464)
|..++++.|.+
T Consensus 170 ~~~~i~~~L~~ 180 (183)
T 3deo_A 170 GLEKVINVLEG 180 (183)
T ss_dssp HHHHHHHHHHT
T ss_pred CHHHHHHHHHH
Confidence 77777666654
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=181.75 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=113.5
Q ss_pred ccCCCCchhHHHHhcCCHHHHHHHHHhCCccccc------cccCCCCHHHHHHHh---CCHHHHHHHhcccCCCCCCcch
Q 038664 34 MSQNRDTALHIAARFGHKNVVMEILELRPDLVSV------ENHKSETPMHVAARA---GNFGVAKIFMRPHGNGNNTGTF 104 (464)
Q Consensus 34 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~ 104 (464)
......++||.|+..|+.+.++.|++.+++ ++. .+..|.||||+|+.. |+.+++++|++.+++.
T Consensus 147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv------ 219 (301)
T 2b0o_E 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL------ 219 (301)
T ss_dssp CCC-CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT------
T ss_pred ccCchHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC------
Confidence 344566889999999999999999988888 444 578888999999987 7889999999988873
Q ss_pred HHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCC
Q 038664 105 DDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDL 184 (464)
Q Consensus 105 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~ 184 (464)
+.+|..|.||||+|+..|+.+++++|++.|++ ++..|..|.|||++|+..|+.+++++|++.+.+ .+.
T Consensus 220 ----n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~ 287 (301)
T 2b0o_E 220 ----DAKAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFA 287 (301)
T ss_dssp ----TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTS
T ss_pred ----CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCC
Confidence 46788899999999999999999999998888 467888899999999999999999999988876 367
Q ss_pred CHHHHHHHcCCH
Q 038664 185 TLLHIAIIKSNF 196 (464)
Q Consensus 185 ~~l~~a~~~~~~ 196 (464)
||||+|+..|+.
T Consensus 288 tpLh~A~~~g~~ 299 (301)
T 2b0o_E 288 FPLHVDYSWVIS 299 (301)
T ss_dssp SCCC--------
T ss_pred ChhHHHHhcCCc
Confidence 899999887754
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=1.4e-23 Score=184.51 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=79.6
Q ss_pred cCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCC
Q 038664 70 HKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAG 149 (464)
Q Consensus 70 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g 149 (464)
..|.||||+|+..|+.+++++|++ +++ ++.+|..|.||||+|+..|+.+++++|++.++++....+..|
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~----------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g 111 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRD----------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 111 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCC----------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCC----------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCC
Confidence 345566666666666666666655 443 234555556666666666666666666665555322222555
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCCHHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCC
Q 038664 150 QSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSNFVVMAKILEAKRDLINVLDKRDRNPLHYAAALGH 229 (464)
Q Consensus 150 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~ 229 (464)
.||||+|+..|+.+++++|++++.++ +..+..|.||||+|+..+ ....+.||||+|+..|+
T Consensus 112 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~g~ 172 (244)
T 3ui2_A 112 LTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREIL------------------KTTPKGNPMQFGRRIGL 172 (244)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHcCh
Confidence 66666666666666666666655554 555556666666665311 12345666666666666
Q ss_pred HHHHHHHhhcC
Q 038664 230 FEIACRLSDED 240 (464)
Q Consensus 230 ~~~v~~Ll~~~ 240 (464)
.+++++|++.+
T Consensus 173 ~~iv~~L~~~~ 183 (244)
T 3ui2_A 173 EKVINVLEGQV 183 (244)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 66666666643
No 97
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=4.9e-22 Score=166.69 Aligned_cols=136 Identities=19% Similarity=0.229 Sum_probs=122.0
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccc-cCCCCHHHHHHHhC
Q 038664 5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVEN-HKSETPMHVAARAG 83 (464)
Q Consensus 5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g 83 (464)
.++||.|++.|+.+.++.+++ +.+++..+..|.||||+|+..|+.+++++|+++|++ ++..+ ..|+||||+|+..|
T Consensus 45 ~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~~~~ 121 (183)
T 3deo_A 45 ETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYV 121 (183)
T ss_dssp HHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHhcC
Confidence 578999999999999999998 568999999999999999999999999999999999 55566 89999999999999
Q ss_pred CHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHH
Q 038664 84 NFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTH 163 (464)
Q Consensus 84 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~ 163 (464)
+.+++++|++++++. +.+|..|.||||+|+..++ ...+.+++++|+..|+.+
T Consensus 122 ~~~~v~~Ll~~ga~~----------~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~~~~~ 173 (183)
T 3deo_A 122 RPEVVEALVELGADI----------EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEK 173 (183)
T ss_dssp CHHHHHHHHHHTCCT----------TCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCC----------cCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHcCHHH
Confidence 999999999999884 4789999999999986432 235689999999999999
Q ss_pred HHHHHHHh
Q 038664 164 IACCIIKE 171 (464)
Q Consensus 164 ~~~~Ll~~ 171 (464)
++++|.++
T Consensus 174 i~~~L~~~ 181 (183)
T 3deo_A 174 VINVLEGQ 181 (183)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99999764
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=7.4e-22 Score=178.54 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=110.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHhhcCCCcccc-----ccCCCCCcccccccC---CcHHHHHHHHHHCCCcccccccCCCch
Q 038664 217 DRNPLHYAAALGHFEIACRLSDEDDTLAYE-----RDCNGQSPLHLASEN---GKLSLLKRLLHSYPDSIEFLDKKNRNI 288 (464)
Q Consensus 217 g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 288 (464)
..++|+.|+..|+.+.++.|++.+.+++.. .+..|.||||+|+.. |+.+++++|++++++ ++.+|.+|+||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~Tp 229 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA 229 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCCH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCCH
Confidence 345688888888888888888888776632 577788888888886 888888888888887 58888888999
Q ss_pred hHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhccCch
Q 038664 289 LHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQPSLH 367 (464)
Q Consensus 289 L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~~~~~ 367 (464)
||+|+..|+.+++++|++. +++++.+|..|+||||+|+..++.+++++|++. |++ .|.|||++|...++
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~---gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~-ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARKKHHKECEELLEQA-QAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHT---TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHH------TTSSCCC-------
T ss_pred HHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-cCC------CCCChhHHHHhcCC
Confidence 9999998888998888887 678888888899999999998888888888865 654 67889988886655
No 99
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=5.8e-22 Score=174.17 Aligned_cols=143 Identities=17% Similarity=0.159 Sum_probs=118.0
Q ss_pred ccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcC-
Q 038664 34 MSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQD- 112 (464)
Q Consensus 34 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~- 112 (464)
.+..|.||||+|+..|+.++|++|++ +.+ ++.+|..|.||||+|+..|+.+++++|++++++.+ .++
T Consensus 41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~----------~~~~ 108 (244)
T 3ui2_A 41 VVSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD----------HRDM 108 (244)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCS
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC----------cCCC
Confidence 44567899999999999999999998 776 77888889999999999999999999999888743 455
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHH
Q 038664 113 EEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAII 192 (464)
Q Consensus 113 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~ 192 (464)
..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..+.. ..+.+||++|+.
T Consensus 109 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~~------------------~~~~~~l~~a~~ 169 (244)
T 3ui2_A 109 RGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT------------------TPKGNPMQFGRR 169 (244)
T ss_dssp SSCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHTT------------------CCCSSHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHhc------------------cCCCCHHHHHHH
Confidence 7789999999999999999999999888 467788899999998864322 235789999999
Q ss_pred cCCHHHHHHHHHhCc
Q 038664 193 KSNFVVMAKILEAKR 207 (464)
Q Consensus 193 ~~~~~~~~~ll~~~~ 207 (464)
.|+.++++.|++...
T Consensus 170 ~g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 170 IGLEKVINVLEGQVF 184 (244)
T ss_dssp HHHHHHHHHHHHHHE
T ss_pred cChHHHHHHHHHhcc
Confidence 999999999988643
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=2.3e-22 Score=156.88 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=80.6
Q ss_pred cCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCC
Q 038664 35 SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEE 114 (464)
Q Consensus 35 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~ 114 (464)
+..|.||||+|+..|+.+++++|++.+++ ++.++..|.||||+|+..|+.+++++|++.+++. +.+|..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~d~~ 72 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI----------NAPDKH 72 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT----------TCCCTT
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC----------CcCCCC
Confidence 34567777777777777777777777776 6667777777777777777777777777777663 356777
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHH
Q 038664 115 GNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAI 157 (464)
Q Consensus 115 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 157 (464)
|.||||+|+..++.+++++|++.+++ ++..+..|.||+++|.
T Consensus 73 g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 73 HITPLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATD 114 (123)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhC
Confidence 77777777777777777777777766 4566777777777773
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=4.5e-23 Score=178.93 Aligned_cols=138 Identities=18% Similarity=0.188 Sum_probs=74.5
Q ss_pred hhcCCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHH-CCCcccccccCCCchhH
Q 038664 212 VLDKRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHS-YPDSIEFLDKKNRNILH 290 (464)
Q Consensus 212 ~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~L~ 290 (464)
..+..|.||||+|+..|+.+++++|++.+.+++ .++..|+||||+|+..|+.+++++|++. +.+ ++.+|..|+||||
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL~ 145 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTALH 145 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHHH
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHHH
Confidence 345556666666666666666666666665555 4555666666666666666666666665 333 4556666666666
Q ss_pred HHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccC
Q 038664 291 LAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKK 355 (464)
Q Consensus 291 ~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g 355 (464)
+|+..|+.+++++|++. +++++.+|..|+||||+|+..++.++++.|+.. +++.+.+|.+|
T Consensus 146 ~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~~~ 206 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAK---GARTDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNAED 206 (222)
T ss_dssp HHHHHTCHHHHHHHHHH---TCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HHHHcCCHHHHHHHHHc---CCCCccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccchhh
Confidence 66666666666666555 455566666666666666666666666666543 55555554433
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=1e-21 Score=175.64 Aligned_cols=124 Identities=17% Similarity=0.174 Sum_probs=109.7
Q ss_pred CcHHHHHHHcCCHHHHHHHhhcCCCccc-----cccCCCCCcccccccC---CcHHHHHHHHHHCCCcccccccCCCchh
Q 038664 218 RNPLHYAAALGHFEIACRLSDEDDTLAY-----ERDCNGQSPLHLASEN---GKLSLLKRLLHSYPDSIEFLDKKNRNIL 289 (464)
Q Consensus 218 ~t~L~~a~~~~~~~~v~~Ll~~~~~~~~-----~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 289 (464)
.++|+.|+..|+.+.++.+++.|.+... ..+..|.||||+|+.. |+.+++++|+++|++ ++.+|..|+|||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpL 209 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHH
Confidence 3688899999999999999988887542 2377899999999998 899999999999988 599999999999
Q ss_pred HHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcccc
Q 038664 290 HLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRV 346 (464)
Q Consensus 290 ~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~ 346 (464)
|+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|++. |+
T Consensus 210 h~A~~~g~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga 262 (278)
T 1dcq_A 210 HYCCLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQA-LS 262 (278)
T ss_dssp HHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HT
T ss_pred HHHHHcCCHHHHHHHHHc---CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence 999999999999999986 788999999999999999999999999999975 55
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=5e-22 Score=172.32 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=100.1
Q ss_pred cCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcc-cCCCCCCcchHHHHhhcCC
Q 038664 35 SQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRP-HGNGNNTGTFDDILRKQDE 113 (464)
Q Consensus 35 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~ 113 (464)
+..|.||||+||..|+.++|++|++.+++ ++.+|..|.||||+|+..|+.+++++|++. +++. +.+|.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~----------~~~d~ 138 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL----------NQQNK 138 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC----------CCCCT
T ss_pred ccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc----------cccCC
Confidence 45678888888888888888888888887 677888888888888888888888888887 6663 46788
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcC
Q 038664 114 EGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSV 175 (464)
Q Consensus 114 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~ 175 (464)
.|.||||+|+..|+.+++++|++.|++ .+..+..|.|||++|+..++.++++.+++.+...
T Consensus 139 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 139 LGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 888888888888888888888888877 4577888888888888888888888888776654
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=1.5e-20 Score=138.54 Aligned_cols=92 Identities=35% Similarity=0.552 Sum_probs=79.9
Q ss_pred CCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCC
Q 038664 37 NRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGN 116 (464)
Q Consensus 37 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~ 116 (464)
+|+||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+++. +.+|..|.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~----------~~~d~~g~ 69 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV----------NAKDKNGR 69 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTSC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CccCCCCC
Confidence 478999999999999999999999888 7888889999999999999999999999988874 46788899
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCC
Q 038664 117 TPLHNAVRKCDGKMAFTMIRKDP 139 (464)
Q Consensus 117 t~L~~A~~~~~~~~~~~Ll~~~~ 139 (464)
||||+|+..|+.+++++|++.|+
T Consensus 70 t~l~~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 70 TPLHLAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999999988875
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=9.4e-21 Score=175.03 Aligned_cols=147 Identities=19% Similarity=0.212 Sum_probs=115.4
Q ss_pred cCCCCcHHHHHHHc-CCHHHHHHHhhcCCCcccccc--CCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhH
Q 038664 214 DKRDRNPLHYAAAL-GHFEIACRLSDEDDTLAYERD--CNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILH 290 (464)
Q Consensus 214 ~~~g~t~L~~a~~~-~~~~~v~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~ 290 (464)
+..+.|+||.|+.. ++.+++++|++.|++++. .+ ..|.||||+|+..|+.+++++|++++++ ++..|..|+||||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~-~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh 273 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNW-VNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLH 273 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCc-cccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHH
Confidence 34566899999999 999999999999998884 55 7899999999999999999999999988 5999999999999
Q ss_pred HHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhcc--ccccccccccCCChHHhhccC
Q 038664 291 LAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNM--RVNIRATNEKKQTALAIVQPS 365 (464)
Q Consensus 291 ~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~--~~d~~~~n~~g~t~l~~a~~~ 365 (464)
+|+..|+.+++++|++. +++++.+|..|+||||+|+..++.+++++|+... +.+....+..+.|+++++...
T Consensus 274 ~A~~~g~~~~v~~LL~~---Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 274 HATILGHTGLACLFLKR---GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHcCcHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 99999999999999988 7889999999999999999999999999998652 344556678889999988843
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=4.6e-20 Score=179.25 Aligned_cols=124 Identities=16% Similarity=0.186 Sum_probs=58.3
Q ss_pred chhHHHHhcCCHHHHHHHHHhCCcccccc------ccCCCCHHHHHHH---hCCHHHHHHHhcccCCCCCCcchHHHHhh
Q 038664 40 TALHIAARFGHKNVVMEILELRPDLVSVE------NHKSETPMHVAAR---AGNFGVAKIFMRPHGNGNNTGTFDDILRK 110 (464)
Q Consensus 40 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~------~~~g~t~L~~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 110 (464)
+.||.|+..|+.+.|+.|++.|++ ++.. +..|.||||+||. .|+.+++++|+++|++. +.
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~-~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v----------n~ 202 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL----------DA 202 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCC-SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT----------TC
T ss_pred HHHHHHHhccCHHHHHHHHhhccc-ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC----------Cc
Confidence 445555555555555555554444 2222 4444555555543 44445555555544442 24
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcC
Q 038664 111 QDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSV 175 (464)
Q Consensus 111 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~ 175 (464)
+|..|.||||+|+..|+.+++++|++.|++ ++..|..|.||||+|+..|+.+++++|++++++.
T Consensus 203 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 266 (497)
T 3lvq_E 203 KAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAGT 266 (497)
T ss_dssp CCSSSCCHHHHHTTTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 444455555555555555555555554444 2344444555555555555555555555544443
No 107
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=1.7e-19 Score=161.13 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=72.3
Q ss_pred cHHHHHHHcCCHHHHHHHHHhcCcC-----cCCCCCCCCCHHHHHHHc---CCHHHHHHHHHhCchhhhhhcCCCCcHHH
Q 038664 151 SPLSLAIDAGLTHIACCIIKEKLSV-----LDHRGPNDLTLLHIAIIK---SNFVVMAKILEAKRDLINVLDKRDRNPLH 222 (464)
Q Consensus 151 t~l~~A~~~g~~~~~~~Ll~~~~~~-----~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~g~t~L~ 222 (464)
++|+.|+..|+.+.+..+++.+.+. ++..+..|.||||+|+.. ++.+++++|++.+++ ++..|..|+||||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh 210 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHH
Confidence 4555555555555555555555443 123345556666666665 556666666666555 5555666666666
Q ss_pred HHHHcCCHHHHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHCCC
Q 038664 223 YAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSYPD 276 (464)
Q Consensus 223 ~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 276 (464)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++++++
T Consensus 211 ~A~~~g~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCC-CccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 6666666666666666666555 4555666666666666666666666666554
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=2.1e-20 Score=181.64 Aligned_cols=140 Identities=15% Similarity=0.156 Sum_probs=108.9
Q ss_pred cHHHHHHHcCCHHHHHHHhhcCCCcccc-----ccCCCCCcccccc---cCCcHHHHHHHHHHCCCcccccccCCCchhH
Q 038664 219 NPLHYAAALGHFEIACRLSDEDDTLAYE-----RDCNGQSPLHLAS---ENGKLSLLKRLLHSYPDSIEFLDKKNRNILH 290 (464)
Q Consensus 219 t~L~~a~~~~~~~~v~~Ll~~~~~~~~~-----~~~~g~tpL~~A~---~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~ 290 (464)
+.||.|+..|+.+.++.|++.|++++.. .+..|.||||+|+ ..|+.+++++|+++|++ ++.+|..|+||||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~TpLh 212 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCCHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCcHHH
Confidence 5789999999999999999998877632 2778999999994 48999999999999988 5999999999999
Q ss_pred HHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcCCchHHHHHHhccccccccccccCCChHHhhc
Q 038664 291 LAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINNHFNIVLILARNMRVNIRATNEKKQTALAIVQ 363 (464)
Q Consensus 291 ~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l~~a~ 363 (464)
+|+.+|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|++. |++++.......+++.++.
T Consensus 213 ~A~~~g~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~~~~~~h~~~~~~~~~ 281 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARKKHHKECEELLEQA-QAGTFAFPLHVDYSWVIST 281 (497)
T ss_dssp HHTTTTCHHHHHHHHHT---CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT-CC-----------------
T ss_pred HHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCCCCCcceeeccccCCC
Confidence 99999999999999987 788999999999999999999999999999976 9998886555555544444
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=2.1e-20 Score=137.68 Aligned_cols=93 Identities=44% Similarity=0.669 Sum_probs=74.6
Q ss_pred CCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHH
Q 038664 250 NGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAA 329 (464)
Q Consensus 250 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~ 329 (464)
+|+||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|++. +++++.+|..|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHH
Confidence 367888888888888888888888777 478888888888888888888888888876 6778888888888888888
Q ss_pred HcCCchHHHHHHhccccc
Q 038664 330 INNHFNIVLILARNMRVN 347 (464)
Q Consensus 330 ~~~~~~~v~~Ll~~~~~d 347 (464)
+.|+.+++++|++. |++
T Consensus 77 ~~~~~~~~~~Ll~~-ga~ 93 (93)
T 1n0q_A 77 RNGHLEVVKLLLEA-GAY 93 (93)
T ss_dssp HTTCHHHHHHHHHT-TCC
T ss_pred HcCCHHHHHHHHHc-CCC
Confidence 88888888888865 653
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.82 E-value=9.1e-21 Score=145.88 Aligned_cols=108 Identities=33% Similarity=0.474 Sum_probs=87.2
Q ss_pred ccCCCCCcccccccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHH
Q 038664 247 RDCNGQSPLHLASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLH 326 (464)
Q Consensus 247 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh 326 (464)
+|..|+||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..++.+++++|++. +++++.+|..|+||||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~d~~g~tpl~ 80 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK---GADVNARSKDGNTPEH 80 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTT---TCCTTCCCTTCCCTTH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCcccCCCCCCHHH
Confidence 566777888888888888888888877776 477788888888888888888888888876 6778888888889999
Q ss_pred HHHHcCCchHHHHHHhccccccccccccCCChH
Q 038664 327 LAAINNHFNIVLILARNMRVNIRATNEKKQTAL 359 (464)
Q Consensus 327 ~A~~~~~~~~v~~Ll~~~~~d~~~~n~~g~t~l 359 (464)
+|+..++.+++++|+++ |+|++.++..|.||-
T Consensus 81 ~A~~~~~~~~~~~Ll~~-ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAK-GADVNARSWGSSHHH 112 (115)
T ss_dssp HHHTTTCHHHHHHHHTT-SSSHHHHSCCCC---
T ss_pred HHHHCCCHHHHHHHHHc-CCCCCcCCccccccc
Confidence 99988888899888865 888888888888874
No 111
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=5.2e-20 Score=170.05 Aligned_cols=149 Identities=21% Similarity=0.221 Sum_probs=116.9
Q ss_pred CCCCCHHHHHHHc-CCHHHHHHHHHhCchhhhhhc--CCCCcHHHHHHHcCCHHHHHHHhhcCCCccccccCCCCCcccc
Q 038664 181 PNDLTLLHIAIIK-SNFVVMAKILEAKRDLINVLD--KRDRNPLHYAAALGHFEIACRLSDEDDTLAYERDCNGQSPLHL 257 (464)
Q Consensus 181 ~~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~--~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~ 257 (464)
..+.++||.|+.. ++.++++.|++.+.+ ++..+ ..|.||||+|+..|+.+++++|+++|++++ ..|..|+||||+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d~~G~TpLh~ 274 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLHH 274 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHH
Confidence 3455799999999 999999999999987 78777 899999999999999999999999999988 689999999999
Q ss_pred cccCCcHHHHHHHHHHCCCcccccccCCCchhHHHHhcCchHHHHHHhcCcchhhhhhccCCCCCcHHHHHHHcC
Q 038664 258 ASENGKLSLLKRLLHSYPDSIEFLDKKNRNILHLAAQNGHANVVVFISKLPEIEDMINSSDLEGNTPLHLAAINN 332 (464)
Q Consensus 258 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~L~~~~~~~~~~~~~d~~g~t~Lh~A~~~~ 332 (464)
|+..|+.+++++|++++++ ++..|..|+||||+|+..++.+++++|+............+..+.|+++++....
T Consensus 275 A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 9999999999999999988 5999999999999999999999999999876555555566777889998877654
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=1.2e-19 Score=139.61 Aligned_cols=108 Identities=24% Similarity=0.347 Sum_probs=94.6
Q ss_pred cccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhcC
Q 038664 33 DMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQD 112 (464)
Q Consensus 33 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 112 (464)
.+|.+|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.+++. +.+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------~~~d 72 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV----------NARS 72 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT----------TCCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC----------cccC
Confidence 3678899999999999999999999999988 7888999999999999999999999999998874 4778
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcH
Q 038664 113 EEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSP 152 (464)
Q Consensus 113 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~ 152 (464)
..|.||||+|+..++.+++++|++.|+++ +..+..+.+|
T Consensus 73 ~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~ 111 (115)
T 2l6b_A 73 KDGNTPEHLAKKNGHHEIVKLLDAKGADV-NARSWGSSHH 111 (115)
T ss_dssp TTCCCTTHHHHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence 89999999999999999999999999884 5667777776
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.73 E-value=1.1e-17 Score=127.05 Aligned_cols=93 Identities=25% Similarity=0.371 Sum_probs=82.4
Q ss_pred cccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhh
Q 038664 31 ILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRK 110 (464)
Q Consensus 31 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 110 (464)
....+.+|.|+||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++++++. +.
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~----------~~ 85 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV----------XA 85 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------TC
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----------cc
Confidence 336788999999999999999999999999988 7888999999999999999999999999998874 47
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHH
Q 038664 111 QDEEGNTPLHNAVRKCDGKMAFTM 134 (464)
Q Consensus 111 ~~~~g~t~L~~A~~~~~~~~~~~L 134 (464)
+|..|.||||+|+..|+.+++++|
T Consensus 86 ~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 86 QDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred cccCCCcHHHHHHHcCCHHHHHHh
Confidence 889999999999999999999876
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.65 E-value=9.5e-16 Score=116.37 Aligned_cols=88 Identities=32% Similarity=0.443 Sum_probs=81.3
Q ss_pred CcccHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHH
Q 038664 2 STVARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAAR 81 (464)
Q Consensus 2 ~~~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 81 (464)
+...++||.|+..|+.+.++.+++. +.+++..+..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+.
T Consensus 22 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~ 99 (110)
T 2zgd_A 22 SDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISID 99 (110)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred CccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHHHHHHH
Confidence 3456799999999999999999876 558998899999999999999999999999999998 78899999999999999
Q ss_pred hCCHHHHHHH
Q 038664 82 AGNFGVAKIF 91 (464)
Q Consensus 82 ~g~~~~v~~L 91 (464)
.|+.+++++|
T Consensus 100 ~~~~~~~~~L 109 (110)
T 2zgd_A 100 NGNEDLAEIL 109 (110)
T ss_dssp HTCHHHHHHH
T ss_pred cCCHHHHHHh
Confidence 9999999987
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=77.15 E-value=1.8 Score=23.93 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=15.3
Q ss_pred ccHHHHHHHHcCCHHHHHHH
Q 038664 4 VARVLFRALRRGDAATVRES 23 (464)
Q Consensus 4 ~~~~L~~A~~~g~~~~~~~l 23 (464)
+...++.||.+||.+.++.|
T Consensus 13 iEQqiyvA~seGd~etv~~L 32 (40)
T 1gp8_A 13 IRKQMDAAASKGDVETYRKL 32 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHH
Confidence 45678888888888888554
No 116
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=76.74 E-value=3.1 Score=37.57 Aligned_cols=125 Identities=9% Similarity=0.016 Sum_probs=71.9
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhcCCCcc--cccCCCCchhHHHHhcCCHHHHHHHHHhC-Ccc-ccccccCCCCHHHHHH
Q 038664 5 ARVLFRALRRGDAATVRESARLNGNGIL--DMSQNRDTALHIAARFGHKNVVMEILELR-PDL-VSVENHKSETPMHVAA 80 (464)
Q Consensus 5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~-~~~~~~~g~t~L~~A~ 80 (464)
++.|......++.+....++.+-...+. ..|..|+..+.....+|+.+....+++.- +.+ --..+..|...+..+.
T Consensus 38 sR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~l 117 (351)
T 3gvo_A 38 SRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKAL 117 (351)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHH
T ss_pred hHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHH
Confidence 3455566777777776666654332222 56888888888888888888777777642 121 1235666777777777
Q ss_pred HhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHH
Q 038664 81 RAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIR 136 (464)
Q Consensus 81 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 136 (464)
.....+-...+++.-... . .--..|..|+..+......+..+....+++
T Consensus 118 e~~~~~~~~~i~~el~~~-----~--~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~ 166 (351)
T 3gvo_A 118 ESISSDQQSEMVKELDGH-----V--LKCVKDQNGNHVVQKCIECVQPQSLQFIID 166 (351)
T ss_dssp HHSCHHHHHHHHGGGTTC-----H--HHHHHSTTHHHHHHHHHHHSCGGGTHHHHH
T ss_pred HhCCHHHHHHHHHHhhhh-----H--HHHHHhhhhhHHHHHHHHhCCHHHHHHHHH
Confidence 766665555555432110 0 112356666666666555544443333433
No 117
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=63.00 E-value=55 Score=25.89 Aligned_cols=132 Identities=13% Similarity=0.098 Sum_probs=78.4
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhcCCCcccccCCCCchhHHHHhcCCHHHHHHHHHhCCccccccccCCCCHHHHHHHhCC
Q 038664 5 ARVLFRALRRGDAATVRESARLNGNGILDMSQNRDTALHIAARFGHKNVVMEILELRPDLVSVENHKSETPMHVAARAGN 84 (464)
Q Consensus 5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~ 84 (464)
+..+-.|+..|+++...++.+.-. .....+..=..|...|+.++++....+-.+. ...+.+....|+
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCC
Confidence 456778888888888877776431 1112234445666788888888888876652 134555566777
Q ss_pred HHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHH
Q 038664 85 FGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHI 164 (464)
Q Consensus 85 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~ 164 (464)
.+-++.+.+ +.....+.+..++.+...|+.+-..-++....... -+...|-.+|..+.
T Consensus 76 ~e~L~kla~--------------iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~--------eA~~~A~t~g~~~~ 133 (177)
T 3mkq_B 76 VNKLSKMQN--------------IAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLP--------LAYAVAKANGDEAA 133 (177)
T ss_dssp HHHHHHHHH--------------HHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH--------HHHHHHHHTTCHHH
T ss_pred HHHHHHHHH--------------HHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChH--------HHHHHHHHcCcHHH
Confidence 776666653 22233444566777777777654444333322211 23455666777777
Q ss_pred HHHHHHh
Q 038664 165 ACCIIKE 171 (464)
Q Consensus 165 ~~~Ll~~ 171 (464)
.+.+++.
T Consensus 134 a~~~~~~ 140 (177)
T 3mkq_B 134 ASAFLEQ 140 (177)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 118
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=60.55 E-value=45 Score=29.86 Aligned_cols=157 Identities=8% Similarity=0.075 Sum_probs=83.3
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCcc--cccCCCCchhHHHHhcCCHHHHHHHHHh-CCcc-ccccccCCCCHHHHHHHh
Q 038664 7 VLFRALRRGDAATVRESARLNGNGIL--DMSQNRDTALHIAARFGHKNVVMEILEL-RPDL-VSVENHKSETPMHVAARA 82 (464)
Q Consensus 7 ~L~~A~~~g~~~~~~~ll~~~~~~~~--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~-~~~~~~~g~t~L~~A~~~ 82 (464)
.+......++.+....+++.-...+. ..+..|...+..+......+-...+++. .+.. .-..|..|...+......
T Consensus 76 vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~ 155 (351)
T 3gvo_A 76 VIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIEC 155 (351)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHh
Confidence 34445566777766666654433333 4567777788888877776665555553 1211 123566676677666666
Q ss_pred CCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHh--CCccccccccCCCcHHHHHHHcC
Q 038664 83 GNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK--DPELICYINKAGQSPLSLAIDAG 160 (464)
Q Consensus 83 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~~g~t~l~~A~~~g 160 (464)
+..+..+.+++.-... .. --..+..|...+..+......+-...+++. ..-..-..|..|...+......+
T Consensus 156 ~~~~~~~~i~~~~~~~-----~~--~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~ 228 (351)
T 3gvo_A 156 VQPQSLQFIIDAFKGQ-----VF--VLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHG 228 (351)
T ss_dssp SCGGGTHHHHHHTTTT-----HH--HHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHH-----HH--HHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhC
Confidence 6655544444432110 00 112344555555555554443322222221 11112245667777777777777
Q ss_pred CHHHHHHHHH
Q 038664 161 LTHIACCIIK 170 (464)
Q Consensus 161 ~~~~~~~Ll~ 170 (464)
..+..+.+++
T Consensus 229 ~~~~~~~i~~ 238 (351)
T 3gvo_A 229 RPEDKSKIVS 238 (351)
T ss_dssp CHHHHHHHHH
T ss_pred chhhHHHHHH
Confidence 7666666655
No 119
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=57.82 E-value=17 Score=33.00 Aligned_cols=159 Identities=9% Similarity=0.029 Sum_probs=79.4
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhcCCCcc--cccCCCCchhHHHHhcCCHHHHHHHHHhCC-ccc-cccccCCCCHHHHHH
Q 038664 5 ARVLFRALRRGDAATVRESARLNGNGIL--DMSQNRDTALHIAARFGHKNVVMEILELRP-DLV-SVENHKSETPMHVAA 80 (464)
Q Consensus 5 ~~~L~~A~~~g~~~~~~~ll~~~~~~~~--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~-~~~~~~g~t~L~~A~ 80 (464)
++.+..+...++.+....++++-...+. ..|..|+..+......+..+..+.+++.-. ... -..+..|...+..+.
T Consensus 43 sR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~l 122 (369)
T 3k49_A 43 SRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKAL 122 (369)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHH
T ss_pred hHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHH
Confidence 3456666777777776666664332222 567888888888888888777766666421 111 123445555555555
Q ss_pred HhCCHHHHHHHhcccCCCCCCcchHHHHhhcCCCCCcHHHHHHHcCCHHHHHHHHHh-CCc-cccccccCCCcHHHHHHH
Q 038664 81 RAGNFGVAKIFMRPHGNGNNTGTFDDILRKQDEEGNTPLHNAVRKCDGKMAFTMIRK-DPE-LICYINKAGQSPLSLAID 158 (464)
Q Consensus 81 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~-~~~~~~~~g~t~l~~A~~ 158 (464)
.....+-...+++.-... . .--..|..|+..+......+..+....+++. ... ..-..++.|...+..+..
T Consensus 123 e~~~~~q~~~ii~el~~~-----~--~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~ 195 (369)
T 3k49_A 123 EYIDSNQRIELVLELSDS-----V--LQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLE 195 (369)
T ss_dssp HHSCHHHHHHHHGGGTTC-----H--HHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH-----H--HHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHH
Confidence 555544444444321110 0 1123455666555555554443222222221 000 011224445555555555
Q ss_pred cCCHHHHHHHHH
Q 038664 159 AGLTHIACCIIK 170 (464)
Q Consensus 159 ~g~~~~~~~Ll~ 170 (464)
.+..+.-+.+++
T Consensus 196 ~~~~~~~~~i~~ 207 (369)
T 3k49_A 196 FGSSEDQESILN 207 (369)
T ss_dssp HSCHHHHHHHHH
T ss_pred hCCHHHHHHHHH
Confidence 555544444443
No 120
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=42.44 E-value=1.1e+02 Score=24.24 Aligned_cols=132 Identities=11% Similarity=0.044 Sum_probs=77.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCccccccccCCCcHHHHHHHcCCHHHHHHHHHhcCcCcCCCCCCCCCHHHHHHHcCC
Q 038664 116 NTPLHNAVRKCDGKMAFTMIRKDPELICYINKAGQSPLSLAIDAGLTHIACCIIKEKLSVLDHRGPNDLTLLHIAIIKSN 195 (464)
Q Consensus 116 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~ 195 (464)
.+=+..|+..|+.+.+..+.+...+. ..-..-=..|...|+.++++....+..+. ...+......|+
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~~~-----~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLNDS-----ITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHCCH-----HHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCCH-----HHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCC
Confidence 45577888889988887776542110 00112234577888999888888765543 123444455666
Q ss_pred HHHHHHHHHhCchhhhhhcCCCCcHHHHHHHcCCHH-HHHHHhhcCCCccccccCCCCCcccccccCCcHHHHHHHHHHC
Q 038664 196 FVVMAKILEAKRDLINVLDKRDRNPLHYAAALGHFE-IACRLSDEDDTLAYERDCNGQSPLHLASENGKLSLLKRLLHSY 274 (464)
Q Consensus 196 ~~~~~~ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~-~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 274 (464)
.+-++.+.+. .....+-+..++.+...|+.+ +++.|.+.+..+ -+...|-.+|..++.+.+++.-
T Consensus 76 ~e~L~kla~i-----A~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~---------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 76 VNKLSKMQNI-----AQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLP---------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHH-----HHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH---------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChH---------HHHHHHHHcCcHHHHHHHHHHh
Confidence 6666655442 122223345677777777765 445554443222 1455666678888888887654
No 121
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=37.50 E-value=84 Score=28.51 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=16.7
Q ss_pred HHHcCCHHHHHHHHhhcCCCcc
Q 038664 11 ALRRGDAATVRESARLNGNGIL 32 (464)
Q Consensus 11 A~~~g~~~~~~~ll~~~~~~~~ 32 (464)
.+.+||...|+..+..+| ++.
T Consensus 29 gv~e~~~~~ve~y~~~gg-~~~ 49 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGG-DIA 49 (454)
T ss_dssp HHHHTCHHHHHHHHTTTC-CTT
T ss_pred HHHcCChhHHHHHHhcCC-chh
Confidence 367899999999998887 443
No 122
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=35.87 E-value=22 Score=32.12 Aligned_cols=96 Identities=6% Similarity=-0.047 Sum_probs=55.0
Q ss_pred ccCCCCchhHHHHhcCCHHHHHHHHHhC-Ccc-ccccccCCCCHHHHHHHhCCHHHHHHHhcccCCCCCCcchHHHHhhc
Q 038664 34 MSQNRDTALHIAARFGHKNVVMEILELR-PDL-VSVENHKSETPMHVAARAGNFGVAKIFMRPHGNGNNTGTFDDILRKQ 111 (464)
Q Consensus 34 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 111 (464)
.+++|.-.+..+...+..+-.+.+.+.- +.. .-..|..|...+......+..+..+.+++.-... .. --..
T Consensus 38 ~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~-----~~--~L~~ 110 (369)
T 3k49_A 38 KDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGN-----MK--QLSL 110 (369)
T ss_dssp TSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTC-----HH--HHHH
T ss_pred cCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhh-----HH--HHhc
Confidence 4556666777777777766655555431 111 1246778888888888888777666666543211 11 1124
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHH
Q 038664 112 DEEGNTPLHNAVRKCDGKMAFTMIR 136 (464)
Q Consensus 112 ~~~g~t~L~~A~~~~~~~~~~~Ll~ 136 (464)
+..|...+..+......+-...++.
T Consensus 111 ~~~G~rVlQk~le~~~~~q~~~ii~ 135 (369)
T 3k49_A 111 QMYACRVIQKALEYIDSNQRIELVL 135 (369)
T ss_dssp STTHHHHHHHHHHHSCHHHHHHHHG
T ss_pred ChhhHHHHHHHHHhCCHHHHHHHHH
Confidence 5566666666666555544444443
No 123
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=20.85 E-value=75 Score=20.96 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=22.7
Q ss_pred ccchhHHhHhHHHHHHHHHHHHHHhhc
Q 038664 436 LVFKAFVLTDTIAMTTSLTAAVLTFGH 462 (464)
Q Consensus 436 ~~f~~f~~~~~~a~~~s~~~~~~~~~~ 462 (464)
.++.-|.++-++++|+=+++.+++|.+
T Consensus 50 ~~ilG~Al~Ea~glf~LvvA~lllFav 76 (76)
T 4f4s_A 50 MAILGFALSEATGLFCLMVSFLLLFGV 76 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 568889999999999999999988753
No 124
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=20.28 E-value=31 Score=25.34 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=35.3
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCCCccc-ccCCCCchhHHHHhcCCHHHHHHHHHhCCc
Q 038664 4 VARVLFRALRRGDAATVRESARLNGNGILD-MSQNRDTALHIAARFGHKNVVMEILELRPD 63 (464)
Q Consensus 4 ~~~~L~~A~~~g~~~~~~~ll~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 63 (464)
++..+..||+.|+||.+..+=.....-+.. ......++|.-+......++++.++++...
T Consensus 17 lS~~ML~aA~~gdWD~Lv~lE~~y~~~Ve~l~~~~~~~~l~~~~~~~~~~lL~~IL~nDae 77 (122)
T 3a7m_A 17 LSQSLLELAQRGEWDLLLQQEVSYLQSIETVMEKQTPPGITRSIQDMVAGYIKQTLDNEQL 77 (122)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhHHH
Confidence 356788999999999997765543322221 112223445555555556667777765443
No 125
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=20.03 E-value=3.8e+02 Score=24.41 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHh
Q 038664 113 EEGNTPLHNAVRKCDGKMAFTMIRK 137 (464)
Q Consensus 113 ~~g~t~L~~A~~~~~~~~~~~Ll~~ 137 (464)
..|.|.+|.|++..+.+++-.|+..
T Consensus 67 ~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 67 DVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp CTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCchhhhhhhhhhhhhHHHHhhhc
Confidence 3588999999999999999998873
Done!