Your job contains 1 sequence.
>038665
EEKKTVVVGSEAVEEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTD
GVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR
MKLEEKKQQARRVYVRKESKLKPLLLKKAGVSRLSGRRRRGSSRFSSRASD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 038665
(171 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2120282 - symbol:AT4G39040 species:3702 "Arabi... 383 1.9e-35 1
TAIR|locus:2050150 - symbol:AT2G21350 species:3702 "Arabi... 363 2.5e-33 1
UNIPROTKB|Q81LQ2 - symbol:BA_4560 "Putative RNA-binding p... 136 2.9e-09 1
TIGR_CMR|BA_4560 - symbol:BA_4560 "conserved hypothetical... 136 2.9e-09 1
UNIPROTKB|Q71ZI1 - symbol:LMOf2365_1508 "Putative unchara... 134 4.7e-09 1
UNIPROTKB|P0AGK4 - symbol:yhbY "predicted RNA-binding pro... 130 1.2e-08 1
UNIPROTKB|Q74DQ2 - symbol:yhbY "RNA-binding protein YhbY"... 123 6.8e-08 1
UNIPROTKB|Q97P93 - symbol:SP_1748 "Putative uncharacteriz... 123 6.8e-08 1
TIGR_CMR|GSU_1263 - symbol:GSU_1263 "conserved hypothetic... 123 6.8e-08 1
UNIPROTKB|Q8EHM4 - symbol:yhbY "Putative RNA-binding prot... 121 1.1e-07 1
TIGR_CMR|SO_1195 - symbol:SO_1195 "conserved hypothetical... 121 1.1e-07 1
UNIPROTKB|Q9KU88 - symbol:VC_0635 "Putative uncharacteriz... 106 4.3e-06 1
TIGR_CMR|VC_0635 - symbol:VC_0635 "conserved hypothetical... 106 4.3e-06 1
UNIPROTKB|Q47YJ2 - symbol:CPS_3454 "Putative uncharacteri... 96 5.0e-05 1
UNIPROTKB|Q48E68 - symbol:PSPPH_4200 "Uncharacterized pro... 96 5.0e-05 1
TIGR_CMR|CPS_3454 - symbol:CPS_3454 "conserved hypothetic... 96 5.0e-05 1
UNIPROTKB|Q4KIG4 - symbol:PFL_0834 "RNA-binding protein, ... 95 6.3e-05 1
UNIPROTKB|Q87WP6 - symbol:PSPTO_4499 "Uncharacterized pro... 93 0.00010 1
UNIPROTKB|Q607B1 - symbol:MCA1850 "Putative uncharacteriz... 92 0.00013 1
TAIR|locus:2094997 - symbol:EMB1865 "embryo defective 186... 99 0.00051 1
>TAIR|locus:2120282 [details] [associations]
symbol:AT4G39040 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009073 "aromatic amino acid family biosynthetic
process" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR001890 Pfam:PF01985 ProDom:PD010559 PROSITE:PS51295
SMART:SM01103 GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:AL035679 EMBL:AL161594 Gene3D:3.30.110.60
SUPFAM:SSF75471 UniGene:At.2846 UniGene:At.66625 KO:K07574
EMBL:BT005289 EMBL:AK118512 IPI:IPI00548713 PIR:T06064
RefSeq:NP_195615.1 HSSP:P42550 ProteinModelPortal:Q9SVI9 SMR:Q9SVI9
STRING:Q9SVI9 PaxDb:Q9SVI9 PRIDE:Q9SVI9 EnsemblPlants:AT4G39040.1
GeneID:830059 KEGG:ath:AT4G39040 TAIR:At4g39040 eggNOG:NOG315827
HOGENOM:HOG000131672 InParanoid:Q9SVI9 OMA:GQIGRTV PhylomeDB:Q9SVI9
ProtClustDB:CLSN2685659 ArrayExpress:Q9SVI9 Genevestigator:Q9SVI9
Uniprot:Q9SVI9
Length = 296
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 75/108 (69%), Positives = 89/108 (82%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
++KEKKELASYAHSLG KLKCQLVGKSGVTD VV SF+ETLE NELLK+KI +T P ELE
Sbjct: 154 SIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLKVKIRKTSPDELE 213
Query: 90 DVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRK 137
D V+ LEEATGS V QIG+TVI+YRPS T+MK E KK++ R+ + +
Sbjct: 214 DAVQHLEEATGSVAVGQIGRTVILYRPSPTKMKAEAKKKEVERMSITR 261
>TAIR|locus:2050150 [details] [associations]
symbol:AT2G21350 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 ProDom:PD010559
PROSITE:PS51295 SMART:SM01103 EMBL:CP002685 GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 UniGene:At.27297 IPI:IPI00520866
RefSeq:NP_179731.4 UniGene:At.66227 ProteinModelPortal:F4IGM0
SMR:F4IGM0 PRIDE:F4IGM0 EnsemblPlants:AT2G21350.1 GeneID:816674
KEGG:ath:AT2G21350 Uniprot:F4IGM0
Length = 222
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 70/100 (70%), Positives = 85/100 (85%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
+ KEK++LASYAH LG KLK QLVGKSGVTD VV SF+ETLE NELLK+KIHRTCPGELE
Sbjct: 120 SAKEKRKLASYAHHLGDKLKSQLVGKSGVTDSVVLSFVETLEKNELLKVKIHRTCPGELE 179
Query: 90 DVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQ 129
D++ +LEEATGS V QI +TVI+YRPS T++K +E K++
Sbjct: 180 DMILRLEEATGSVSVGQIARTVILYRPSPTKLKADEDKKR 219
>UNIPROTKB|Q81LQ2 [details] [associations]
symbol:BA_4560 "Putative RNA-binding protein, YhbY family"
species:1392 "Bacillus anthracis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001890
InterPro:IPR017924 Pfam:PF01985 ProDom:PD010559 PROSITE:PS51295
SMART:SM01103 EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0003723 Gene3D:3.30.110.60
SUPFAM:SSF75471 HOGENOM:HOG000016279 KO:K07574 TIGRFAMs:TIGR00253
OMA:QNCEEDR RefSeq:NP_846782.1 RefSeq:YP_021205.1 HSSP:P71376
ProteinModelPortal:Q81LQ2 SMR:Q81LQ2 DNASU:1088293
EnsemblBacteria:EBBACT00000010870 EnsemblBacteria:EBBACT00000013658
GeneID:1088293 GeneID:2818983 KEGG:ban:BA_4560 KEGG:bar:GBAA_4560
PATRIC:18786704 ProtClustDB:CLSK2517057
BioCyc:BANT261594:GJ7F-4435-MONOMER Uniprot:Q81LQ2
Length = 97
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
T K+K+ L + AH L + VGK GV + ++ +TLEA EL K+ + + C +
Sbjct: 3 TGKQKRFLRAQAHHLTPIFQ---VGKGGVNENMIKQIADTLEARELFKVSVLQNCEFDRR 59
Query: 90 DVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + + +V IG T+++Y+ S
Sbjct: 60 EVAEELAKGARAEIVQVIGSTIVLYKES 87
>TIGR_CMR|BA_4560 [details] [associations]
symbol:BA_4560 "conserved hypothetical protein TIGR00253"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 InterPro:IPR017924 Pfam:PF01985 ProDom:PD010559
PROSITE:PS51295 SMART:SM01103 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000016279 KO:K07574
TIGRFAMs:TIGR00253 OMA:QNCEEDR RefSeq:NP_846782.1
RefSeq:YP_021205.1 HSSP:P71376 ProteinModelPortal:Q81LQ2 SMR:Q81LQ2
DNASU:1088293 EnsemblBacteria:EBBACT00000010870
EnsemblBacteria:EBBACT00000013658 GeneID:1088293 GeneID:2818983
KEGG:ban:BA_4560 KEGG:bar:GBAA_4560 PATRIC:18786704
ProtClustDB:CLSK2517057 BioCyc:BANT261594:GJ7F-4435-MONOMER
Uniprot:Q81LQ2
Length = 97
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
T K+K+ L + AH L + VGK GV + ++ +TLEA EL K+ + + C +
Sbjct: 3 TGKQKRFLRAQAHHLTPIFQ---VGKGGVNENMIKQIADTLEARELFKVSVLQNCEFDRR 59
Query: 90 DVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + + +V IG T+++Y+ S
Sbjct: 60 EVAEELAKGARAEIVQVIGSTIVLYKES 87
>UNIPROTKB|Q71ZI1 [details] [associations]
symbol:LMOf2365_1508 "Putative uncharacterized protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001890 InterPro:IPR017924 Pfam:PF01985
ProDom:PD010559 PROSITE:PS51295 SMART:SM01103 GO:GO:0003723
EMBL:AE017262 GenomeReviews:AE017262_GR Gene3D:3.30.110.60
SUPFAM:SSF75471 eggNOG:COG1534 HOGENOM:HOG000016279 KO:K07574
TIGRFAMs:TIGR00253 RefSeq:YP_014106.1 ProteinModelPortal:Q71ZI1
STRING:Q71ZI1 GeneID:2797790 KEGG:lmf:LMOf2365_1508 PATRIC:20324255
OMA:QNCEEDR ProtClustDB:CLSK2516841 Uniprot:Q71ZI1
Length = 96
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 28/95 (29%), Positives = 55/95 (57%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
T +K+ L AH++ + VGK V+ ++ E LEA EL+KI I + C + +
Sbjct: 3 TATQKRFLRKEAHNIQPIFQ---VGKGSVSPNLIIHVKEALEARELIKISILQNCEEDKQ 59
Query: 90 DVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
V +++ +G+ +V IG+T+I+Y+ S+ + +++
Sbjct: 60 TVAEKISARSGAEIVQVIGRTIILYKTSVNKQQIK 94
>UNIPROTKB|P0AGK4 [details] [associations]
symbol:yhbY "predicted RNA-binding protein" species:83333
"Escherichia coli K-12" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001890
InterPro:IPR017924 Pfam:PF01985 ProDom:PD010559 PROSITE:PS51295
SMART:SM01103 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U18997
GO:GO:0003723 Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:U01376
EMBL:X54718 PIR:F65108 RefSeq:NP_417647.1 RefSeq:YP_491365.1
PDB:1LN4 PDBsum:1LN4 ProteinModelPortal:P0AGK4 SMR:P0AGK4
DIP:DIP-47893N IntAct:P0AGK4 MINT:MINT-1224994 PRIDE:P0AGK4
EnsemblBacteria:EBESCT00000004208 EnsemblBacteria:EBESCT00000016210
GeneID:12932801 GeneID:947688 KEGG:ecj:Y75_p3100 KEGG:eco:b3180
PATRIC:32121778 EchoBASE:EB2646 EcoGene:EG12794 eggNOG:COG1534
HOGENOM:HOG000016279 KO:K07574 OMA:NKQLSNV ProtClustDB:PRK10343
BioCyc:EcoCyc:EG12794-MONOMER BioCyc:ECOL316407:JW3147-MONOMER
EvolutionaryTrace:P0AGK4 Genevestigator:P0AGK4 TIGRFAMs:TIGR00253
Uniprot:P0AGK4
Length = 97
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/92 (34%), Positives = 55/92 (59%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI T E +
Sbjct: 4 STKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKI-ATEDRETK 59
Query: 90 D-VVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
+V+ + TG+ V IG+T+++YRP+ R
Sbjct: 60 TLIVEAIVRETGACNVQVIGKTLVLYRPTKER 91
>UNIPROTKB|Q74DQ2 [details] [associations]
symbol:yhbY "RNA-binding protein YhbY" species:243231
"Geobacter sulfurreducens PCA" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001890
InterPro:IPR017924 Pfam:PF01985 ProDom:PD010559 PROSITE:PS51295
SMART:SM01103 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000016279 KO:K07574
TIGRFAMs:TIGR00253 OMA:QNCEEDR RefSeq:NP_952316.1
ProteinModelPortal:Q74DQ2 GeneID:2685933 KEGG:gsu:GSU1263
PATRIC:22025297 ProtClustDB:CLSK2522232
BioCyc:GSUL243231:GH27-1216-MONOMER Uniprot:Q74DQ2
Length = 98
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/98 (30%), Positives = 53/98 (54%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
T K+K+ L HSL + +GK +++ +V E LE +EL+K+KI +C +
Sbjct: 3 TGKQKRHLRGLGHSLAPVIT---IGKGEISEALVKETDEALEHHELIKVKILESCLLDRH 59
Query: 90 DVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKK 127
+ ++L A G+ V +G+T +++R + KLE K
Sbjct: 60 EAAEELASACGAEVAQVLGRTFLLFRRA-QEPKLELPK 96
>UNIPROTKB|Q97P93 [details] [associations]
symbol:SP_1748 "Putative uncharacterized protein"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001890
InterPro:IPR017924 Pfam:PF01985 ProDom:PD010559 PROSITE:PS51295
SMART:SM01103 GO:GO:0003723 EMBL:AE005672 GenomeReviews:AE005672_GR
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000016279 KO:K07574
TIGRFAMs:TIGR00253 HSSP:P42550 PIR:G95203 PIR:G98070
RefSeq:NP_346184.1 ProteinModelPortal:Q97P93
EnsemblBacteria:EBSTRT00000026692 GeneID:931085 KEGG:spn:SP_1748
PATRIC:19707947 OMA:VQAIGNK ProtClustDB:CLSK2517797 Uniprot:Q97P93
Length = 103
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 31/98 (31%), Positives = 56/98 (57%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
T K++ L S AH+L ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 4 TSKQRAFLNSQAHTLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENIH 60
Query: 90 DVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKK 127
+V + LEE G V +IG+ +I+++ S K E +K
Sbjct: 61 EVAEILEEEIGVDTVQKIGRILILFKQS---SKKENRK 95
>TIGR_CMR|GSU_1263 [details] [associations]
symbol:GSU_1263 "conserved hypothetical protein TIGR00253"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 InterPro:IPR017924 Pfam:PF01985 ProDom:PD010559
PROSITE:PS51295 SMART:SM01103 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.30.110.60 SUPFAM:SSF75471
HOGENOM:HOG000016279 KO:K07574 TIGRFAMs:TIGR00253 OMA:QNCEEDR
RefSeq:NP_952316.1 ProteinModelPortal:Q74DQ2 GeneID:2685933
KEGG:gsu:GSU1263 PATRIC:22025297 ProtClustDB:CLSK2522232
BioCyc:GSUL243231:GH27-1216-MONOMER Uniprot:Q74DQ2
Length = 98
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/98 (30%), Positives = 53/98 (54%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
T K+K+ L HSL + +GK +++ +V E LE +EL+K+KI +C +
Sbjct: 3 TGKQKRHLRGLGHSLAPVIT---IGKGEISEALVKETDEALEHHELIKVKILESCLLDRH 59
Query: 90 DVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKK 127
+ ++L A G+ V +G+T +++R + KLE K
Sbjct: 60 EAAEELASACGAEVAQVLGRTFLLFRRA-QEPKLELPK 96
>UNIPROTKB|Q8EHM4 [details] [associations]
symbol:yhbY "Putative RNA-binding protein YhbY"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 InterPro:IPR017924 Pfam:PF01985 ProDom:PD010559
PROSITE:PS51295 SMART:SM01103 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR Gene3D:3.30.110.60 SUPFAM:SSF75471
HOGENOM:HOG000016279 KO:K07574 OMA:NKQLSNV TIGRFAMs:TIGR00253
HSSP:P71376 RefSeq:NP_716820.1 ProteinModelPortal:Q8EHM4 SMR:Q8EHM4
GeneID:1169023 KEGG:son:SO_1195 PATRIC:23522044
ProtClustDB:CLSK2516781 Uniprot:Q8EHM4
Length = 99
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
T K+K+ L AH+L + L+G +G+T+GV+ L +EL+K+K+ + EL+
Sbjct: 4 TTKQKQHLKGLAHNLKPVV---LLGANGLTEGVLAEIESALAYHELIKVKV-ASADRELK 59
Query: 90 D-VVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
+ +V + T SA V IG ++IYR S MK+
Sbjct: 60 NAIVDAIVRETQSAKVQLIGHILVIYRQS-PEMKI 93
>TIGR_CMR|SO_1195 [details] [associations]
symbol:SO_1195 "conserved hypothetical protein TIGR00253"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001890 InterPro:IPR017924 Pfam:PF01985 ProDom:PD010559
PROSITE:PS51295 SMART:SM01103 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR Gene3D:3.30.110.60 SUPFAM:SSF75471
HOGENOM:HOG000016279 KO:K07574 OMA:NKQLSNV TIGRFAMs:TIGR00253
HSSP:P71376 RefSeq:NP_716820.1 ProteinModelPortal:Q8EHM4 SMR:Q8EHM4
GeneID:1169023 KEGG:son:SO_1195 PATRIC:23522044
ProtClustDB:CLSK2516781 Uniprot:Q8EHM4
Length = 99
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
T K+K+ L AH+L + L+G +G+T+GV+ L +EL+K+K+ + EL+
Sbjct: 4 TTKQKQHLKGLAHNLKPVV---LLGANGLTEGVLAEIESALAYHELIKVKV-ASADRELK 59
Query: 90 D-VVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
+ +V + T SA V IG ++IYR S MK+
Sbjct: 60 NAIVDAIVRETQSAKVQLIGHILVIYRQS-PEMKI 93
>UNIPROTKB|Q9KU88 [details] [associations]
symbol:VC_0635 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001890 InterPro:IPR017924 Pfam:PF01985
ProDom:PD010559 PROSITE:PS51295 SMART:SM01103 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 Gene3D:3.30.110.60
SUPFAM:SSF75471 KO:K07574 TIGRFAMs:TIGR00253 HSSP:P42550
OMA:QNCEEDR PIR:C82299 RefSeq:NP_230284.1 ProteinModelPortal:Q9KU88
SMR:Q9KU88 DNASU:2615423 GeneID:2615423 KEGG:vch:VC0635
PATRIC:20080379 ProtClustDB:CLSK2517503 Uniprot:Q9KU88
Length = 98
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/93 (30%), Positives = 51/93 (54%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L AH+L + L+G +G+T+ V+ L+ +EL+K+K+ + +
Sbjct: 6 KQKQHLKGLAHNLKPVV---LMGANGLTEAVLAEIEIALDHHELIKVKVVSEDRETKQLI 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
V + TG+ V IG+ +++YR S R K+E
Sbjct: 63 VDAIVRETGAEKVQVIGKVLVLYRQSQQR-KIE 94
>TIGR_CMR|VC_0635 [details] [associations]
symbol:VC_0635 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001890
InterPro:IPR017924 Pfam:PF01985 ProDom:PD010559 PROSITE:PS51295
SMART:SM01103 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 KO:K07574 TIGRFAMs:TIGR00253
HSSP:P42550 OMA:QNCEEDR PIR:C82299 RefSeq:NP_230284.1
ProteinModelPortal:Q9KU88 SMR:Q9KU88 DNASU:2615423 GeneID:2615423
KEGG:vch:VC0635 PATRIC:20080379 ProtClustDB:CLSK2517503
Uniprot:Q9KU88
Length = 98
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/93 (30%), Positives = 51/93 (54%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L AH+L + L+G +G+T+ V+ L+ +EL+K+K+ + +
Sbjct: 6 KQKQHLKGLAHNLKPVV---LMGANGLTEAVLAEIEIALDHHELIKVKVVSEDRETKQLI 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
V + TG+ V IG+ +++YR S R K+E
Sbjct: 63 VDAIVRETGAEKVQVIGKVLVLYRQSQQR-KIE 94
>UNIPROTKB|Q47YJ2 [details] [associations]
symbol:CPS_3454 "Putative uncharacterized protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 InterPro:IPR017924 Pfam:PF01985 ProDom:PD010559
PROSITE:PS51295 SMART:SM01103 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:3.30.110.60 SUPFAM:SSF75471
eggNOG:COG1534 HOGENOM:HOG000016279 KO:K07574 OMA:NKQLSNV
TIGRFAMs:TIGR00253 RefSeq:YP_270128.1 ProteinModelPortal:Q47YJ2
SMR:Q47YJ2 STRING:Q47YJ2 GeneID:3519045 KEGG:cps:CPS_3454
PATRIC:21469855 BioCyc:CPSY167879:GI48-3482-MONOMER Uniprot:Q47YJ2
Length = 98
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+ + L AH L + L+G +G+T+ VV L +EL+K+KI +
Sbjct: 6 KQIQHLRGVAHPLKPVV---LLGNNGLTEAVVAEIDYALNHHELIKVKIPTDDKETKALI 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
V+ + T S V IG+T++IYR S
Sbjct: 63 VEAICRETKSIQVQVIGKTLVIYRKS 88
>UNIPROTKB|Q48E68 [details] [associations]
symbol:PSPPH_4200 "Uncharacterized protein" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 Pfam:PF01985 ProDom:PD010559 PROSITE:PS51295
SMART:SM01103 GO:GO:0003723 EMBL:CP000058 GenomeReviews:CP000058_GR
Gene3D:3.30.110.60 SUPFAM:SSF75471 eggNOG:COG1534
HOGENOM:HOG000016279 KO:K07574 OMA:NKQLSNV RefSeq:YP_276320.1
ProteinModelPortal:Q48E68 STRING:Q48E68 GeneID:3557696
KEGG:psp:PSPPH_4200 PATRIC:19977871 ProtClustDB:CLSK2516946
Uniprot:Q48E68
Length = 103
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
T ++KK+ S H L L +V +G+T+GV+ L +EL+KIK++
Sbjct: 4 TPEQKKQYKSIGHHLKPVL---IVADNGLTEGVLAELERALSDHELIKIKLNILDRESRL 60
Query: 90 DVVKQLEEATGSAVVSQIGQTVIIYR 115
V +L +A + +V IG+ +IYR
Sbjct: 61 GAVAELCKAGSADLVQVIGKMALIYR 86
>TIGR_CMR|CPS_3454 [details] [associations]
symbol:CPS_3454 "conserved hypothetical protein TIGR00253"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 InterPro:IPR017924 Pfam:PF01985 ProDom:PD010559
PROSITE:PS51295 SMART:SM01103 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:3.30.110.60 SUPFAM:SSF75471
eggNOG:COG1534 HOGENOM:HOG000016279 KO:K07574 OMA:NKQLSNV
TIGRFAMs:TIGR00253 RefSeq:YP_270128.1 ProteinModelPortal:Q47YJ2
SMR:Q47YJ2 STRING:Q47YJ2 GeneID:3519045 KEGG:cps:CPS_3454
PATRIC:21469855 BioCyc:CPSY167879:GI48-3482-MONOMER Uniprot:Q47YJ2
Length = 98
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+ + L AH L + L+G +G+T+ VV L +EL+K+KI +
Sbjct: 6 KQIQHLRGVAHPLKPVV---LLGNNGLTEAVVAEIDYALNHHELIKVKIPTDDKETKALI 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
V+ + T S V IG+T++IYR S
Sbjct: 63 VEAICRETKSIQVQVIGKTLVIYRKS 88
>UNIPROTKB|Q4KIG4 [details] [associations]
symbol:PFL_0834 "RNA-binding protein, YhbY family"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 Pfam:PF01985 ProDom:PD010559 PROSITE:PS51295
SMART:SM01103 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
Gene3D:3.30.110.60 SUPFAM:SSF75471 eggNOG:COG1534
HOGENOM:HOG000016279 KO:K07574 OMA:NKQLSNV ProtClustDB:CLSK2516946
RefSeq:YP_257969.1 ProteinModelPortal:Q4KIG4 STRING:Q4KIG4
GeneID:3481417 KEGG:pfl:PFL_0834 PATRIC:19870847
BioCyc:PFLU220664:GIX8-838-MONOMER Uniprot:Q4KIG4
Length = 102
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
T ++KK+ S H L L V +G+T+GV+ L +EL+KIK++
Sbjct: 4 TQEQKKQYKSIGHHLKPVLT---VADNGLTEGVLAELERALSDHELIKIKLNILERESRL 60
Query: 90 DVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + QL +A + +V IG+ +IYR
Sbjct: 61 EAIAQLCKAGKADLVQVIGKMALIYR 86
>UNIPROTKB|Q87WP6 [details] [associations]
symbol:PSPTO_4499 "Uncharacterized protein" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 Pfam:PF01985 ProDom:PD010559 PROSITE:PS51295
SMART:SM01103 GO:GO:0003723 EMBL:AE016853 GenomeReviews:AE016853_GR
Gene3D:3.30.110.60 SUPFAM:SSF75471 eggNOG:COG1534
HOGENOM:HOG000016279 KO:K07574 OMA:NKQLSNV HSSP:P42550
ProtClustDB:CLSK2516946 RefSeq:NP_794252.1
ProteinModelPortal:Q87WP6 GeneID:1186182 KEGG:pst:PSPTO_4499
PATRIC:20000514 BioCyc:PSYR223283:GJIX-4568-MONOMER Uniprot:Q87WP6
Length = 103
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
T ++KK+ S H L L V +G+T+GV+ L +EL+KIK++
Sbjct: 4 TPEQKKQYKSIGHHLKPVLT---VADNGLTEGVLAELERALSDHELIKIKLNILDRESRL 60
Query: 90 DVVKQLEEATGSAVVSQIGQTVIIYR 115
V +L +A + +V IG+ +IYR
Sbjct: 61 GAVAELCKAGSADLVQVIGKMALIYR 86
>UNIPROTKB|Q607B1 [details] [associations]
symbol:MCA1850 "Putative uncharacterized protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 InterPro:IPR017924 Pfam:PF01985 ProDom:PD010559
PROSITE:PS51295 SMART:SM01103 GO:GO:0003723 EMBL:AE017282
GenomeReviews:AE017282_GR Gene3D:3.30.110.60 SUPFAM:SSF75471
HOGENOM:HOG000016279 KO:K07574 TIGRFAMs:TIGR00253
RefSeq:YP_114287.1 ProteinModelPortal:Q607B1 GeneID:3103678
KEGG:mca:MCA1850 PATRIC:22607546 OMA:IRERCHA Uniprot:Q607B1
Length = 96
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 22/91 (24%), Positives = 49/91 (53%)
Query: 30 TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE 89
T + +++L + AH L + + G++G+T GV+ LE +EL+K++++
Sbjct: 5 TPELRRQLRAKAHKLKPVV---ITGQAGITPGVLGEIDMALEHHELIKVRVNAGDRETRA 61
Query: 90 DVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
++ Q+ +G+ +V +G + ++R S R
Sbjct: 62 EMTAQICGESGAELVQSLGHVITLFRKSPER 92
>TAIR|locus:2094997 [details] [associations]
symbol:EMB1865 "embryo defective 1865" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009737 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB026658
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000241574
EMBL:AY063908 IPI:IPI00520842 RefSeq:NP_188468.1 UniGene:At.20890
ProteinModelPortal:Q9LS51 SMR:Q9LS51 STRING:Q9LS51 PaxDb:Q9LS51
PRIDE:Q9LS51 EnsemblPlants:AT3G18390.1 GeneID:821368
KEGG:ath:AT3G18390 TAIR:At3g18390 eggNOG:NOG326934
InParanoid:Q9LS51 OMA:DMKTAHE PhylomeDB:Q9LS51
ProtClustDB:CLSN2684381 ArrayExpress:Q9LS51 Genevestigator:Q9LS51
Uniprot:Q9LS51
Length = 848
Score = 99 (39.9 bits), Expect = 0.00051, P = 0.00051
Identities = 28/116 (24%), Positives = 51/116 (43%)
Query: 1 EEKKTVVVGSEAVEEVXXXXXXXXXXXXXTVKEKKELASYAHSLGKKLKCQL-VGKSGVT 59
E+ VVG V + TV E EL G L+ ++ + K+G+T
Sbjct: 213 EQAAERVVGEGGVAVMQKRRARAPSLAELTV-EDSELRRLRRD-GMYLRVRINIPKAGLT 270
Query: 60 DGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
V+ +T EL+++K H +++ + +E TG V+ + G +++YR
Sbjct: 271 QAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGSVMVVYR 326
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.128 0.331 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 171 130 0.00091 102 3 10 23 0.47 31
29 0.42 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 562 (60 KB)
Total size of DFA: 134 KB (2084 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.28u 0.11s 19.39t Elapsed: 00:00:01
Total cpu time: 19.28u 0.11s 19.39t Elapsed: 00:00:01
Start: Mon May 20 20:19:48 2013 End: Mon May 20 20:19:49 2013