BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038665
(171 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449515613|ref|XP_004164843.1| PREDICTED: uncharacterized protein LOC101225856 [Cucumis sativus]
Length = 279
Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 117/140 (83%), Gaps = 1/140 (0%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+P LT+KEKKELASYAH LGKKLK QLVGKSGVT G+ TSFIETLEANELLKIKI CP
Sbjct: 136 IPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKILGNCP 195
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKE-SKLKPL 144
ELEDVV++L E+TGS VV+QIG+TVIIYRPS+T+MK EE+K++AR+VY+RKE ++K +
Sbjct: 196 EELEDVVRKLAESTGSVVVNQIGRTVIIYRPSITKMKAEEEKRRARKVYMRKEPDRVKSI 255
Query: 145 LLKKAGVSRLSGRRRRGSSR 164
L KK R S R RRG+SR
Sbjct: 256 LQKKIETPRSSNRGRRGTSR 275
>gi|449461613|ref|XP_004148536.1| PREDICTED: uncharacterized protein LOC101213060 [Cucumis sativus]
Length = 279
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 97/140 (69%), Positives = 117/140 (83%), Gaps = 1/140 (0%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+P LT+KEKKELASYAH LGKKLK QLVGKSGVT G+ TSFIETLEANELLKIKI CP
Sbjct: 136 IPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKILGNCP 195
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKE-SKLKPL 144
ELEDVV++L E+TGS VV+QIG+TVIIYRPS+T+MK EE+K++AR+VY+RKE ++K +
Sbjct: 196 EELEDVVRKLAESTGSVVVNQIGRTVIIYRPSITKMKAEEEKRRARKVYMRKEPDRVKSI 255
Query: 145 LLKKAGVSRLSGRRRRGSSR 164
L KK + S R RRG+SR
Sbjct: 256 LQKKIETPQSSNRGRRGTSR 275
>gi|356538720|ref|XP_003537849.1| PREDICTED: uncharacterized protein LOC100779359 [Glycine max]
Length = 260
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/145 (66%), Positives = 115/145 (79%), Gaps = 7/145 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
L +P L+VKE+KELASYAHSLG KLK QLVGKSGVT + TSFIETLEANELLKIKIHRT
Sbjct: 116 LEVPSLSVKERKELASYAHSLGDKLKTQLVGKSGVTPNLATSFIETLEANELLKIKIHRT 175
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKESKLKP 143
CPGEL+DVVKQLEEATGS V QIG+T+IIYRPSL++MK EEKK+QAR + ++K+ K +
Sbjct: 176 CPGELDDVVKQLEEATGSVAVGQIGRTLIIYRPSLSKMKAEEKKKQARNLILKKQVKQRL 235
Query: 144 LLLKKAGVSRL-------SGRRRRG 161
+ K V +L SG++RR
Sbjct: 236 VNKSKEQVPKLSWPGSSWSGKKRRA 260
>gi|225427732|ref|XP_002265886.1| PREDICTED: uncharacterized protein LOC100243481 [Vitis vinifera]
gi|297744749|emb|CBI38011.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 112/135 (82%), Gaps = 4/135 (2%)
Query: 11 EAVEEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETL 70
E+ E VK SR P+ LT+KEKKELASYAHSLGKKLKCQLVGK GVT V ++FIE L
Sbjct: 131 ESEETVKETSR---PV-NLTIKEKKELASYAHSLGKKLKCQLVGKQGVTASVASAFIENL 186
Query: 71 EANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQA 130
E+NELLKIKIH TCPGEL DVVKQLEE+TGS VV QIG++VI+YRPS+T++K EEK++QA
Sbjct: 187 ESNELLKIKIHGTCPGELPDVVKQLEESTGSVVVGQIGRSVILYRPSVTKLKAEEKRKQA 246
Query: 131 RRVYVRKESKLKPLL 145
RRVYVRK + KP L
Sbjct: 247 RRVYVRKGAIFKPKL 261
>gi|147771494|emb|CAN73653.1| hypothetical protein VITISV_005730 [Vitis vinifera]
Length = 239
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 112/135 (82%), Gaps = 4/135 (2%)
Query: 11 EAVEEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETL 70
E+ E VK SR P+ LT+KEKKELASYAHSLGKKLKCQLVGK GVT V ++FIE L
Sbjct: 100 ESEETVKETSR---PV-NLTIKEKKELASYAHSLGKKLKCQLVGKQGVTASVASAFIENL 155
Query: 71 EANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQA 130
E+NELLKIKIH TCPGEL DVVKQLEE+TGS VV QIG++VI+YRPS+T++K EEK++QA
Sbjct: 156 ESNELLKIKIHGTCPGELPDVVKQLEESTGSVVVGQIGRSVILYRPSVTKLKAEEKRKQA 215
Query: 131 RRVYVRKESKLKPLL 145
RRVYVRK + KP L
Sbjct: 216 RRVYVRKGAIFKPKL 230
>gi|255637509|gb|ACU19081.1| unknown [Glycine max]
Length = 260
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/145 (65%), Positives = 112/145 (77%), Gaps = 7/145 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
L +P L+VKE+KELASYAHSLG KLK QLVGKSGVT + TSFIETLEANELLKIKIHRT
Sbjct: 116 LEVPSLSVKERKELASYAHSLGDKLKTQLVGKSGVTPNLATSFIETLEANELLKIKIHRT 175
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKESKLKP 143
CPGEL+DVVKQLEEATGS V QIG+T IIYRPS ++MK EEKK+QAR + +K+ K +
Sbjct: 176 CPGELDDVVKQLEEATGSVAVGQIGRTFIIYRPSFSKMKAEEKKKQARNLIFKKQVKQRL 235
Query: 144 LLLKKAGVSRL-------SGRRRRG 161
+ K V +L SG++RR
Sbjct: 236 VNKSKEQVPKLSWPGSSWSGKKRRA 260
>gi|255543825|ref|XP_002512975.1| hypothetical protein RCOM_1449540 [Ricinus communis]
gi|223547986|gb|EEF49478.1| hypothetical protein RCOM_1449540 [Ricinus communis]
Length = 311
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/146 (65%), Positives = 115/146 (78%), Gaps = 13/146 (8%)
Query: 21 RSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLE--------- 71
R+ +P LTVKEKKELASYA+SLGKKLK QLVGKSGVTD V TSFIETL+
Sbjct: 155 RNGFKVPNLTVKEKKELASYANSLGKKLKSQLVGKSGVTDNVATSFIETLKQMSXRIVWC 214
Query: 72 ANELL----KIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKK 127
A +L +IKIHRTCPGELEDVV++L+EATGS VV QIG+TVIIYRPSL++M+ EEK+
Sbjct: 215 AKPVLECSEQIKIHRTCPGELEDVVQRLQEATGSVVVGQIGRTVIIYRPSLSKMEAEEKR 274
Query: 128 QQARRVYVRKESKLKPLLLKKAGVSR 153
+QARR+YVRKE KLKP+ L ++R
Sbjct: 275 RQARRIYVRKEPKLKPISLILQHIAR 300
>gi|224105319|ref|XP_002313766.1| predicted protein [Populus trichocarpa]
gi|222850174|gb|EEE87721.1| predicted protein [Populus trichocarpa]
Length = 99
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/99 (85%), Positives = 91/99 (91%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LTVKEKKELASYAH LGKKLK QL+GKSG TD V TSFIETLEANELLKIKIHRTCPGEL
Sbjct: 1 LTVKEKKELASYAHGLGKKLKSQLIGKSGFTDNVATSFIETLEANELLKIKIHRTCPGEL 60
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKK 127
EDVV++LEEATGS VV QIG+TVIIYRPSLT+MK EEK+
Sbjct: 61 EDVVRRLEEATGSVVVGQIGRTVIIYRPSLTKMKAEEKR 99
>gi|388496390|gb|AFK36261.1| unknown [Lotus japonicus]
Length = 282
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/114 (74%), Positives = 97/114 (85%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
L +P LTVKEKKELAS+AHSL KKLK QLVGKSGVT + TSFIETLEANELLKIK+HRT
Sbjct: 167 LEVPSLTVKEKKELASFAHSLWKKLKSQLVGKSGVTSNLATSFIETLEANELLKIKVHRT 226
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRK 137
CPGELED VKQLEE TGS VSQIG+T+IIY+PSLT++K EEKK+ + + Y K
Sbjct: 227 CPGELEDAVKQLEELTGSVTVSQIGRTLIIYKPSLTKLKAEEKKKTSSQPYSEK 280
>gi|357473479|ref|XP_003607024.1| CRS1 / YhbY domain containing protein [Medicago truncatula]
gi|355508079|gb|AES89221.1| CRS1 / YhbY domain containing protein [Medicago truncatula]
Length = 285
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 102/117 (87%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
L +P L+VKE+KEL SYAHSLGKKL QLVGKSGVT +VT+F + LEANELLKIKIH +
Sbjct: 140 LEVPSLSVKERKELGSYAHSLGKKLSTQLVGKSGVTPNLVTAFSDNLEANELLKIKIHGS 199
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKESK 140
CPGELEDVVKQLEE+TGS V QIG+T+I+YRPSL+++K+EEKK+Q R++++ K++K
Sbjct: 200 CPGELEDVVKQLEESTGSVTVGQIGRTLILYRPSLSKLKVEEKKKQVRKLFLEKQNK 256
>gi|346465671|gb|AEO32680.1| hypothetical protein [Amblyomma maculatum]
Length = 211
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/108 (71%), Positives = 88/108 (81%), Gaps = 1/108 (0%)
Query: 25 PLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTC 84
P PKLTVKEKKELASYAHSLGKKLK Q VGKSGVT + SF+E LE+NELLK+K+H TC
Sbjct: 86 PPPKLTVKEKKELASYAHSLGKKLKSQQVGKSGVTPSLAASFVENLESNELLKLKVHGTC 145
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
PGEL DV+KQLE ATGS V QIG++VI+YRPSL++MK E ARR
Sbjct: 146 PGELIDVIKQLEVATGSVAVDQIGRSVILYRPSLSKMKKRE-AASARR 192
>gi|326499844|dbj|BAJ90757.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 286
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/118 (61%), Positives = 89/118 (75%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
LP PKL VKE+KELASYAH LGKKLK Q VGK GVT +VT+F + LE+NELLK+KIH
Sbjct: 123 LPRPKLDVKERKELASYAHGLGKKLKSQQVGKGGVTPNLVTAFTDNLESNELLKLKIHGN 182
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKESKL 141
CPGEL DV++QLEE+TGS V QIG++VI+YRPS ++MK E+ + R Y R +
Sbjct: 183 CPGELPDVIRQLEESTGSIAVDQIGRSVILYRPSSSKMKKREEVARNREEYARNNPRF 240
>gi|297824987|ref|XP_002880376.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326215|gb|EFH56635.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 116
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/103 (71%), Positives = 87/103 (84%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
L +L+ KEK++LASYAH+LG KLK QLVGKSGVTD VV SFIETLE NELLK+KIHRTCP
Sbjct: 10 LLELSAKEKRKLASYAHTLGDKLKSQLVGKSGVTDSVVLSFIETLEKNELLKVKIHRTCP 69
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQ 128
GELED++ LEEATGS V QI +TVI YRPS T++K +EKK+
Sbjct: 70 GELEDMILHLEEATGSVSVGQIARTVIFYRPSPTKLKADEKKK 112
>gi|240254502|ref|NP_179731.4| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|330252071|gb|AEC07165.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 222
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/102 (69%), Positives = 87/102 (85%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+L+ KEK++LASYAH LG KLK QLVGKSGVTD VV SF+ETLE NELLK+KIHRTCPGE
Sbjct: 118 ELSAKEKRKLASYAHHLGDKLKSQLVGKSGVTDSVVLSFVETLEKNELLKVKIHRTCPGE 177
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQ 129
LED++ +LEEATGS V QI +TVI+YRPS T++K +E K++
Sbjct: 178 LEDMILRLEEATGSVSVGQIARTVILYRPSPTKLKADEDKKR 219
>gi|212723242|ref|NP_001132805.1| uncharacterized protein LOC100194294 [Zea mays]
gi|194695436|gb|ACF81802.1| unknown [Zea mays]
gi|413933849|gb|AFW68400.1| CRS1 / YhbY domain containing protein [Zea mays]
Length = 259
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 91/115 (79%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
LP PKL+VKE+KELASYAH LGKKLK Q VGKSGVT +V++F + LE+NELLK+KIH
Sbjct: 91 LPRPKLSVKERKELASYAHGLGKKLKSQQVGKSGVTPNLVSAFSDNLESNELLKLKIHGN 150
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKE 138
CPGEL DV+ QLEE+TGS V QIG++VI+YRPS ++MK +++ + R + R E
Sbjct: 151 CPGELPDVILQLEESTGSIAVDQIGRSVILYRPSTSKMKKKQQVDENARRFSRTE 205
>gi|195623148|gb|ACG33404.1| CRS1 / YhbY domain containing protein [Zea mays]
Length = 259
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 91/115 (79%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
LP PKL+VKE+KELASYAH LGKKLK Q VGKSGVT +V++F + LE+NELLK+KIH
Sbjct: 91 LPRPKLSVKERKELASYAHGLGKKLKSQQVGKSGVTPNLVSAFSDNLESNELLKLKIHGN 150
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKE 138
CPGEL DV+ QLEE+TGS V QIG++VI+YRPS ++MK +++ + R + R E
Sbjct: 151 CPGELPDVILQLEESTGSIAVDQIGRSVILYRPSTSKMKKKQQVDENARRFSRTE 205
>gi|242033975|ref|XP_002464382.1| hypothetical protein SORBIDRAFT_01g017260 [Sorghum bicolor]
gi|241918236|gb|EER91380.1| hypothetical protein SORBIDRAFT_01g017260 [Sorghum bicolor]
Length = 261
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 91/115 (79%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
LP PKL+VKE+KELASYAH LGKKLK Q VGKSGVT +V++F + LE+NELLK+KIH
Sbjct: 95 LPRPKLSVKERKELASYAHGLGKKLKSQQVGKSGVTPNLVSAFSDNLESNELLKLKIHGN 154
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKE 138
CPGEL DV+ QLEE+TGS V QIG++VI+YRPS ++MK +++ + R + R E
Sbjct: 155 CPGELPDVILQLEESTGSIAVDQIGRSVILYRPSTSKMKKKQQVAENARRFSRPE 209
>gi|4567270|gb|AAD23683.1| unknown protein [Arabidopsis thaliana]
Length = 151
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/102 (69%), Positives = 87/102 (85%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+L+ KEK++LASYAH LG KLK QLVGKSGVTD VV SF+ETLE NELLK+KIHRTCPGE
Sbjct: 14 ELSAKEKRKLASYAHHLGDKLKSQLVGKSGVTDSVVLSFVETLEKNELLKVKIHRTCPGE 73
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQ 129
LED++ +LEEATGS V QI +TVI+YRPS T++K +E K++
Sbjct: 74 LEDMILRLEEATGSVSVGQIARTVILYRPSPTKLKADEDKKR 115
>gi|125532621|gb|EAY79186.1| hypothetical protein OsI_34297 [Oryza sativa Indica Group]
Length = 251
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 88/113 (77%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
LP PKL+VKE+KELASYAH LGK+LK Q VGK GVT VV +F + LE+NELLK+KIH
Sbjct: 96 LPRPKLSVKERKELASYAHGLGKRLKSQQVGKGGVTPSVVAAFNDNLESNELLKLKIHLN 155
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVR 136
CPGEL DV+ QLEE+TGS V QIG++VI+YRPS ++MK E+ + R +VR
Sbjct: 156 CPGELPDVILQLEESTGSIAVDQIGRSVILYRPSTSKMKKREESARNRTRFVR 208
>gi|115482902|ref|NP_001065044.1| Os10g0512500 [Oryza sativa Japonica Group]
gi|40736983|gb|AAG13565.2|AC073867_11 hypothetical protein [Oryza sativa Japonica Group]
gi|78708905|gb|ABB47880.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
gi|113639653|dbj|BAF26958.1| Os10g0512500 [Oryza sativa Japonica Group]
gi|125575381|gb|EAZ16665.1| hypothetical protein OsJ_32140 [Oryza sativa Japonica Group]
gi|215740754|dbj|BAG97410.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 252
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 88/113 (77%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
LP PKL+VKE+KELASYAH LGK+LK Q VGK GVT VV +F + LE+NELLK+KIH
Sbjct: 97 LPRPKLSVKERKELASYAHGLGKRLKSQQVGKGGVTPSVVAAFNDNLESNELLKLKIHLN 156
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVR 136
CPGEL DV+ QLEE+TGS V QIG++VI+YRPS ++MK E+ + R +VR
Sbjct: 157 CPGELPDVILQLEESTGSIAVDQIGRSVILYRPSTSKMKKREESARNRTRFVR 209
>gi|15234935|ref|NP_195615.1| putative RNA-binding protein containing KH domain protein
[Arabidopsis thaliana]
gi|4539323|emb|CAB38824.1| putative protein [Arabidopsis thaliana]
gi|7270887|emb|CAB80567.1| putative protein [Arabidopsis thaliana]
gi|26452052|dbj|BAC43116.1| unknown protein [Arabidopsis thaliana]
gi|28950859|gb|AAO63353.1| At4g39040 [Arabidopsis thaliana]
gi|332661610|gb|AEE87010.1| putative RNA-binding protein containing KH domain protein
[Arabidopsis thaliana]
Length = 296
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/113 (69%), Positives = 92/113 (81%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL++KEKKELASYAHSLG KLKCQLVGKSGVTD VV SF+ETLE NELLK+KI +T P E
Sbjct: 152 KLSIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLKVKIRKTSPDE 211
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKESK 140
LED V+ LEEATGS V QIG+TVI+YRPS T+MK E KK++ R+ + + K
Sbjct: 212 LEDAVQHLEEATGSVAVGQIGRTVILYRPSPTKMKAEAKKKEVERMSITRRQK 264
>gi|30692165|ref|NP_849521.1| putative RNA-binding protein containing KH domain protein
[Arabidopsis thaliana]
gi|332661611|gb|AEE87011.1| putative RNA-binding protein containing KH domain protein
[Arabidopsis thaliana]
Length = 280
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/113 (69%), Positives = 92/113 (81%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL++KEKKELASYAHSLG KLKCQLVGKSGVTD VV SF+ETLE NELLK+KI +T P E
Sbjct: 152 KLSIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLKVKIRKTSPDE 211
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKESK 140
LED V+ LEEATGS V QIG+TVI+YRPS T+MK E KK++ R+ + + K
Sbjct: 212 LEDAVQHLEEATGSVAVGQIGRTVILYRPSPTKMKAEAKKKEVERMSITRRQK 264
>gi|357146986|ref|XP_003574181.1| PREDICTED: uncharacterized protein LOC100826154 [Brachypodium
distachyon]
Length = 254
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 89/118 (75%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
LP PKL VKE+KELASYAH LGKKLK Q VGK GVT +V++F + LE+NELLK+KIH
Sbjct: 91 LPRPKLDVKERKELASYAHGLGKKLKSQQVGKGGVTPSLVSAFSDNLESNELLKLKIHGN 150
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKESKL 141
CPGEL DV+ QLEE+TGS V QIG++VI+YRPS ++MK E+ + R + R ++
Sbjct: 151 CPGELPDVILQLEESTGSIAVDQIGRSVILYRPSSSKMKKREEVARKREEFARNSTRF 208
>gi|297801994|ref|XP_002868881.1| hypothetical protein ARALYDRAFT_490673 [Arabidopsis lyrata subsp.
lyrata]
gi|297314717|gb|EFH45140.1| hypothetical protein ARALYDRAFT_490673 [Arabidopsis lyrata subsp.
lyrata]
Length = 287
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/92 (77%), Positives = 79/92 (85%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL++KEKKELASYAHSLG KLKCQLVGKSGVTD VV SF+ETLE NELLK+KI +T P E
Sbjct: 143 KLSIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLKVKIRKTSPDE 202
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLT 119
LED V+ LEEATGS V QIG+TVI+YRPS T
Sbjct: 203 LEDAVQHLEEATGSVAVGQIGRTVILYRPSPT 234
>gi|224285174|gb|ACN40314.1| unknown [Picea sitchensis]
Length = 249
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 94/127 (74%), Gaps = 4/127 (3%)
Query: 6 VVVGSEAVEEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTS 65
VVV S ++V +P+RS +P+LTVKEKKEL++YAHSLGKKLKC VGKSGVT V S
Sbjct: 109 VVVSSGEQKQVTNPARS---IPELTVKEKKELSAYAHSLGKKLKCHQVGKSGVTSSVEVS 165
Query: 66 FIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL-E 124
+ LEANEL+K+K+H TCP EL+ V +L+E T S VV QIG+T I+YRPS ++ E
Sbjct: 166 ISDALEANELIKLKVHNTCPDELDAVASRLQETTRSVVVGQIGRTFILYRPSPRKVPTSE 225
Query: 125 EKKQQAR 131
EKK+Q R
Sbjct: 226 EKKKQLR 232
>gi|168021235|ref|XP_001763147.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685630|gb|EDQ72024.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 274
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 9/141 (6%)
Query: 1 EEKKTVVVGSEAVEEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTD 60
E+++ V G E V +L KEKKEL +YAH LG + VGK G+T
Sbjct: 125 EQERNVASGGEKVRRT---------FRQLGNKEKKELRAYAHQLGNDICIHQVGKWGLTA 175
Query: 61 GVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
+T+ + LEANEL+KI++ EL D +LE TG+ +V ++G+T+++YRPS+ +
Sbjct: 176 NCITAISDALEANELIKIRVLDNLDEELADTASKLESKTGAQIVGKMGRTLLLYRPSMRK 235
Query: 121 MKLEEKKQQARRVYVRKESKL 141
+K + Q+ Y ++++ L
Sbjct: 236 LKAAQLAQEKAFKYQKRKTML 256
>gi|302766830|ref|XP_002966835.1| hypothetical protein SELMODRAFT_69356 [Selaginella moellendorffii]
gi|300164826|gb|EFJ31434.1| hypothetical protein SELMODRAFT_69356 [Selaginella moellendorffii]
Length = 103
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 63/101 (62%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ KEKKEL +AH LGK + VGK GVT + + LE NEL+K+++ CP +
Sbjct: 1 LSQKEKKELRGHAHRLGKSIALHHVGKWGVTPNSLKCLGDALEKNELMKVRVLDNCPTHI 60
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQ 129
V+ LE + VV +IG +++YRPSL + +++EKKQ+
Sbjct: 61 SQVMLDLEHGLEAQVVGKIGHVLLLYRPSLRKAEMDEKKQK 101
>gi|149391227|gb|ABR25631.1| crs1/yhby domain containing protein [Oryza sativa Indica Group]
Length = 108
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 50/65 (76%)
Query: 72 ANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQAR 131
+NELLK+KIH CPGEL DV+ QLEE+TGS V QIG++VI+YRPS ++MK E+ + R
Sbjct: 1 SNELLKLKIHLNCPGELPDVILQLEESTGSIAVDQIGRSVILYRPSTSKMKKREESARNR 60
Query: 132 RVYVR 136
+VR
Sbjct: 61 TRFVR 65
>gi|10140661|gb|AAG13496.1|AC068924_1 hypothetical protein [Oryza sativa Japonica Group]
Length = 151
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 44/54 (81%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLK 77
LP PKL+VKE+KELASYAH LGK+LK Q VGK GVT VV +F + LE+NELLK
Sbjct: 97 LPRPKLSVKERKELASYAHGLGKRLKSQQVGKGGVTPSVVAAFNDNLESNELLK 150
>gi|403379142|ref|ZP_10921199.1| hypothetical protein PJC66_04868 [Paenibacillus sp. JC66]
Length = 96
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+KK L S AHSL + VGK GV + ++TS E LE EL+KI + C +
Sbjct: 2 LTNKQKKFLRSLAHSLNPIFQ---VGKGGVNEAMITSISEALEVRELIKISVLNNCMEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
D+ QL E TG+ VV IG +++Y+ S + K+E
Sbjct: 59 HDIAAQLSEGTGAEVVQVIGNIIVLYKQSKEQPKIE 94
>gi|162452193|ref|YP_001614560.1| hypothetical protein sce3920 [Sorangium cellulosum So ce56]
gi|161162775|emb|CAN94080.1| hypothetical protein sce3920 [Sorangium cellulosum So ce56]
Length = 100
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+++ L + H L ++ +GK+G+TDGVV + LE +EL+K+++ CP EL
Sbjct: 3 LTGKQRRHLRALGHHLDPVVQ---LGKAGLTDGVVAAVDAALERHELVKVRLGTECPDEL 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+DV L E +AV +G+T+++YR
Sbjct: 60 DDVADTLSERLRAAVAQTLGRTILLYR 86
>gi|415885592|ref|ZP_11547520.1| hypothetical protein MGA3_10190 [Bacillus methanolicus MGA3]
gi|387591261|gb|EIJ83580.1| hypothetical protein MGA3_10190 [Bacillus methanolicus MGA3]
Length = 96
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK+GV + ++ + LEA EL+KI + + C +
Sbjct: 2 LTGKQKRFLRSEAHHLNPIFQ---VGKAGVNENMIKQVFDALEARELMKISVLQNCEDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V QL E TG+ +V IG T+I+Y+ S
Sbjct: 59 NTVAHQLAEGTGADIVQIIGNTIILYKES 87
>gi|302755494|ref|XP_002961171.1| hypothetical protein SELMODRAFT_402843 [Selaginella moellendorffii]
gi|300172110|gb|EFJ38710.1| hypothetical protein SELMODRAFT_402843 [Selaginella moellendorffii]
Length = 270
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 12 AVEEVKSPSRSPLP----LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFI 67
+ E+ + + P P P L+ KEKKEL +AH LGK + VGK GVT +
Sbjct: 135 SAEDTGTEKKKPGPWKSRFPPLSQKEKKELRGHAHRLGKSIALHHVGKWGVTPNSLKCLG 194
Query: 68 ETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQ 106
+ LE NEL+K+++ CP + V+ LE + VV Q
Sbjct: 195 DALEKNELMKVRVLDNCPTHISQVMLDLEHGLEAQVVGQ 233
>gi|212638657|ref|YP_002315177.1| RNA-binding protein containing KH domain, possibly ribosomal
protein [Anoxybacillus flavithermus WK1]
gi|433444335|ref|ZP_20409254.1| RNA-binding protein, YhbY family [Anoxybacillus flavithermus
TNO-09.006]
gi|212560137|gb|ACJ33192.1| Predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Anoxybacillus flavithermus WK1]
gi|432001627|gb|ELK22500.1| RNA-binding protein, YhbY family [Anoxybacillus flavithermus
TNO-09.006]
Length = 97
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV D ++ + LEA EL+K+ + + C E
Sbjct: 2 LTGKQKRFLRSLAHHLTPIFQ---VGKGGVNDNMIKQIADALEARELIKVSVLKNCEEEK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E V +QL E G+ VV IG T+++Y+ S
Sbjct: 59 EVVAEQLAEGAGAEVVQLIGHTIVLYKES 87
>gi|149183164|ref|ZP_01861613.1| YqeI [Bacillus sp. SG-1]
gi|148849147|gb|EDL63348.1| YqeI [Bacillus sp. SG-1]
Length = 97
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + ++ E LEA EL+KI I + C +
Sbjct: 2 LTGKQKRHLRSEAHHLNPIFQ---VGKGGVNENMIKQISEALEARELIKISILQNCEDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
+ V K+L G+ +V IG T+I+Y+ S K+E
Sbjct: 59 DTVAKELASGAGANIVQIIGHTIILYKESKENKKIE 94
>gi|228476052|ref|ZP_04060760.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|314936285|ref|ZP_07843632.1| probable RNA-binding protein YqeI [Staphylococcus hominis subsp.
hominis C80]
gi|418619902|ref|ZP_13182713.1| RNA-binding protein, YhbY family [Staphylococcus hominis VCU122]
gi|228269875|gb|EEK11355.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|313654904|gb|EFS18649.1| probable RNA-binding protein YqeI [Staphylococcus hominis subsp.
hominis C80]
gi|374823465|gb|EHR87460.1| RNA-binding protein, YhbY family [Staphylococcus hominis VCU122]
Length = 96
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK+G+ D +++ ETLE EL+KI I + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQ---IGKAGINDNMISQIDETLENRELIKIHILQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
D+ + L +AT S VV IG ++IYR S
Sbjct: 59 NDLAQTLSQATNSEVVQVIGSMIVIYRES 87
>gi|387929811|ref|ZP_10132488.1| hypothetical protein PB1_15384 [Bacillus methanolicus PB1]
gi|387586629|gb|EIJ78953.1| hypothetical protein PB1_15384 [Bacillus methanolicus PB1]
Length = 96
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + ++ LEA EL+KI + + C +
Sbjct: 2 LTGKQKRFLRSEAHHLNPIFQ---VGKGGVNENMIKQVSNALEARELMKISVLQNCEDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ V QL E TG+ +V IG T+I+Y+ S
Sbjct: 59 KTVANQLSEGTGADIVQIIGNTIILYKES 87
>gi|404417970|ref|ZP_10999752.1| hypothetical protein SARL_08824 [Staphylococcus arlettae CVD059]
gi|403489686|gb|EJY95249.1| hypothetical protein SARL_08824 [Staphylococcus arlettae CVD059]
Length = 96
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 9/100 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK+GV D +V E LE EL+K+ I + +
Sbjct: 2 LTGKQKRFLRSKAHNIDPTFQ---IGKAGVNDNMVAQIAELLEKRELIKVHILQNNFEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQ 128
D+ ++L +ATGS +V IG +++Y+ S EE KQ
Sbjct: 59 NDLAQELSDATGSQIVQVIGSMIVLYKES------EENKQ 92
>gi|205374262|ref|ZP_03227061.1| hypothetical protein Bcoam_14099 [Bacillus coahuilensis m4-4]
Length = 96
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH+L + VGK GV + + + LE EL+K++I + C +
Sbjct: 2 LTGKQKRYLRSEAHNLQPIFQ---VGKGGVNENMTNQIADALETRELMKVQILQNCDWDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++V K L E T + +V IG+ +I+Y+ S
Sbjct: 59 DEVAKALSEGTSAEIVQVIGKVIILYKES 87
>gi|399924152|ref|ZP_10781510.1| RNA binding protein [Peptoniphilus rhinitidis 1-13]
Length = 95
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT KE+ L S AH++ ++ +GK G+ DG + LE +E++KI + + P E+
Sbjct: 2 LTGKERAYLKSLAHNMDPLIQ---LGKDGINDGFLKQIDILLEDHEIVKINVLQNAPVEV 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
+++V ++ +ATG+ V +IG+ + IYR S K+E
Sbjct: 59 DEIVDEILDATGAEFVQKIGKKLTIYRESKENKKIE 94
>gi|223986365|ref|ZP_03636372.1| hypothetical protein HOLDEFILI_03683 [Holdemania filiformis DSM
12042]
gi|223961656|gb|EEF66161.1| hypothetical protein HOLDEFILI_03683 [Holdemania filiformis DSM
12042]
Length = 97
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K L S A++L + VGK GV+ ++ + + LEA+EL+K+ + ++CP ++
Sbjct: 2 LTNKQKSALRSMANTLRPIFQ---VGKEGVSYNLINTLSDALEAHELVKLNVLKSCPDDV 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
V L T + VV IG+T+++YR S ++E
Sbjct: 59 RQVALDLASGTHAEVVQIIGKTIVLYRESREHRRIE 94
>gi|313888400|ref|ZP_07822068.1| RNA-binding protein, YhbY family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845597|gb|EFR32990.1| RNA-binding protein, YhbY family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 95
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT KE+ L S AH++ ++ +GK G+ +G ++ + LE +E++KI + + P E+
Sbjct: 2 LTGKERSYLKSLAHNMDPLIQ---LGKDGINEGFLSQIDKLLEDHEIVKINVLQNAPVEV 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
+++V + +ATG+ V +IG+ + IYR S K+E
Sbjct: 59 DEIVDDILDATGAEFVQKIGKKLTIYRESKENKKIE 94
>gi|373496789|ref|ZP_09587334.1| YhbY family putative RNA-binding protein [Fusobacterium sp. 12_1B]
gi|404368384|ref|ZP_10973736.1| YhbY family putative RNA-binding protein [Fusobacterium ulcerans
ATCC 49185]
gi|313687684|gb|EFS24519.1| YhbY family putative RNA-binding protein [Fusobacterium ulcerans
ATCC 49185]
gi|371964768|gb|EHO82274.1| YhbY family putative RNA-binding protein [Fusobacterium sp. 12_1B]
Length = 102
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L AH L ++ +GK G+TD ++ S +E +++ ELLK+KI + C E
Sbjct: 3 LTSKQRAFLKKKAHELDPLVR---IGKDGITDSLIQSILEAIDSRELLKVKILQNCEKEK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+++L + + VV IG+T+I++R +
Sbjct: 60 NEVLEELSKCSEFEVVGIIGRTIILFREN 88
>gi|350566233|ref|ZP_08934922.1| RNA-binding protein YhbY [Peptoniphilus indolicus ATCC 29427]
gi|348662982|gb|EGY79606.1| RNA-binding protein YhbY [Peptoniphilus indolicus ATCC 29427]
Length = 95
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S A++L ++ VGK G+ DGV++ ++LE +EL+KI + + P E
Sbjct: 2 LTGKQRSYLKSIANTLNPLIQ---VGKGGIGDGVLSQIDKSLEDHELVKITVLKNSPVEA 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++V+++ +AT + V QIG + IYR S K+E
Sbjct: 59 REIVEEILDATNAEFVQQIGNKLTIYRESKENKKIE 94
>gi|229829085|ref|ZP_04455154.1| hypothetical protein GCWU000342_01170 [Shuttleworthia satelles DSM
14600]
gi|229792248|gb|EEP28362.1| hypothetical protein GCWU000342_01170 [Shuttleworthia satelles DSM
14600]
Length = 98
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L+S A+ L L+ +GKS VT +V S E LEA EL+KI + + C +
Sbjct: 4 LTNKQRAYLSSMANPLNAILQ---IGKSSVTPEIVNSVDEALEARELIKIHVLKNCFDDP 60
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ L E + S VV IG+ +I+YRP+
Sbjct: 61 MELANILAERSHSLVVRVIGKIIILYRPA 89
>gi|344198777|ref|YP_004783103.1| hypothetical protein Acife_0571 [Acidithiobacillus ferrivorans SS3]
gi|343774221|gb|AEM46777.1| protein of unknown function UPF0044 [Acidithiobacillus ferrivorans
SS3]
Length = 94
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K+++ L AH+L + ++G GVTDGV+ + A+EL+KI++ + E
Sbjct: 2 LDAKQRQNLRGQAHALKPVV---MIGAHGVTDGVLAELEGAIHAHELIKIRLPQVSHDER 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLT 119
+D+++ L A+ + VV +IG+ +I+YRP T
Sbjct: 59 DDMIQTLSGASHADVVGRIGRVLILYRPRPT 89
>gi|408356446|ref|YP_006844977.1| hypothetical protein AXY_10830 [Amphibacillus xylanus NBRC 15112]
gi|407727217|dbj|BAM47215.1| hypothetical protein AXY_10830 [Amphibacillus xylanus NBRC 15112]
Length = 96
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + ++T E LE EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRAKAHHLKPIFQ---VGKDGVNENMLTQVSEALEKRELIKVNVLQNCLEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
EDV +QL T + +V IG T+++YR S
Sbjct: 59 EDVAEQLVNGTNAELVQIIGATIVLYRES 87
>gi|350266769|ref|YP_004878076.1| hypothetical protein GYO_2835 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599656|gb|AEP87444.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 96
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV D ++ E LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRSKAHHLTPIFQ---VGKGGVNDNMIKQIAEALEARELIKVSVLQNCEDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV + L + + S +V IG T+++Y+ S
Sbjct: 59 NDVAEALVKGSRSQLVQTIGNTIVLYKES 87
>gi|304440694|ref|ZP_07400578.1| RNA-binding protein YhbY [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304370881|gb|EFM24503.1| RNA-binding protein YhbY [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 95
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K++ L S AH L ++ VGKSG+T+G+++ +LE++EL+KI + P E ++V
Sbjct: 5 KQRAYLKSLAHDLKPLIQ---VGKSGITEGLLSQIDASLESHELIKITFLQNSPVEGKEV 61
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
V ++ EATG+ V+ IG+ + +YR S K+E
Sbjct: 62 VDEIIEATGADFVNLIGKKLTLYRESKENKKIE 94
>gi|138896096|ref|YP_001126549.1| hypothetical protein GTNG_2459 [Geobacillus thermodenitrificans
NG80-2]
gi|196248989|ref|ZP_03147689.1| protein of unknown function UPF0044 [Geobacillus sp. G11MC16]
gi|134267609|gb|ABO67804.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
gi|196211865|gb|EDY06624.1| protein of unknown function UPF0044 [Geobacillus sp. G11MC16]
Length = 97
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GVT+ + LEA ELLK+ + + C +
Sbjct: 2 LTGKQKRFLRAQAHHLKPIFQ---VGKGGVTEAMTEQIAAALEARELLKVSVLQNCEEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ V +QL E TG+ +V IG T+++Y+ S
Sbjct: 59 DVVAEQLAEGTGAELVQVIGNTIVLYKES 87
>gi|386714889|ref|YP_006181212.1| RNA-binding protein YqeI [Halobacillus halophilus DSM 2266]
gi|384074445|emb|CCG45938.1| probable RNA-binding protein YqeI [Halobacillus halophilus DSM
2266]
Length = 96
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+KK L + +H + + VGK+GV + + T E LE EL+K+ I + C +
Sbjct: 2 LTSKQKKHLRAESHHVQPIFQ---VGKAGVNENMTTQMEEALEKRELIKVSILQNCFEDN 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++V Q+ ++TG+ +V IG T+I+Y+ S ++E
Sbjct: 59 KEVADQIAKSTGAQIVQVIGNTIILYKESKENKQIE 94
>gi|365157944|ref|ZP_09354188.1| YhbY family putative RNA-binding protein [Bacillus smithii
7_3_47FAA]
gi|363622354|gb|EHL73520.1| YhbY family putative RNA-binding protein [Bacillus smithii
7_3_47FAA]
Length = 97
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + +V + LEA ELLK+ + + C +
Sbjct: 2 LTGKQKRFLRSQAHHLNPIFQ---VGKGGVNENMVKQINDALEARELLKVSVLQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V +QL + T + +V IG T+I+Y+ S
Sbjct: 59 SEVAEQLVKGTNAELVQLIGNTIILYKES 87
>gi|154686825|ref|YP_001421986.1| hypothetical protein RBAM_023950 [Bacillus amyloliquefaciens FZB42]
gi|385265564|ref|ZP_10043651.1| CRS1 / YhbY (CRM) domain-containing protein [Bacillus sp. 5B6]
gi|394992035|ref|ZP_10384828.1| YqeI [Bacillus sp. 916]
gi|429505974|ref|YP_007187158.1| hypothetical protein B938_12370 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|154352676|gb|ABS74755.1| YqeI [Bacillus amyloliquefaciens FZB42]
gi|385150060|gb|EIF13997.1| CRS1 / YhbY (CRM) domain-containing protein [Bacillus sp. 5B6]
gi|393807051|gb|EJD68377.1| YqeI [Bacillus sp. 916]
gi|429487564|gb|AFZ91488.1| hypothetical protein B938_12370 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 96
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + +V E LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRSKAHHLTPIFQ---VGKGGVNENMVKQIAEALEARELIKVSVLQNCEDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV + L + T S +V IG T+++Y+ S
Sbjct: 59 NDVAEALVKGTRSQLVQTIGNTIVLYKES 87
>gi|402574417|ref|YP_006623760.1| RNA-binding protein [Desulfosporosinus meridiei DSM 13257]
gi|402255614|gb|AFQ45889.1| putative RNA-binding protein, YhbY family [Desulfosporosinus
meridiei DSM 13257]
Length = 97
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 40 YAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEA 98
+ ++G ++ L VGKSG+T+ VVT ET+EA EL+K ++ + C E + V L E
Sbjct: 9 FLRAMGNEMVPILQVGKSGITESVVTQTNETIEARELIKGRVLQNCLEEPKAVAAVLAEQ 68
Query: 99 TGSAVVSQIGQTVIIYRPS 117
TGS +V IG+ ++YRPS
Sbjct: 69 TGSELVQVIGRNFLLYRPS 87
>gi|293400787|ref|ZP_06644932.1| probable RNA-binding protein YqeI [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|373451899|ref|ZP_09543817.1| YhbY family putative RNA-binding protein [Eubacterium sp. 3_1_31]
gi|291305813|gb|EFE47057.1| probable RNA-binding protein YqeI [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|371967331|gb|EHO84802.1| YhbY family putative RNA-binding protein [Eubacterium sp. 3_1_31]
Length = 94
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+KK L S A + +K Q +GK GVT ++ + ++LEA+EL+K+ + +TCP +
Sbjct: 2 LTSKDKKTLRSIAQT--RKALFQ-IGKDGVTLNMIKTISDSLEAHELVKVSLLKTCPLSV 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + T S VV IG+TVI YR S
Sbjct: 59 QEAALDIAGGTRSEVVQTIGRTVIFYRRS 87
>gi|319937330|ref|ZP_08011737.1| cation antiporter [Coprobacillus sp. 29_1]
gi|319807696|gb|EFW04289.1| cation antiporter [Coprobacillus sp. 29_1]
Length = 95
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L AH L + VGK GV E LE+ ELLK+KI +CP ++
Sbjct: 2 LTGKQKRYLRGKAHHLNAIFQ---VGKEGVNSNQAKGISEALESQELLKVKILESCPDDV 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V +L T S VV IG T+I+Y+ S
Sbjct: 59 NTVALELSVQTKSEVVQIIGHTIILYKSS 87
>gi|16079619|ref|NP_390443.1| RNA-binding protein [Bacillus subtilis subsp. subtilis str. 168]
gi|221310490|ref|ZP_03592337.1| hypothetical protein Bsubs1_14026 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314814|ref|ZP_03596619.1| hypothetical protein BsubsN3_13937 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319736|ref|ZP_03601030.1| hypothetical protein BsubsJ_13863 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324014|ref|ZP_03605308.1| hypothetical protein BsubsS_13992 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|296333276|ref|ZP_06875729.1| putative RNA-binding protein [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305675220|ref|YP_003866892.1| RNA-binding protein [Bacillus subtilis subsp. spizizenii str. W23]
gi|321312050|ref|YP_004204337.1| putative RNA-binding protein [Bacillus subtilis BSn5]
gi|398307024|ref|ZP_10510610.1| putative RNA-binding protein [Bacillus vallismortis DV1-F-3]
gi|418032256|ref|ZP_12670739.1| putative RNA-binding protein [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|428280058|ref|YP_005561793.1| hypothetical protein BSNT_03817 [Bacillus subtilis subsp. natto
BEST195]
gi|430756356|ref|YP_007208895.1| hypothetical protein A7A1_0864 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|443631864|ref|ZP_21116044.1| putative RNA-binding protein [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|449095060|ref|YP_007427551.1| putative RNA-binding protein [Bacillus subtilis XF-1]
gi|452915740|ref|ZP_21964366.1| CRS1 / YhbY domain protein [Bacillus subtilis MB73/2]
gi|1730982|sp|P54454.1|YQEI_BACSU RecName: Full=Probable RNA-binding protein YqeI
gi|1303790|dbj|BAA12446.1| YqeI [Bacillus subtilis]
gi|2635011|emb|CAB14507.1| putative RNA-binding protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|291485015|dbj|BAI86090.1| hypothetical protein BSNT_03817 [Bacillus subtilis subsp. natto
BEST195]
gi|296149474|gb|EFG90370.1| putative RNA-binding protein [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305413464|gb|ADM38583.1| putative RNA-binding protein [Bacillus subtilis subsp. spizizenii
str. W23]
gi|320018324|gb|ADV93310.1| putative RNA-binding protein [Bacillus subtilis BSn5]
gi|351471119|gb|EHA31240.1| putative RNA-binding protein [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|407959813|dbj|BAM53053.1| RNA-binding protein [Bacillus subtilis BEST7613]
gi|407965388|dbj|BAM58627.1| RNA-binding protein [Bacillus subtilis BEST7003]
gi|430020876|gb|AGA21482.1| Hypothetical protein YqeI [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|443347979|gb|ELS62036.1| putative RNA-binding protein [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|449028975|gb|AGE64214.1| putative RNA-binding protein [Bacillus subtilis XF-1]
gi|452116088|gb|EME06484.1| CRS1 / YhbY domain protein [Bacillus subtilis MB73/2]
Length = 96
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV D ++ E LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRSKAHHLTPIFQ---VGKGGVNDNMIKQIAEALEARELIKVSVLQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV + L + + S +V IG T+++Y+ S
Sbjct: 59 NDVAEALVKGSRSQLVQTIGNTIVLYKES 87
>gi|386759164|ref|YP_006232380.1| RNA-binding protein [Bacillus sp. JS]
gi|384932446|gb|AFI29124.1| RNA-binding protein [Bacillus sp. JS]
Length = 96
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV D ++ E LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRSKAHHLTPIFQ---VGKGGVNDNMIKQIAEALEARELIKVSVLQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV L + + S +V IG T+++Y+ S
Sbjct: 59 NDVADALVKGSRSQLVQTIGNTIVLYKES 87
>gi|433462860|ref|ZP_20420431.1| RNA-binding protein YqeI [Halobacillus sp. BAB-2008]
gi|432188316|gb|ELK45520.1| RNA-binding protein YqeI [Halobacillus sp. BAB-2008]
Length = 96
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 9/100 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+KK L + +H + + VGK+GV + + E LE EL+K+ I + C +
Sbjct: 2 LTSKQKKHLRTISHPIQPIFQ---VGKAGVNENMTVQISEALEKRELIKVSILQNCFEDN 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQ 128
V ++ EATG+ +V IG T+I+Y+ S EE KQ
Sbjct: 59 RQVADEIVEATGAELVQMIGNTIILYKES------EENKQ 92
>gi|334137644|ref|ZP_08511073.1| RNA-binding protein, YhbY family [Paenibacillus sp. HGF7]
gi|333604808|gb|EGL16193.1| RNA-binding protein, YhbY family [Paenibacillus sp. HGF7]
Length = 104
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + ++ +E +E EL+KI + +
Sbjct: 8 LTGKQKRHLRSLAHHLTPVFQ---VGKGGVNEHLIQHIVEAIEVRELMKISVLNNYEADC 64
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++V ++L E G+ +V IG+T+++Y+ S ++E
Sbjct: 65 KEVARELAEGAGAELVQVIGRTIVLYKESRDNKQIE 100
>gi|261418459|ref|YP_003252141.1| hypothetical protein GYMC61_0994 [Geobacillus sp. Y412MC61]
gi|319767580|ref|YP_004133081.1| hypothetical protein [Geobacillus sp. Y412MC52]
gi|448238801|ref|YP_007402859.1| putative RNA-binding protein [Geobacillus sp. GHH01]
gi|261374916|gb|ACX77659.1| protein of unknown function UPF0044 [Geobacillus sp. Y412MC61]
gi|317112446|gb|ADU94938.1| protein of unknown function UPF0044 [Geobacillus sp. Y412MC52]
gi|445207643|gb|AGE23108.1| putative RNA-binding protein [Geobacillus sp. GHH01]
Length = 97
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GVT+ + LEA ELLK+ + + C +
Sbjct: 2 LTGKQKRFLRAQAHHLKPIFQ---VGKGGVTEAMTEQIAAALEARELLKVSVLQNCEEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V +QL TG+ VV IG T+++Y+ S
Sbjct: 59 HAVAEQLAAGTGAEVVQVIGNTIVLYKES 87
>gi|218281648|ref|ZP_03488049.1| hypothetical protein EUBIFOR_00616 [Eubacterium biforme DSM 3989]
gi|218217255|gb|EEC90793.1| hypothetical protein EUBIFOR_00616 [Eubacterium biforme DSM 3989]
Length = 96
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT + KK Y LG K +GK G++D ++ + ++LEA+EL+K + +TCP +
Sbjct: 2 LTSQNKK----YLRKLGMDYKSLFQIGKDGLSDNLMDTLSDSLEAHELVKCNLLKTCPVD 57
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + + ATGS VV +G T ++YR S
Sbjct: 58 VREAAIECASATGSEVVHIVGHTFLLYRRS 87
>gi|323490037|ref|ZP_08095258.1| YqeI [Planococcus donghaensis MPA1U2]
gi|323396333|gb|EGA89158.1| YqeI [Planococcus donghaensis MPA1U2]
Length = 99
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K L S AH L + VGK GV D ++ E LE EL+KI I +
Sbjct: 2 LTTKQKSFLKSEAHHLAPIFQ---VGKGGVNDAMLVQIKEALEKRELVKISILQNNEDGK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
E+V K L + T S +V IG TV++Y+ S+ ++E
Sbjct: 59 EEVAKALAKGTKSQLVQLIGHTVVLYKQSVNNKRIE 94
>gi|315918513|ref|ZP_07914753.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
gi|317059676|ref|ZP_07924161.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313685352|gb|EFS22187.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313692388|gb|EFS29223.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 101
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KLT K++ L AH L ++ +GK G+ + V+ S + +++ EL+K+KI + C E
Sbjct: 2 KLTSKQRAFLKKKAHELNPIVR---IGKDGLQETVIESILSAIDSRELIKVKILQNCETE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E++ +QL E T VV IG+T+I+++ +
Sbjct: 59 KEEIYQQLLEETRFDVVGMIGRTIIVFKEN 88
>gi|239827795|ref|YP_002950419.1| hypothetical protein GWCH70_2457 [Geobacillus sp. WCH70]
gi|239808088|gb|ACS25153.1| protein of unknown function UPF0044 [Geobacillus sp. WCH70]
Length = 97
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + ++ I+ LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRAKAHHLKPIFQ---VGKGGVNENMIKQIIDALEARELIKVSVLQNCEEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V +QL + G+ +V IG T+++Y+ S
Sbjct: 59 HVVAEQLAQGAGAELVQVIGNTIVLYKES 87
>gi|384176189|ref|YP_005557574.1| hypothetical protein I33_2652 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349595413|gb|AEP91600.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 96
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV D ++ E LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRSKAHHLTPIFQ---VGKGGVNDNMIKQIAEALEARELIKVSVLQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV + L + + S +V IG T+++Y+ S
Sbjct: 59 TDVAEALVKGSRSQLVQTIGNTIVLYKES 87
>gi|329767814|ref|ZP_08259330.1| RNA-binding protein yqeI [Gemella haemolysans M341]
gi|328838915|gb|EGF88509.1| RNA-binding protein yqeI [Gemella haemolysans M341]
Length = 99
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K++L + AH L + VGKSGV ++ + LE ELLK+ I + C + ++V
Sbjct: 5 KQKRQLRALAHHLSPIFQ---VGKSGVNSDMIQGIRDALEKRELLKVSILQNCEEDKDEV 61
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
K L E T S +V IG T+++Y+ S
Sbjct: 62 AKILSERTSSELVQVIGHTIVLYKQS 87
>gi|340749983|ref|ZP_08686830.1| hypothetical protein FMAG_00235 [Fusobacterium mortiferum ATCC
9817]
gi|229419626|gb|EEO34673.1| hypothetical protein FMAG_00235 [Fusobacterium mortiferum ATCC
9817]
Length = 101
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+LT K + L AH L ++ +GK GVTD ++ S ++ +E+ EL+K+KI + C E
Sbjct: 2 ELTSKRRAYLRKKAHDLDALVR---IGKEGVTDNLIQSILDAIESRELIKVKILQNCEEE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++++QL + VV IG+T+I+++ +
Sbjct: 59 KMEIMEQLSQCKEFEVVGIIGRTIILFKEN 88
>gi|308174354|ref|YP_003921059.1| RNA-binding protein [Bacillus amyloliquefaciens DSM 7]
gi|375363098|ref|YP_005131137.1| CRS2-associated factor 1 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384266177|ref|YP_005421884.1| putative RNA binding protein [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387899198|ref|YP_006329494.1| putative RNA-binding protein containing KH domain [Bacillus
amyloliquefaciens Y2]
gi|421730916|ref|ZP_16170042.1| putative RNA-binding protein containing KH domain [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|451346229|ref|YP_007444860.1| putative RNA-binding protein containing KH domain [Bacillus
amyloliquefaciens IT-45]
gi|452856328|ref|YP_007498011.1| putative RNA-binding protein [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|307607218|emb|CBI43589.1| putative RNA-binding protein [Bacillus amyloliquefaciens DSM 7]
gi|371569092|emb|CCF05942.1| CRS2-associated factor 1 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380499530|emb|CCG50568.1| putative RNA binding protein [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387173308|gb|AFJ62769.1| putative RNA-binding protein containing KH domain [Bacillus
amyloliquefaciens Y2]
gi|407075070|gb|EKE48057.1| putative RNA-binding protein containing KH domain [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|449849987|gb|AGF26979.1| putative RNA-binding protein containing KH domain [Bacillus
amyloliquefaciens IT-45]
gi|452080588|emb|CCP22351.1| putative RNA-binding protein [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 96
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + +V E LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRSKAHHLTPIFQ---VGKGGVNENMVKQIAEALEARELIKVSVLQNCEDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV + L + + S +V IG T+++Y+ S
Sbjct: 59 NDVAEALVKGSRSQLVQTIGNTIVLYKES 87
>gi|95929549|ref|ZP_01312291.1| protein of unknown function UPF0044 [Desulfuromonas acetoxidans DSM
684]
gi|95134246|gb|EAT15903.1| protein of unknown function UPF0044 [Desulfuromonas acetoxidans DSM
684]
Length = 101
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ K+ + L H L + L+GK V+ GV+ S E L+ +EL+K+K+
Sbjct: 1 MPTVTLSGKQNRFLRGLGHHLNPVV---LIGKDAVSQGVIDSVEEVLDQHELIKVKLLEG 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
C + ++V +QL T S+VV +G+T++++RP+
Sbjct: 58 CLVDRKNVAEQLSTTTDSSVVQILGRTILLFRPT 91
>gi|297584670|ref|YP_003700450.1| hypothetical protein [Bacillus selenitireducens MLS10]
gi|297143127|gb|ADH99884.1| protein of unknown function UPF0044 [Bacillus selenitireducens
MLS10]
Length = 97
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AHSL + VGK+GV ++ E LEA EL+K+ I + C +
Sbjct: 2 LSGKQKRYLRGEAHSLKAIFQ---VGKAGVNANLIKQVGEALEARELIKVSILQNCSEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV ++L E + V IG T+I+Y+ S
Sbjct: 59 HDVARELSEGADAETVQIIGNTIILYKES 87
>gi|398311508|ref|ZP_10514982.1| hypothetical protein BmojR_19437 [Bacillus mojavensis RO-H-1]
Length = 96
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV D ++ E +EA EL+KI + + C +
Sbjct: 2 LTGKQKRFLRSKAHHLSPIFQ---VGKGGVNDNMIKQISEAVEARELIKISVLQNCEDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
DV + L + + + +V IG T+++Y+ S ++E
Sbjct: 59 NDVAETLVKGSRAQLVQTIGSTIVLYKESKENKQIE 94
>gi|299144204|ref|ZP_07037284.1| probable RNA-binding protein YqeI [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518689|gb|EFI42428.1| probable RNA-binding protein YqeI [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 95
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
SY SL L L VGK+GVT+ ++ E LE +EL+KI + + P ++V+++ E
Sbjct: 8 SYLKSLANTLNPLLQVGKNGVTENLIKQIDELLEYHELVKITVLKNSPVYAREIVEEILE 67
Query: 98 ATGSAVVSQIGQTVIIYRPSLTRMKLE 124
TG+ V QIG + IYR S K+E
Sbjct: 68 QTGAEFVQQIGNKLTIYRESKENKKIE 94
>gi|335040464|ref|ZP_08533592.1| RNA-binding, CRM domain containing protein [Caldalkalibacillus
thermarum TA2.A1]
gi|334179653|gb|EGL82290.1| RNA-binding, CRM domain containing protein [Caldalkalibacillus
thermarum TA2.A1]
Length = 96
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 9/100 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV D ++ + L+A EL+K+ + + C +
Sbjct: 2 LTGKQKRYLRSLAHHLNPIFQ---VGKGGVNDNMLQQIKDALKARELIKVSVLQNCEQDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQ 128
+V ++L + TG+ +V IG+ +++Y+ S EE KQ
Sbjct: 59 HEVAEELAKGTGAELVQVIGKQIVLYKES------EENKQ 92
>gi|381182526|ref|ZP_09891328.1| CRS1 / YhbY domain family protein [Listeriaceae bacterium TTU
M1-001]
gi|380317576|gb|EIA20893.1| CRS1 / YhbY domain family protein [Listeriaceae bacterium TTU
M1-001]
Length = 96
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT +K+ L AHSL + VGK GVT +V E LEA EL+K+ I + C
Sbjct: 2 LTNPQKRFLRKNAHSLHPIFQ---VGKGGVTPNMVIQIAEALEARELIKVSILQNCEVPK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E+V + L +G+ +V IG+T+I+Y+ S
Sbjct: 59 EEVAETLSSRSGAELVQVIGRTIILYKES 87
>gi|381210421|ref|ZP_09917492.1| putative RNA-binding protein [Lentibacillus sp. Grbi]
Length = 96
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK+GV D + E LE ELLK+ I + P +
Sbjct: 2 LTGKQKRYLRSEAHHLKPIFQ---VGKTGVNDNMTGQIGEALEKRELLKVSILQNSPEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++L E TG+ +V IG+ +I+Y+ S
Sbjct: 59 NTAAEKLAEGTGAEIVQIIGKNIILYKES 87
>gi|315641159|ref|ZP_07896237.1| RNA-binding protein YhbY [Enterococcus italicus DSM 15952]
gi|315483083|gb|EFU73601.1| RNA-binding protein YhbY [Enterococcus italicus DSM 15952]
Length = 103
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ L S AH L + +GK GV D ++ E LE EL+K+ + + E
Sbjct: 2 NLTGKQKRFLRSKAHHLNPIFQ---IGKGGVNDAMLVQIGEALEKRELIKVSLLQNTDEE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV LEE G ++ IG+ +++Y+PS
Sbjct: 59 ASDVAAVLEEKVGCSIAQIIGRILVVYKPS 88
>gi|319651633|ref|ZP_08005760.1| hypothetical protein HMPREF1013_02372 [Bacillus sp. 2_A_57_CT2]
gi|317396700|gb|EFV77411.1| hypothetical protein HMPREF1013_02372 [Bacillus sp. 2_A_57_CT2]
Length = 96
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + ++ E LEA ELLK+ + + C +
Sbjct: 2 LTGKQKRFLRSKAHHLNPIFQ---VGKGGVNENMIKQVGEALEARELLKVSVLQNCEEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ V +QL + T + VV IG +++Y+ S
Sbjct: 59 DTVAQQLSKGTKADVVQIIGNIIVLYKES 87
>gi|317495822|ref|ZP_07954185.1| CRS1/YhbY domain-containing protein [Gemella morbillorum M424]
gi|316913999|gb|EFV35482.1| CRS1/YhbY domain-containing protein [Gemella morbillorum M424]
Length = 99
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K++L + AH L + VGKSGV +V + LE ELLK+ I + C + ++V
Sbjct: 5 KQKRQLRALAHHLTPIFQ---VGKSGVNSEMVQGIRDALEKRELLKVSILQNCEEDKDEV 61
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
K L E T S +V IG T+++Y+ S
Sbjct: 62 AKVLSERTSSELVQVIGHTIVLYKQS 87
>gi|311069168|ref|YP_003974091.1| RNA-binding protein [Bacillus atrophaeus 1942]
gi|419820182|ref|ZP_14343795.1| putative RNA-binding protein [Bacillus atrophaeus C89]
gi|310869685|gb|ADP33160.1| putative RNA-binding protein [Bacillus atrophaeus 1942]
gi|388475694|gb|EIM12404.1| putative RNA-binding protein [Bacillus atrophaeus C89]
Length = 96
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV D ++ E LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRVLRSKAHHLTPIFQ---VGKGGVNDNMIKQISEALEARELIKVSVLQNCEQDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++V K L + + + +V IG T+++Y+ S
Sbjct: 59 DEVAKALVKGSRAHLVQTIGNTIVLYKES 87
>gi|375009613|ref|YP_004983246.1| hypothetical protein [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359288462|gb|AEV20146.1| hypothetical protein GTCCBUS3UF5_28430 [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 97
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GVT+ + LEA ELLK+ + + C +
Sbjct: 2 LTGKQKRFLRAQAHHLKPIFQ---VGKGGVTEAMTEQIAAALEARELLKVSVLQNCEEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V +QL TG+ VV IG T+++Y+ S
Sbjct: 59 CTVAEQLAAGTGAEVVQVIGNTIVLYKES 87
>gi|294501321|ref|YP_003565021.1| putative RNA-binding protein [Bacillus megaterium QM B1551]
gi|295706668|ref|YP_003599743.1| RNA-binding protein [Bacillus megaterium DSM 319]
gi|294351258|gb|ADE71587.1| putative RNA-binding protein [Bacillus megaterium QM B1551]
gi|294804327|gb|ADF41393.1| putative RNA-binding protein [Bacillus megaterium DSM 319]
Length = 99
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + ++ + LEA ELLK+ I + C +
Sbjct: 2 LTGKQKRFLRSKAHHLNPIFQ---VGKGGVNENMIGQIADALEARELLKVSILQNCDEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ V +L + T + +V IG T+++Y+ S
Sbjct: 59 DTVAARLTKGTKAELVQVIGNTIVLYKES 87
>gi|357010655|ref|ZP_09075654.1| YqeI [Paenibacillus elgii B69]
Length = 97
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH + + VGK GV D ++ E LE EL+K+ + C +
Sbjct: 2 LTGKQKRYLRSLAHHMNPIFQ---VGKGGVNDHLIRHISEALEVRELIKVTVLNNCMEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V +QL + G+ +V IG+ +++Y+ S
Sbjct: 59 NEVAEQLAQGAGAELVQVIGKIIVLYKES 87
>gi|389815853|ref|ZP_10207101.1| hypothetical protein A1A1_03532 [Planococcus antarcticus DSM 14505]
gi|388465576|gb|EIM07892.1| hypothetical protein A1A1_03532 [Planococcus antarcticus DSM 14505]
Length = 99
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K L S AH L + VGK GV+D ++ E LE EL+KI I +
Sbjct: 2 LTTKQKSFLRSEAHHLDPIFQ---VGKGGVSDAMLVQIKEALEKRELVKISILQNNEDGK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++V K L + T S +V IG TVI+Y+ S+ ++E
Sbjct: 59 DEVAKALAKGTKSQLVQLIGHTVILYKQSVHNKRIE 94
>gi|407476614|ref|YP_006790491.1| RNA-binding protein [Exiguobacterium antarcticum B7]
gi|407060693|gb|AFS69883.1| RNA-binding protein [Exiguobacterium antarcticum B7]
Length = 97
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK+GV + + ++ LE ELLK+++ + C
Sbjct: 2 LTGKQKRYLRATAHDLSPIFQ---VGKNGVGEAMCADLMDALEKRELLKVQVLQNCADAP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+DV +L + T + +V IG+ +++Y+ S
Sbjct: 59 KDVAAELVDGTNADLVQVIGKVIVLYKES 87
>gi|297529311|ref|YP_003670586.1| hypothetical protein GC56T3_0967 [Geobacillus sp. C56-T3]
gi|297252563|gb|ADI26009.1| protein of unknown function UPF0044 [Geobacillus sp. C56-T3]
Length = 97
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GVT+ + LEA ELLK+ + + C +
Sbjct: 2 LTGKQKRFLRAQAHHLKPIFQ---VGKGGVTEAMTEQIAAALEARELLKVSVLQNCEEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V +QL TG+ +V IG T+++Y+ S
Sbjct: 59 YTVAEQLAAGTGAELVQVIGNTIVLYKES 87
>gi|241888870|ref|ZP_04776176.1| RNA-binding protein [Gemella haemolysans ATCC 10379]
gi|241864546|gb|EER68922.1| RNA-binding protein [Gemella haemolysans ATCC 10379]
Length = 99
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K++L + AH L + VGKSGV ++ + LE ELLK+ I + C + ++V
Sbjct: 5 KQKRQLRALAHHLSPIFQ---VGKSGVNSDMIQGIRDALEKRELLKVSILQNCEEDKDEV 61
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ L E T S +V IG T+++Y+ S
Sbjct: 62 AQILSERTSSELVQVIGHTIVLYKQS 87
>gi|167756986|ref|ZP_02429113.1| hypothetical protein CLORAM_02535 [Clostridium ramosum DSM 1402]
gi|237732928|ref|ZP_04563409.1| cation antiporter [Mollicutes bacterium D7]
gi|365833457|ref|ZP_09374973.1| hypothetical protein HMPREF1021_03737 [Coprobacillus sp. 3_3_56FAA]
gi|374625565|ref|ZP_09697981.1| YhbY family putative RNA-binding protein [Coprobacillus sp.
8_2_54BFAA]
gi|167703161|gb|EDS17740.1| RNA-binding protein, YhbY family [Clostridium ramosum DSM 1402]
gi|229383997|gb|EEO34088.1| cation antiporter [Coprobacillus sp. D7]
gi|365257901|gb|EHM87924.1| hypothetical protein HMPREF1021_03737 [Coprobacillus sp. 3_3_56FAA]
gi|373915225|gb|EHQ46996.1| YhbY family putative RNA-binding protein [Coprobacillus sp.
8_2_54BFAA]
Length = 95
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L AH+L + +GK GV + + LEA+EL+K+KI +C
Sbjct: 2 LTGKQKRYLRGIAHNLNAIFQ---IGKEGVHQTQIEGIDDALEAHELIKVKILESCADSK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ +L T + VV +G+T+I+YRPS
Sbjct: 59 NEIALELSMKTKADVVQILGRTIILYRPS 87
>gi|152976763|ref|YP_001376280.1| hypothetical protein Bcer98_3059 [Bacillus cytotoxicus NVH 391-98]
gi|152025515|gb|ABS23285.1| protein of unknown function UPF0044 [Bacillus cytotoxicus NVH
391-98]
Length = 96
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + ++ + LEA EL K+ + + C +
Sbjct: 2 LTGKQKRFLRAKAHHLTPIFQ---VGKGGVNENMIKQIADALEARELFKVSVLQNCEFDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + G+ +V IG T+++Y+ S
Sbjct: 59 REVAEELAQGAGAEIVQVIGSTIVLYKES 87
>gi|172056804|ref|YP_001813264.1| hypothetical protein Exig_0766 [Exiguobacterium sibiricum 255-15]
gi|171989325|gb|ACB60247.1| protein of unknown function UPF0044 [Exiguobacterium sibiricum
255-15]
Length = 97
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK+GV + + ++ LE ELLK+++ + C
Sbjct: 2 LTGKQKRYLRATAHDLSPIFQ---VGKNGVGEAMCADLMDALEKRELLKVQVLQNCADAP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+DV +L + T + +V IG+ +++Y+ S
Sbjct: 59 KDVAAELVDGTNAELVQVIGKVIVLYKES 87
>gi|89100812|ref|ZP_01173664.1| hypothetical protein B14911_06698 [Bacillus sp. NRRL B-14911]
gi|89084458|gb|EAR63607.1| hypothetical protein B14911_06698 [Bacillus sp. NRRL B-14911]
Length = 96
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + +++ E LEA ELLK+ I + C +
Sbjct: 2 LTGKQKRLLRSKAHHLNPIFQ---VGKGGVNENMISQIGEALEARELLKVSILQNCDEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++V ++L + T + +V IG +++Y+ S
Sbjct: 59 DEVAEKLVKGTKAELVQIIGNMIVLYKES 87
>gi|340755126|ref|ZP_08691828.1| hypothetical protein FSEG_00579 [Fusobacterium sp. D12]
gi|419841855|ref|ZP_14365217.1| RNA-binding protein, YhbY family [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421499505|ref|ZP_15946547.1| RNA-binding protein, YhbY family [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|313686137|gb|EFS22972.1| hypothetical protein FSEG_00579 [Fusobacterium sp. D12]
gi|386903892|gb|EIJ68693.1| RNA-binding protein, YhbY family [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402269655|gb|EJU18981.1| RNA-binding protein, YhbY family [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 101
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KLT K++ L AH L ++ +GK G+ + V+ S + +++ EL+K+KI + C +
Sbjct: 2 KLTSKQRAFLKKKAHELNPIVR---IGKDGLQETVIDSILSAIDSRELIKVKILQNCETK 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E++ +QL + T VV IG+T+II++ +
Sbjct: 59 KEEIYEQLLQETRFHVVDMIGRTIIIFKEN 88
>gi|456011616|gb|EMF45353.1| RNA binding protein [Planococcus halocryophilus Or1]
Length = 99
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K L S AH L + VGK GV D ++ E LE EL+KI I +
Sbjct: 2 LTTKQKSFLKSEAHHLAPIFQ---VGKGGVNDAMLVQIKEALEKRELVKISILQNNEDGK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++V K L + T S +V IG TV++Y+ S+ ++E
Sbjct: 59 DEVAKALAKGTKSQLVQLIGHTVVLYKQSVHNKRIE 94
>gi|56421058|ref|YP_148376.1| hypothetical protein GK2523 [Geobacillus kaustophilus HTA426]
gi|56380900|dbj|BAD76808.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 97
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GVT+ + LEA ELLK+ + + C +
Sbjct: 2 LTGKQKRFLRAQAHHLKPIFQ---VGKGGVTEAMTEQIAAALEARELLKVSVLQNCEEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V +QL TG+ VV IG T+++Y+ S
Sbjct: 59 CIVAEQLAAGTGAEVVQVIGNTIVLYKES 87
>gi|320353005|ref|YP_004194344.1| hypothetical protein Despr_0879 [Desulfobulbus propionicus DSM
2032]
gi|320121507|gb|ADW17053.1| protein of unknown function UPF0044 [Desulfobulbus propionicus DSM
2032]
Length = 109
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT +KK L S H L + VGK G + ++ S L+A+EL+KIK+ + CP E
Sbjct: 13 LTSGQKKSLRSLGHHLEPVVH---VGKEGFSPALLKSMDAALKAHELIKIKLGQNCPVER 69
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+L +G+A+V IG+ ++++RP+
Sbjct: 70 NAAGPELARMSGAALVQVIGRMILLFRPN 98
>gi|403237573|ref|ZP_10916159.1| putative RNA-binding protein [Bacillus sp. 10403023]
Length = 99
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + ++ + LEA ELLK+ I + C +
Sbjct: 2 LTGKQKRFLRSKAHHLDPIFQ---VGKGGVNENMIKQISDALEARELLKVSILQNCEDDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
+ V ++L + + +V IG T+++Y+ S +LE
Sbjct: 59 DTVAEELTKGAKAELVQIIGNTIVLYKESKENKQLE 94
>gi|224543254|ref|ZP_03683793.1| hypothetical protein CATMIT_02454 [Catenibacterium mitsuokai DSM
15897]
gi|224523787|gb|EEF92892.1| RNA-binding protein, YhbY family [Catenibacterium mitsuokai DSM
15897]
Length = 94
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K+KK L S AHSL + VGK GV + + S + L+A EL+K+K+ TCP +
Sbjct: 2 LNSKQKKFLRSEAHSLKPIFQ---VGKDGVGEKQINSINDALKAKELIKVKLLDTCPETV 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++ T + VV IG T+I ++ S
Sbjct: 59 NEVALEISMGTKADVVHIIGHTIIFFKSS 87
>gi|402300003|ref|ZP_10819556.1| hypothetical protein BalcAV_13098 [Bacillus alcalophilus ATCC
27647]
gi|401724794|gb|EJS98123.1| hypothetical protein BalcAV_13098 [Bacillus alcalophilus ATCC
27647]
Length = 96
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + +V E LE EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRSKAHHLNPIFQ---VGKGGVNENMVQQISEALEVRELIKVSVLQNCEYDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
++V + T + +V IG T+++YR S+ + +L
Sbjct: 59 QEVADDIATGTKADIVQIIGNTIVLYRESVEQKQL 93
>gi|384160213|ref|YP_005542286.1| RNA-binding protein [Bacillus amyloliquefaciens TA208]
gi|384165142|ref|YP_005546521.1| RNA-binding protein [Bacillus amyloliquefaciens LL3]
gi|384169283|ref|YP_005550661.1| RNA-binding protein [Bacillus amyloliquefaciens XH7]
gi|328554301|gb|AEB24793.1| RNA-binding protein [Bacillus amyloliquefaciens TA208]
gi|328912697|gb|AEB64293.1| putative RNA-binding protein [Bacillus amyloliquefaciens LL3]
gi|341828562|gb|AEK89813.1| putative RNA-binding protein [Bacillus amyloliquefaciens XH7]
Length = 96
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + +V E LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRSKAHHLTPIFQ---VGKGGVNENMVKQIAEALEARELIKVSVLQNCEDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV L + + + +V IG T+++Y+ S
Sbjct: 59 NDVAAALVKGSRAHLVQTIGNTIVLYKES 87
>gi|335031088|ref|ZP_08524546.1| RNA-binding protein, YhbY family [Streptococcus anginosus SK52 =
DSM 20563]
gi|333770556|gb|EGL47584.1| RNA-binding protein, YhbY family [Streptococcus anginosus SK52 =
DSM 20563]
Length = 103
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+T+I+Y+ S
Sbjct: 60 HEVAEILEEEIGVNTVQKIGRTLILYKQS 88
>gi|403070190|ref|ZP_10911522.1| putative RNA-binding protein [Oceanobacillus sp. Ndiop]
Length = 96
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K L S AH L + VGK+GV + ++ E LE ELLK+ + + C +
Sbjct: 2 LTGKQKGFLRSEAHHLKPIFQ---VGKTGVNENMIEQIGEALEKRELLKVSVLQNCMEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ V +QL E T S +V IG +++Y+ S
Sbjct: 59 DTVAEQLSEGTHSDIVQVIGNNIVLYKES 87
>gi|354582186|ref|ZP_09001088.1| protein of unknown function UPF0044 [Paenibacillus lactis 154]
gi|353199585|gb|EHB65047.1| protein of unknown function UPF0044 [Paenibacillus lactis 154]
Length = 96
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK G + ++ E +E ELLKI + C +
Sbjct: 2 LTGKQKRHLRSLAHHLDPLFQ---VGKGGSNEHLIRHIEEAIEKRELLKISVLNNCLEDP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
D+ ++L E G+ +V IG+T+++Y+ S
Sbjct: 59 RDIAEELAEGAGAELVQVIGKTIVLYKES 87
>gi|332288658|ref|YP_004419510.1| RNA-binding protein YhbY [Gallibacterium anatis UMN179]
gi|330431554|gb|AEC16613.1| RNA-binding protein YhbY [Gallibacterium anatis UMN179]
Length = 100
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L + ++G +G+T+GV+ L +EL+K+KI E
Sbjct: 5 LSTKQKQYLKGLAHHLNPVV---MLGGNGLTEGVIAEIDNALNHHELIKVKISGVDREEK 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E VV +E TG+ V +IG +++YRPS
Sbjct: 62 ELVVAAIERETGACAVQRIGHILVLYRPS 90
>gi|288555656|ref|YP_003427591.1| hypothetical protein BpOF4_13240 [Bacillus pseudofirmus OF4]
gi|288546816|gb|ADC50699.1| hypothetical protein BpOF4_13240 [Bacillus pseudofirmus OF4]
Length = 96
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + ++ + LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRSKAHHLTPIFQ---VGKGGVNENMIEQIDDVLEARELIKVSVLQNCEFDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++V K+L E + +V IG T+++Y+ S
Sbjct: 59 DEVAKELSEGAKAELVQVIGSTIVLYKES 87
>gi|451343498|ref|ZP_21912570.1| YhbY family putative RNA-binding protein [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449337861|gb|EMD17017.1| YhbY family putative RNA-binding protein [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 95
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+KK L S AHSL + +GK G + + S + L+ EL+K+K+ TCP +
Sbjct: 2 LTNKQKKYLRSEAHSLNPIFQ---IGKDGTSTKQINSINDALKVKELIKVKLLGTCPQSI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRM 121
+V + T + VV IG T+I+Y+ S R+
Sbjct: 59 NEVSIDICSKTRAEVVHIIGHTIILYKQSEKRI 91
>gi|310643104|ref|YP_003947862.1| dihydrodipicolinate reductase [Paenibacillus polymyxa SC2]
gi|309248054|gb|ADO57621.1| dihydrodipicolinate reductase [Paenibacillus polymyxa SC2]
gi|392303904|emb|CCI70267.1| CRS2-associated factor 1 [Paenibacillus polymyxa M1]
Length = 98
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK+G + ++ + +E EL+K++I C +
Sbjct: 2 LTGKQKRYLRSMAHHLDPVFQ---VGKNGTNEHLMRHINDAIEKRELMKVQILNNCLDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++ ++L TGS +V IG T+I+Y+ S ++E
Sbjct: 59 HEIAEELAAETGSELVQLIGSTIILYKESRDHKQIE 94
>gi|326201577|ref|ZP_08191448.1| protein of unknown function UPF0044 [Clostridium papyrosolvens DSM
2782]
gi|325988177|gb|EGD49002.1| protein of unknown function UPF0044 [Clostridium papyrosolvens DSM
2782]
Length = 96
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S A++L + VGK GV+D ++ F + LEA EL+K + + +
Sbjct: 2 LTGKQRSYLRSLANNLQPIFQ---VGKGGVSDNMIKQFSDALEARELIKATVLKNAECDT 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + +++ E T S VV IG ++YRPS
Sbjct: 59 KTICEEIAEQTNSQVVQVIGSKFVLYRPS 87
>gi|70726321|ref|YP_253235.1| hypothetical protein SH1320 [Staphylococcus haemolyticus JCSC1435]
gi|68447045|dbj|BAE04629.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 96
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+ + L S AH++ + +GK+G+ D ++ +TLE EL+KI + + +
Sbjct: 2 LTGKQNRYLRSLAHNIDPIFQ---IGKAGINDNMIAQIDDTLENRELIKIHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L +AT S VV IG ++IYR S+
Sbjct: 59 NELASTLSDATKSEVVQVIGSMIVIYRESV 88
>gi|410456865|ref|ZP_11310716.1| hypothetical protein BABA_23425 [Bacillus bataviensis LMG 21833]
gi|409927247|gb|EKN64390.1| hypothetical protein BABA_23425 [Bacillus bataviensis LMG 21833]
Length = 96
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + ++ + LEA EL KI + + C +
Sbjct: 2 LTGKQKRFLRAKAHHLDPIFQ---VGKGGVNENMIKQIADALEARELFKISVLQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
+V + L + TG+ +V IG +++Y+ S+ +
Sbjct: 59 TEVAEHLAKGTGAEIVQIIGNIIVLYKESVEK 90
>gi|406956215|gb|EKD84395.1| hypothetical protein ACD_39C00075G0001 [uncultured bacterium]
Length = 101
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ ++K L AH L ++ +GK G+ ++ S +E NEL+KIK+ + P +
Sbjct: 2 KLSSNQRKHLEGLAHHLEPIVR---IGKQGLASKIILSVVEAFNTNELIKIKLLDSAPVD 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E+ ++ + +G+ +V IG+ +++YRP
Sbjct: 59 AEEAAIEICKKSGALLVRIIGRVIVLYRP 87
>gi|282882857|ref|ZP_06291462.1| RNA-binding protein YhbY [Peptoniphilus lacrimalis 315-B]
gi|300814148|ref|ZP_07094431.1| RNA-binding protein, YhbY family [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|281297268|gb|EFA89759.1| RNA-binding protein YhbY [Peptoniphilus lacrimalis 315-B]
gi|300511805|gb|EFK39022.1| RNA-binding protein, YhbY family [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 97
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
SY SL L + +GK G+++ + ++LE +EL+KIK+ + P E +++V+++ E
Sbjct: 8 SYLKSLANNLDPLVQIGKFGLSESLFDQLDKSLEDHELVKIKVLKNSPVEAKEIVQEILE 67
Query: 98 ATGSAVVSQIGQTVIIYRPSLTRMKLE 124
TG+ V QIG + IYR S K+E
Sbjct: 68 KTGAEFVQQIGSKLTIYRQSKENKKIE 94
>gi|329770261|ref|ZP_08261650.1| RNA-binding protein yqeI [Gemella sanguinis M325]
gi|328836965|gb|EGF86611.1| RNA-binding protein yqeI [Gemella sanguinis M325]
Length = 99
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K++L S AH L + VGKSGVT ++ + LE EL+K+ I + C + + V
Sbjct: 5 KQKRQLRSLAHHLSPIFQ---VGKSGVTSEMIQGIRDALEKRELIKVSILQNCEEDKDVV 61
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ L E T S +V IG T+++Y+ S
Sbjct: 62 AELLSERTSSELVQVIGHTIVLYKQS 87
>gi|340354703|ref|ZP_08677404.1| RNA-binding protein YhbY [Sporosarcina newyorkensis 2681]
gi|339623102|gb|EGQ27608.1| RNA-binding protein YhbY [Sporosarcina newyorkensis 2681]
Length = 96
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + +GKSG+T+ ++ E LEA ELLK+ + + C +
Sbjct: 2 LTGKQKRFLRSEAHHLQPLFQ---IGKSGLTEAILAQIDEALEARELLKVSVLQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ +++ G VV IG +++YR S
Sbjct: 59 NEIAERIGAFKGIEVVQVIGNIIVLYRES 87
>gi|373859116|ref|ZP_09601848.1| protein of unknown function UPF0044 [Bacillus sp. 1NLA3E]
gi|372451207|gb|EHP24686.1| protein of unknown function UPF0044 [Bacillus sp. 1NLA3E]
Length = 97
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K L S AH L + VGK GV D ++ LEA EL+KI + + C +
Sbjct: 2 LTGKQKSFLRSKAHHLDPIFQ---VGKGGVNDNMIEQITNALEARELMKISVLQNCEEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
+ V ++L + S +V IG+T+++Y+ S K+E
Sbjct: 59 DVVAQKLVTGSRSELVQVIGKTIVLYKESKENKKIE 94
>gi|317128281|ref|YP_004094563.1| hypothetical protein Bcell_1569 [Bacillus cellulosilyticus DSM
2522]
gi|315473229|gb|ADU29832.1| protein of unknown function UPF0044 [Bacillus cellulosilyticus DSM
2522]
Length = 97
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + ++ + LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRFLKSKAHHLKPIFQ---VGKGGVNENLIKQVNDALEARELIKVSVLQNCDEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++V + + E S VV IG T+++Y+ S + +E
Sbjct: 59 DEVAQTISEGARSEVVQLIGSTIVLYKESKNQKTIE 94
>gi|374324960|ref|YP_005078089.1| dihydrodipicolinate reductase [Paenibacillus terrae HPL-003]
gi|357203969|gb|AET61866.1| dihydrodipicolinate reductase [Paenibacillus terrae HPL-003]
Length = 98
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK+G + ++ + +E EL+K++I C +
Sbjct: 2 LTGKQKRYLRSMAHHLDPVFQ---VGKNGTNEHLMRHINDAIEKRELMKVQILNNCLDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++ ++L TGS +V IG T+I+Y+ S ++E
Sbjct: 59 HEIAEELATETGSELVQLIGSTIILYKESRDNKQIE 94
>gi|160915284|ref|ZP_02077497.1| hypothetical protein EUBDOL_01293 [Eubacterium dolichum DSM 3991]
gi|158433083|gb|EDP11372.1| putative RNA-binding protein, YhbY family [Eubacterium dolichum DSM
3991]
Length = 94
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K EL A + +K Q +GK +++ ++ + ++LEA+EL+K+ + +TCP
Sbjct: 2 LTGKQKSELRGIAQT--RKALFQ-IGKDAISENLIKTLQDSLEAHELVKLSLLKTCPITP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ +L AT S VV IG TVI+YR S
Sbjct: 59 NEAAIELSAATHSEVVQIIGHTVILYRRS 87
>gi|310779504|ref|YP_003967837.1| hypothetical protein [Ilyobacter polytropus DSM 2926]
gi|309748827|gb|ADO83489.1| protein of unknown function UPF0044 [Ilyobacter polytropus DSM
2926]
Length = 101
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL K++ L AH L ++ +GK G++ +V SF++ +E+ EL+K+KI + +
Sbjct: 2 KLNSKQRDFLRKEAHDLDPIVR---IGKDGMSHNLVESFLQAIESRELIKVKILQNSEVD 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++V +L E TGS +V IG+T+I Y+ +
Sbjct: 59 KKEVAFELAEKTGSELVGIIGKTLIFYKEN 88
>gi|376260346|ref|YP_005147066.1| putative RNA-binding protein, YhbY family [Clostridium sp. BNL1100]
gi|373944340|gb|AEY65261.1| putative RNA-binding protein, YhbY family [Clostridium sp. BNL1100]
Length = 107
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S A++L + VGK GV+D ++ F + LEA EL+K + + +
Sbjct: 13 LTGKQRSYLRSLANNLQPIFQ---VGKGGVSDNMIKQFSDALEARELIKATVLKNAECDT 69
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + +++ E T S VV IG ++YRPS
Sbjct: 70 KTICEEIAEQTNSEVVQVIGSKFVLYRPS 98
>gi|319939797|ref|ZP_08014153.1| RNA binding protein [Streptococcus anginosus 1_2_62CV]
gi|418963085|ref|ZP_13514927.1| RNA-binding protein, YhbY family [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|319811010|gb|EFW07325.1| RNA binding protein [Streptococcus anginosus 1_2_62CV]
gi|383343951|gb|EID22122.1| RNA-binding protein, YhbY family [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 103
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+T+I+Y+ S
Sbjct: 60 HEVSEILEEEIGVNTVQKIGRTLILYKQS 88
>gi|49187227|ref|YP_030479.1| hypothetical protein BAS4231 [Bacillus anthracis str. Sterne]
gi|49478612|ref|YP_038387.1| hypothetical protein BT9727_4069 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52141170|ref|YP_085658.1| hypothetical protein BCZK4079 [Bacillus cereus E33L]
gi|49181154|gb|AAT56530.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
Sterne]
gi|49330168|gb|AAT60814.1| conserved hypothetical protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51974639|gb|AAU16189.1| conserved hypothetical protein [Bacillus cereus E33L]
Length = 121
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + ++ +TLEA EL K+ + + C +
Sbjct: 26 LTGKQKRFLRAQAHHLTPIFQ---VGKGGVNENMIKQIADTLEARELFKVSVLQNCEFDR 82
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + + +V IG T+++Y+ S
Sbjct: 83 REVAEELAKGARAEIVQVIGSTIVLYKES 111
>gi|375309510|ref|ZP_09774791.1| protein of unknown function UPF0044 [Paenibacillus sp. Aloe-11]
gi|375078819|gb|EHS57046.1| protein of unknown function UPF0044 [Paenibacillus sp. Aloe-11]
Length = 98
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK+G + ++ + +E EL+K++I C +
Sbjct: 2 LTGKQKRYLRSMAHHLDPVFQ---VGKNGTNEHLMRHINDAIEKRELMKVQILNNCLDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++ ++L TGS +V IG T+I+Y+ S ++E
Sbjct: 59 HEIAEELATETGSELVQIIGSTIILYKESRDHKQIE 94
>gi|374583258|ref|ZP_09656352.1| putative RNA-binding protein, YhbY family [Desulfosporosinus
youngiae DSM 17734]
gi|374419340|gb|EHQ91775.1| putative RNA-binding protein, YhbY family [Desulfosporosinus
youngiae DSM 17734]
Length = 97
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + + + L+ VGK G+T+ VVT ET+EA EL+K ++ + C E
Sbjct: 2 LTGKQKRFLRAMGNEMDPILQ---VGKGGITENVVTQTSETIEARELIKGRVLQNCLEEP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ V +L E TGS +V IG+ ++++ S
Sbjct: 59 KTVAAELAERTGSDLVQVIGRNFLLFKQS 87
>gi|379723333|ref|YP_005315464.1| hypothetical protein PM3016_5623 [Paenibacillus mucilaginosus 3016]
gi|386726060|ref|YP_006192386.1| hypothetical protein B2K_28645 [Paenibacillus mucilaginosus K02]
gi|378572005|gb|AFC32315.1| YqeI [Paenibacillus mucilaginosus 3016]
gi|384093185|gb|AFH64621.1| hypothetical protein B2K_28645 [Paenibacillus mucilaginosus K02]
Length = 97
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV D ++ E +E EL+K+ + C +
Sbjct: 2 LTGKQKRYLRSLAHHLDPIFQ---VGKGGVNDHIIRHINEAIETRELIKVTVLNNCMEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++V +QL + + +V IG+ V++Y+ S
Sbjct: 59 DEVAQQLADGAKAELVQVIGKIVVLYKES 87
>gi|220928749|ref|YP_002505658.1| hypothetical protein Ccel_1324 [Clostridium cellulolyticum H10]
gi|219999077|gb|ACL75678.1| protein of unknown function UPF0044 [Clostridium cellulolyticum
H10]
Length = 96
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S A++L + VGK GV+D ++ F + LEA EL+K + + +
Sbjct: 2 LTGKQRSYLRSIANNLHPIFQ---VGKGGVSDNLIKQFSDALEARELIKATVLKNAECDT 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + +++ E T S VV IG ++YRPS
Sbjct: 59 KTICEEIAEQTNSEVVQVIGSKFVLYRPS 87
>gi|198284445|ref|YP_002220766.1| hypothetical protein Lferr_2358 [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218666681|ref|YP_002427112.1| hypothetical protein AFE_2737 [Acidithiobacillus ferrooxidans ATCC
23270]
gi|415963265|ref|ZP_11557868.1| hypothetical protein GGI1_02540 [Acidithiobacillus sp. GGI-221]
gi|198248966|gb|ACH84559.1| protein of unknown function UPF0044 [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218518894|gb|ACK79480.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
23270]
gi|339832887|gb|EGQ60769.1| hypothetical protein GGI1_02540 [Acidithiobacillus sp. GGI-221]
Length = 94
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K ++ L AH+L + ++G G+TDGV+ + A+EL+K+++ + E
Sbjct: 2 LDAKHRQALRGQAHALKPVV---IIGAHGITDGVLAELEVAIHAHELVKVRLPQVSHDER 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+ ++K L A+ + VV IG+ +I+YRP
Sbjct: 59 DAMIKTLSTASHADVVGHIGRVLILYRP 86
>gi|308069992|ref|YP_003871597.1| hypothetical protein PPE_03241 [Paenibacillus polymyxa E681]
gi|305859271|gb|ADM71059.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 98
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK+G + ++ + +E EL+K++I C +
Sbjct: 2 LTGKQKRYLRSMAHHLDPVFQ---VGKNGTNEHLMRHINDAIEKRELMKVQILNNCLDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++ ++L TGS +V IG T+I+Y+ S ++E
Sbjct: 59 HEIAEELAAETGSELVQIIGSTIILYKESRDHKEIE 94
>gi|315222441|ref|ZP_07864342.1| conserved hypothetical protein TIGR00253 [Streptococcus anginosus
F0211]
gi|315188465|gb|EFU22179.1| conserved hypothetical protein TIGR00253 [Streptococcus anginosus
F0211]
Length = 103
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L + AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNNQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+T+I+Y+ S
Sbjct: 60 HEVAEILEEEIGVNTVQKIGRTLILYKQS 88
>gi|381206074|ref|ZP_09913145.1| hypothetical protein SclubJA_10659 [SAR324 cluster bacterium
JCVI-SC AAA005]
Length = 108
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K+++ L + AHSL L+ +GK+G++D + L +EL+K+K+ P
Sbjct: 11 MTGKQRRALRALAHSLKPLLQ---LGKNGLSDQFLDQLNTALLQHELIKLKVLENAPNTP 67
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+ K LEE V+ IG T+I+YRP
Sbjct: 68 RECAKILEEQPALEVIQAIGSTIILYRP 95
>gi|358052461|ref|ZP_09146332.1| RNA-binding protein YhbY [Staphylococcus simiae CCM 7213]
gi|357258049|gb|EHJ08235.1| RNA-binding protein YhbY [Staphylococcus simiae CCM 7213]
Length = 96
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ +TLE EL+KI + + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQ---IGKGGINENMIQQIDDTLENRELMKIHVLQNNFEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+D+ +QL AT S +V IG ++IYR S
Sbjct: 59 KDLAEQLTVATKSELVQVIGSMIVIYRES 87
>gi|289434769|ref|YP_003464641.1| CRS1 / YhbY domain family protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289171013|emb|CBH27555.1| CRS1 / YhbY domain family protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 96
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT +K+ L AHS+ + VGK V+ ++ E LEA EL+KI I + C +
Sbjct: 2 LTATQKRFLRKEAHSIQPIFQ---VGKGSVSPNLIIQVKEALEARELIKISILQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
+ V +++ TG+ +V IG+T+I+Y+ S+ + ++
Sbjct: 59 QTVAEKISSRTGAYIVQVIGRTIILYKQSVNKQQI 93
>gi|30264405|ref|NP_846782.1| hypothetical protein BA_4560 [Bacillus anthracis str. Ames]
gi|42783460|ref|NP_980707.1| hypothetical protein BCE_4414 [Bacillus cereus ATCC 10987]
gi|47529856|ref|YP_021205.1| hypothetical protein GBAA_4560 [Bacillus anthracis str. 'Ames
Ancestor']
gi|47569329|ref|ZP_00240013.1| conserved hypothetical protein protein TIGR00253 [Bacillus cereus
G9241]
gi|118479499|ref|YP_896650.1| hypothetical protein BALH_3921 [Bacillus thuringiensis str. Al
Hakam]
gi|165873256|ref|ZP_02217866.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
A0488]
gi|167634591|ref|ZP_02392911.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
A0442]
gi|167638540|ref|ZP_02396816.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
A0193]
gi|170687343|ref|ZP_02878560.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
A0465]
gi|177653212|ref|ZP_02935464.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
A0174]
gi|190567031|ref|ZP_03019947.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
Tsiankovskii-I]
gi|196034343|ref|ZP_03101752.1| conserved hypothetical protein TIGR00253 [Bacillus cereus W]
gi|196039157|ref|ZP_03106463.1| conserved hypothetical protein TIGR00253 [Bacillus cereus
NVH0597-99]
gi|196044719|ref|ZP_03111953.1| conserved hypothetical protein TIGR00253 [Bacillus cereus 03BB108]
gi|206969974|ref|ZP_03230928.1| conserved hypothetical protein TIGR00253 [Bacillus cereus AH1134]
gi|206975962|ref|ZP_03236872.1| conserved hypothetical protein TIGR00253 [Bacillus cereus H3081.97]
gi|217961823|ref|YP_002340393.1| hypothetical protein BCAH187_A4466 [Bacillus cereus AH187]
gi|218235152|ref|YP_002369143.1| hypothetical protein BCB4264_A4453 [Bacillus cereus B4264]
gi|218899501|ref|YP_002447912.1| hypothetical protein BCG9842_B0784 [Bacillus cereus G9842]
gi|218905470|ref|YP_002453304.1| hypothetical protein BCAH820_4355 [Bacillus cereus AH820]
gi|222097778|ref|YP_002531835.1| hypothetical protein BCQ_4119 [Bacillus cereus Q1]
gi|225866314|ref|YP_002751692.1| conserved hypothetical protein TIGR00253 [Bacillus cereus 03BB102]
gi|227817110|ref|YP_002817119.1| hypothetical protein BAMEG_4596 [Bacillus anthracis str. CDC 684]
gi|228902859|ref|ZP_04067002.1| hypothetical protein bthur0014_40290 [Bacillus thuringiensis IBL
4222]
gi|228910171|ref|ZP_04073990.1| hypothetical protein bthur0013_43190 [Bacillus thuringiensis IBL
200]
gi|228916965|ref|ZP_04080526.1| hypothetical protein bthur0012_41780 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228923086|ref|ZP_04086378.1| hypothetical protein bthur0011_40660 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228929378|ref|ZP_04092401.1| hypothetical protein bthur0010_40640 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935654|ref|ZP_04098468.1| hypothetical protein bthur0009_41000 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228948047|ref|ZP_04110332.1| hypothetical protein bthur0007_41740 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228954620|ref|ZP_04116644.1| hypothetical protein bthur0006_39890 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228960603|ref|ZP_04122250.1| hypothetical protein bthur0005_40670 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228987586|ref|ZP_04147702.1| hypothetical protein bthur0001_42560 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229048040|ref|ZP_04193615.1| hypothetical protein bcere0027_40140 [Bacillus cereus AH676]
gi|229071840|ref|ZP_04205053.1| hypothetical protein bcere0025_40090 [Bacillus cereus F65185]
gi|229081597|ref|ZP_04214093.1| hypothetical protein bcere0023_42280 [Bacillus cereus Rock4-2]
gi|229093403|ref|ZP_04224508.1| hypothetical protein bcere0021_41290 [Bacillus cereus Rock3-42]
gi|229111807|ref|ZP_04241353.1| hypothetical protein bcere0018_40510 [Bacillus cereus Rock1-15]
gi|229123872|ref|ZP_04253065.1| hypothetical protein bcere0016_41580 [Bacillus cereus 95/8201]
gi|229129614|ref|ZP_04258582.1| hypothetical protein bcere0015_40560 [Bacillus cereus BDRD-Cer4]
gi|229141071|ref|ZP_04269613.1| hypothetical protein bcere0013_41650 [Bacillus cereus BDRD-ST26]
gi|229146905|ref|ZP_04275269.1| hypothetical protein bcere0012_40440 [Bacillus cereus BDRD-ST24]
gi|229152537|ref|ZP_04280727.1| hypothetical protein bcere0011_40730 [Bacillus cereus m1550]
gi|229157948|ref|ZP_04286020.1| hypothetical protein bcere0010_41280 [Bacillus cereus ATCC 4342]
gi|229180611|ref|ZP_04307952.1| hypothetical protein bcere0005_39550 [Bacillus cereus 172560W]
gi|229186573|ref|ZP_04313734.1| hypothetical protein bcere0004_41160 [Bacillus cereus BGSC 6E1]
gi|229192546|ref|ZP_04319507.1| hypothetical protein bcere0002_41970 [Bacillus cereus ATCC 10876]
gi|229198461|ref|ZP_04325165.1| hypothetical protein bcere0001_39890 [Bacillus cereus m1293]
gi|254684090|ref|ZP_05147950.1| hypothetical protein BantC_09575 [Bacillus anthracis str.
CNEVA-9066]
gi|254721924|ref|ZP_05183713.1| hypothetical protein BantA1_05575 [Bacillus anthracis str. A1055]
gi|254736438|ref|ZP_05194144.1| hypothetical protein BantWNA_14846 [Bacillus anthracis str. Western
North America USA6153]
gi|254741475|ref|ZP_05199162.1| hypothetical protein BantKB_10777 [Bacillus anthracis str. Kruger
B]
gi|254750914|ref|ZP_05202953.1| hypothetical protein BantV_00526 [Bacillus anthracis str. Vollum]
gi|254757758|ref|ZP_05209785.1| hypothetical protein BantA9_05556 [Bacillus anthracis str.
Australia 94]
gi|296504826|ref|YP_003666526.1| RNA-binding protein [Bacillus thuringiensis BMB171]
gi|300118674|ref|ZP_07056402.1| hypothetical protein BCSJ1_16055 [Bacillus cereus SJ1]
gi|301055825|ref|YP_003794036.1| hypothetical protein BACI_c43020 [Bacillus cereus biovar anthracis
str. CI]
gi|365158877|ref|ZP_09355067.1| hypothetical protein HMPREF1014_00530 [Bacillus sp. 7_6_55CFAA_CT2]
gi|375286340|ref|YP_005106779.1| hypothetical protein BCN_4246 [Bacillus cereus NC7401]
gi|376268231|ref|YP_005120943.1| RNA binding protein [Bacillus cereus F837/76]
gi|384182153|ref|YP_005567915.1| hypothetical protein YBT020_21345 [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|386738223|ref|YP_006211404.1| hypothetical protein [Bacillus anthracis str. H9401]
gi|402555532|ref|YP_006596803.1| hypothetical protein BCK_13515 [Bacillus cereus FRI-35]
gi|402564190|ref|YP_006606914.1| hypothetical protein BTG_27410 [Bacillus thuringiensis HD-771]
gi|421506587|ref|ZP_15953510.1| hypothetical protein B353_01625 [Bacillus anthracis str. UR-1]
gi|421638408|ref|ZP_16079004.1| hypothetical protein BABF1_14872 [Bacillus anthracis str. BF1]
gi|423354826|ref|ZP_17332451.1| hypothetical protein IAU_02900 [Bacillus cereus IS075]
gi|423358630|ref|ZP_17336133.1| hypothetical protein IC1_00610 [Bacillus cereus VD022]
gi|423373788|ref|ZP_17351127.1| hypothetical protein IC5_02843 [Bacillus cereus AND1407]
gi|423411870|ref|ZP_17388990.1| hypothetical protein IE1_01174 [Bacillus cereus BAG3O-2]
gi|423426467|ref|ZP_17403498.1| hypothetical protein IE5_04156 [Bacillus cereus BAG3X2-2]
gi|423432344|ref|ZP_17409348.1| hypothetical protein IE7_04160 [Bacillus cereus BAG4O-1]
gi|423437779|ref|ZP_17414760.1| hypothetical protein IE9_03960 [Bacillus cereus BAG4X12-1]
gi|423502981|ref|ZP_17479573.1| hypothetical protein IG1_00547 [Bacillus cereus HD73]
gi|423549925|ref|ZP_17526252.1| hypothetical protein IGW_00556 [Bacillus cereus ISP3191]
gi|423561198|ref|ZP_17537474.1| hypothetical protein II5_00602 [Bacillus cereus MSX-A1]
gi|423570573|ref|ZP_17546818.1| hypothetical protein II7_03794 [Bacillus cereus MSX-A12]
gi|423573987|ref|ZP_17550106.1| hypothetical protein II9_01208 [Bacillus cereus MSX-D12]
gi|423582541|ref|ZP_17558652.1| hypothetical protein IIA_04056 [Bacillus cereus VD014]
gi|423585187|ref|ZP_17561274.1| hypothetical protein IIE_00599 [Bacillus cereus VD045]
gi|423604017|ref|ZP_17579910.1| hypothetical protein IIK_00598 [Bacillus cereus VD102]
gi|423631056|ref|ZP_17606803.1| hypothetical protein IK5_03906 [Bacillus cereus VD154]
gi|423634843|ref|ZP_17610496.1| hypothetical protein IK7_01252 [Bacillus cereus VD156]
gi|423640586|ref|ZP_17616204.1| hypothetical protein IK9_00531 [Bacillus cereus VD166]
gi|423650198|ref|ZP_17625768.1| hypothetical protein IKA_03985 [Bacillus cereus VD169]
gi|423657289|ref|ZP_17632588.1| hypothetical protein IKG_04277 [Bacillus cereus VD200]
gi|434377501|ref|YP_006612145.1| hypothetical protein BTF1_20280 [Bacillus thuringiensis HD-789]
gi|449091297|ref|YP_007423738.1| hypothetical protein HD73_4639 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|30259063|gb|AAP28268.1| putative RNA-binding protein, YhbY family [Bacillus anthracis str.
Ames]
gi|42739389|gb|AAS43315.1| conserved hypothetical protein TIGR00253 [Bacillus cereus ATCC
10987]
gi|47505004|gb|AAT33680.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
'Ames Ancestor']
gi|47554000|gb|EAL12367.1| conserved hypothetical protein protein TIGR00253 [Bacillus cereus
G9241]
gi|118418724|gb|ABK87143.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|164711015|gb|EDR16582.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
A0488]
gi|167513388|gb|EDR88758.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
A0193]
gi|167530043|gb|EDR92778.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
A0442]
gi|170668538|gb|EDT19284.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
A0465]
gi|172081494|gb|EDT66566.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
A0174]
gi|190562022|gb|EDV15991.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
Tsiankovskii-I]
gi|195992885|gb|EDX56844.1| conserved hypothetical protein TIGR00253 [Bacillus cereus W]
gi|196024207|gb|EDX62880.1| conserved hypothetical protein TIGR00253 [Bacillus cereus 03BB108]
gi|196029784|gb|EDX68385.1| conserved hypothetical protein TIGR00253 [Bacillus cereus
NVH0597-99]
gi|206735662|gb|EDZ52830.1| conserved hypothetical protein TIGR00253 [Bacillus cereus AH1134]
gi|206745714|gb|EDZ57111.1| conserved hypothetical protein TIGR00253 [Bacillus cereus H3081.97]
gi|217067116|gb|ACJ81366.1| conserved hypothetical protein TIGR00253 [Bacillus cereus AH187]
gi|218163109|gb|ACK63101.1| conserved hypothetical protein TIGR00253 [Bacillus cereus B4264]
gi|218538148|gb|ACK90546.1| conserved hypothetical protein TIGR00253 [Bacillus cereus AH820]
gi|218542552|gb|ACK94946.1| conserved hypothetical protein TIGR00253 [Bacillus cereus G9842]
gi|221241836|gb|ACM14546.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|225790640|gb|ACO30857.1| conserved hypothetical protein TIGR00253 [Bacillus cereus 03BB102]
gi|227005368|gb|ACP15111.1| conserved hypothetical protein TIGR00253 [Bacillus anthracis str.
CDC 684]
gi|228584964|gb|EEK43078.1| hypothetical protein bcere0001_39890 [Bacillus cereus m1293]
gi|228590853|gb|EEK48711.1| hypothetical protein bcere0002_41970 [Bacillus cereus ATCC 10876]
gi|228596832|gb|EEK54491.1| hypothetical protein bcere0004_41160 [Bacillus cereus BGSC 6E1]
gi|228602854|gb|EEK60334.1| hypothetical protein bcere0005_39550 [Bacillus cereus 172560W]
gi|228625508|gb|EEK82263.1| hypothetical protein bcere0010_41280 [Bacillus cereus ATCC 4342]
gi|228630903|gb|EEK87542.1| hypothetical protein bcere0011_40730 [Bacillus cereus m1550]
gi|228636504|gb|EEK92970.1| hypothetical protein bcere0012_40440 [Bacillus cereus BDRD-ST24]
gi|228642349|gb|EEK98638.1| hypothetical protein bcere0013_41650 [Bacillus cereus BDRD-ST26]
gi|228653731|gb|EEL09601.1| hypothetical protein bcere0015_40560 [Bacillus cereus BDRD-Cer4]
gi|228659586|gb|EEL15233.1| hypothetical protein bcere0016_41580 [Bacillus cereus 95/8201]
gi|228671563|gb|EEL26861.1| hypothetical protein bcere0018_40510 [Bacillus cereus Rock1-15]
gi|228689997|gb|EEL43800.1| hypothetical protein bcere0021_41290 [Bacillus cereus Rock3-42]
gi|228701703|gb|EEL54193.1| hypothetical protein bcere0023_42280 [Bacillus cereus Rock4-2]
gi|228711270|gb|EEL63232.1| hypothetical protein bcere0025_40090 [Bacillus cereus F65185]
gi|228723284|gb|EEL74654.1| hypothetical protein bcere0027_40140 [Bacillus cereus AH676]
gi|228772127|gb|EEM20577.1| hypothetical protein bthur0001_42560 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228799082|gb|EEM46052.1| hypothetical protein bthur0005_40670 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228805066|gb|EEM51661.1| hypothetical protein bthur0006_39890 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228811633|gb|EEM57969.1| hypothetical protein bthur0007_41740 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824014|gb|EEM69832.1| hypothetical protein bthur0009_41000 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830284|gb|EEM75898.1| hypothetical protein bthur0010_40640 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228836584|gb|EEM81933.1| hypothetical protein bthur0011_40660 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228842686|gb|EEM87773.1| hypothetical protein bthur0012_41780 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228849454|gb|EEM94289.1| hypothetical protein bthur0013_43190 [Bacillus thuringiensis IBL
200]
gi|228856783|gb|EEN01300.1| hypothetical protein bthur0014_40290 [Bacillus thuringiensis IBL
4222]
gi|296325878|gb|ADH08806.1| RNA-binding protein [Bacillus thuringiensis BMB171]
gi|298723923|gb|EFI64637.1| hypothetical protein BCSJ1_16055 [Bacillus cereus SJ1]
gi|300377994|gb|ADK06898.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
str. CI]
gi|324328237|gb|ADY23497.1| hypothetical protein YBT020_21345 [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|358354867|dbj|BAL20039.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|363626247|gb|EHL77244.1| hypothetical protein HMPREF1014_00530 [Bacillus sp. 7_6_55CFAA_CT2]
gi|364514031|gb|AEW57430.1| RNA binding protein [Bacillus cereus F837/76]
gi|384388075|gb|AFH85736.1| Hypothetical Protein H9401_4350 [Bacillus anthracis str. H9401]
gi|401084502|gb|EJP92748.1| hypothetical protein IC1_00610 [Bacillus cereus VD022]
gi|401085830|gb|EJP94064.1| hypothetical protein IAU_02900 [Bacillus cereus IS075]
gi|401095189|gb|EJQ03249.1| hypothetical protein IC5_02843 [Bacillus cereus AND1407]
gi|401103938|gb|EJQ11915.1| hypothetical protein IE1_01174 [Bacillus cereus BAG3O-2]
gi|401111214|gb|EJQ19113.1| hypothetical protein IE5_04156 [Bacillus cereus BAG3X2-2]
gi|401117100|gb|EJQ24938.1| hypothetical protein IE7_04160 [Bacillus cereus BAG4O-1]
gi|401120934|gb|EJQ28730.1| hypothetical protein IE9_03960 [Bacillus cereus BAG4X12-1]
gi|401189541|gb|EJQ96591.1| hypothetical protein IGW_00556 [Bacillus cereus ISP3191]
gi|401201455|gb|EJR08320.1| hypothetical protein II5_00602 [Bacillus cereus MSX-A1]
gi|401203769|gb|EJR10604.1| hypothetical protein II7_03794 [Bacillus cereus MSX-A12]
gi|401212556|gb|EJR19299.1| hypothetical protein II9_01208 [Bacillus cereus MSX-D12]
gi|401213420|gb|EJR20161.1| hypothetical protein IIA_04056 [Bacillus cereus VD014]
gi|401233830|gb|EJR40316.1| hypothetical protein IIE_00599 [Bacillus cereus VD045]
gi|401245703|gb|EJR52056.1| hypothetical protein IIK_00598 [Bacillus cereus VD102]
gi|401264423|gb|EJR70535.1| hypothetical protein IK5_03906 [Bacillus cereus VD154]
gi|401278829|gb|EJR84759.1| hypothetical protein IK7_01252 [Bacillus cereus VD156]
gi|401279647|gb|EJR85569.1| hypothetical protein IK9_00531 [Bacillus cereus VD166]
gi|401282616|gb|EJR88515.1| hypothetical protein IKA_03985 [Bacillus cereus VD169]
gi|401290032|gb|EJR95736.1| hypothetical protein IKG_04277 [Bacillus cereus VD200]
gi|401792842|gb|AFQ18881.1| hypothetical protein BTG_27410 [Bacillus thuringiensis HD-771]
gi|401796742|gb|AFQ10601.1| hypothetical protein BCK_13515 [Bacillus cereus FRI-35]
gi|401823580|gb|EJT22727.1| hypothetical protein B353_01625 [Bacillus anthracis str. UR-1]
gi|401876058|gb|AFQ28225.1| hypothetical protein BTF1_20280 [Bacillus thuringiensis HD-789]
gi|402459202|gb|EJV90939.1| hypothetical protein IG1_00547 [Bacillus cereus HD73]
gi|403394834|gb|EJY92074.1| hypothetical protein BABF1_14872 [Bacillus anthracis str. BF1]
gi|449025054|gb|AGE80217.1| hypothetical protein HD73_4639 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 97
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + ++ +TLEA EL K+ + + C +
Sbjct: 2 LTGKQKRFLRAQAHHLTPIFQ---VGKGGVNENMIKQIADTLEARELFKVSVLQNCEFDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + + +V IG T+++Y+ S
Sbjct: 59 REVAEELAKGARAEIVQVIGSTIVLYKES 87
>gi|239637594|ref|ZP_04678566.1| conserved hypothetical protein [Staphylococcus warneri L37603]
gi|239596812|gb|EEQ79337.1| conserved hypothetical protein [Staphylococcus warneri L37603]
Length = 96
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH+ + +GK G+ + +V ETLE EL+KI + + +
Sbjct: 2 LTGKQKRYLRSLAHNTDPTFQ---IGKGGINENMVNQIDETLEKRELIKIHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ L EAT S VV IG +++YR S
Sbjct: 59 NELATTLGEATNSEVVQVIGSMIVLYRES 87
>gi|311031593|ref|ZP_07709683.1| RNA binding protein [Bacillus sp. m3-13]
Length = 97
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + + E LE ELLK+ + + C +
Sbjct: 2 LTGKQKRFLRAEAHHLDPIFQ---VGKGGVNENMTKQISEALEVRELLKVSVLQNCDEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+DV ++L T + +V IG T+I+Y+ S
Sbjct: 59 KDVAQELVAGTKAELVQVIGSTIILYKES 87
>gi|262282076|ref|ZP_06059845.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
gi|262262530|gb|EEY81227.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
Length = 103
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+KI + + +
Sbjct: 3 LTSKQRAFLNSQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKITLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILYKQS 88
>gi|242373899|ref|ZP_04819473.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W1]
gi|242348453|gb|EES40055.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W1]
Length = 96
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH+ + +GK G+ + ++ ETLE EL+KI + + +
Sbjct: 2 LTGKQKRYLRSLAHNTDPTFQ---IGKGGINENMINQIDETLENRELIKIHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + L EAT S +V IG +++YR S
Sbjct: 59 NELARALSEATKSELVQVIGSMIVLYRES 87
>gi|315303237|ref|ZP_07873885.1| probable RNA-binding protein YqeI [Listeria ivanovii FSL F6-596]
gi|313628394|gb|EFR96879.1| probable RNA-binding protein YqeI [Listeria ivanovii FSL F6-596]
Length = 96
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT +K+ L AHS+ + VGK V+ ++ E LEA EL+KI I + C +
Sbjct: 2 LTATQKRFLRKEAHSIQPIFQ---VGKGSVSPNLIIQVKEALEARELIKISILQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
+ V +++ TG+ ++ IG+T+I+Y+ S+ + ++
Sbjct: 59 QTVAEKISSRTGADIIQVIGRTIILYKTSVNKQQI 93
>gi|392531383|ref|ZP_10278520.1| putative RNA-binding protein [Carnobacterium maltaromaticum ATCC
35586]
gi|414083275|ref|YP_006991983.1| CRS1 / YhbY domain-containing protein [Carnobacterium
maltaromaticum LMA28]
gi|412996859|emb|CCO10668.1| CRS1 / YhbY domain protein [Carnobacterium maltaromaticum LMA28]
Length = 105
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KLT K+K+ L S AH L + VGK G+ D +V E +E EL+K+ + + E
Sbjct: 2 KLTGKQKRFLRSQAHHLTPIFQ---VGKGGLNDDMVKQIGEAVEKRELIKVSLLQNTDEE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++DV LE+A V IG+ +++++PS
Sbjct: 59 VDDVALALEKALKVNAVQVIGRVIVLFKPS 88
>gi|406659580|ref|ZP_11067718.1| RNA-binding protein [Streptococcus iniae 9117]
gi|405577689|gb|EKB51837.1| RNA-binding protein [Streptococcus iniae 9117]
Length = 102
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ + + TS L+A EL+KI + + ++
Sbjct: 2 LTSKQRAFLKSEAHSLKPIIQ---IGKNGLNNEIKTSVRNALDARELIKITLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV + LEE G V +IG+ +I+Y+ S
Sbjct: 59 NDVAETLEEEIGCDTVLKIGRVLILYKVS 87
>gi|375091514|ref|ZP_09737804.1| YhbY family putative RNA-binding protein [Helcococcus kunzii ATCC
51366]
gi|374563377|gb|EHR34696.1| YhbY family putative RNA-binding protein [Helcococcus kunzii ATCC
51366]
Length = 95
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K++K L S A+++ K+ ++GK+G+T+ ++ +TLEANE++KIKI + + ++
Sbjct: 5 KQRKYLKSLANTIDPKI---IIGKNGITENLLEQINDTLEANEIVKIKILKNNLFDDKET 61
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ E + VS +G +IYR S
Sbjct: 62 IDEILEKLDAEFVSHMGSKFVIYRQS 87
>gi|357417785|ref|YP_004930805.1| hypothetical protein DSC_10600 [Pseudoxanthomonas spadix BD-a59]
gi|355335363|gb|AER56764.1| hypothetical protein DSC_10600 [Pseudoxanthomonas spadix BD-a59]
Length = 101
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G G+++ + E LE +EL+K+K+
Sbjct: 5 LTAAQNRFLRGQAHGLKAVLQT---GDKGLSEAFLAGLEEVLERHELIKVKLAAEDRQAR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E ++ Q+ + TG+AVV +IG VI+YRPS
Sbjct: 62 EAMIGQIAQRTGAAVVQRIGHVVILYRPS 90
>gi|393200250|ref|YP_006462092.1| RNA-binding protein containing KH domain [Solibacillus silvestris
StLB046]
gi|406667403|ref|ZP_11075161.1| RNA-binding protein [Bacillus isronensis B3W22]
gi|327439581|dbj|BAK15946.1| predicted RNA-binding protein containing KH domain [Solibacillus
silvestris StLB046]
gi|405384771|gb|EKB44212.1| RNA-binding protein [Bacillus isronensis B3W22]
Length = 101
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV D ++ + LEA EL+K++I C +
Sbjct: 2 LTGKQKRFLRAEAHHLDPIFQ---VGKGGVNDAMIAQLRDVLEARELIKVRILDNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V ++L T + +V IG TV++Y+ S
Sbjct: 59 NVVAEELAAGTRAELVQLIGLTVVLYKES 87
>gi|430750626|ref|YP_007213534.1| RNA-binding protein [Thermobacillus composti KWC4]
gi|430734591|gb|AGA58536.1| putative RNA-binding protein, YhbY family [Thermobacillus composti
KWC4]
Length = 96
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK G+ + ++ E LEA EL+K+ + G+
Sbjct: 2 LTGKQKRFLRALAHPLNPIFQ---VGKGGINEHLIRHVSEALEARELIKVSVLNNQEGDP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
+++ ++ E G+ +V IG+T+++YR S K+E
Sbjct: 59 KEIGAEIAERAGAELVQVIGKTIVLYRESKDHKKIE 94
>gi|410460449|ref|ZP_11314127.1| hypothetical protein BAZO_14404 [Bacillus azotoformans LMG 9581]
gi|409927064|gb|EKN64210.1| hypothetical protein BAZO_14404 [Bacillus azotoformans LMG 9581]
Length = 96
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + ++ E LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRSKAHHLNPIFQ---VGKGGVNENMIKQIGEALEARELIKVSVLQNCEFDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++V + L + + +V IG T+++Y+ S+
Sbjct: 59 DEVAESLAKGAKAELVQIIGNTIVLYKESI 88
>gi|357636616|ref|ZP_09134491.1| RNA-binding protein, YhbY family [Streptococcus macacae NCTC 11558]
gi|357585070|gb|EHJ52273.1| RNA-binding protein, YhbY family [Streptococcus macacae NCTC 11558]
Length = 102
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + L
Sbjct: 2 LTSKQRAFLKSEAHSLKPIIQ---IGKNGLNDPIKTSIRKALDARELIKVTLLQNTDENL 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV LEE G V +IG+ +I+Y+ S
Sbjct: 59 ADVAAVLEEEIGLETVLKIGRILILYKES 87
>gi|73662472|ref|YP_301253.1| hypothetical protein SSP1163 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|418576031|ref|ZP_13140177.1| hypothetical protein SSME_12330 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|72494987|dbj|BAE18308.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|379325093|gb|EHY92225.1| hypothetical protein SSME_12330 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 96
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK+G+ D +V + LE EL+KI + + +
Sbjct: 2 LTGKQKRFLRSKAHNVDPTFQ---IGKAGINDNMVAQIQDILENRELIKIHVLQNNFEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
D+ + L +AT S +V IG +++Y+ S
Sbjct: 59 NDLAQSLSDATRSDIVQVIGSMIVLYKES 87
>gi|251781783|ref|YP_002996085.1| RNA binding protein [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|408401051|ref|YP_006859014.1| RNA binding protein [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|242390412|dbj|BAH80871.1| hypothetical RNA binding protein [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|407967279|dbj|BAM60517.1| RNA binding protein [Streptococcus dysgalactiae subsp. equisimilis
RE378]
Length = 129
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + ++
Sbjct: 29 LTSKQRAFLKSEAHSLKPIIQ---IGKNGLNDHIKTSIRQALDARELIKVTLLQNTDEDI 85
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 86 HEVAEILEEEIGCDTVLKIGRILILYKVS 114
>gi|349573990|ref|ZP_08885953.1| RNA-binding protein YhbY [Neisseria shayeganii 871]
gi|348014468|gb|EGY53349.1| RNA-binding protein YhbY [Neisseria shayeganii 871]
Length = 95
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+ LPKL+ KE L AH L + +VG++G+TD VV L A+EL+K+++
Sbjct: 1 MSLPKLSTKEIAGLKQRAHHLHAVV---MVGQNGLTDAVVRETDANLTAHELIKVQVAGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E V + L EA G+ +V IG+ ++++RP
Sbjct: 58 DRQERIAVAEALCEAVGALLVQHIGKQLVLWRP 90
>gi|357638109|ref|ZP_09135982.1| RNA-binding protein, YhbY family [Streptococcus urinalis 2285-97]
gi|418417148|ref|ZP_12990346.1| hypothetical protein HMPREF9318_01094 [Streptococcus urinalis
FB127-CNA-2]
gi|357586563|gb|EHJ55971.1| RNA-binding protein, YhbY family [Streptococcus urinalis 2285-97]
gi|410873204|gb|EKS21140.1| hypothetical protein HMPREF9318_01094 [Streptococcus urinalis
FB127-CNA-2]
Length = 103
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH L ++ +GK+G+ D + TS + L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHHLKPIVQ---IGKNGLNDQIKTSIRQALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE GS V +IG+ +I+Y+ S
Sbjct: 59 HEVAEILEEEIGSDTVLKIGRIIILYKVS 87
>gi|312110149|ref|YP_003988465.1| hypothetical protein GY4MC1_1042 [Geobacillus sp. Y4.1MC1]
gi|336234613|ref|YP_004587229.1| RNA-binding, CRM domain-containing protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|423719184|ref|ZP_17693366.1| RNA-binding, CRM domain-containing protein [Geobacillus
thermoglucosidans TNO-09.020]
gi|311215250|gb|ADP73854.1| protein of unknown function UPF0044 [Geobacillus sp. Y4.1MC1]
gi|335361468|gb|AEH47148.1| RNA-binding, CRM domain protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|383368087|gb|EID45362.1| RNA-binding, CRM domain-containing protein [Geobacillus
thermoglucosidans TNO-09.020]
Length = 97
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + ++ + LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRAKAHHLKPIFQ---VGKGGVGENMIKQIADALEARELIKVSVLQNCEEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V +QL G+ +V IG T+++Y+ S
Sbjct: 59 HVVAEQLARGAGAELVQVIGNTIVLYKES 87
>gi|50913636|ref|YP_059608.1| RNA binding protein [Streptococcus pyogenes MGAS10394]
gi|71902920|ref|YP_279723.1| RNA-binding protein [Streptococcus pyogenes MGAS6180]
gi|306827996|ref|ZP_07461263.1| RNA-binding protein [Streptococcus pyogenes ATCC 10782]
gi|50902710|gb|AAT86425.1| Hypothetical RNA binding protein [Streptococcus pyogenes MGAS10394]
gi|71802015|gb|AAX71368.1| hypothetical RNA binding protein [Streptococcus pyogenes MGAS6180]
gi|94543276|gb|ABF33324.1| hypothetical RNA binding protein [Streptococcus pyogenes MGAS10270]
gi|304429915|gb|EFM32957.1| RNA-binding protein [Streptococcus pyogenes ATCC 10782]
Length = 118
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + ++
Sbjct: 18 LTSKQRAFLKSEAHSLKPIVQ---IGKNGLNDHIKTSIRQALDARELIKVTLLQNTDEDI 74
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 75 HEVAEILEEEIGCDTVLKIGRILILYKVS 103
>gi|56963404|ref|YP_175135.1| hypothetical protein ABC1639 [Bacillus clausii KSM-K16]
gi|56909647|dbj|BAD64174.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 98
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + +H++ + VGK G+ ++ E LEA EL+KI + + C +
Sbjct: 2 LTNKQKRFLRAKSHAVQPIFQ---VGKGGINQNMIVQINEALEARELIKISVLQNCLDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V +++ T S +V IG +I+Y+PS
Sbjct: 59 HHVAEEIVNQTRSFLVQVIGNMIILYKPS 87
>gi|329117327|ref|ZP_08246044.1| RNA-binding protein, YhbY family [Streptococcus parauberis NCFD
2020]
gi|326907732|gb|EGE54646.1| RNA-binding protein, YhbY family [Streptococcus parauberis NCFD
2020]
gi|456370288|gb|EMF49184.1| RNA binding protein [Streptococcus parauberis KRS-02109]
gi|457096139|gb|EMG26610.1| RNA binding protein [Streptococcus parauberis KRS-02083]
Length = 103
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ + + TS + L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHSLKPIVQ---IGKNGLNNQIKTSIRQALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV + LEE G V +IG+ +I+Y+ S
Sbjct: 59 HDVAETLEEEIGCDSVLKIGRIIILYKVS 87
>gi|228993076|ref|ZP_04152999.1| hypothetical protein bpmyx0001_38130 [Bacillus pseudomycoides DSM
12442]
gi|228999126|ref|ZP_04158708.1| hypothetical protein bmyco0003_36830 [Bacillus mycoides Rock3-17]
gi|229006674|ref|ZP_04164308.1| hypothetical protein bmyco0002_35760 [Bacillus mycoides Rock1-4]
gi|228754535|gb|EEM03946.1| hypothetical protein bmyco0002_35760 [Bacillus mycoides Rock1-4]
gi|228760743|gb|EEM09707.1| hypothetical protein bmyco0003_36830 [Bacillus mycoides Rock3-17]
gi|228766724|gb|EEM15364.1| hypothetical protein bpmyx0001_38130 [Bacillus pseudomycoides DSM
12442]
Length = 96
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + +V E LEA EL K+ + + C +
Sbjct: 2 LTGKQKRFLRAKAHHLTPIFQ---VGKGGVNENMVKQIAEALEARELFKVSVLQNCEFDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + + +V IG T+++Y+ S
Sbjct: 59 REVAEELAKGARAEIVQVIGSTIVLYKES 87
>gi|421532123|ref|ZP_15978492.1| hypothetical protein M3M_03755 [Streptococcus agalactiae
STIR-CD-17]
gi|403642631|gb|EJZ03457.1| hypothetical protein M3M_03755 [Streptococcus agalactiae
STIR-CD-17]
Length = 105
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHS+ ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHSMKPIIQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
DV + LE+ G V +IG+ +I+Y+ S+
Sbjct: 59 HDVAEVLEDEIGCDTVLKIGRILILYKESV 88
>gi|418160454|ref|ZP_12797153.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17227]
gi|353822187|gb|EHE02363.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17227]
Length = 103
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHTLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV + LEE G V +IG+ +I+++ S
Sbjct: 60 HDVAEILEEEIGVDTVQKIGRILILFKQS 88
>gi|347548872|ref|YP_004855200.1| hypothetical protein LIV_1445 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346981943|emb|CBW85928.1| Putative unknown protein [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 96
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT +K+ L AH++ + VGK V+ ++ E LEA EL+KI I + C +
Sbjct: 2 LTATQKRFLRKEAHNIQPIFQ---VGKGSVSPNLIIQVKEALEARELIKISILQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
+ V +++ TG+ +V IG+T+I+Y+ S+ + ++
Sbjct: 59 QTVAEKISSRTGADIVQVIGRTIILYKTSVNKQQI 93
>gi|375084589|ref|ZP_09731451.1| YhbY family putative RNA-binding protein [Megamonas funiformis YIT
11815]
gi|374567978|gb|EHR39174.1| YhbY family putative RNA-binding protein [Megamonas funiformis YIT
11815]
Length = 101
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ + SLG L+ + +GK G+T VV S E +E EL+K+++ + CP +
Sbjct: 6 LTGKQKR----FLRSLGMTLEPIVPIGKEGITPAVVNSADEAIEKRELIKVRVLQNCPED 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
+E + L E T +V IG+ +++R + + K+E
Sbjct: 62 IEVAITTLAERTNCDLVQVIGRNGLLWRRNFKKPKIE 98
>gi|187477432|ref|YP_785456.1| hypothetical protein BAV0929 [Bordetella avium 197N]
gi|115422018|emb|CAJ48540.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 197
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P+ +LT +E+ +L S AH L + L+G +G+TD V+ L A+EL+K++
Sbjct: 1 MPILELTSRERSDLRSAAHPLKPVV---LIGDAGLTDAVLKEIDRALNAHELIKVRAGGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E+++ + + A V +G+T+I++RPS
Sbjct: 58 DRDTREELLASICDTLSCAPVHHLGKTLILFRPS 91
>gi|125717437|ref|YP_001034570.1| hypothetical protein SSA_0577 [Streptococcus sanguinis SK36]
gi|157150382|ref|YP_001449762.1| hypothetical protein SGO_0446 [Streptococcus gordonii str. Challis
substr. CH1]
gi|323353253|ref|ZP_08087786.1| RNA-binding protein [Streptococcus sanguinis VMC66]
gi|339640626|ref|ZP_08662070.1| RNA-binding protein, YhbY family [Streptococcus sp. oral taxon 056
str. F0418]
gi|401682319|ref|ZP_10814213.1| RNA-binding protein, YhbY family [Streptococcus sp. AS14]
gi|422824157|ref|ZP_16872345.1| RNA-binding protein [Streptococcus sanguinis SK405]
gi|422825770|ref|ZP_16873949.1| RNA-binding protein [Streptococcus sanguinis SK678]
gi|422846087|ref|ZP_16892770.1| RNA-binding protein [Streptococcus sanguinis SK72]
gi|422849254|ref|ZP_16895930.1| RNA-binding protein [Streptococcus sanguinis SK115]
gi|422852210|ref|ZP_16898880.1| RNA-binding protein [Streptococcus sanguinis SK150]
gi|422853682|ref|ZP_16900346.1| RNA-binding protein [Streptococcus sanguinis SK160]
gi|422856094|ref|ZP_16902752.1| RNA-binding protein [Streptococcus sanguinis SK1]
gi|422859066|ref|ZP_16905716.1| RNA-binding protein [Streptococcus sanguinis SK1057]
gi|422860727|ref|ZP_16907371.1| RNA-binding protein [Streptococcus sanguinis SK330]
gi|422863177|ref|ZP_16909809.1| RNA-binding protein [Streptococcus sanguinis SK408]
gi|422866064|ref|ZP_16912689.1| RNA-binding protein [Streptococcus sanguinis SK1058]
gi|422871489|ref|ZP_16917982.1| RNA-binding protein [Streptococcus sanguinis SK1087]
gi|422877038|ref|ZP_16923508.1| RNA-binding protein [Streptococcus sanguinis SK1056]
gi|422879448|ref|ZP_16925914.1| RNA-binding protein [Streptococcus sanguinis SK1059]
gi|422881688|ref|ZP_16928144.1| RNA-binding protein [Streptococcus sanguinis SK355]
gi|422883435|ref|ZP_16929884.1| RNA-binding protein [Streptococcus sanguinis SK49]
gi|422929293|ref|ZP_16962235.1| RNA-binding protein [Streptococcus sanguinis ATCC 29667]
gi|422932264|ref|ZP_16965195.1| RNA-binding protein [Streptococcus sanguinis SK340]
gi|125497354|gb|ABN44020.1| Ancient RNA-binding IF3-C fold (CRS1/YhbY domain), putative
[Streptococcus sanguinis SK36]
gi|157075176|gb|ABV09859.1| conserved hypothetical protein TIGR00253 [Streptococcus gordonii
str. Challis substr. CH1]
gi|322121199|gb|EFX92962.1| RNA-binding protein [Streptococcus sanguinis VMC66]
gi|324993484|gb|EGC25404.1| RNA-binding protein [Streptococcus sanguinis SK405]
gi|324995206|gb|EGC27118.1| RNA-binding protein [Streptococcus sanguinis SK678]
gi|325688138|gb|EGD30157.1| RNA-binding protein [Streptococcus sanguinis SK72]
gi|325690275|gb|EGD32279.1| RNA-binding protein [Streptococcus sanguinis SK115]
gi|325693536|gb|EGD35455.1| RNA-binding protein [Streptococcus sanguinis SK150]
gi|325696993|gb|EGD38880.1| RNA-binding protein [Streptococcus sanguinis SK160]
gi|327458846|gb|EGF05194.1| RNA-binding protein [Streptococcus sanguinis SK1057]
gi|327461755|gb|EGF08086.1| RNA-binding protein [Streptococcus sanguinis SK1]
gi|327469110|gb|EGF14582.1| RNA-binding protein [Streptococcus sanguinis SK330]
gi|327473477|gb|EGF18897.1| RNA-binding protein [Streptococcus sanguinis SK408]
gi|327489040|gb|EGF20835.1| RNA-binding protein [Streptococcus sanguinis SK1058]
gi|328945657|gb|EGG39808.1| RNA-binding protein [Streptococcus sanguinis SK1087]
gi|332360511|gb|EGJ38321.1| RNA-binding protein [Streptococcus sanguinis SK1056]
gi|332363373|gb|EGJ41158.1| RNA-binding protein [Streptococcus sanguinis SK49]
gi|332363930|gb|EGJ41709.1| RNA-binding protein [Streptococcus sanguinis SK355]
gi|332366160|gb|EGJ43916.1| RNA-binding protein [Streptococcus sanguinis SK1059]
gi|339453895|gb|EGP66510.1| RNA-binding protein, YhbY family [Streptococcus sp. oral taxon 056
str. F0418]
gi|339615109|gb|EGQ19792.1| RNA-binding protein [Streptococcus sanguinis ATCC 29667]
gi|339619048|gb|EGQ23638.1| RNA-binding protein [Streptococcus sanguinis SK340]
gi|400184755|gb|EJO18993.1| RNA-binding protein, YhbY family [Streptococcus sp. AS14]
Length = 103
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILYKQS 88
>gi|392429163|ref|YP_006470174.1| ancient RNA-binding IF3-C fold protein [Streptococcus intermedius
JTH08]
gi|419776147|ref|ZP_14302070.1| RNA-binding protein, YhbY family [Streptococcus intermedius SK54]
gi|423071277|ref|ZP_17060052.1| hypothetical protein HMPREF9177_01369 [Streptococcus intermedius
F0413]
gi|424788333|ref|ZP_18215088.1| CRS1 / YhbY domain protein [Streptococcus intermedius BA1]
gi|355364639|gb|EHG12371.1| hypothetical protein HMPREF9177_01369 [Streptococcus intermedius
F0413]
gi|383846355|gb|EID83754.1| RNA-binding protein, YhbY family [Streptococcus intermedius SK54]
gi|391758309|dbj|BAM23926.1| ancient RNA-binding IF3-C fold protein homolog [Streptococcus
intermedius JTH08]
gi|422112836|gb|EKU16598.1| CRS1 / YhbY domain protein [Streptococcus intermedius BA1]
Length = 103
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRSFLNSQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILYKQS 88
>gi|322386053|ref|ZP_08059692.1| RNA-binding protein [Streptococcus cristatus ATCC 51100]
gi|417922401|ref|ZP_12565889.1| RNA-binding protein, YhbY family [Streptococcus cristatus ATCC
51100]
gi|321269897|gb|EFX52818.1| RNA-binding protein [Streptococcus cristatus ATCC 51100]
gi|342832498|gb|EGU66793.1| RNA-binding protein, YhbY family [Streptococcus cristatus ATCC
51100]
Length = 103
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHSLKPIVQ---IGKNGLNDQIKTSIRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILYKQS 88
>gi|22537803|ref|NP_688654.1| hypothetical protein SAG1663 [Streptococcus agalactiae 2603V/R]
gi|25011747|ref|NP_736142.1| hypothetical protein gbs1707 [Streptococcus agalactiae NEM316]
gi|76788008|ref|YP_330277.1| hypothetical protein SAK_1675 [Streptococcus agalactiae A909]
gi|77406578|ref|ZP_00783626.1| conserved hypothetical protein TIGR00253 [Streptococcus agalactiae
H36B]
gi|77408288|ref|ZP_00785031.1| conserved hypothetical protein TIGR00253 [Streptococcus agalactiae
COH1]
gi|77411909|ref|ZP_00788241.1| conserved hypothetical protein TIGR00253 [Streptococcus agalactiae
CJB111]
gi|77414352|ref|ZP_00790508.1| conserved hypothetical protein TIGR00253 [Streptococcus agalactiae
515]
gi|339300939|ref|ZP_08650064.1| RNA-binding protein [Streptococcus agalactiae ATCC 13813]
gi|406710042|ref|YP_006764768.1| RNA-binding protein [Streptococcus agalactiae GD201008-001]
gi|417006044|ref|ZP_11944614.1| RNA-binding protein [Streptococcus agalactiae FSL S3-026]
gi|421148018|ref|ZP_15607690.1| hypothetical protein GB112_09145 [Streptococcus agalactiae GB00112]
gi|424048893|ref|ZP_17786444.1| hypothetical protein WY5_02355 [Streptococcus agalactiae ZQ0910]
gi|22534696|gb|AAN00527.1|AE014267_10 conserved hypothetical protein TIGR00253 [Streptococcus agalactiae
2603V/R]
gi|24413287|emb|CAD47366.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563065|gb|ABA45649.1| conserved hypothetical protein TIGR00253 [Streptococcus agalactiae
A909]
gi|77159587|gb|EAO70742.1| conserved hypothetical protein TIGR00253 [Streptococcus agalactiae
515]
gi|77162069|gb|EAO73048.1| conserved hypothetical protein TIGR00253 [Streptococcus agalactiae
CJB111]
gi|77173146|gb|EAO76272.1| conserved hypothetical protein TIGR00253 [Streptococcus agalactiae
COH1]
gi|77174803|gb|EAO77624.1| conserved hypothetical protein TIGR00253 [Streptococcus agalactiae
H36B]
gi|319745587|gb|EFV97888.1| RNA-binding protein [Streptococcus agalactiae ATCC 13813]
gi|341576225|gb|EGS26636.1| RNA-binding protein [Streptococcus agalactiae FSL S3-026]
gi|389649662|gb|EIM71138.1| hypothetical protein WY5_02355 [Streptococcus agalactiae ZQ0910]
gi|401685356|gb|EJS81364.1| hypothetical protein GB112_09145 [Streptococcus agalactiae GB00112]
gi|406650927|gb|AFS46328.1| RNA-binding protein [Streptococcus agalactiae GD201008-001]
Length = 105
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHS+ ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHSMKPIIQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HDVAEVLEDEIGCDTVLKIGRILILYKES 87
>gi|229031984|ref|ZP_04187969.1| hypothetical protein bcere0028_40290 [Bacillus cereus AH1271]
gi|228729339|gb|EEL80331.1| hypothetical protein bcere0028_40290 [Bacillus cereus AH1271]
Length = 97
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + ++ +TLE EL K+ + + C +
Sbjct: 2 LTGKQKRFLRAQAHHLTPIFQ---VGKGGVNENMIKQIADTLEVRELFKVSVLQNCEFDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + + +V IG T+++Y+ S
Sbjct: 59 REVAEELAQGARAEIVQVIGSTIVLYKES 87
>gi|345020326|ref|ZP_08783939.1| putative RNA-binding protein [Ornithinibacillus scapharcae TW25]
Length = 96
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + ++ E LE EL+K+ I + C +
Sbjct: 2 LTGKQKRFLRSKAHHLKPIFQ---VGKIGVNENMIVQVNEALEKRELIKVSILQNCMDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQ 128
E V ++L+ T + +V IG +++Y+ S EE KQ
Sbjct: 59 ETVAEELKAGTKAEIVQVIGNNIVLYKES------EENKQ 92
>gi|410494095|ref|YP_006903941.1| CRS2-associated factor 1 [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417926892|ref|ZP_12570280.1| RNA-binding protein, YhbY family [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|340764766|gb|EGR87292.1| RNA-binding protein, YhbY family [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|410439255|emb|CCI61883.1| CRS2-associated factor 1, chloroplastic [Streptococcus dysgalactiae
subsp. equisimilis AC-2713]
Length = 102
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHSLKPIIQ---IGKNGLNDHIKTSIRQALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 59 HEVAEILEEEIGCDTVLKIGRILILYKVS 87
>gi|410595039|ref|YP_006951766.1| RNA-binding protein YqeI [Streptococcus agalactiae SA20-06]
gi|410518678|gb|AFV72822.1| RNA-binding protein YqeI [Streptococcus agalactiae SA20-06]
Length = 105
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHS+ ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHSMKPIIQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
DV + LE+ G V +IG+ +I+Y+ S+
Sbjct: 59 HDVAEVLEDEIGCDTVLKIGRLLILYKESV 88
>gi|418965888|ref|ZP_13517646.1| RNA-binding protein, YhbY family [Streptococcus constellatus subsp.
constellatus SK53]
gi|383341522|gb|EID19781.1| RNA-binding protein, YhbY family [Streptococcus constellatus subsp.
constellatus SK53]
Length = 103
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILYKQS 88
>gi|343525455|ref|ZP_08762410.1| RNA-binding protein, YhbY family [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|421489740|ref|ZP_15937116.1| RNA-binding protein, YhbY family [Streptococcus anginosus SK1138]
gi|423069215|ref|ZP_17058002.1| hypothetical protein HMPREF9682_01223 [Streptococcus intermedius
F0395]
gi|343395725|gb|EGV08263.1| RNA-binding protein, YhbY family [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|355365103|gb|EHG12829.1| hypothetical protein HMPREF9682_01223 [Streptococcus intermedius
F0395]
gi|400374328|gb|EJP27247.1| RNA-binding protein, YhbY family [Streptococcus anginosus SK1138]
Length = 103
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILYKQS 88
>gi|379795953|ref|YP_005325951.1| RNA binding protein [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872943|emb|CCE59282.1| RNA binding protein [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 96
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ +TLE EL+K+ + + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQ---IGKGGINENMIQQIDDTLENRELIKVHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + L EAT S +V IG ++IYR S
Sbjct: 59 KELAQTLSEATHSELVQVIGSMIVIYRES 87
>gi|319946394|ref|ZP_08020631.1| RNA-binding protein [Streptococcus australis ATCC 700641]
gi|414157032|ref|ZP_11413332.1| hypothetical protein HMPREF9186_01752 [Streptococcus sp. F0442]
gi|417919909|ref|ZP_12563430.1| RNA-binding protein, YhbY family [Streptococcus australis ATCC
700641]
gi|319747362|gb|EFV99618.1| RNA-binding protein [Streptococcus australis ATCC 700641]
gi|342831465|gb|EGU65781.1| RNA-binding protein, YhbY family [Streptococcus australis ATCC
700641]
gi|410868348|gb|EKS16313.1| hypothetical protein HMPREF9186_01752 [Streptococcus sp. F0442]
Length = 103
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILYKQS 88
>gi|392427427|ref|YP_006468421.1| putative RNA-binding protein, YhbY family [Desulfosporosinus
acidiphilus SJ4]
gi|391357390|gb|AFM43089.1| putative RNA-binding protein, YhbY family [Desulfosporosinus
acidiphilus SJ4]
Length = 97
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K Y ++G ++ L VGK G+ + VVT + LEA EL+K ++ + C E
Sbjct: 2 LTGKQK----CYLRAMGNEMDPILQVGKGGIAEAVVTQTNDALEARELIKGRVLQNCLEE 57
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ V L E T S +V IG+ ++YRPS
Sbjct: 58 PKSVAADLAEQTRSELVQVIGRNFLLYRPS 87
>gi|319892652|ref|YP_004149527.1| RNA binding protein [Staphylococcus pseudintermedius HKU10-03]
gi|386319139|ref|YP_006015302.1| hypothetical protein SPSE_1194 [Staphylococcus pseudintermedius
ED99]
gi|317162348|gb|ADV05891.1| RNA binding protein [Staphylococcus pseudintermedius HKU10-03]
gi|323464310|gb|ADX76463.1| conserved hypothetical protein [Staphylococcus pseudintermedius
ED99]
Length = 97
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH + + +GKSG+ + +V ETLE EL+KI I + +
Sbjct: 3 LTGKQKRFLRSKAHHVDPTFQ---IGKSGINENMVEQLKETLENRELIKIHILQNNMDDK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + + +AT S +V IG +++Y+ S
Sbjct: 60 SELAQNISQATDSELVQLIGSMIVLYKES 88
>gi|386729296|ref|YP_006195679.1| RNA binding protein (CRS1/YhbY family) [Staphylococcus aureus
subsp. aureus 71193]
gi|384230589|gb|AFH69836.1| RNA binding protein (CRS1/YhbY family) [Staphylococcus aureus
subsp. aureus 71193]
Length = 96
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ +TLE EL+KI + + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQ---IGKGGINENMIKQIDDTLENRELIKIHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + L EAT S +V IG ++IYR S
Sbjct: 59 KELAETLSEATRSELVQVIGSMIVIYRES 87
>gi|296134010|ref|YP_003641257.1| hypothetical protein TherJR_2519 [Thermincola potens JR]
gi|296032588|gb|ADG83356.1| protein of unknown function UPF0044 [Thermincola potens JR]
Length = 104
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK + V+ + LEA EL+KI++ C E++ + +++ AT + ++ IG ++
Sbjct: 30 IGKGALAPNVIKQIDDALEARELIKIRVLNNCAEEIDRIAERVASATDAHLIQLIGHVIL 89
Query: 113 IYRPSLTRMKLE 124
+YRPS T+ ++E
Sbjct: 90 LYRPSKTKPQIE 101
>gi|310818946|ref|YP_003951304.1| hypothetical protein STAUR_1673 [Stigmatella aurantiaca DW4/3-1]
gi|309392018|gb|ADO69477.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 96
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K+++ L + H L + +VG+SGVT+GV+ + + L +EL+K+KI+ PG
Sbjct: 3 LNGKQRRALRAVGHHLEPVV---IVGQSGVTEGVLGAITQALNDHELIKVKINE-GPGTR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ L E TGS +V +G+TV++++
Sbjct: 59 QEAATSLAEGTGSELVQLLGRTVLLFK 85
>gi|335029149|ref|ZP_08522661.1| RNA-binding protein, YhbY family [Streptococcus infantis SK1076]
gi|334269550|gb|EGL87967.1| RNA-binding protein, YhbY family [Streptococcus infantis SK1076]
Length = 103
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHTLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
+V + LEE G V +IG+ +I+Y+ S+
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILYKQSI 89
>gi|310827277|ref|YP_003959634.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308739011|gb|ADO36671.1| hypothetical protein ELI_1685 [Eubacterium limosum KIST612]
Length = 109
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
+GK G+T V+ + + A EL+K KI + E+ED ++L EAT S +V IG
Sbjct: 22 FIGKDGITPEVIQQTRDAIVARELIKGKIQQNSMEEVEDAARKLAEATRSEIVCTIGNKF 81
Query: 112 IIYRPSLTRMKLE 124
I+Y+ +L + K+E
Sbjct: 82 ILYKKNLLKTKIE 94
>gi|374603052|ref|ZP_09676037.1| dihydrodipicolinate reductase [Paenibacillus dendritiformis C454]
gi|374391365|gb|EHQ62702.1| dihydrodipicolinate reductase [Paenibacillus dendritiformis C454]
Length = 96
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH + + VGK G D ++ E LE EL+K+ I C +
Sbjct: 2 LTGKQKRYLRSLAHHVQPIFQ---VGKGGTNDQLIRHIEEALEVRELIKVSILNNCMDDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
+V ++L +G+ +V IG+T+++Y+ S ++E
Sbjct: 59 FEVAEELASRSGAELVQVIGKTIVLYKESAEHKQIE 94
>gi|445059506|ref|YP_007384910.1| RNA binding protein [Staphylococcus warneri SG1]
gi|443425563|gb|AGC90466.1| RNA binding protein [Staphylococcus warneri SG1]
Length = 96
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH+ + +GK G+ + +V ETLE EL+KI + + +
Sbjct: 2 LTGKQKRYLRSLAHNTDPTFQ---IGKGGINENMVNQIDETLEKRELIKIHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ L EAT +V IG +++YR S
Sbjct: 59 NELATTLSEATNCEIVQVIGSMIVLYRES 87
>gi|15674474|ref|NP_268648.1| hypothetical protein SPy_0307 [Streptococcus pyogenes SF370]
gi|19745429|ref|NP_606565.1| hypothetical protein spyM18_0303 [Streptococcus pyogenes MGAS8232]
gi|21909761|ref|NP_664029.1| hypothetical protein SpyM3_0225 [Streptococcus pyogenes MGAS315]
gi|28896547|ref|NP_802897.1| hypothetical protein SPs1635 [Streptococcus pyogenes SSI-1]
gi|56808382|ref|ZP_00366136.1| COG1534: Predicted RNA-binding protein containing KH domain,
possibly ribosomal protein [Streptococcus pyogenes M49
591]
gi|71910076|ref|YP_281626.1| RNA-binding protein [Streptococcus pyogenes MGAS5005]
gi|94987892|ref|YP_595993.1| RNA-binding protein [Streptococcus pyogenes MGAS9429]
gi|94991777|ref|YP_599876.1| RNA-binding protein [Streptococcus pyogenes MGAS2096]
gi|94993652|ref|YP_601750.1| RNA-binding protein [Streptococcus pyogenes MGAS10750]
gi|139474399|ref|YP_001129115.1| hypothetical protein SpyM51592 [Streptococcus pyogenes str.
Manfredo]
gi|209558821|ref|YP_002285293.1| hypothetical protein Spy49_0259 [Streptococcus pyogenes NZ131]
gi|383479448|ref|YP_005388342.1| RNA binding protein [Streptococcus pyogenes MGAS15252]
gi|383493372|ref|YP_005411048.1| RNA binding protein [Streptococcus pyogenes MGAS1882]
gi|386316308|ref|YP_006012472.1| RNA-binding protein [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|386362127|ref|YP_006071458.1| hypothetical protein SPYALAB49_000295 [Streptococcus pyogenes
Alab49]
gi|410679950|ref|YP_006932352.1| hypothetical protein A20_0312 [Streptococcus pyogenes A20]
gi|417752126|ref|ZP_12400357.1| RNA-binding protein, YhbY family [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|417857510|ref|ZP_12502569.1| RNA-binding protein [Streptococcus pyogenes HKU QMH11M0907901]
gi|421891704|ref|ZP_16322472.1| FIG004454: RNA binding protein [Streptococcus pyogenes NS88.2]
gi|422758293|ref|ZP_16812055.1| RNA-binding protein [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|13621573|gb|AAK33369.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|19747541|gb|AAL97064.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|21903946|gb|AAM78832.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28811801|dbj|BAC64730.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|71852858|gb|AAZ50881.1| hypothetical RNA binding protein [Streptococcus pyogenes MGAS5005]
gi|94541400|gb|ABF31449.1| hypothetical RNA binding protein [Streptococcus pyogenes MGAS9429]
gi|94545285|gb|ABF35332.1| hypothetical RNA binding protein [Streptococcus pyogenes MGAS2096]
gi|94547160|gb|ABF37206.1| hypothetical RNA binding protein [Streptococcus pyogenes MGAS10750]
gi|134272646|emb|CAM30913.1| conserved hypothetical protein [Streptococcus pyogenes str.
Manfredo]
gi|209540022|gb|ACI60598.1| hypothetical protein Spy49_0259 [Streptococcus pyogenes NZ131]
gi|322411128|gb|EFY02036.1| RNA-binding protein [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|323126595|gb|ADX23892.1| RNA-binding protein [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|333772084|gb|EGL48966.1| RNA-binding protein, YhbY family [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|350276536|gb|AEQ23904.1| hypothetical protein SPYALAB49_000295 [Streptococcus pyogenes
Alab49]
gi|378927438|gb|AFC65644.1| RNA binding protein [Streptococcus pyogenes MGAS15252]
gi|378929100|gb|AFC67517.1| RNA binding protein [Streptococcus pyogenes MGAS1882]
gi|379982528|emb|CCG26194.1| FIG004454: RNA binding protein [Streptococcus pyogenes NS88.2]
gi|387934465|gb|EIK42578.1| RNA-binding protein [Streptococcus pyogenes HKU QMH11M0907901]
gi|395453321|dbj|BAM29660.1| RNA-binding protein [Streptococcus pyogenes M1 476]
gi|409692539|gb|AFV37399.1| hypothetical protein A20_0312 [Streptococcus pyogenes A20]
Length = 102
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHSLKPIVQ---IGKNGLNDHIKTSIRQALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 59 HEVAEILEEEIGCDTVLKIGRILILYKVS 87
>gi|387887740|ref|YP_006318038.1| putative RNA-binding protein [Escherichia blattae DSM 4481]
gi|414594241|ref|ZP_11443880.1| RNA-binding protein YhbY [Escherichia blattae NBRC 105725]
gi|386922573|gb|AFJ45527.1| putative RNA-binding protein [Escherichia blattae DSM 4481]
gi|403194831|dbj|GAB81532.1| RNA-binding protein YhbY [Escherichia blattae NBRC 105725]
Length = 110
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AHSL + L+G +G+T+GV+ + LE +EL+K+KI
Sbjct: 15 NLSTKQKQHLKGLAHSLKPVV---LLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRET 71
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRM 121
+V+ + TG+ V IG+T+++YRP+ R+
Sbjct: 72 KTLIVEAIVRETGACNVQVIGKTLVLYRPTAERI 105
>gi|229175008|ref|ZP_04302527.1| hypothetical protein bcere0006_40910 [Bacillus cereus MM3]
gi|423400820|ref|ZP_17377993.1| hypothetical protein ICW_01218 [Bacillus cereus BAG2X1-2]
gi|423457418|ref|ZP_17434215.1| hypothetical protein IEI_00558 [Bacillus cereus BAG5X2-1]
gi|423478475|ref|ZP_17455190.1| hypothetical protein IEO_03933 [Bacillus cereus BAG6X1-1]
gi|228608469|gb|EEK65772.1| hypothetical protein bcere0006_40910 [Bacillus cereus MM3]
gi|401147802|gb|EJQ55295.1| hypothetical protein IEI_00558 [Bacillus cereus BAG5X2-1]
gi|401653810|gb|EJS71353.1| hypothetical protein ICW_01218 [Bacillus cereus BAG2X1-2]
gi|402428637|gb|EJV60734.1| hypothetical protein IEO_03933 [Bacillus cereus BAG6X1-1]
Length = 100
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + ++ +TLE EL K+ + + C +
Sbjct: 2 LTGKQKRFLRAQAHHLTPIFQ---VGKGGVNENMIKQIADTLEVRELFKVSVLQNCEFDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + + +V IG T+++Y+ S
Sbjct: 59 REVAEELAKGARAEIVQVIGSTIVLYKES 87
>gi|392957243|ref|ZP_10322767.1| hypothetical protein A374_10900 [Bacillus macauensis ZFHKF-1]
gi|391876650|gb|EIT85246.1| hypothetical protein A374_10900 [Bacillus macauensis ZFHKF-1]
Length = 96
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L S A+ L + VGK GV + +VT E LE EL+K+ I + C
Sbjct: 2 LSGKQKRFLRSMANGLQPIFQ---VGKGGVNENMVTQIAEALEVRELIKVSILQNCDENK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+DV + L + VV IG +++Y+ S
Sbjct: 59 DDVARALATGAKAQVVQVIGSVIVLYKES 87
>gi|392972263|ref|ZP_10337655.1| RNA-binding protein [Staphylococcus equorum subsp. equorum Mu2]
gi|403046412|ref|ZP_10901881.1| hypothetical protein SOJ_14900 [Staphylococcus sp. OJ82]
gi|392509976|emb|CCI60958.1| RNA-binding protein [Staphylococcus equorum subsp. equorum Mu2]
gi|402763108|gb|EJX17201.1| hypothetical protein SOJ_14900 [Staphylococcus sp. OJ82]
Length = 96
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S A+++ + +GKSG+ D +V+ + LE EL+K+ + + +
Sbjct: 2 LTGKQKRFLRSKANNVDPTFQ---IGKSGINDNMVSQINDILENRELIKVHVLQNNYEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
D+ + L +AT S VV IG +++Y+ S
Sbjct: 59 NDLAQSLSDATRSDVVQVIGSMIVLYKES 87
>gi|422821792|ref|ZP_16869985.1| RNA-binding protein [Streptococcus sanguinis SK353]
gi|324990743|gb|EGC22679.1| RNA-binding protein [Streptococcus sanguinis SK353]
Length = 103
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTYENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILYKQS 88
>gi|57651987|ref|YP_186491.1| hypothetical protein SACOL1651 [Staphylococcus aureus subsp. aureus
COL]
gi|87161797|ref|YP_494249.1| hypothetical protein SAUSA300_1554 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88195404|ref|YP_500208.1| hypothetical protein SAOUHSC_01698 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|151221709|ref|YP_001332531.1| hypothetical protein NWMN_1497 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509823|ref|YP_001575482.1| hypothetical protein USA300HOU_1596 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221141134|ref|ZP_03565627.1| hypothetical protein SauraJ_05778 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253732248|ref|ZP_04866413.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733154|ref|ZP_04867319.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|258450577|ref|ZP_05698639.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|262048594|ref|ZP_06021477.1| hypothetical protein SAD30_0990 [Staphylococcus aureus D30]
gi|262051253|ref|ZP_06023477.1| hypothetical protein SA930_1684 [Staphylococcus aureus 930918-3]
gi|282920143|ref|ZP_06327868.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|284024653|ref|ZP_06379051.1| hypothetical protein Saura13_08680 [Staphylococcus aureus subsp.
aureus 132]
gi|294848625|ref|ZP_06789371.1| hypothetical protein SKAG_00692 [Staphylococcus aureus A9754]
gi|379014803|ref|YP_005291039.1| hypothetical protein SAVC_07230 [Staphylococcus aureus subsp.
aureus VC40]
gi|384862195|ref|YP_005744915.1| RNA-binding protein YbhY [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|384870135|ref|YP_005752849.1| RNA-binding protein YbhY [Staphylococcus aureus subsp. aureus
T0131]
gi|387143200|ref|YP_005731593.1| hypothetical protein SATW20_15910 [Staphylococcus aureus subsp.
aureus TW20]
gi|415686215|ref|ZP_11450352.1| hypothetical protein CGSSa01_09309 [Staphylococcus aureus subsp.
aureus CGS01]
gi|417649266|ref|ZP_12299070.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21189]
gi|417897927|ref|ZP_12541853.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21259]
gi|418276919|ref|ZP_12891673.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21178]
gi|418285638|ref|ZP_12898306.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21209]
gi|418318445|ref|ZP_12929847.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21232]
gi|418321344|ref|ZP_12932690.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus VCU006]
gi|418571880|ref|ZP_13136100.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21283]
gi|418579519|ref|ZP_13143614.1| hypothetical protein SACIG1114_2155 [Staphylococcus aureus subsp.
aureus CIG1114]
gi|418599960|ref|ZP_13163434.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21343]
gi|418641926|ref|ZP_13204131.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-24]
gi|418645135|ref|ZP_13207263.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-55]
gi|418648372|ref|ZP_13210416.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-88]
gi|418650514|ref|ZP_13212532.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-91]
gi|418659232|ref|ZP_13220920.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-111]
gi|418873202|ref|ZP_13427512.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-125]
gi|418875534|ref|ZP_13429790.1| hypothetical protein SACIGC93_1665 [Staphylococcus aureus subsp.
aureus CIGC93]
gi|418903901|ref|ZP_13457942.1| hypothetical protein SACIG1770_2196 [Staphylococcus aureus subsp.
aureus CIG1770]
gi|418906539|ref|ZP_13460565.1| hypothetical protein SACIGC345D_2016 [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|418912205|ref|ZP_13466186.1| hypothetical protein SACIG547_2225 [Staphylococcus aureus subsp.
aureus CIG547]
gi|418925854|ref|ZP_13479756.1| hypothetical protein SACIG2018_1992 [Staphylococcus aureus subsp.
aureus CIG2018]
gi|418928944|ref|ZP_13482830.1| hypothetical protein SACIG1612_2238 [Staphylococcus aureus subsp.
aureus CIG1612]
gi|418946867|ref|ZP_13499269.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-157]
gi|418955669|ref|ZP_13507606.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-189]
gi|419773236|ref|ZP_14299247.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus CO-23]
gi|421148525|ref|ZP_15608185.1| hypothetical protein Newbould305_0284 [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422742621|ref|ZP_16796624.1| conserved hypothetical protein TIGR00253 [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422746111|ref|ZP_16800044.1| conserved hypothetical protein TIGR00253 [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424785430|ref|ZP_18212233.1| RNA binding protein [Staphylococcus aureus CN79]
gi|440707235|ref|ZP_20887934.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21282]
gi|440735045|ref|ZP_20914656.1| hypothetical protein SASA_10540 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443640009|ref|ZP_21124009.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21196]
gi|57286173|gb|AAW38267.1| conserved hypothetical protein TIGR00253 [Staphylococcus aureus
subsp. aureus COL]
gi|87127771|gb|ABD22285.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202962|gb|ABD30772.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|150374509|dbj|BAF67769.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368632|gb|ABX29603.1| hypothetical protein USA300HOU_1596 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253724037|gb|EES92766.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728910|gb|EES97639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|257861735|gb|EEV84534.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|259160890|gb|EEW45910.1| hypothetical protein SA930_1684 [Staphylococcus aureus 930918-3]
gi|259163241|gb|EEW47800.1| hypothetical protein SAD30_0990 [Staphylococcus aureus D30]
gi|269941083|emb|CBI49468.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282594491|gb|EFB99476.1| conserved hypothetical protein [Staphylococcus aureus A9765]
gi|294824651|gb|EFG41074.1| hypothetical protein SKAG_00692 [Staphylococcus aureus A9754]
gi|302751424|gb|ADL65601.1| RNA-binding protein YbhY [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|315198708|gb|EFU29036.1| hypothetical protein CGSSa01_09309 [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140519|gb|EFW32373.1| conserved hypothetical protein TIGR00253 [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144057|gb|EFW35826.1| conserved hypothetical protein TIGR00253 [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329314270|gb|AEB88683.1| RNA-binding protein YbhY [Staphylococcus aureus subsp. aureus
T0131]
gi|329728372|gb|EGG64809.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21189]
gi|341849429|gb|EGS90572.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21259]
gi|365169448|gb|EHM60696.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21209]
gi|365173902|gb|EHM64331.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21178]
gi|365225576|gb|EHM66819.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus VCU006]
gi|365242908|gb|EHM83603.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21232]
gi|371978372|gb|EHO95621.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21283]
gi|374363500|gb|AEZ37605.1| hypothetical protein SAVC_07230 [Staphylococcus aureus subsp.
aureus VC40]
gi|374395549|gb|EHQ66812.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21343]
gi|375018381|gb|EHS11961.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-24]
gi|375023968|gb|EHS17413.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-55]
gi|375026285|gb|EHS19668.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-88]
gi|375027800|gb|EHS21158.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-91]
gi|375036230|gb|EHS29308.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-111]
gi|375366393|gb|EHS70390.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-125]
gi|375370755|gb|EHS74553.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-189]
gi|375377269|gb|EHS80752.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-157]
gi|377697546|gb|EHT21901.1| hypothetical protein SACIG1114_2155 [Staphylococcus aureus subsp.
aureus CIG1114]
gi|377722462|gb|EHT46588.1| hypothetical protein SACIG547_2225 [Staphylococcus aureus subsp.
aureus CIG547]
gi|377738856|gb|EHT62865.1| hypothetical protein SACIG1612_2238 [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377742916|gb|EHT66901.1| hypothetical protein SACIG1770_2196 [Staphylococcus aureus subsp.
aureus CIG1770]
gi|377744923|gb|EHT68900.1| hypothetical protein SACIG2018_1992 [Staphylococcus aureus subsp.
aureus CIG2018]
gi|377763444|gb|EHT87300.1| hypothetical protein SACIGC345D_2016 [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|377769606|gb|EHT93374.1| hypothetical protein SACIGC93_1665 [Staphylococcus aureus subsp.
aureus CIGC93]
gi|383973060|gb|EID89081.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus CO-23]
gi|394331668|gb|EJE57751.1| hypothetical protein Newbould305_0284 [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|421956840|gb|EKU09169.1| RNA binding protein [Staphylococcus aureus CN79]
gi|436431140|gb|ELP28494.1| hypothetical protein SASA_10540 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436505991|gb|ELP41830.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21282]
gi|443406284|gb|ELS64868.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21196]
Length = 96
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ +TLE EL+K+ + + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQ---IGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + L EAT S +V IG ++IYR S
Sbjct: 59 KELAETLSEATHSELVQVIGSMIVIYRES 87
>gi|390453030|ref|ZP_10238558.1| dihydrodipicolinate reductase [Paenibacillus peoriae KCTC 3763]
Length = 98
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK+G + ++ + +E EL+K++I C +
Sbjct: 2 LTGKQKRYLRSMAHHLDPVFQ---VGKNGTNEHLMRHINDAIEKRELMKVQILNNCLDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++ ++L T S +V IG T+I+Y+ S ++E
Sbjct: 59 HEIAEELAAETDSELVQIIGSTIILYKESRDHKQIE 94
>gi|389571865|ref|ZP_10161953.1| hypothetical protein BAME_05220 [Bacillus sp. M 2-6]
gi|407978441|ref|ZP_11159272.1| RNA binding protein [Bacillus sp. HYC-10]
gi|388428351|gb|EIL86148.1| hypothetical protein BAME_05220 [Bacillus sp. M 2-6]
gi|407414999|gb|EKF36615.1| RNA binding protein [Bacillus sp. HYC-10]
Length = 96
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L + AH L + VGK GV D +V E LEA ELLK+ + + C + +V
Sbjct: 5 KQKRFLRAQAHHLSPIFQ---VGKGGVNDNMVKQISEALEARELLKVSVLQNCDEDKTEV 61
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
K L + + +V IG +++Y+ S
Sbjct: 62 AKALVKGAKAELVQTIGNVIVLYKES 87
>gi|49483842|ref|YP_041066.1| hypothetical protein SAR1672 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257425719|ref|ZP_05602143.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428380|ref|ZP_05604778.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431017|ref|ZP_05607397.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433705|ref|ZP_05610063.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257436619|ref|ZP_05612663.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282904176|ref|ZP_06312064.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus C160]
gi|282906003|ref|ZP_06313858.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908914|ref|ZP_06316732.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911232|ref|ZP_06319034.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914401|ref|ZP_06322187.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus M899]
gi|282919370|ref|ZP_06327105.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282924695|ref|ZP_06332363.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|283958358|ref|ZP_06375809.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293503475|ref|ZP_06667322.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|293510492|ref|ZP_06669198.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M809]
gi|293531032|ref|ZP_06671714.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus M1015]
gi|295428172|ref|ZP_06820804.1| hypothetical protein SIAG_00700 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590862|ref|ZP_06949500.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MN8]
gi|415682397|ref|ZP_11447713.1| hypothetical protein CGSSa00_07500 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887983|ref|ZP_12532102.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21195]
gi|418564602|ref|ZP_13129023.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21264]
gi|418582521|ref|ZP_13146599.1| hypothetical protein SACIG1605_2417 [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418597225|ref|ZP_13160758.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21342]
gi|418601006|ref|ZP_13164454.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21345]
gi|418892324|ref|ZP_13446437.1| hypothetical protein SACIG1176_2403 [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418898229|ref|ZP_13452299.1| hypothetical protein SACIGC341D_2430 [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418901099|ref|ZP_13455155.1| hypothetical protein SACIG1214_2348 [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418909446|ref|ZP_13463442.1| hypothetical protein SACIG149_2317 [Staphylococcus aureus subsp.
aureus CIG149]
gi|418917492|ref|ZP_13471451.1| hypothetical protein SACIG1267_2209 [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418923276|ref|ZP_13477192.1| hypothetical protein SACIG1233_2260 [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418982600|ref|ZP_13530308.1| hypothetical protein SACIG1242_1648 [Staphylococcus aureus subsp.
aureus CIG1242]
gi|418986266|ref|ZP_13533951.1| hypothetical protein SACIG1500_2338 [Staphylococcus aureus subsp.
aureus CIG1500]
gi|49241971|emb|CAG40666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271413|gb|EEV03559.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275221|gb|EEV06708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278447|gb|EEV09083.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281798|gb|EEV11935.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257283970|gb|EEV14093.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313530|gb|EFB43925.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|282317180|gb|EFB47554.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282321582|gb|EFB51907.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus M899]
gi|282324927|gb|EFB55237.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282327178|gb|EFB57473.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331295|gb|EFB60809.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595794|gb|EFC00758.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus C160]
gi|283790507|gb|EFC29324.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290920300|gb|EFD97366.1| probable RNA-binding protein YqeI [Staphylococcus aureus subsp.
aureus M1015]
gi|291095141|gb|EFE25406.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|291466856|gb|EFF09376.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M809]
gi|295128530|gb|EFG58164.1| hypothetical protein SIAG_00700 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297575748|gb|EFH94464.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MN8]
gi|315195497|gb|EFU25884.1| hypothetical protein CGSSa00_07500 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341857012|gb|EGS97839.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21195]
gi|371975739|gb|EHO93031.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21264]
gi|374395461|gb|EHQ66728.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21342]
gi|374400253|gb|EHQ71372.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21345]
gi|377702496|gb|EHT26818.1| hypothetical protein SACIG1214_2348 [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377704310|gb|EHT28620.1| hypothetical protein SACIG1500_2338 [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377704881|gb|EHT29190.1| hypothetical protein SACIG1242_1648 [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377710931|gb|EHT35169.1| hypothetical protein SACIG1605_2417 [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377730618|gb|EHT54685.1| hypothetical protein SACIG1176_2403 [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377735235|gb|EHT59271.1| hypothetical protein SACIG1233_2260 [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377750666|gb|EHT74604.1| hypothetical protein SACIG1267_2209 [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377752093|gb|EHT76017.1| hypothetical protein SACIG149_2317 [Staphylococcus aureus subsp.
aureus CIG149]
gi|377761264|gb|EHT85140.1| hypothetical protein SACIGC341D_2430 [Staphylococcus aureus subsp.
aureus CIGC341D]
Length = 96
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ +TLE EL+K+ + + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQ---IGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + L EAT S +V IG ++IYR S
Sbjct: 59 KELAETLSEATHSELVQVIGSMIVIYRES 87
>gi|261405560|ref|YP_003241801.1| hypothetical protein GYMC10_1711 [Paenibacillus sp. Y412MC10]
gi|329925899|ref|ZP_08280609.1| RNA-binding protein, YhbY family [Paenibacillus sp. HGF5]
gi|261282023|gb|ACX63994.1| protein of unknown function UPF0044 [Paenibacillus sp. Y412MC10]
gi|328939550|gb|EGG35899.1| RNA-binding protein, YhbY family [Paenibacillus sp. HGF5]
Length = 96
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK G + ++ E +E EL+K+ + C +
Sbjct: 2 LTGKQKRHLRSLAHHLDPLFQ---VGKGGSNEHLIRHISEAIEKRELMKVSVLNNCLEDP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ ++L E G+ +V IG+T+++Y+ S
Sbjct: 59 REIAQELAEGAGAELVQVIGKTIVLYKES 87
>gi|421276675|ref|ZP_15727496.1| hypothetical protein SPAR10_0565 [Streptococcus mitis SPAR10]
gi|395876881|gb|EJG87953.1| hypothetical protein SPAR10_0565 [Streptococcus mitis SPAR10]
Length = 103
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHTLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILYKQS 88
>gi|229086904|ref|ZP_04219063.1| hypothetical protein bcere0022_34780 [Bacillus cereus Rock3-44]
gi|228696414|gb|EEL49240.1| hypothetical protein bcere0022_34780 [Bacillus cereus Rock3-44]
Length = 97
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + +V + LEA EL K+ + + C +
Sbjct: 2 LTGKQKRFLRAKAHHLTPIFQ---VGKGGVNENMVKQIADALEARELFKVSVLQNCEFDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + + +V IG T+++Y+ S
Sbjct: 59 REVAEELAKGARAEIVQVIGSTIVLYKES 87
>gi|418950097|ref|ZP_13502302.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-160]
gi|375377771|gb|EHS81216.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-160]
Length = 96
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ +TLE EL+K+ + + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQ---IGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + L EAT S +V IG ++IYR S
Sbjct: 59 KELAETLSEATRSELVQLIGSMIVIYRES 87
>gi|225019240|ref|ZP_03708432.1| hypothetical protein CLOSTMETH_03193 [Clostridium methylpentosum
DSM 5476]
gi|224947871|gb|EEG29080.1| hypothetical protein CLOSTMETH_03193 [Clostridium methylpentosum
DSM 5476]
Length = 95
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ +L S A+ L ++ +GK+G+TD VV E + NEL+K+++ T
Sbjct: 2 ITSKQRAKLRSMANELPTTIQ---IGKNGITDEVVAQIREAILPNELIKLRVLETAMLTA 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + + EATG+ +V IG ++Y+P+
Sbjct: 59 REAAQSIAEATGAEIVQVIGTRFVLYQPN 87
>gi|381169477|ref|ZP_09878642.1| RNA-binding protein YhbY [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|380690067|emb|CCG35129.1| RNA-binding protein YhbY [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
Length = 101
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + E LE +EL+K+K+
Sbjct: 5 LTSAQNRFLRGQAHDLKALLQT---GGKGVTPAFLAELEEVLERHELVKVKVASEDRETR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ +L E TGSA+V +IG T I+YRPS
Sbjct: 62 DALIAELIEQTGSALVQRIGHTAILYRPS 90
>gi|406952956|gb|EKD82389.1| hypothetical protein ACD_39C01328G0004 [uncultured bacterium]
Length = 101
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ ++K L + AH L ++ +GK G+ ++ S IE +EL+KIK+ + P +
Sbjct: 2 KLSSHQRKHLEALAHHLEPIVR---IGKQGLESKIILSVIEAFNTHELIKIKLLDSSPVD 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
++ K++ + + +V IG+ +++YRP
Sbjct: 59 ADEAAKEICQEAEAVLVRVIGRVIVLYRP 87
>gi|424779173|ref|ZP_18206105.1| hypothetical protein C660_20101 [Alcaligenes sp. HPC1271]
gi|422886025|gb|EKU28457.1| hypothetical protein C660_20101 [Alcaligenes sp. HPC1271]
Length = 198
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P LT E+ EL + AH+L + L+G +G+TD V+ L+A++L+KI++
Sbjct: 1 MPKLNLTPHERSELRAAAHALRPVV---LIGDNGLTDAVIKEITVHLQAHQLIKIRVAGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
+++Q+ +A +A + +G+ + IYRP++ R
Sbjct: 58 DRQARLTMLEQICDALDAAPIHHLGKILTIYRPNIER 94
>gi|306829002|ref|ZP_07462193.1| RNA-binding protein [Streptococcus mitis ATCC 6249]
gi|307708268|ref|ZP_07644735.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
gi|322388317|ref|ZP_08061921.1| RNA-binding protein [Streptococcus infantis ATCC 700779]
gi|322392355|ref|ZP_08065816.1| RNA-binding protein [Streptococcus peroris ATCC 700780]
gi|401684034|ref|ZP_10815917.1| RNA-binding protein, YhbY family [Streptococcus sp. BS35b]
gi|406587447|ref|ZP_11062333.1| RNA-binding protein [Streptococcus sp. GMD1S]
gi|417936698|ref|ZP_12580005.1| RNA-binding protein, YhbY family [Streptococcus infantis X]
gi|417940875|ref|ZP_12584163.1| RNA-binding protein, YhbY family [Streptococcus oralis SK313]
gi|418968047|ref|ZP_13519675.1| RNA-binding protein, YhbY family [Streptococcus mitis SK616]
gi|418974971|ref|ZP_13522880.1| RNA-binding protein, YhbY family [Streptococcus oralis SK1074]
gi|419814221|ref|ZP_14339019.1| RNA-binding protein [Streptococcus sp. GMD2S]
gi|419816836|ref|ZP_14341008.1| RNA-binding protein [Streptococcus sp. GMD4S]
gi|419842423|ref|ZP_14365771.1| RNA-binding protein, YhbY family [Streptococcus infantis ATCC
700779]
gi|304428807|gb|EFM31896.1| RNA-binding protein [Streptococcus mitis ATCC 6249]
gi|307615714|gb|EFN94920.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
gi|321140989|gb|EFX36490.1| RNA-binding protein [Streptococcus infantis ATCC 700779]
gi|321144890|gb|EFX40290.1| RNA-binding protein [Streptococcus peroris ATCC 700780]
gi|343389756|gb|EGV02341.1| RNA-binding protein, YhbY family [Streptococcus oralis SK313]
gi|343400214|gb|EGV12734.1| RNA-binding protein, YhbY family [Streptococcus infantis X]
gi|383341337|gb|EID19597.1| RNA-binding protein, YhbY family [Streptococcus mitis SK616]
gi|383348342|gb|EID26301.1| RNA-binding protein, YhbY family [Streptococcus oralis SK1074]
gi|385703900|gb|EIG41002.1| RNA-binding protein, YhbY family [Streptococcus infantis ATCC
700779]
gi|400186339|gb|EJO20551.1| RNA-binding protein, YhbY family [Streptococcus sp. BS35b]
gi|404466600|gb|EKA11918.1| RNA-binding protein [Streptococcus sp. GMD4S]
gi|404472083|gb|EKA16529.1| RNA-binding protein [Streptococcus sp. GMD2S]
gi|404473067|gb|EKA17432.1| RNA-binding protein [Streptococcus sp. GMD1S]
Length = 103
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHTLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILYKQS 88
>gi|373487344|ref|ZP_09578012.1| protein of unknown function UPF0044 [Holophaga foetida DSM 6591]
gi|372009426|gb|EHP10046.1| protein of unknown function UPF0044 [Holophaga foetida DSM 6591]
Length = 100
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+++ L + AH L + +GK+GVTD + + L++ EL+KIK+++ +
Sbjct: 2 LTPKQRQFLKAEAHHLKPVVH---IGKAGVTDALAAELDQMLDSLELMKIKLNQNTSEDE 58
Query: 89 EDVVKQLEE-ATGSAVVSQIGQTVIIYRPSLTR 120
E V+ L+ TG V IG T++++RPS T+
Sbjct: 59 EAAVEALKSRVTGLEHVWTIGHTILVFRPSRTK 91
>gi|386827852|ref|ZP_10114959.1| putative RNA-binding protein, YhbY family [Beggiatoa alba B18LD]
gi|386428736|gb|EIJ42564.1| putative RNA-binding protein, YhbY family [Beggiatoa alba B18LD]
Length = 99
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L S AH+L + +VG G+TD ++ L A+EL+K+ I E
Sbjct: 3 LTSHQTRYLRSIAHALKPVV---MVGSKGITDALLAELDSALAAHELIKVSIASDDREER 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ L +A+G+ +V IG+T ++YRP+
Sbjct: 60 REITDALSKASGAEIVQLIGRTSVLYRPA 88
>gi|385260118|ref|ZP_10038267.1| RNA-binding protein, YhbY family [Streptococcus sp. SK140]
gi|385192038|gb|EIF39448.1| RNA-binding protein, YhbY family [Streptococcus sp. SK140]
Length = 103
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHTLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 HEVAEILEEEIGVYTVQKIGRILILYKQS 88
>gi|450067532|ref|ZP_21846691.1| RNA-binding protein [Streptococcus mutans NLML9]
gi|449207954|gb|EMC08596.1| RNA-binding protein [Streptococcus mutans NLML9]
Length = 102
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS L+A EL+K+ + R ++
Sbjct: 2 LTSKQRAFLKSEAHSLKPIVQ---IGKNGLNDQIKTSVRNALDARELIKVTLLRNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HEVAEILEDEIGLETVLKIGRILILYKES 87
>gi|50513396|pdb|1RQ8|A Chain A, Solution Structure Of The Hypothetical Protein Sav1595
From Staphylococcus Aureus, A Putative Rna Binding
Protein
Length = 104
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ +TLE EL+K+ + + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQ---IGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + L EAT S +V IG ++IYR S
Sbjct: 59 KELAETLSEATRSELVQVIGSMIVIYRES 87
>gi|15924585|ref|NP_372119.1| hypothetical protein SAV1595 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927175|ref|NP_374708.1| hypothetical protein SA1423 [Staphylococcus aureus subsp. aureus
N315]
gi|21283275|ref|NP_646363.1| hypothetical protein MW1546 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486429|ref|YP_043650.1| hypothetical protein SAS1532 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|148268078|ref|YP_001247021.1| hypothetical protein SaurJH9_1652 [Staphylococcus aureus subsp.
aureus JH9]
gi|150394147|ref|YP_001316822.1| hypothetical protein SaurJH1_1687 [Staphylococcus aureus subsp.
aureus JH1]
gi|156979913|ref|YP_001442172.1| hypothetical protein SAHV_1582 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253315368|ref|ZP_04838581.1| hypothetical protein SauraC_04297 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255006380|ref|ZP_05144981.2| hypothetical protein SauraM_07925 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257793671|ref|ZP_05642650.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|258411030|ref|ZP_05681310.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|258420167|ref|ZP_05683122.1| conserved hypothetical protein [Staphylococcus aureus A9719]
gi|258437426|ref|ZP_05689410.1| conserved hypothetical protein [Staphylococcus aureus A9299]
gi|258443632|ref|ZP_05691971.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|258446840|ref|ZP_05694994.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|258448754|ref|ZP_05696866.1| conserved hypothetical protein [Staphylococcus aureus A6224]
gi|258453571|ref|ZP_05701549.1| conserved hypothetical protein [Staphylococcus aureus A5937]
gi|269203222|ref|YP_003282491.1| hypothetical protein SAAV_1586 [Staphylococcus aureus subsp. aureus
ED98]
gi|282893096|ref|ZP_06301330.1| conserved hypothetical protein [Staphylococcus aureus A8117]
gi|282928228|ref|ZP_06335833.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|295406718|ref|ZP_06816523.1| hypothetical protein SMAG_01888 [Staphylococcus aureus A8819]
gi|296276601|ref|ZP_06859108.1| RNA-binding protein YhbY [Staphylococcus aureus subsp. aureus MR1]
gi|297207686|ref|ZP_06924121.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|297245700|ref|ZP_06929565.1| hypothetical protein SLAG_01795 [Staphylococcus aureus A8796]
gi|300911767|ref|ZP_07129210.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH70]
gi|379021376|ref|YP_005298038.1| hypothetical protein M013TW_1609 [Staphylococcus aureus subsp.
aureus M013]
gi|384550422|ref|YP_005739674.1| RNA-binding protein YbhY [Staphylococcus aureus subsp. aureus
JKD6159]
gi|384864815|ref|YP_005750174.1| CRS1 / YhbY domain protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|386831204|ref|YP_006237858.1| hypothetical protein SAEMRSA15_15140 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|387150738|ref|YP_005742302.1| RNA binding protein [Staphylococcus aureus 04-02981]
gi|415692713|ref|ZP_11454633.1| hypothetical protein CGSSa03_02268 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417651197|ref|ZP_12300960.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21172]
gi|417653494|ref|ZP_12303225.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21193]
gi|417797469|ref|ZP_12444665.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21305]
gi|417799888|ref|ZP_12447020.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21310]
gi|417802937|ref|ZP_12449987.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21318]
gi|417894365|ref|ZP_12538384.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21201]
gi|417896969|ref|ZP_12540912.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21235]
gi|417901193|ref|ZP_12545070.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21266]
gi|417905444|ref|ZP_12549255.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21269]
gi|418316401|ref|ZP_12927839.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21340]
gi|418424743|ref|ZP_12997857.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS1]
gi|418427737|ref|ZP_13000742.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS2]
gi|418430580|ref|ZP_13003490.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS3a]
gi|418433722|ref|ZP_13006314.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS4]
gi|418437217|ref|ZP_13009013.1| hypothetical protein MQI_01301 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440117|ref|ZP_13011818.1| hypothetical protein MQK_01156 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443135|ref|ZP_13014734.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS7]
gi|418446199|ref|ZP_13017672.1| hypothetical protein MQO_01984 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418449213|ref|ZP_13020598.1| hypothetical protein MQQ_02629 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418452024|ref|ZP_13023358.1| hypothetical protein MQS_00502 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418455018|ref|ZP_13026277.1| hypothetical protein MQU_01133 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457896|ref|ZP_13029095.1| hypothetical protein MQW_01413 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418562516|ref|ZP_13126973.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21262]
gi|418566956|ref|ZP_13131321.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21272]
gi|418640325|ref|ZP_13202557.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-3]
gi|418652900|ref|ZP_13214863.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-99]
gi|418655637|ref|ZP_13217486.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-105]
gi|418660793|ref|ZP_13222405.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-122]
gi|418878512|ref|ZP_13432747.1| hypothetical protein SACIG1165_2145 [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418881278|ref|ZP_13435495.1| hypothetical protein SACIG1213_2106 [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418884127|ref|ZP_13438320.1| hypothetical protein SACIG1769_2147 [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418886859|ref|ZP_13441007.1| hypothetical protein SACIG1150_2095 [Staphylococcus aureus subsp.
aureus CIG1150]
gi|418895357|ref|ZP_13449452.1| hypothetical protein SACIG1057_2486 [Staphylococcus aureus subsp.
aureus CIG1057]
gi|418914696|ref|ZP_13468667.1| hypothetical protein SACIGC340D_1958 [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|418920675|ref|ZP_13474607.1| hypothetical protein SACIGC348_2456 [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418931899|ref|ZP_13485734.1| hypothetical protein SACIG1750_2306 [Staphylococcus aureus subsp.
aureus CIG1750]
gi|418934565|ref|ZP_13488387.1| hypothetical protein SACIGC128_2091 [Staphylococcus aureus subsp.
aureus CIGC128]
gi|418988661|ref|ZP_13536333.1| hypothetical protein SACIG1835_1911 [Staphylococcus aureus subsp.
aureus CIG1835]
gi|418991522|ref|ZP_13539183.1| hypothetical protein SACIG1096_2182 [Staphylococcus aureus subsp.
aureus CIG1096]
gi|419784687|ref|ZP_14310450.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-M]
gi|424768944|ref|ZP_18196181.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus CM05]
gi|443637572|ref|ZP_21121647.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21236]
gi|448741174|ref|ZP_21723144.1| RNA-binding protein, YhbY family [Staphylococcus aureus KT/314250]
gi|448745069|ref|ZP_21726943.1| Putative Rna Binding Protein [Staphylococcus aureus KT/Y21]
gi|13701393|dbj|BAB42687.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247366|dbj|BAB57757.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204715|dbj|BAB95411.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244872|emb|CAG43333.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|147741147|gb|ABQ49445.1| protein of unknown function UPF0044 [Staphylococcus aureus subsp.
aureus JH9]
gi|149946599|gb|ABR52535.1| protein of unknown function UPF0044 [Staphylococcus aureus subsp.
aureus JH1]
gi|156722048|dbj|BAF78465.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|257787643|gb|EEV25983.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|257840180|gb|EEV64644.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|257843878|gb|EEV68272.1| conserved hypothetical protein [Staphylococcus aureus A9719]
gi|257848631|gb|EEV72619.1| conserved hypothetical protein [Staphylococcus aureus A9299]
gi|257851038|gb|EEV74981.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|257854415|gb|EEV77364.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|257858032|gb|EEV80921.1| conserved hypothetical protein [Staphylococcus aureus A6224]
gi|257864302|gb|EEV87052.1| conserved hypothetical protein [Staphylococcus aureus A5937]
gi|262075512|gb|ACY11485.1| hypothetical protein SAAV_1586 [Staphylococcus aureus subsp. aureus
ED98]
gi|282590035|gb|EFB95117.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|282764414|gb|EFC04540.1| conserved hypothetical protein [Staphylococcus aureus A8117]
gi|285817277|gb|ADC37764.1| RNA binding protein [Staphylococcus aureus 04-02981]
gi|294968465|gb|EFG44489.1| hypothetical protein SMAG_01888 [Staphylococcus aureus A8819]
gi|296887703|gb|EFH26601.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|297177351|gb|EFH36603.1| hypothetical protein SLAG_01795 [Staphylococcus aureus A8796]
gi|300886013|gb|EFK81215.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH70]
gi|302333271|gb|ADL23464.1| RNA-binding protein YbhY [Staphylococcus aureus subsp. aureus
JKD6159]
gi|312829982|emb|CBX34824.1| CRS1 / YhbY domain protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129873|gb|EFT85863.1| hypothetical protein CGSSa03_02268 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329727381|gb|EGG63837.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21172]
gi|329733185|gb|EGG69522.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21193]
gi|334266961|gb|EGL85431.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21305]
gi|334272420|gb|EGL90785.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21310]
gi|334273585|gb|EGL91928.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21318]
gi|341840235|gb|EGS81755.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21235]
gi|341843720|gb|EGS84942.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21269]
gi|341846352|gb|EGS87549.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21266]
gi|341852510|gb|EGS93399.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21201]
gi|359830685|gb|AEV78663.1| hypothetical protein M013TW_1609 [Staphylococcus aureus subsp.
aureus M013]
gi|365241085|gb|EHM81840.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21340]
gi|371973620|gb|EHO90968.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21262]
gi|371982660|gb|EHO99808.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21272]
gi|375014889|gb|EHS08560.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-3]
gi|375021068|gb|EHS14575.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-99]
gi|375036130|gb|EHS29211.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-105]
gi|375040033|gb|EHS32939.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-122]
gi|377694634|gb|EHT18999.1| hypothetical protein SACIG1165_2145 [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377695163|gb|EHT19527.1| hypothetical protein SACIG1057_2486 [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377713077|gb|EHT37290.1| hypothetical protein SACIG1750_2306 [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377714462|gb|EHT38663.1| hypothetical protein SACIG1769_2147 [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377717754|gb|EHT41929.1| hypothetical protein SACIG1835_1911 [Staphylococcus aureus subsp.
aureus CIG1835]
gi|377723644|gb|EHT47769.1| hypothetical protein SACIG1096_2182 [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377725812|gb|EHT49925.1| hypothetical protein SACIG1150_2095 [Staphylococcus aureus subsp.
aureus CIG1150]
gi|377731021|gb|EHT55079.1| hypothetical protein SACIG1213_2106 [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377757022|gb|EHT80918.1| hypothetical protein SACIGC340D_1958 [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|377764401|gb|EHT88254.1| hypothetical protein SACIGC348_2456 [Staphylococcus aureus subsp.
aureus CIGC348]
gi|377770659|gb|EHT94420.1| hypothetical protein SACIGC128_2091 [Staphylococcus aureus subsp.
aureus CIGC128]
gi|383363897|gb|EID41223.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-M]
gi|385196596|emb|CCG16225.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387718025|gb|EIK06020.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS2]
gi|387718092|gb|EIK06086.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS3a]
gi|387719522|gb|EIK07467.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS1]
gi|387724946|gb|EIK12577.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS4]
gi|387727205|gb|EIK14737.1| hypothetical protein MQI_01301 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387730267|gb|EIK17674.1| hypothetical protein MQK_01156 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735131|gb|EIK22268.1| hypothetical protein MQO_01984 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387736493|gb|EIK23584.1| hypothetical protein MQQ_02629 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387736811|gb|EIK23899.1| YhbY family putative RNA-binding protein [Staphylococcus aureus
subsp. aureus VRS7]
gi|387744905|gb|EIK31669.1| hypothetical protein MQS_00502 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745071|gb|EIK31833.1| hypothetical protein MQU_01133 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387746664|gb|EIK33393.1| hypothetical protein MQW_01413 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|402348335|gb|EJU83327.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus CM05]
gi|443405355|gb|ELS63959.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21236]
gi|445548088|gb|ELY16344.1| RNA-binding protein, YhbY family [Staphylococcus aureus KT/314250]
gi|445561608|gb|ELY17801.1| Putative Rna Binding Protein [Staphylococcus aureus KT/Y21]
Length = 96
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ +TLE EL+K+ + + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQ---IGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + L EAT S +V IG ++IYR S
Sbjct: 59 KELAETLSEATRSELVQVIGSMIVIYRES 87
>gi|258424022|ref|ZP_05686904.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|282916865|ref|ZP_06324623.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
D139]
gi|283770670|ref|ZP_06343562.1| YqeI [Staphylococcus aureus subsp. aureus H19]
gi|384547827|ref|YP_005737080.1| hypothetical protein SAOV_1594 [Staphylococcus aureus subsp. aureus
ED133]
gi|385781880|ref|YP_005758051.1| hypothetical protein MS7_1612 [Staphylococcus aureus subsp. aureus
11819-97]
gi|387602935|ref|YP_005734456.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ST398]
gi|387780686|ref|YP_005755484.1| hypothetical protein SARLGA251_15000 [Staphylococcus aureus subsp.
aureus LGA251]
gi|404478945|ref|YP_006710375.1| hypothetical protein C248_1637 [Staphylococcus aureus 08BA02176]
gi|416842865|ref|ZP_11905192.1| hypothetical protein SAO11_2603 [Staphylococcus aureus O11]
gi|416846545|ref|ZP_11906594.1| hypothetical protein SAO46_1236 [Staphylococcus aureus O46]
gi|417889943|ref|ZP_12534022.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21200]
gi|418284092|ref|ZP_12896824.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21202]
gi|418308956|ref|ZP_12920537.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21194]
gi|418310205|ref|ZP_12921755.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21331]
gi|418558857|ref|ZP_13123404.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21252]
gi|418574487|ref|ZP_13138656.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21333]
gi|418889410|ref|ZP_13443543.1| hypothetical protein SACIG1524_2024 [Staphylococcus aureus subsp.
aureus CIG1524]
gi|418978319|ref|ZP_13526120.1| RNA binding protein (CRS1/YhbY family) [Staphylococcus aureus
subsp. aureus DR10]
gi|418994320|ref|ZP_13541955.1| hypothetical protein SACIG290_2201 [Staphylococcus aureus subsp.
aureus CIG290]
gi|257845643|gb|EEV69675.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|282319352|gb|EFB49704.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
D139]
gi|283460817|gb|EFC07907.1| YqeI [Staphylococcus aureus subsp. aureus H19]
gi|283470873|emb|CAQ50084.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ST398]
gi|298694876|gb|ADI98098.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED133]
gi|323438560|gb|EGA96307.1| hypothetical protein SAO11_2603 [Staphylococcus aureus O11]
gi|323442799|gb|EGB00424.1| hypothetical protein SAO46_1236 [Staphylococcus aureus O46]
gi|341855636|gb|EGS96480.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21200]
gi|344177788|emb|CCC88267.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|364522869|gb|AEW65619.1| hypothetical protein MS7_1612 [Staphylococcus aureus subsp. aureus
11819-97]
gi|365164956|gb|EHM56786.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21202]
gi|365236105|gb|EHM77007.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21194]
gi|365237662|gb|EHM78508.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21331]
gi|371976207|gb|EHO93497.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21252]
gi|371979214|gb|EHO96449.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21333]
gi|377744117|gb|EHT68095.1| hypothetical protein SACIG290_2201 [Staphylococcus aureus subsp.
aureus CIG290]
gi|377752918|gb|EHT76836.1| hypothetical protein SACIG1524_2024 [Staphylococcus aureus subsp.
aureus CIG1524]
gi|379993935|gb|EIA15380.1| RNA binding protein (CRS1/YhbY family) [Staphylococcus aureus
subsp. aureus DR10]
gi|404440434|gb|AFR73627.1| hypothetical protein C248_1637 [Staphylococcus aureus 08BA02176]
Length = 96
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ +TLE EL+K+ + + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQ---IGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + L EAT S +V IG ++IYR S
Sbjct: 59 KELAETLSEATRSELVQVIGSMIVIYRES 87
>gi|392395171|ref|YP_006431773.1| RNA-binding protein [Desulfitobacterium dehalogenans ATCC 51507]
gi|390526249|gb|AFM01980.1| putative RNA-binding protein, YhbY family [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 97
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K L S + + L+ +GK GVT+ V+T ETLEA EL+K R P +
Sbjct: 2 LTGKQKGFLRSMGNEMDPILQ---IGKGGVTEAVITQADETLEARELIK---GRVLPNSV 55
Query: 89 EDV---VKQLEEATGSAVVSQIGQTVIIYRPS 117
EDV ++L E T + +V IG+ ++YR S
Sbjct: 56 EDVQRAAEELAERTSAELVQVIGRNFLLYRES 87
>gi|358066816|ref|ZP_09153306.1| hypothetical protein HMPREF9333_00185 [Johnsonella ignava ATCC
51276]
gi|356695087|gb|EHI56738.1| hypothetical protein HMPREF9333_00185 [Johnsonella ignava ATCC
51276]
Length = 98
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK G+TD V+ + E LEA EL+K+ + + C +L+ + ++ T S VV IG+ +I
Sbjct: 22 IGKQGITDEVIEAVKEALEAKELIKLSVLKNCTQDLKSIADEIASCTRSDVVQVIGRKII 81
Query: 113 IYRPS 117
+Y+ +
Sbjct: 82 LYKQA 86
>gi|417091549|ref|ZP_11956426.1| hypothetical protein SSUR61_1334 [Streptococcus suis R61]
gi|353533157|gb|EHC02824.1| hypothetical protein SSUR61_1334 [Streptococcus suis R61]
Length = 103
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILFKQS 88
>gi|289550634|ref|YP_003471538.1| RNA binding protein [Staphylococcus lugdunensis HKU09-01]
gi|385784262|ref|YP_005760435.1| hypothetical protein SLUG_13170 [Staphylococcus lugdunensis
N920143]
gi|418413938|ref|ZP_12987154.1| hypothetical protein HMPREF9308_00319 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180166|gb|ADC87411.1| RNA binding protein [Staphylococcus lugdunensis HKU09-01]
gi|339894518|emb|CCB53799.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
gi|410877576|gb|EKS25468.1| hypothetical protein HMPREF9308_00319 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 96
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH+ + +GKSG+ + + +TLE EL+KI I + +
Sbjct: 2 LTGKQKRYLRSLAHNTDPTFQ---IGKSGINENMCNQISDTLEKRELVKIHILQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
D+ QL +T S VV IG +++Y+ S
Sbjct: 59 NDLAIQLASSTKSEVVQIIGSMIVLYKES 87
>gi|258645346|ref|ZP_05732815.1| RNA-binding protein YhbY [Dialister invisus DSM 15470]
gi|260402695|gb|EEW96242.1| RNA-binding protein YhbY [Dialister invisus DSM 15470]
Length = 96
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S A ++ +GK G+TD V+ S E L A EL+K+KI++ +
Sbjct: 2 LTGKQKQYLKSTAVDFSAVVQ---IGKEGITDNVINSVTEALAARELIKVKINQNSAENI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
K L E +G +V IG+ I+++
Sbjct: 59 RKAAKLLSEESGCEIVQIIGRNCILFK 85
>gi|171780309|ref|ZP_02921213.1| hypothetical protein STRINF_02097 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281657|gb|EDT47092.1| RNA-binding protein, YhbY family [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 117
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ LT K++ L S AHS+ ++ +GK+G+ D + TS L+A EL+K+ + +
Sbjct: 12 IDMLTSKQRAFLKSQAHSMKPIVQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQNTD 68
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ +V + LE+ G V +IG+ +I+Y+ S
Sbjct: 69 EDIHEVAEILEDEIGCDTVLKIGRIIILYKES 100
>gi|261342623|ref|ZP_05970481.1| RNA-binding protein YhbY [Enterobacter cancerogenus ATCC 35316]
gi|334125789|ref|ZP_08499775.1| RNA-binding protein YhbY [Enterobacter hormaechei ATCC 49162]
gi|345301002|ref|YP_004830360.1| RNA-binding, CRM domain-containing protein [Enterobacter asburiae
LF7a]
gi|365972269|ref|YP_004953830.1| RNA-binding protein YhbY [Enterobacter cloacae EcWSU1]
gi|401676916|ref|ZP_10808897.1| RNA-binding protein YhbY [Enterobacter sp. SST3]
gi|288315271|gb|EFC54209.1| RNA-binding protein YhbY [Enterobacter cancerogenus ATCC 35316]
gi|295097666|emb|CBK86756.1| conserved hypothetical protein TIGR00253 [Enterobacter cloacae
subsp. cloacae NCTC 9394]
gi|333386551|gb|EGK57764.1| RNA-binding protein YhbY [Enterobacter hormaechei ATCC 49162]
gi|345094939|gb|AEN66575.1| RNA-binding, CRM domain-containing protein [Enterobacter asburiae
LF7a]
gi|365751182|gb|AEW75409.1| RNA-binding protein YhbY [Enterobacter cloacae EcWSU1]
gi|400215825|gb|EJO46730.1| RNA-binding protein YhbY [Enterobacter sp. SST3]
Length = 110
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 15 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRDT 71
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRPS
Sbjct: 72 KNLIVEAIVRETGACNVQVIGKTLVLYRPS 101
>gi|146318023|ref|YP_001197735.1| RNA-binding protein [Streptococcus suis 05ZYH33]
gi|146320206|ref|YP_001199917.1| RNA-binding protein [Streptococcus suis 98HAH33]
gi|223932250|ref|ZP_03624254.1| protein of unknown function UPF0044 [Streptococcus suis 89/1591]
gi|253751232|ref|YP_003024373.1| hypothetical protein SSUSC84_0323 [Streptococcus suis SC84]
gi|253753133|ref|YP_003026273.1| hypothetical protein SSU0336 [Streptococcus suis P1/7]
gi|253754956|ref|YP_003028096.1| hypothetical protein SSUBM407_0326 [Streptococcus suis BM407]
gi|302023391|ref|ZP_07248602.1| RNA-binding protein [Streptococcus suis 05HAS68]
gi|330832203|ref|YP_004401028.1| RNA-binding protein [Streptococcus suis ST3]
gi|386577335|ref|YP_006073740.1| hypothetical protein [Streptococcus suis GZ1]
gi|386579315|ref|YP_006075720.1| RNA-binding protein [Streptococcus suis JS14]
gi|386581379|ref|YP_006077783.1| RNA-binding protein [Streptococcus suis SS12]
gi|386583489|ref|YP_006079892.1| RNA-binding protein [Streptococcus suis D9]
gi|386585534|ref|YP_006081936.1| RNA-binding protein [Streptococcus suis D12]
gi|386587610|ref|YP_006084011.1| RNA-binding protein [Streptococcus suis A7]
gi|403061019|ref|YP_006649235.1| RNA-binding protein [Streptococcus suis S735]
gi|145688829|gb|ABP89335.1| Predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Streptococcus suis 05ZYH33]
gi|145691012|gb|ABP91517.1| Predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Streptococcus suis 98HAH33]
gi|223899231|gb|EEF65588.1| protein of unknown function UPF0044 [Streptococcus suis 89/1591]
gi|251815521|emb|CAZ51101.1| conserved hypothetical protein [Streptococcus suis SC84]
gi|251817420|emb|CAZ55158.1| conserved hypothetical protein [Streptococcus suis BM407]
gi|251819378|emb|CAR44791.1| conserved hypothetical protein [Streptococcus suis P1/7]
gi|292557797|gb|ADE30798.1| Protein of unknown function UPF0044 [Streptococcus suis GZ1]
gi|319757507|gb|ADV69449.1| RNA-binding protein [Streptococcus suis JS14]
gi|329306426|gb|AEB80842.1| RNA-binding protein [Streptococcus suis ST3]
gi|353733525|gb|AER14535.1| RNA-binding protein [Streptococcus suis SS12]
gi|353735635|gb|AER16644.1| RNA-binding protein [Streptococcus suis D9]
gi|353737680|gb|AER18688.1| RNA-binding protein [Streptococcus suis D12]
gi|354984771|gb|AER43669.1| RNA-binding protein [Streptococcus suis A7]
gi|402808345|gb|AFQ99836.1| RNA-binding protein [Streptococcus suis S735]
Length = 102
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 2 LTSKQRAFLNSQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 59 HEVAEILEEEIGVDTVQKIGRILILFKQS 87
>gi|116872918|ref|YP_849699.1| hypothetical protein lwe1502 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741796|emb|CAK20920.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 96
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT +K+ L AH++ + VGK V+ ++ E LEA EL+KI I + C +
Sbjct: 2 LTATQKRFLRKEAHNIQPIFQ---VGKGSVSPNLIIQVKEALEARELIKISILQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
+ V +++ +G+ +V IG+T+I+Y+ S+ + ++
Sbjct: 59 QTVAEKISARSGADIVQVIGRTIILYKTSVNKQQI 93
>gi|229076008|ref|ZP_04208981.1| hypothetical protein bcere0024_40470 [Bacillus cereus Rock4-18]
gi|229098805|ref|ZP_04229743.1| hypothetical protein bcere0020_40310 [Bacillus cereus Rock3-29]
gi|229104965|ref|ZP_04235621.1| hypothetical protein bcere0019_41030 [Bacillus cereus Rock3-28]
gi|229117831|ref|ZP_04247195.1| hypothetical protein bcere0017_41020 [Bacillus cereus Rock1-3]
gi|407706861|ref|YP_006830446.1| ribonuclease, Rne/Rng [Bacillus thuringiensis MC28]
gi|423377809|ref|ZP_17355093.1| hypothetical protein IC9_01162 [Bacillus cereus BAG1O-2]
gi|423395367|ref|ZP_17372568.1| hypothetical protein ICU_01061 [Bacillus cereus BAG2X1-1]
gi|423406242|ref|ZP_17383391.1| hypothetical protein ICY_00927 [Bacillus cereus BAG2X1-3]
gi|423440917|ref|ZP_17417823.1| hypothetical protein IEA_01247 [Bacillus cereus BAG4X2-1]
gi|423448915|ref|ZP_17425794.1| hypothetical protein IEC_03523 [Bacillus cereus BAG5O-1]
gi|423463982|ref|ZP_17440750.1| hypothetical protein IEK_01169 [Bacillus cereus BAG6O-1]
gi|423533345|ref|ZP_17509763.1| hypothetical protein IGI_01177 [Bacillus cereus HuB2-9]
gi|423541400|ref|ZP_17517791.1| hypothetical protein IGK_03492 [Bacillus cereus HuB4-10]
gi|423547636|ref|ZP_17523994.1| hypothetical protein IGO_04071 [Bacillus cereus HuB5-5]
gi|423615325|ref|ZP_17591159.1| hypothetical protein IIO_00651 [Bacillus cereus VD115]
gi|423622579|ref|ZP_17598357.1| hypothetical protein IK3_01177 [Bacillus cereus VD148]
gi|228665628|gb|EEL21106.1| hypothetical protein bcere0017_41020 [Bacillus cereus Rock1-3]
gi|228678459|gb|EEL32680.1| hypothetical protein bcere0019_41030 [Bacillus cereus Rock3-28]
gi|228684649|gb|EEL38589.1| hypothetical protein bcere0020_40310 [Bacillus cereus Rock3-29]
gi|228707120|gb|EEL59320.1| hypothetical protein bcere0024_40470 [Bacillus cereus Rock4-18]
gi|401129509|gb|EJQ37192.1| hypothetical protein IEC_03523 [Bacillus cereus BAG5O-1]
gi|401172588|gb|EJQ79809.1| hypothetical protein IGK_03492 [Bacillus cereus HuB4-10]
gi|401179357|gb|EJQ86530.1| hypothetical protein IGO_04071 [Bacillus cereus HuB5-5]
gi|401260699|gb|EJR66867.1| hypothetical protein IK3_01177 [Bacillus cereus VD148]
gi|401261004|gb|EJR67171.1| hypothetical protein IIO_00651 [Bacillus cereus VD115]
gi|401636075|gb|EJS53829.1| hypothetical protein IC9_01162 [Bacillus cereus BAG1O-2]
gi|401654778|gb|EJS72317.1| hypothetical protein ICU_01061 [Bacillus cereus BAG2X1-1]
gi|401660236|gb|EJS77718.1| hypothetical protein ICY_00927 [Bacillus cereus BAG2X1-3]
gi|402417578|gb|EJV49878.1| hypothetical protein IEA_01247 [Bacillus cereus BAG4X2-1]
gi|402420249|gb|EJV52520.1| hypothetical protein IEK_01169 [Bacillus cereus BAG6O-1]
gi|402463564|gb|EJV95264.1| hypothetical protein IGI_01177 [Bacillus cereus HuB2-9]
gi|407384546|gb|AFU15047.1| RNA binding protein [Bacillus thuringiensis MC28]
Length = 97
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + +V E LE EL K+ + + C +
Sbjct: 2 LTGKQKRFLRAQAHHLTPIFQ---VGKGGVNENMVKQIGEALEVRELFKVSVLQNCEFDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + + +V IG T+++Y+ S
Sbjct: 59 REVAEELAQGARAEIVQVIGSTIVLYKES 87
>gi|379705905|ref|YP_005204364.1| putative RNA-binding protein [Streptococcus infantarius subsp.
infantarius CJ18]
gi|374682604|gb|AEZ62893.1| putative RNA-binding protein, YhbY family [Streptococcus
infantarius subsp. infantarius CJ18]
Length = 104
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHS+ ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSQAHSMKPIVQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HEVAEILEDEIGCDTVLKIGRIIILYKES 87
>gi|312867250|ref|ZP_07727460.1| RNA-binding protein, YhbY family [Streptococcus parasanguinis
F0405]
gi|322388977|ref|ZP_08062547.1| RNA-binding protein [Streptococcus parasanguinis ATCC 903]
gi|337281511|ref|YP_004620982.1| RNA-binding protein [Streptococcus parasanguinis ATCC 15912]
gi|387879070|ref|YP_006309373.1| Ancient RNA-binding protein (CRS1/YhbY domain) [Streptococcus
parasanguinis FW213]
gi|417917618|ref|ZP_12561177.1| RNA-binding protein, YhbY family [Streptococcus parasanguinis
SK236]
gi|311097379|gb|EFQ55613.1| RNA-binding protein, YhbY family [Streptococcus parasanguinis
F0405]
gi|321144282|gb|EFX39690.1| RNA-binding protein [Streptococcus parasanguinis ATCC 903]
gi|335369104|gb|AEH55054.1| RNA-binding protein [Streptococcus parasanguinis ATCC 15912]
gi|342830255|gb|EGU64594.1| RNA-binding protein, YhbY family [Streptococcus parasanguinis
SK236]
gi|386792525|gb|AFJ25560.1| Ancient RNA-binding protein (CRS1/YhbY domain) [Streptococcus
parasanguinis FW213]
Length = 103
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 60 HEVAEILEEEIGVETVQKIGRILILFKQS 88
>gi|322373552|ref|ZP_08048088.1| putative RNA-binding protein YqeI [Streptococcus sp. C150]
gi|321278594|gb|EFX55663.1| putative RNA-binding protein YqeI [Streptococcus sp. C150]
Length = 105
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 3 LTSKQRAFLKSEAHTLKPIVQ---IGKNGLNDHIKTSVRNALDARELIKVTLLQNTMEDI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +IIY+ S
Sbjct: 60 HEVAEILEEEIGCDTVLKIGRILIIYKES 88
>gi|256545139|ref|ZP_05472505.1| probable RNA-binding protein YqeI [Anaerococcus vaginalis ATCC
51170]
gi|256399180|gb|EEU12791.1| probable RNA-binding protein YqeI [Anaerococcus vaginalis ATCC
51170]
Length = 95
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
SY SL LK + +GK+ +TD V+TS E LE EL+KIKI + +++V ++ E
Sbjct: 8 SYLKSLAHDLKPIVNIGKNSLTDEVITSIDEALEKRELIKIKILNNNLDDNDEIVDEVIE 67
Query: 98 ATGSAVVSQIGQTVIIYRPS 117
VS +G IYR S
Sbjct: 68 KLNCEFVSHLGNIFTIYRES 87
>gi|419799120|ref|ZP_14324488.1| RNA-binding protein, YhbY family [Streptococcus parasanguinis
F0449]
gi|385698660|gb|EIG29007.1| RNA-binding protein, YhbY family [Streptococcus parasanguinis
F0449]
Length = 103
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 60 HEVAEILEEEIGVETVQKIGRILILFKQS 88
>gi|16803529|ref|NP_465014.1| hypothetical protein lmo1489 [Listeria monocytogenes EGD-e]
gi|46907717|ref|YP_014106.1| hypothetical protein LMOf2365_1508 [Listeria monocytogenes serotype
4b str. F2365]
gi|47095442|ref|ZP_00233052.1| conserved hypothetical protein TIGR00253 [Listeria monocytogenes
str. 1/2a F6854]
gi|217964365|ref|YP_002350043.1| hypothetical protein LMHCC_1081 [Listeria monocytogenes HCC23]
gi|254824452|ref|ZP_05229453.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254827777|ref|ZP_05232464.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|254852113|ref|ZP_05241461.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|254912163|ref|ZP_05262175.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254931424|ref|ZP_05264783.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|254936491|ref|ZP_05268188.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|254992211|ref|ZP_05274401.1| hypothetical protein LmonocytoFSL_03344 [Listeria monocytogenes FSL
J2-064]
gi|255023235|ref|ZP_05295221.1| hypothetical protein LmonocyFSL_06825 [Listeria monocytogenes FSL
J1-208]
gi|255520853|ref|ZP_05388090.1| hypothetical protein LmonocFSL_06441 [Listeria monocytogenes FSL
J1-175]
gi|284801876|ref|YP_003413741.1| hypothetical protein LM5578_1631 [Listeria monocytogenes 08-5578]
gi|284995018|ref|YP_003416786.1| hypothetical protein LM5923_1583 [Listeria monocytogenes 08-5923]
gi|290893849|ref|ZP_06556827.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|300764846|ref|ZP_07074836.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|386008260|ref|YP_005926538.1| RNA-binding protein containing KH domain, putattive [Listeria
monocytogenes L99]
gi|386026861|ref|YP_005947637.1| hypothetical protein LMM7_1574 [Listeria monocytogenes M7]
gi|386043800|ref|YP_005962605.1| hypothetical protein [Listeria monocytogenes 10403S]
gi|386047141|ref|YP_005965473.1| hypothetical protein [Listeria monocytogenes J0161]
gi|386050465|ref|YP_005968456.1| hypothetical protein [Listeria monocytogenes FSL R2-561]
gi|386053742|ref|YP_005971300.1| hypothetical protein [Listeria monocytogenes Finland 1998]
gi|386732228|ref|YP_006205724.1| hypothetical protein MUO_07670 [Listeria monocytogenes 07PF0776]
gi|404281047|ref|YP_006681945.1| RNA-binding protein [Listeria monocytogenes SLCC2755]
gi|404283981|ref|YP_006684878.1| RNA-binding protein [Listeria monocytogenes SLCC2372]
gi|404286911|ref|YP_006693497.1| RNA-binding protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|404407927|ref|YP_006690642.1| RNA-binding protein [Listeria monocytogenes SLCC2376]
gi|404410790|ref|YP_006696378.1| RNA-binding protein [Listeria monocytogenes SLCC5850]
gi|404413568|ref|YP_006699155.1| RNA-binding protein [Listeria monocytogenes SLCC7179]
gi|405749833|ref|YP_006673299.1| RNA-binding protein [Listeria monocytogenes ATCC 19117]
gi|405752709|ref|YP_006676174.1| RNA-binding protein [Listeria monocytogenes SLCC2378]
gi|405755647|ref|YP_006679111.1| RNA-binding protein [Listeria monocytogenes SLCC2540]
gi|405758537|ref|YP_006687813.1| RNA-binding protein [Listeria monocytogenes SLCC2479]
gi|406704262|ref|YP_006754616.1| RNA-binding protein containing KH domain, putattive [Listeria
monocytogenes L312]
gi|417316033|ref|ZP_12102691.1| hypothetical protein LM1816_06335 [Listeria monocytogenes J1816]
gi|417317608|ref|ZP_12104220.1| hypothetical protein LM220_11647 [Listeria monocytogenes J1-220]
gi|422809568|ref|ZP_16857979.1| RNA binding protein [Listeria monocytogenes FSL J1-208]
gi|424714364|ref|YP_007015079.1| Probable RNA-binding protein YqeI [Listeria monocytogenes serotype
4b str. LL195]
gi|424823251|ref|ZP_18248264.1| YqeI [Listeria monocytogenes str. Scott A]
gi|16410918|emb|CAC99567.1| lmo1489 [Listeria monocytogenes EGD-e]
gi|46880986|gb|AAT04283.1| conserved hypothetical protein TIGR00253 [Listeria monocytogenes
serotype 4b str. F2365]
gi|47016263|gb|EAL07186.1| conserved hypothetical protein TIGR00253 [Listeria monocytogenes
serotype 1/2a str. F6854]
gi|217333635|gb|ACK39429.1| conserved hypothetical protein [Listeria monocytogenes HCC23]
gi|258600157|gb|EEW13482.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258605415|gb|EEW18023.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|258609084|gb|EEW21692.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|284057438|gb|ADB68379.1| hypothetical protein LM5578_1631 [Listeria monocytogenes 08-5578]
gi|284060485|gb|ADB71424.1| hypothetical protein LM5923_1583 [Listeria monocytogenes 08-5923]
gi|290556566|gb|EFD90102.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|293582974|gb|EFF95006.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|293590135|gb|EFF98469.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|293593689|gb|EFG01450.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|300514522|gb|EFK41579.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|307571070|emb|CAR84249.1| RNA-binding protein containing KH domain, putattive [Listeria
monocytogenes L99]
gi|328465530|gb|EGF36759.1| hypothetical protein LM1816_06335 [Listeria monocytogenes J1816]
gi|328474856|gb|EGF45656.1| hypothetical protein LM220_11647 [Listeria monocytogenes J1-220]
gi|332311931|gb|EGJ25026.1| YqeI [Listeria monocytogenes str. Scott A]
gi|336023442|gb|AEH92579.1| hypothetical protein LMM7_1574 [Listeria monocytogenes M7]
gi|345534132|gb|AEO03573.1| hypothetical protein LMOG_00210 [Listeria monocytogenes J0161]
gi|345537034|gb|AEO06474.1| hypothetical protein LMRG_00942 [Listeria monocytogenes 10403S]
gi|346424311|gb|AEO25836.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-561]
gi|346646393|gb|AEO39018.1| conserved hypothetical protein [Listeria monocytogenes Finland
1998]
gi|378753182|gb|EHY63767.1| RNA binding protein [Listeria monocytogenes FSL J1-208]
gi|384390986|gb|AFH80056.1| hypothetical protein MUO_07670 [Listeria monocytogenes 07PF0776]
gi|404219033|emb|CBY70397.1| RNA-binding protein containing KH domain, putattive [Listeria
monocytogenes ATCC 19117]
gi|404221909|emb|CBY73272.1| RNA-binding protein containing KH domain, putattive [Listeria
monocytogenes SLCC2378]
gi|404224847|emb|CBY76209.1| RNA-binding protein containing KH domain, putattive [Listeria
monocytogenes SLCC2540]
gi|404227682|emb|CBY49087.1| RNA-binding protein containing KH domain, putattive [Listeria
monocytogenes SLCC2755]
gi|404230616|emb|CBY52020.1| RNA-binding protein containing KH domain, putattive [Listeria
monocytogenes SLCC5850]
gi|404233483|emb|CBY54886.1| RNA-binding protein containing KH domain, putattive [Listeria
monocytogenes SLCC2372]
gi|404236419|emb|CBY57821.1| RNA-binding protein containing KH domain, putattive [Listeria
monocytogenes SLCC2479]
gi|404239267|emb|CBY60668.1| RNA-binding protein containing KH domain, putattive [Listeria
monocytogenes SLCC7179]
gi|404242076|emb|CBY63476.1| RNA-binding protein containing KH domain, putattive [Listeria
monocytogenes SLCC2376]
gi|404245840|emb|CBY04065.1| RNA-binding protein containing KH domain, putattive [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|406361292|emb|CBY67565.1| RNA-binding protein containing KH domain, putattive [Listeria
monocytogenes L312]
gi|424013548|emb|CCO64088.1| Probable RNA-binding protein YqeI [Listeria monocytogenes serotype
4b str. LL195]
gi|441471181|emb|CCQ20936.1| Probable RNA-binding protein YqeI [Listeria monocytogenes]
gi|441474310|emb|CCQ24064.1| Probable RNA-binding protein YqeI [Listeria monocytogenes N53-1]
Length = 96
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT +K+ L AH++ + VGK V+ ++ E LEA EL+KI I + C +
Sbjct: 2 LTATQKRFLRKEAHNIQPIFQ---VGKGSVSPNLIIHVKEALEARELIKISILQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
+ V +++ +G+ +V IG+T+I+Y+ S+ + ++
Sbjct: 59 QTVAEKISARSGAEIVQVIGRTIILYKTSVNKQQI 93
>gi|261856560|ref|YP_003263843.1| hypothetical protein Hneap_1974 [Halothiobacillus neapolitanus c2]
gi|261837029|gb|ACX96796.1| protein of unknown function UPF0044 [Halothiobacillus neapolitanus
c2]
Length = 106
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + L+G+ G+TD V+ L +EL+K++I PG+
Sbjct: 3 LTNKQKQFLRAQAHHLNPVV---LLGQHGLTDAVMAEIELALSIHELIKVRI----PGQD 55
Query: 89 ED----VVKQLEEATGSAVVSQIGQTVIIYRPS 117
D +++Q+ TGS +V +G + YRP
Sbjct: 56 RDDKKNMMQQIATTTGSELVQSVGHIAVFYRPD 88
>gi|320547438|ref|ZP_08041725.1| RNA-binding protein [Streptococcus equinus ATCC 9812]
gi|320447915|gb|EFW88671.1| RNA-binding protein [Streptococcus equinus ATCC 9812]
Length = 104
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHS+ ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSQAHSMKPIVQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HEVAEILEDEIGCDTVLKIGRIIILYKES 87
>gi|257066423|ref|YP_003152679.1| hypothetical protein Apre_0930 [Anaerococcus prevotii DSM 20548]
gi|256798303|gb|ACV28958.1| protein of unknown function UPF0044 [Anaerococcus prevotii DSM
20548]
Length = 94
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ +L +H + +GK VTD ++ + E LEA EL+KIKI +
Sbjct: 2 LTGKQRAKLKQESHDFKPVIN---IGKFSVTDELIKAIDEALEARELIKIKILNNNMDDQ 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E+++ + E TGS +S +G IYR +
Sbjct: 59 EEIIDTIIEKTGSEFISHLGSIFTIYRKN 87
>gi|335429481|ref|ZP_08556379.1| hypothetical protein HLPCO_10908 [Haloplasma contractile SSD-17B]
gi|334889491|gb|EGM27776.1| hypothetical protein HLPCO_10908 [Haloplasma contractile SSD-17B]
Length = 96
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+++ L S AH + + +GK+G++D + + + LEA+EL+K+ + + C +
Sbjct: 2 LTGKQRRHLRSLAHKVNPVTQ---IGKNGLSDNLFKTLDDALEAHELIKVSVLQNCLLDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + L + V QIG +++YR S
Sbjct: 59 DEITESLTNELEAERVQQIGNQIVLYRES 87
>gi|314933765|ref|ZP_07841130.1| probable RNA-binding protein YqeI [Staphylococcus caprae C87]
gi|313653915|gb|EFS17672.1| probable RNA-binding protein YqeI [Staphylococcus caprae C87]
Length = 96
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH+ + +GK G+ + +++ ETLE EL+KI + + +
Sbjct: 2 LTGKQKRYLRSLAHNTDPTFQ---IGKGGINENMISQIDETLEKRELIKIHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ +L +AT S +V IG +++Y+ S
Sbjct: 59 NELANELSQATKSELVQVIGSMIVLYKES 87
>gi|383453083|ref|YP_005367072.1| hypothetical protein COCOR_01066 [Corallococcus coralloides DSM
2259]
gi|380727846|gb|AFE03848.1| hypothetical protein COCOR_01066 [Corallococcus coralloides DSM
2259]
Length = 118
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT KE++ L + H L + +VG SGVT+GV+ + + L +EL+K+KI+ G
Sbjct: 3 LTGKERRHLRALGHHLEPVV---IVGSSGVTEGVIAAVEQALNDHELIKVKINEGPEGRH 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQAR 131
E + EATGS + +G+T + ++ +KQQ+R
Sbjct: 60 EG-ADSIAEATGSELAQLLGRTALFFK---------RRKQQSR 92
>gi|229019558|ref|ZP_04176374.1| hypothetical protein bcere0030_40610 [Bacillus cereus AH1273]
gi|229025799|ref|ZP_04182198.1| hypothetical protein bcere0029_40900 [Bacillus cereus AH1272]
gi|423389349|ref|ZP_17366575.1| hypothetical protein ICG_01197 [Bacillus cereus BAG1X1-3]
gi|423417742|ref|ZP_17394831.1| hypothetical protein IE3_01214 [Bacillus cereus BAG3X2-1]
gi|423483916|ref|ZP_17460606.1| hypothetical protein IEQ_03694 [Bacillus cereus BAG6X1-2]
gi|423558083|ref|ZP_17534385.1| hypothetical protein II3_03287 [Bacillus cereus MC67]
gi|228735507|gb|EEL86103.1| hypothetical protein bcere0029_40900 [Bacillus cereus AH1272]
gi|228741724|gb|EEL91908.1| hypothetical protein bcere0030_40610 [Bacillus cereus AH1273]
gi|401106913|gb|EJQ14870.1| hypothetical protein IE3_01214 [Bacillus cereus BAG3X2-1]
gi|401141467|gb|EJQ49022.1| hypothetical protein IEQ_03694 [Bacillus cereus BAG6X1-2]
gi|401191351|gb|EJQ98373.1| hypothetical protein II3_03287 [Bacillus cereus MC67]
gi|401641440|gb|EJS59157.1| hypothetical protein ICG_01197 [Bacillus cereus BAG1X1-3]
Length = 97
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + +V E LE EL K+ + + C +
Sbjct: 2 LTGKQKRFLRAKAHHLTPIFQ---VGKGGVNENMVKQIGEALEVRELFKVSVLQNCEFDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + + +V IG T+++Y+ S
Sbjct: 59 REVAEELAQGARAEIVQVIGSTIVLYKES 87
>gi|423521808|ref|ZP_17498281.1| hypothetical protein IGC_01191 [Bacillus cereus HuA4-10]
gi|401176470|gb|EJQ83665.1| hypothetical protein IGC_01191 [Bacillus cereus HuA4-10]
Length = 97
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + +V E LE EL K+ + + C +
Sbjct: 2 LTGKQKRFLRAKAHHLTPIFQ---VGKGGVNENMVKQIGEALEVRELFKVSVLQNCEFDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + + +V IG T+++Y+ S
Sbjct: 59 SEVAEELAQGARAEIVQVIGSTIVLYKES 87
>gi|223044393|ref|ZP_03614427.1| conserved hypothetical protein [Staphylococcus capitis SK14]
gi|222442262|gb|EEE48373.1| conserved hypothetical protein [Staphylococcus capitis SK14]
Length = 96
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH+ + +GK G+ + +++ ETLE EL+KI + + +
Sbjct: 2 LTGKQKRYLRSLAHNTDPTFQ---IGKGGINENMISQIDETLEKRELIKIHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ +L +AT S +V IG +++Y+ S
Sbjct: 59 NELANELSQATKSELVQVIGSMIVLYKES 87
>gi|384109755|ref|ZP_10010620.1| putative RNA-binding protein, YhbY family [Treponema sp. JC4]
gi|383868698|gb|EID84332.1| putative RNA-binding protein, YhbY family [Treponema sp. JC4]
Length = 93
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ +LT K++KEL AH L + +VG +GVTDGV ++L A+EL+KIK +
Sbjct: 1 MIELTSKQRKELEKAAHDLQPVV---IVGGAGVTDGVTKMVDDSLAAHELIKIKFNEYKD 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
++E + QL EA + +V IG I++R
Sbjct: 58 EKVE-LTNQLCEACDATLVRIIGNVAILFR 86
>gi|418313188|ref|ZP_12924682.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21334]
gi|365236459|gb|EHM77348.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus 21334]
Length = 96
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K+K+ L S AH++ + +GK G+ + ++ +TLE EL+K+ + + +
Sbjct: 2 ITGKQKRYLRSLAHNIDPIFQ---IGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + L EAT S +V IG ++IYR S
Sbjct: 59 KELAETLSEATHSELVQVIGSMIVIYRES 87
>gi|304403897|ref|ZP_07385559.1| protein of unknown function UPF0044 [Paenibacillus curdlanolyticus
YK9]
gi|304346875|gb|EFM12707.1| protein of unknown function UPF0044 [Paenibacillus curdlanolyticus
YK9]
Length = 99
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK G + ++ E +E EL+K+ + C +
Sbjct: 2 LTGKQKRHLRSLAHHLTPIFQ---VGKGGTNEHIMKHIEEAIETRELIKVSVLNNCGDDP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ ++L + +G +V IG+T+++Y+ S
Sbjct: 59 KEIGQELAQGSGCELVQVIGKTIVLYKES 87
>gi|422419092|ref|ZP_16496047.1| probable RNA-binding protein YqeI, partial [Listeria seeligeri FSL
N1-067]
gi|313633196|gb|EFS00075.1| probable RNA-binding protein YqeI [Listeria seeligeri FSL N1-067]
Length = 90
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 34 KKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVK 93
K+ L AHS+ + VGK V+ ++ E LEA EL+KI I + C + + V +
Sbjct: 1 KRFLRKEAHSIQPIFQ---VGKGSVSPNLIIQVKEALEARELIKISILQNCEEDKQTVAE 57
Query: 94 QLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
++ TG+ +V IG+T+I+Y+ S+ + ++
Sbjct: 58 KISSRTGADIVQVIGRTIILYKQSVNKQQI 87
>gi|33596680|ref|NP_884323.1| hypothetical protein BPP2065 [Bordetella parapertussis 12822]
gi|33573381|emb|CAE37365.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 200
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P+ +LT +E+ +L S AH L + L+G +G+TD V+ L A+EL+K++
Sbjct: 1 MPISELTSRERSDLRSAAHPLRPVV---LIGDNGLTDAVLKEIDLALTAHELIKVRAGGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
E ++ + + A V +G+T+I++RP L
Sbjct: 58 DREAREAMLATICDTLSCAAVHHLGKTLILFRPDL 92
>gi|423612544|ref|ZP_17588405.1| hypothetical protein IIM_03259 [Bacillus cereus VD107]
gi|401246133|gb|EJR52485.1| hypothetical protein IIM_03259 [Bacillus cereus VD107]
Length = 97
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + +V E LE EL K+ + + C +
Sbjct: 2 LTGKQKRFLRAKAHHLTPIFQ---VGKGGVNENMVKQIGEALEVRELFKVSVLQNCEFDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + + +V IG T+++Y+ S
Sbjct: 59 REVAEELAQGARAEIVQVIGSTIVLYKES 87
>gi|422422213|ref|ZP_16499166.1| probable RNA-binding protein YqeI, partial [Listeria seeligeri FSL
S4-171]
gi|313637782|gb|EFS03134.1| probable RNA-binding protein YqeI [Listeria seeligeri FSL S4-171]
Length = 93
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 34 KKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVK 93
K+ L AHS+ + VGK V+ ++ E LEA EL+KI I + C + + V +
Sbjct: 4 KRFLRKEAHSIQPIFQ---VGKGSVSPNLIIQVKEALEARELIKISILQNCEEDKQTVAE 60
Query: 94 QLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
++ TG+ +V IG+T+I+Y+ S+ + ++
Sbjct: 61 KISSRTGADIVQVIGRTIILYKQSVNKQQI 90
>gi|419783371|ref|ZP_14309159.1| RNA-binding protein, YhbY family [Streptococcus oralis SK610]
gi|383182255|gb|EIC74813.1| RNA-binding protein, YhbY family [Streptococcus oralis SK610]
Length = 103
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHTLKPIIQ---IGKNGLNDQIKTSIRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILFKQS 88
>gi|354725379|ref|ZP_09039594.1| RNA-binding protein YhbY [Enterobacter mori LMG 25706]
gi|401765370|ref|YP_006580377.1| RNA-binding protein YhbY [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|419959511|ref|ZP_14475564.1| RNA-binding protein YhbY [Enterobacter cloacae subsp. cloacae GS1]
gi|388605592|gb|EIM34809.1| RNA-binding protein YhbY [Enterobacter cloacae subsp. cloacae GS1]
gi|400176904|gb|AFP71753.1| RNA-binding protein YhbY [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 97
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRDT 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRPS
Sbjct: 59 KNLIVEAIVRETGACNVQVIGKTLVLYRPS 88
>gi|389856063|ref|YP_006358306.1| RNA-binding protein [Streptococcus suis ST1]
gi|353739781|gb|AER20788.1| RNA-binding protein [Streptococcus suis ST1]
Length = 102
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 2 LTSKQRAFLNSQAHSLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 59 PEVAEILEEEIGVDTVQKIGRILILFKQS 87
>gi|163942089|ref|YP_001646973.1| hypothetical protein BcerKBAB4_4184 [Bacillus weihenstephanensis
KBAB4]
gi|229013554|ref|ZP_04170687.1| hypothetical protein bmyco0001_39630 [Bacillus mycoides DSM 2048]
gi|229062032|ref|ZP_04199357.1| hypothetical protein bcere0026_41040 [Bacillus cereus AH603]
gi|229135159|ref|ZP_04263959.1| hypothetical protein bcere0014_40610 [Bacillus cereus BDRD-ST196]
gi|229169081|ref|ZP_04296796.1| hypothetical protein bcere0007_40330 [Bacillus cereus AH621]
gi|423368384|ref|ZP_17345816.1| hypothetical protein IC3_03485 [Bacillus cereus VD142]
gi|423452363|ref|ZP_17429216.1| hypothetical protein IEE_01107 [Bacillus cereus BAG5X1-1]
gi|423470555|ref|ZP_17447299.1| hypothetical protein IEM_01861 [Bacillus cereus BAG6O-2]
gi|423489517|ref|ZP_17466199.1| hypothetical protein IEU_04140 [Bacillus cereus BtB2-4]
gi|423495240|ref|ZP_17471884.1| hypothetical protein IEW_04138 [Bacillus cereus CER057]
gi|423497966|ref|ZP_17474583.1| hypothetical protein IEY_01193 [Bacillus cereus CER074]
gi|423512447|ref|ZP_17488978.1| hypothetical protein IG3_03944 [Bacillus cereus HuA2-1]
gi|423519033|ref|ZP_17495514.1| hypothetical protein IG7_04103 [Bacillus cereus HuA2-4]
gi|423591671|ref|ZP_17567702.1| hypothetical protein IIG_00539 [Bacillus cereus VD048]
gi|423598350|ref|ZP_17574350.1| hypothetical protein III_01152 [Bacillus cereus VD078]
gi|423660822|ref|ZP_17635991.1| hypothetical protein IKM_01219 [Bacillus cereus VDM022]
gi|423669919|ref|ZP_17644948.1| hypothetical protein IKO_03616 [Bacillus cereus VDM034]
gi|423673877|ref|ZP_17648816.1| hypothetical protein IKS_01420 [Bacillus cereus VDM062]
gi|163864286|gb|ABY45345.1| protein of unknown function UPF0044 [Bacillus weihenstephanensis
KBAB4]
gi|228614309|gb|EEK71419.1| hypothetical protein bcere0007_40330 [Bacillus cereus AH621]
gi|228648287|gb|EEL04322.1| hypothetical protein bcere0014_40610 [Bacillus cereus BDRD-ST196]
gi|228717184|gb|EEL68859.1| hypothetical protein bcere0026_41040 [Bacillus cereus AH603]
gi|228747714|gb|EEL97584.1| hypothetical protein bmyco0001_39630 [Bacillus mycoides DSM 2048]
gi|401080711|gb|EJP88995.1| hypothetical protein IC3_03485 [Bacillus cereus VD142]
gi|401140001|gb|EJQ47558.1| hypothetical protein IEE_01107 [Bacillus cereus BAG5X1-1]
gi|401151333|gb|EJQ58785.1| hypothetical protein IEW_04138 [Bacillus cereus CER057]
gi|401160088|gb|EJQ67467.1| hypothetical protein IG7_04103 [Bacillus cereus HuA2-4]
gi|401161253|gb|EJQ68620.1| hypothetical protein IEY_01193 [Bacillus cereus CER074]
gi|401231804|gb|EJR38306.1| hypothetical protein IIG_00539 [Bacillus cereus VD048]
gi|401236620|gb|EJR43077.1| hypothetical protein III_01152 [Bacillus cereus VD078]
gi|401299046|gb|EJS04646.1| hypothetical protein IKO_03616 [Bacillus cereus VDM034]
gi|401300863|gb|EJS06452.1| hypothetical protein IKM_01219 [Bacillus cereus VDM022]
gi|401310243|gb|EJS15568.1| hypothetical protein IKS_01420 [Bacillus cereus VDM062]
gi|402431753|gb|EJV63817.1| hypothetical protein IEU_04140 [Bacillus cereus BtB2-4]
gi|402436221|gb|EJV68253.1| hypothetical protein IEM_01861 [Bacillus cereus BAG6O-2]
gi|402449418|gb|EJV81255.1| hypothetical protein IG3_03944 [Bacillus cereus HuA2-1]
Length = 97
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + +V E LE EL K+ + + C +
Sbjct: 2 LTGKQKRFLRAKAHHLTPIFQ---VGKGGVNENMVKQIGEALEVRELFKVSVLQNCEFDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + + +V IG T+++Y+ S
Sbjct: 59 SEVAEELAQGARAEIVQVIGSTIVLYKES 87
>gi|291563409|emb|CBL42225.1| conserved hypothetical protein TIGR00253 [butyrate-producing
bacterium SS3/4]
Length = 97
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L A ++ L+ +GKS +T + S E L A EL+KI + + C +
Sbjct: 1 MTSKQRSYLKGLAMTMDAVLQ---IGKSSLTPEITKSVEEALNARELIKIHVLKNCADDG 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+D+ + L E T S VV IG+ +++Y+P+
Sbjct: 58 KDLAQILAERTHSEVVQVIGKMIVLYKPA 86
>gi|421859667|ref|ZP_16291871.1| predicted RNA-binding protein [Paenibacillus popilliae ATCC 14706]
gi|410830765|dbj|GAC42308.1| predicted RNA-binding protein [Paenibacillus popilliae ATCC 14706]
Length = 96
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH + + VGK G D ++ E LE EL+K+ I C +
Sbjct: 2 LTGKQKRYLRSLAHHVQPIFQ---VGKGGTNDQLIRHIEEALEVRELIKVSILSNCMDDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
+V +L +G+ +V IG+T+++Y+ S ++E
Sbjct: 59 FEVADELAGRSGAELVQVIGKTIVLYKESAEHKQIE 94
>gi|337748423|ref|YP_004642585.1| hypothetical protein KNP414_04183 [Paenibacillus mucilaginosus
KNP414]
gi|336299612|gb|AEI42715.1| YqeI [Paenibacillus mucilaginosus KNP414]
Length = 97
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + ++ + +E EL+K+ + C +
Sbjct: 2 LTGKQKRYLRSLAHHLDPIFQ---VGKGGVNEHIIRHINDAIETRELIKVTVLNNCMEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++V +QL + + +V IG+ V++Y+ S
Sbjct: 59 DEVAQQLADGAKAELVQVIGKIVVLYKES 87
>gi|315658129|ref|ZP_07911001.1| RNA binding protein [Staphylococcus lugdunensis M23590]
gi|315496458|gb|EFU84781.1| RNA binding protein [Staphylococcus lugdunensis M23590]
Length = 96
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH+ + +GKSG+ + + +TLE EL+KI I + +
Sbjct: 2 LTGKQKRYLRSLAHNTDPTFQ---IGKSGINENMCKQISDTLEKRELVKIHILQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
D+ QL +T S VV IG +++Y+ S
Sbjct: 59 NDLAIQLASSTKSEVVQIIGSMIVLYKES 87
>gi|402815731|ref|ZP_10865323.1| putative RNA-binding protein YqeI [Paenibacillus alvei DSM 29]
gi|402506771|gb|EJW17294.1| putative RNA-binding protein YqeI [Paenibacillus alvei DSM 29]
Length = 96
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK G+ D +V + +E EL+K+ + C +
Sbjct: 2 LTGKQKRYLRSLAHHLQPIFQ---VGKGGMNDQLVRHVEDAIEKRELMKVSVLNNCLEDP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++ ++L +GS +V IG+T+++Y+ S ++E
Sbjct: 59 REIGEELASRSGSELVQVIGKTIVLYKESTDHKQIE 94
>gi|306834206|ref|ZP_07467326.1| RNA-binding protein [Streptococcus bovis ATCC 700338]
gi|336064940|ref|YP_004559799.1| putative RNA-binding protein containing KH domain [Streptococcus
pasteurianus ATCC 43144]
gi|304423779|gb|EFM26925.1| RNA-binding protein [Streptococcus bovis ATCC 700338]
gi|334283140|dbj|BAK30713.1| putative RNA-binding protein containing KH domain [Streptococcus
pasteurianus ATCC 43144]
Length = 110
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 23 PLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHR 82
P + LT K++ L S AHS+ ++ +GK+G+ D + TS L+A EL+K+ + +
Sbjct: 2 PDMIIMLTSKQRAFLKSQAHSMKPIVQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQ 58
Query: 83 TCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ +V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 NTDEDIHEVAEILEDEIGCDTVLKIGRILILYKES 93
>gi|228941500|ref|ZP_04104050.1| hypothetical protein bthur0008_41380 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228974430|ref|ZP_04134998.1| hypothetical protein bthur0003_41840 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228981025|ref|ZP_04141327.1| hypothetical protein bthur0002_41870 [Bacillus thuringiensis Bt407]
gi|229163282|ref|ZP_04291236.1| hypothetical protein bcere0009_40500 [Bacillus cereus R309803]
gi|384188407|ref|YP_005574303.1| RNA-binding protein [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676722|ref|YP_006929093.1| putative RNA-binding protein YqeI [Bacillus thuringiensis Bt407]
gi|423385835|ref|ZP_17363091.1| hypothetical protein ICE_03581 [Bacillus cereus BAG1X1-2]
gi|423527808|ref|ZP_17504253.1| hypothetical protein IGE_01360 [Bacillus cereus HuB1-1]
gi|452200799|ref|YP_007480880.1| RNA binding protein [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
gi|228620189|gb|EEK77061.1| hypothetical protein bcere0009_40500 [Bacillus cereus R309803]
gi|228778685|gb|EEM26950.1| hypothetical protein bthur0002_41870 [Bacillus thuringiensis Bt407]
gi|228785266|gb|EEM33277.1| hypothetical protein bthur0003_41840 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818150|gb|EEM64225.1| hypothetical protein bthur0008_41380 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326942116|gb|AEA18012.1| RNA-binding protein [Bacillus thuringiensis serovar chinensis
CT-43]
gi|401635891|gb|EJS53646.1| hypothetical protein ICE_03581 [Bacillus cereus BAG1X1-2]
gi|402451471|gb|EJV83290.1| hypothetical protein IGE_01360 [Bacillus cereus HuB1-1]
gi|409175851|gb|AFV20156.1| putative RNA-binding protein YqeI [Bacillus thuringiensis Bt407]
gi|452106192|gb|AGG03132.1| RNA binding protein [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
Length = 97
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + +V E LE EL K+ + + C +
Sbjct: 2 LTGKQKRFLRAQAHHLTPIFQ---VGKGGVNENMVKQIGEALEVRELFKVSVLQNCEFDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L + + +V IG T+++Y+ S
Sbjct: 59 REVAEELAKGARAEIVQVIGSTIVLYKES 87
>gi|227519404|ref|ZP_03949453.1| RNA-binding protein [Enterococcus faecalis TX0104]
gi|257084224|ref|ZP_05578585.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|424678030|ref|ZP_18114875.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV103]
gi|424679268|ref|ZP_18116095.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV116]
gi|424682893|ref|ZP_18119651.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV129]
gi|424686800|ref|ZP_18123465.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV25]
gi|424692180|ref|ZP_18128693.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV31]
gi|424692415|ref|ZP_18128904.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV37]
gi|424696111|ref|ZP_18132476.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV41]
gi|424699534|ref|ZP_18135747.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV62]
gi|424704722|ref|ZP_18140816.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV63]
gi|424706898|ref|ZP_18142893.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV65]
gi|424717575|ref|ZP_18146857.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV68]
gi|424720417|ref|ZP_18149520.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV72]
gi|424726103|ref|ZP_18154787.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV73]
gi|424734050|ref|ZP_18162600.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV81]
gi|424738079|ref|ZP_18166524.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV85]
gi|424755412|ref|ZP_18183289.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV93]
gi|424757359|ref|ZP_18185108.1| RNA-binding protein, YhbY family [Enterococcus faecalis R508]
gi|227073158|gb|EEI11121.1| RNA-binding protein [Enterococcus faecalis TX0104]
gi|256992254|gb|EEU79556.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|402352577|gb|EJU87422.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV103]
gi|402357396|gb|EJU92106.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV116]
gi|402360423|gb|EJU95023.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV31]
gi|402366219|gb|EJV00613.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV129]
gi|402366737|gb|EJV01098.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV25]
gi|402375828|gb|EJV09799.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV62]
gi|402378145|gb|EJV12024.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV37]
gi|402378564|gb|EJV12406.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV41]
gi|402381159|gb|EJV14872.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV63]
gi|402384279|gb|EJV17838.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV68]
gi|402386584|gb|EJV20089.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV65]
gi|402389752|gb|EJV23137.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV73]
gi|402390668|gb|EJV23997.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV81]
gi|402393489|gb|EJV26713.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV72]
gi|402400960|gb|EJV33764.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV93]
gi|402403485|gb|EJV36152.1| RNA-binding protein, YhbY family [Enterococcus faecalis ERV85]
gi|402407201|gb|EJV39736.1| RNA-binding protein, YhbY family [Enterococcus faecalis R508]
Length = 103
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL K+K+ L S AH L + VGK G+ D ++T E LE EL+KI + +
Sbjct: 2 KLRGKQKRYLRSQAHHLQPIFQ---VGKGGLNDAMITQIDEALEKRELIKITLLQNTDEI 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E+V ++L A VV IG+ +++++PS
Sbjct: 59 AEEVAEELTAAIHCDVVQIIGRVLVLFKPS 88
>gi|157693066|ref|YP_001487528.1| RNA binding protein [Bacillus pumilus SAFR-032]
gi|157681824|gb|ABV62968.1| possible RNA binding protein [Bacillus pumilus SAFR-032]
Length = 96
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L + AH L + VGK GV D + E LE ELLK+ I + C + +V
Sbjct: 5 KQKRFLRAKAHHLSPIFQ---VGKGGVNDNMTKQISEALEVRELLKVSILQNCDEDKTEV 61
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
K L + T + +V IG +++Y+ S
Sbjct: 62 AKALVKGTKAELVQTIGNVIVLYKES 87
>gi|226311577|ref|YP_002771471.1| hypothetical protein BBR47_19900 [Brevibacillus brevis NBRC 100599]
gi|398818041|ref|ZP_10576640.1| putative RNA-binding protein, YhbY family [Brevibacillus sp. BC25]
gi|226094525|dbj|BAH42967.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
gi|398028839|gb|EJL22342.1| putative RNA-binding protein, YhbY family [Brevibacillus sp. BC25]
Length = 96
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + ++T E LE EL+K+ I + +
Sbjct: 2 LTGKQKRFLRAEAHHLTPIFQ---VGKGGVNENMITQIKEALEVRELIKVAILQNNNDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V + L G+ +V IG TV++Y+ S
Sbjct: 59 HQVAEDLAAGAGAELVQLIGHTVVLYKES 87
>gi|407474431|ref|YP_006788831.1| RNA-binding protein [Clostridium acidurici 9a]
gi|407050939|gb|AFS78984.1| putative RNA-binding protein [Clostridium acidurici 9a]
Length = 98
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S AH++ + +GK GV++ + E LEA EL+KIKI E
Sbjct: 2 ITSKQRSYLKSLAHNIEPLFQ---LGKYGVSENFLKQVDEALEARELIKIKILNNSELEA 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++V ++ E + V IG +IYR S + K+E
Sbjct: 59 KEVANEISEQLRAEFVQSIGNRFVIYRESKEKKKIE 94
>gi|374295608|ref|YP_005045799.1| putative RNA-binding protein, YhbY family [Clostridium clariflavum
DSM 19732]
gi|359825102|gb|AEV67875.1| putative RNA-binding protein, YhbY family [Clostridium clariflavum
DSM 19732]
Length = 96
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S A+++ + VGK G+ + +V F E LEA EL+K+ + + ++
Sbjct: 2 LTGKQRSYLRSLANNIEPIFQ---VGKGGINENMVKQFNEALEARELIKVSVLKNSADDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + E TGS +V IG ++Y+ S
Sbjct: 59 RTICNEAAELTGSEIVQVIGNKFVLYKES 87
>gi|424780546|ref|ZP_18207419.1| RNA binding protein [Catellicoccus marimammalium M35/04/3]
gi|422842948|gb|EKU27395.1| RNA binding protein [Catellicoccus marimammalium M35/04/3]
Length = 102
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L S AH + + +GK+GV+ ++ + LE EL K+ + + EDV
Sbjct: 5 KQKRYLRSQAHHMQPIFQ---IGKNGVSPELLQQVDDALEKRELFKVSLLQNTDEIAEDV 61
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ EE G+ VV IG+ +++YRPS
Sbjct: 62 AEIFEEELGAQVVQIIGRILVVYRPS 87
>gi|16800592|ref|NP_470860.1| hypothetical protein lin1524 [Listeria innocua Clip11262]
gi|423100571|ref|ZP_17088278.1| RNA-binding protein, YhbY family [Listeria innocua ATCC 33091]
gi|16413997|emb|CAC96755.1| lin1524 [Listeria innocua Clip11262]
gi|370792795|gb|EHN60638.1| RNA-binding protein, YhbY family [Listeria innocua ATCC 33091]
Length = 96
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT +K+ L AH++ + VGK V+ ++ E LEA EL+KI I + C +
Sbjct: 2 LTATQKRFLRKEAHTIQPIFQ---VGKGSVSPNLIIQVKEALEARELIKISILQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
+ V +++ G+ +V IG+T+I+Y+ S+ + ++
Sbjct: 59 QTVAEKISTRAGADIVQVIGRTIILYKQSVNKQQI 93
>gi|417935290|ref|ZP_12578610.1| RNA-binding protein, YhbY family [Streptococcus mitis bv. 2 str.
F0392]
gi|340771860|gb|EGR94375.1| RNA-binding protein, YhbY family [Streptococcus mitis bv. 2 str.
F0392]
Length = 103
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHTLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILFKQS 88
>gi|325979019|ref|YP_004288735.1| putative RNA-binding protein containing KH domain [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|386338496|ref|YP_006034665.1| putative RNA-binding protein containing KH domain [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|325178947|emb|CBZ48991.1| putative RNA-binding protein containing KH domain [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|334281132|dbj|BAK28706.1| putative RNA-binding protein containing KH domain [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 110
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 23 PLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHR 82
P + LT K++ L S AHS+ ++ +GK+G+ D + TS L+A EL+K+ + +
Sbjct: 2 PDMIIMLTSKQRAFLKSQAHSMKPIVQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQ 58
Query: 83 TCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ +V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 NTDEDIHEVAEILEDEIGCDTVLKIGRILILYKES 93
>gi|15901580|ref|NP_346184.1| hypothetical protein SP_1748 [Streptococcus pneumoniae TIGR4]
gi|15903635|ref|NP_359185.1| hypothetical protein spr1593 [Streptococcus pneumoniae R6]
gi|111657473|ref|ZP_01408220.1| hypothetical protein SpneT_02001324 [Streptococcus pneumoniae
TIGR4]
gi|116515641|ref|YP_817011.1| hypothetical protein SPD_1558 [Streptococcus pneumoniae D39]
gi|148984191|ref|ZP_01817486.1| hypothetical protein CGSSp3BS71_03182 [Streptococcus pneumoniae
SP3-BS71]
gi|148989410|ref|ZP_01820778.1| hypothetical protein CGSSp6BS73_07929 [Streptococcus pneumoniae
SP6-BS73]
gi|148994933|ref|ZP_01823935.1| hypothetical protein CGSSp9BS68_00657 [Streptococcus pneumoniae
SP9-BS68]
gi|148997804|ref|ZP_01825368.1| hypothetical protein CGSSp11BS70_02814 [Streptococcus pneumoniae
SP11-BS70]
gi|149002054|ref|ZP_01827008.1| hypothetical protein CGSSp14BS69_10096 [Streptococcus pneumoniae
SP14-BS69]
gi|149006584|ref|ZP_01830283.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
SP18-BS74]
gi|149011382|ref|ZP_01832629.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
SP19-BS75]
gi|149020831|ref|ZP_01835360.1| hypothetical protein CGSSp23BS72_02299 [Streptococcus pneumoniae
SP23-BS72]
gi|168483287|ref|ZP_02708239.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gi|168486391|ref|ZP_02710899.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1087-00]
gi|168488532|ref|ZP_02712731.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
gi|168491369|ref|ZP_02715512.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC0288-04]
gi|168493657|ref|ZP_02717800.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC3059-06]
gi|168575060|ref|ZP_02721023.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
gi|169832667|ref|YP_001695123.1| hypothetical protein SPH_1857 [Streptococcus pneumoniae
Hungary19A-6]
gi|182684692|ref|YP_001836439.1| hypothetical protein SPCG_1722 [Streptococcus pneumoniae CGSP14]
gi|194397685|ref|YP_002038358.1| hypothetical protein SPG_1653 [Streptococcus pneumoniae G54]
gi|221232483|ref|YP_002511636.1| hypothetical protein SPN23F_17550 [Streptococcus pneumoniae ATCC
700669]
gi|225855179|ref|YP_002736691.1| hypothetical protein SPJ_1644 [Streptococcus pneumoniae JJA]
gi|225857360|ref|YP_002738871.1| hypothetical protein SPP_1765 [Streptococcus pneumoniae P1031]
gi|225859500|ref|YP_002741010.1| hypothetical protein SP70585_1787 [Streptococcus pneumoniae 70585]
gi|225861570|ref|YP_002743079.1| hypothetical protein SPT_1686 [Streptococcus pneumoniae
Taiwan19F-14]
gi|237649160|ref|ZP_04523412.1| hypothetical protein SpneC1_00140 [Streptococcus pneumoniae CCRI
1974]
gi|237820724|ref|ZP_04596569.1| hypothetical protein SpneC19_00060 [Streptococcus pneumoniae CCRI
1974M2]
gi|270293290|ref|ZP_06199499.1| probable RNA-binding protein YqeI [Streptococcus sp. M143]
gi|289168471|ref|YP_003446740.1| hypothetical protein smi_1638 [Streptococcus mitis B6]
gi|293364880|ref|ZP_06611597.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|298230644|ref|ZP_06964325.1| RNA-binding protein [Streptococcus pneumoniae str. Canada MDR_19F]
gi|298254888|ref|ZP_06978474.1| RNA-binding protein [Streptococcus pneumoniae str. Canada MDR_19A]
gi|298503493|ref|YP_003725433.1| RNA-binding protein [Streptococcus pneumoniae TCH8431/19A]
gi|303254360|ref|ZP_07340468.1| hypothetical protein CGSSpBS455_02729 [Streptococcus pneumoniae
BS455]
gi|303258685|ref|ZP_07344665.1| hypothetical protein CGSSp9vBS293_06139 [Streptococcus pneumoniae
SP-BS293]
gi|303261848|ref|ZP_07347794.1| hypothetical protein CGSSp14BS292_10559 [Streptococcus pneumoniae
SP14-BS292]
gi|303263711|ref|ZP_07349633.1| hypothetical protein CGSSpBS397_07859 [Streptococcus pneumoniae
BS397]
gi|303266651|ref|ZP_07352535.1| hypothetical protein CGSSpBS457_08379 [Streptococcus pneumoniae
BS457]
gi|303268541|ref|ZP_07354334.1| hypothetical protein CGSSpBS458_05924 [Streptococcus pneumoniae
BS458]
gi|306825773|ref|ZP_07459112.1| RNA-binding protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|307068374|ref|YP_003877340.1| hypothetical protein SPAP_1754 [Streptococcus pneumoniae AP200]
gi|307127962|ref|YP_003879993.1| hypothetical protein SP670_1841 [Streptococcus pneumoniae 670-6B]
gi|307703132|ref|ZP_07640078.1| CRS1 / YhbY domain protein [Streptococcus oralis ATCC 35037]
gi|307704299|ref|ZP_07641217.1| CRS1 / YhbY domain protein [Streptococcus mitis SK597]
gi|307706092|ref|ZP_07642911.1| CRS1 / YhbY domain protein [Streptococcus mitis SK321]
gi|307710603|ref|ZP_07647037.1| CRS1 / YhbY domain protein [Streptococcus mitis SK564]
gi|315612640|ref|ZP_07887552.1| RNA-binding protein [Streptococcus sanguinis ATCC 49296]
gi|322374822|ref|ZP_08049336.1| putative RNA-binding protein YqeI [Streptococcus sp. C300]
gi|331266920|ref|YP_004326550.1| RNA-binding protein [Streptococcus oralis Uo5]
gi|358464172|ref|ZP_09174138.1| RNA-binding protein, YhbY family [Streptococcus sp. oral taxon 058
str. F0407]
gi|383937690|ref|ZP_09990934.1| RNA-binding protein, YhbY family [Streptococcus pseudopneumoniae
SK674]
gi|385263060|ref|ZP_10041157.1| RNA-binding protein, YhbY family [Streptococcus sp. SK643]
gi|387757962|ref|YP_006064941.1| hypothetical protein SPNOXC_15380 [Streptococcus pneumoniae OXC141]
gi|387759859|ref|YP_006066837.1| hypothetical protein SPNINV200_15710 [Streptococcus pneumoniae
INV200]
gi|387788789|ref|YP_006253857.1| hypothetical protein MYY_1667 [Streptococcus pneumoniae ST556]
gi|405760390|ref|YP_006700986.1| hypothetical protein SPNA45_00498 [Streptococcus pneumoniae SPNA45]
gi|406577138|ref|ZP_11052756.1| RNA-binding protein [Streptococcus sp. GMD6S]
gi|410477115|ref|YP_006743874.1| hypothetical protein HMPREF1038_01726 [Streptococcus pneumoniae
gamPNI0373]
gi|414157994|ref|ZP_11414288.1| hypothetical protein HMPREF9188_00562 [Streptococcus sp. F0441]
gi|415700215|ref|ZP_11457929.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 459-5]
gi|415750138|ref|ZP_11478082.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae SV35]
gi|415752953|ref|ZP_11479935.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae SV36]
gi|417313224|ref|ZP_12099936.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA04375]
gi|417677480|ref|ZP_12326887.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17545]
gi|417679715|ref|ZP_12329111.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17570]
gi|417687198|ref|ZP_12336472.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41301]
gi|417694622|ref|ZP_12343809.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47901]
gi|417696912|ref|ZP_12346090.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47368]
gi|417699128|ref|ZP_12348299.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41317]
gi|417793556|ref|ZP_12440830.1| RNA-binding protein, YhbY family [Streptococcus oralis SK255]
gi|417847288|ref|ZP_12493256.1| RNA-binding protein, YhbY family [Streptococcus mitis SK1073]
gi|417849990|ref|ZP_12495905.1| RNA-binding protein, YhbY family [Streptococcus mitis SK1080]
gi|417915752|ref|ZP_12559357.1| RNA-binding protein, YhbY family [Streptococcus mitis bv. 2 str.
SK95]
gi|417922926|ref|ZP_12566409.1| RNA-binding protein, YhbY family [Streptococcus mitis SK569]
gi|417937856|ref|ZP_12581156.1| RNA-binding protein, YhbY family [Streptococcus infantis SK970]
gi|418074576|ref|ZP_12711827.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA11184]
gi|418076965|ref|ZP_12714198.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47502]
gi|418079178|ref|ZP_12716400.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 4027-06]
gi|418081376|ref|ZP_12718586.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 6735-05]
gi|418083553|ref|ZP_12720750.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44288]
gi|418085737|ref|ZP_12722916.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47281]
gi|418087419|ref|ZP_12724588.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47033]
gi|418090105|ref|ZP_12727259.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA43265]
gi|418092353|ref|ZP_12729493.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44452]
gi|418094539|ref|ZP_12731666.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA49138]
gi|418096858|ref|ZP_12733969.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA16531]
gi|418099070|ref|ZP_12736167.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 6901-05]
gi|418101206|ref|ZP_12738289.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 7286-06]
gi|418103439|ref|ZP_12740511.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae NP070]
gi|418105854|ref|ZP_12742910.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44500]
gi|418108180|ref|ZP_12745217.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41410]
gi|418110718|ref|ZP_12747737.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA49447]
gi|418113093|ref|ZP_12750093.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41538]
gi|418115264|ref|ZP_12752250.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 5787-06]
gi|418117422|ref|ZP_12754391.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 6963-05]
gi|418119197|ref|ZP_12756154.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA18523]
gi|418121804|ref|ZP_12758747.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44194]
gi|418124078|ref|ZP_12761009.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44378]
gi|418126402|ref|ZP_12763307.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44511]
gi|418128622|ref|ZP_12765515.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae NP170]
gi|418130896|ref|ZP_12767779.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA07643]
gi|418133208|ref|ZP_12770078.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA11304]
gi|418134604|ref|ZP_12771461.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA11426]
gi|418137819|ref|ZP_12774657.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA11663]
gi|418140073|ref|ZP_12776898.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13338]
gi|418142263|ref|ZP_12779075.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13455]
gi|418144918|ref|ZP_12781712.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13494]
gi|418146989|ref|ZP_12783767.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13637]
gi|418149105|ref|ZP_12785867.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13856]
gi|418151252|ref|ZP_12787998.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA14798]
gi|418153490|ref|ZP_12790228.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA16121]
gi|418155738|ref|ZP_12792465.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA16242]
gi|418158050|ref|ZP_12794766.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA16833]
gi|418162792|ref|ZP_12799473.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17328]
gi|418165042|ref|ZP_12801710.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17371]
gi|418167350|ref|ZP_12804004.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17971]
gi|418169849|ref|ZP_12806490.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA19077]
gi|418171882|ref|ZP_12808506.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA19451]
gi|418174139|ref|ZP_12810751.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41277]
gi|418176538|ref|ZP_12813129.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41437]
gi|418178798|ref|ZP_12815381.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41565]
gi|418181103|ref|ZP_12817672.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41688]
gi|418183292|ref|ZP_12819849.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA43380]
gi|418185506|ref|ZP_12822046.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47283]
gi|418187726|ref|ZP_12824249.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47360]
gi|418189986|ref|ZP_12826498.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47373]
gi|418192188|ref|ZP_12828690.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47388]
gi|418194315|ref|ZP_12830804.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47439]
gi|418196403|ref|ZP_12832879.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47688]
gi|418198572|ref|ZP_12835030.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47778]
gi|418200754|ref|ZP_12837197.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47976]
gi|418202957|ref|ZP_12839386.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA52306]
gi|418214946|ref|ZP_12841680.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA54644]
gi|418217192|ref|ZP_12843872.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|418219475|ref|ZP_12846140.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae NP127]
gi|418221781|ref|ZP_12848434.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47751]
gi|418223945|ref|ZP_12850585.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 5185-06]
gi|418226136|ref|ZP_12852764.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae NP112]
gi|418228252|ref|ZP_12854869.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 3063-00]
gi|418230521|ref|ZP_12857120.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae EU-NP01]
gi|418232746|ref|ZP_12859332.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA07228]
gi|418234948|ref|ZP_12861524.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA08780]
gi|418237201|ref|ZP_12863767.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA19690]
gi|418239273|ref|ZP_12865824.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|418968498|ref|ZP_13520088.1| RNA-binding protein, YhbY family [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|419423707|ref|ZP_13963920.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA43264]
gi|419425686|ref|ZP_13965882.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 7533-05]
gi|419427798|ref|ZP_13967979.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 5652-06]
gi|419429944|ref|ZP_13970108.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA11856]
gi|419432123|ref|ZP_13972256.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae EU-NP05]
gi|419434025|ref|ZP_13974143.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA40183]
gi|419436542|ref|ZP_13976629.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 8190-05]
gi|419438784|ref|ZP_13978852.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13499]
gi|419440932|ref|ZP_13980977.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA40410]
gi|419443163|ref|ZP_13983189.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13224]
gi|419445249|ref|ZP_13985264.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA19923]
gi|419447405|ref|ZP_13987410.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 7879-04]
gi|419449530|ref|ZP_13989526.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 4075-00]
gi|419450875|ref|ZP_13990861.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae EU-NP02]
gi|419453863|ref|ZP_13993833.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae EU-NP03]
gi|419456098|ref|ZP_13996055.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae EU-NP04]
gi|419458337|ref|ZP_13998279.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA02254]
gi|419460560|ref|ZP_14000488.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA02270]
gi|419462909|ref|ZP_14002812.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA02714]
gi|419465216|ref|ZP_14005107.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA04175]
gi|419467365|ref|ZP_14007246.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA05248]
gi|419469548|ref|ZP_14009416.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA06083]
gi|419471634|ref|ZP_14011493.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA07914]
gi|419473807|ref|ZP_14013656.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13430]
gi|419476079|ref|ZP_14015915.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA14688]
gi|419478388|ref|ZP_14018211.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA18068]
gi|419480587|ref|ZP_14020391.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA19101]
gi|419482785|ref|ZP_14022572.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA40563]
gi|419484977|ref|ZP_14024752.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA43257]
gi|419487225|ref|ZP_14026987.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44128]
gi|419489100|ref|ZP_14028849.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44386]
gi|419491646|ref|ZP_14031384.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47179]
gi|419493874|ref|ZP_14033599.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47210]
gi|419495932|ref|ZP_14035649.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47461]
gi|419498115|ref|ZP_14037822.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47522]
gi|419500292|ref|ZP_14039986.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47597]
gi|419502398|ref|ZP_14042082.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47628]
gi|419504482|ref|ZP_14044150.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47760]
gi|419506629|ref|ZP_14046290.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA49194]
gi|419508844|ref|ZP_14048495.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA49542]
gi|419511010|ref|ZP_14050651.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae NP141]
gi|419513144|ref|ZP_14052776.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA05578]
gi|419515254|ref|ZP_14054879.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae England14-9]
gi|419517351|ref|ZP_14056967.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA02506]
gi|419519456|ref|ZP_14059062.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA08825]
gi|419521680|ref|ZP_14061275.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA05245]
gi|419524057|ref|ZP_14063632.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13723]
gi|419526462|ref|ZP_14066020.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA14373]
gi|419528085|ref|ZP_14067628.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17719]
gi|419530917|ref|ZP_14070443.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA40028]
gi|419532945|ref|ZP_14072460.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47794]
gi|419535211|ref|ZP_14074710.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17457]
gi|419767748|ref|ZP_14293895.1| RNA-binding protein, YhbY family [Streptococcus mitis SK579]
gi|419777869|ref|ZP_14303771.1| RNA-binding protein, YhbY family [Streptococcus oralis SK10]
gi|421207181|ref|ZP_15664233.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2090008]
gi|421209515|ref|ZP_15666528.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070005]
gi|421211616|ref|ZP_15668598.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070035]
gi|421213685|ref|ZP_15670639.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070108]
gi|421215846|ref|ZP_15672767.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070109]
gi|421218400|ref|ZP_15675294.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070335]
gi|421220832|ref|ZP_15677671.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070425]
gi|421223086|ref|ZP_15679868.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070531]
gi|421225585|ref|ZP_15682323.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070768]
gi|421227943|ref|ZP_15684645.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2072047]
gi|421230359|ref|ZP_15687023.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2061376]
gi|421232450|ref|ZP_15689091.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2080076]
gi|421234636|ref|ZP_15691254.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2061617]
gi|421236836|ref|ZP_15693433.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2071004]
gi|421239078|ref|ZP_15695642.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2071247]
gi|421241210|ref|ZP_15697755.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2080913]
gi|421243680|ref|ZP_15700192.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2081074]
gi|421245584|ref|ZP_15702082.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2081685]
gi|421248019|ref|ZP_15704497.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2082170]
gi|421249978|ref|ZP_15706435.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2082239]
gi|421266745|ref|ZP_15717625.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae SPAR27]
gi|421268908|ref|ZP_15719777.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae SPAR95]
gi|421271159|ref|ZP_15722013.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae SPAR48]
gi|421273404|ref|ZP_15724244.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae SPAR55]
gi|421275459|ref|ZP_15726288.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA52612]
gi|421279525|ref|ZP_15730331.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17301]
gi|421281735|ref|ZP_15732532.1| hypothetical protein SPAR155_1688 [Streptococcus pneumoniae
GA04672]
gi|421283891|ref|ZP_15734677.1| hypothetical protein SPAR151_1657 [Streptococcus pneumoniae
GA04216]
gi|421285821|ref|ZP_15736597.1| hypothetical protein SPAR162_1626 [Streptococcus pneumoniae
GA60190]
gi|421288014|ref|ZP_15738777.1| hypothetical protein SPAR163_1495 [Streptococcus pneumoniae
GA58771]
gi|421290310|ref|ZP_15741060.1| hypothetical protein SPAR157_1657 [Streptococcus pneumoniae
GA54354]
gi|421292618|ref|ZP_15743352.1| hypothetical protein SPAR159_1819 [Streptococcus pneumoniae
GA56348]
gi|421294825|ref|ZP_15745546.1| hypothetical protein SPAR158_1728 [Streptococcus pneumoniae
GA56113]
gi|421296581|ref|ZP_15747290.1| hypothetical protein SPAR160_1290 [Streptococcus pneumoniae
GA58581]
gi|421299210|ref|ZP_15749897.1| hypothetical protein SPAR161_1728 [Streptococcus pneumoniae
GA60080]
gi|421301602|ref|ZP_15752272.1| hypothetical protein SPAR61_1935 [Streptococcus pneumoniae GA19998]
gi|421302785|ref|ZP_15753449.1| hypothetical protein SPAR47_0911 [Streptococcus pneumoniae GA17484]
gi|421305702|ref|ZP_15756356.1| hypothetical protein SPAR169_1766 [Streptococcus pneumoniae
GA62331]
gi|421307942|ref|ZP_15758584.1| hypothetical protein SPAR166_1733 [Streptococcus pneumoniae
GA60132]
gi|421310150|ref|ZP_15760775.1| hypothetical protein SPAR168_1666 [Streptococcus pneumoniae
GA62681]
gi|421312557|ref|ZP_15763159.1| hypothetical protein SPAR167_1869 [Streptococcus pneumoniae
GA58981]
gi|421314622|ref|ZP_15765209.1| hypothetical protein SPAR100_1629 [Streptococcus pneumoniae
GA47562]
gi|421488008|ref|ZP_15935406.1| RNA-binding protein, YhbY family [Streptococcus oralis SK304]
gi|444387593|ref|ZP_21185612.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae
PCS125219]
gi|444389153|ref|ZP_21187070.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae
PCS70012]
gi|444392012|ref|ZP_21189772.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae
PCS81218]
gi|444394830|ref|ZP_21192380.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0002]
gi|444398199|ref|ZP_21195682.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0006]
gi|444399304|ref|ZP_21196772.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0007]
gi|444402502|ref|ZP_21199665.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0008]
gi|444405545|ref|ZP_21202420.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0009]
gi|444407817|ref|ZP_21204484.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0010]
gi|444409511|ref|ZP_21206101.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0076]
gi|444412893|ref|ZP_21209212.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0153]
gi|444415695|ref|ZP_21211924.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0199]
gi|444417247|ref|ZP_21213300.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0360]
gi|444419621|ref|ZP_21215469.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0427]
gi|444421885|ref|ZP_21217553.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0446]
gi|14973244|gb|AAK75824.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
gi|15459260|gb|AAL00396.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076217|gb|ABJ53937.1| conserved hypothetical protein TIGR00253 [Streptococcus pneumoniae
D39]
gi|147756303|gb|EDK63345.1| hypothetical protein CGSSp11BS70_02814 [Streptococcus pneumoniae
SP11-BS70]
gi|147759863|gb|EDK66853.1| hypothetical protein CGSSp14BS69_10096 [Streptococcus pneumoniae
SP14-BS69]
gi|147761882|gb|EDK68845.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
SP18-BS74]
gi|147764372|gb|EDK71303.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae
SP19-BS75]
gi|147923480|gb|EDK74593.1| hypothetical protein CGSSp3BS71_03182 [Streptococcus pneumoniae
SP3-BS71]
gi|147925160|gb|EDK76240.1| hypothetical protein CGSSp6BS73_07929 [Streptococcus pneumoniae
SP6-BS73]
gi|147926935|gb|EDK77981.1| hypothetical protein CGSSp9BS68_00657 [Streptococcus pneumoniae
SP9-BS68]
gi|147930472|gb|EDK81455.1| hypothetical protein CGSSp23BS72_02299 [Streptococcus pneumoniae
SP23-BS72]
gi|168995169|gb|ACA35781.1| conserved hypothetical protein [Streptococcus pneumoniae
Hungary19A-6]
gi|172043218|gb|EDT51264.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gi|182630026|gb|ACB90974.1| hypothetical protein SPCG_1722 [Streptococcus pneumoniae CGSP14]
gi|183570573|gb|EDT91101.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1087-00]
gi|183572885|gb|EDT93413.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
gi|183574291|gb|EDT94819.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC0288-04]
gi|183576275|gb|EDT96803.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC3059-06]
gi|183578775|gb|EDT99303.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
gi|194357352|gb|ACF55800.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
gi|220674944|emb|CAR69521.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC
700669]
gi|225721845|gb|ACO17699.1| conserved hypothetical protein [Streptococcus pneumoniae 70585]
gi|225722528|gb|ACO18381.1| conserved hypothetical protein [Streptococcus pneumoniae JJA]
gi|225726268|gb|ACO22120.1| conserved hypothetical protein [Streptococcus pneumoniae P1031]
gi|225728084|gb|ACO23935.1| conserved hypothetical protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|270278139|gb|EFA23987.1| probable RNA-binding protein YqeI [Streptococcus sp. M143]
gi|288908038|emb|CBJ22878.1| conserved hypothetical protein [Streptococcus mitis B6]
gi|291316330|gb|EFE56766.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|298239088|gb|ADI70219.1| RNA-binding protein [Streptococcus pneumoniae TCH8431/19A]
gi|301800551|emb|CBW33191.1| RNA binding protein [Streptococcus pneumoniae OXC141]
gi|301802448|emb|CBW35204.1| conserved hypothetical protein [Streptococcus pneumoniae INV200]
gi|302598711|gb|EFL65749.1| hypothetical protein CGSSpBS455_02729 [Streptococcus pneumoniae
BS455]
gi|302636931|gb|EFL67420.1| hypothetical protein CGSSp14BS292_10559 [Streptococcus pneumoniae
SP14-BS292]
gi|302640186|gb|EFL70641.1| hypothetical protein CGSSpBS293_06139 [Streptococcus pneumoniae
SP-BS293]
gi|302641936|gb|EFL72290.1| hypothetical protein CGSSpBS458_05924 [Streptococcus pneumoniae
BS458]
gi|302643813|gb|EFL74076.1| hypothetical protein CGSSpBS457_08379 [Streptococcus pneumoniae
BS457]
gi|302646749|gb|EFL76974.1| hypothetical protein CGSSpBS397_07859 [Streptococcus pneumoniae
BS397]
gi|304432134|gb|EFM35111.1| RNA-binding protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|306409911|gb|ADM85338.1| hypothetical protein SPAP_1754 [Streptococcus pneumoniae AP200]
gi|306485024|gb|ADM91893.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
gi|307618492|gb|EFN97640.1| CRS1 / YhbY domain protein [Streptococcus mitis SK321]
gi|307618648|gb|EFN97790.1| CRS1 / YhbY domain protein [Streptococcus mitis SK564]
gi|307622135|gb|EFO01154.1| CRS1 / YhbY domain protein [Streptococcus mitis SK597]
gi|307623207|gb|EFO02198.1| CRS1 / YhbY domain protein [Streptococcus oralis ATCC 35037]
gi|315315227|gb|EFU63267.1| RNA-binding protein [Streptococcus sanguinis ATCC 49296]
gi|321280322|gb|EFX57361.1| putative RNA-binding protein YqeI [Streptococcus sp. C300]
gi|326683592|emb|CBZ01210.1| predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Streptococcus oralis Uo5]
gi|327389932|gb|EGE88277.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA04375]
gi|332072580|gb|EGI83063.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17570]
gi|332072921|gb|EGI83402.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17545]
gi|332074088|gb|EGI84566.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41301]
gi|332199774|gb|EGJ13849.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41317]
gi|332200310|gb|EGJ14383.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47368]
gi|332201171|gb|EGJ15242.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47901]
gi|334272695|gb|EGL91055.1| RNA-binding protein, YhbY family [Streptococcus oralis SK255]
gi|339455323|gb|EGP67930.1| RNA-binding protein, YhbY family [Streptococcus mitis SK1080]
gi|339456936|gb|EGP69517.1| RNA-binding protein, YhbY family [Streptococcus mitis SK1073]
gi|342832769|gb|EGU67059.1| RNA-binding protein, YhbY family [Streptococcus mitis bv. 2 str.
SK95]
gi|342837456|gb|EGU71641.1| RNA-binding protein, YhbY family [Streptococcus mitis SK569]
gi|343392120|gb|EGV04693.1| RNA-binding protein, YhbY family [Streptococcus infantis SK970]
gi|353746705|gb|EHD27365.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 4027-06]
gi|353747105|gb|EHD27763.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47502]
gi|353747177|gb|EHD27834.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA11184]
gi|353752115|gb|EHD32746.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 6735-05]
gi|353754773|gb|EHD35385.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44288]
gi|353756446|gb|EHD37047.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47281]
gi|353758435|gb|EHD39027.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47033]
gi|353761296|gb|EHD41868.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA43265]
gi|353763053|gb|EHD43610.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44452]
gi|353765035|gb|EHD45583.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA49138]
gi|353768579|gb|EHD49103.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA16531]
gi|353769052|gb|EHD49574.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 6901-05]
gi|353770706|gb|EHD51218.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 7286-06]
gi|353774740|gb|EHD55227.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae NP070]
gi|353776030|gb|EHD56509.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44500]
gi|353778457|gb|EHD58925.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41410]
gi|353781339|gb|EHD61784.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA49447]
gi|353783455|gb|EHD63884.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41538]
gi|353785348|gb|EHD65767.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 5787-06]
gi|353788103|gb|EHD68501.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 6963-05]
gi|353791149|gb|EHD71530.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA18523]
gi|353792640|gb|EHD73012.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44194]
gi|353795466|gb|EHD75814.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44511]
gi|353795898|gb|EHD76244.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44378]
gi|353799121|gb|EHD79444.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae NP170]
gi|353802220|gb|EHD82520.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA07643]
gi|353804496|gb|EHD84777.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13455]
gi|353804650|gb|EHD84930.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA11304]
gi|353805211|gb|EHD85486.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13494]
gi|353811441|gb|EHD91683.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13856]
gi|353812564|gb|EHD92799.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13637]
gi|353814462|gb|EHD94688.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA14798]
gi|353817041|gb|EHD97249.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA16121]
gi|353819987|gb|EHE00176.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA16242]
gi|353824498|gb|EHE04672.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA16833]
gi|353826854|gb|EHE07011.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17328]
gi|353828516|gb|EHE08654.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17971]
gi|353828874|gb|EHE09010.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17371]
gi|353833828|gb|EHE13936.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA19077]
gi|353835619|gb|EHE15713.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA19451]
gi|353838095|gb|EHE18176.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41277]
gi|353840609|gb|EHE20673.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41437]
gi|353842857|gb|EHE22903.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41565]
gi|353843175|gb|EHE23220.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA41688]
gi|353847721|gb|EHE27741.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA43380]
gi|353848236|gb|EHE28252.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47283]
gi|353849711|gb|EHE29716.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47360]
gi|353853713|gb|EHE33694.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47373]
gi|353855274|gb|EHE35244.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47388]
gi|353857893|gb|EHE37855.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47439]
gi|353860414|gb|EHE40359.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47688]
gi|353861682|gb|EHE41617.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47778]
gi|353864295|gb|EHE44213.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47976]
gi|353867514|gb|EHE47409.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA52306]
gi|353869676|gb|EHE49557.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA54644]
gi|353870465|gb|EHE50338.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|353873835|gb|EHE53694.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae NP127]
gi|353875091|gb|EHE54945.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47751]
gi|353878743|gb|EHE58573.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 5185-06]
gi|353880647|gb|EHE60462.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 3063-00]
gi|353881333|gb|EHE61147.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae NP112]
gi|353885402|gb|EHE65191.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae EU-NP01]
gi|353886059|gb|EHE65843.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA07228]
gi|353886570|gb|EHE66352.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA08780]
gi|353891639|gb|EHE71393.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA19690]
gi|353892264|gb|EHE72013.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353900774|gb|EHE76325.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA11663]
gi|353901841|gb|EHE77371.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA11426]
gi|353904852|gb|EHE80302.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13338]
gi|357067200|gb|EHI77326.1| RNA-binding protein, YhbY family [Streptococcus sp. oral taxon 058
str. F0407]
gi|379138531|gb|AFC95322.1| hypothetical protein MYY_1667 [Streptococcus pneumoniae ST556]
gi|379530001|gb|EHY95242.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA02254]
gi|379530341|gb|EHY95581.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA02714]
gi|379530696|gb|EHY95935.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA02270]
gi|379536816|gb|EHZ02002.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA04175]
gi|379537191|gb|EHZ02376.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13499]
gi|379538980|gb|EHZ04160.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA05245]
gi|379543112|gb|EHZ08264.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA05248]
gi|379544352|gb|EHZ09497.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA06083]
gi|379546350|gb|EHZ11489.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA07914]
gi|379550122|gb|EHZ15224.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA11856]
gi|379550628|gb|EHZ15725.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13224]
gi|379550971|gb|EHZ16067.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13430]
gi|379556465|gb|EHZ21520.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA13723]
gi|379557102|gb|EHZ22149.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA14373]
gi|379558861|gb|EHZ23893.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA14688]
gi|379563372|gb|EHZ28376.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17457]
gi|379564900|gb|EHZ29895.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA18068]
gi|379566238|gb|EHZ31229.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17719]
gi|379569756|gb|EHZ34723.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA19101]
gi|379571326|gb|EHZ36284.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA40028]
gi|379572942|gb|EHZ37899.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA19923]
gi|379577026|gb|EHZ41950.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA40183]
gi|379578002|gb|EHZ42919.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA40410]
gi|379579377|gb|EHZ44284.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA40563]
gi|379581730|gb|EHZ46614.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA43257]
gi|379585594|gb|EHZ50450.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44128]
gi|379586279|gb|EHZ51133.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA43264]
gi|379586642|gb|EHZ51492.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA44386]
gi|379592447|gb|EHZ57263.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47210]
gi|379593008|gb|EHZ57823.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47179]
gi|379594018|gb|EHZ58829.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47461]
gi|379598948|gb|EHZ63733.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47522]
gi|379599600|gb|EHZ64383.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47597]
gi|379600611|gb|EHZ65392.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47628]
gi|379605465|gb|EHZ70216.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47794]
gi|379605870|gb|EHZ70620.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA47760]
gi|379608543|gb|EHZ73289.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA49194]
gi|379610798|gb|EHZ75528.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA49542]
gi|379612981|gb|EHZ77696.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 8190-05]
gi|379614945|gb|EHZ79655.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 7879-04]
gi|379617991|gb|EHZ82671.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 5652-06]
gi|379619147|gb|EHZ83821.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 7533-05]
gi|379622148|gb|EHZ86784.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 4075-00]
gi|379622580|gb|EHZ87214.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae EU-NP02]
gi|379625933|gb|EHZ90559.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae EU-NP03]
gi|379628074|gb|EHZ92680.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae EU-NP04]
gi|379629204|gb|EHZ93805.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae EU-NP05]
gi|379631613|gb|EHZ96190.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae NP141]
gi|379634309|gb|EHZ98874.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA05578]
gi|379635803|gb|EIA00362.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae England14-9]
gi|379639424|gb|EIA03968.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA02506]
gi|379641293|gb|EIA05831.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA08825]
gi|381308600|gb|EIC49443.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae SV36]
gi|381314911|gb|EIC55677.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 459-5]
gi|381318432|gb|EIC59157.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae SV35]
gi|383187622|gb|EIC80066.1| RNA-binding protein, YhbY family [Streptococcus oralis SK10]
gi|383352602|gb|EID30287.1| RNA-binding protein, YhbY family [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383352790|gb|EID30423.1| RNA-binding protein, YhbY family [Streptococcus mitis SK579]
gi|383715418|gb|EID71380.1| RNA-binding protein, YhbY family [Streptococcus pseudopneumoniae
SK674]
gi|385189035|gb|EIF36505.1| RNA-binding protein, YhbY family [Streptococcus sp. SK643]
gi|395572724|gb|EJG33319.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070035]
gi|395573611|gb|EJG34201.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070005]
gi|395574517|gb|EJG35095.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2090008]
gi|395578916|gb|EJG39426.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070108]
gi|395580053|gb|EJG40548.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070109]
gi|395583169|gb|EJG43618.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070335]
gi|395586742|gb|EJG47109.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070425]
gi|395587066|gb|EJG47428.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070531]
gi|395589072|gb|EJG49394.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2070768]
gi|395593885|gb|EJG54127.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2061376]
gi|395594227|gb|EJG54467.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2072047]
gi|395594953|gb|EJG55188.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2080076]
gi|395600490|gb|EJG60647.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2061617]
gi|395600721|gb|EJG60876.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2071247]
gi|395601599|gb|EJG61746.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2071004]
gi|395606329|gb|EJG66436.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2081074]
gi|395607588|gb|EJG67685.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2080913]
gi|395608111|gb|EJG68207.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2081685]
gi|395612893|gb|EJG72927.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2082170]
gi|395613672|gb|EJG73700.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae 2082239]
gi|395866813|gb|EJG77941.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae SPAR27]
gi|395867373|gb|EJG78497.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae SPAR48]
gi|395869162|gb|EJG80278.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae SPAR95]
gi|395873423|gb|EJG84515.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA52612]
gi|395873835|gb|EJG84925.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae SPAR55]
gi|395879018|gb|EJG90080.1| CRS1 / YhbY domain protein [Streptococcus pneumoniae GA17301]
gi|395880577|gb|EJG91629.1| hypothetical protein SPAR151_1657 [Streptococcus pneumoniae
GA04216]
gi|395881000|gb|EJG92051.1| hypothetical protein SPAR155_1688 [Streptococcus pneumoniae
GA04672]
gi|395885808|gb|EJG96829.1| hypothetical protein SPAR162_1626 [Streptococcus pneumoniae
GA60190]
gi|395886577|gb|EJG97593.1| hypothetical protein SPAR163_1495 [Streptococcus pneumoniae
GA58771]
gi|395887995|gb|EJG99009.1| hypothetical protein SPAR157_1657 [Streptococcus pneumoniae
GA54354]
gi|395891925|gb|EJH02919.1| hypothetical protein SPAR159_1819 [Streptococcus pneumoniae
GA56348]
gi|395893394|gb|EJH04381.1| hypothetical protein SPAR158_1728 [Streptococcus pneumoniae
GA56113]
gi|395895454|gb|EJH06429.1| hypothetical protein SPAR160_1290 [Streptococcus pneumoniae
GA58581]
gi|395899162|gb|EJH10106.1| hypothetical protein SPAR61_1935 [Streptococcus pneumoniae GA19998]
gi|395900681|gb|EJH11619.1| hypothetical protein SPAR161_1728 [Streptococcus pneumoniae
GA60080]
gi|395901407|gb|EJH12343.1| hypothetical protein SPAR47_0911 [Streptococcus pneumoniae GA17484]
gi|395904660|gb|EJH15574.1| hypothetical protein SPAR169_1766 [Streptococcus pneumoniae
GA62331]
gi|395907327|gb|EJH18221.1| hypothetical protein SPAR166_1733 [Streptococcus pneumoniae
GA60132]
gi|395909411|gb|EJH20287.1| hypothetical protein SPAR167_1869 [Streptococcus pneumoniae
GA58981]
gi|395909765|gb|EJH20640.1| hypothetical protein SPAR168_1666 [Streptococcus pneumoniae
GA62681]
gi|395913307|gb|EJH24160.1| hypothetical protein SPAR100_1629 [Streptococcus pneumoniae
GA47562]
gi|400369970|gb|EJP22967.1| RNA-binding protein, YhbY family [Streptococcus oralis SK304]
gi|404277279|emb|CCM07788.1| conserved hypothetical protein [Streptococcus pneumoniae SPNA45]
gi|404460313|gb|EKA06583.1| RNA-binding protein [Streptococcus sp. GMD6S]
gi|406370060|gb|AFS43750.1| conserved hypothetical RNA-binding protein [Streptococcus
pneumoniae gamPNI0373]
gi|410870539|gb|EKS18496.1| hypothetical protein HMPREF9188_00562 [Streptococcus sp. F0441]
gi|429316587|emb|CCP36295.1| RNA binding protein [Streptococcus pneumoniae SPN034156]
gi|429319927|emb|CCP33246.1| RNA binding protein [Streptococcus pneumoniae SPN034183]
gi|429321744|emb|CCP35220.1| RNA binding protein [Streptococcus pneumoniae SPN994039]
gi|429323564|emb|CCP31261.1| RNA binding protein [Streptococcus pneumoniae SPN994038]
gi|444252471|gb|ELU58934.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae
PCS125219]
gi|444257753|gb|ELU64086.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae
PCS70012]
gi|444259448|gb|ELU65762.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0002]
gi|444260856|gb|ELU67164.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0006]
gi|444264171|gb|ELU70276.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae
PCS81218]
gi|444266358|gb|ELU72315.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0008]
gi|444268870|gb|ELU74694.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0007]
gi|444271413|gb|ELU77164.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0010]
gi|444273116|gb|ELU78797.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0009]
gi|444274132|gb|ELU79787.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0153]
gi|444279222|gb|ELU84628.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0199]
gi|444279360|gb|ELU84761.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0076]
gi|444284413|gb|ELU89561.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0360]
gi|444286443|gb|ELU91425.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0427]
gi|444288837|gb|ELU93726.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PNI0446]
Length = 103
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHTLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILFKQS 88
>gi|452975133|gb|EME74952.1| RNA-binding protein YqeI [Bacillus sonorensis L12]
Length = 96
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L AH L + VGK GV D ++ E LEA EL+K+ + + C
Sbjct: 2 LTGKQKRYLRKEAHHLSPIFQ---VGKGGVNDNMIKQISEALEARELIKVSVLQNCEQPK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++V + L + +V IG +++Y+ S
Sbjct: 59 DEVAEALTNGARAELVQTIGNIIVLYKES 87
>gi|296104891|ref|YP_003615037.1| putative RNA-binding protein [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295059350|gb|ADF64088.1| putative RNA-binding protein [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 110
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 15 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRDT 71
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 72 KNLIVEAIVRETGACNVQVIGKTLVLYRPT 101
>gi|357238212|ref|ZP_09125549.1| RNA-binding protein, YhbY family [Streptococcus ictaluri 707-05]
gi|356752935|gb|EHI70056.1| RNA-binding protein, YhbY family [Streptococcus ictaluri 707-05]
Length = 102
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS L+A EL+K+ + + +
Sbjct: 2 LTSKQRAFLKSEAHSLKPIVQ---IGKNGLNDQIKTSIRHALDARELIKVTLLQNTDETI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 59 HEVAETLEEEIGCDTVLKIGRILILYKVS 87
>gi|219670339|ref|YP_002460774.1| hypothetical protein Dhaf_4333 [Desulfitobacterium hafniense DCB-2]
gi|423076695|ref|ZP_17065403.1| RNA-binding protein, YhbY family [Desulfitobacterium hafniense DP7]
gi|219540599|gb|ACL22338.1| protein of unknown function UPF0044 [Desulfitobacterium hafniense
DCB-2]
gi|361852258|gb|EHL04524.1| RNA-binding protein, YhbY family [Desulfitobacterium hafniense DP7]
Length = 97
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K + SLG ++ L +GK GVT+ V+ ETLEA EL+K R P
Sbjct: 2 LTGKQK----GFLRSLGNEMDPILQIGKGGVTEAVIAQTDETLEARELIK---GRVLPNS 54
Query: 88 LEDV---VKQLEEATGSAVVSQIGQTVIIYRPS 117
+EDV +L E T + +V IG+ ++YR S
Sbjct: 55 MEDVQSAAAELAERTSAELVQVIGRNFLLYRES 87
>gi|418976171|ref|ZP_13524057.1| RNA-binding protein, YhbY family [Streptococcus mitis SK575]
gi|383351845|gb|EID29608.1| RNA-binding protein, YhbY family [Streptococcus mitis SK575]
Length = 103
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHTLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILFKQS 88
>gi|289669631|ref|ZP_06490706.1| RNA-binding protein YhbY [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 101
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + E LE +EL+K+K+
Sbjct: 5 LTSAQNRFLRGQAHDLKALLQT---GGKGVTPAFLAELEEVLERHELIKVKVASEDRETR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ +L E TGSA+V +IG I+YRPS
Sbjct: 62 DTLIAELIEQTGSALVQRIGHVAILYRPS 90
>gi|222152535|ref|YP_002561710.1| hypothetical protein SUB0355 [Streptococcus uberis 0140J]
gi|222113346|emb|CAR40949.1| conserved hypothetical protein [Streptococcus uberis 0140J]
Length = 102
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH L ++ +GK+G+ + + TS L+A EL+KI + + ++
Sbjct: 2 LTSKQRAFLKSEAHHLKPIVQ---IGKNGLNNQIKTSVRNALDARELIKITLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV LEE G V +IG+ +I+Y+ S
Sbjct: 59 NDVADILEEEIGCDTVLKIGRILILYKVS 87
>gi|160892671|ref|ZP_02073461.1| hypothetical protein CLOL250_00201 [Clostridium sp. L2-50]
gi|156865712|gb|EDO59143.1| RNA-binding protein, YhbY family [Clostridium sp. L2-50]
Length = 96
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L A ++ L +GKS +T S E LEA EL+KI + + C +
Sbjct: 1 MTSKQRAYLKGLAMNIDPILN---IGKSSLTPEFTQSVNEALEARELVKISVLKNCLDDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++ + E T S VV IG+ ++ YRPS K+E
Sbjct: 58 REMAAMIAERTKSEVVQVIGRKIVFYRPSKEHKKIE 93
>gi|169350471|ref|ZP_02867409.1| hypothetical protein CLOSPI_01239 [Clostridium spiroforme DSM 1552]
gi|169292791|gb|EDS74924.1| RNA-binding protein, YhbY family [Clostridium spiroforme DSM 1552]
Length = 95
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L H+L + +GK GV + LEA+EL+KIKI +C
Sbjct: 2 LTGKQKRYLRGIGHNLSAIFQ---IGKDGVHQTQIEGIDAALEAHELIKIKILESCGESK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++ T + VV +G+T+++YRPS
Sbjct: 59 NEVAIEISMKTKADVVQILGRTILLYRPS 87
>gi|404493261|ref|YP_006717367.1| RNA-binding protein YhbY [Pelobacter carbinolicus DSM 2380]
gi|77545319|gb|ABA88881.1| RNA-binding protein YhbY [Pelobacter carbinolicus DSM 2380]
Length = 103
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+ + L + H L + L+GK GV+ +++S E L +ELLKIK+ TCP +
Sbjct: 10 LTGKQVRHLRALGHHLKPVV---LIGKEGVSAALISSIDECLTRHELLKIKVLETCPLDR 66
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + T V +G+T++IYR +
Sbjct: 67 KEAADLIASETRGHVAQVLGRTILIYRAA 95
>gi|288906054|ref|YP_003431276.1| hypothetical protein GALLO_1863 [Streptococcus gallolyticus UCN34]
gi|306832094|ref|ZP_07465248.1| RNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|288732780|emb|CBI14354.1| Conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304425533|gb|EFM28651.1| RNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
Length = 104
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHS+ ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSQAHSMKPIVQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HEVAEILEDEIGCDTVLKIGRILILYKES 87
>gi|412339310|ref|YP_006968065.1| hypothetical protein BN112_2002 [Bordetella bronchiseptica 253]
gi|408769144|emb|CCJ53919.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
Length = 200
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P+ +LT +E+ +L S AH L L+G +G+TD V+ L A+EL+K++
Sbjct: 1 MPILELTSRERSDLRSAAHPL---RPVVLIGDNGLTDAVLKEIDLALTAHELIKVRAGGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
E ++ + + A V +G+T+I++RP L
Sbjct: 58 DREAREAMLATICDTLSCAAVHHLGKTLILFRPDL 92
>gi|289662668|ref|ZP_06484249.1| RNA-binding protein YhbY [Xanthomonas campestris pv. vasculorum
NCPPB 702]
Length = 101
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + E LE +EL+K+K+
Sbjct: 5 LTSAQNRFLRGQAHDLKALLQT---GGKGVTPAFLAELEEVLERHELIKVKVASEDRETR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ +L E TGSA+V +IG I+YRPS
Sbjct: 62 DALIAELIEQTGSALVQRIGHVAILYRPS 90
>gi|283797998|ref|ZP_06347151.1| putative RNA-binding protein YqeI [Clostridium sp. M62/1]
gi|291074299|gb|EFE11663.1| RNA-binding protein, YhbY family [Clostridium sp. M62/1]
gi|295091856|emb|CBK77963.1| conserved hypothetical protein TIGR00253 [Clostridium cf.
saccharolyticum K10]
gi|295115157|emb|CBL36004.1| conserved hypothetical protein TIGR00253 [butyrate-producing
bacterium SM4/1]
Length = 107
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 24 LPLP-----KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKI 78
+PLP +T K++ L A ++ + +GKS VT + + E LEA EL+K+
Sbjct: 1 MPLPADRGIDMTSKQRAYLKGLAMTIDPIFQ---IGKSSVTPELTAAVAEALEARELIKL 57
Query: 79 KIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
I + C + + V L E T S VV IG+ +++Y+P+
Sbjct: 58 SILKNCLDDGKSVAAVLAERTHSEVVQVIGKKIVLYKPA 96
>gi|228476961|ref|ZP_04061599.1| conserved hypothetical protein [Streptococcus salivarius SK126]
gi|322516196|ref|ZP_08069129.1| RNA-binding protein [Streptococcus vestibularis ATCC 49124]
gi|340399487|ref|YP_004728512.1| putative RNA-binding protein containing KH domain [Streptococcus
salivarius CCHSS3]
gi|387760688|ref|YP_006067665.1| hypothetical protein Ssal_00416 [Streptococcus salivarius 57.I]
gi|387784744|ref|YP_006070827.1| hypothetical protein SALIVA_1689 [Streptococcus salivarius JIM8777]
gi|418018488|ref|ZP_12658044.1| putative RNA-binding protein [Streptococcus salivarius M18]
gi|419706290|ref|ZP_14233816.1| Hypothetical protein PS4_73985 [Streptococcus salivarius PS4]
gi|421453057|ref|ZP_15902413.1| RNA binding protein (CRS1/YhbY family) [Streptococcus salivarius
K12]
gi|228250980|gb|EEK10151.1| conserved hypothetical protein [Streptococcus salivarius SK126]
gi|322125372|gb|EFX96727.1| RNA-binding protein [Streptococcus vestibularis ATCC 49124]
gi|338743480|emb|CCB93990.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Streptococcus salivarius CCHSS3]
gi|338745626|emb|CCB95992.1| uncharacterized conserved protein [Streptococcus salivarius
JIM8777]
gi|339291455|gb|AEJ52802.1| conserved hypothetical protein [Streptococcus salivarius 57.I]
gi|345527337|gb|EGX30648.1| putative RNA-binding protein [Streptococcus salivarius M18]
gi|383283960|gb|EIC81898.1| Hypothetical protein PS4_73985 [Streptococcus salivarius PS4]
gi|400181366|gb|EJO15633.1| RNA binding protein (CRS1/YhbY family) [Streptococcus salivarius
K12]
Length = 105
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 3 LTSKQRAFLKSEAHTLKPIVQ---IGKNGLNDHIKTSVRNALDARELIKVTLLQNTMEDI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 HEVAEILEEEIGCDTVLKIGRILILYKES 88
>gi|357237260|ref|ZP_09124603.1| hypothetical protein STRCR_0890 [Streptococcus criceti HS-6]
gi|356885242|gb|EHI75442.1| hypothetical protein STRCR_0890 [Streptococcus criceti HS-6]
Length = 103
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH++ ++ VGK+G+ D + TS + L+A EL+K+K+ + +
Sbjct: 3 LTSKQRAFLNSQAHTMKPVVQ---VGKNGLNDQIKTSVRQALDARELIKVKLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V LEE G+ V++ G+ + +Y+ S
Sbjct: 60 HEVADILEEEIGAQSVAKTGRVLTLYKQS 88
>gi|78485155|ref|YP_391080.1| hypothetical protein Tcr_0810 [Thiomicrospira crunogena XCL-2]
gi|78363441|gb|ABB41406.1| Conserved hypothetical protein with a CRS1 / YhbY domain
[Thiomicrospira crunogena XCL-2]
Length = 101
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ + K L AH L + ++G +GVT+ ++ +TLE +ELLKIK+ +
Sbjct: 6 KLSKNQIKFLKGIAHGLNPII---IIGANGVTESLMEELEKTLEHHELLKIKMASAERSD 62
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++++ + + TG+ +V IG+TV+I+R S
Sbjct: 63 RKEIIDYILQNTGAQLVQSIGKTVVIFRQS 92
>gi|194017763|ref|ZP_03056373.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
gi|194010663|gb|EDW20235.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
Length = 96
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L + AH L + VGK GV D ++ E LE ELLK+ I + C + +V
Sbjct: 5 KQKRFLRAKAHHLSPIFQ---VGKGGVNDNMIKQISEALEVRELLKVSILQNCDEDKTEV 61
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
K L + + +V IG +++Y+ S
Sbjct: 62 AKALVKGAKAELVQTIGNVIVLYKES 87
>gi|229918237|ref|YP_002886883.1| hypothetical protein EAT1b_2518 [Exiguobacterium sp. AT1b]
gi|229469666|gb|ACQ71438.1| protein of unknown function UPF0044 [Exiguobacterium sp. AT1b]
Length = 98
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L + AH L + VGK+GV++ + + LE EL+K+++ + C
Sbjct: 2 LSGKQKRFLRAEAHHLSPIYQ---VGKNGVSEAMCKDIADALEKRELIKVQVLQNCMDTP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+DV +L E T + VV IG+ +++Y+ +
Sbjct: 59 KDVAGELAEGTQAEVVQVIGKVIVLYKEA 87
>gi|21242479|ref|NP_642061.1| hypothetical protein XAC1730 [Xanthomonas axonopodis pv. citri str.
306]
gi|21107927|gb|AAM36597.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 101
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + E LE +EL+K+K+
Sbjct: 5 LTSAQNRFLRGQAHDLKALLQT---GGKGVTPAFLAELEEVLERHELVKVKVASEDRETR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ +L E TGSA+V +IG I+YRPS
Sbjct: 62 DAMIAELVEQTGSALVQRIGHVAILYRPS 90
>gi|226224090|ref|YP_002758197.1| hypothetical protein Lm4b_01499 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|225876552|emb|CAS05261.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
Length = 96
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT +K+ L AH++ + VGK V ++ E LEA EL+KI I + C +
Sbjct: 2 LTATQKRFLRKEAHNIQPIFQ---VGKGSVLPNLIIHVKEALEARELIKISILQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
+ V +++ +G+ +V IG+T+I+Y+ S+ + ++
Sbjct: 59 QTVAEKISARSGAEIVQVIGRTIILYKTSVNKQQI 93
>gi|427820544|ref|ZP_18987607.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|410571544|emb|CCN19772.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
Length = 172
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P+ +LT +E+ +L S AH L + L+G +G+TD V+ L A+EL+K++
Sbjct: 1 MPILELTSRERSDLRSAAHPLRPVV---LIGDNGLTDAVLKEIDLALTAHELIKVRAGGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
E ++ + + A V +G+T+I++RP L
Sbjct: 58 DREAREAMLATICDTLSCAAVHHLGKTLILFRPDL 92
>gi|238755148|ref|ZP_04616494.1| Transcription elongation factor GreA [Yersinia ruckeri ATCC 29473]
gi|238706595|gb|EEP98966.1| Transcription elongation factor GreA [Yersinia ruckeri ATCC 29473]
Length = 97
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTC 84
L K+K+ L S AH L ++G +G+T+GV+ +TLE +EL+K+KI R
Sbjct: 2 NLNNKQKQHLKSLAHPLKP---VVMLGNNGLTEGVLAEIEQTLEHHELIKVKITAEERET 58
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ D + + TG+A V IG +++YRP+
Sbjct: 59 KALIADAIVR---ETGAANVQIIGNILVLYRPA 88
>gi|52081115|ref|YP_079906.1| hypothetical protein BL02080 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319644928|ref|ZP_07999161.1| hypothetical protein HMPREF1012_00194 [Bacillus sp. BT1B_CT2]
gi|404489996|ref|YP_006714102.1| RNA-binding protein YqeI [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423683092|ref|ZP_17657931.1| hypothetical protein MUY_02945 [Bacillus licheniformis WX-02]
gi|52004326|gb|AAU24268.1| hypothetical protein BL02080 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348995|gb|AAU41629.1| putative RNA-binding protein YqeI [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317392737|gb|EFV73531.1| hypothetical protein HMPREF1012_00194 [Bacillus sp. BT1B_CT2]
gi|383439866|gb|EID47641.1| hypothetical protein MUY_02945 [Bacillus licheniformis WX-02]
Length = 96
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L AH L + VGK GV + +V E LEA EL+K+ + + C
Sbjct: 2 LTGKQKRYLRREAHHLSPIFQ---VGKGGVNENMVKQISEALEARELIKVSVLQNCEQPK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
E+V + L + +V IG +++Y+ S K+E
Sbjct: 59 EEVAEALAGGARAELVQTIGNIIVLYKESKENKKIE 94
>gi|89895908|ref|YP_519395.1| hypothetical protein DSY3162 [Desulfitobacterium hafniense Y51]
gi|89335356|dbj|BAE84951.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 97
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K L S + + L+ +GK GVT+ V+ ETLEA EL+K R P +
Sbjct: 2 LTGKQKGFLRSMGNEMDPILQ---IGKGGVTEAVIAQTDETLEARELIK---GRVLPNSM 55
Query: 89 EDV---VKQLEEATGSAVVSQIGQTVIIYRPS 117
EDV +L E T + +V IG+ ++YR S
Sbjct: 56 EDVQRAAAELAERTSAELVQVIGRNFLLYRES 87
>gi|315634154|ref|ZP_07889443.1| RNA-binding protein YhbY [Aggregatibacter segnis ATCC 33393]
gi|315477404|gb|EFU68147.1| RNA-binding protein YhbY [Aggregatibacter segnis ATCC 33393]
Length = 100
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L S AH L ++G +G+T+GV+ +L +EL+K+KI+ +
Sbjct: 5 LSTKQKQYLKSLAHHLSP---VVMLGGNGLTEGVLAEIDLSLNHHELIKVKINGSDRETK 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
+ ++ + TG+A V IG +++YRPS EE K Q R
Sbjct: 62 QLIIDAIVRETGAAEVQTIGHVLVLYRPS------EENKIQLPR 99
>gi|450089115|ref|ZP_21855044.1| RNA-binding protein [Streptococcus mutans NV1996]
gi|450107702|ref|ZP_21861139.1| RNA-binding protein [Streptococcus mutans SF14]
gi|449215967|gb|EMC16129.1| RNA-binding protein [Streptococcus mutans NV1996]
gi|449221544|gb|EMC21313.1| RNA-binding protein [Streptococcus mutans SF14]
Length = 102
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHSLKPIVQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HEVAQILEDEIGLETVLKIGRILILYKES 87
>gi|55821596|ref|YP_140038.1| hypothetical protein stu1620 [Streptococcus thermophilus LMG 18311]
gi|55823524|ref|YP_141965.1| hypothetical protein str1620 [Streptococcus thermophilus CNRZ1066]
gi|116628311|ref|YP_820930.1| RNA-binding protein [Streptococcus thermophilus LMD-9]
gi|386087222|ref|YP_006003096.1| 50S ribosomal protein L11 methyltransferase [Streptococcus
thermophilus ND03]
gi|386345318|ref|YP_006041482.1| hypothetical protein STH8232_1865 [Streptococcus thermophilus JIM
8232]
gi|387910324|ref|YP_006340630.1| hypothetical protein Y1U_C1516 [Streptococcus thermophilus
MN-ZLW-002]
gi|445382104|ref|ZP_21427171.1| hypothetical protein IQ5_07511 [Streptococcus thermophilus MTCC
5460]
gi|445394857|ref|ZP_21428905.1| hypothetical protein IQ7_07589 [Streptococcus thermophilus MTCC
5461]
gi|55737581|gb|AAV61223.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|55739509|gb|AAV63150.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
gi|116101588|gb|ABJ66734.1| Predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Streptococcus thermophilus LMD-9]
gi|312278935|gb|ADQ63592.1| Ribosomal protein L11 methyltransferase [Streptococcus thermophilus
ND03]
gi|339278779|emb|CCC20527.1| hypothetical protein STH8232_1865 [Streptococcus thermophilus JIM
8232]
gi|387575259|gb|AFJ83965.1| hypothetical protein Y1U_C1516 [Streptococcus thermophilus
MN-ZLW-002]
gi|444748730|gb|ELW73684.1| hypothetical protein IQ7_07589 [Streptococcus thermophilus MTCC
5461]
gi|444748808|gb|ELW73758.1| hypothetical protein IQ5_07511 [Streptococcus thermophilus MTCC
5460]
Length = 105
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 3 LTSKQRAFLKSEAHTLKPIVQ---IGKNGLNDHIKTSVRNALDARELIKVTLLQNTMEDI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 HEVAEILEEEIGCDTVLKIGRILILYKES 88
>gi|393759701|ref|ZP_10348513.1| hypothetical protein QWA_11282 [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393161513|gb|EJC61575.1| hypothetical protein QWA_11282 [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 198
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P LT E+ +L + AH+L + L+G +G+TD V+ L+A++L+KI++
Sbjct: 1 MPKLNLTPHERSDLRAAAHALRPVV---LIGDNGLTDAVLKEITVHLQAHQLIKIRVAGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
+++Q+ +A +A + +G+ + IYRP++ R
Sbjct: 58 DRQARLTMLEQICDALDAAPIHHLGKILTIYRPNIER 94
>gi|325290562|ref|YP_004266743.1| RNA-binding, CRM domain-containing protein [Syntrophobotulus
glycolicus DSM 8271]
gi|324965963|gb|ADY56742.1| RNA-binding, CRM domain protein [Syntrophobotulus glycolicus DSM
8271]
Length = 96
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S + + L LVGK +TD + + LEA EL+K ++ + C
Sbjct: 2 LTGKQKRHLRSLGNQITPIL---LVGKEEITDNLRRQVTDALEARELIKGRVLQNCAQIP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
E++ QL E G+ +V IG+ ++Y+ S + K+E
Sbjct: 59 ENIAGQLAEDAGAELVQVIGRNFLLYKRSKDKPKIE 94
>gi|33592219|ref|NP_879863.1| hypothetical protein BP1079 [Bordetella pertussis Tohama I]
gi|33600443|ref|NP_888003.1| hypothetical protein BB1458 [Bordetella bronchiseptica RB50]
gi|384203522|ref|YP_005589261.1| hypothetical protein BPTD_1072 [Bordetella pertussis CS]
gi|408415414|ref|YP_006626121.1| hypothetical protein BN118_1483 [Bordetella pertussis 18323]
gi|410419208|ref|YP_006899657.1| hypothetical protein BN115_1416 [Bordetella bronchiseptica MO149]
gi|410471932|ref|YP_006895213.1| hypothetical protein BN117_1218 [Bordetella parapertussis Bpp5]
gi|427813677|ref|ZP_18980741.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|427824482|ref|ZP_18991544.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|33568042|emb|CAE31955.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
gi|33571864|emb|CAE41378.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332381636|gb|AEE66483.1| hypothetical protein BPTD_1072 [Bordetella pertussis CS]
gi|401777584|emb|CCJ62908.1| conserved hypothetical protein [Bordetella pertussis 18323]
gi|408442042|emb|CCJ48551.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
gi|408446503|emb|CCJ58172.1| conserved hypothetical protein [Bordetella bronchiseptica MO149]
gi|410564677|emb|CCN22224.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|410589747|emb|CCN04820.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 200
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P+ +LT +E+ +L S AH L + L+G +G+TD V+ L A+EL+K++
Sbjct: 1 MPILELTSRERSDLRSAAHPLRPVV---LIGDNGLTDAVLKEIDLALTAHELIKVRAGGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
E ++ + + A V +G+T+I++RP L
Sbjct: 58 DREAREAMLATICDTLSCAAVHHLGKTLILFRPDL 92
>gi|294665641|ref|ZP_06730918.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292604587|gb|EFF47961.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 101
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + E LE +EL+K+K+
Sbjct: 5 LTSAQNRFLRGQAHDLKALLQT---GGKGVTPAFLAELEEVLERHELVKVKVASEDRETR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ +L E TGSA+V +IG I+YRPS
Sbjct: 62 DALIAELIEQTGSALVQRIGHVAILYRPS 90
>gi|78047319|ref|YP_363494.1| hypothetical protein XCV1763 [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|294626638|ref|ZP_06705235.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|325928790|ref|ZP_08189959.1| hypothetical protein TIGR00253 [Xanthomonas perforans 91-118]
gi|346724660|ref|YP_004851329.1| RNA-binding protein containing KH domain [Xanthomonas axonopodis
pv. citrumelo F1]
gi|418517985|ref|ZP_13084140.1| RNA-binding protein containing KH domain [Xanthomonas axonopodis
pv. malvacearum str. GSPB1386]
gi|418519798|ref|ZP_13085849.1| RNA-binding protein containing KH domain [Xanthomonas axonopodis
pv. malvacearum str. GSPB2388]
gi|78035749|emb|CAJ23440.1| conserved hypothetical protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|292599058|gb|EFF43198.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|325540871|gb|EGD12444.1| hypothetical protein TIGR00253 [Xanthomonas perforans 91-118]
gi|346649407|gb|AEO42031.1| RNA-binding protein containing KH domain [Xanthomonas axonopodis
pv. citrumelo F1]
gi|410704458|gb|EKQ62940.1| RNA-binding protein containing KH domain [Xanthomonas axonopodis
pv. malvacearum str. GSPB2388]
gi|410705346|gb|EKQ63821.1| RNA-binding protein containing KH domain [Xanthomonas axonopodis
pv. malvacearum str. GSPB1386]
Length = 101
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + E LE +EL+K+K+
Sbjct: 5 LTSAQNRFLRGQAHDLKALLQT---GGKGVTPAFLAELEEVLERHELVKVKVASEDRETR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ +L E TGSA+V +IG I+YRPS
Sbjct: 62 DALIAELIEQTGSALVQRIGHVAILYRPS 90
>gi|390989112|ref|ZP_10259412.1| RNA-binding protein YhbY [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|372556146|emb|CCF66387.1| RNA-binding protein YhbY [Xanthomonas axonopodis pv. punicae str.
LMG 859]
Length = 101
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + E LE +EL+K+K+
Sbjct: 5 LTSAQNRFLRGQAHDLKALLQT---GGKGVTPAFLAELEEVLERHELVKVKVASEDRETR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ +L E TGSA+V +IG I+YRPS
Sbjct: 62 DAMIAELIEQTGSALVQRIGHVAILYRPS 90
>gi|242242873|ref|ZP_04797318.1| RNA binding protein [Staphylococcus epidermidis W23144]
gi|242233648|gb|EES35960.1| RNA binding protein [Staphylococcus epidermidis W23144]
Length = 97
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ ETLE EL+KI I + +
Sbjct: 3 LTGKQKRYLRSLAHNIDPTFQ---IGKGGINENMIQQISETLEKRELIKIHILQNNFDDK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+D+ + E T S +V IG +++Y+ S
Sbjct: 60 KDLAALVAEQTQSELVQIIGSMIVLYKES 88
>gi|126653884|ref|ZP_01725731.1| hypothetical protein BB14905_09430 [Bacillus sp. B14905]
gi|169829300|ref|YP_001699458.1| hypothetical protein Bsph_3850 [Lysinibacillus sphaericus C3-41]
gi|126589609|gb|EAZ83748.1| hypothetical protein BB14905_09430 [Bacillus sp. B14905]
gi|168993788|gb|ACA41328.1| UPF0044 protein [Lysinibacillus sphaericus C3-41]
Length = 100
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV D + E LE EL+K++I C +
Sbjct: 2 LTGKQKRFLRAEAHHLSPIFQ---VGKGGVNDEMTKQIREALEVRELIKVRILDNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
+V + L + + +V IG TV++Y+ S + K+
Sbjct: 59 HEVAEALAKGAHAELVQLIGLTVVLYKESRNQKKI 93
>gi|336435003|ref|ZP_08614721.1| hypothetical protein HMPREF0988_00306 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336001896|gb|EGN32023.1| hypothetical protein HMPREF0988_00306 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 97
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A ++ + +GKS +T G+ + E LEA EL+KI + + C +
Sbjct: 1 MTTKQRAYLKSLAMTMDPIFQ---IGKSSMTPGLTQAIAEALEARELIKISVLKNCADDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ + + E T S VV IG+ +++Y+
Sbjct: 58 SELAQLVAERTRSQVVQVIGKKIVLYK 84
>gi|82751197|ref|YP_416938.1| hypothetical protein SAB1467c [Staphylococcus aureus RF122]
gi|82656728|emb|CAI81156.1| conserved hypothetical protein [Staphylococcus aureus RF122]
Length = 96
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ +TLE EL+K+ + + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQ---IGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + L +AT S +V IG ++IYR S
Sbjct: 59 KELAETLSKATRSELVQVIGSMIVIYRES 87
>gi|392980860|ref|YP_006479448.1| RNA-binding protein YhbY [Enterobacter cloacae subsp. dissolvens
SDM]
gi|392326793|gb|AFM61746.1| RNA-binding protein YhbY [Enterobacter cloacae subsp. dissolvens
SDM]
Length = 97
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRDT 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 59 KNLIVEAIVRETGACNVQVIGKTLVLYRPT 88
>gi|339010604|ref|ZP_08643174.1| putative RNA-binding protein YqeI [Brevibacillus laterosporus LMG
15441]
gi|421873987|ref|ZP_16305596.1| putative uncharacterized protein [Brevibacillus laterosporus GI-9]
gi|338772759|gb|EGP32292.1| putative RNA-binding protein YqeI [Brevibacillus laterosporus LMG
15441]
gi|372457098|emb|CCF15145.1| putative uncharacterized protein [Brevibacillus laterosporus GI-9]
Length = 96
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV + +V E LE EL+K+ I + +
Sbjct: 2 LTGKQKRYLRSMAHHLTPIFQ---VGKGGVNENMVKQIQEALEVRELIKVSILQNNMDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V + L G+ +V IG TV++Y+ S
Sbjct: 59 HAVAEDLATGAGAEMVQLIGHTVVLYKES 87
>gi|418328767|ref|ZP_12939866.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
14.1.R1.SE]
gi|418615705|ref|ZP_13178644.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU118]
gi|418631433|ref|ZP_13193896.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU128]
gi|418633502|ref|ZP_13195915.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU129]
gi|420174639|ref|ZP_14681088.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM061]
gi|420190209|ref|ZP_14696153.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM037]
gi|420192346|ref|ZP_14698206.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM023]
gi|420204513|ref|ZP_14710071.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM015]
gi|365231613|gb|EHM72646.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
14.1.R1.SE]
gi|374816755|gb|EHR80954.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU118]
gi|374835324|gb|EHR98940.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU128]
gi|374839255|gb|EHS02773.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU129]
gi|394244870|gb|EJD90202.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM061]
gi|394259100|gb|EJE03970.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM037]
gi|394261557|gb|EJE06354.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM023]
gi|394273523|gb|EJE17954.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM015]
Length = 96
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ ETLE EL+KI I + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPTFQ---IGKGGINENMIQQISETLEKRELIKIHILQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+D+ + E T S +V IG +++Y+ S
Sbjct: 59 KDLAALVAEQTQSELVQIIGSMIVLYKES 87
>gi|387785526|ref|YP_006250622.1| hypothetical protein SMULJ23_0345 [Streptococcus mutans LJ23]
gi|450169920|ref|ZP_21883267.1| RNA-binding protein [Streptococcus mutans SM4]
gi|379131927|dbj|BAL68679.1| hypothetical protein SMULJ23_0345 [Streptococcus mutans LJ23]
gi|449246501|gb|EMC44804.1| RNA-binding protein [Streptococcus mutans SM4]
Length = 102
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHSLKPVVQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HEVAEILEDEIGLETVLKIGRILILYKES 87
>gi|237730100|ref|ZP_04560581.1| RNA-binding protein YhbY [Citrobacter sp. 30_2]
gi|365103247|ref|ZP_09333279.1| RNA-binding protein YhbY [Citrobacter freundii 4_7_47CFAA]
gi|395227974|ref|ZP_10406299.1| RNA-binding protein YhbY [Citrobacter sp. A1]
gi|424732913|ref|ZP_18161485.1| rna-binding protein [Citrobacter sp. L17]
gi|226908706|gb|EEH94624.1| RNA-binding protein YhbY [Citrobacter sp. 30_2]
gi|363645586|gb|EHL84849.1| RNA-binding protein YhbY [Citrobacter freundii 4_7_47CFAA]
gi|394718470|gb|EJF24100.1| RNA-binding protein YhbY [Citrobacter sp. A1]
gi|422892729|gb|EKU32582.1| rna-binding protein [Citrobacter sp. L17]
Length = 110
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 15 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRDT 71
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 72 KTLIVEAIVRETGACNVQVIGKTLVLYRPT 101
>gi|417908018|ref|ZP_12551785.1| RNA-binding protein, YhbY family [Staphylococcus capitis VCU116]
gi|341595105|gb|EGS37783.1| RNA-binding protein, YhbY family [Staphylococcus capitis VCU116]
Length = 96
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH+ + +GK G+ + +++ ETLE EL+KI + + +
Sbjct: 2 LTGKQKRYLRSLAHNTDPTFQ---IGKGGINENMISQIDETLEKRELIKIHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ +L +AT S +V IG +++Y+
Sbjct: 59 NELANELSQATKSELVQVIGSMIVLYK 85
>gi|345860553|ref|ZP_08812864.1| hypothetical protein DOT_4282 [Desulfosporosinus sp. OT]
gi|344326407|gb|EGW37874.1| hypothetical protein DOT_4282 [Desulfosporosinus sp. OT]
Length = 97
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + + + L+ VGK G+ + VVT E +EA EL+K ++ + C E
Sbjct: 2 LTGKQKRFLRAMGNEMVPILQ---VGKGGIVETVVTQADEAIEARELIKGRVLQNCLEEP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ V +L E TG+ +V IG+ +++R S
Sbjct: 59 KTVAAELAEQTGAELVQVIGRNFLLFRQS 87
>gi|291086512|ref|ZP_06356015.2| RNA-binding protein YhbY [Citrobacter youngae ATCC 29220]
gi|291067637|gb|EFE05746.1| RNA-binding protein YhbY [Citrobacter youngae ATCC 29220]
Length = 116
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 21 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRDT 77
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 78 KTLIVEAIVRETGACNVQVIGKTLVLYRPT 107
>gi|253574705|ref|ZP_04852045.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845751|gb|EES73759.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 96
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK G + ++ E LE EL+KI + +
Sbjct: 2 LTGKQKRYLRSLAHGLQPIFQ---VGKGGTNEHMIKQISEALERRELIKISVLNNNLDDP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ ++L + G+ +V IG+T+I+Y+ S
Sbjct: 59 QEIAEELAQGAGAELVQLIGRTIILYKES 87
>gi|237748684|ref|ZP_04579164.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229380046|gb|EEO30137.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 157
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL +++ +L S AHSL + ++G +G+TD V+ +L A+EL+KI++
Sbjct: 3 KLNSEQRSQLRSLAHSLDPVV---MIGDAGLTDAVLKEIDVSLNAHELIKIRVFGDDRQA 59
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
D+++ + E +A + IG+ ++IYRP
Sbjct: 60 RLDMLESICEQMEAAPIQHIGKLLVIYRP 88
>gi|24380164|ref|NP_722119.1| hypothetical protein SMU_1800c [Streptococcus mutans UA159]
gi|290579864|ref|YP_003484256.1| hypothetical protein SmuNN2025_0338 [Streptococcus mutans NN2025]
gi|397650375|ref|YP_006490902.1| hypothetical protein SMUGS5_08135 [Streptococcus mutans GS-5]
gi|449866836|ref|ZP_21779650.1| RNA-binding protein [Streptococcus mutans U2B]
gi|449869936|ref|ZP_21780375.1| RNA-binding protein [Streptococcus mutans 8ID3]
gi|449876632|ref|ZP_21782889.1| RNA-binding protein [Streptococcus mutans S1B]
gi|449887305|ref|ZP_21786720.1| RNA-binding protein [Streptococcus mutans SA41]
gi|449893714|ref|ZP_21788891.1| RNA-binding protein [Streptococcus mutans SF12]
gi|449897617|ref|ZP_21790108.1| RNA-binding protein [Streptococcus mutans R221]
gi|449904710|ref|ZP_21792810.1| RNA-binding protein [Streptococcus mutans M230]
gi|449908950|ref|ZP_21794063.1| RNA-binding protein [Streptococcus mutans OMZ175]
gi|449915663|ref|ZP_21796410.1| RNA-binding protein [Streptococcus mutans 15JP3]
gi|449919674|ref|ZP_21798073.1| RNA-binding protein [Streptococcus mutans 1SM1]
gi|449926276|ref|ZP_21800674.1| RNA-binding protein [Streptococcus mutans 4SM1]
gi|449932298|ref|ZP_21802789.1| RNA-binding protein [Streptococcus mutans 3SN1]
gi|449938689|ref|ZP_21805015.1| RNA-binding protein [Streptococcus mutans 2ST1]
gi|449942607|ref|ZP_21806102.1| RNA-binding protein [Streptococcus mutans 11A1]
gi|449947224|ref|ZP_21807267.1| RNA-binding protein [Streptococcus mutans 11SSST2]
gi|449963593|ref|ZP_21810887.1| RNA-binding protein [Streptococcus mutans 15VF2]
gi|449971651|ref|ZP_21814482.1| RNA-binding protein [Streptococcus mutans 2VS1]
gi|449976729|ref|ZP_21816342.1| RNA-binding protein [Streptococcus mutans 11VS1]
gi|449982205|ref|ZP_21818185.1| RNA-binding protein [Streptococcus mutans 5SM3]
gi|449987023|ref|ZP_21820327.1| RNA-binding protein [Streptococcus mutans NFSM2]
gi|449988610|ref|ZP_21820628.1| RNA-binding protein [Streptococcus mutans NVAB]
gi|449997467|ref|ZP_21824019.1| RNA-binding protein [Streptococcus mutans A9]
gi|450000105|ref|ZP_21824924.1| RNA-binding protein [Streptococcus mutans N29]
gi|450006351|ref|ZP_21827180.1| RNA-binding protein [Streptococcus mutans NMT4863]
gi|450010363|ref|ZP_21828632.1| RNA-binding protein [Streptococcus mutans A19]
gi|450023322|ref|ZP_21830535.1| RNA-binding protein [Streptococcus mutans U138]
gi|450029762|ref|ZP_21832864.1| RNA-binding protein [Streptococcus mutans G123]
gi|450036900|ref|ZP_21835668.1| RNA-binding protein [Streptococcus mutans M21]
gi|450039515|ref|ZP_21836226.1| RNA-binding protein [Streptococcus mutans T4]
gi|450044470|ref|ZP_21837870.1| RNA-binding protein [Streptococcus mutans N34]
gi|450052100|ref|ZP_21841148.1| RNA-binding protein [Streptococcus mutans NFSM1]
gi|450057388|ref|ZP_21842555.1| RNA-binding protein [Streptococcus mutans NLML4]
gi|450061596|ref|ZP_21843907.1| RNA-binding protein [Streptococcus mutans NLML5]
gi|450072629|ref|ZP_21848693.1| RNA-binding protein [Streptococcus mutans M2A]
gi|450078569|ref|ZP_21851059.1| RNA-binding protein [Streptococcus mutans N3209]
gi|450081503|ref|ZP_21851768.1| RNA-binding protein [Streptococcus mutans N66]
gi|450092067|ref|ZP_21855760.1| RNA-binding protein [Streptococcus mutans W6]
gi|450098941|ref|ZP_21858242.1| RNA-binding protein [Streptococcus mutans SF1]
gi|450110539|ref|ZP_21862153.1| RNA-binding protein [Streptococcus mutans SM6]
gi|450116250|ref|ZP_21864386.1| RNA-binding protein [Streptococcus mutans ST1]
gi|450121838|ref|ZP_21866477.1| RNA-binding protein [Streptococcus mutans ST6]
gi|450145065|ref|ZP_21874390.1| RNA-binding protein [Streptococcus mutans 1ID3]
gi|450150198|ref|ZP_21876492.1| RNA-binding protein [Streptococcus mutans 14D]
gi|450154622|ref|ZP_21877858.1| RNA-binding protein [Streptococcus mutans 21]
gi|450160190|ref|ZP_21879860.1| RNA-binding protein [Streptococcus mutans 66-2A]
gi|450163519|ref|ZP_21880831.1| RNA-binding protein [Streptococcus mutans B]
gi|450175543|ref|ZP_21885247.1| RNA-binding protein [Streptococcus mutans SM1]
gi|450181256|ref|ZP_21887718.1| RNA-binding protein [Streptococcus mutans 24]
gi|24378166|gb|AAN59425.1|AE015007_12 conserved hypothetical protein [Streptococcus mutans UA159]
gi|254996763|dbj|BAH87364.1| hypothetical protein [Streptococcus mutans NN2025]
gi|392603944|gb|AFM82108.1| hypothetical protein SMUGS5_08135 [Streptococcus mutans GS-5]
gi|449149786|gb|EMB53573.1| RNA-binding protein [Streptococcus mutans 1ID3]
gi|449150346|gb|EMB54114.1| RNA-binding protein [Streptococcus mutans 11A1]
gi|449156141|gb|EMB59621.1| RNA-binding protein [Streptococcus mutans 15JP3]
gi|449157406|gb|EMB60848.1| RNA-binding protein [Streptococcus mutans 8ID3]
gi|449159246|gb|EMB62606.1| RNA-binding protein [Streptococcus mutans 1SM1]
gi|449160748|gb|EMB63990.1| RNA-binding protein [Streptococcus mutans 4SM1]
gi|449161477|gb|EMB64663.1| RNA-binding protein [Streptococcus mutans 3SN1]
gi|449162532|gb|EMB65663.1| RNA-binding protein [Streptococcus mutans 2ST1]
gi|449168887|gb|EMB71685.1| RNA-binding protein [Streptococcus mutans 11SSST2]
gi|449171757|gb|EMB74405.1| RNA-binding protein [Streptococcus mutans 2VS1]
gi|449173368|gb|EMB75945.1| RNA-binding protein [Streptococcus mutans 15VF2]
gi|449175080|gb|EMB77525.1| RNA-binding protein [Streptococcus mutans 5SM3]
gi|449175268|gb|EMB77695.1| RNA-binding protein [Streptococcus mutans 11VS1]
gi|449176867|gb|EMB79193.1| RNA-binding protein [Streptococcus mutans NFSM2]
gi|449181815|gb|EMB83876.1| RNA-binding protein [Streptococcus mutans A9]
gi|449183788|gb|EMB85762.1| RNA-binding protein [Streptococcus mutans NVAB]
gi|449186161|gb|EMB88004.1| RNA-binding protein [Streptococcus mutans N29]
gi|449187646|gb|EMB89414.1| RNA-binding protein [Streptococcus mutans NMT4863]
gi|449190217|gb|EMB91806.1| RNA-binding protein [Streptococcus mutans A19]
gi|449193096|gb|EMB94491.1| RNA-binding protein [Streptococcus mutans M21]
gi|449193635|gb|EMB95014.1| RNA-binding protein [Streptococcus mutans U138]
gi|449193954|gb|EMB95323.1| RNA-binding protein [Streptococcus mutans G123]
gi|449200329|gb|EMC01362.1| RNA-binding protein [Streptococcus mutans T4]
gi|449201223|gb|EMC02229.1| RNA-binding protein [Streptococcus mutans NFSM1]
gi|449201639|gb|EMC02625.1| RNA-binding protein [Streptococcus mutans N34]
gi|449205316|gb|EMC06068.1| RNA-binding protein [Streptococcus mutans NLML4]
gi|449207027|gb|EMC07710.1| RNA-binding protein [Streptococcus mutans NLML5]
gi|449209879|gb|EMC10375.1| RNA-binding protein [Streptococcus mutans N3209]
gi|449210943|gb|EMC11368.1| RNA-binding protein [Streptococcus mutans M2A]
gi|449215207|gb|EMC15418.1| RNA-binding protein [Streptococcus mutans N66]
gi|449218760|gb|EMC18759.1| RNA-binding protein [Streptococcus mutans W6]
gi|449221127|gb|EMC20929.1| RNA-binding protein [Streptococcus mutans SF1]
gi|449225020|gb|EMC24639.1| RNA-binding protein [Streptococcus mutans SM6]
gi|449227140|gb|EMC26584.1| RNA-binding protein [Streptococcus mutans ST1]
gi|449228724|gb|EMC28078.1| RNA-binding protein [Streptococcus mutans ST6]
gi|449233833|gb|EMC32880.1| RNA-binding protein [Streptococcus mutans 14D]
gi|449237724|gb|EMC36539.1| RNA-binding protein [Streptococcus mutans 21]
gi|449240380|gb|EMC39059.1| RNA-binding protein [Streptococcus mutans 66-2A]
gi|449242683|gb|EMC41243.1| RNA-binding protein [Streptococcus mutans B]
gi|449246629|gb|EMC44928.1| RNA-binding protein [Streptococcus mutans SM1]
gi|449246926|gb|EMC45220.1| RNA-binding protein [Streptococcus mutans 24]
gi|449252025|gb|EMC50017.1| RNA-binding protein [Streptococcus mutans S1B]
gi|449253034|gb|EMC50999.1| RNA-binding protein [Streptococcus mutans SA41]
gi|449255713|gb|EMC53557.1| RNA-binding protein [Streptococcus mutans SF12]
gi|449259061|gb|EMC56609.1| RNA-binding protein [Streptococcus mutans M230]
gi|449261151|gb|EMC58635.1| RNA-binding protein [Streptococcus mutans R221]
gi|449262014|gb|EMC59472.1| RNA-binding protein [Streptococcus mutans OMZ175]
gi|449263591|gb|EMC60961.1| RNA-binding protein [Streptococcus mutans U2B]
Length = 102
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHSLKPIVQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HEVAEILEDEIGLETVLKIGRILILYKES 87
>gi|418019790|ref|ZP_12659209.1| putative RNA-binding protein, YhbY family [Candidatus Regiella
insecticola R5.15]
gi|347604858|gb|EGY29405.1| putative RNA-binding protein, YhbY family [Candidatus Regiella
insecticola R5.15]
Length = 97
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L K+K+ L S AHSL ++G +G+T V+ +TLE +E++KIKI
Sbjct: 2 NLNNKQKQHLKSLAHSLKP---VVMIGNNGLTKAVLAEIEQTLEHHEIIKIKITTEKRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
++ + + T + VV IG +++YRP+ R
Sbjct: 59 KSNIADTIVDKTNATVVQIIGNILVLYRPAKDR 91
>gi|168334004|ref|ZP_02692228.1| hypothetical protein Epulo_03712 [Epulopiscium sp. 'N.t. morphotype
B']
Length = 97
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A ++ + VGK+ VT +V E L A EL+KI + C ++
Sbjct: 1 MTSKQRAHLRSLAQNINSTFQ---VGKNSVTPELVIGISEALAARELIKITVLNNCDEDI 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
D+ + L E + S ++ IG+ +I+Y+
Sbjct: 58 TDIAQMLAERSKSQLIQIIGKKIILYK 84
>gi|311277846|ref|YP_003940077.1| hypothetical protein Entcl_0516 [Enterobacter cloacae SCF1]
gi|308747041|gb|ADO46793.1| protein of unknown function UPF0044 [Enterobacter cloacae SCF1]
Length = 110
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 15 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRET 71
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
+V+ + TG+ V IG+T+++YRP+ R
Sbjct: 72 KTLIVEAIVRETGACNVQVIGKTLVLYRPTAER 104
>gi|332522909|ref|ZP_08399161.1| RNA-binding protein, YhbY family [Streptococcus porcinus str.
Jelinkova 176]
gi|332314173|gb|EGJ27158.1| RNA-binding protein, YhbY family [Streptococcus porcinus str.
Jelinkova 176]
Length = 102
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L + AHSL ++ +GK+G+ + V TS L+A EL+K+ + + +
Sbjct: 2 LTSKQRAFLKAEAHSLKPIVQ---IGKNGLNNQVKTSVRHALDARELIKVTLLQNTDENI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HDVAETLEDEIGCETVLKIGRILILYKVS 87
>gi|450125813|ref|ZP_21867842.1| RNA-binding protein [Streptococcus mutans U2A]
gi|449232057|gb|EMC31196.1| RNA-binding protein [Streptococcus mutans U2A]
Length = 105
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHSLKPIVQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HEVAEILEDEIGLETVLKIGRILILYKGS 87
>gi|403384195|ref|ZP_10926252.1| hypothetical protein KJC30_05814 [Kurthia sp. JC30]
Length = 100
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + + L A ELLK++I C +
Sbjct: 2 LTGKQKRFLRAEAHHLNPIFQ---VGKEGVGEAQCEQIRQALAARELLKVRILDNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
+ V +QL E T + +V IG TV++Y+ + R
Sbjct: 59 KVVAQQLVEGTDAELVQLIGLTVVLYKQASKR 90
>gi|399155147|ref|ZP_10755214.1| hypothetical protein gproSAA_04941 [gamma proteobacterium SCGC
AAA007-O20]
Length = 100
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KLT +KK L + AH L +VG+ G+++ V+ T+ +ELLKIK+ E
Sbjct: 3 KLTNNQKKHLRTLAHDLRP---IVMVGQQGLSEAVLAELESTMTKHELLKIKVRANDREE 59
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+ +V ++ + +A+V IG ++IYRP
Sbjct: 60 KQQIVDKILNFSKAALVQVIGGVLVIYRP 88
>gi|299535725|ref|ZP_07049046.1| hypothetical protein BFZC1_06868 [Lysinibacillus fusiformis ZC1]
gi|424739108|ref|ZP_18167530.1| hypothetical protein C518_3645 [Lysinibacillus fusiformis ZB2]
gi|298728925|gb|EFI69479.1| hypothetical protein BFZC1_06868 [Lysinibacillus fusiformis ZC1]
gi|422946973|gb|EKU41375.1| hypothetical protein C518_3645 [Lysinibacillus fusiformis ZB2]
Length = 100
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV D + E LE EL+K++I C +
Sbjct: 2 LTGKQKRFLRAEAHHLTPIFQ---VGKGGVNDEMTKQIREALEVRELIKVRILDNCEDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
+V + L + + +V IG TV++Y+ S K+
Sbjct: 59 HEVAEALAKGAHAELVQLIGLTVVLYKESRNHKKI 93
>gi|425737430|ref|ZP_18855703.1| hypothetical protein C273_03530 [Staphylococcus massiliensis S46]
gi|425482778|gb|EKU49934.1| hypothetical protein C273_03530 [Staphylococcus massiliensis S46]
Length = 96
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+++ L S AH L + +GKSG+ + +V + LE EL+KI + + +
Sbjct: 2 LSGKQRRFLRSKAHHLDPIFQ---IGKSGINENMVDQINDVLEKRELIKIHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
D+ + L E T S VV IG +++Y+ S ++E
Sbjct: 59 SDLAESLSEHTQSEVVQVIGSMIVLYKESSDNKQIE 94
>gi|260596193|ref|YP_003208764.1| RNA-binding protein YhbY [Cronobacter turicensis z3032]
gi|429089294|ref|ZP_19152026.1| FIG004454: RNA binding protein [Cronobacter universalis NCTC 9529]
gi|429102970|ref|ZP_19164944.1| FIG004454: RNA binding protein [Cronobacter turicensis 564]
gi|260215370|emb|CBA27385.1| RNA-binding protein yhbY [Cronobacter turicensis z3032]
gi|426289619|emb|CCJ91057.1| FIG004454: RNA binding protein [Cronobacter turicensis 564]
gi|426509097|emb|CCK17138.1| FIG004454: RNA binding protein [Cronobacter universalis NCTC 9529]
Length = 97
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKI------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED VV + TG+ V IG+T+++YRPS
Sbjct: 53 TEDRETKTLVVDAIVRETGACNVQVIGKTLVLYRPS 88
>gi|344344409|ref|ZP_08775272.1| RNA-binding, CRM domain protein [Marichromatium purpuratum 984]
gi|343804079|gb|EGV21982.1| RNA-binding, CRM domain protein [Marichromatium purpuratum 984]
Length = 100
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K+K+ L AH L +VG+ G+TD V+ L+ +ELLK KI EL
Sbjct: 3 ITEKQKRWLKQQAHHLKP---VVIVGQHGITDAVIAELEIALDHHELLKTKI-SAGDREL 58
Query: 89 ED-VVKQLEEATGSAVVSQIGQTVIIYRPS 117
D + +L E TG+ +V++IG I+YR +
Sbjct: 59 RDAAIAELIERTGAMLVNRIGNIAILYRAN 88
>gi|449883957|ref|ZP_21785427.1| RNA-binding protein [Streptococcus mutans SA38]
gi|449249417|gb|EMC47547.1| RNA-binding protein [Streptococcus mutans SA38]
Length = 102
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHSLKPIVQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HEVAEILEDEFGLETVLKIGRILILYKES 87
>gi|315645930|ref|ZP_07899051.1| hypothetical protein PVOR_10729 [Paenibacillus vortex V453]
gi|315278691|gb|EFU42005.1| hypothetical protein PVOR_10729 [Paenibacillus vortex V453]
Length = 96
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK G + ++ E +E ELLK+ + C +
Sbjct: 2 LTGKQKRHLRSLAHHLDPLFQ---VGKGGSNEHLIRHISEAIEKRELLKVSVLNNCLEDP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ ++L E + +V IG+T+++Y+ S
Sbjct: 59 REIAQELAEGAKAELVQVIGKTIVLYKES 87
>gi|312863927|ref|ZP_07724165.1| RNA-binding protein, YhbY family [Streptococcus vestibularis F0396]
gi|311101463|gb|EFQ59668.1| RNA-binding protein, YhbY family [Streptococcus vestibularis F0396]
Length = 105
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 3 LTSKQRAFLKSEAHTLKPIVQ---IGKNGLNDHIKTSVRNALDARELIKVTLLQNTMEDI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 YEVAEILEEEIGCDTVLKIGRILILYKES 88
>gi|291519389|emb|CBK74610.1| Predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Butyrivibrio fibrisolvens 16/4]
Length = 95
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L+S A + L+ +GK+ +T + E LEA EL+KI + + C +
Sbjct: 1 MTNKQRAYLSSLAADMSPILQ---IGKASLTPEYTNAVDEALEARELIKINVLKNCFDDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++ + L E T S VV IG+ +I+YR
Sbjct: 58 KEIAQVLSERTHSEVVRVIGRKIILYR 84
>gi|374338655|ref|YP_005095372.1| RNA binding protein [Streptococcus macedonicus ACA-DC 198]
gi|372284772|emb|CCF03065.1| RNA binding protein [Streptococcus macedonicus ACA-DC 198]
Length = 110
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 23 PLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHR 82
P + LT K++ L S AHS+ ++ +GK+G+ D + TS L+A EL+K+ + +
Sbjct: 2 PDMIIMLTSKQRAFLKSQAHSMKPIVQ---IGKNGLNDQIKTSVRIALDARELIKVTLLQ 58
Query: 83 TCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ +V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 NTDEDIHEVAEILEDQIGCDTVLKIGRILILYKES 93
>gi|420177911|ref|ZP_14684245.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM057]
gi|420181400|ref|ZP_14687601.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM053]
gi|420199836|ref|ZP_14705506.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM031]
gi|394246316|gb|EJD91576.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM053]
gi|394247098|gb|EJD92346.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM057]
gi|394271243|gb|EJE15739.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM031]
Length = 96
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ ETLE EL+KI I + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPTFQ---IGKGGINENMIQQISETLEKRELIKIHILQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+D+ + E T S +V IG +++Y+ S
Sbjct: 59 KDLAAIVAEQTQSELVQIIGSMIVLYKES 87
>gi|444918138|ref|ZP_21238217.1| RNA binding protein [Cystobacter fuscus DSM 2262]
gi|444710252|gb|ELW51239.1| RNA binding protein [Cystobacter fuscus DSM 2262]
Length = 96
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++++L + H L + +VG++GV++GV+ + + L +EL+K+KI+ P E
Sbjct: 3 LTGKQRRQLRALGHHLEPVV---IVGQAGVSEGVIAAVAQALHDHELIKVKINE-GPEER 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ ++L + TG+ + +G+TV++++
Sbjct: 59 HEAAEKLAQGTGAELAQLLGRTVLLFK 85
>gi|386287987|ref|ZP_10065153.1| RNA-binding protein containing KH domain, possibly ribosomal
protein [gamma proteobacterium BDW918]
gi|385278966|gb|EIF42912.1| RNA-binding protein containing KH domain, possibly ribosomal
protein [gamma proteobacterium BDW918]
Length = 102
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+PK + +KK L S H L + ++ G+++ V L+ +EL+K+K++ P
Sbjct: 1 MPKFSASDKKHLRSIGHKLSPVV---MIADKGLSESVALELDRALDDHELIKVKVNIAEP 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLT 119
E ++ QL A + ++ IG+ +IYRP+ T
Sbjct: 58 TERRALIDQLCIAHKALLIQAIGKIALIYRPAKT 91
>gi|365847641|ref|ZP_09388125.1| RNA-binding protein, YhbY family [Yokenella regensburgei ATCC
43003]
gi|364571892|gb|EHM49462.1| RNA-binding protein, YhbY family [Yokenella regensburgei ATCC
43003]
Length = 110
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + L+ +EL+K+KI
Sbjct: 15 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALDHHELIKVKIASEDRDT 71
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 72 KNLIVEAIVRETGACNVQVIGKTLVLYRPT 101
>gi|163814059|ref|ZP_02205451.1| hypothetical protein COPEUT_00212 [Coprococcus eutactus ATCC 27759]
gi|158450508|gb|EDP27503.1| RNA-binding protein, YhbY family [Coprococcus eutactus ATCC 27759]
Length = 95
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GKS +T S E LEA EL+KI + + C + +++ L E T S VV IG+ ++
Sbjct: 22 IGKSSLTPEFTASVAEALEARELVKISVLKNCLDDPKEIASMLSERTHSEVVQVIGRKIV 81
Query: 113 IYRPSLTRMKLE 124
+Y+ S R ++E
Sbjct: 82 LYKESKERKRIE 93
>gi|432373755|ref|ZP_19616787.1| RNA-binding protein YhbY [Escherichia coli KTE11]
gi|430893940|gb|ELC16242.1| RNA-binding protein YhbY [Escherichia coli KTE11]
Length = 110
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI
Sbjct: 15 NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRET 71
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 72 KTLIVEAIVRETGACNVQVIGKTLVLYRPT 101
>gi|414160962|ref|ZP_11417225.1| hypothetical protein HMPREF9310_01599 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876641|gb|EKS24539.1| hypothetical protein HMPREF9310_01599 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 96
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH + + +GK+G+ + ++ E LE EL+KI I + +
Sbjct: 2 LTGKQKRFLRSKAHHVNPTFQ---IGKAGLNENMIEQLDEILENRELIKIHILQNNMDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + + EAT S +V IG +++Y+ S
Sbjct: 59 SELARAVSEATNSELVQVIGSMIVLYKES 87
>gi|222529115|ref|YP_002572997.1| hypothetical protein Athe_1123 [Caldicellulosiruptor bescii DSM
6725]
gi|312127821|ref|YP_003992695.1| hypothetical protein Calhy_1611 [Caldicellulosiruptor
hydrothermalis 108]
gi|222455962|gb|ACM60224.1| protein of unknown function UPF0044 [Caldicellulosiruptor bescii
DSM 6725]
gi|311777840|gb|ADQ07326.1| protein of unknown function UPF0044 [Caldicellulosiruptor
hydrothermalis 108]
Length = 95
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ +L A+++ ++ +GK G+T+GV+ E L A EL+KI + + C E
Sbjct: 2 LTSKQRAKLRGMANTMDAIIR---IGKEGITEGVLKQIDEALTARELIKIALEKNCEIEP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + + E + V IG+ ++IYR S
Sbjct: 59 KEAIAYICEKLNAEPVQVIGRKIVIYRMS 87
>gi|423105057|ref|ZP_17092759.1| RNA-binding protein YhbY [Klebsiella oxytoca 10-5242]
gi|423110544|ref|ZP_17098239.1| RNA-binding protein YhbY [Klebsiella oxytoca 10-5243]
gi|423116543|ref|ZP_17104234.1| RNA-binding protein YhbY [Klebsiella oxytoca 10-5245]
gi|423122305|ref|ZP_17109989.1| RNA-binding protein YhbY [Klebsiella oxytoca 10-5246]
gi|423125962|ref|ZP_17113641.1| RNA-binding protein YhbY [Klebsiella oxytoca 10-5250]
gi|376378109|gb|EHS90873.1| RNA-binding protein YhbY [Klebsiella oxytoca 10-5245]
gi|376379109|gb|EHS91864.1| RNA-binding protein YhbY [Klebsiella oxytoca 10-5243]
gi|376381823|gb|EHS94559.1| RNA-binding protein YhbY [Klebsiella oxytoca 10-5242]
gi|376392631|gb|EHT05294.1| RNA-binding protein YhbY [Klebsiella oxytoca 10-5246]
gi|376398063|gb|EHT10691.1| RNA-binding protein YhbY [Klebsiella oxytoca 10-5250]
Length = 110
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 15 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRET 71
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 72 KTLIVEAIVRETGACNVQVIGKTLVLYRPT 101
>gi|442804003|ref|YP_007372152.1| RNA-binding protein YqeI [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442739853|gb|AGC67542.1| RNA-binding protein YqeI [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 96
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
SY SL + +GK G++D V+ F E LEA EL+K + + +V ++L
Sbjct: 8 SYLRSLANDIPAIFQIGKGGISDNVIKQFDEALEARELVKATVLKNSALSSREVCEELAA 67
Query: 98 ATGSAVVSQIGQTVIIYRPS 117
A G+ +V IG ++YR S
Sbjct: 68 ALGAEIVQVIGNRFVLYRES 87
>gi|450131394|ref|ZP_21869463.1| RNA-binding protein [Streptococcus mutans NLML8]
gi|449153854|gb|EMB57486.1| RNA-binding protein [Streptococcus mutans NLML8]
Length = 102
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHSLKPIVQ---IGKNGLNDQIKTSVRNALDARELIKVILLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HEVAEILEDEIGLETVLKIGRILILYKES 87
>gi|156935702|ref|YP_001439618.1| RNA-binding protein YhbY [Cronobacter sakazakii ATCC BAA-894]
gi|389842522|ref|YP_006344606.1| RNA-binding protein YhbY [Cronobacter sakazakii ES15]
gi|417789285|ref|ZP_12436938.1| RNA-binding protein YhbY [Cronobacter sakazakii E899]
gi|424802126|ref|ZP_18227668.1| FIG004454: RNA binding protein [Cronobacter sakazakii 696]
gi|429107236|ref|ZP_19169105.1| FIG004454: RNA binding protein [Cronobacter malonaticus 681]
gi|429112640|ref|ZP_19174410.1| FIG004454: RNA binding protein [Cronobacter malonaticus 507]
gi|429117945|ref|ZP_19178863.1| FIG004454: RNA binding protein [Cronobacter sakazakii 701]
gi|429118803|ref|ZP_19179550.1| FIG004454: RNA binding protein [Cronobacter sakazakii 680]
gi|449309817|ref|YP_007442173.1| RNA-binding protein YhbY [Cronobacter sakazakii SP291]
gi|156533956|gb|ABU78782.1| hypothetical protein ESA_03571 [Cronobacter sakazakii ATCC BAA-894]
gi|333956591|gb|EGL74241.1| RNA-binding protein YhbY [Cronobacter sakazakii E899]
gi|387852998|gb|AFK01096.1| RNA-binding protein YhbY [Cronobacter sakazakii ES15]
gi|423237847|emb|CCK09538.1| FIG004454: RNA binding protein [Cronobacter sakazakii 696]
gi|426293959|emb|CCJ95218.1| FIG004454: RNA binding protein [Cronobacter malonaticus 681]
gi|426313797|emb|CCK00523.1| FIG004454: RNA binding protein [Cronobacter malonaticus 507]
gi|426321074|emb|CCK04976.1| FIG004454: RNA binding protein [Cronobacter sakazakii 701]
gi|426326708|emb|CCK10287.1| FIG004454: RNA binding protein [Cronobacter sakazakii 680]
gi|449099850|gb|AGE87884.1| RNA-binding protein YhbY [Cronobacter sakazakii SP291]
Length = 97
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKI------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V + TG+ V IG+T+++YRPS
Sbjct: 53 TEDRETKTLIVDAIVRETGACNVQVIGKTLVLYRPS 88
>gi|451822859|ref|YP_007459133.1| putative RNA-binding protein containing KH domain [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451775659|gb|AGF46700.1| putative RNA-binding protein containing KH domain [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 93
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
++G G T+ V+ I L+A++L+KIKI+ E +D++K + E T ++ QIG+ V
Sbjct: 25 MIGNKGFTEQVLKEIITALKAHKLIKIKINTKEKQERQDIIKNICEKTNCQLIQQIGKIV 84
Query: 112 IIYRPS 117
+IY+ +
Sbjct: 85 VIYKHN 90
>gi|420367522|ref|ZP_14868303.1| RNA-binding protein YhbY [Shigella flexneri 1235-66]
gi|421846439|ref|ZP_16279587.1| RNA-binding protein YhbY [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|391323077|gb|EIQ79744.1| RNA-binding protein YhbY [Shigella flexneri 1235-66]
gi|411772316|gb|EKS55942.1| RNA-binding protein YhbY [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|455644669|gb|EMF23762.1| RNA-binding protein YhbY [Citrobacter freundii GTC 09479]
Length = 97
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRDT 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 59 KTLIVEAIVRETGACNVQVIGKTLVLYRPT 88
>gi|342164514|ref|YP_004769153.1| RNA-binding protein [Streptococcus pseudopneumoniae IS7493]
gi|341934396|gb|AEL11293.1| predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Streptococcus pseudopneumoniae
IS7493]
Length = 103
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH L ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHILKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILFKQS 88
>gi|395232741|ref|ZP_10410990.1| RNA-binding protein YhbY [Enterobacter sp. Ag1]
gi|394732822|gb|EJF32468.1| RNA-binding protein YhbY [Enterobacter sp. Ag1]
Length = 97
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKI------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V + TG+ V IG+T+++YRPS
Sbjct: 53 TEDRETKTLIVDAIVRETGACNVQVIGKTLVLYRPS 88
>gi|386718067|ref|YP_006184393.1| RNA binding protein [Stenotrophomonas maltophilia D457]
gi|384077629|emb|CCH12218.1| RNA binding protein [Stenotrophomonas maltophilia D457]
Length = 101
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + E LE +EL+K+K+
Sbjct: 5 LTASQTRFLRGQAHDLKALLQT---GGKGVTPAFIAELNEVLERHELVKVKVAAEDRDAR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ ++ EAT SA+V +IG ++YRPS
Sbjct: 62 DAMIGEIVEATESALVQRIGHVAVLYRPS 90
>gi|15613888|ref|NP_242191.1| hypothetical protein BH1325 [Bacillus halodurans C-125]
gi|10173941|dbj|BAB05044.1| BH1325 [Bacillus halodurans C-125]
Length = 96
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + +V E LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRAKAHHLQPIFQ---VGKGGVNENMVKQISEALEARELIKVSVLQNCEEDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++V + L + +V IG +++Y+ S
Sbjct: 59 DEVAEALATGAEAELVQVIGNVIVLYKES 87
>gi|422021003|ref|ZP_16367517.1| RNA-binding protein [Providencia sneebia DSM 19967]
gi|414099908|gb|EKT61541.1| RNA-binding protein [Providencia sneebia DSM 19967]
Length = 97
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L K+ + L S AH L ++G +G+T+GV+ +L +EL+K+KI GE
Sbjct: 2 NLNKKQIQHLKSLAHHLNP---VVMIGNNGLTEGVLAEIELSLTHHELIKVKI----AGE 54
Query: 88 LEDVVKQLEEA----TGSAVVSQIGQTVIIYRPSLTR 120
D + +A TG+A V IG+ ++IYRPS R
Sbjct: 55 DRDTKNLIADAIVRETGAANVQIIGKILVIYRPSADR 91
>gi|449961115|ref|ZP_21810792.1| RNA-binding protein [Streptococcus mutans 4VF1]
gi|449166973|gb|EMB69882.1| RNA-binding protein [Streptococcus mutans 4VF1]
Length = 102
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + TS L+A EL+K+ + + +
Sbjct: 2 LTSKQRAFLKSEAHSLKPIVQ---IGKNGLNDQIKTSVRNALDARELIKVTLLQNTDENI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HEVAEILEDEIGLETVLKIGRILILYKES 87
>gi|392330687|ref|ZP_10275302.1| RNA-binding protein [Streptococcus canis FSL Z3-227]
gi|391418366|gb|EIQ81178.1| RNA-binding protein [Streptococcus canis FSL Z3-227]
Length = 102
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ + + TS + L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHSLKPIVQ---IGKNGLNNQIKTSIRQALDARELIKVALLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 59 HEVAEILEEEIGCDTVLKIGRILILFKVS 87
>gi|384867432|ref|YP_005747628.1| RNA binding protein [Staphylococcus aureus subsp. aureus TCH60]
gi|312437937|gb|ADQ77008.1| possible RNA binding protein [Staphylococcus aureus subsp. aureus
TCH60]
Length = 96
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ +TLE EL+K+ + + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPIFQ---IGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + L AT S +V IG ++IYR S
Sbjct: 59 KELAETLSGATHSELVQVIGSMIVIYRES 87
>gi|157148749|ref|YP_001456068.1| RNA-binding protein YhbY [Citrobacter koseri ATCC BAA-895]
gi|157085954|gb|ABV15632.1| hypothetical protein CKO_04581 [Citrobacter koseri ATCC BAA-895]
Length = 116
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 21 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRET 77
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 78 KTLIVEAIVRETGACNVQVIGKTLVLYRPT 107
>gi|322377770|ref|ZP_08052259.1| putative RNA-binding protein YqeI [Streptococcus sp. M334]
gi|321281193|gb|EFX58204.1| putative RNA-binding protein YqeI [Streptococcus sp. M334]
Length = 103
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L AH+L ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNGQAHTLKPIIQ---IGKNGLNDQIKTSIRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILFKQS 88
>gi|397163470|ref|ZP_10486933.1| RNA-binding protein YhbY [Enterobacter radicincitans DSM 16656]
gi|396094936|gb|EJI92483.1| RNA-binding protein YhbY [Enterobacter radicincitans DSM 16656]
Length = 97
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
+V+ + TG+ V IG+T+++YRP+ R
Sbjct: 59 KTLIVEAIVRETGACNVQVIGKTLVLYRPTAER 91
>gi|432447791|ref|ZP_19690088.1| RNA-binding protein YhbY [Escherichia coli KTE191]
gi|433025051|ref|ZP_20213025.1| RNA-binding protein YhbY [Escherichia coli KTE106]
gi|430971762|gb|ELC88771.1| RNA-binding protein YhbY [Escherichia coli KTE191]
gi|431532449|gb|ELI09005.1| RNA-binding protein YhbY [Escherichia coli KTE106]
Length = 97
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 59 KSLIVEAIVRETGACNVQVIGKTLVLYRPT 88
>gi|429083710|ref|ZP_19146739.1| FIG004454: RNA binding protein [Cronobacter condimenti 1330]
gi|426547329|emb|CCJ72780.1| FIG004454: RNA binding protein [Cronobacter condimenti 1330]
Length = 97
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---MLGSNGLTEGVLAEIEQALEHHELIKVKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + TG+ V IG+T+++YRPS
Sbjct: 59 KTLIVDAIVRETGACNVQVIGKTLVLYRPS 88
>gi|16762060|ref|NP_457677.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143549|ref|NP_806891.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56415227|ref|YP_152302.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62181806|ref|YP_218223.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161506139|ref|YP_001573251.1| RNA-binding protein YhbY [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|161616305|ref|YP_001590270.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167552056|ref|ZP_02345809.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167995304|ref|ZP_02576394.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168231906|ref|ZP_02656964.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168237997|ref|ZP_02663055.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168243131|ref|ZP_02668063.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168262692|ref|ZP_02684665.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168463480|ref|ZP_02697397.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168819636|ref|ZP_02831636.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194446513|ref|YP_002042554.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194449616|ref|YP_002047326.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194472937|ref|ZP_03078921.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194737292|ref|YP_002116246.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197249374|ref|YP_002148222.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197265486|ref|ZP_03165560.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197364157|ref|YP_002143794.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198244680|ref|YP_002217270.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200386795|ref|ZP_03213407.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204931224|ref|ZP_03222018.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|213027548|ref|ZP_03341995.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
gi|213162025|ref|ZP_03347735.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213421312|ref|ZP_03354378.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213425424|ref|ZP_03358174.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213584092|ref|ZP_03365918.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213622211|ref|ZP_03374994.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213646995|ref|ZP_03377048.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213852788|ref|ZP_03382320.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|224585093|ref|YP_002638892.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238910091|ref|ZP_04653928.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289825809|ref|ZP_06544977.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|340000855|ref|YP_004731739.1| hypothetical protein SBG_2926 [Salmonella bongori NCTC 12419]
gi|374979321|ref|ZP_09720660.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|375003160|ref|ZP_09727500.1| hypothetical protein SEENIN0B_03528 [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|375116147|ref|ZP_09761317.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|375120781|ref|ZP_09765948.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|375125070|ref|ZP_09770234.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|378446684|ref|YP_005234316.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378956910|ref|YP_005214397.1| hypothetical protein SPUL_3306 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|378961389|ref|YP_005218875.1| hypothetical protein STBHUCCB_33980 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|378985893|ref|YP_005249049.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378990608|ref|YP_005253772.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|383497952|ref|YP_005398641.1| hypothetical protein UMN798_3588 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|386592982|ref|YP_006089382.1| CRS1 / YhbY (CRM) RNA binding protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|409247008|ref|YP_006887710.1| CRS2-associated factor 2, mitochondrial Flags: Precursor
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|416423871|ref|ZP_11691205.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416433534|ref|ZP_11696994.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416440937|ref|ZP_11701247.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416447937|ref|ZP_11706141.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416454503|ref|ZP_11710353.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416460977|ref|ZP_11715085.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416462714|ref|ZP_11715636.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416475235|ref|ZP_11720528.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416492603|ref|ZP_11727532.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416498668|ref|ZP_11730424.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416505818|ref|ZP_11734164.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416516100|ref|ZP_11738978.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416526936|ref|ZP_11742774.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416534131|ref|ZP_11746949.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416546591|ref|ZP_11753985.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416553491|ref|ZP_11757742.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416557648|ref|ZP_11759674.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416568324|ref|ZP_11764676.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416577470|ref|ZP_11769806.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416586116|ref|ZP_11775361.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416589290|ref|ZP_11776942.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416600933|ref|ZP_11784696.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416605407|ref|ZP_11786895.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416614888|ref|ZP_11793088.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416618513|ref|ZP_11794608.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416629750|ref|ZP_11800313.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416638425|ref|ZP_11803896.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416659213|ref|ZP_11814691.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416670521|ref|ZP_11820159.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416678878|ref|ZP_11822809.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416699896|ref|ZP_11828910.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416706507|ref|ZP_11831719.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416714057|ref|ZP_11837508.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416718702|ref|ZP_11840810.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416725807|ref|ZP_11846030.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416732932|ref|ZP_11850023.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416736446|ref|ZP_11852073.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416750639|ref|ZP_11859809.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416754926|ref|ZP_11861718.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416765650|ref|ZP_11868955.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416771457|ref|ZP_11872722.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417329017|ref|ZP_12113985.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|417343990|ref|ZP_12124444.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|417352463|ref|ZP_12129676.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|417360932|ref|ZP_12134943.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
gi|417368230|ref|ZP_12139855.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|417376094|ref|ZP_12145381.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|417386033|ref|ZP_12150844.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|417393775|ref|ZP_12156180.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|417429357|ref|ZP_12161003.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|417469993|ref|ZP_12166255.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|417483825|ref|ZP_12172207.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|417513824|ref|ZP_12177786.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|417520819|ref|ZP_12182655.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|417534185|ref|ZP_12188021.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|417542004|ref|ZP_12193578.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|418482436|ref|ZP_13051452.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418507264|ref|ZP_13073588.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418511417|ref|ZP_13077677.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|418759815|ref|ZP_13315992.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418765942|ref|ZP_13322021.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418771268|ref|ZP_13327275.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418774007|ref|ZP_13329980.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418778048|ref|ZP_13333962.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418786346|ref|ZP_13342162.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418788866|ref|ZP_13344658.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418794401|ref|ZP_13350122.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418797601|ref|ZP_13353287.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|418802017|ref|ZP_13357649.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|418806503|ref|ZP_13362075.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418810663|ref|ZP_13366203.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418824406|ref|ZP_13379768.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418831241|ref|ZP_13386199.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418837473|ref|ZP_13392347.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418842287|ref|ZP_13397097.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418847017|ref|ZP_13401782.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418851445|ref|ZP_13406157.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418855918|ref|ZP_13410566.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418857682|ref|ZP_13412307.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418862843|ref|ZP_13417382.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|418869493|ref|ZP_13423926.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|419786769|ref|ZP_14312484.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419793145|ref|ZP_14318768.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|421887015|ref|ZP_16318179.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|423141823|ref|ZP_17129461.1| hypothetical protein SEHO0A_03387 [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|25329776|pir||AI0902 conserved hypothetical protein STY3476 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16421856|gb|AAL22168.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16504363|emb|CAD07815.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139184|gb|AAO70751.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56129484|gb|AAV78990.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62129439|gb|AAX67142.1| putative RNA-binding protein containing KH domain [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|160867486|gb|ABX24109.1| hypothetical protein SARI_04327 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
gi|161365669|gb|ABX69437.1| hypothetical protein SPAB_04113 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194405176|gb|ACF65398.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194407920|gb|ACF68139.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194459301|gb|EDX48140.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194712794|gb|ACF92015.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195633616|gb|EDX52030.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197095634|emb|CAR61202.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197213077|gb|ACH50474.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197243741|gb|EDY26361.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197289071|gb|EDY28440.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|197939196|gb|ACH76529.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199603893|gb|EDZ02438.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204319991|gb|EDZ05197.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205323204|gb|EDZ11043.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205327002|gb|EDZ13766.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205333735|gb|EDZ20499.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205337825|gb|EDZ24589.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205343302|gb|EDZ30066.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205348350|gb|EDZ34981.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|224469621|gb|ACN47451.1| hypothetical protein SPC_3366 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261248463|emb|CBG26300.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|312914322|dbj|BAJ38296.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320087742|emb|CBY97506.1| CRS2-associated factor 2, mitochondrial Flags: Precursor
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|321225981|gb|EFX51035.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|322615301|gb|EFY12222.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618340|gb|EFY15231.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322622855|gb|EFY19699.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626823|gb|EFY23620.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631392|gb|EFY28152.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635341|gb|EFY32055.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643340|gb|EFY39904.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322647088|gb|EFY43589.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648891|gb|EFY45336.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322655083|gb|EFY51394.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322657686|gb|EFY53954.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664182|gb|EFY60380.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322667465|gb|EFY63627.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674713|gb|EFY70805.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675654|gb|EFY71727.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682290|gb|EFY78313.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684893|gb|EFY80891.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322716293|gb|EFZ07864.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|323195902|gb|EFZ81073.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323199019|gb|EFZ84116.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323204281|gb|EFZ89290.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323211319|gb|EFZ96163.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323214739|gb|EFZ99488.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323221219|gb|EGA05645.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323224040|gb|EGA08333.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323230311|gb|EGA14430.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233287|gb|EGA17381.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323239324|gb|EGA23374.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323242425|gb|EGA26451.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323246935|gb|EGA30901.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254132|gb|EGA37952.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323255249|gb|EGA39026.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323262712|gb|EGA46268.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323264022|gb|EGA47530.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269408|gb|EGA52863.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326625048|gb|EGE31393.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|326629320|gb|EGE35663.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|332990155|gb|AEF09138.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|339514217|emb|CCC31980.1| conserved hypothetical protein [Salmonella bongori NCTC 12419]
gi|353077848|gb|EHB43608.1| hypothetical protein SEENIN0B_03528 [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|353566179|gb|EHC31739.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Adelaide str. A4-669]
gi|353566501|gb|EHC31958.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Gaminara str. A4-567]
gi|353585414|gb|EHC45256.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Give str. S5-487]
gi|353587173|gb|EHC46555.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353594339|gb|EHC51880.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Inverness str. R8-3668]
gi|353604414|gb|EHC59209.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353607688|gb|EHC61489.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|353615604|gb|EHC67087.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353626302|gb|EHC74875.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. S5-403]
gi|353634660|gb|EHC81178.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|353635704|gb|EHC81944.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353642993|gb|EHC87292.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|353659200|gb|EHC99165.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|353659597|gb|EHC99442.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|357207521|gb|AET55567.1| hypothetical protein SPUL_3306 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|357954734|gb|EHJ80797.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|363555635|gb|EHL39859.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363556591|gb|EHL40804.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363562811|gb|EHL46900.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363562929|gb|EHL47016.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363567755|gb|EHL51753.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363577669|gb|EHL61488.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|363578497|gb|EHL62306.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|366063467|gb|EHN27685.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366081572|gb|EHN45515.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366084742|gb|EHN48642.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|374355261|gb|AEZ47022.1| hypothetical protein STBHUCCB_33980 [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|379050995|gb|EHY68887.1| hypothetical protein SEHO0A_03387 [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379983392|emb|CCF90452.1| putative RNA-binding protein [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|380464773|gb|AFD60176.1| hypothetical protein UMN798_3588 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|383800023|gb|AFH47105.1| CRS1 / YhbY (CRM) RNA binding protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|392617124|gb|EIW99549.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392620712|gb|EIX03078.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392733796|gb|EIZ90987.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392738660|gb|EIZ95800.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392745456|gb|EJA02489.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392748310|gb|EJA05297.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392753047|gb|EJA09987.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392756512|gb|EJA13408.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392761791|gb|EJA18610.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392761924|gb|EJA18742.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392769040|gb|EJA25786.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392779469|gb|EJA36138.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|392781611|gb|EJA38252.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392783120|gb|EJA39750.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392798993|gb|EJA55262.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392800437|gb|EJA56675.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392806858|gb|EJA62942.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392809488|gb|EJA65525.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392817592|gb|EJA73502.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392820268|gb|EJA76118.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392822669|gb|EJA78474.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392834240|gb|EJA89850.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392834751|gb|EJA90353.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392835956|gb|EJA91544.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
Length = 110
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 15 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRET 71
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + TG+ V IG+T+++YRP+
Sbjct: 72 KTLIVDAIVRETGACNVQVIGKTLVLYRPT 101
>gi|266625376|ref|ZP_06118311.1| RNA-binding protein YhbY [Clostridium hathewayi DSM 13479]
gi|288862716|gb|EFC95014.1| RNA-binding protein YhbY [Clostridium hathewayi DSM 13479]
Length = 97
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GKS +T + + E LEA EL+KI + + C + + L E T S VV IG+ ++
Sbjct: 22 IGKSSITPEITAAIAEALEARELIKITVLKNCLDDGNAIAATLAERTHSEVVQVIGRKIV 81
Query: 113 IYRPS 117
+Y+P+
Sbjct: 82 LYKPA 86
>gi|153003160|ref|YP_001377485.1| hypothetical protein Anae109_0283 [Anaeromyxobacter sp. Fw109-5]
gi|152026733|gb|ABS24501.1| protein of unknown function UPF0044 [Anaeromyxobacter sp. Fw109-5]
Length = 168
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 34 KKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVK 93
+K L + H L ++ VGK GVT+ V+ E L A+EL+K+KI P + +
Sbjct: 19 RKTLRAAGHHLSPVVQ---VGKEGVTEAVLRQLDEALSAHELVKVKIGTETPEDRFEAAD 75
Query: 94 QLEEATGSAVVSQIGQTVIIYR 115
+L +G+ V +G+T+++YR
Sbjct: 76 RLGADSGAQVAQILGRTILVYR 97
>gi|251811011|ref|ZP_04825484.1| RNA binding protein [Staphylococcus epidermidis BCM-HMP0060]
gi|282875977|ref|ZP_06284844.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis SK135]
gi|293366445|ref|ZP_06613122.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417655859|ref|ZP_12305550.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU028]
gi|417659737|ref|ZP_12309337.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU045]
gi|417908454|ref|ZP_12552211.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU037]
gi|417912138|ref|ZP_12555833.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU105]
gi|417913804|ref|ZP_12557467.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU109]
gi|251805521|gb|EES58178.1| RNA binding protein [Staphylococcus epidermidis BCM-HMP0060]
gi|281295002|gb|EFA87529.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis SK135]
gi|291319214|gb|EFE59583.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329735374|gb|EGG71666.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU045]
gi|329737109|gb|EGG73363.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU028]
gi|341651149|gb|EGS74954.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU105]
gi|341654826|gb|EGS78564.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU109]
gi|341655815|gb|EGS79538.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU037]
Length = 98
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ ETLE EL+KI I + +
Sbjct: 3 LTGKQKRYLRSLAHNIDPTFQ---IGKGGINENMIQQISETLEKRELIKIHILQNNFDDK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+D+ + + T S +V IG +++Y+ S
Sbjct: 60 KDLAAIVSQQTQSELVQIIGSMIVLYKES 88
>gi|299822866|ref|ZP_07054752.1| RNA-binding protein YhbY [Listeria grayi DSM 20601]
gi|299816395|gb|EFI83633.1| RNA-binding protein YhbY [Listeria grayi DSM 20601]
Length = 97
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L AH L + VGK GV ++T + LEA EL+K+ I + C E+V
Sbjct: 5 KQKRYLRKEAHKLEPIFQ---VGKGGVVPTMITQLNDVLEARELIKVSILQNCDVPKEEV 61
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
+ + T + +V IG+T+I+Y+ S T+
Sbjct: 62 AELITSRTHAELVQIIGRTIILYKESKTK 90
>gi|226941816|ref|YP_002796890.1| hypothetical protein LHK_02903 [Laribacter hongkongensis HLHK9]
gi|226716743|gb|ACO75881.1| CRS1_YhbY domain containing protein [Laribacter hongkongensis
HLHK9]
Length = 106
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 55/94 (58%), Gaps = 11/94 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+LT ++++ L AH+L + ++G +G++D V+ L+A+EL+K+++H G+
Sbjct: 4 ELTPEQRQYLKGLAHALNPVV---MIGNNGLSDSVIREIAVNLDAHELIKVRVH----GD 56
Query: 88 LEDV----VKQLEEATGSAVVSQIGQTVIIYRPS 117
+V Q+ + +A V IG+ ++IYRPS
Sbjct: 57 DREVRAALYGQICDDLDAAPVQMIGKLLVIYRPS 90
>gi|170765683|ref|ZP_02900494.1| putative RNA-binding protein [Escherichia albertii TW07627]
gi|170124829|gb|EDS93760.1| putative RNA-binding protein [Escherichia albertii TW07627]
Length = 97
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 59 KTLIVEAIVRETGACNVQVIGKTLVLYRPT 88
>gi|319778417|ref|YP_004129330.1| RNA binding protein [Taylorella equigenitalis MCE9]
gi|397662198|ref|YP_006502898.1| putative RNA-binding ribosomal protein [Taylorella equigenitalis
ATCC 35865]
gi|317108441|gb|ADU91187.1| RNA binding protein [Taylorella equigenitalis MCE9]
gi|394350377|gb|AFN36291.1| putative RNA-binding ribosomal protein [Taylorella equigenitalis
ATCC 35865]
gi|399115866|emb|CCG18670.1| putative RNA-binding ribosomal protein [Taylorella equigenitalis
14/56]
Length = 191
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ KE+ L S AH+L ++G +G+T+ V+ + L ++ L+KIKI
Sbjct: 9 KLSSKERSLLRSNAHNLKP---VVMIGDNGLTETVIKEIDQNLNSHGLIKIKISGDDKEY 65
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ ++ + GS +VS +G+ + +YRP+
Sbjct: 66 RLNIATEINQKLGSELVSHLGKIITLYRPN 95
>gi|325268101|ref|ZP_08134747.1| RNA-binding protein YhbY [Kingella denitrificans ATCC 33394]
gi|324980486|gb|EGC16152.1| RNA-binding protein YhbY [Kingella denitrificans ATCC 33394]
Length = 131
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 27 PKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPG 86
P LT +E EL + AH L + +VG+ G+TD V+ + L A+EL+K+++
Sbjct: 35 PLLTKQEITELKARAHHLNPVV---MVGQKGLTDAVIAETRQALHAHELIKVRVFGDDRM 91
Query: 87 ELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
E + + L ATG+ +V IG+ ++++R
Sbjct: 92 ERIAICEALCAATGAQLVQHIGKLLVLFR 120
>gi|429091552|ref|ZP_19154220.1| FIG004454: RNA binding protein [Cronobacter dublinensis 1210]
gi|429098474|ref|ZP_19160580.1| RNA binding protein [Cronobacter dublinensis 582]
gi|426284814|emb|CCJ86693.1| RNA binding protein [Cronobacter dublinensis 582]
gi|426743882|emb|CCJ80333.1| FIG004454: RNA binding protein [Cronobacter dublinensis 1210]
Length = 97
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIATEERET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + TG+ V IG+T+++YRPS
Sbjct: 59 KTLIVDAIVRETGACNVQVIGKTLVLYRPS 88
>gi|27468199|ref|NP_764836.1| hypothetical protein SE1281 [Staphylococcus epidermidis ATCC 12228]
gi|57867065|ref|YP_188738.1| hypothetical protein SERP1162 [Staphylococcus epidermidis RP62A]
gi|418605468|ref|ZP_13168792.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU041]
gi|418606018|ref|ZP_13169314.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU057]
gi|418609425|ref|ZP_13172577.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU065]
gi|418612783|ref|ZP_13175807.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU117]
gi|418616328|ref|ZP_13179253.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU120]
gi|418621442|ref|ZP_13184218.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU123]
gi|418625267|ref|ZP_13187920.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU125]
gi|418626403|ref|ZP_13189015.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU126]
gi|418629419|ref|ZP_13191927.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU127]
gi|418665189|ref|ZP_13226639.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU081]
gi|419769385|ref|ZP_14295479.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-250]
gi|419771693|ref|ZP_14297739.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-K]
gi|420165584|ref|ZP_14672275.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM088]
gi|420170301|ref|ZP_14676862.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM070]
gi|420172647|ref|ZP_14679146.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM067]
gi|420183256|ref|ZP_14689389.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM049]
gi|420187202|ref|ZP_14693223.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM039]
gi|420194892|ref|ZP_14700689.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM021]
gi|420197473|ref|ZP_14703197.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM020]
gi|420202366|ref|ZP_14707959.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM018]
gi|420209100|ref|ZP_14714538.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM003]
gi|420220540|ref|ZP_14725499.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH04008]
gi|420221620|ref|ZP_14726547.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH08001]
gi|420225791|ref|ZP_14730618.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH06004]
gi|420227384|ref|ZP_14732153.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH05003]
gi|420229698|ref|ZP_14734403.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH04003]
gi|420232109|ref|ZP_14736751.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH051668]
gi|420234756|ref|ZP_14739316.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH051475]
gi|421606911|ref|ZP_16048162.1| hypothetical protein B440_01143 [Staphylococcus epidermidis
AU12-03]
gi|27315745|gb|AAO04880.1|AE016748_114 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637723|gb|AAW54511.1| conserved hypothetical protein TIGR00253 [Staphylococcus
epidermidis RP62A]
gi|374402357|gb|EHQ73387.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU041]
gi|374407639|gb|EHQ78491.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU065]
gi|374409164|gb|EHQ79964.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU081]
gi|374409457|gb|EHQ80248.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU057]
gi|374817860|gb|EHR82035.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU117]
gi|374821154|gb|EHR85221.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU120]
gi|374825409|gb|EHR89345.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU125]
gi|374829386|gb|EHR93190.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU123]
gi|374832837|gb|EHR96542.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU126]
gi|374834122|gb|EHR97782.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU127]
gi|383358004|gb|EID35465.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-250]
gi|383360512|gb|EID37907.1| RNA-binding protein, YhbY family [Staphylococcus aureus subsp.
aureus IS-K]
gi|394235385|gb|EJD80957.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM088]
gi|394240639|gb|EJD86062.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM070]
gi|394241808|gb|EJD87217.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM067]
gi|394249719|gb|EJD94932.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM049]
gi|394256181|gb|EJE01114.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM039]
gi|394263952|gb|EJE08673.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM021]
gi|394266280|gb|EJE10926.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM020]
gi|394269774|gb|EJE14304.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM018]
gi|394279328|gb|EJE23636.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM003]
gi|394285893|gb|EJE29959.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH04008]
gi|394290246|gb|EJE34110.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH08001]
gi|394293225|gb|EJE36948.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH06004]
gi|394297190|gb|EJE40799.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH05003]
gi|394298992|gb|EJE42547.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH04003]
gi|394301831|gb|EJE45285.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH051668]
gi|394303999|gb|EJE47409.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH051475]
gi|406657380|gb|EKC83768.1| hypothetical protein B440_01143 [Staphylococcus epidermidis
AU12-03]
Length = 97
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ ETLE EL+KI I + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPTFQ---IGKGGINENMIQQISETLEKRELIKIHILQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+D+ + + T S +V IG +++Y+ S
Sbjct: 59 KDLAAIVSQQTQSELVQIIGSMIVLYKES 87
>gi|417709271|ref|ZP_12358296.1| CRS1 / YhbY domain protein [Shigella flexneri VA-6]
gi|420333106|ref|ZP_14834751.1| RNA-binding protein YhbY [Shigella flexneri K-1770]
gi|332998822|gb|EGK18418.1| CRS1 / YhbY domain protein [Shigella flexneri VA-6]
gi|391247596|gb|EIQ06843.1| RNA-binding protein YhbY [Shigella flexneri K-1770]
Length = 97
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKI------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V+ + TG+ V IG+T+++YRP+
Sbjct: 53 TEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPT 88
>gi|291459216|ref|ZP_06598606.1| putative RNA-binding protein YqeI [Oribacterium sp. oral taxon 078
str. F0262]
gi|291418470|gb|EFE92189.1| putative RNA-binding protein YqeI [Oribacterium sp. oral taxon 078
str. F0262]
Length = 105
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+ +T + S E +E NEL+KI+I + C + ++ + L E + S +V IG+ ++
Sbjct: 26 IGKNSLTAEFLQSLSENIEKNELIKIQILKNCEDDPMELAETLAERSHSEIVQLIGRKIV 85
Query: 113 IYRPS 117
+Y+P+
Sbjct: 86 LYKPA 90
>gi|410659227|ref|YP_006911598.1| hypothetical protein DHBDCA_p2586 [Dehalobacter sp. DCA]
gi|410662213|ref|YP_006914584.1| hypothetical protein DCF50_p2596 [Dehalobacter sp. CF]
gi|409021582|gb|AFV03613.1| hypothetical protein DHBDCA_p2586 [Dehalobacter sp. DCA]
gi|409024569|gb|AFV06599.1| hypothetical protein DCF50_p2596 [Dehalobacter sp. CF]
Length = 96
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + + + L +VGK +TD ++ + LEA EL+K + + C +
Sbjct: 2 LTGKQKRFLRAMGNEMEPIL---IVGKDEITDNMIKQAADALEARELIKGRALQNCADDP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
+++ L EAT S +V IG+ ++YR + + K+E
Sbjct: 59 KNIASGLAEATRSELVQVIGRNFLLYRKASEKPKIE 94
>gi|319944198|ref|ZP_08018474.1| RNA-binding protein YhbY [Lautropia mirabilis ATCC 51599]
gi|319742493|gb|EFV94904.1| RNA-binding protein YhbY [Lautropia mirabilis ATCC 51599]
Length = 98
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 26 LPKLTVK--EKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L ++ E+K LA+ AH L + L+G +G+T V+ L A+EL+K+++
Sbjct: 1 MPSLLLEKAERKALAAQAHPLNPVV---LLGAAGLTPAVLQEIDRALAAHELIKVRLAGM 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+ +Q+ ++T SA V IG +++YRP
Sbjct: 58 DRDARQAASEQISDSTSSAAVQLIGNVLVLYRP 90
>gi|407795084|ref|ZP_11142095.1| RNA-binding protein [Idiomarina xiamenensis 10-D-4]
gi|407209417|gb|EKE79313.1| RNA-binding protein [Idiomarina xiamenensis 10-D-4]
Length = 98
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 11/94 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+LT K+K+ L + AH L + L+G +G+T+GVV L +EL+K+K+ P E
Sbjct: 2 QLTNKQKQHLKALAHPLKPVV---LLGANGLTEGVVAEIELALSHHELIKVKV----PEE 54
Query: 88 LEDVVKQLEEA----TGSAVVSQIGQTVIIYRPS 117
++ +Q+ A TG++ V IG+T I+YRP+
Sbjct: 55 ERELRQQIYAAIVRETGASEVQVIGKTQILYRPA 88
>gi|347531793|ref|YP_004838556.1| hypothetical protein RHOM_07555 [Roseburia hominis A2-183]
gi|345501941|gb|AEN96624.1| hypothetical protein RHOM_07555 [Roseburia hominis A2-183]
Length = 98
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L A +L + +GK+ +T ++ + E LE EL+KI + + C +
Sbjct: 3 LTSKQRAYLGGCASTLDPIFQ---IGKASLTPEIIQALDEALEKRELIKISVLKNCADDP 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++ + + E T SAVV IG+ +I++R + K E
Sbjct: 60 REIAQVIAERTHSAVVKVIGKKIILFRQAKKNSKFE 95
>gi|15803720|ref|NP_289754.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. EDL933]
gi|15833313|ref|NP_312086.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. Sakai]
gi|16131070|ref|NP_417647.1| RNA binding protein associated with pre-50S ribosomal subunits
[Escherichia coli str. K-12 substr. MG1655]
gi|24114469|ref|NP_708979.1| RNA-binding protein YhbY [Shigella flexneri 2a str. 301]
gi|26249763|ref|NP_755803.1| RNA-binding protein YhbY [Escherichia coli CFT073]
gi|30064518|ref|NP_838689.1| RNA-binding protein YhbY [Shigella flexneri 2a str. 2457T]
gi|74313717|ref|YP_312136.1| RNA-binding protein YhbY [Shigella sonnei Ss046]
gi|82545582|ref|YP_409529.1| RNA-binding protein YhbY [Shigella boydii Sb227]
gi|91212602|ref|YP_542588.1| RNA-binding protein YhbY [Escherichia coli UTI89]
gi|110643420|ref|YP_671150.1| RNA-binding protein YhbY [Escherichia coli 536]
gi|110807046|ref|YP_690566.1| RNA-binding protein YhbY [Shigella flexneri 5 str. 8401]
gi|157157644|ref|YP_001464655.1| RNA-binding protein YhbY [Escherichia coli E24377A]
gi|157162663|ref|YP_001459981.1| RNA-binding protein YhbY [Escherichia coli HS]
gi|168752875|ref|ZP_02777897.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4113]
gi|168754162|ref|ZP_02779169.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4401]
gi|168765484|ref|ZP_02790491.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4501]
gi|168778233|ref|ZP_02803240.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4196]
gi|168781324|ref|ZP_02806331.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4076]
gi|168786066|ref|ZP_02811073.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC869]
gi|170018570|ref|YP_001723524.1| RNA-binding protein YhbY [Escherichia coli ATCC 8739]
gi|170082715|ref|YP_001732035.1| RNA-binding protein YhbY [Escherichia coli str. K-12 substr. DH10B]
gi|170681512|ref|YP_001745452.1| RNA-binding protein YhbY [Escherichia coli SMS-3-5]
gi|187732064|ref|YP_001881905.1| RNA-binding protein YhbY [Shigella boydii CDC 3083-94]
gi|188494950|ref|ZP_03002220.1| putative RNA-binding protein [Escherichia coli 53638]
gi|191168037|ref|ZP_03029837.1| putative RNA-binding protein [Escherichia coli B7A]
gi|194430227|ref|ZP_03062725.1| putative RNA-binding protein [Escherichia coli B171]
gi|195938399|ref|ZP_03083781.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. EC4024]
gi|208813080|ref|ZP_03254409.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4045]
gi|208818181|ref|ZP_03258501.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4042]
gi|209397701|ref|YP_002272650.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. EC4115]
gi|209920655|ref|YP_002294739.1| RNA-binding protein YhbY [Escherichia coli SE11]
gi|215488496|ref|YP_002330927.1| RNA-binding protein YhbY [Escherichia coli O127:H6 str. E2348/69]
gi|217327418|ref|ZP_03443501.1| putative RNA-binding protein [Escherichia coli O157:H7 str.
TW14588]
gi|218550463|ref|YP_002384254.1| RNA-binding protein YhbY [Escherichia fergusonii ATCC 35469]
gi|218555750|ref|YP_002388663.1| RNA-binding protein YhbY [Escherichia coli IAI1]
gi|218560250|ref|YP_002393163.1| RNA-binding protein YhbY [Escherichia coli S88]
gi|218691470|ref|YP_002399682.1| RNA-binding protein YhbY [Escherichia coli ED1a]
gi|218696885|ref|YP_002404552.1| RNA-binding protein YhbY [Escherichia coli 55989]
gi|218701949|ref|YP_002409578.1| RNA-binding protein YhbY [Escherichia coli IAI39]
gi|218706800|ref|YP_002414319.1| RNA-binding protein YhbY [Escherichia coli UMN026]
gi|222157892|ref|YP_002558031.1| RNA-binding protein yhbY [Escherichia coli LF82]
gi|227887901|ref|ZP_04005706.1| RNA-binding protein YhbY [Escherichia coli 83972]
gi|237706068|ref|ZP_04536549.1| RNA-binding protein yhbY [Escherichia sp. 3_2_53FAA]
gi|238902282|ref|YP_002928078.1| RNA-binding protein YhbY [Escherichia coli BW2952]
gi|251786450|ref|YP_003000754.1| RNA-binding protein [Escherichia coli BL21(DE3)]
gi|253771986|ref|YP_003034817.1| RNA-binding protein YhbY [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254163122|ref|YP_003046230.1| RNA-binding protein YhbY [Escherichia coli B str. REL606]
gi|254289872|ref|YP_003055620.1| RNA-binding protein [Escherichia coli BL21(DE3)]
gi|254795129|ref|YP_003079966.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. TW14359]
gi|260845993|ref|YP_003223771.1| RNA-binding protein [Escherichia coli O103:H2 str. 12009]
gi|260857307|ref|YP_003231198.1| RNA-binding protein YhbY [Escherichia coli O26:H11 str. 11368]
gi|260869931|ref|YP_003236333.1| putative RNA-binding protein [Escherichia coli O111:H- str. 11128]
gi|261228191|ref|ZP_05942472.1| predicted RNA-binding protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255047|ref|ZP_05947580.1| putative RNA-binding protein [Escherichia coli O157:H7 str.
FRIK966]
gi|291284554|ref|YP_003501372.1| hypothetical protein G2583_3905 [Escherichia coli O55:H7 str.
CB9615]
gi|293406789|ref|ZP_06650715.1| RNA-binding protein yhbY [Escherichia coli FVEC1412]
gi|293412552|ref|ZP_06655275.1| hypothetical protein ECEG_02567 [Escherichia coli B354]
gi|293416610|ref|ZP_06659249.1| hypothetical protein ECDG_03369 [Escherichia coli B185]
gi|293449514|ref|ZP_06663935.1| hypothetical protein ECCG_02546 [Escherichia coli B088]
gi|297520550|ref|ZP_06938936.1| RNA-binding protein YhbY [Escherichia coli OP50]
gi|298382530|ref|ZP_06992127.1| RNA-binding protein YhbY [Escherichia coli FVEC1302]
gi|300817567|ref|ZP_07097783.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
107-1]
gi|300823856|ref|ZP_07103980.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
119-7]
gi|300897945|ref|ZP_07116323.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
198-1]
gi|300904367|ref|ZP_07122219.1| hypothetical protein HMPREF9536_02450 [Escherichia coli MS 84-1]
gi|300918938|ref|ZP_07135496.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
115-1]
gi|300926079|ref|ZP_07141898.1| hypothetical protein HMPREF9548_04104 [Escherichia coli MS 182-1]
gi|300929872|ref|ZP_07145317.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
187-1]
gi|300938092|ref|ZP_07152869.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS 21-1]
gi|300948831|ref|ZP_07162898.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
116-1]
gi|300955766|ref|ZP_07168110.1| hypothetical protein HMPREF9547_01627 [Escherichia coli MS 175-1]
gi|300980087|ref|ZP_07174837.1| hypothetical protein HMPREF9553_01514 [Escherichia coli MS 200-1]
gi|300990827|ref|ZP_07179354.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS 45-1]
gi|301022035|ref|ZP_07185978.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS 69-1]
gi|301025975|ref|ZP_07189458.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
196-1]
gi|301047976|ref|ZP_07195019.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
185-1]
gi|301301762|ref|ZP_07207896.1| hypothetical protein HMPREF9347_00320 [Escherichia coli MS 124-1]
gi|301326395|ref|ZP_07219751.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS 78-1]
gi|301644891|ref|ZP_07244862.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
146-1]
gi|306816478|ref|ZP_07450610.1| RNA-binding protein YhbY [Escherichia coli NC101]
gi|307313115|ref|ZP_07592741.1| protein of unknown function UPF0044 [Escherichia coli W]
gi|309793757|ref|ZP_07688183.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
145-7]
gi|312968482|ref|ZP_07782691.1| CRS1 / YhbY domain protein [Escherichia coli 2362-75]
gi|312972546|ref|ZP_07786720.1| CRS1 / YhbY domain protein [Escherichia coli 1827-70]
gi|331643878|ref|ZP_08345009.1| RNA-binding protein YhbY [Escherichia coli H736]
gi|331648980|ref|ZP_08350068.1| RNA-binding protein YhbY [Escherichia coli M605]
gi|331654784|ref|ZP_08355784.1| RNA-binding protein YhbY [Escherichia coli M718]
gi|331659467|ref|ZP_08360409.1| RNA-binding protein YhbY [Escherichia coli TA206]
gi|331664792|ref|ZP_08365697.1| RNA-binding protein YhbY [Escherichia coli TA143]
gi|331670007|ref|ZP_08370852.1| RNA-binding protein YhbY [Escherichia coli TA271]
gi|331679259|ref|ZP_08379931.1| RNA-binding protein YhbY [Escherichia coli H591]
gi|331684827|ref|ZP_08385419.1| RNA-binding protein YhbY [Escherichia coli H299]
gi|332279989|ref|ZP_08392402.1| RNA-binding protein [Shigella sp. D9]
gi|366160429|ref|ZP_09460291.1| RNA-binding protein YhbY [Escherichia sp. TW09308]
gi|378711365|ref|YP_005276258.1| hypothetical protein [Escherichia coli KO11FL]
gi|383180360|ref|YP_005458365.1| RNA-binding protein YhbY [Shigella sonnei 53G]
gi|384544776|ref|YP_005728840.1| RNA-binding protein yhbY [Shigella flexneri 2002017]
gi|386282285|ref|ZP_10059938.1| RNA-binding protein YhbY [Escherichia sp. 4_1_40B]
gi|386594104|ref|YP_006090504.1| hypothetical protein [Escherichia coli DH1]
gi|386601206|ref|YP_006102712.1| putative RNA-binding protein [Escherichia coli IHE3034]
gi|386602737|ref|YP_006109037.1| RNA-binding protein YhbY [Escherichia coli UM146]
gi|386610569|ref|YP_006126055.1| RNA-binding protein [Escherichia coli W]
gi|386615967|ref|YP_006135633.1| hypothetical protein UMNK88_3941 [Escherichia coli UMNK88]
gi|386620793|ref|YP_006140373.1| RNA binding protein [Escherichia coli NA114]
gi|386625986|ref|YP_006145714.1| RNA binding protein associated with pre-50S ribosomal subunits
[Escherichia coli O7:K1 str. CE10]
gi|386631062|ref|YP_006150782.1| RNA-binding protein YhbY [Escherichia coli str. 'clone D i2']
gi|386635982|ref|YP_006155701.1| RNA-binding protein YhbY [Escherichia coli str. 'clone D i14']
gi|386640782|ref|YP_006107580.1| putative RNA-binding protein [Escherichia coli ABU 83972]
gi|386699852|ref|YP_006163689.1| RNA-binding protein YhbY [Escherichia coli KO11FL]
gi|386711087|ref|YP_006174808.1| RNA-binding protein YhbY [Escherichia coli W]
gi|387508584|ref|YP_006160840.1| RNA-binding protein YhbY [Escherichia coli O55:H7 str. RM12579]
gi|387608903|ref|YP_006097759.1| hypothetical protein EC042_3471 [Escherichia coli 042]
gi|387613870|ref|YP_006116986.1| hypothetical protein ETEC_3445 [Escherichia coli ETEC H10407]
gi|387618476|ref|YP_006121498.1| RNA-binding protein YhbY [Escherichia coli O83:H1 str. NRG 857C]
gi|387622842|ref|YP_006130470.1| hypothetical protein ECDH1ME8569_3069 [Escherichia coli DH1]
gi|387831065|ref|YP_003351002.1| hypothetical protein ECSF_3012 [Escherichia coli SE15]
gi|387884364|ref|YP_006314666.1| RNA-binding protein YhbY [Escherichia coli Xuzhou21]
gi|388479173|ref|YP_491365.1| RNA-binding protein [Escherichia coli str. K-12 substr. W3110]
gi|404376559|ref|ZP_10981717.1| RNA-binding protein YhbY [Escherichia sp. 1_1_43]
gi|407471154|ref|YP_006782403.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407480189|ref|YP_006777338.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 2011C-3493]
gi|410480750|ref|YP_006768296.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414577969|ref|ZP_11435142.1| RNA-binding protein YhbY [Shigella sonnei 3233-85]
gi|415776345|ref|ZP_11487929.1| CRS1 / YhbY domain protein [Escherichia coli 3431]
gi|415787460|ref|ZP_11494088.1| CRS1 / YhbY domain protein [Escherichia coli EPECa14]
gi|415795657|ref|ZP_11497170.1| CRS1 / YhbY domain protein [Escherichia coli E128010]
gi|415811185|ref|ZP_11503535.1| CRS1 / YhbY domain protein [Escherichia coli LT-68]
gi|415820519|ref|ZP_11509626.1| CRS1 / YhbY domain protein [Escherichia coli OK1180]
gi|415830703|ref|ZP_11516571.1| CRS1 / YhbY domain protein [Escherichia coli OK1357]
gi|415839212|ref|ZP_11521030.1| CRS1 / YhbY domain protein [Escherichia coli RN587/1]
gi|415851021|ref|ZP_11527816.1| CRS1 / YhbY domain protein [Shigella sonnei 53G]
gi|415857249|ref|ZP_11532023.1| CRS1 / YhbY domain protein [Shigella flexneri 2a str. 2457T]
gi|415861805|ref|ZP_11535415.1| RNA-binding protein YhbY [Escherichia coli MS 85-1]
gi|415875702|ref|ZP_11542381.1| RNA-binding protein YhbY [Escherichia coli MS 79-10]
gi|416270034|ref|ZP_11642624.1| RNA-binding protein YhbY [Shigella dysenteriae CDC 74-1112]
gi|416281395|ref|ZP_11645791.1| hypothetical protein SGB_01325 [Shigella boydii ATCC 9905]
gi|416294226|ref|ZP_11650725.1| hypothetical protein SGF_01115 [Shigella flexneri CDC 796-83]
gi|416308490|ref|ZP_11655166.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. 1044]
gi|416322353|ref|ZP_11664201.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. EC1212]
gi|416332589|ref|ZP_11670500.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. 1125]
gi|416337239|ref|ZP_11673665.1| RNA-binding protein YhbY [Escherichia coli WV_060327]
gi|416341105|ref|ZP_11675826.1| hypothetical protein ECoL_00722 [Escherichia coli EC4100B]
gi|416777679|ref|ZP_11875330.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. G5101]
gi|416789073|ref|ZP_11880255.1| RNA-binding protein YhbY [Escherichia coli O157:H- str. 493-89]
gi|416800982|ref|ZP_11885160.1| RNA-binding protein YhbY [Escherichia coli O157:H- str. H 2687]
gi|416811614|ref|ZP_11889971.1| RNA-binding protein YhbY [Escherichia coli O55:H7 str. 3256-97]
gi|416822122|ref|ZP_11894629.1| RNA-binding protein YhbY [Escherichia coli O55:H7 str. USDA 5905]
gi|416832514|ref|ZP_11899725.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. LSU-61]
gi|416899512|ref|ZP_11928979.1| CRS1 / YhbY domain protein [Escherichia coli STEC_7v]
gi|417086880|ref|ZP_11953977.1| RNA-binding protein YhbY [Escherichia coli cloneA_i1]
gi|417117614|ref|ZP_11968475.1| RNA-binding protein, YhbY family [Escherichia coli 1.2741]
gi|417123610|ref|ZP_11972520.1| RNA-binding protein, YhbY family [Escherichia coli 97.0246]
gi|417133231|ref|ZP_11978016.1| RNA-binding protein, YhbY family [Escherichia coli 5.0588]
gi|417138595|ref|ZP_11982246.1| RNA-binding protein, YhbY family [Escherichia coli 97.0259]
gi|417147247|ref|ZP_11988094.1| RNA-binding protein, YhbY family [Escherichia coli 1.2264]
gi|417158105|ref|ZP_11995729.1| RNA-binding protein, YhbY family [Escherichia coli 96.0497]
gi|417163008|ref|ZP_11998338.1| RNA-binding protein, YhbY family [Escherichia coli 99.0741]
gi|417176096|ref|ZP_12005892.1| RNA-binding protein, YhbY family [Escherichia coli 3.2608]
gi|417184435|ref|ZP_12010127.1| RNA-binding protein, YhbY family [Escherichia coli 93.0624]
gi|417197571|ref|ZP_12016505.1| RNA-binding protein, YhbY family [Escherichia coli 4.0522]
gi|417210944|ref|ZP_12021361.1| RNA-binding protein, YhbY family [Escherichia coli JB1-95]
gi|417222648|ref|ZP_12026088.1| RNA-binding protein, YhbY family [Escherichia coli 96.154]
gi|417228265|ref|ZP_12030023.1| RNA-binding protein, YhbY family [Escherichia coli 5.0959]
gi|417245129|ref|ZP_12038868.1| RNA-binding protein, YhbY family [Escherichia coli 9.0111]
gi|417249283|ref|ZP_12041067.1| RNA-binding protein, YhbY family [Escherichia coli 4.0967]
gi|417264401|ref|ZP_12051795.1| RNA-binding protein, YhbY family [Escherichia coli 2.3916]
gi|417267612|ref|ZP_12054973.1| RNA-binding protein, YhbY family [Escherichia coli 3.3884]
gi|417271260|ref|ZP_12058609.1| RNA-binding protein, YhbY family [Escherichia coli 2.4168]
gi|417276205|ref|ZP_12063536.1| RNA-binding protein, YhbY family [Escherichia coli 3.2303]
gi|417281044|ref|ZP_12068344.1| RNA-binding protein, YhbY family [Escherichia coli 3003]
gi|417285353|ref|ZP_12072644.1| RNA-binding protein, YhbY family [Escherichia coli TW07793]
gi|417291948|ref|ZP_12079229.1| RNA-binding protein, YhbY family [Escherichia coli B41]
gi|417296535|ref|ZP_12083782.1| RNA-binding protein, YhbY family [Escherichia coli 900105 (10e)]
gi|417309710|ref|ZP_12096540.1| hypothetical protein PPECC33_31120 [Escherichia coli PCN033]
gi|417582796|ref|ZP_12233597.1| CRS1 / YhbY domain protein [Escherichia coli STEC_B2F1]
gi|417588292|ref|ZP_12239056.1| CRS1 / YhbY domain protein [Escherichia coli STEC_C165-02]
gi|417593583|ref|ZP_12244274.1| CRS1 / YhbY domain protein [Escherichia coli 2534-86]
gi|417598588|ref|ZP_12249216.1| CRS1 / YhbY domain protein [Escherichia coli 3030-1]
gi|417604064|ref|ZP_12254629.1| CRS1 / YhbY domain protein [Escherichia coli STEC_94C]
gi|417609871|ref|ZP_12260369.1| CRS1 / YhbY domain protein [Escherichia coli STEC_DG131-3]
gi|417614784|ref|ZP_12265239.1| CRS1 / YhbY domain protein [Escherichia coli STEC_EH250]
gi|417619784|ref|ZP_12270192.1| CRS1 / YhbY domain protein [Escherichia coli G58-1]
gi|417625266|ref|ZP_12275559.1| CRS1 / YhbY domain protein [Escherichia coli STEC_H.1.8]
gi|417630634|ref|ZP_12280869.1| CRS1 / YhbY domain protein [Escherichia coli STEC_MHI813]
gi|417636273|ref|ZP_12286483.1| CRS1 / YhbY domain protein [Escherichia coli STEC_S1191]
gi|417641085|ref|ZP_12291219.1| CRS1 / YhbY domain protein [Escherichia coli TX1999]
gi|417663761|ref|ZP_12313341.1| RNA binding protein [Escherichia coli AA86]
gi|417668667|ref|ZP_12318208.1| CRS1 / YhbY domain protein [Escherichia coli STEC_O31]
gi|417674167|ref|ZP_12323604.1| CRS1 / YhbY domain protein [Shigella dysenteriae 155-74]
gi|417683912|ref|ZP_12333254.1| CRS1 / YhbY domain protein [Shigella boydii 3594-74]
gi|417691530|ref|ZP_12340740.1| CRS1 / YhbY domain protein [Shigella boydii 5216-82]
gi|417703760|ref|ZP_12352864.1| CRS1 / YhbY domain protein [Shigella flexneri K-218]
gi|417714236|ref|ZP_12363194.1| CRS1 / YhbY domain protein [Shigella flexneri K-272]
gi|417724882|ref|ZP_12373678.1| CRS1 / YhbY domain protein [Shigella flexneri K-304]
gi|417730140|ref|ZP_12378831.1| CRS1 / YhbY domain protein [Shigella flexneri K-671]
gi|417735036|ref|ZP_12383683.1| CRS1 / YhbY domain protein [Shigella flexneri 2747-71]
gi|417740050|ref|ZP_12388622.1| CRS1 / YhbY domain protein [Shigella flexneri 4343-70]
gi|417745094|ref|ZP_12393615.1| CRS1 / YhbY domain protein [Shigella flexneri 2930-71]
gi|417757537|ref|ZP_12405603.1| CRS1 / YhbY domain protein [Escherichia coli DEC2B]
gi|417806827|ref|ZP_12453759.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. LB226692]
gi|417829660|ref|ZP_12476205.1| CRS1 / YhbY domain protein [Shigella flexneri J1713]
gi|417834574|ref|ZP_12481016.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 01-09591]
gi|417865995|ref|ZP_12511038.1| yhbY [Escherichia coli O104:H4 str. C227-11]
gi|417945983|ref|ZP_12589209.1| RNA-binding protein YhbY [Escherichia coli XH140A]
gi|417977256|ref|ZP_12618042.1| RNA-binding protein YhbY [Escherichia coli XH001]
gi|418040922|ref|ZP_12679154.1| RNA-binding protein YhbY [Escherichia coli W26]
gi|418258688|ref|ZP_12881884.1| CRS1 / YhbY domain protein [Shigella flexneri 6603-63]
gi|418268655|ref|ZP_12887324.1| CRS1 / YhbY domain protein [Shigella sonnei str. Moseley]
gi|418304813|ref|ZP_12916607.1| CRS1 / YhbY domain protein [Escherichia coli UMNF18]
gi|418941598|ref|ZP_13494920.1| RNA-binding protein YhbY [Escherichia coli O157:H43 str. T22]
gi|418956437|ref|ZP_13508362.1| RNA-binding protein YhbY [Escherichia coli J53]
gi|418998502|ref|ZP_13546087.1| CRS1 / YhbY domain protein [Escherichia coli DEC1A]
gi|419003913|ref|ZP_13551426.1| CRS1 / YhbY domain protein [Escherichia coli DEC1B]
gi|419009584|ref|ZP_13557003.1| CRS1 / YhbY domain protein [Escherichia coli DEC1C]
gi|419015166|ref|ZP_13562507.1| RNA-binding protein YhbY [Escherichia coli DEC1D]
gi|419020216|ref|ZP_13567516.1| CRS1 / YhbY domain protein [Escherichia coli DEC1E]
gi|419025678|ref|ZP_13572898.1| RNA-binding protein YhbY [Escherichia coli DEC2A]
gi|419030810|ref|ZP_13577959.1| CRS1 / YhbY domain protein [Escherichia coli DEC2C]
gi|419036462|ref|ZP_13583539.1| CRS1 / YhbY domain protein [Escherichia coli DEC2D]
gi|419041515|ref|ZP_13588534.1| CRS1 / YhbY domain protein [Escherichia coli DEC2E]
gi|419047021|ref|ZP_13593955.1| CRS1 / YhbY domain protein [Escherichia coli DEC3A]
gi|419052956|ref|ZP_13599823.1| CRS1 / YhbY domain protein [Escherichia coli DEC3B]
gi|419058954|ref|ZP_13605756.1| CRS1 / YhbY domain protein [Escherichia coli DEC3C]
gi|419064451|ref|ZP_13611173.1| CRS1 / YhbY domain protein [Escherichia coli DEC3D]
gi|419071401|ref|ZP_13617014.1| CRS1 / YhbY domain protein [Escherichia coli DEC3E]
gi|419077016|ref|ZP_13622519.1| CRS1 / YhbY domain protein [Escherichia coli DEC3F]
gi|419082430|ref|ZP_13627876.1| CRS1 / YhbY domain protein [Escherichia coli DEC4A]
gi|419088259|ref|ZP_13633611.1| CRS1 / YhbY domain protein [Escherichia coli DEC4B]
gi|419094211|ref|ZP_13639491.1| CRS1 / YhbY domain protein [Escherichia coli DEC4C]
gi|419100039|ref|ZP_13645231.1| CRS1 / YhbY domain protein [Escherichia coli DEC4D]
gi|419105804|ref|ZP_13650929.1| CRS1 / YhbY domain protein [Escherichia coli DEC4E]
gi|419111229|ref|ZP_13656281.1| CRS1 / YhbY domain protein [Escherichia coli DEC4F]
gi|419116727|ref|ZP_13661739.1| CRS1 / YhbY domain protein [Escherichia coli DEC5A]
gi|419122442|ref|ZP_13667385.1| CRS1 / YhbY domain protein [Escherichia coli DEC5B]
gi|419127836|ref|ZP_13672711.1| CRS1 / YhbY domain protein [Escherichia coli DEC5C]
gi|419133291|ref|ZP_13678119.1| CRS1 / YhbY domain protein [Escherichia coli DEC5D]
gi|419138447|ref|ZP_13683238.1| RNA-binding protein YhbY [Escherichia coli DEC5E]
gi|419144254|ref|ZP_13688986.1| RNA-binding protein YhbY [Escherichia coli DEC6A]
gi|419150027|ref|ZP_13694676.1| CRS1 / YhbY domain protein [Escherichia coli DEC6B]
gi|419155650|ref|ZP_13700207.1| RNA-binding protein YhbY [Escherichia coli DEC6C]
gi|419161002|ref|ZP_13705500.1| RNA-binding protein YhbY [Escherichia coli DEC6D]
gi|419166052|ref|ZP_13710505.1| CRS1 / YhbY domain protein [Escherichia coli DEC6E]
gi|419172021|ref|ZP_13715902.1| RNA-binding protein YhbY [Escherichia coli DEC7A]
gi|419176646|ref|ZP_13720458.1| CRS1 / YhbY domain protein [Escherichia coli DEC7B]
gi|419182585|ref|ZP_13726195.1| CRS1 / YhbY domain protein [Escherichia coli DEC7C]
gi|419188203|ref|ZP_13731710.1| CRS1 / YhbY domain protein [Escherichia coli DEC7D]
gi|419193330|ref|ZP_13736777.1| RNA-binding protein YhbY [Escherichia coli DEC7E]
gi|419198886|ref|ZP_13742181.1| RNA-binding protein YhbY [Escherichia coli DEC8A]
gi|419203538|ref|ZP_13746736.1| CRS1 / YhbY domain protein [Escherichia coli DEC8B]
gi|419211634|ref|ZP_13754703.1| CRS1 / YhbY domain protein [Escherichia coli DEC8C]
gi|419217573|ref|ZP_13760569.1| CRS1 / YhbY domain protein [Escherichia coli DEC8D]
gi|419223330|ref|ZP_13766244.1| CRS1 / YhbY domain protein [Escherichia coli DEC8E]
gi|419228778|ref|ZP_13771621.1| CRS1 / YhbY domain protein [Escherichia coli DEC9A]
gi|419234341|ref|ZP_13777110.1| CRS1 / YhbY domain protein [Escherichia coli DEC9B]
gi|419239749|ref|ZP_13782457.1| CRS1 / YhbY domain protein [Escherichia coli DEC9C]
gi|419245247|ref|ZP_13787881.1| CRS1 / YhbY domain protein [Escherichia coli DEC9D]
gi|419251108|ref|ZP_13793677.1| CRS1 / YhbY domain protein [Escherichia coli DEC9E]
gi|419256785|ref|ZP_13799288.1| CRS1 / YhbY domain protein [Escherichia coli DEC10A]
gi|419263086|ref|ZP_13805494.1| CRS1 / YhbY domain protein [Escherichia coli DEC10B]
gi|419269134|ref|ZP_13811478.1| CRS1 / YhbY domain protein [Escherichia coli DEC10C]
gi|419274541|ref|ZP_13816831.1| CRS1 / YhbY domain protein [Escherichia coli DEC10D]
gi|419279826|ref|ZP_13822069.1| CRS1 / YhbY domain protein [Escherichia coli DEC10E]
gi|419286092|ref|ZP_13828256.1| CRS1 / YhbY domain protein [Escherichia coli DEC10F]
gi|419291379|ref|ZP_13833465.1| CRS1 / YhbY domain protein [Escherichia coli DEC11A]
gi|419296665|ref|ZP_13838704.1| CRS1 / YhbY domain protein [Escherichia coli DEC11B]
gi|419302182|ref|ZP_13844175.1| RNA-binding protein YhbY [Escherichia coli DEC11C]
gi|419308167|ref|ZP_13850062.1| RNA-binding protein YhbY [Escherichia coli DEC11D]
gi|419313202|ref|ZP_13855061.1| RNA-binding protein YhbY [Escherichia coli DEC11E]
gi|419318630|ref|ZP_13860429.1| RNA-binding protein YhbY [Escherichia coli DEC12A]
gi|419324899|ref|ZP_13866587.1| CRS1 / YhbY domain protein [Escherichia coli DEC12B]
gi|419330835|ref|ZP_13872433.1| RNA-binding protein YhbY [Escherichia coli DEC12C]
gi|419336324|ref|ZP_13877842.1| CRS1 / YhbY domain protein [Escherichia coli DEC12D]
gi|419341737|ref|ZP_13883193.1| CRS1 / YhbY domain protein [Escherichia coli DEC12E]
gi|419346931|ref|ZP_13888302.1| CRS1 / YhbY domain protein [Escherichia coli DEC13A]
gi|419351399|ref|ZP_13892730.1| CRS1 / YhbY domain protein [Escherichia coli DEC13B]
gi|419356870|ref|ZP_13898118.1| CRS1 / YhbY domain protein [Escherichia coli DEC13C]
gi|419361850|ref|ZP_13903061.1| CRS1 / YhbY domain protein [Escherichia coli DEC13D]
gi|419366897|ref|ZP_13908049.1| CRS1 / YhbY domain protein [Escherichia coli DEC13E]
gi|419371757|ref|ZP_13912867.1| RNA-binding protein YhbY [Escherichia coli DEC14A]
gi|419377253|ref|ZP_13918273.1| CRS1 / YhbY domain protein [Escherichia coli DEC14B]
gi|419382589|ref|ZP_13923533.1| CRS1 / YhbY domain protein [Escherichia coli DEC14C]
gi|419387878|ref|ZP_13928748.1| CRS1 / YhbY domain protein [Escherichia coli DEC14D]
gi|419393336|ref|ZP_13934138.1| CRS1 / YhbY domain protein [Escherichia coli DEC15A]
gi|419398438|ref|ZP_13939201.1| CRS1 / YhbY domain protein [Escherichia coli DEC15B]
gi|419403720|ref|ZP_13944440.1| CRS1 / YhbY domain protein [Escherichia coli DEC15C]
gi|419408878|ref|ZP_13949564.1| CRS1 / YhbY domain protein [Escherichia coli DEC15D]
gi|419414427|ref|ZP_13955065.1| CRS1 / YhbY domain protein [Escherichia coli DEC15E]
gi|419702012|ref|ZP_14229610.1| RNA-binding protein YhbY [Escherichia coli SCI-07]
gi|419805309|ref|ZP_14330448.1| RNA-binding protein YhbY [Escherichia coli AI27]
gi|419810578|ref|ZP_14335458.1| RNA-binding protein YhbY [Escherichia coli O32:H37 str. P4]
gi|419866806|ref|ZP_14389155.1| RNA-binding protein YhbY [Escherichia coli O103:H25 str. CVM9340]
gi|419868259|ref|ZP_14390551.1| RNA-binding protein YhbY [Escherichia coli O103:H2 str. CVM9450]
gi|419877679|ref|ZP_14399227.1| RNA-binding protein YhbY [Escherichia coli O111:H11 str. CVM9534]
gi|419883537|ref|ZP_14404636.1| RNA-binding protein YhbY [Escherichia coli O111:H11 str. CVM9545]
gi|419890835|ref|ZP_14411032.1| RNA-binding protein YhbY [Escherichia coli O111:H8 str. CVM9570]
gi|419898493|ref|ZP_14418042.1| RNA-binding protein YhbY [Escherichia coli O111:H8 str. CVM9574]
gi|419903913|ref|ZP_14422926.1| RNA-binding protein YhbY [Escherichia coli O26:H11 str. CVM9942]
gi|419909638|ref|ZP_14428177.1| hypothetical protein ECO10026_21076 [Escherichia coli O26:H11 str.
CVM10026]
gi|419913513|ref|ZP_14431944.1| RNA-binding protein YhbY [Escherichia coli KD1]
gi|419919632|ref|ZP_14437777.1| RNA-binding protein YhbY [Escherichia coli KD2]
gi|419922600|ref|ZP_14440612.1| RNA-binding protein YhbY [Escherichia coli 541-15]
gi|419927619|ref|ZP_14445353.1| RNA-binding protein YhbY [Escherichia coli 541-1]
gi|419935105|ref|ZP_14452192.1| RNA-binding protein YhbY [Escherichia coli 576-1]
gi|419939330|ref|ZP_14456125.1| RNA-binding protein YhbY [Escherichia coli 75]
gi|419946196|ref|ZP_14462613.1| RNA-binding protein YhbY [Escherichia coli HM605]
gi|419947945|ref|ZP_14464253.1| RNA-binding protein YhbY [Escherichia coli CUMT8]
gi|420087924|ref|ZP_14599850.1| RNA-binding protein YhbY [Escherichia coli O111:H8 str. CVM9602]
gi|420098715|ref|ZP_14609974.1| RNA-binding protein YhbY [Escherichia coli O111:H8 str. CVM9634]
gi|420098941|ref|ZP_14610188.1| RNA-binding protein YhbY [Escherichia coli O111:H11 str. CVM9455]
gi|420105850|ref|ZP_14616283.1| RNA-binding protein YhbY [Escherichia coli O111:H11 str. CVM9553]
gi|420118205|ref|ZP_14627538.1| RNA-binding protein YhbY [Escherichia coli O26:H11 str. CVM10021]
gi|420118606|ref|ZP_14627927.1| RNA-binding protein YhbY [Escherichia coli O26:H11 str. CVM10030]
gi|420130146|ref|ZP_14638650.1| RNA-binding protein YhbY [Escherichia coli O26:H11 str. CVM10224]
gi|420135134|ref|ZP_14643228.1| RNA-binding protein YhbY [Escherichia coli O26:H11 str. CVM9952]
gi|420271553|ref|ZP_14773906.1| RNA-binding protein, YhbY family [Escherichia coli PA22]
gi|420277224|ref|ZP_14779505.1| RNA-binding protein, YhbY family [Escherichia coli PA40]
gi|420282479|ref|ZP_14784712.1| RNA-binding protein, YhbY family [Escherichia coli TW06591]
gi|420288257|ref|ZP_14790441.1| RNA-binding protein, YhbY family [Escherichia coli TW10246]
gi|420294299|ref|ZP_14796413.1| RNA-binding protein, YhbY family [Escherichia coli TW11039]
gi|420300152|ref|ZP_14802197.1| RNA-binding protein, YhbY family [Escherichia coli TW09109]
gi|420306082|ref|ZP_14808071.1| RNA-binding protein, YhbY family [Escherichia coli TW10119]
gi|420311527|ref|ZP_14813456.1| RNA-binding protein, YhbY family [Escherichia coli EC1738]
gi|420316807|ref|ZP_14818680.1| RNA-binding protein, YhbY family [Escherichia coli EC1734]
gi|420322148|ref|ZP_14823972.1| RNA-binding protein YhbY [Shigella flexneri 2850-71]
gi|420327339|ref|ZP_14829084.1| RNA-binding protein YhbY [Shigella flexneri CCH060]
gi|420337489|ref|ZP_14839051.1| RNA-binding protein YhbY [Shigella flexneri K-315]
gi|420343582|ref|ZP_14845047.1| RNA-binding protein YhbY [Shigella flexneri K-404]
gi|420349134|ref|ZP_14850515.1| RNA-binding protein YhbY [Shigella boydii 965-58]
gi|420354701|ref|ZP_14855782.1| RNA-binding protein YhbY [Shigella boydii 4444-74]
gi|420360536|ref|ZP_14861491.1| RNA-binding protein YhbY [Shigella sonnei 3226-85]
gi|420365042|ref|ZP_14865911.1| CRS1 / YhbY domain protein [Shigella sonnei 4822-66]
gi|420382273|ref|ZP_14881710.1| RNA-binding protein YhbY [Shigella dysenteriae 225-75]
gi|420387433|ref|ZP_14886774.1| RNA-binding protein YhbY [Escherichia coli EPECa12]
gi|420393298|ref|ZP_14892544.1| CRS1 / YhbY domain protein [Escherichia coli EPEC C342-62]
gi|421684343|ref|ZP_16124130.1| CRS1 / YhbY domain protein [Shigella flexneri 1485-80]
gi|421774852|ref|ZP_16211463.1| RNA-binding protein YhbY [Escherichia coli AD30]
gi|421814217|ref|ZP_16249924.1| RNA-binding protein, YhbY family [Escherichia coli 8.0416]
gi|421820012|ref|ZP_16255499.1| RNA-binding protein YhbY [Escherichia coli 10.0821]
gi|421826024|ref|ZP_16261378.1| RNA-binding protein, YhbY family [Escherichia coli FRIK920]
gi|421832741|ref|ZP_16268023.1| RNA-binding protein, YhbY family [Escherichia coli PA7]
gi|422332656|ref|ZP_16413669.1| RNA-binding protein YhbY [Escherichia coli 4_1_47FAA]
gi|422353689|ref|ZP_16434438.1| hypothetical protein HMPREF9542_03009 [Escherichia coli MS 117-3]
gi|422357234|ref|ZP_16437901.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
110-3]
gi|422362356|ref|ZP_16442927.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
153-1]
gi|422370357|ref|ZP_16450750.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS 16-3]
gi|422376569|ref|ZP_16456818.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS 60-1]
gi|422380019|ref|ZP_16460200.1| hypothetical protein HMPREF9532_01542 [Escherichia coli MS 57-2]
gi|422749718|ref|ZP_16803629.1| CRS1/YhbY domain-containing protein [Escherichia coli H252]
gi|422753878|ref|ZP_16807704.1| CRS1/YhbY domain-containing protein [Escherichia coli H263]
gi|422760649|ref|ZP_16814409.1| CRS1/YhbY domain-containing protein [Escherichia coli E1167]
gi|422767325|ref|ZP_16821051.1| CRS1/YhbY domain-containing protein [Escherichia coli E1520]
gi|422770943|ref|ZP_16824633.1| CRS1/YhbY domain-containing protein [Escherichia coli E482]
gi|422775566|ref|ZP_16829221.1| CRS1/YhbY domain-containing protein [Escherichia coli H120]
gi|422779859|ref|ZP_16832644.1| CRS1/YhbY domain-containing protein [Escherichia coli TW10509]
gi|422787286|ref|ZP_16840024.1| CRS1/YhbY domain-containing protein [Escherichia coli H489]
gi|422793193|ref|ZP_16845890.1| CRS1/YhbY domain-containing protein [Escherichia coli TA007]
gi|422801126|ref|ZP_16849623.1| CRS1/YhbY domain-containing protein [Escherichia coli M863]
gi|422803956|ref|ZP_16852388.1| CRS1/YhbY domain-containing protein [Escherichia fergusonii B253]
gi|422818347|ref|ZP_16866560.1| RNA-binding protein YhbY [Escherichia coli M919]
gi|422827416|ref|ZP_16875590.1| hypothetical protein ESNG_00095 [Escherichia coli B093]
gi|422833470|ref|ZP_16881536.1| RNA-binding protein yhbY [Escherichia coli E101]
gi|422841196|ref|ZP_16889166.1| RNA-binding protein yhbY [Escherichia coli H397]
gi|422959953|ref|ZP_16971588.1| RNA-binding protein YhbY [Escherichia coli H494]
gi|422969657|ref|ZP_16973450.1| RNA-binding protein YhbY [Escherichia coli TA124]
gi|422989383|ref|ZP_16980155.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. C227-11]
gi|422996278|ref|ZP_16987041.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. C236-11]
gi|423001427|ref|ZP_16992180.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 09-7901]
gi|423005087|ref|ZP_16995832.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 04-8351]
gi|423011592|ref|ZP_17002325.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-3677]
gi|423020820|ref|ZP_17011527.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4404]
gi|423025985|ref|ZP_17016680.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4522]
gi|423031804|ref|ZP_17022490.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4623]
gi|423034676|ref|ZP_17025354.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423039804|ref|ZP_17030473.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423046488|ref|ZP_17037147.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423055025|ref|ZP_17043831.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423057017|ref|ZP_17045816.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423702682|ref|ZP_17677114.1| RNA-binding protein YhbY [Escherichia coli H730]
gi|423707480|ref|ZP_17681860.1| RNA-binding protein YhbY [Escherichia coli B799]
gi|423727137|ref|ZP_17701051.1| RNA-binding protein, YhbY family [Escherichia coli PA31]
gi|424079343|ref|ZP_17816311.1| RNA-binding protein, YhbY family [Escherichia coli FDA505]
gi|424085800|ref|ZP_17822287.1| RNA-binding protein, YhbY family [Escherichia coli FDA517]
gi|424092200|ref|ZP_17828130.1| RNA-binding protein, YhbY family [Escherichia coli FRIK1996]
gi|424098871|ref|ZP_17834147.1| RNA-binding protein, YhbY family [Escherichia coli FRIK1985]
gi|424105085|ref|ZP_17839828.1| RNA-binding protein, YhbY family [Escherichia coli FRIK1990]
gi|424111731|ref|ZP_17845961.1| RNA-binding protein, YhbY family [Escherichia coli 93-001]
gi|424117668|ref|ZP_17851502.1| RNA-binding protein, YhbY family [Escherichia coli PA3]
gi|424123857|ref|ZP_17857164.1| RNA-binding protein, YhbY family [Escherichia coli PA5]
gi|424130008|ref|ZP_17862911.1| RNA-binding protein, YhbY family [Escherichia coli PA9]
gi|424136332|ref|ZP_17868780.1| RNA-binding protein, YhbY family [Escherichia coli PA10]
gi|424142884|ref|ZP_17874751.1| RNA-binding protein, YhbY family [Escherichia coli PA14]
gi|424149285|ref|ZP_17880656.1| RNA-binding protein, YhbY family [Escherichia coli PA15]
gi|424155135|ref|ZP_17886067.1| RNA-binding protein, YhbY family [Escherichia coli PA24]
gi|424253733|ref|ZP_17891613.1| RNA-binding protein, YhbY family [Escherichia coli PA25]
gi|424332521|ref|ZP_17897518.1| RNA-binding protein, YhbY family [Escherichia coli PA28]
gi|424451570|ref|ZP_17903240.1| RNA-binding protein, YhbY family [Escherichia coli PA32]
gi|424457760|ref|ZP_17908870.1| RNA-binding protein, YhbY family [Escherichia coli PA33]
gi|424464216|ref|ZP_17914593.1| RNA-binding protein, YhbY family [Escherichia coli PA39]
gi|424470522|ref|ZP_17920334.1| RNA-binding protein, YhbY family [Escherichia coli PA41]
gi|424477030|ref|ZP_17926343.1| RNA-binding protein, YhbY family [Escherichia coli PA42]
gi|424482786|ref|ZP_17931762.1| RNA-binding protein, YhbY family [Escherichia coli TW07945]
gi|424488968|ref|ZP_17937514.1| RNA-binding protein, YhbY family [Escherichia coli TW09098]
gi|424495621|ref|ZP_17943243.1| RNA-binding protein, YhbY family [Escherichia coli TW09195]
gi|424502320|ref|ZP_17949207.1| RNA-binding protein, YhbY family [Escherichia coli EC4203]
gi|424508573|ref|ZP_17954957.1| RNA-binding protein, YhbY family [Escherichia coli EC4196]
gi|424515924|ref|ZP_17960559.1| RNA-binding protein, YhbY family [Escherichia coli TW14313]
gi|424522125|ref|ZP_17966237.1| RNA-binding protein, YhbY family [Escherichia coli TW14301]
gi|424528002|ref|ZP_17971714.1| RNA-binding protein, YhbY family [Escherichia coli EC4421]
gi|424534149|ref|ZP_17977493.1| RNA-binding protein, YhbY family [Escherichia coli EC4422]
gi|424540201|ref|ZP_17983141.1| RNA-binding protein, YhbY family [Escherichia coli EC4013]
gi|424546330|ref|ZP_17988699.1| RNA-binding protein, YhbY family [Escherichia coli EC4402]
gi|424552553|ref|ZP_17994394.1| RNA-binding protein, YhbY family [Escherichia coli EC4439]
gi|424558742|ref|ZP_18000148.1| RNA-binding protein, YhbY family [Escherichia coli EC4436]
gi|424565080|ref|ZP_18006079.1| RNA-binding protein, YhbY family [Escherichia coli EC4437]
gi|424571208|ref|ZP_18011753.1| RNA-binding protein, YhbY family [Escherichia coli EC4448]
gi|424577364|ref|ZP_18017414.1| RNA-binding protein, YhbY family [Escherichia coli EC1845]
gi|424583184|ref|ZP_18022827.1| RNA-binding protein, YhbY family [Escherichia coli EC1863]
gi|424746870|ref|ZP_18175087.1| RNA-binding protein YhbY [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424760985|ref|ZP_18188570.1| RNA-binding protein YhbY [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424767513|ref|ZP_18194830.1| RNA-binding protein YhbY [Escherichia coli O111:H8 str.
CFSAN001632]
gi|424817741|ref|ZP_18242892.1| RNA-binding protein YhbY [Escherichia fergusonii ECD227]
gi|424839431|ref|ZP_18264068.1| RNA-binding protein YhbY [Shigella flexneri 5a str. M90T]
gi|425099857|ref|ZP_18502586.1| RNA-binding protein YhbY [Escherichia coli 3.4870]
gi|425105954|ref|ZP_18508268.1| RNA-binding protein YhbY [Escherichia coli 5.2239]
gi|425111967|ref|ZP_18513884.1| RNA-binding protein, YhbY family [Escherichia coli 6.0172]
gi|425116727|ref|ZP_18518517.1| RNA-binding protein, YhbY family [Escherichia coli 8.0566]
gi|425121479|ref|ZP_18523165.1| RNA-binding protein YhbY [Escherichia coli 8.0569]
gi|425127891|ref|ZP_18529055.1| RNA-binding protein YhbY [Escherichia coli 8.0586]
gi|425133633|ref|ZP_18534479.1| RNA-binding protein YhbY [Escherichia coli 8.2524]
gi|425140209|ref|ZP_18540587.1| RNA-binding protein, YhbY family [Escherichia coli 10.0833]
gi|425145922|ref|ZP_18545913.1| RNA-binding protein YhbY [Escherichia coli 10.0869]
gi|425152038|ref|ZP_18551649.1| RNA-binding protein YhbY [Escherichia coli 88.0221]
gi|425157909|ref|ZP_18557169.1| RNA-binding protein, YhbY family [Escherichia coli PA34]
gi|425164261|ref|ZP_18563144.1| RNA-binding protein, YhbY family [Escherichia coli FDA506]
gi|425170004|ref|ZP_18568473.1| RNA-binding protein, YhbY family [Escherichia coli FDA507]
gi|425176064|ref|ZP_18574180.1| RNA-binding protein, YhbY family [Escherichia coli FDA504]
gi|425182106|ref|ZP_18579797.1| RNA-binding protein, YhbY family [Escherichia coli FRIK1999]
gi|425188373|ref|ZP_18585642.1| RNA-binding protein, YhbY family [Escherichia coli FRIK1997]
gi|425195140|ref|ZP_18591906.1| RNA-binding protein, YhbY family [Escherichia coli NE1487]
gi|425201614|ref|ZP_18597818.1| RNA-binding protein, YhbY family [Escherichia coli NE037]
gi|425207999|ref|ZP_18603792.1| RNA-binding protein, YhbY family [Escherichia coli FRIK2001]
gi|425213754|ref|ZP_18609150.1| RNA-binding protein, YhbY family [Escherichia coli PA4]
gi|425219876|ref|ZP_18614835.1| RNA-binding protein, YhbY family [Escherichia coli PA23]
gi|425226426|ref|ZP_18620889.1| RNA-binding protein, YhbY family [Escherichia coli PA49]
gi|425232683|ref|ZP_18626719.1| RNA-binding protein, YhbY family [Escherichia coli PA45]
gi|425238606|ref|ZP_18632322.1| RNA-binding protein, YhbY family [Escherichia coli TT12B]
gi|425244842|ref|ZP_18638144.1| RNA-binding protein, YhbY family [Escherichia coli MA6]
gi|425251033|ref|ZP_18643972.1| RNA-binding protein, YhbY family [Escherichia coli 5905]
gi|425256820|ref|ZP_18649328.1| RNA-binding protein, YhbY family [Escherichia coli CB7326]
gi|425263072|ref|ZP_18655071.1| RNA-binding protein, YhbY family [Escherichia coli EC96038]
gi|425269068|ref|ZP_18660695.1| RNA-binding protein, YhbY family [Escherichia coli 5412]
gi|425274374|ref|ZP_18665772.1| RNA-binding protein, YhbY family [Escherichia coli TW15901]
gi|425279579|ref|ZP_18670807.1| RNA-binding protein, YhbY family [Escherichia coli ARS4.2123]
gi|425284955|ref|ZP_18675985.1| RNA-binding protein, YhbY family [Escherichia coli TW00353]
gi|425290320|ref|ZP_18681146.1| RNA-binding protein, YhbY family [Escherichia coli 3006]
gi|425296524|ref|ZP_18686688.1| RNA-binding protein, YhbY family [Escherichia coli PA38]
gi|425302049|ref|ZP_18691933.1| RNA-binding protein, YhbY family [Escherichia coli 07798]
gi|425306971|ref|ZP_18696651.1| RNA-binding protein, YhbY family [Escherichia coli N1]
gi|425313212|ref|ZP_18702387.1| RNA-binding protein, YhbY family [Escherichia coli EC1735]
gi|425319195|ref|ZP_18707979.1| RNA-binding protein, YhbY family [Escherichia coli EC1736]
gi|425325288|ref|ZP_18713641.1| RNA-binding protein, YhbY family [Escherichia coli EC1737]
gi|425331655|ref|ZP_18719489.1| RNA-binding protein, YhbY family [Escherichia coli EC1846]
gi|425337836|ref|ZP_18725189.1| RNA-binding protein, YhbY family [Escherichia coli EC1847]
gi|425344144|ref|ZP_18731031.1| RNA-binding protein, YhbY family [Escherichia coli EC1848]
gi|425349951|ref|ZP_18736415.1| RNA-binding protein, YhbY family [Escherichia coli EC1849]
gi|425356253|ref|ZP_18742317.1| RNA-binding protein, YhbY family [Escherichia coli EC1850]
gi|425362215|ref|ZP_18747859.1| RNA-binding protein, YhbY family [Escherichia coli EC1856]
gi|425368432|ref|ZP_18753552.1| RNA-binding protein, YhbY family [Escherichia coli EC1862]
gi|425374750|ref|ZP_18759388.1| RNA-binding protein, YhbY family [Escherichia coli EC1864]
gi|425381456|ref|ZP_18765455.1| RNA-binding protein, YhbY family [Escherichia coli EC1865]
gi|425387638|ref|ZP_18771193.1| RNA-binding protein, YhbY family [Escherichia coli EC1866]
gi|425394289|ref|ZP_18777394.1| RNA-binding protein, YhbY family [Escherichia coli EC1868]
gi|425400431|ref|ZP_18783132.1| RNA-binding protein, YhbY family [Escherichia coli EC1869]
gi|425406518|ref|ZP_18788736.1| RNA-binding protein, YhbY family [Escherichia coli EC1870]
gi|425412903|ref|ZP_18794662.1| RNA-binding protein, YhbY family [Escherichia coli NE098]
gi|425419218|ref|ZP_18800483.1| RNA-binding protein, YhbY family [Escherichia coli FRIK523]
gi|425424054|ref|ZP_18805212.1| RNA-binding protein, YhbY family [Escherichia coli 0.1288]
gi|425430491|ref|ZP_18811096.1| RNA-binding protein, YhbY family [Escherichia coli 0.1304]
gi|427806382|ref|ZP_18973449.1| hypothetical protein BN16_38171 [Escherichia coli chi7122]
gi|427810973|ref|ZP_18978038.1| hypothetical protein BN17_31231 [Escherichia coli]
gi|428948924|ref|ZP_19021196.1| RNA-binding protein YhbY [Escherichia coli 88.1467]
gi|428954997|ref|ZP_19026789.1| RNA-binding protein YhbY [Escherichia coli 88.1042]
gi|428960987|ref|ZP_19032277.1| RNA-binding protein YhbY [Escherichia coli 89.0511]
gi|428967603|ref|ZP_19038311.1| RNA-binding protein YhbY [Escherichia coli 90.0091]
gi|428973359|ref|ZP_19043681.1| RNA-binding protein YhbY [Escherichia coli 90.0039]
gi|428979799|ref|ZP_19049615.1| RNA-binding protein YhbY [Escherichia coli 90.2281]
gi|428985649|ref|ZP_19055038.1| RNA-binding protein YhbY [Escherichia coli 93.0055]
gi|428991717|ref|ZP_19060701.1| RNA-binding protein YhbY [Escherichia coli 93.0056]
gi|428997605|ref|ZP_19066195.1| RNA-binding protein YhbY [Escherichia coli 94.0618]
gi|429003874|ref|ZP_19071971.1| RNA-binding protein YhbY [Escherichia coli 95.0183]
gi|429009973|ref|ZP_19077427.1| RNA-binding protein YhbY [Escherichia coli 95.1288]
gi|429016495|ref|ZP_19083373.1| RNA-binding protein YhbY [Escherichia coli 95.0943]
gi|429022336|ref|ZP_19088852.1| RNA-binding protein YhbY [Escherichia coli 96.0428]
gi|429028395|ref|ZP_19094384.1| RNA-binding protein YhbY [Escherichia coli 96.0427]
gi|429034568|ref|ZP_19100086.1| RNA-binding protein YhbY [Escherichia coli 96.0939]
gi|429040654|ref|ZP_19105750.1| RNA-binding protein YhbY [Escherichia coli 96.0932]
gi|429046573|ref|ZP_19111281.1| RNA-binding protein YhbY [Escherichia coli 96.0107]
gi|429051925|ref|ZP_19116487.1| RNA-binding protein YhbY [Escherichia coli 97.0003]
gi|429057377|ref|ZP_19121662.1| RNA-binding protein YhbY [Escherichia coli 97.1742]
gi|429062876|ref|ZP_19126864.1| RNA-binding protein YhbY [Escherichia coli 97.0007]
gi|429069109|ref|ZP_19132561.1| RNA-binding protein YhbY [Escherichia coli 99.0672]
gi|429075050|ref|ZP_19138298.1| RNA-binding protein, YhbY family [Escherichia coli 99.0678]
gi|429080249|ref|ZP_19143381.1| RNA-binding protein YhbY [Escherichia coli 99.0713]
gi|429720848|ref|ZP_19255770.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-9450]
gi|429772746|ref|ZP_19304764.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-02030]
gi|429778112|ref|ZP_19310080.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-02033-1]
gi|429786418|ref|ZP_19318311.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-02092]
gi|429787362|ref|ZP_19319252.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-02093]
gi|429793158|ref|ZP_19325004.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-02281]
gi|429799737|ref|ZP_19331531.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-02318]
gi|429803353|ref|ZP_19335111.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-02913]
gi|429807994|ref|ZP_19339714.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-03439]
gi|429813693|ref|ZP_19345370.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-04080]
gi|429818904|ref|ZP_19350536.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-03943]
gi|429828292|ref|ZP_19359311.1| RNA-binding protein YhbY [Escherichia coli 96.0109]
gi|429834727|ref|ZP_19365028.1| RNA-binding protein YhbY [Escherichia coli 97.0010]
gi|429905252|ref|ZP_19371229.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-9990]
gi|429909388|ref|ZP_19375351.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-9941]
gi|429915260|ref|ZP_19381206.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-4984]
gi|429920306|ref|ZP_19386234.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-5604]
gi|429926110|ref|ZP_19392022.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-4986]
gi|429930045|ref|ZP_19395946.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-4987]
gi|429936584|ref|ZP_19402469.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-4988]
gi|429942265|ref|ZP_19408138.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-5603]
gi|429944948|ref|ZP_19410809.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-6006]
gi|429952504|ref|ZP_19418349.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec12-0465]
gi|429955859|ref|ZP_19421689.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec12-0466]
gi|432355186|ref|ZP_19598454.1| RNA-binding protein YhbY [Escherichia coli KTE2]
gi|432359634|ref|ZP_19602848.1| RNA-binding protein YhbY [Escherichia coli KTE4]
gi|432364431|ref|ZP_19607588.1| RNA-binding protein YhbY [Escherichia coli KTE5]
gi|432366637|ref|ZP_19609755.1| RNA-binding protein YhbY [Escherichia coli KTE10]
gi|432378368|ref|ZP_19621352.1| RNA-binding protein YhbY [Escherichia coli KTE12]
gi|432382910|ref|ZP_19625849.1| RNA-binding protein YhbY [Escherichia coli KTE15]
gi|432388941|ref|ZP_19631821.1| RNA-binding protein YhbY [Escherichia coli KTE16]
gi|432393771|ref|ZP_19636595.1| RNA-binding protein YhbY [Escherichia coli KTE21]
gi|432399134|ref|ZP_19641909.1| RNA-binding protein YhbY [Escherichia coli KTE25]
gi|432403561|ref|ZP_19646306.1| RNA-binding protein YhbY [Escherichia coli KTE26]
gi|432408259|ref|ZP_19650963.1| RNA-binding protein YhbY [Escherichia coli KTE28]
gi|432413409|ref|ZP_19656064.1| RNA-binding protein YhbY [Escherichia coli KTE39]
gi|432418705|ref|ZP_19661300.1| RNA-binding protein YhbY [Escherichia coli KTE44]
gi|432423594|ref|ZP_19666133.1| RNA-binding protein YhbY [Escherichia coli KTE178]
gi|432427822|ref|ZP_19670306.1| RNA-binding protein YhbY [Escherichia coli KTE181]
gi|432433400|ref|ZP_19675825.1| RNA-binding protein YhbY [Escherichia coli KTE187]
gi|432437995|ref|ZP_19680379.1| RNA-binding protein YhbY [Escherichia coli KTE188]
gi|432442671|ref|ZP_19685007.1| RNA-binding protein YhbY [Escherichia coli KTE189]
gi|432451425|ref|ZP_19693682.1| RNA-binding protein YhbY [Escherichia coli KTE193]
gi|432458308|ref|ZP_19700485.1| RNA-binding protein YhbY [Escherichia coli KTE201]
gi|432462525|ref|ZP_19704659.1| RNA-binding protein YhbY [Escherichia coli KTE204]
gi|432467499|ref|ZP_19709578.1| RNA-binding protein YhbY [Escherichia coli KTE205]
gi|432472533|ref|ZP_19714571.1| RNA-binding protein YhbY [Escherichia coli KTE206]
gi|432477518|ref|ZP_19719508.1| RNA-binding protein YhbY [Escherichia coli KTE208]
gi|432482514|ref|ZP_19724465.1| RNA-binding protein YhbY [Escherichia coli KTE210]
gi|432486948|ref|ZP_19728858.1| RNA-binding protein YhbY [Escherichia coli KTE212]
gi|432490965|ref|ZP_19732829.1| RNA-binding protein YhbY [Escherichia coli KTE213]
gi|432497301|ref|ZP_19739094.1| RNA-binding protein YhbY [Escherichia coli KTE214]
gi|432501743|ref|ZP_19743495.1| RNA-binding protein YhbY [Escherichia coli KTE216]
gi|432506058|ref|ZP_19747778.1| RNA-binding protein YhbY [Escherichia coli KTE220]
gi|432515577|ref|ZP_19752793.1| RNA-binding protein YhbY [Escherichia coli KTE224]
gi|432519380|ref|ZP_19756560.1| RNA-binding protein YhbY [Escherichia coli KTE228]
gi|432525513|ref|ZP_19762632.1| RNA-binding protein YhbY [Escherichia coli KTE230]
gi|432528022|ref|ZP_19765099.1| RNA-binding protein YhbY [Escherichia coli KTE233]
gi|432535527|ref|ZP_19772491.1| RNA-binding protein YhbY [Escherichia coli KTE234]
gi|432539538|ref|ZP_19776432.1| RNA-binding protein YhbY [Escherichia coli KTE235]
gi|432544924|ref|ZP_19781759.1| RNA-binding protein YhbY [Escherichia coli KTE236]
gi|432550406|ref|ZP_19787166.1| RNA-binding protein YhbY [Escherichia coli KTE237]
gi|432555250|ref|ZP_19791969.1| RNA-binding protein YhbY [Escherichia coli KTE47]
gi|432560456|ref|ZP_19797112.1| RNA-binding protein YhbY [Escherichia coli KTE49]
gi|432565545|ref|ZP_19802109.1| RNA-binding protein YhbY [Escherichia coli KTE51]
gi|432570410|ref|ZP_19806917.1| RNA-binding protein YhbY [Escherichia coli KTE53]
gi|432575381|ref|ZP_19811855.1| RNA-binding protein YhbY [Escherichia coli KTE55]
gi|432577415|ref|ZP_19813865.1| RNA-binding protein YhbY [Escherichia coli KTE56]
gi|432581621|ref|ZP_19818035.1| RNA-binding protein YhbY [Escherichia coli KTE57]
gi|432589565|ref|ZP_19825918.1| RNA-binding protein YhbY [Escherichia coli KTE58]
gi|432594381|ref|ZP_19830694.1| RNA-binding protein YhbY [Escherichia coli KTE60]
gi|432599433|ref|ZP_19835704.1| RNA-binding protein YhbY [Escherichia coli KTE62]
gi|432604019|ref|ZP_19840250.1| RNA-binding protein YhbY [Escherichia coli KTE66]
gi|432609221|ref|ZP_19845403.1| RNA-binding protein YhbY [Escherichia coli KTE67]
gi|432613191|ref|ZP_19849349.1| RNA-binding protein YhbY [Escherichia coli KTE72]
gi|432618429|ref|ZP_19854534.1| RNA-binding protein YhbY [Escherichia coli KTE75]
gi|432623547|ref|ZP_19859566.1| RNA-binding protein YhbY [Escherichia coli KTE76]
gi|432628815|ref|ZP_19864785.1| RNA-binding protein YhbY [Escherichia coli KTE77]
gi|432633058|ref|ZP_19868979.1| RNA-binding protein YhbY [Escherichia coli KTE80]
gi|432638389|ref|ZP_19874255.1| RNA-binding protein YhbY [Escherichia coli KTE81]
gi|432642748|ref|ZP_19878574.1| RNA-binding protein YhbY [Escherichia coli KTE83]
gi|432647859|ref|ZP_19883645.1| RNA-binding protein YhbY [Escherichia coli KTE86]
gi|432652779|ref|ZP_19888525.1| RNA-binding protein YhbY [Escherichia coli KTE87]
gi|432657422|ref|ZP_19893119.1| RNA-binding protein YhbY [Escherichia coli KTE93]
gi|432662392|ref|ZP_19898028.1| RNA-binding protein YhbY [Escherichia coli KTE111]
gi|432667745|ref|ZP_19903318.1| RNA-binding protein YhbY [Escherichia coli KTE116]
gi|432672277|ref|ZP_19907801.1| RNA-binding protein YhbY [Escherichia coli KTE119]
gi|432676309|ref|ZP_19911758.1| RNA-binding protein YhbY [Escherichia coli KTE142]
gi|432681908|ref|ZP_19917267.1| RNA-binding protein YhbY [Escherichia coli KTE143]
gi|432687001|ref|ZP_19922292.1| RNA-binding protein YhbY [Escherichia coli KTE156]
gi|432688456|ref|ZP_19923728.1| RNA-binding protein YhbY [Escherichia coli KTE161]
gi|432696053|ref|ZP_19931246.1| RNA-binding protein YhbY [Escherichia coli KTE162]
gi|432700703|ref|ZP_19935848.1| RNA-binding protein YhbY [Escherichia coli KTE169]
gi|432705921|ref|ZP_19941017.1| RNA-binding protein YhbY [Escherichia coli KTE171]
gi|432707530|ref|ZP_19942607.1| RNA-binding protein YhbY [Escherichia coli KTE6]
gi|432715033|ref|ZP_19950061.1| RNA-binding protein YhbY [Escherichia coli KTE8]
gi|432720315|ref|ZP_19955280.1| RNA-binding protein YhbY [Escherichia coli KTE9]
gi|432724652|ref|ZP_19959566.1| RNA-binding protein YhbY [Escherichia coli KTE17]
gi|432729235|ref|ZP_19964110.1| RNA-binding protein YhbY [Escherichia coli KTE18]
gi|432738666|ref|ZP_19973418.1| RNA-binding protein YhbY [Escherichia coli KTE42]
gi|432742922|ref|ZP_19977637.1| RNA-binding protein YhbY [Escherichia coli KTE23]
gi|432747165|ref|ZP_19981827.1| RNA-binding protein YhbY [Escherichia coli KTE43]
gi|432751655|ref|ZP_19986238.1| RNA-binding protein YhbY [Escherichia coli KTE29]
gi|432756115|ref|ZP_19990660.1| RNA-binding protein YhbY [Escherichia coli KTE22]
gi|432766585|ref|ZP_20001001.1| RNA-binding protein YhbY [Escherichia coli KTE48]
gi|432767553|ref|ZP_20001947.1| RNA-binding protein YhbY [Escherichia coli KTE50]
gi|432776263|ref|ZP_20010526.1| RNA-binding protein YhbY [Escherichia coli KTE54]
gi|432780195|ref|ZP_20014416.1| RNA-binding protein YhbY [Escherichia coli KTE59]
gi|432785153|ref|ZP_20019331.1| RNA-binding protein YhbY [Escherichia coli KTE63]
gi|432789188|ref|ZP_20023316.1| RNA-binding protein YhbY [Escherichia coli KTE65]
gi|432794405|ref|ZP_20028487.1| RNA-binding protein YhbY [Escherichia coli KTE78]
gi|432795922|ref|ZP_20029963.1| RNA-binding protein YhbY [Escherichia coli KTE79]
gi|432803364|ref|ZP_20037318.1| RNA-binding protein YhbY [Escherichia coli KTE84]
gi|432807442|ref|ZP_20041357.1| RNA-binding protein YhbY [Escherichia coli KTE91]
gi|432810912|ref|ZP_20044771.1| RNA-binding protein YhbY [Escherichia coli KTE101]
gi|432816954|ref|ZP_20050715.1| RNA-binding protein YhbY [Escherichia coli KTE115]
gi|432822623|ref|ZP_20056312.1| RNA-binding protein YhbY [Escherichia coli KTE118]
gi|432824078|ref|ZP_20057748.1| RNA-binding protein YhbY [Escherichia coli KTE123]
gi|432828817|ref|ZP_20062435.1| RNA-binding protein YhbY [Escherichia coli KTE135]
gi|432836142|ref|ZP_20069675.1| RNA-binding protein YhbY [Escherichia coli KTE136]
gi|432840991|ref|ZP_20074451.1| RNA-binding protein YhbY [Escherichia coli KTE140]
gi|432846229|ref|ZP_20078910.1| RNA-binding protein YhbY [Escherichia coli KTE141]
gi|432854324|ref|ZP_20082869.1| RNA-binding protein YhbY [Escherichia coli KTE144]
gi|432865092|ref|ZP_20088340.1| RNA-binding protein YhbY [Escherichia coli KTE146]
gi|432870643|ref|ZP_20091100.1| RNA-binding protein YhbY [Escherichia coli KTE147]
gi|432877174|ref|ZP_20094972.1| RNA-binding protein YhbY [Escherichia coli KTE154]
gi|432888486|ref|ZP_20102238.1| RNA-binding protein YhbY [Escherichia coli KTE158]
gi|432890557|ref|ZP_20103489.1| RNA-binding protein YhbY [Escherichia coli KTE165]
gi|432900410|ref|ZP_20110832.1| RNA-binding protein YhbY [Escherichia coli KTE192]
gi|432906829|ref|ZP_20115368.1| RNA-binding protein YhbY [Escherichia coli KTE194]
gi|432914675|ref|ZP_20120091.1| RNA-binding protein YhbY [Escherichia coli KTE190]
gi|432922201|ref|ZP_20125165.1| RNA-binding protein YhbY [Escherichia coli KTE173]
gi|432929000|ref|ZP_20130101.1| RNA-binding protein YhbY [Escherichia coli KTE175]
gi|432936368|ref|ZP_20135502.1| RNA-binding protein YhbY [Escherichia coli KTE184]
gi|432939808|ref|ZP_20137911.1| RNA-binding protein YhbY [Escherichia coli KTE183]
gi|432949246|ref|ZP_20144169.1| RNA-binding protein YhbY [Escherichia coli KTE196]
gi|432956939|ref|ZP_20148542.1| RNA-binding protein YhbY [Escherichia coli KTE197]
gi|432963639|ref|ZP_20153058.1| RNA-binding protein YhbY [Escherichia coli KTE202]
gi|432969248|ref|ZP_20158160.1| RNA-binding protein YhbY [Escherichia coli KTE203]
gi|432973460|ref|ZP_20162306.1| RNA-binding protein YhbY [Escherichia coli KTE207]
gi|432975388|ref|ZP_20164223.1| RNA-binding protein YhbY [Escherichia coli KTE209]
gi|432982632|ref|ZP_20171403.1| RNA-binding protein YhbY [Escherichia coli KTE211]
gi|432987034|ref|ZP_20175747.1| RNA-binding protein YhbY [Escherichia coli KTE215]
gi|432996948|ref|ZP_20185531.1| RNA-binding protein YhbY [Escherichia coli KTE218]
gi|433001544|ref|ZP_20190063.1| RNA-binding protein YhbY [Escherichia coli KTE223]
gi|433006767|ref|ZP_20195191.1| RNA-binding protein YhbY [Escherichia coli KTE227]
gi|433009382|ref|ZP_20197795.1| RNA-binding protein YhbY [Escherichia coli KTE229]
gi|433015486|ref|ZP_20203821.1| RNA-binding protein YhbY [Escherichia coli KTE104]
gi|433020313|ref|ZP_20208479.1| RNA-binding protein YhbY [Escherichia coli KTE105]
gi|433030097|ref|ZP_20217949.1| RNA-binding protein YhbY [Escherichia coli KTE109]
gi|433035072|ref|ZP_20222771.1| RNA-binding protein YhbY [Escherichia coli KTE112]
gi|433040184|ref|ZP_20227777.1| RNA-binding protein YhbY [Escherichia coli KTE113]
gi|433044724|ref|ZP_20232211.1| RNA-binding protein YhbY [Escherichia coli KTE117]
gi|433049616|ref|ZP_20236954.1| RNA-binding protein YhbY [Escherichia coli KTE120]
gi|433054816|ref|ZP_20241983.1| RNA-binding protein YhbY [Escherichia coli KTE122]
gi|433059668|ref|ZP_20246705.1| RNA-binding protein YhbY [Escherichia coli KTE124]
gi|433064635|ref|ZP_20251546.1| RNA-binding protein YhbY [Escherichia coli KTE125]
gi|433069501|ref|ZP_20256276.1| RNA-binding protein YhbY [Escherichia coli KTE128]
gi|433074438|ref|ZP_20261080.1| RNA-binding protein YhbY [Escherichia coli KTE129]
gi|433079372|ref|ZP_20265892.1| RNA-binding protein YhbY [Escherichia coli KTE131]
gi|433084112|ref|ZP_20270560.1| RNA-binding protein YhbY [Escherichia coli KTE133]
gi|433088837|ref|ZP_20275203.1| RNA-binding protein YhbY [Escherichia coli KTE137]
gi|433093568|ref|ZP_20279825.1| RNA-binding protein YhbY [Escherichia coli KTE138]
gi|433097988|ref|ZP_20284164.1| RNA-binding protein YhbY [Escherichia coli KTE139]
gi|433102772|ref|ZP_20288845.1| RNA-binding protein YhbY [Escherichia coli KTE145]
gi|433107436|ref|ZP_20293401.1| RNA-binding protein YhbY [Escherichia coli KTE148]
gi|433117063|ref|ZP_20302849.1| RNA-binding protein YhbY [Escherichia coli KTE153]
gi|433121750|ref|ZP_20307411.1| RNA-binding protein YhbY [Escherichia coli KTE157]
gi|433126751|ref|ZP_20312298.1| RNA-binding protein YhbY [Escherichia coli KTE160]
gi|433131741|ref|ZP_20317171.1| RNA-binding protein YhbY [Escherichia coli KTE163]
gi|433136425|ref|ZP_20321760.1| RNA-binding protein YhbY [Escherichia coli KTE166]
gi|433140815|ref|ZP_20326061.1| RNA-binding protein YhbY [Escherichia coli KTE167]
gi|433145790|ref|ZP_20330924.1| RNA-binding protein YhbY [Escherichia coli KTE168]
gi|433150820|ref|ZP_20335821.1| RNA-binding protein YhbY [Escherichia coli KTE174]
gi|433155332|ref|ZP_20340265.1| RNA-binding protein YhbY [Escherichia coli KTE176]
gi|433160293|ref|ZP_20345120.1| RNA-binding protein YhbY [Escherichia coli KTE177]
gi|433165173|ref|ZP_20349904.1| RNA-binding protein YhbY [Escherichia coli KTE179]
gi|433170149|ref|ZP_20354772.1| RNA-binding protein YhbY [Escherichia coli KTE180]
gi|433175072|ref|ZP_20359586.1| RNA-binding protein YhbY [Escherichia coli KTE232]
gi|433180013|ref|ZP_20364399.1| RNA-binding protein YhbY [Escherichia coli KTE82]
gi|433184901|ref|ZP_20369139.1| RNA-binding protein YhbY [Escherichia coli KTE85]
gi|433189991|ref|ZP_20374080.1| RNA-binding protein YhbY [Escherichia coli KTE88]
gi|433195226|ref|ZP_20379205.1| RNA-binding protein YhbY [Escherichia coli KTE90]
gi|433199930|ref|ZP_20383818.1| RNA-binding protein YhbY [Escherichia coli KTE94]
gi|433204907|ref|ZP_20388659.1| RNA-binding protein YhbY [Escherichia coli KTE95]
gi|433209310|ref|ZP_20392978.1| RNA-binding protein YhbY [Escherichia coli KTE97]
gi|433214160|ref|ZP_20397743.1| RNA-binding protein YhbY [Escherichia coli KTE99]
gi|433325714|ref|ZP_20402773.1| RNA-binding protein YhbY [Escherichia coli J96]
gi|442593011|ref|ZP_21010967.1| FIG004454: RNA binding protein [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442597247|ref|ZP_21015043.1| FIG004454: RNA binding protein [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|442605384|ref|ZP_21020216.1| FIG004454: RNA binding protein [Escherichia coli Nissle 1917]
gi|443619253|ref|YP_007383109.1| RNA-binding protein YhbY [Escherichia coli APEC O78]
gi|444926806|ref|ZP_21246081.1| RNA-binding protein YhbY [Escherichia coli 09BKT078844]
gi|444932493|ref|ZP_21251514.1| RNA-binding protein YhbY [Escherichia coli 99.0814]
gi|444937919|ref|ZP_21256676.1| RNA-binding protein YhbY [Escherichia coli 99.0815]
gi|444943512|ref|ZP_21262013.1| RNA-binding protein YhbY [Escherichia coli 99.0816]
gi|444948968|ref|ZP_21267271.1| RNA-binding protein YhbY [Escherichia coli 99.0839]
gi|444954619|ref|ZP_21272697.1| RNA-binding protein YhbY [Escherichia coli 99.0848]
gi|444960089|ref|ZP_21277924.1| RNA-binding protein YhbY [Escherichia coli 99.1753]
gi|444965260|ref|ZP_21282839.1| RNA-binding protein YhbY [Escherichia coli 99.1775]
gi|444971273|ref|ZP_21288622.1| RNA-binding protein YhbY [Escherichia coli 99.1793]
gi|444976518|ref|ZP_21293621.1| RNA-binding protein YhbY [Escherichia coli 99.1805]
gi|444981958|ref|ZP_21298861.1| RNA-binding protein YhbY [Escherichia coli ATCC 700728]
gi|444987317|ref|ZP_21304091.1| RNA-binding protein YhbY [Escherichia coli PA11]
gi|444992625|ref|ZP_21309265.1| RNA-binding protein YhbY [Escherichia coli PA19]
gi|444997912|ref|ZP_21314407.1| RNA-binding protein YhbY [Escherichia coli PA13]
gi|445003508|ref|ZP_21319893.1| RNA-binding protein YhbY [Escherichia coli PA2]
gi|445008879|ref|ZP_21325116.1| RNA-binding protein YhbY [Escherichia coli PA47]
gi|445014043|ref|ZP_21330145.1| RNA-binding protein YhbY [Escherichia coli PA48]
gi|445019920|ref|ZP_21335882.1| RNA-binding protein YhbY [Escherichia coli PA8]
gi|445025327|ref|ZP_21341146.1| RNA-binding protein YhbY [Escherichia coli 7.1982]
gi|445030752|ref|ZP_21346417.1| RNA-binding protein YhbY [Escherichia coli 99.1781]
gi|445036183|ref|ZP_21351707.1| RNA-binding protein YhbY [Escherichia coli 99.1762]
gi|445041805|ref|ZP_21357173.1| RNA-binding protein YhbY [Escherichia coli PA35]
gi|445047068|ref|ZP_21362313.1| RNA-binding protein YhbY [Escherichia coli 3.4880]
gi|445052585|ref|ZP_21367609.1| RNA-binding protein YhbY [Escherichia coli 95.0083]
gi|445058282|ref|ZP_21373138.1| RNA-binding protein YhbY [Escherichia coli 99.0670]
gi|450193284|ref|ZP_21891941.1| RNA-binding protein YhbY [Escherichia coli SEPT362]
gi|450222746|ref|ZP_21896901.1| RNA-binding protein YhbY [Escherichia coli O08]
gi|450250570|ref|ZP_21901656.1| RNA-binding protein YhbY [Escherichia coli S17]
gi|452968187|ref|ZP_21966414.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. EC4009]
gi|84027995|sp|P0AGK6.1|YHBY_ECO57 RecName: Full=RNA-binding protein YhbY
gi|84027996|sp|P0AGK5.1|YHBY_ECOL6 RecName: Full=RNA-binding protein YhbY
gi|84027997|sp|P0AGK4.1|YHBY_ECOLI RecName: Full=RNA-binding protein YhbY
gi|84027998|sp|P0AGK7.1|YHBY_SHIFL RecName: Full=RNA-binding protein YhbY
gi|12517792|gb|AAG58314.1|AE005546_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26110191|gb|AAN82377.1|AE016767_137 Hypothetical protein yhbY [Escherichia coli CFT073]
gi|606118|gb|AAA57981.1| ORF_o97 [Escherichia coli str. K-12 substr. MG1655]
gi|1789570|gb|AAC76212.1| RNA binding protein associated with pre-50S ribosomal subunits
[Escherichia coli str. K-12 substr. MG1655]
gi|13363532|dbj|BAB37482.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|24053651|gb|AAN44686.1| conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042777|gb|AAP18500.1| hypothetical protein S3438 [Shigella flexneri 2a str. 2457T]
gi|73857194|gb|AAZ89901.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81246993|gb|ABB67701.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|85675974|dbj|BAE77224.1| predicted RNA-binding protein [Escherichia coli str. K12 substr.
W3110]
gi|91074176|gb|ABE09057.1| hypothetical protein UTI89_C3613 [Escherichia coli UTI89]
gi|110345012|gb|ABG71249.1| hypothetical RNA binding protein [Escherichia coli 536]
gi|110616594|gb|ABF05261.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|157068343|gb|ABV07598.1| putative RNA-binding protein [Escherichia coli HS]
gi|157079674|gb|ABV19382.1| putative RNA-binding protein [Escherichia coli E24377A]
gi|169753498|gb|ACA76197.1| protein of unknown function UPF0044 [Escherichia coli ATCC 8739]
gi|169890550|gb|ACB04257.1| predicted RNA-binding protein [Escherichia coli str. K-12 substr.
DH10B]
gi|170519230|gb|ACB17408.1| putative RNA-binding protein [Escherichia coli SMS-3-5]
gi|187429056|gb|ACD08330.1| putative RNA-binding protein [Shigella boydii CDC 3083-94]
gi|187766773|gb|EDU30617.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4196]
gi|188013492|gb|EDU51614.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4113]
gi|188490149|gb|EDU65252.1| putative RNA-binding protein [Escherichia coli 53638]
gi|189001080|gb|EDU70066.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4076]
gi|189358707|gb|EDU77126.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4401]
gi|189364841|gb|EDU83257.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4501]
gi|189373951|gb|EDU92367.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC869]
gi|190901906|gb|EDV61655.1| putative RNA-binding protein [Escherichia coli B7A]
gi|194411728|gb|EDX28052.1| putative RNA-binding protein [Escherichia coli B171]
gi|208734357|gb|EDZ83044.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4045]
gi|208738304|gb|EDZ85986.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4042]
gi|209159101|gb|ACI36534.1| putative RNA-binding protein [Escherichia coli O157:H7 str. EC4115]
gi|209758238|gb|ACI77431.1| hypothetical protein ECs4059 [Escherichia coli]
gi|209758240|gb|ACI77432.1| hypothetical protein ECs4059 [Escherichia coli]
gi|209758242|gb|ACI77433.1| hypothetical protein ECs4059 [Escherichia coli]
gi|209758244|gb|ACI77434.1| hypothetical protein ECs4059 [Escherichia coli]
gi|209758246|gb|ACI77435.1| hypothetical protein ECs4059 [Escherichia coli]
gi|209913914|dbj|BAG78988.1| conserved hypothetical protein [Escherichia coli SE11]
gi|215266568|emb|CAS11007.1| predicted RNA-binding protein [Escherichia coli O127:H6 str.
E2348/69]
gi|217319785|gb|EEC28210.1| putative RNA-binding protein [Escherichia coli O157:H7 str.
TW14588]
gi|218353617|emb|CAU99815.1| putative RNA-binding protein [Escherichia coli 55989]
gi|218358004|emb|CAQ90650.1| putative RNA-binding protein [Escherichia fergusonii ATCC 35469]
gi|218362518|emb|CAR00142.1| putative RNA-binding protein [Escherichia coli IAI1]
gi|218367019|emb|CAR04790.1| putative RNA-binding protein [Escherichia coli S88]
gi|218371935|emb|CAR19791.1| putative RNA-binding protein [Escherichia coli IAI39]
gi|218429034|emb|CAR09980.2| putative RNA-binding protein [Escherichia coli ED1a]
gi|218433897|emb|CAR14814.1| putative RNA-binding protein [Escherichia coli UMN026]
gi|222034897|emb|CAP77640.1| RNA-binding protein yhbY [Escherichia coli LF82]
gi|226839969|gb|EEH71990.1| RNA-binding protein YhbY [Escherichia sp. 1_1_43]
gi|226899108|gb|EEH85367.1| RNA-binding protein yhbY [Escherichia sp. 3_2_53FAA]
gi|227835297|gb|EEJ45763.1| RNA-binding protein YhbY [Escherichia coli 83972]
gi|238863083|gb|ACR65081.1| predicted RNA-binding protein [Escherichia coli BW2952]
gi|242378723|emb|CAQ33513.1| predicted RNA-binding protein [Escherichia coli BL21(DE3)]
gi|253323030|gb|ACT27632.1| protein of unknown function UPF0044 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975023|gb|ACT40694.1| predicted RNA-binding protein [Escherichia coli B str. REL606]
gi|253979179|gb|ACT44849.1| predicted RNA-binding protein [Escherichia coli BL21(DE3)]
gi|254594529|gb|ACT73890.1| predicted RNA-binding protein [Escherichia coli O157:H7 str.
TW14359]
gi|257755956|dbj|BAI27458.1| predicted RNA-binding protein [Escherichia coli O26:H11 str. 11368]
gi|257761140|dbj|BAI32637.1| predicted RNA-binding protein [Escherichia coli O103:H2 str. 12009]
gi|257766287|dbj|BAI37782.1| predicted RNA-binding protein [Escherichia coli O111:H- str. 11128]
gi|260447793|gb|ACX38215.1| protein of unknown function UPF0044 [Escherichia coli DH1]
gi|281180222|dbj|BAI56552.1| conserved hypothetical protein [Escherichia coli SE15]
gi|281602563|gb|ADA75547.1| RNA-binding protein yhbY [Shigella flexneri 2002017]
gi|284923203|emb|CBG36297.1| conserved hypothetical protein [Escherichia coli 042]
gi|290764427|gb|ADD58388.1| hypothetical protein G2583_3905 [Escherichia coli O55:H7 str.
CB9615]
gi|291322604|gb|EFE62033.1| hypothetical protein ECCG_02546 [Escherichia coli B088]
gi|291426795|gb|EFE99827.1| RNA-binding protein yhbY [Escherichia coli FVEC1412]
gi|291431966|gb|EFF04949.1| hypothetical protein ECDG_03369 [Escherichia coli B185]
gi|291469323|gb|EFF11814.1| hypothetical protein ECEG_02567 [Escherichia coli B354]
gi|294489989|gb|ADE88745.1| putative RNA-binding protein [Escherichia coli IHE3034]
gi|298277670|gb|EFI19186.1| RNA-binding protein YhbY [Escherichia coli FVEC1302]
gi|299879901|gb|EFI88112.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
196-1]
gi|300300161|gb|EFJ56546.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
185-1]
gi|300307861|gb|EFJ62381.1| hypothetical protein HMPREF9553_01514 [Escherichia coli MS 200-1]
gi|300317361|gb|EFJ67145.1| hypothetical protein HMPREF9547_01627 [Escherichia coli MS 175-1]
gi|300358337|gb|EFJ74207.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
198-1]
gi|300397750|gb|EFJ81288.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS 69-1]
gi|300403690|gb|EFJ87228.1| hypothetical protein HMPREF9536_02450 [Escherichia coli MS 84-1]
gi|300407047|gb|EFJ90585.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS 45-1]
gi|300413934|gb|EFJ97244.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
115-1]
gi|300417868|gb|EFK01179.1| hypothetical protein HMPREF9548_04104 [Escherichia coli MS 182-1]
gi|300451687|gb|EFK15307.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
116-1]
gi|300456913|gb|EFK20406.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS 21-1]
gi|300462205|gb|EFK25698.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
187-1]
gi|300523624|gb|EFK44693.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
119-7]
gi|300529865|gb|EFK50927.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
107-1]
gi|300842743|gb|EFK70503.1| hypothetical protein HMPREF9347_00320 [Escherichia coli MS 124-1]
gi|300846906|gb|EFK74666.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS 78-1]
gi|301076797|gb|EFK91603.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
146-1]
gi|305850043|gb|EFM50502.1| RNA-binding protein YhbY [Escherichia coli NC101]
gi|306907026|gb|EFN37534.1| protein of unknown function UPF0044 [Escherichia coli W]
gi|307555274|gb|ADN48049.1| putative RNA-binding protein [Escherichia coli ABU 83972]
gi|307625221|gb|ADN69525.1| RNA-binding protein YhbY [Escherichia coli UM146]
gi|308122714|gb|EFO59976.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
145-7]
gi|309703606|emb|CBJ02946.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
gi|310334923|gb|EFQ01128.1| CRS1 / YhbY domain protein [Escherichia coli 1827-70]
gi|312286700|gb|EFR14611.1| CRS1 / YhbY domain protein [Escherichia coli 2362-75]
gi|312947737|gb|ADR28564.1| RNA-binding protein YhbY [Escherichia coli O83:H1 str. NRG 857C]
gi|313648577|gb|EFS13019.1| CRS1 / YhbY domain protein [Shigella flexneri 2a str. 2457T]
gi|315062486|gb|ADT76813.1| predicted RNA-binding protein [Escherichia coli W]
gi|315137766|dbj|BAJ44925.1| hypothetical protein ECDH1ME8569_3069 [Escherichia coli DH1]
gi|315257105|gb|EFU37073.1| RNA-binding protein YhbY [Escherichia coli MS 85-1]
gi|315288956|gb|EFU48354.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
110-3]
gi|315294887|gb|EFU54226.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS
153-1]
gi|315297890|gb|EFU57160.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS 16-3]
gi|315617263|gb|EFU97872.1| CRS1 / YhbY domain protein [Escherichia coli 3431]
gi|320174544|gb|EFW49680.1| RNA-binding protein YhbY [Shigella dysenteriae CDC 74-1112]
gi|320181455|gb|EFW56373.1| hypothetical protein SGB_01325 [Shigella boydii ATCC 9905]
gi|320186667|gb|EFW61391.1| hypothetical protein SGF_01115 [Shigella flexneri CDC 796-83]
gi|320189533|gb|EFW64192.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. EC1212]
gi|320194665|gb|EFW69295.1| RNA-binding protein YhbY [Escherichia coli WV_060327]
gi|320202094|gb|EFW76669.1| hypothetical protein ECoL_00722 [Escherichia coli EC4100B]
gi|320640251|gb|EFX09823.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. G5101]
gi|320645548|gb|EFX14557.1| RNA-binding protein YhbY [Escherichia coli O157:H- str. 493-89]
gi|320650858|gb|EFX19315.1| RNA-binding protein YhbY [Escherichia coli O157:H- str. H 2687]
gi|320656239|gb|EFX24151.1| RNA-binding protein YhbY [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320661929|gb|EFX29337.1| RNA-binding protein YhbY [Escherichia coli O55:H7 str. USDA 5905]
gi|320666764|gb|EFX33743.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. LSU-61]
gi|323154394|gb|EFZ40595.1| CRS1 / YhbY domain protein [Escherichia coli EPECa14]
gi|323162872|gb|EFZ48707.1| CRS1 / YhbY domain protein [Escherichia coli E128010]
gi|323165140|gb|EFZ50930.1| CRS1 / YhbY domain protein [Shigella sonnei 53G]
gi|323173560|gb|EFZ59189.1| CRS1 / YhbY domain protein [Escherichia coli LT-68]
gi|323178644|gb|EFZ64220.1| CRS1 / YhbY domain protein [Escherichia coli OK1180]
gi|323183134|gb|EFZ68532.1| CRS1 / YhbY domain protein [Escherichia coli OK1357]
gi|323189199|gb|EFZ74483.1| CRS1 / YhbY domain protein [Escherichia coli RN587/1]
gi|323376926|gb|ADX49194.1| protein of unknown function UPF0044 [Escherichia coli KO11FL]
gi|323936126|gb|EGB32420.1| CRS1/YhbY domain-containing protein [Escherichia coli E1520]
gi|323941720|gb|EGB37899.1| CRS1/YhbY domain-containing protein [Escherichia coli E482]
gi|323946966|gb|EGB42982.1| CRS1/YhbY domain-containing protein [Escherichia coli H120]
gi|323951301|gb|EGB47176.1| CRS1/YhbY domain-containing protein [Escherichia coli H252]
gi|323957673|gb|EGB53387.1| CRS1/YhbY domain-containing protein [Escherichia coli H263]
gi|323961165|gb|EGB56779.1| CRS1/YhbY domain-containing protein [Escherichia coli H489]
gi|323966360|gb|EGB61794.1| CRS1/YhbY domain-containing protein [Escherichia coli M863]
gi|323970257|gb|EGB65528.1| CRS1/YhbY domain-containing protein [Escherichia coli TA007]
gi|323979103|gb|EGB74181.1| CRS1/YhbY domain-containing protein [Escherichia coli TW10509]
gi|324008751|gb|EGB77970.1| hypothetical protein HMPREF9532_01542 [Escherichia coli MS 57-2]
gi|324012131|gb|EGB81350.1| conserved hypothetical protein TIGR00253 [Escherichia coli MS 60-1]
gi|324018295|gb|EGB87514.1| hypothetical protein HMPREF9542_03009 [Escherichia coli MS 117-3]
gi|324115216|gb|EGC09180.1| CRS1/YhbY domain-containing protein [Escherichia fergusonii B253]
gi|324119545|gb|EGC13427.1| CRS1/YhbY domain-containing protein [Escherichia coli E1167]
gi|325498761|gb|EGC96620.1| RNA-binding protein YhbY [Escherichia fergusonii ECD227]
gi|326337880|gb|EGD61714.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. 1125]
gi|326347450|gb|EGD71175.1| RNA-binding protein YhbY [Escherichia coli O157:H7 str. 1044]
gi|327251271|gb|EGE62960.1| CRS1 / YhbY domain protein [Escherichia coli STEC_7v]
gi|330909234|gb|EGH37748.1| RNA binding protein [Escherichia coli AA86]
gi|331037349|gb|EGI09573.1| RNA-binding protein YhbY [Escherichia coli H736]
gi|331042727|gb|EGI14869.1| RNA-binding protein YhbY [Escherichia coli M605]
gi|331048166|gb|EGI20243.1| RNA-binding protein YhbY [Escherichia coli M718]
gi|331054049|gb|EGI26078.1| RNA-binding protein YhbY [Escherichia coli TA206]
gi|331058040|gb|EGI30022.1| RNA-binding protein YhbY [Escherichia coli TA143]
gi|331062920|gb|EGI34834.1| RNA-binding protein YhbY [Escherichia coli TA271]
gi|331073324|gb|EGI44647.1| RNA-binding protein YhbY [Escherichia coli H591]
gi|331078442|gb|EGI49648.1| RNA-binding protein YhbY [Escherichia coli H299]
gi|332086090|gb|EGI91252.1| CRS1 / YhbY domain protein [Shigella boydii 5216-82]
gi|332086477|gb|EGI91624.1| CRS1 / YhbY domain protein [Shigella dysenteriae 155-74]
gi|332090688|gb|EGI95782.1| CRS1 / YhbY domain protein [Shigella boydii 3594-74]
gi|332102341|gb|EGJ05687.1| RNA-binding protein [Shigella sp. D9]
gi|332345136|gb|AEE58470.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|332752339|gb|EGJ82729.1| CRS1 / YhbY domain protein [Shigella flexneri 4343-70]
gi|332752865|gb|EGJ83250.1| CRS1 / YhbY domain protein [Shigella flexneri K-671]
gi|332754467|gb|EGJ84833.1| CRS1 / YhbY domain protein [Shigella flexneri 2747-71]
gi|332765176|gb|EGJ95403.1| CRS1 / YhbY domain protein [Shigella flexneri 2930-71]
gi|332999258|gb|EGK18844.1| CRS1 / YhbY domain protein [Shigella flexneri K-272]
gi|333000143|gb|EGK19726.1| CRS1 / YhbY domain protein [Shigella flexneri K-218]
gi|333014576|gb|EGK33923.1| CRS1 / YhbY domain protein [Shigella flexneri K-304]
gi|333971294|gb|AEG38099.1| RNA binding protein [Escherichia coli NA114]
gi|335574057|gb|EGM60395.1| CRS1 / YhbY domain protein [Shigella flexneri J1713]
gi|338768656|gb|EGP23446.1| hypothetical protein PPECC33_31120 [Escherichia coli PCN033]
gi|339416911|gb|AEJ58583.1| CRS1 / YhbY domain protein [Escherichia coli UMNF18]
gi|340732718|gb|EGR61854.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 01-09591]
gi|340738284|gb|EGR72533.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. LB226692]
gi|341919284|gb|EGT68896.1| yhbY [Escherichia coli O104:H4 str. C227-11]
gi|342362300|gb|EGU26421.1| RNA-binding protein YhbY [Escherichia coli XH140A]
gi|342929222|gb|EGU97944.1| RNA-binding protein YhbY [Escherichia coli MS 79-10]
gi|344193067|gb|EGV47151.1| RNA-binding protein YhbY [Escherichia coli XH001]
gi|345333179|gb|EGW65631.1| CRS1 / YhbY domain protein [Escherichia coli STEC_C165-02]
gi|345333904|gb|EGW66350.1| CRS1 / YhbY domain protein [Escherichia coli 2534-86]
gi|345336253|gb|EGW68690.1| CRS1 / YhbY domain protein [Escherichia coli STEC_B2F1]
gi|345348090|gb|EGW80388.1| CRS1 / YhbY domain protein [Escherichia coli STEC_94C]
gi|345349746|gb|EGW82023.1| CRS1 / YhbY domain protein [Escherichia coli 3030-1]
gi|345355547|gb|EGW87757.1| CRS1 / YhbY domain protein [Escherichia coli STEC_DG131-3]
gi|345360630|gb|EGW92799.1| CRS1 / YhbY domain protein [Escherichia coli STEC_EH250]
gi|345371035|gb|EGX03009.1| CRS1 / YhbY domain protein [Escherichia coli STEC_MHI813]
gi|345372914|gb|EGX04877.1| CRS1 / YhbY domain protein [Escherichia coli G58-1]
gi|345374469|gb|EGX06421.1| CRS1 / YhbY domain protein [Escherichia coli STEC_H.1.8]
gi|345385991|gb|EGX15828.1| CRS1 / YhbY domain protein [Escherichia coli STEC_S1191]
gi|345391560|gb|EGX21347.1| CRS1 / YhbY domain protein [Escherichia coli TX1999]
gi|349739722|gb|AEQ14428.1| RNA binding protein associated with pre-50S ribosomal subunits
[Escherichia coli O7:K1 str. CE10]
gi|354860543|gb|EHF20989.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. C236-11]
gi|354863861|gb|EHF24292.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. C227-11]
gi|354865775|gb|EHF26203.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 04-8351]
gi|354872199|gb|EHF32594.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 09-7901]
gi|354878542|gb|EHF38891.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-3677]
gi|354887085|gb|EHF47362.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4404]
gi|354890975|gb|EHF51211.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4522]
gi|354895390|gb|EHF55577.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4623]
gi|354906874|gb|EHF66945.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354909897|gb|EHF69927.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354911982|gb|EHF71984.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354914731|gb|EHF74713.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4632 C4]
gi|354922079|gb|EHF81997.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-4632 C5]
gi|355350346|gb|EHF99546.1| RNA-binding protein YhbY [Escherichia coli cloneA_i1]
gi|355421961|gb|AER86158.1| RNA-binding protein YhbY [Escherichia coli str. 'clone D i2']
gi|355426881|gb|AER91077.1| RNA-binding protein YhbY [Escherichia coli str. 'clone D i14']
gi|359333377|dbj|BAL39824.1| predicted RNA-binding protein [Escherichia coli str. K-12 substr.
MDS42]
gi|371594331|gb|EHN83199.1| RNA-binding protein YhbY [Escherichia coli H494]
gi|371601130|gb|EHN89898.1| RNA-binding protein YhbY [Escherichia coli TA124]
gi|371604936|gb|EHN93560.1| RNA-binding protein yhbY [Escherichia coli H397]
gi|371606332|gb|EHN94929.1| RNA-binding protein yhbY [Escherichia coli E101]
gi|371613091|gb|EHO01592.1| hypothetical protein ESNG_00095 [Escherichia coli B093]
gi|373246336|gb|EHP65790.1| RNA-binding protein YhbY [Escherichia coli 4_1_47FAA]
gi|374360578|gb|AEZ42285.1| RNA-binding protein YhbY [Escherichia coli O55:H7 str. RM12579]
gi|375323098|gb|EHS68821.1| RNA-binding protein YhbY [Escherichia coli O157:H43 str. T22]
gi|377840765|gb|EHU05835.1| CRS1 / YhbY domain protein [Escherichia coli DEC1A]
gi|377841417|gb|EHU06483.1| CRS1 / YhbY domain protein [Escherichia coli DEC1C]
gi|377844586|gb|EHU09622.1| CRS1 / YhbY domain protein [Escherichia coli DEC1B]
gi|377854699|gb|EHU19576.1| RNA-binding protein YhbY [Escherichia coli DEC1D]
gi|377857899|gb|EHU22747.1| CRS1 / YhbY domain protein [Escherichia coli DEC1E]
gi|377861366|gb|EHU26186.1| RNA-binding protein YhbY [Escherichia coli DEC2A]
gi|377871832|gb|EHU36490.1| CRS1 / YhbY domain protein [Escherichia coli DEC2B]
gi|377874570|gb|EHU39197.1| CRS1 / YhbY domain protein [Escherichia coli DEC2C]
gi|377876908|gb|EHU41507.1| CRS1 / YhbY domain protein [Escherichia coli DEC2D]
gi|377887141|gb|EHU51619.1| CRS1 / YhbY domain protein [Escherichia coli DEC2E]
gi|377890951|gb|EHU55404.1| CRS1 / YhbY domain protein [Escherichia coli DEC3A]
gi|377891803|gb|EHU56255.1| CRS1 / YhbY domain protein [Escherichia coli DEC3B]
gi|377903621|gb|EHU67912.1| CRS1 / YhbY domain protein [Escherichia coli DEC3C]
gi|377907804|gb|EHU72027.1| CRS1 / YhbY domain protein [Escherichia coli DEC3D]
gi|377909675|gb|EHU73875.1| CRS1 / YhbY domain protein [Escherichia coli DEC3E]
gi|377919094|gb|EHU83137.1| CRS1 / YhbY domain protein [Escherichia coli DEC3F]
gi|377924489|gb|EHU88436.1| CRS1 / YhbY domain protein [Escherichia coli DEC4A]
gi|377928751|gb|EHU92661.1| CRS1 / YhbY domain protein [Escherichia coli DEC4B]
gi|377939106|gb|EHV02863.1| CRS1 / YhbY domain protein [Escherichia coli DEC4D]
gi|377939987|gb|EHV03739.1| CRS1 / YhbY domain protein [Escherichia coli DEC4C]
gi|377945933|gb|EHV09623.1| CRS1 / YhbY domain protein [Escherichia coli DEC4E]
gi|377955135|gb|EHV18692.1| CRS1 / YhbY domain protein [Escherichia coli DEC4F]
gi|377958536|gb|EHV22049.1| CRS1 / YhbY domain protein [Escherichia coli DEC5A]
gi|377963405|gb|EHV26852.1| CRS1 / YhbY domain protein [Escherichia coli DEC5B]
gi|377971697|gb|EHV35051.1| CRS1 / YhbY domain protein [Escherichia coli DEC5C]
gi|377972841|gb|EHV36186.1| CRS1 / YhbY domain protein [Escherichia coli DEC5D]
gi|377982867|gb|EHV46119.1| RNA-binding protein YhbY [Escherichia coli DEC5E]
gi|377990285|gb|EHV53446.1| CRS1 / YhbY domain protein [Escherichia coli DEC6B]
gi|377991785|gb|EHV54935.1| RNA-binding protein YhbY [Escherichia coli DEC6A]
gi|377994612|gb|EHV57738.1| RNA-binding protein YhbY [Escherichia coli DEC6C]
gi|378005255|gb|EHV68260.1| RNA-binding protein YhbY [Escherichia coli DEC6D]
gi|378007950|gb|EHV70913.1| CRS1 / YhbY domain protein [Escherichia coli DEC6E]
gi|378013808|gb|EHV76725.1| RNA-binding protein YhbY [Escherichia coli DEC7A]
gi|378021872|gb|EHV84567.1| CRS1 / YhbY domain protein [Escherichia coli DEC7C]
gi|378025952|gb|EHV88592.1| CRS1 / YhbY domain protein [Escherichia coli DEC7D]
gi|378030807|gb|EHV93400.1| CRS1 / YhbY domain protein [Escherichia coli DEC7B]
gi|378036245|gb|EHV98789.1| RNA-binding protein YhbY [Escherichia coli DEC7E]
gi|378044487|gb|EHW06904.1| RNA-binding protein YhbY [Escherichia coli DEC8A]
gi|378050829|gb|EHW13156.1| CRS1 / YhbY domain protein [Escherichia coli DEC8C]
gi|378051151|gb|EHW13470.1| CRS1 / YhbY domain protein [Escherichia coli DEC8B]
gi|378060162|gb|EHW22361.1| CRS1 / YhbY domain protein [Escherichia coli DEC8D]
gi|378063524|gb|EHW25693.1| CRS1 / YhbY domain protein [Escherichia coli DEC8E]
gi|378070371|gb|EHW32450.1| CRS1 / YhbY domain protein [Escherichia coli DEC9A]
gi|378075116|gb|EHW37144.1| CRS1 / YhbY domain protein [Escherichia coli DEC9B]
gi|378080751|gb|EHW42708.1| CRS1 / YhbY domain protein [Escherichia coli DEC9C]
gi|378088244|gb|EHW50099.1| CRS1 / YhbY domain protein [Escherichia coli DEC9D]
gi|378091526|gb|EHW53356.1| CRS1 / YhbY domain protein [Escherichia coli DEC9E]
gi|378098101|gb|EHW59844.1| CRS1 / YhbY domain protein [Escherichia coli DEC10A]
gi|378103375|gb|EHW65044.1| CRS1 / YhbY domain protein [Escherichia coli DEC10B]
gi|378108219|gb|EHW69835.1| CRS1 / YhbY domain protein [Escherichia coli DEC10C]
gi|378114266|gb|EHW75823.1| CRS1 / YhbY domain protein [Escherichia coli DEC10D]
gi|378125809|gb|EHW87207.1| CRS1 / YhbY domain protein [Escherichia coli DEC10E]
gi|378127038|gb|EHW88430.1| CRS1 / YhbY domain protein [Escherichia coli DEC11A]
gi|378127228|gb|EHW88618.1| CRS1 / YhbY domain protein [Escherichia coli DEC10F]
gi|378139373|gb|EHX00613.1| CRS1 / YhbY domain protein [Escherichia coli DEC11B]
gi|378145927|gb|EHX07082.1| RNA-binding protein YhbY [Escherichia coli DEC11D]
gi|378147886|gb|EHX09031.1| RNA-binding protein YhbY [Escherichia coli DEC11C]
gi|378156228|gb|EHX17280.1| RNA-binding protein YhbY [Escherichia coli DEC11E]
gi|378162574|gb|EHX23534.1| CRS1 / YhbY domain protein [Escherichia coli DEC12B]
gi|378166574|gb|EHX27496.1| RNA-binding protein YhbY [Escherichia coli DEC12A]
gi|378167609|gb|EHX28521.1| RNA-binding protein YhbY [Escherichia coli DEC12C]
gi|378180056|gb|EHX40758.1| CRS1 / YhbY domain protein [Escherichia coli DEC12D]
gi|378184171|gb|EHX44808.1| CRS1 / YhbY domain protein [Escherichia coli DEC12E]
gi|378184878|gb|EHX45514.1| CRS1 / YhbY domain protein [Escherichia coli DEC13A]
gi|378197211|gb|EHX57694.1| CRS1 / YhbY domain protein [Escherichia coli DEC13C]
gi|378197771|gb|EHX58247.1| CRS1 / YhbY domain protein [Escherichia coli DEC13B]
gi|378200729|gb|EHX61183.1| CRS1 / YhbY domain protein [Escherichia coli DEC13D]
gi|378210431|gb|EHX70785.1| CRS1 / YhbY domain protein [Escherichia coli DEC13E]
gi|378214467|gb|EHX74774.1| RNA-binding protein YhbY [Escherichia coli DEC14A]
gi|378216762|gb|EHX77046.1| CRS1 / YhbY domain protein [Escherichia coli DEC14B]
gi|378226151|gb|EHX86344.1| CRS1 / YhbY domain protein [Escherichia coli DEC14C]
gi|378229392|gb|EHX89533.1| CRS1 / YhbY domain protein [Escherichia coli DEC14D]
gi|378235590|gb|EHX95658.1| CRS1 / YhbY domain protein [Escherichia coli DEC15A]
gi|378241372|gb|EHY01339.1| CRS1 / YhbY domain protein [Escherichia coli DEC15B]
gi|378245975|gb|EHY05912.1| CRS1 / YhbY domain protein [Escherichia coli DEC15C]
gi|378253439|gb|EHY13317.1| CRS1 / YhbY domain protein [Escherichia coli DEC15D]
gi|378257692|gb|EHY17529.1| CRS1 / YhbY domain protein [Escherichia coli DEC15E]
gi|380346863|gb|EIA35153.1| RNA-binding protein YhbY [Escherichia coli SCI-07]
gi|383391379|gb|AFH16337.1| RNA-binding protein YhbY [Escherichia coli KO11FL]
gi|383406779|gb|AFH13022.1| RNA-binding protein YhbY [Escherichia coli W]
gi|383468483|gb|EID63504.1| RNA-binding protein YhbY [Shigella flexneri 5a str. M90T]
gi|383476167|gb|EID68114.1| RNA-binding protein YhbY [Escherichia coli W26]
gi|384380231|gb|EIE38097.1| RNA-binding protein YhbY [Escherichia coli J53]
gi|384471650|gb|EIE55722.1| RNA-binding protein YhbY [Escherichia coli AI27]
gi|385156562|gb|EIF18558.1| RNA-binding protein YhbY [Escherichia coli O32:H37 str. P4]
gi|385538132|gb|EIF84997.1| RNA-binding protein YhbY [Escherichia coli M919]
gi|385709854|gb|EIG46847.1| RNA-binding protein YhbY [Escherichia coli B799]
gi|385710174|gb|EIG47166.1| RNA-binding protein YhbY [Escherichia coli H730]
gi|386120661|gb|EIG69285.1| RNA-binding protein YhbY [Escherichia sp. 4_1_40B]
gi|386140158|gb|EIG81313.1| RNA-binding protein, YhbY family [Escherichia coli 1.2741]
gi|386147001|gb|EIG93446.1| RNA-binding protein, YhbY family [Escherichia coli 97.0246]
gi|386151085|gb|EIH02374.1| RNA-binding protein, YhbY family [Escherichia coli 5.0588]
gi|386157779|gb|EIH14117.1| RNA-binding protein, YhbY family [Escherichia coli 97.0259]
gi|386163187|gb|EIH24983.1| RNA-binding protein, YhbY family [Escherichia coli 1.2264]
gi|386166855|gb|EIH33375.1| RNA-binding protein, YhbY family [Escherichia coli 96.0497]
gi|386173499|gb|EIH45511.1| RNA-binding protein, YhbY family [Escherichia coli 99.0741]
gi|386178788|gb|EIH56267.1| RNA-binding protein, YhbY family [Escherichia coli 3.2608]
gi|386183997|gb|EIH66744.1| RNA-binding protein, YhbY family [Escherichia coli 93.0624]
gi|386188876|gb|EIH77665.1| RNA-binding protein, YhbY family [Escherichia coli 4.0522]
gi|386195548|gb|EIH89783.1| RNA-binding protein, YhbY family [Escherichia coli JB1-95]
gi|386202450|gb|EII01441.1| RNA-binding protein, YhbY family [Escherichia coli 96.154]
gi|386207600|gb|EII12105.1| RNA-binding protein, YhbY family [Escherichia coli 5.0959]
gi|386210450|gb|EII20924.1| RNA-binding protein, YhbY family [Escherichia coli 9.0111]
gi|386219604|gb|EII36068.1| RNA-binding protein, YhbY family [Escherichia coli 4.0967]
gi|386222110|gb|EII44539.1| RNA-binding protein, YhbY family [Escherichia coli 2.3916]
gi|386229970|gb|EII57325.1| RNA-binding protein, YhbY family [Escherichia coli 3.3884]
gi|386234960|gb|EII66936.1| RNA-binding protein, YhbY family [Escherichia coli 2.4168]
gi|386240930|gb|EII77849.1| RNA-binding protein, YhbY family [Escherichia coli 3.2303]
gi|386245373|gb|EII87103.1| RNA-binding protein, YhbY family [Escherichia coli 3003]
gi|386250594|gb|EII96761.1| RNA-binding protein, YhbY family [Escherichia coli TW07793]
gi|386254270|gb|EIJ03960.1| RNA-binding protein, YhbY family [Escherichia coli B41]
gi|386259979|gb|EIJ15453.1| RNA-binding protein, YhbY family [Escherichia coli 900105 (10e)]
gi|386797822|gb|AFJ30856.1| RNA-binding protein YhbY [Escherichia coli Xuzhou21]
gi|388334068|gb|EIL00676.1| RNA-binding protein YhbY [Escherichia coli O103:H25 str. CVM9340]
gi|388339184|gb|EIL05570.1| RNA-binding protein YhbY [Escherichia coli O111:H11 str. CVM9534]
gi|388345568|gb|EIL11338.1| RNA-binding protein YhbY [Escherichia coli O103:H2 str. CVM9450]
gi|388352616|gb|EIL17726.1| RNA-binding protein YhbY [Escherichia coli O111:H8 str. CVM9570]
gi|388353492|gb|EIL18498.1| RNA-binding protein YhbY [Escherichia coli O111:H8 str. CVM9574]
gi|388358349|gb|EIL22816.1| RNA-binding protein YhbY [Escherichia coli O111:H11 str. CVM9545]
gi|388368845|gb|EIL32466.1| RNA-binding protein YhbY [Escherichia coli O26:H11 str. CVM9942]
gi|388372704|gb|EIL36117.1| hypothetical protein ECO10026_21076 [Escherichia coli O26:H11 str.
CVM10026]
gi|388387180|gb|EIL48805.1| RNA-binding protein YhbY [Escherichia coli KD2]
gi|388389171|gb|EIL50707.1| RNA-binding protein YhbY [Escherichia coli KD1]
gi|388396001|gb|EIL57135.1| RNA-binding protein YhbY [Escherichia coli 541-15]
gi|388405441|gb|EIL65871.1| RNA-binding protein YhbY [Escherichia coli 576-1]
gi|388407055|gb|EIL67431.1| RNA-binding protein YhbY [Escherichia coli 541-1]
gi|388407733|gb|EIL68097.1| RNA-binding protein YhbY [Escherichia coli 75]
gi|388413536|gb|EIL73528.1| RNA-binding protein YhbY [Escherichia coli HM605]
gi|388422120|gb|EIL81709.1| RNA-binding protein YhbY [Escherichia coli CUMT8]
gi|390638999|gb|EIN18487.1| RNA-binding protein, YhbY family [Escherichia coli FRIK1996]
gi|390640556|gb|EIN20008.1| RNA-binding protein, YhbY family [Escherichia coli FDA517]
gi|390640764|gb|EIN20209.1| RNA-binding protein, YhbY family [Escherichia coli FDA505]
gi|390658304|gb|EIN36101.1| RNA-binding protein, YhbY family [Escherichia coli FRIK1985]
gi|390658386|gb|EIN36181.1| RNA-binding protein, YhbY family [Escherichia coli 93-001]
gi|390661374|gb|EIN39032.1| RNA-binding protein, YhbY family [Escherichia coli FRIK1990]
gi|390675354|gb|EIN51505.1| RNA-binding protein, YhbY family [Escherichia coli PA3]
gi|390678677|gb|EIN54623.1| RNA-binding protein, YhbY family [Escherichia coli PA5]
gi|390682291|gb|EIN58061.1| RNA-binding protein, YhbY family [Escherichia coli PA9]
gi|390693931|gb|EIN68544.1| RNA-binding protein, YhbY family [Escherichia coli PA10]
gi|390698298|gb|EIN72683.1| RNA-binding protein, YhbY family [Escherichia coli PA14]
gi|390698994|gb|EIN73362.1| RNA-binding protein, YhbY family [Escherichia coli PA15]
gi|390712974|gb|EIN85918.1| RNA-binding protein, YhbY family [Escherichia coli PA22]
gi|390719761|gb|EIN92479.1| RNA-binding protein, YhbY family [Escherichia coli PA25]
gi|390721384|gb|EIN94079.1| RNA-binding protein, YhbY family [Escherichia coli PA24]
gi|390725518|gb|EIN98020.1| RNA-binding protein, YhbY family [Escherichia coli PA28]
gi|390738998|gb|EIO10191.1| RNA-binding protein, YhbY family [Escherichia coli PA31]
gi|390739721|gb|EIO10882.1| RNA-binding protein, YhbY family [Escherichia coli PA32]
gi|390743160|gb|EIO14145.1| RNA-binding protein, YhbY family [Escherichia coli PA33]
gi|390756821|gb|EIO26322.1| RNA-binding protein, YhbY family [Escherichia coli PA40]
gi|390763756|gb|EIO32983.1| RNA-binding protein, YhbY family [Escherichia coli PA39]
gi|390764935|gb|EIO34125.1| RNA-binding protein, YhbY family [Escherichia coli PA41]
gi|390766467|gb|EIO35586.1| RNA-binding protein, YhbY family [Escherichia coli PA42]
gi|390780640|gb|EIO48340.1| RNA-binding protein, YhbY family [Escherichia coli TW06591]
gi|390787493|gb|EIO54978.1| RNA-binding protein, YhbY family [Escherichia coli TW07945]
gi|390788819|gb|EIO56284.1| RNA-binding protein, YhbY family [Escherichia coli TW10246]
gi|390794757|gb|EIO62047.1| RNA-binding protein, YhbY family [Escherichia coli TW11039]
gi|390802536|gb|EIO69572.1| RNA-binding protein, YhbY family [Escherichia coli TW09098]
gi|390805773|gb|EIO72709.1| RNA-binding protein, YhbY family [Escherichia coli TW09109]
gi|390814597|gb|EIO81161.1| RNA-binding protein, YhbY family [Escherichia coli TW10119]
gi|390823962|gb|EIO89977.1| RNA-binding protein, YhbY family [Escherichia coli EC4203]
gi|390825883|gb|EIO91771.1| RNA-binding protein, YhbY family [Escherichia coli TW09195]
gi|390828798|gb|EIO94435.1| RNA-binding protein, YhbY family [Escherichia coli EC4196]
gi|390843292|gb|EIP07098.1| RNA-binding protein, YhbY family [Escherichia coli TW14313]
gi|390844107|gb|EIP07869.1| RNA-binding protein, YhbY family [Escherichia coli TW14301]
gi|390848804|gb|EIP12257.1| RNA-binding protein, YhbY family [Escherichia coli EC4421]
gi|390859178|gb|EIP21532.1| RNA-binding protein, YhbY family [Escherichia coli EC4422]
gi|390863737|gb|EIP25868.1| RNA-binding protein, YhbY family [Escherichia coli EC4013]
gi|390868390|gb|EIP30141.1| RNA-binding protein, YhbY family [Escherichia coli EC4402]
gi|390876512|gb|EIP37497.1| RNA-binding protein, YhbY family [Escherichia coli EC4439]
gi|390881946|gb|EIP42498.1| RNA-binding protein, YhbY family [Escherichia coli EC4436]
gi|390891613|gb|EIP51235.1| RNA-binding protein, YhbY family [Escherichia coli EC4437]
gi|390893637|gb|EIP53177.1| RNA-binding protein, YhbY family [Escherichia coli EC4448]
gi|390898884|gb|EIP58145.1| RNA-binding protein, YhbY family [Escherichia coli EC1738]
gi|390907064|gb|EIP65933.1| RNA-binding protein, YhbY family [Escherichia coli EC1734]
gi|390917194|gb|EIP75627.1| RNA-binding protein, YhbY family [Escherichia coli EC1863]
gi|390918198|gb|EIP76609.1| RNA-binding protein, YhbY family [Escherichia coli EC1845]
gi|391246557|gb|EIQ05818.1| RNA-binding protein YhbY [Shigella flexneri 2850-71]
gi|391248101|gb|EIQ07345.1| RNA-binding protein YhbY [Shigella flexneri CCH060]
gi|391259363|gb|EIQ18437.1| RNA-binding protein YhbY [Shigella flexneri K-315]
gi|391263846|gb|EIQ22846.1| RNA-binding protein YhbY [Shigella flexneri K-404]
gi|391267320|gb|EIQ26257.1| RNA-binding protein YhbY [Shigella boydii 965-58]
gi|391274970|gb|EIQ33769.1| RNA-binding protein YhbY [Shigella boydii 4444-74]
gi|391278609|gb|EIQ37310.1| RNA-binding protein YhbY [Shigella sonnei 3226-85]
gi|391282407|gb|EIQ41039.1| RNA-binding protein YhbY [Shigella sonnei 3233-85]
gi|391292544|gb|EIQ50865.1| CRS1 / YhbY domain protein [Shigella sonnei 4822-66]
gi|391298779|gb|EIQ56770.1| RNA-binding protein YhbY [Shigella dysenteriae 225-75]
gi|391303224|gb|EIQ61065.1| RNA-binding protein YhbY [Escherichia coli EPECa12]
gi|391310974|gb|EIQ68624.1| CRS1 / YhbY domain protein [Escherichia coli EPEC C342-62]
gi|394380411|gb|EJE58155.1| RNA-binding protein YhbY [Escherichia coli O26:H11 str. CVM10224]
gi|394380724|gb|EJE58465.1| RNA-binding protein YhbY [Escherichia coli O111:H8 str. CVM9634]
gi|394391367|gb|EJE68239.1| RNA-binding protein YhbY [Escherichia coli O111:H8 str. CVM9602]
gi|394400997|gb|EJE76858.1| RNA-binding protein YhbY [Escherichia coli O26:H11 str. CVM10021]
gi|394417852|gb|EJE91564.1| RNA-binding protein YhbY [Escherichia coli O111:H11 str. CVM9553]
gi|394420583|gb|EJE94105.1| RNA-binding protein YhbY [Escherichia coli O26:H11 str. CVM9952]
gi|394423892|gb|EJE97103.1| RNA-binding protein YhbY [Escherichia coli O111:H11 str. CVM9455]
gi|394432984|gb|EJF05047.1| RNA-binding protein YhbY [Escherichia coli O26:H11 str. CVM10030]
gi|397783914|gb|EJK94771.1| CRS1 / YhbY domain protein [Escherichia coli STEC_O31]
gi|397895284|gb|EJL11716.1| CRS1 / YhbY domain protein [Shigella flexneri 6603-63]
gi|397896331|gb|EJL12750.1| CRS1 / YhbY domain protein [Shigella sonnei str. Moseley]
gi|404336562|gb|EJZ63022.1| CRS1 / YhbY domain protein [Shigella flexneri 1485-80]
gi|406775912|gb|AFS55336.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407052486|gb|AFS72537.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 2011C-3493]
gi|407067189|gb|AFS88236.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408063112|gb|EKG97611.1| RNA-binding protein, YhbY family [Escherichia coli PA7]
gi|408065326|gb|EKG99801.1| RNA-binding protein, YhbY family [Escherichia coli FRIK920]
gi|408067691|gb|EKH02121.1| RNA-binding protein, YhbY family [Escherichia coli PA34]
gi|408077585|gb|EKH11784.1| RNA-binding protein, YhbY family [Escherichia coli FDA506]
gi|408081045|gb|EKH15079.1| RNA-binding protein, YhbY family [Escherichia coli FDA507]
gi|408089614|gb|EKH22918.1| RNA-binding protein, YhbY family [Escherichia coli FDA504]
gi|408095821|gb|EKH28785.1| RNA-binding protein, YhbY family [Escherichia coli FRIK1999]
gi|408102315|gb|EKH34730.1| RNA-binding protein, YhbY family [Escherichia coli FRIK1997]
gi|408106728|gb|EKH38821.1| RNA-binding protein, YhbY family [Escherichia coli NE1487]
gi|408113506|gb|EKH45096.1| RNA-binding protein, YhbY family [Escherichia coli NE037]
gi|408119586|gb|EKH50646.1| RNA-binding protein, YhbY family [Escherichia coli FRIK2001]
gi|408125728|gb|EKH56318.1| RNA-binding protein, YhbY family [Escherichia coli PA4]
gi|408135765|gb|EKH65535.1| RNA-binding protein, YhbY family [Escherichia coli PA23]
gi|408138363|gb|EKH68032.1| RNA-binding protein, YhbY family [Escherichia coli PA49]
gi|408144814|gb|EKH74028.1| RNA-binding protein, YhbY family [Escherichia coli PA45]
gi|408153114|gb|EKH81518.1| RNA-binding protein, YhbY family [Escherichia coli TT12B]
gi|408158218|gb|EKH86342.1| RNA-binding protein, YhbY family [Escherichia coli MA6]
gi|408162199|gb|EKH90114.1| RNA-binding protein, YhbY family [Escherichia coli 5905]
gi|408171474|gb|EKH98589.1| RNA-binding protein, YhbY family [Escherichia coli CB7326]
gi|408178238|gb|EKI04959.1| RNA-binding protein, YhbY family [Escherichia coli EC96038]
gi|408181520|gb|EKI08075.1| RNA-binding protein, YhbY family [Escherichia coli 5412]
gi|408191027|gb|EKI16647.1| RNA-binding protein, YhbY family [Escherichia coli TW15901]
gi|408199017|gb|EKI24226.1| RNA-binding protein, YhbY family [Escherichia coli ARS4.2123]
gi|408199763|gb|EKI24953.1| RNA-binding protein, YhbY family [Escherichia coli TW00353]
gi|408210946|gb|EKI35502.1| RNA-binding protein, YhbY family [Escherichia coli 3006]
gi|408211524|gb|EKI36070.1| RNA-binding protein, YhbY family [Escherichia coli 07798]
gi|408214963|gb|EKI39369.1| RNA-binding protein, YhbY family [Escherichia coli PA38]
gi|408225105|gb|EKI48794.1| RNA-binding protein, YhbY family [Escherichia coli EC1735]
gi|408226349|gb|EKI49996.1| RNA-binding protein, YhbY family [Escherichia coli N1]
gi|408236273|gb|EKI59177.1| RNA-binding protein, YhbY family [Escherichia coli EC1736]
gi|408240073|gb|EKI62786.1| RNA-binding protein, YhbY family [Escherichia coli EC1737]
gi|408244587|gb|EKI67007.1| RNA-binding protein, YhbY family [Escherichia coli EC1846]
gi|408253342|gb|EKI74940.1| RNA-binding protein, YhbY family [Escherichia coli EC1847]
gi|408257250|gb|EKI78573.1| RNA-binding protein, YhbY family [Escherichia coli EC1848]
gi|408263809|gb|EKI84637.1| RNA-binding protein, YhbY family [Escherichia coli EC1849]
gi|408272360|gb|EKI92450.1| RNA-binding protein, YhbY family [Escherichia coli EC1850]
gi|408275395|gb|EKI95357.1| RNA-binding protein, YhbY family [Escherichia coli EC1856]
gi|408283665|gb|EKJ02813.1| RNA-binding protein, YhbY family [Escherichia coli EC1862]
gi|408289656|gb|EKJ08412.1| RNA-binding protein, YhbY family [Escherichia coli EC1864]
gi|408294596|gb|EKJ12978.1| RNA-binding protein, YhbY family [Escherichia coli EC1865]
gi|408305512|gb|EKJ22905.1| RNA-binding protein, YhbY family [Escherichia coli EC1868]
gi|408306072|gb|EKJ23449.1| RNA-binding protein, YhbY family [Escherichia coli EC1866]
gi|408316951|gb|EKJ33201.1| RNA-binding protein, YhbY family [Escherichia coli EC1869]
gi|408322551|gb|EKJ38530.1| RNA-binding protein, YhbY family [Escherichia coli EC1870]
gi|408324876|gb|EKJ40797.1| RNA-binding protein, YhbY family [Escherichia coli NE098]
gi|408334971|gb|EKJ49836.1| RNA-binding protein, YhbY family [Escherichia coli FRIK523]
gi|408341786|gb|EKJ56224.1| RNA-binding protein, YhbY family [Escherichia coli 0.1288]
gi|408344356|gb|EKJ58726.1| RNA-binding protein, YhbY family [Escherichia coli 0.1304]
gi|408459929|gb|EKJ83709.1| RNA-binding protein YhbY [Escherichia coli AD30]
gi|408547169|gb|EKK24568.1| RNA-binding protein YhbY [Escherichia coli 5.2239]
gi|408547219|gb|EKK24617.1| RNA-binding protein YhbY [Escherichia coli 3.4870]
gi|408548635|gb|EKK26017.1| RNA-binding protein, YhbY family [Escherichia coli 6.0172]
gi|408565292|gb|EKK41379.1| RNA-binding protein, YhbY family [Escherichia coli 8.0566]
gi|408565601|gb|EKK41684.1| RNA-binding protein YhbY [Escherichia coli 8.0586]
gi|408566622|gb|EKK42689.1| RNA-binding protein YhbY [Escherichia coli 8.0569]
gi|408577381|gb|EKK52956.1| RNA-binding protein, YhbY family [Escherichia coli 10.0833]
gi|408579649|gb|EKK55101.1| RNA-binding protein YhbY [Escherichia coli 8.2524]
gi|408589528|gb|EKK64038.1| RNA-binding protein YhbY [Escherichia coli 10.0869]
gi|408595053|gb|EKK69321.1| RNA-binding protein YhbY [Escherichia coli 88.0221]
gi|408599750|gb|EKK73639.1| RNA-binding protein, YhbY family [Escherichia coli 8.0416]
gi|408610456|gb|EKK83827.1| RNA-binding protein YhbY [Escherichia coli 10.0821]
gi|412964564|emb|CCK48493.1| hypothetical protein BN16_38171 [Escherichia coli chi7122]
gi|412971152|emb|CCJ45807.1| hypothetical protein BN17_31231 [Escherichia coli]
gi|421944527|gb|EKU01779.1| RNA-binding protein YhbY [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421947490|gb|EKU04562.1| RNA-binding protein YhbY [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421947784|gb|EKU04841.1| RNA-binding protein YhbY [Escherichia coli O111:H8 str.
CFSAN001632]
gi|427202544|gb|EKV72868.1| RNA-binding protein YhbY [Escherichia coli 88.1042]
gi|427203652|gb|EKV73951.1| RNA-binding protein YhbY [Escherichia coli 89.0511]
gi|427206455|gb|EKV76667.1| RNA-binding protein YhbY [Escherichia coli 88.1467]
gi|427218859|gb|EKV87839.1| RNA-binding protein YhbY [Escherichia coli 90.0091]
gi|427222401|gb|EKV91184.1| RNA-binding protein YhbY [Escherichia coli 90.2281]
gi|427225654|gb|EKV94279.1| RNA-binding protein YhbY [Escherichia coli 90.0039]
gi|427239660|gb|EKW07138.1| RNA-binding protein YhbY [Escherichia coli 93.0056]
gi|427240104|gb|EKW07571.1| RNA-binding protein YhbY [Escherichia coli 93.0055]
gi|427243917|gb|EKW11265.1| RNA-binding protein YhbY [Escherichia coli 94.0618]
gi|427258383|gb|EKW24473.1| RNA-binding protein YhbY [Escherichia coli 95.0183]
gi|427259276|gb|EKW25335.1| RNA-binding protein YhbY [Escherichia coli 95.0943]
gi|427261898|gb|EKW27814.1| RNA-binding protein YhbY [Escherichia coli 95.1288]
gi|427274572|gb|EKW39220.1| RNA-binding protein YhbY [Escherichia coli 96.0428]
gi|427277201|gb|EKW41743.1| RNA-binding protein YhbY [Escherichia coli 96.0427]
gi|427281528|gb|EKW45838.1| RNA-binding protein YhbY [Escherichia coli 96.0939]
gi|427289955|gb|EKW53454.1| RNA-binding protein YhbY [Escherichia coli 96.0932]
gi|427297012|gb|EKW60056.1| RNA-binding protein YhbY [Escherichia coli 96.0107]
gi|427298794|gb|EKW61788.1| RNA-binding protein YhbY [Escherichia coli 97.0003]
gi|427309726|gb|EKW72023.1| RNA-binding protein YhbY [Escherichia coli 97.1742]
gi|427312958|gb|EKW75094.1| RNA-binding protein YhbY [Escherichia coli 97.0007]
gi|427317283|gb|EKW79189.1| RNA-binding protein YhbY [Escherichia coli 99.0672]
gi|427326136|gb|EKW87562.1| RNA-binding protein, YhbY family [Escherichia coli 99.0678]
gi|427327509|gb|EKW88896.1| RNA-binding protein YhbY [Escherichia coli 99.0713]
gi|429251933|gb|EKY36495.1| RNA-binding protein YhbY [Escherichia coli 96.0109]
gi|429253389|gb|EKY37877.1| RNA-binding protein YhbY [Escherichia coli 97.0010]
gi|429346590|gb|EKY83369.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-02092]
gi|429356569|gb|EKY93244.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-02033-1]
gi|429357444|gb|EKY94117.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-02030]
gi|429372736|gb|EKZ09285.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-02093]
gi|429374677|gb|EKZ11216.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-02281]
gi|429378359|gb|EKZ14873.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-02318]
gi|429388539|gb|EKZ24964.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-02913]
gi|429391308|gb|EKZ27712.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-03439]
gi|429392317|gb|EKZ28718.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-03943]
gi|429402806|gb|EKZ39096.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. 11-04080]
gi|429404002|gb|EKZ40282.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-9990]
gi|429407665|gb|EKZ43916.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-9450]
gi|429415112|gb|EKZ51282.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-4984]
gi|429418566|gb|EKZ54709.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-4986]
gi|429424833|gb|EKZ60931.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-4987]
gi|429429023|gb|EKZ65094.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-4988]
gi|429433686|gb|EKZ69717.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-5603]
gi|429435230|gb|EKZ71249.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-6006]
gi|429440972|gb|EKZ76946.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-5604]
gi|429445910|gb|EKZ81849.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec12-0465]
gi|429455675|gb|EKZ91530.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec12-0466]
gi|429459390|gb|EKZ95209.1| RNA-binding protein YhbY [Escherichia coli O104:H4 str. Ec11-9941]
gi|430873414|gb|ELB96988.1| RNA-binding protein YhbY [Escherichia coli KTE2]
gi|430874673|gb|ELB98229.1| RNA-binding protein YhbY [Escherichia coli KTE4]
gi|430884193|gb|ELC07164.1| RNA-binding protein YhbY [Escherichia coli KTE5]
gi|430891976|gb|ELC14497.1| RNA-binding protein YhbY [Escherichia coli KTE10]
gi|430896480|gb|ELC18715.1| RNA-binding protein YhbY [Escherichia coli KTE12]
gi|430904411|gb|ELC26120.1| RNA-binding protein YhbY [Escherichia coli KTE16]
gi|430905970|gb|ELC27578.1| RNA-binding protein YhbY [Escherichia coli KTE15]
gi|430913739|gb|ELC34860.1| RNA-binding protein YhbY [Escherichia coli KTE25]
gi|430915450|gb|ELC36529.1| RNA-binding protein YhbY [Escherichia coli KTE21]
gi|430923947|gb|ELC44680.1| RNA-binding protein YhbY [Escherichia coli KTE26]
gi|430928260|gb|ELC48811.1| RNA-binding protein YhbY [Escherichia coli KTE28]
gi|430933934|gb|ELC54325.1| RNA-binding protein YhbY [Escherichia coli KTE39]
gi|430937095|gb|ELC57357.1| RNA-binding protein YhbY [Escherichia coli KTE44]
gi|430942903|gb|ELC63034.1| RNA-binding protein YhbY [Escherichia coli KTE178]
gi|430951582|gb|ELC70802.1| RNA-binding protein YhbY [Escherichia coli KTE187]
gi|430952483|gb|ELC71547.1| RNA-binding protein YhbY [Escherichia coli KTE181]
gi|430961220|gb|ELC79267.1| RNA-binding protein YhbY [Escherichia coli KTE188]
gi|430964875|gb|ELC82321.1| RNA-binding protein YhbY [Escherichia coli KTE189]
gi|430977854|gb|ELC94677.1| RNA-binding protein YhbY [Escherichia coli KTE193]
gi|430980520|gb|ELC97280.1| RNA-binding protein YhbY [Escherichia coli KTE201]
gi|430986456|gb|ELD03027.1| RNA-binding protein YhbY [Escherichia coli KTE204]
gi|430991985|gb|ELD08384.1| RNA-binding protein YhbY [Escherichia coli KTE205]
gi|430996317|gb|ELD12603.1| RNA-binding protein YhbY [Escherichia coli KTE206]
gi|431002747|gb|ELD18254.1| RNA-binding protein YhbY [Escherichia coli KTE208]
gi|431005016|gb|ELD20225.1| RNA-binding protein YhbY [Escherichia coli KTE210]
gi|431014635|gb|ELD28343.1| RNA-binding protein YhbY [Escherichia coli KTE212]
gi|431019013|gb|ELD32443.1| RNA-binding protein YhbY [Escherichia coli KTE213]
gi|431021863|gb|ELD35184.1| RNA-binding protein YhbY [Escherichia coli KTE214]
gi|431026660|gb|ELD39731.1| RNA-binding protein YhbY [Escherichia coli KTE216]
gi|431036201|gb|ELD47577.1| RNA-binding protein YhbY [Escherichia coli KTE220]
gi|431039184|gb|ELD50070.1| RNA-binding protein YhbY [Escherichia coli KTE224]
gi|431048619|gb|ELD58595.1| RNA-binding protein YhbY [Escherichia coli KTE228]
gi|431049165|gb|ELD59129.1| RNA-binding protein YhbY [Escherichia coli KTE230]
gi|431058607|gb|ELD68000.1| RNA-binding protein YhbY [Escherichia coli KTE234]
gi|431060997|gb|ELD70317.1| RNA-binding protein YhbY [Escherichia coli KTE233]
gi|431067397|gb|ELD76002.1| RNA-binding protein YhbY [Escherichia coli KTE235]
gi|431072264|gb|ELD80016.1| RNA-binding protein YhbY [Escherichia coli KTE236]
gi|431078018|gb|ELD85077.1| RNA-binding protein YhbY [Escherichia coli KTE237]
gi|431082601|gb|ELD88915.1| RNA-binding protein YhbY [Escherichia coli KTE47]
gi|431089168|gb|ELD94992.1| RNA-binding protein YhbY [Escherichia coli KTE49]
gi|431091076|gb|ELD96826.1| RNA-binding protein YhbY [Escherichia coli KTE51]
gi|431098304|gb|ELE03627.1| RNA-binding protein YhbY [Escherichia coli KTE53]
gi|431105964|gb|ELE10298.1| RNA-binding protein YhbY [Escherichia coli KTE55]
gi|431113283|gb|ELE16953.1| RNA-binding protein YhbY [Escherichia coli KTE56]
gi|431118923|gb|ELE21942.1| RNA-binding protein YhbY [Escherichia coli KTE58]
gi|431121903|gb|ELE24772.1| RNA-binding protein YhbY [Escherichia coli KTE57]
gi|431126783|gb|ELE29130.1| RNA-binding protein YhbY [Escherichia coli KTE60]
gi|431129303|gb|ELE31479.1| RNA-binding protein YhbY [Escherichia coli KTE62]
gi|431136321|gb|ELE38190.1| RNA-binding protein YhbY [Escherichia coli KTE67]
gi|431138317|gb|ELE40153.1| RNA-binding protein YhbY [Escherichia coli KTE66]
gi|431147374|gb|ELE48797.1| RNA-binding protein YhbY [Escherichia coli KTE72]
gi|431152185|gb|ELE53143.1| RNA-binding protein YhbY [Escherichia coli KTE75]
gi|431157153|gb|ELE57807.1| RNA-binding protein YhbY [Escherichia coli KTE76]
gi|431161145|gb|ELE61630.1| RNA-binding protein YhbY [Escherichia coli KTE77]
gi|431168187|gb|ELE68441.1| RNA-binding protein YhbY [Escherichia coli KTE80]
gi|431169130|gb|ELE69359.1| RNA-binding protein YhbY [Escherichia coli KTE81]
gi|431178485|gb|ELE78394.1| RNA-binding protein YhbY [Escherichia coli KTE83]
gi|431179206|gb|ELE79113.1| RNA-binding protein YhbY [Escherichia coli KTE86]
gi|431188507|gb|ELE87949.1| RNA-binding protein YhbY [Escherichia coli KTE87]
gi|431188879|gb|ELE88320.1| RNA-binding protein YhbY [Escherichia coli KTE93]
gi|431197470|gb|ELE96319.1| RNA-binding protein YhbY [Escherichia coli KTE111]
gi|431198428|gb|ELE97251.1| RNA-binding protein YhbY [Escherichia coli KTE116]
gi|431208507|gb|ELF06720.1| RNA-binding protein YhbY [Escherichia coli KTE119]
gi|431211856|gb|ELF09810.1| RNA-binding protein YhbY [Escherichia coli KTE142]
gi|431218078|gb|ELF15562.1| RNA-binding protein YhbY [Escherichia coli KTE143]
gi|431219988|gb|ELF17376.1| RNA-binding protein YhbY [Escherichia coli KTE156]
gi|431232128|gb|ELF27804.1| RNA-binding protein YhbY [Escherichia coli KTE162]
gi|431236505|gb|ELF31711.1| RNA-binding protein YhbY [Escherichia coli KTE161]
gi|431241183|gb|ELF35630.1| RNA-binding protein YhbY [Escherichia coli KTE169]
gi|431241705|gb|ELF36141.1| RNA-binding protein YhbY [Escherichia coli KTE171]
gi|431253891|gb|ELF47369.1| RNA-binding protein YhbY [Escherichia coli KTE8]
gi|431255958|gb|ELF49036.1| RNA-binding protein YhbY [Escherichia coli KTE6]
gi|431261138|gb|ELF53229.1| RNA-binding protein YhbY [Escherichia coli KTE9]
gi|431263586|gb|ELF55572.1| RNA-binding protein YhbY [Escherichia coli KTE17]
gi|431271831|gb|ELF62950.1| RNA-binding protein YhbY [Escherichia coli KTE18]
gi|431280129|gb|ELF71058.1| RNA-binding protein YhbY [Escherichia coli KTE42]
gi|431282080|gb|ELF72978.1| RNA-binding protein YhbY [Escherichia coli KTE23]
gi|431290277|gb|ELF81002.1| RNA-binding protein YhbY [Escherichia coli KTE43]
gi|431294831|gb|ELF85010.1| RNA-binding protein YhbY [Escherichia coli KTE29]
gi|431300390|gb|ELF89943.1| RNA-binding protein YhbY [Escherichia coli KTE22]
gi|431308124|gb|ELF96412.1| RNA-binding protein YhbY [Escherichia coli KTE48]
gi|431316430|gb|ELG04240.1| RNA-binding protein YhbY [Escherichia coli KTE54]
gi|431322717|gb|ELG10302.1| RNA-binding protein YhbY [Escherichia coli KTE50]
gi|431325438|gb|ELG12826.1| RNA-binding protein YhbY [Escherichia coli KTE59]
gi|431328310|gb|ELG15630.1| RNA-binding protein YhbY [Escherichia coli KTE63]
gi|431336188|gb|ELG23317.1| RNA-binding protein YhbY [Escherichia coli KTE65]
gi|431338475|gb|ELG25562.1| RNA-binding protein YhbY [Escherichia coli KTE78]
gi|431346695|gb|ELG33599.1| RNA-binding protein YhbY [Escherichia coli KTE84]
gi|431350060|gb|ELG36888.1| RNA-binding protein YhbY [Escherichia coli KTE79]
gi|431353884|gb|ELG40637.1| RNA-binding protein YhbY [Escherichia coli KTE91]
gi|431360652|gb|ELG47254.1| RNA-binding protein YhbY [Escherichia coli KTE101]
gi|431361955|gb|ELG48534.1| RNA-binding protein YhbY [Escherichia coli KTE115]
gi|431366412|gb|ELG52910.1| RNA-binding protein YhbY [Escherichia coli KTE118]
gi|431378603|gb|ELG63594.1| RNA-binding protein YhbY [Escherichia coli KTE123]
gi|431382889|gb|ELG67032.1| RNA-binding protein YhbY [Escherichia coli KTE136]
gi|431383671|gb|ELG67795.1| RNA-binding protein YhbY [Escherichia coli KTE135]
gi|431387621|gb|ELG71445.1| RNA-binding protein YhbY [Escherichia coli KTE140]
gi|431393739|gb|ELG77303.1| RNA-binding protein YhbY [Escherichia coli KTE141]
gi|431398739|gb|ELG82159.1| RNA-binding protein YhbY [Escherichia coli KTE144]
gi|431402849|gb|ELG86154.1| RNA-binding protein YhbY [Escherichia coli KTE146]
gi|431409613|gb|ELG92788.1| RNA-binding protein YhbY [Escherichia coli KTE147]
gi|431414941|gb|ELG97492.1| RNA-binding protein YhbY [Escherichia coli KTE158]
gi|431418356|gb|ELH00760.1| RNA-binding protein YhbY [Escherichia coli KTE154]
gi|431424183|gb|ELH06280.1| RNA-binding protein YhbY [Escherichia coli KTE192]
gi|431429277|gb|ELH11207.1| RNA-binding protein YhbY [Escherichia coli KTE194]
gi|431431682|gb|ELH13457.1| RNA-binding protein YhbY [Escherichia coli KTE165]
gi|431436841|gb|ELH18355.1| RNA-binding protein YhbY [Escherichia coli KTE190]
gi|431437224|gb|ELH18737.1| RNA-binding protein YhbY [Escherichia coli KTE173]
gi|431442123|gb|ELH23230.1| RNA-binding protein YhbY [Escherichia coli KTE175]
gi|431451381|gb|ELH31857.1| RNA-binding protein YhbY [Escherichia coli KTE184]
gi|431455878|gb|ELH36233.1| RNA-binding protein YhbY [Escherichia coli KTE196]
gi|431461478|gb|ELH41746.1| RNA-binding protein YhbY [Escherichia coli KTE183]
gi|431465411|gb|ELH45521.1| RNA-binding protein YhbY [Escherichia coli KTE197]
gi|431468958|gb|ELH48891.1| RNA-binding protein YhbY [Escherichia coli KTE203]
gi|431472214|gb|ELH52106.1| RNA-binding protein YhbY [Escherichia coli KTE202]
gi|431479886|gb|ELH59619.1| RNA-binding protein YhbY [Escherichia coli KTE207]
gi|431487454|gb|ELH67099.1| RNA-binding protein YhbY [Escherichia coli KTE209]
gi|431489879|gb|ELH69504.1| RNA-binding protein YhbY [Escherichia coli KTE211]
gi|431496290|gb|ELH75874.1| RNA-binding protein YhbY [Escherichia coli KTE215]
gi|431503743|gb|ELH82478.1| RNA-binding protein YhbY [Escherichia coli KTE218]
gi|431505861|gb|ELH84466.1| RNA-binding protein YhbY [Escherichia coli KTE223]
gi|431511459|gb|ELH89591.1| RNA-binding protein YhbY [Escherichia coli KTE227]
gi|431522414|gb|ELH99649.1| RNA-binding protein YhbY [Escherichia coli KTE229]
gi|431527376|gb|ELI04092.1| RNA-binding protein YhbY [Escherichia coli KTE104]
gi|431528649|gb|ELI05356.1| RNA-binding protein YhbY [Escherichia coli KTE105]
gi|431541779|gb|ELI17218.1| RNA-binding protein YhbY [Escherichia coli KTE109]
gi|431547812|gb|ELI22107.1| RNA-binding protein YhbY [Escherichia coli KTE112]
gi|431549428|gb|ELI23509.1| RNA-binding protein YhbY [Escherichia coli KTE113]
gi|431554469|gb|ELI28350.1| RNA-binding protein YhbY [Escherichia coli KTE117]
gi|431563005|gb|ELI36248.1| RNA-binding protein YhbY [Escherichia coli KTE120]
gi|431566995|gb|ELI40010.1| RNA-binding protein YhbY [Escherichia coli KTE124]
gi|431567696|gb|ELI40689.1| RNA-binding protein YhbY [Escherichia coli KTE122]
gi|431579335|gb|ELI51919.1| RNA-binding protein YhbY [Escherichia coli KTE125]
gi|431580556|gb|ELI53115.1| RNA-binding protein YhbY [Escherichia coli KTE128]
gi|431584836|gb|ELI56811.1| RNA-binding protein YhbY [Escherichia coli KTE129]
gi|431594575|gb|ELI64855.1| RNA-binding protein YhbY [Escherichia coli KTE131]
gi|431598648|gb|ELI68436.1| RNA-binding protein YhbY [Escherichia coli KTE133]
gi|431602744|gb|ELI72174.1| RNA-binding protein YhbY [Escherichia coli KTE137]
gi|431608218|gb|ELI77566.1| RNA-binding protein YhbY [Escherichia coli KTE138]
gi|431613577|gb|ELI82773.1| RNA-binding protein YhbY [Escherichia coli KTE139]
gi|431617051|gb|ELI86073.1| RNA-binding protein YhbY [Escherichia coli KTE145]
gi|431625034|gb|ELI93628.1| RNA-binding protein YhbY [Escherichia coli KTE148]
gi|431632262|gb|ELJ00565.1| RNA-binding protein YhbY [Escherichia coli KTE153]
gi|431639781|gb|ELJ07630.1| RNA-binding protein YhbY [Escherichia coli KTE157]
gi|431641625|gb|ELJ09360.1| RNA-binding protein YhbY [Escherichia coli KTE160]
gi|431644478|gb|ELJ12140.1| RNA-binding protein YhbY [Escherichia coli KTE163]
gi|431654450|gb|ELJ21505.1| RNA-binding protein YhbY [Escherichia coli KTE166]
gi|431657192|gb|ELJ24159.1| RNA-binding protein YhbY [Escherichia coli KTE167]
gi|431658999|gb|ELJ25906.1| RNA-binding protein YhbY [Escherichia coli KTE168]
gi|431668172|gb|ELJ34704.1| RNA-binding protein YhbY [Escherichia coli KTE174]
gi|431671470|gb|ELJ37751.1| RNA-binding protein YhbY [Escherichia coli KTE176]
gi|431675076|gb|ELJ41222.1| RNA-binding protein YhbY [Escherichia coli KTE177]
gi|431684935|gb|ELJ50540.1| RNA-binding protein YhbY [Escherichia coli KTE179]
gi|431686425|gb|ELJ51991.1| RNA-binding protein YhbY [Escherichia coli KTE180]
gi|431689842|gb|ELJ55337.1| RNA-binding protein YhbY [Escherichia coli KTE232]
gi|431698559|gb|ELJ63586.1| RNA-binding protein YhbY [Escherichia coli KTE82]
gi|431703156|gb|ELJ67845.1| RNA-binding protein YhbY [Escherichia coli KTE88]
gi|431703513|gb|ELJ68200.1| RNA-binding protein YhbY [Escherichia coli KTE85]
gi|431713932|gb|ELJ78140.1| RNA-binding protein YhbY [Escherichia coli KTE90]
gi|431717324|gb|ELJ81423.1| RNA-binding protein YhbY [Escherichia coli KTE95]
gi|431718464|gb|ELJ82538.1| RNA-binding protein YhbY [Escherichia coli KTE94]
gi|431728663|gb|ELJ92336.1| RNA-binding protein YhbY [Escherichia coli KTE97]
gi|431732702|gb|ELJ96152.1| RNA-binding protein YhbY [Escherichia coli KTE99]
gi|432346196|gb|ELL40686.1| RNA-binding protein YhbY [Escherichia coli J96]
gi|441607167|emb|CCP96408.1| FIG004454: RNA binding protein [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441654407|emb|CCQ00956.1| FIG004454: RNA binding protein [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|441713866|emb|CCQ06193.1| FIG004454: RNA binding protein [Escherichia coli Nissle 1917]
gi|443423761|gb|AGC88665.1| RNA-binding protein YhbY [Escherichia coli APEC O78]
gi|444536140|gb|ELV16172.1| RNA-binding protein YhbY [Escherichia coli 99.0814]
gi|444537891|gb|ELV17799.1| RNA-binding protein YhbY [Escherichia coli 09BKT078844]
gi|444546318|gb|ELV25071.1| RNA-binding protein YhbY [Escherichia coli 99.0815]
gi|444555734|gb|ELV33178.1| RNA-binding protein YhbY [Escherichia coli 99.0839]
gi|444556098|gb|ELV33529.1| RNA-binding protein YhbY [Escherichia coli 99.0816]
gi|444561147|gb|ELV38279.1| RNA-binding protein YhbY [Escherichia coli 99.0848]
gi|444570355|gb|ELV46886.1| RNA-binding protein YhbY [Escherichia coli 99.1753]
gi|444574238|gb|ELV50556.1| RNA-binding protein YhbY [Escherichia coli 99.1775]
gi|444577518|gb|ELV53643.1| RNA-binding protein YhbY [Escherichia coli 99.1793]
gi|444590782|gb|ELV66081.1| RNA-binding protein YhbY [Escherichia coli PA11]
gi|444591016|gb|ELV66313.1| RNA-binding protein YhbY [Escherichia coli ATCC 700728]
gi|444591835|gb|ELV67097.1| RNA-binding protein YhbY [Escherichia coli 99.1805]
gi|444604600|gb|ELV79265.1| RNA-binding protein YhbY [Escherichia coli PA13]
gi|444605647|gb|ELV80288.1| RNA-binding protein YhbY [Escherichia coli PA19]
gi|444613789|gb|ELV88039.1| RNA-binding protein YhbY [Escherichia coli PA2]
gi|444621466|gb|ELV95442.1| RNA-binding protein YhbY [Escherichia coli PA47]
gi|444622064|gb|ELV96029.1| RNA-binding protein YhbY [Escherichia coli PA48]
gi|444628295|gb|ELW02039.1| RNA-binding protein YhbY [Escherichia coli PA8]
gi|444636342|gb|ELW09743.1| RNA-binding protein YhbY [Escherichia coli 7.1982]
gi|444638838|gb|ELW12163.1| RNA-binding protein YhbY [Escherichia coli 99.1781]
gi|444643348|gb|ELW16506.1| RNA-binding protein YhbY [Escherichia coli 99.1762]
gi|444652807|gb|ELW25556.1| RNA-binding protein YhbY [Escherichia coli PA35]
gi|444658138|gb|ELW30600.1| RNA-binding protein YhbY [Escherichia coli 3.4880]
gi|444661247|gb|ELW33574.1| RNA-binding protein YhbY [Escherichia coli 95.0083]
gi|444668279|gb|ELW40301.1| RNA-binding protein YhbY [Escherichia coli 99.0670]
gi|449314708|gb|EMD04870.1| RNA-binding protein YhbY [Escherichia coli O08]
gi|449316006|gb|EMD06131.1| RNA-binding protein YhbY [Escherichia coli S17]
gi|449317791|gb|EMD07875.1| RNA-binding protein YhbY [Escherichia coli SEPT362]
Length = 97
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKI------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V+ + TG+ V IG+T+++YRP+
Sbjct: 53 TEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPT 88
>gi|320540169|ref|ZP_08039824.1| putative RNA-binding protein [Serratia symbiotica str. Tucson]
gi|320029835|gb|EFW11859.1| putative RNA-binding protein [Serratia symbiotica str. Tucson]
Length = 97
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTCP 85
L K+K+ L AH L + ++G G+T+GV+ +TLE +EL+K+KI R
Sbjct: 3 LNNKQKQHLKGLAHPLKPVV---MLGNHGLTEGVLAEIEQTLEHHELIKVKIAAEDRETK 59
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ D + + TG+ V IG T+I+YRPS
Sbjct: 60 TLIADAIVR---ETGACNVQVIGNTLILYRPS 88
>gi|312866303|ref|ZP_07726521.1| RNA-binding protein, YhbY family [Streptococcus downei F0415]
gi|311097997|gb|EFQ56223.1| RNA-binding protein, YhbY family [Streptococcus downei F0415]
Length = 103
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH++ ++ VGK+G+ D + TS + L+A EL+K+K+ + +
Sbjct: 3 LTSKQRAFLNSQAHTMKPVVQ---VGKNGLNDQIKTSVRQALDARELIKVKLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V LEE G+ V++ G + +Y+ S
Sbjct: 60 HEVADILEEEIGAQSVAKTGCVLTLYKQS 88
>gi|387626935|ref|YP_006063111.1| hypothetical protein INV104_14910 [Streptococcus pneumoniae INV104]
gi|444382382|ref|ZP_21180585.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PCS8106]
gi|444385618|ref|ZP_21183690.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PCS8203]
gi|301794721|emb|CBW37172.1| conserved hypothetical protein [Streptococcus pneumoniae INV104]
gi|444249688|gb|ELU56176.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PCS8203]
gi|444252656|gb|ELU59118.1| RNA-binding protein, YhbY family [Streptococcus pneumoniae PCS8106]
Length = 103
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K++ L S AH+L ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LASKQRAFLNSQAHTLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 60 HEVAEILEEEIGVDTVQKIGRILILFKQS 88
>gi|189425291|ref|YP_001952468.1| hypothetical protein Glov_2232 [Geobacter lovleyi SZ]
gi|189421550|gb|ACD95948.1| protein of unknown function UPF0044 [Geobacter lovleyi SZ]
Length = 109
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 21 RSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI 80
R + L LT K+K+ L HSL + L+GK + + ++ L +EL+K+K+
Sbjct: 4 RERIELIMLTGKQKRHLRGLGHSLKPVI---LIGKKELDEALIAETEAALACHELIKVKV 60
Query: 81 HRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
C + + + L EATGS V +G+T ++YR ++
Sbjct: 61 LENCMLDRHEAAEALSEATGSDVAQVLGKTFLLYRAAV 98
>gi|386347550|ref|YP_006045799.1| hypothetical protein [Spirochaeta thermophila DSM 6578]
gi|339412517|gb|AEJ62082.1| protein of unknown function UPF0044 [Spirochaeta thermophila DSM
6578]
Length = 104
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 33 EKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVV 92
++ L AH L + VGK+G+ +GV + + LE NEL+K++ E ED+
Sbjct: 8 QRSALIRMAHDLDPAV---YVGKAGLAEGVFRALDDALERNELVKVRF-VAWKDEREDLA 63
Query: 93 KQLEEATGSAVVSQIGQTVIIYRPS 117
++L E G+ +V+ IG + YR +
Sbjct: 64 RELAERLGALLVAVIGHVAVFYREA 88
>gi|340758656|ref|ZP_08695241.1| hypothetical protein FVAG_00028 [Fusobacterium varium ATCC 27725]
gi|251833776|gb|EES62339.1| hypothetical protein FVAG_00028 [Fusobacterium varium ATCC 27725]
Length = 102
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L AH L ++ +GK GVT+ ++ S +E +++ ELLK+KI + C E
Sbjct: 3 LTSKQRAFLKKKAHELNPLVR---IGKDGVTESLIQSILEAIDSRELLKVKILQNCEKEK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E+V+++L + + +V IG+T+I++R +
Sbjct: 60 EEVLEELSKCSEFEIVGIIGRTIILFREN 88
>gi|404496625|ref|YP_006720731.1| RNA-binding protein YhbY [Geobacter metallireducens GS-15]
gi|418066704|ref|ZP_12704063.1| protein of unknown function UPF0044 [Geobacter metallireducens
RCH3]
gi|373560017|gb|EHP86293.1| protein of unknown function UPF0044 [Geobacter metallireducens
RCH3]
gi|403378063|gb|ABB31995.2| RNA-binding protein YhbY [Geobacter metallireducens GS-15]
Length = 98
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L HSL + VGK ++ +V E LE +EL+K+KI +C +
Sbjct: 2 LTGKQKRFLRGMGHSLNPVIT---VGKGEISTPLVRETSEALEHHELIKVKILESCIMDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+V +L +A G+ V +G+T ++YR
Sbjct: 59 HEVADELAKACGAEVAQVLGRTFLLYR 85
>gi|325924513|ref|ZP_08186032.1| hypothetical protein TIGR00253 [Xanthomonas gardneri ATCC 19865]
gi|325545008|gb|EGD16343.1| hypothetical protein TIGR00253 [Xanthomonas gardneri ATCC 19865]
Length = 101
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + E LE +EL+K+K+
Sbjct: 5 LTSAQNRFLRGQAHDLKALLQT---GGKGVTPAFLAELEEVLERHELIKVKVASEDREAR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + + TGSA+V +IG I+YRPS
Sbjct: 62 DAMIADITQKTGSALVQRIGHVAILYRPS 90
>gi|285017953|ref|YP_003375664.1| hypothetical protein XALc_1162 [Xanthomonas albilineans GPE PC73]
gi|283473171|emb|CBA15677.1| hypothetical protein XALC_1162 [Xanthomonas albilineans GPE PC73]
Length = 101
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+LT + + L AH L L+ +G GVT + E LE +EL+K+K+
Sbjct: 4 RLTPSQNRFLRGLAHDLKPLLQ---IGSKGVTTAFLAELDEVLERHELVKVKVGSDDRET 60
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + L E + SA+V +IG T I+YRP+
Sbjct: 61 RDSAIGSLIEQSHSALVQRIGHTAILYRPA 90
>gi|420163036|ref|ZP_14669783.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM095]
gi|420167991|ref|ZP_14674643.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM087]
gi|420211256|ref|ZP_14716630.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM001]
gi|394234725|gb|EJD80299.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM095]
gi|394238019|gb|EJD83505.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM087]
gi|394281709|gb|EJE25935.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM001]
Length = 97
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ ETLE EL+KI I + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPTFQ---IGKGGINENMIQQISETLEKRELIKIHILQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+D+ + + T S +V IG +++Y+ S
Sbjct: 59 KDLAAIVSQQTQSELVQIIGAMIVLYKES 87
>gi|375257549|ref|YP_005016719.1| RNA-binding protein YhbY [Klebsiella oxytoca KCTC 1686]
gi|397660163|ref|YP_006500865.1| RNA binding protein [Klebsiella oxytoca E718]
gi|402840088|ref|ZP_10888557.1| RNA-binding protein, YhbY family [Klebsiella sp. OBRC7]
gi|421729352|ref|ZP_16168489.1| RNA-binding protein YhbY [Klebsiella oxytoca M5al]
gi|365907027|gb|AEX02480.1| RNA-binding protein YhbY [Klebsiella oxytoca KCTC 1686]
gi|394348232|gb|AFN34353.1| RNA binding protein [Klebsiella oxytoca E718]
gi|402287038|gb|EJU35498.1| RNA-binding protein, YhbY family [Klebsiella sp. OBRC7]
gi|410369894|gb|EKP24638.1| RNA-binding protein YhbY [Klebsiella oxytoca M5al]
Length = 97
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 59 KTLIVEAIVRETGACNVQVIGKTLVLYRPT 88
>gi|449459492|ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic-like [Cucumis sativus]
Length = 1032
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 19/141 (13%)
Query: 16 VKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANEL 75
+ P P +P+L+ KE+ L A + KKL VGKS V GV + E + + L
Sbjct: 894 INQPGYFPANVPQLSNKERLLLRRQALKM-KKLPVLSVGKSNVITGVAKAIKEHFKKHSL 952
Query: 76 LKIKIHRTCPG-ELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVY 134
+ + G ++++V +LE+ATG+ +VSQ VI+YR + E++KQ+A
Sbjct: 953 AIVNVKGRAKGTSVQEIVFKLEQATGAVLVSQEPSKVILYR----GWEEEDRKQKA---- 1004
Query: 135 VRKESKLKPLLLKKAGVSRLS 155
++K +G RLS
Sbjct: 1005 ---------TMMKNSGEDRLS 1016
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 11 EAVEEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQL-VGKSGVTDGVVTSFIET 69
+ V E K R+P L +L++ E+ EL ++G +LK +L VGK+G+T+G+V + E
Sbjct: 145 DGVREKKREERAP-SLAELSLTEE-ELGRL-RTIGIRLKKKLNVGKAGITEGIVNTIHEY 201
Query: 70 LEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR------PSLTRMKL 123
+E++KI C ++ LE TG VV + G +I+YR P + L
Sbjct: 202 WRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVVWRSGSKIILYRGPNYIYPYFSHEIL 261
Query: 124 EEKKQQ 129
E++ Q
Sbjct: 262 EDEGSQ 267
>gi|294634506|ref|ZP_06713041.1| RNA-binding protein YhbY [Edwardsiella tarda ATCC 23685]
gi|451966460|ref|ZP_21919713.1| putative RNA-binding protein [Edwardsiella tarda NBRC 105688]
gi|291092020|gb|EFE24581.1| RNA-binding protein YhbY [Edwardsiella tarda ATCC 23685]
gi|451314761|dbj|GAC65075.1| putative RNA-binding protein [Edwardsiella tarda NBRC 105688]
Length = 97
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTC 84
LT K+K+ L S AHSL ++ +G +G+T+GV+ + L +EL+K+KI R
Sbjct: 2 NLTNKQKQHLKSLAHSLKPVVQ---LGANGLTEGVLAEIEQALAHHELIKVKIAAEERET 58
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ D + + TG+ V IG ++IYRPS
Sbjct: 59 KTLIADAIVR---ETGACNVQLIGNVLVIYRPS 88
>gi|366166417|ref|ZP_09466172.1| hypothetical protein AcelC_22357 [Acetivibrio cellulolyticus CD2]
Length = 96
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S A+++ + VGK G+ D +V F + LEA EL+K+ + + +
Sbjct: 2 LTGKQRSYLRSLANNIDPIFQ---VGKGGINDNMVKQFNDALEARELIKVSVLKNSVDDT 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + T S VV IG ++Y+ S
Sbjct: 59 REVCNEAANLTDSEVVQVIGNKFVLYKES 87
>gi|82778494|ref|YP_404843.1| RNA-binding protein YhbY [Shigella dysenteriae Sd197]
gi|309785508|ref|ZP_07680139.1| CRS1 / YhbY domain protein [Shigella dysenteriae 1617]
gi|81242642|gb|ABB63352.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|308926628|gb|EFP72104.1| CRS1 / YhbY domain protein [Shigella dysenteriae 1617]
Length = 97
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKI------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V+ + TG+ V IG+T+++YRP+
Sbjct: 53 TEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPT 88
>gi|403668287|ref|ZP_10933562.1| hypothetical protein KJC8E_05836 [Kurthia sp. JC8E]
Length = 100
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV++ + L EL+K++I C +
Sbjct: 2 LTGKQKRFLRAEAHHLDPIFQ---VGKGGVSEMQCRQIEKALAVRELIKVRILDNCEFDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRV 133
+ V +QL E T + +V IG TV++Y+ E KK+ RR+
Sbjct: 59 KTVAEQLAEGTDAELVQLIGLTVVLYK--------EAKKRDDRRI 95
>gi|255318894|ref|ZP_05360120.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262378851|ref|ZP_06072008.1| RNA-binding protein [Acinetobacter radioresistens SH164]
gi|421464760|ref|ZP_15913449.1| RNA-binding protein, YhbY family [Acinetobacter radioresistens
WC-A-157]
gi|421857649|ref|ZP_16289978.1| putative RNA-binding protein [Acinetobacter radioresistens DSM 6976
= NBRC 102413]
gi|255304150|gb|EET83341.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262300136|gb|EEY88048.1| RNA-binding protein [Acinetobacter radioresistens SH164]
gi|400204689|gb|EJO35672.1| RNA-binding protein, YhbY family [Acinetobacter radioresistens
WC-A-157]
gi|403186912|dbj|GAB76179.1| putative RNA-binding protein [Acinetobacter radioresistens DSM 6976
= NBRC 102413]
Length = 107
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HR 82
+ L+++E+K L H+L + ++G G+T+GV+ L +EL+K+KI R
Sbjct: 1 MAALSIQERKRLRQIGHALNPVV---MIGGQGLTEGVIEETNRALNDHELIKVKIAGEDR 57
Query: 83 TCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
G+ V+ L EATG+ V +IG+ V++Y+ +
Sbjct: 58 EARGQ---VIDALIEATGAQAVQKIGKIVLLYKKA 89
>gi|194365243|ref|YP_002027853.1| hypothetical protein Smal_1465 [Stenotrophomonas maltophilia
R551-3]
gi|254522357|ref|ZP_05134412.1| conserved hypothetical protein TIGR00253 [Stenotrophomonas sp.
SKA14]
gi|344206934|ref|YP_004792075.1| RNA-binding, CRM domain-containing protein [Stenotrophomonas
maltophilia JV3]
gi|408824720|ref|ZP_11209610.1| RNA-binding, CRM domain-containing protein [Pseudomonas geniculata
N1]
gi|424668129|ref|ZP_18105154.1| hypothetical protein A1OC_01719 [Stenotrophomonas maltophilia
Ab55555]
gi|194348047|gb|ACF51170.1| protein of unknown function UPF0044 [Stenotrophomonas maltophilia
R551-3]
gi|219719948|gb|EED38473.1| conserved hypothetical protein TIGR00253 [Stenotrophomonas sp.
SKA14]
gi|343778296|gb|AEM50849.1| RNA-binding, CRM domain-containing protein [Stenotrophomonas
maltophilia JV3]
gi|401068391|gb|EJP76915.1| hypothetical protein A1OC_01719 [Stenotrophomonas maltophilia
Ab55555]
Length = 101
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + E LE +EL+K+K+
Sbjct: 5 LTASQTRFLRGQAHDLKALLQT---GGKGVTPAFIAELNEVLERHELVKVKVAAEDRDAR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ ++ EAT SA+V +IG ++YRPS
Sbjct: 62 DVMIGEIVEATESALVQRIGHVAVLYRPS 90
>gi|123440805|ref|YP_001004796.1| hypothetical protein YE0426 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238750118|ref|ZP_04611621.1| Transcription elongation factor GreA [Yersinia rohdei ATCC 43380]
gi|238757568|ref|ZP_04618753.1| Transcription elongation factor GreA [Yersinia aldovae ATCC 35236]
gi|238761760|ref|ZP_04622734.1| Transcription elongation factor GreA [Yersinia kristensenii ATCC
33638]
gi|238783523|ref|ZP_04627545.1| Transcription elongation factor GreA [Yersinia bercovieri ATCC
43970]
gi|238787586|ref|ZP_04631384.1| Transcription elongation factor GreA [Yersinia frederiksenii ATCC
33641]
gi|238793014|ref|ZP_04636643.1| Transcription elongation factor GreA [Yersinia intermedia ATCC
29909]
gi|238797560|ref|ZP_04641057.1| Transcription elongation factor GreA [Yersinia mollaretii ATCC
43969]
gi|332160071|ref|YP_004296648.1| hypothetical protein YE105_C0447 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386311106|ref|YP_006007162.1| RNA binding protein [Yersinia enterocolitica subsp. palearctica
Y11]
gi|418239867|ref|ZP_12866411.1| hypothetical protein IOK_00325 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420260785|ref|ZP_14763455.1| RNA binding protein [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|433551935|ref|ZP_20507975.1| FIG004454: RNA binding protein [Yersinia enterocolitica IP 10393]
gi|122087766|emb|CAL10552.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238699874|gb|EEP92617.1| Transcription elongation factor GreA [Yersinia kristensenii ATCC
33638]
gi|238704330|gb|EEP96862.1| Transcription elongation factor GreA [Yersinia aldovae ATCC 35236]
gi|238711662|gb|EEQ03877.1| Transcription elongation factor GreA [Yersinia rohdei ATCC 43380]
gi|238715578|gb|EEQ07568.1| Transcription elongation factor GreA [Yersinia bercovieri ATCC
43970]
gi|238718557|gb|EEQ10376.1| Transcription elongation factor GreA [Yersinia mollaretii ATCC
43969]
gi|238724373|gb|EEQ16015.1| Transcription elongation factor GreA [Yersinia frederiksenii ATCC
33641]
gi|238727614|gb|EEQ19139.1| Transcription elongation factor GreA [Yersinia intermedia ATCC
29909]
gi|318607369|emb|CBY28867.1| RNA binding protein [Yersinia enterocolitica subsp. palearctica
Y11]
gi|325664301|gb|ADZ40945.1| hypothetical protein YE105_C0447 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862038|emb|CBX72204.1| RNA-binding protein yhbY [Yersinia enterocolitica W22703]
gi|351780693|gb|EHB22758.1| hypothetical protein IOK_00325 [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404511806|gb|EKA25671.1| RNA binding protein [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|431787233|emb|CCO71015.1| FIG004454: RNA binding protein [Yersinia enterocolitica IP 10393]
Length = 97
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTC 84
L K+K+ L S AH L ++G +G+T+GV+ +TLE +EL+K+KI R
Sbjct: 2 NLNNKQKQHLKSLAHPLKP---VVMLGNNGLTEGVLAEIEQTLEHHELIKVKITAEERET 58
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ D + + TG+ V IG +++YRP+
Sbjct: 59 KALIADAIVR---ETGAVNVQIIGNILVLYRPA 88
>gi|418412006|ref|ZP_12985272.1| hypothetical protein HMPREF9281_00876 [Staphylococcus epidermidis
BVS058A4]
gi|410891589|gb|EKS39386.1| hypothetical protein HMPREF9281_00876 [Staphylococcus epidermidis
BVS058A4]
Length = 96
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ ETLE EL+KI I + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPTFQ---IGKGGINENMIQQISETLEKRELIKIHILQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+D+ + + T S +V IG +++Y+ S
Sbjct: 59 KDLAAIVAQQTQSELVQIIGSMIVLYKES 87
>gi|409387281|ref|ZP_11239521.1| RNA binding protein [Lactococcus raffinolactis 4877]
gi|399205588|emb|CCK20436.1| RNA binding protein [Lactococcus raffinolactis 4877]
Length = 102
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L ++ +GK G+T+ + TS + L+A EL+K+ I + ++
Sbjct: 3 LTGKQKRYLRAEAHHLTPIVQ---IGKGGLTNEIKTSIRKALDARELIKVAILQNSDADI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+DV +++EE + VV IG+ +++++ +
Sbjct: 60 QDVAEEIEEMSFD-VVQTIGRILVVFKVA 87
>gi|146313248|ref|YP_001178322.1| RNA-binding protein YhbY [Enterobacter sp. 638]
gi|145320124|gb|ABP62271.1| protein of unknown function UPF0044 [Enterobacter sp. 638]
Length = 110
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ LE +EL+K+KI
Sbjct: 15 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIELALEHHELIKVKIASEDRDS 71
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 72 KTLIVEAIVRETGACNVQVIGKTLVLYRPT 101
>gi|294496376|ref|YP_003542869.1| hypothetical protein Mmah_1729 [Methanohalophilus mahii DSM 5219]
gi|292667375|gb|ADE37224.1| protein of unknown function UPF0044 [Methanohalophilus mahii DSM
5219]
Length = 85
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE-LEDVVKQLEEATGSAVVSQIGQTV 111
+GK G+ D VVT + ++AN L+K+KI ++ PGE ++ + ++L T + ++ G+ +
Sbjct: 22 LGKKGIDDAVVTELKKQIKANHLVKVKILKSFPGESMDSIAEELASLTSTTLIDVRGRAI 81
Query: 112 IIYR 115
++YR
Sbjct: 82 VLYR 85
>gi|85712944|ref|ZP_01043984.1| Predicted RNA-binding protein containing KH domain [Idiomarina
baltica OS145]
gi|85693250|gb|EAQ31208.1| Predicted RNA-binding protein containing KH domain [Idiomarina
baltica OS145]
Length = 98
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 12/100 (12%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+K+ P E
Sbjct: 3 LTNKQKQFLKGEAHPLKPVV---LLGANGLTEGVIAEIEQALEDHELIKVKV----PEED 55
Query: 89 EDVVKQLEEA----TGSAVVSQIGQTVIIYRPSL-TRMKL 123
++ +Q+ A TG+ V IG+T I++RP+ RM+L
Sbjct: 56 RELRQQMMAAIVRETGAEQVQVIGKTQILFRPAKEPRMRL 95
>gi|452122885|ref|YP_007473133.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|451911889|gb|AGF83695.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 97
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRM 121
+V + TG+ V IG+T+++YRP+ R+
Sbjct: 59 KTLIVDAIVRETGACNVQVIGKTLVLYRPTKERI 92
>gi|154500955|ref|ZP_02038993.1| hypothetical protein BACCAP_04641 [Bacteroides capillosus ATCC
29799]
gi|150269979|gb|EDM97498.1| RNA-binding protein, YhbY family [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 109
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ +L S A+S+ + VGK G+ + +V + LEA EL+K K+
Sbjct: 3 LTSKQRAQLRSLANSIDTIVH---VGKDGLGENLVKQADDALEARELIKGKVLENSMLTA 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKESKLKPLL 145
+ ++L AT S VV IG ++YRPS KK + ++ + K+S+ KP++
Sbjct: 60 REAAEELAVATRSEVVQVIGTKFVLYRPS-------HKKDKKDKIVLVKDSRKKPVV 109
>gi|261867706|ref|YP_003255628.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|415767677|ref|ZP_11483334.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
D17P-2]
gi|416053046|ref|ZP_11578657.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
gi|416054394|ref|ZP_11579164.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype e str. SCC393]
gi|416068909|ref|ZP_11582985.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
gi|416107873|ref|ZP_11590792.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype c str. SCC2302]
gi|418465544|ref|ZP_13036479.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
RhAA1]
gi|444345929|ref|ZP_21153928.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
gi|261413038|gb|ACX82409.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|347991346|gb|EGY32822.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
gi|348000536|gb|EGY41316.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
gi|348003558|gb|EGY44140.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype e str. SCC393]
gi|348004910|gb|EGY45402.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype c str. SCC2302]
gi|348658372|gb|EGY75941.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
D17P-2]
gi|359755937|gb|EHK90098.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
RhAA1]
gi|443542241|gb|ELT52596.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
Length = 100
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L ++G +G+T+GV+ +L +EL+K+KI +
Sbjct: 5 LSTKQKQYLKGLAHHLSP---VVMLGGNGLTEGVLAEIDLSLNHHELIKVKISGSDRETK 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + TG+A V IG +++YRPS
Sbjct: 62 QLIIDAIVRETGAAAVQTIGHVLVLYRPS 90
>gi|372489671|ref|YP_005029236.1| putative RNA-binding protein, YhbY family [Dechlorosoma suillum PS]
gi|359356224|gb|AEV27395.1| putative RNA-binding protein, YhbY family [Dechlorosoma suillum PS]
Length = 118
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L +++ L + AHSL + + ++G+++GV+ +L+++EL+K++++ E
Sbjct: 4 LNADQRRALRARAHSLDPVVS---ISQNGLSEGVMKEIDASLKSHELIKVRVYNDNREER 60
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
E ++++ + +A V IG+ ++++RP+L
Sbjct: 61 EQFLQEICQQLDAAPVQHIGKLLVLWRPTL 90
>gi|449515235|ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 1053
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 19/141 (13%)
Query: 16 VKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANEL 75
+ P P +P+L+ KE+ L A + KKL VGKS V GV + E + + L
Sbjct: 915 INQPGYFPANVPQLSNKERLLLRRQALKM-KKLPVLSVGKSNVITGVAKAIKEHFKKHSL 973
Query: 76 LKIKIHRTCPG-ELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVY 134
+ + G ++++V +LE+ATG+ +VSQ VI+YR + E++KQ+A
Sbjct: 974 AIVNVKGRAKGTSVQEIVFKLEQATGAVLVSQEPSKVILYR----GWEEEDRKQKA---- 1025
Query: 135 VRKESKLKPLLLKKAGVSRLS 155
++K +G RLS
Sbjct: 1026 ---------TMMKNSGEDRLS 1037
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 11 EAVEEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQL-VGKSGVTDGVVTSFIET 69
+ V E K R+P L +L++ E+ EL ++G +LK +L VGK+G+T+G+V + E
Sbjct: 165 DGVREKKREERAP-SLAELSLTEE-ELGRL-RTIGIRLKKKLNVGKAGITEGIVNTIHEF 221
Query: 70 LEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR------PSLTRMKL 123
+E++KI C ++ LE TG VV + G +I+YR P + L
Sbjct: 222 WRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVVWRSGSKIILYRGPNYIYPYFSHEIL 281
Query: 124 EEKKQQ 129
E++ Q
Sbjct: 282 EDEGSQ 287
>gi|52425017|ref|YP_088154.1| hypothetical protein MS0962 [Mannheimia succiniciproducens MBEL55E]
gi|52307069|gb|AAU37569.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 134
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L + ++G +G+T+GV+ L +EL+K+KI +
Sbjct: 39 LSTKQKQFLKGLAHHLNPVV---MLGNNGLTEGVLAEIDNALNHHELIKVKIAGSDRETK 95
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + TGS V IG +++YRPS
Sbjct: 96 QLIIDAIIRETGSGAVQTIGHILVLYRPS 124
>gi|328957109|ref|YP_004374495.1| putative RNA-binding protein [Carnobacterium sp. 17-4]
gi|328673433|gb|AEB29479.1| putative RNA-binding protein [Carnobacterium sp. 17-4]
Length = 104
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KLT K+K+ L S AH L + +GK+G+ V+ E LE EL+K+ + +
Sbjct: 2 KLTGKQKRFLRSKAHHLNPIFQ---IGKNGLNKEVIVQINEALEKRELIKVGLLQNTDEV 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
EDV LE+ G V IG+ +++++ S
Sbjct: 59 AEDVAAVLEQEIGCDAVQIIGRVIVLFKKS 88
>gi|417002083|ref|ZP_11941472.1| RNA-binding protein, YhbY family [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479224|gb|EGC82320.1| RNA-binding protein, YhbY family [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 94
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L AH + +GK VTD ++ + E LEA EL+KIKI +
Sbjct: 2 ITGKQRAYLKQEAHDFKPVIN---IGKFSVTDELIKAIDEALEARELIKIKILNNNMDDQ 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++V + E T + +S +G + IYR +
Sbjct: 59 DEIVDTILEKTNAEFISHLGSIITIYRKN 87
>gi|336114441|ref|YP_004569208.1| hypothetical protein BCO26_1763 [Bacillus coagulans 2-6]
gi|335367871|gb|AEH53822.1| protein of unknown function UPF0044 [Bacillus coagulans 2-6]
Length = 96
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + +V E LEA ELLKI + + C +
Sbjct: 2 LTGKQKRFLRAKAHHLSPIFQ---VGKGGVNENMVKQVQEALEARELLKISVLQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ V L E + +V IG T+++Y+ S
Sbjct: 59 DSVAAALAEGAHAELVQIIGNTIVLYKES 87
>gi|121594726|ref|YP_986622.1| hypothetical protein Ajs_2385 [Acidovorax sp. JS42]
gi|222110671|ref|YP_002552935.1| hypothetical protein Dtpsy_1473 [Acidovorax ebreus TPSY]
gi|120606806|gb|ABM42546.1| protein of unknown function UPF0044 [Acidovorax sp. JS42]
gi|221730115|gb|ACM32935.1| protein of unknown function UPF0044 [Acidovorax ebreus TPSY]
Length = 157
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT E++E + AH L + L+G G+T V L+A+ L+K+++
Sbjct: 1 MPQIQLTPAERREHRANAHHLDPVV---LIGGDGLTAAVQKEIDAALKAHGLIKVRVFND 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL--EEKKQQARRVYVRKESK 140
E++ +QL +A +A + IG+ ++++RP + K E++ R V V K SK
Sbjct: 58 DRAAREEMYQQLADALNAAPIQHIGKLLVLWRPIPAKEKAIDEDRMPGPRDVKVLKFSK 116
>gi|39546366|ref|NP_462209.2| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|205354199|ref|YP_002228000.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207858546|ref|YP_002245197.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|378452116|ref|YP_005239476.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378701198|ref|YP_005183156.1| hypothetical protein SL1344_3270 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|379702558|ref|YP_005244286.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|416646716|ref|ZP_11807923.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|417336663|ref|ZP_12119063.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|418488884|ref|ZP_13056278.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418494330|ref|ZP_13060784.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418500495|ref|ZP_13066891.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418505794|ref|ZP_13072140.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418524392|ref|ZP_13090377.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|418818279|ref|ZP_13373758.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418823347|ref|ZP_13378756.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|419729807|ref|ZP_14256763.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419732846|ref|ZP_14259750.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419741335|ref|ZP_14268036.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419742933|ref|ZP_14269602.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419748993|ref|ZP_14275483.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421360878|ref|ZP_15811154.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421361130|ref|ZP_15811396.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421369975|ref|ZP_15820150.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421374419|ref|ZP_15824550.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421378644|ref|ZP_15828723.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421379668|ref|ZP_15829735.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421384667|ref|ZP_15834690.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421389691|ref|ZP_15839674.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421396977|ref|ZP_15846902.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421397835|ref|ZP_15847745.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421405756|ref|ZP_15855581.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421408718|ref|ZP_15858517.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421411319|ref|ZP_15861085.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421417746|ref|ZP_15867456.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421421210|ref|ZP_15870879.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421427441|ref|ZP_15877061.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421431212|ref|ZP_15880798.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421437270|ref|ZP_15886791.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421441502|ref|ZP_15890971.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421442843|ref|ZP_15892288.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421447656|ref|ZP_15897053.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421570380|ref|ZP_16016071.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421574272|ref|ZP_16019897.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421579347|ref|ZP_16024911.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421582646|ref|ZP_16028179.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|422027519|ref|ZP_16373859.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422032561|ref|ZP_16378668.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427554327|ref|ZP_18929160.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427576575|ref|ZP_18935106.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427592729|ref|ZP_18938675.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427623548|ref|ZP_18945048.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427640424|ref|ZP_18948441.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427657543|ref|ZP_18953189.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427659343|ref|ZP_18954910.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427677275|ref|ZP_18962967.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427800593|ref|ZP_18968326.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|436619459|ref|ZP_20514538.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436649012|ref|ZP_20516681.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|436801069|ref|ZP_20524686.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436807197|ref|ZP_20527240.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436818088|ref|ZP_20534721.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436832311|ref|ZP_20536601.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436848129|ref|ZP_20539946.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436860870|ref|ZP_20548054.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436867902|ref|ZP_20553056.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436869598|ref|ZP_20553739.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436877258|ref|ZP_20558383.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436891872|ref|ZP_20566572.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436899222|ref|ZP_20570633.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436902733|ref|ZP_20573197.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436915184|ref|ZP_20580031.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436919883|ref|ZP_20582664.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436925857|ref|ZP_20586210.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436932015|ref|ZP_20589364.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436946227|ref|ZP_20598055.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436955690|ref|ZP_20602565.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436966422|ref|ZP_20607091.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436970357|ref|ZP_20608887.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436979829|ref|ZP_20612974.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436993762|ref|ZP_20618555.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437009370|ref|ZP_20623747.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437022511|ref|ZP_20628460.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437028620|ref|ZP_20630712.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437042733|ref|ZP_20636246.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437050408|ref|ZP_20640553.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437061640|ref|ZP_20647006.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437066556|ref|ZP_20649618.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437072670|ref|ZP_20652587.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437083303|ref|ZP_20659046.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437098045|ref|ZP_20665500.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437102370|ref|ZP_20666504.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437118084|ref|ZP_20670147.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437129788|ref|ZP_20676264.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437141501|ref|ZP_20683185.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437146417|ref|ZP_20686206.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437153603|ref|ZP_20690709.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437158240|ref|ZP_20693162.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437169056|ref|ZP_20699449.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437178558|ref|ZP_20704728.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437181439|ref|ZP_20706553.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437250481|ref|ZP_20715230.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437260144|ref|ZP_20717544.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437272283|ref|ZP_20724169.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437281466|ref|ZP_20728600.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437296748|ref|ZP_20732549.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437316124|ref|ZP_20737812.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437326498|ref|ZP_20740260.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437342025|ref|ZP_20745148.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437365386|ref|ZP_20748724.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437417783|ref|ZP_20754202.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437453438|ref|ZP_20759792.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437463629|ref|ZP_20763311.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437480808|ref|ZP_20768513.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437495468|ref|ZP_20772744.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437504804|ref|ZP_20775286.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437538192|ref|ZP_20781891.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437567352|ref|ZP_20787623.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437580748|ref|ZP_20792151.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437588091|ref|ZP_20793731.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437604828|ref|ZP_20799007.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437619604|ref|ZP_20803756.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437633827|ref|ZP_20806797.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437665633|ref|ZP_20814784.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437675640|ref|ZP_20816793.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437700188|ref|ZP_20823775.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437715676|ref|ZP_20828023.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437732957|ref|ZP_20831960.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437748544|ref|ZP_20833716.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437804352|ref|ZP_20838906.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437823865|ref|ZP_20843666.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|437862454|ref|ZP_20847952.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|438084944|ref|ZP_20858515.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438100195|ref|ZP_20863836.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438114797|ref|ZP_20870303.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438129352|ref|ZP_20873345.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|440763658|ref|ZP_20942695.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440770564|ref|ZP_20949513.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440775091|ref|ZP_20953976.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|445128651|ref|ZP_21380361.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|445141150|ref|ZP_21385263.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445149553|ref|ZP_21389239.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445171352|ref|ZP_21396102.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445179548|ref|ZP_21397985.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445226198|ref|ZP_21403793.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445247780|ref|ZP_21408498.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|445329570|ref|ZP_21413523.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445344948|ref|ZP_21417913.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445356919|ref|ZP_21421937.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|205273980|emb|CAR38986.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206710349|emb|CAR34707.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|267995495|gb|ACY90380.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159847|emb|CBW19366.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|323131657|gb|ADX19087.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|353567142|gb|EHC32422.1| RNA binding protein [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|366062148|gb|EHN26385.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366068101|gb|EHN32249.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366068950|gb|EHN33082.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366069265|gb|EHN33390.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366830873|gb|EHN57740.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372207251|gb|EHP20750.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|381292013|gb|EIC33223.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381296109|gb|EIC37217.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381302198|gb|EIC43244.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381312742|gb|EIC53536.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381312989|gb|EIC53782.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|392786241|gb|EJA42798.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392786691|gb|EJA43247.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|395981445|gb|EJH90667.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395982098|gb|EJH91319.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395993857|gb|EJI02947.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395994543|gb|EJI03619.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|395994979|gb|EJI04044.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396005843|gb|EJI14815.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396009431|gb|EJI18364.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396017250|gb|EJI26116.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396018299|gb|EJI27161.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396021984|gb|EJI30798.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396028133|gb|EJI36895.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396032645|gb|EJI41364.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396042581|gb|EJI51203.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396042852|gb|EJI51472.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396046345|gb|EJI54933.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396050418|gb|EJI58943.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396051796|gb|EJI60311.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396055038|gb|EJI63530.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396063659|gb|EJI72048.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396071900|gb|EJI80216.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396074550|gb|EJI82838.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|402521881|gb|EJW29213.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402524375|gb|EJW31674.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402525773|gb|EJW33059.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402532826|gb|EJW40014.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|414014431|gb|EKS98274.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414015621|gb|EKS99428.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414015832|gb|EKS99623.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414025858|gb|EKT09146.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414027821|gb|EKT11032.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414030321|gb|EKT13426.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414043824|gb|EKT26298.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414044285|gb|EKT26740.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414056828|gb|EKT38612.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414058602|gb|EKT40261.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414063242|gb|EKT44410.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|434941874|gb|ELL48252.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434958448|gb|ELL52000.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434965385|gb|ELL58342.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434968153|gb|ELL60905.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434970632|gb|ELL63193.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434980910|gb|ELL72797.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434985314|gb|ELL77001.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434991005|gb|ELL82533.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434993054|gb|ELL84493.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435002738|gb|ELL93789.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435006001|gb|ELL96921.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435008759|gb|ELL99570.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435012357|gb|ELM03032.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435019163|gb|ELM09607.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435023266|gb|ELM13562.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435029107|gb|ELM19166.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|435029718|gb|ELM19776.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435035799|gb|ELM25644.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435038119|gb|ELM27901.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435044528|gb|ELM34211.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435046066|gb|ELM35692.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435046832|gb|ELM36447.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435058160|gb|ELM47515.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435065439|gb|ELM54545.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435067194|gb|ELM56255.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435068385|gb|ELM57413.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435076448|gb|ELM65231.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435083383|gb|ELM71984.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435084656|gb|ELM73241.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435088124|gb|ELM76581.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435093112|gb|ELM81452.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435097362|gb|ELM85621.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435106689|gb|ELM94706.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435108876|gb|ELM96841.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435110200|gb|ELM98133.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435122995|gb|ELN10499.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435127008|gb|ELN14402.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435127669|gb|ELN15029.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435133661|gb|ELN20819.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435136662|gb|ELN23752.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435141354|gb|ELN28296.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435148784|gb|ELN35498.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435152025|gb|ELN38656.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435152883|gb|ELN39505.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435164181|gb|ELN50280.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435164795|gb|ELN50867.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435166399|gb|ELN52382.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435168994|gb|ELN54804.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435169229|gb|ELN55028.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435179175|gb|ELN64325.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435180600|gb|ELN65708.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435192425|gb|ELN76956.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435193691|gb|ELN78170.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435202418|gb|ELN86272.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435208078|gb|ELN91502.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435208344|gb|ELN91759.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435217984|gb|ELO00391.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435218906|gb|ELO01307.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435226815|gb|ELO08368.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435235092|gb|ELO15945.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435235890|gb|ELO16672.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435239038|gb|ELO19646.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435240999|gb|ELO21389.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435256771|gb|ELO36065.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435258236|gb|ELO37503.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435258884|gb|ELO38144.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435265220|gb|ELO44105.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435274249|gb|ELO52373.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435277453|gb|ELO55402.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435281881|gb|ELO59528.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435284979|gb|ELO62396.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435287354|gb|ELO64557.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435302950|gb|ELO78877.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435306204|gb|ELO81559.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435311983|gb|ELO85998.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435319349|gb|ELO92188.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435325155|gb|ELO97029.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435328621|gb|ELP00087.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435336311|gb|ELP06277.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|436411262|gb|ELP09215.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|436411705|gb|ELP09653.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|436419290|gb|ELP17168.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|444851359|gb|ELX76450.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444854699|gb|ELX79758.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|444857795|gb|ELX82793.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444861407|gb|ELX86286.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444867860|gb|ELX92534.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444872501|gb|ELX96839.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444878920|gb|ELY03032.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444879614|gb|ELY03709.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444886877|gb|ELY10618.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|444890088|gb|ELY13455.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
Length = 97
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + TG+ V IG+T+++YRP+
Sbjct: 59 KTLIVDAIVRETGACNVQVIGKTLVLYRPT 88
>gi|85058347|ref|YP_454049.1| hypothetical protein SG0369 [Sodalis glossinidius str. 'morsitans']
gi|84778867|dbj|BAE73644.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 97
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 11/97 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI----HRT 83
L K+K+ L AHSL ++G +G+T+GV+ + LE +EL+K+KI H+T
Sbjct: 2 NLNNKQKQHLKGLAHSLKP---VVMLGNNGLTEGVLAEIEQALEHHELIKVKIAAEEHKT 58
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
+ +V++ +G++ V IG +++YRP+ R
Sbjct: 59 KTLIADAIVRE----SGASKVQVIGNILVLYRPAAER 91
>gi|239623851|ref|ZP_04666882.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521882|gb|EEQ61748.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 99
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GKS +T + + E LEA EL+KI + + C + + + L E T S VV IG+ ++
Sbjct: 22 IGKSSLTPEITQAVDEALEARELIKITVLKNCLDDGRSIAEVLAERTHSQVVQVIGRKIV 81
Query: 113 IYRPS 117
+YRP+
Sbjct: 82 LYRPA 86
>gi|406999294|gb|EKE16983.1| hypothetical protein ACD_10C00688G0003 [uncultured bacterium]
Length = 128
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
L LP L+ E++EL + AHSL + + +SG+T+ V+ +L+A+EL+KI+++
Sbjct: 8 LMLP-LSSDERRELRARAHSLHPVVS---IAESGLTEAVMKEIETSLKAHELIKIRVYGD 63
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLT 119
E Q+ +A V IG+ +++YRP T
Sbjct: 64 SRENREAYFAQICSELAAAPVQHIGKLLVVYRPGST 99
>gi|225871190|ref|YP_002747137.1| hypothetical protein SEQ_1911 [Streptococcus equi subsp. equi 4047]
gi|225700594|emb|CAW95116.1| conserved hypothetical protein [Streptococcus equi subsp. equi
4047]
Length = 113
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L + AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 2 LTSKQRAFLKAEAHSLKPIVQ---IGKNGLNDQIKTSIRQALDARELIKVTLLQNTDETI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 59 HEVAEILEEEIGCDTVLKIGRILILFKVS 87
>gi|195978786|ref|YP_002124030.1| RNA binding protein [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|225867896|ref|YP_002743844.1| hypothetical protein SZO_02860 [Streptococcus equi subsp.
zooepidemicus]
gi|195975491|gb|ACG63017.1| RNA binding protein [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|225701172|emb|CAW98073.1| conserved hypothetical protein [Streptococcus equi subsp.
zooepidemicus]
Length = 102
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L + AHSL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 2 LTSKQRAFLKAEAHSLKPIVQ---IGKNGLNDQIKTSIRQALDARELIKVTLLQNTDETI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 59 HEVAEILEEEIGCDTVLKIGRILILFKVS 87
>gi|190573710|ref|YP_001971555.1| hypothetical protein Smlt1727 [Stenotrophomonas maltophilia K279a]
gi|190011632|emb|CAQ45251.1| conserved hypothetical protein, possible role in RNA-binding
[Stenotrophomonas maltophilia K279a]
Length = 101
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + E LE +EL+K+K+
Sbjct: 5 LTASQTRFLRGQAHDLKALLQT---GGKGVTPAFIAELNEVLERHELVKVKVAAEDRDAR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ ++ EAT SA+V +IG ++YRPS
Sbjct: 62 DVMIVEIVEATESALVQRIGHVAVLYRPS 90
>gi|432992286|ref|ZP_20180945.1| RNA-binding protein YhbY [Escherichia coli KTE217]
gi|433112418|ref|ZP_20298274.1| RNA-binding protein YhbY [Escherichia coli KTE150]
gi|431492555|gb|ELH72156.1| RNA-binding protein YhbY [Escherichia coli KTE217]
gi|431626288|gb|ELI94840.1| RNA-binding protein YhbY [Escherichia coli KTE150]
Length = 97
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 11/94 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI----HRT 83
L+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI T
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRET 58
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+E +V++ TG+ V IG+T+++YRP+
Sbjct: 59 KTLTVEAIVRE----TGACNVQVIGKTLVLYRPT 88
>gi|339482111|ref|YP_004693897.1| RNA-binding, CRM domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338804256|gb|AEJ00498.1| RNA-binding, CRM domain-containing protein [Nitrosomonas sp.
Is79A3]
Length = 117
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 11/92 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIH---RTCP 85
LTV ++EL + AH+L + ++GK G++ V+ L ++EL+KIK+ R
Sbjct: 4 LTVAHRRELKAQAHALNPVV---MIGKIGLSSNVIEELDRGLSSHELIKIKVQIEDRIVR 60
Query: 86 GEL-EDVVKQLEEATGSAVVSQIGQTVIIYRP 116
L E++ +QL+ +A V IG+ IIYRP
Sbjct: 61 NALFEEICQQLD----AAPVQHIGKIFIIYRP 88
>gi|21466128|pdb|1LN4|A Chain A, Crystal Structure Of E. Coli Yhby
Length = 104
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI
Sbjct: 3 LSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 60 TLIVEAIVRETGACNVQVIGKTLVLYRPT 88
>gi|307719428|ref|YP_003874960.1| hypothetical protein STHERM_c17520 [Spirochaeta thermophila DSM
6192]
gi|306533153|gb|ADN02687.1| hypothetical protein STHERM_c17520 [Spirochaeta thermophila DSM
6192]
Length = 104
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
VGK+G+ +GV + + LE NEL+K++ E ED+ ++L E G+ +V+ IG +
Sbjct: 25 VGKAGLAEGVFRALHDALERNELVKVRF-VAWKDEREDLARELAERLGALLVAVIGHVAV 83
Query: 113 IYRPS 117
YR +
Sbjct: 84 FYREA 88
>gi|23099441|ref|NP_692907.1| hypothetical protein OB1986 [Oceanobacillus iheyensis HTE831]
gi|22777670|dbj|BAC13942.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 96
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+++ L + A+ L + VGK GV D +V E LE EL+K+ + + C +
Sbjct: 2 LTGKQRRFLRAQANQLKPIFQ---VGKDGVNDNMVIQIEEALEKRELIKVSVLQNCMEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
+ V +Q+ + + +V IG +++Y+ S+
Sbjct: 59 DVVAEQISTSANAELVQVIGNNIVLYKESV 88
>gi|355677772|ref|ZP_09060539.1| hypothetical protein HMPREF9469_03576 [Clostridium citroniae
WAL-17108]
gi|354812858|gb|EHE97472.1| hypothetical protein HMPREF9469_03576 [Clostridium citroniae
WAL-17108]
Length = 99
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GKS +T + + E LEA EL+KI + + C + + + L E T S VV IG+ ++
Sbjct: 22 IGKSSLTPEITQAVDEALEARELIKITVLKNCLDDGRSIAEVLAERTHSQVVQVIGRKIV 81
Query: 113 IYRPS 117
+YRP+
Sbjct: 82 LYRPA 86
>gi|152979123|ref|YP_001344752.1| hypothetical protein Asuc_1458 [Actinobacillus succinogenes 130Z]
gi|150840846|gb|ABR74817.1| protein of unknown function UPF0044 [Actinobacillus succinogenes
130Z]
Length = 98
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L AH L ++G +G+T+GV+ L +EL+K+KI
Sbjct: 3 LTTKQKQYLKGLAHHLSP---VVMLGGNGLTEGVLAEIDNALNHHELIKVKIAGADRDTK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T +A V IG +++YRPS
Sbjct: 60 QLIIDAIVRETNAATVQTIGHILVLYRPS 88
>gi|409911800|ref|YP_006890265.1| RNA-binding protein YhbY [Geobacter sulfurreducens KN400]
gi|298505375|gb|ADI84098.1| RNA-binding protein YhbY [Geobacter sulfurreducens KN400]
Length = 98
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L HSL + +GK +++ +V E LE +EL+K+KI +C +
Sbjct: 2 LTGKQKRHLRGLGHSLAPVIT---IGKGEISEALVRETDEALEHHELIKVKILESCLLDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ ++L A G+ V +G+T +++R
Sbjct: 59 HEAAEELASACGADVAQVLGRTFLLFR 85
>gi|226325076|ref|ZP_03800594.1| hypothetical protein COPCOM_02868 [Coprococcus comes ATCC 27758]
gi|225206424|gb|EEG88778.1| RNA-binding protein, YhbY family [Coprococcus comes ATCC 27758]
Length = 96
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A ++ L+ +GKS VT + + E LEA EL+K+ + + C +L
Sbjct: 1 MTSKQRAYLKSLAMTMDPILQ---IGKSSVTPELTAAVAEALEARELIKLHVLQNCGDDL 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + L E T S VV IG+ +++Y+
Sbjct: 58 RGMAEILAERTRSQVVQVIGRKIVLYK 84
>gi|308189105|ref|YP_003933236.1| RNA-binding protein [Pantoea vagans C9-1]
gi|372275464|ref|ZP_09511500.1| RNA-binding protein YhbY [Pantoea sp. SL1_M5]
gi|390437094|ref|ZP_10225632.1| RNA-binding protein YhbY [Pantoea agglomerans IG1]
gi|308059615|gb|ADO11787.1| RNA-binding protein [Pantoea vagans C9-1]
Length = 97
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L ++G +G+T+GV+ + L +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKP---VVMLGGNGLTEGVLAEIEQALSHHELIKVKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ +V+ + TG++ V IG+T+++YRPS
Sbjct: 59 KQLIVEAIVRETGASNVQVIGKTLVLYRPS 88
>gi|39996365|ref|NP_952316.1| RNA-binding protein YhbY [Geobacter sulfurreducens PCA]
gi|39983245|gb|AAR34639.1| RNA-binding protein YhbY [Geobacter sulfurreducens PCA]
Length = 98
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L HSL + +GK +++ +V E LE +EL+K+KI +C +
Sbjct: 2 LTGKQKRHLRGLGHSLAPVIT---IGKGEISEALVKETDEALEHHELIKVKILESCLLDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ ++L A G+ V +G+T +++R
Sbjct: 59 HEAAEELASACGAEVAQVLGRTFLLFR 85
>gi|224476703|ref|YP_002634309.1| hypothetical protein Sca_1217 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421310|emb|CAL28124.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 96
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH + + +GKSG+ D ++ E LE EL+KI I + +
Sbjct: 2 LTGKQKRYLRSQAHHVTPTFQ---IGKSGLNDNMIEQLNEILENRELIKIHILQNNMDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + + + T S +V IG +++Y+ S
Sbjct: 59 KELAEAVSDKTDSELVQIIGSMIVLYKES 87
>gi|456734116|gb|EMF58938.1| RNA binding protein [Stenotrophomonas maltophilia EPM1]
Length = 105
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + E LE +EL+K+K+
Sbjct: 9 LTASQTRFLRGQAHDLKALLQT---GGKGVTPAFIAELNEVLERHELVKVKVAAEDRDAR 65
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ ++ EAT SA+V +IG ++YRPS
Sbjct: 66 DVMIGEIVEATESALVQRIGHVAVLYRPS 94
>gi|325661647|ref|ZP_08150271.1| hypothetical protein HMPREF0490_01005 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331084758|ref|ZP_08333846.1| hypothetical protein HMPREF0987_00149 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325472174|gb|EGC75388.1| hypothetical protein HMPREF0490_01005 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330410852|gb|EGG90274.1| hypothetical protein HMPREF0987_00149 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 96
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A ++ + +GKS +T + + E LEA EL+KI + + C +
Sbjct: 1 MTTKQRAYLKSLAMTMDPIFQ---IGKSSMTPALTEAISEALEARELIKISVLKNCADDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++ + + E T + VV IG+ +++YR
Sbjct: 58 KELAQLIAERTRAQVVQVIGKKIVLYR 84
>gi|406888285|gb|EKD34815.1| hypothetical protein ACD_75C02178G0007 [uncultured bacterium]
Length = 115
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 10/116 (8%)
Query: 25 PLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTC 84
P LT ++K+ L AH L ++ +GK G++ G+V + L +EL+K+KI
Sbjct: 8 PASILTTRQKQFLKGLAHPLSPLVQ---IGKEGMSQGIVNTINAELLNHELIKVKIGNNS 64
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKESK 140
E ++ E TGS +V IG+T ++Y+ + +K + +R+ + K+SK
Sbjct: 65 GLEKHTTSQEAAELTGSILVQLIGKTFVLYKSN-------PEKPKDKRIILPKKSK 113
>gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera]
Length = 1028
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 14 EEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEAN 73
E+ ++P+ + L LP+ +E + L + KKLK VGK+G+T+G+V E
Sbjct: 174 EDERAPTLAELTLPE---EELRRLKGIGIQIRKKLK---VGKAGITEGIVNGIHERWRRA 227
Query: 74 ELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
E++KI+ C ++ LE TG V+ + G +I+YR
Sbjct: 228 EVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSGSYIILYR 269
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPG-ELEDVVKQLEEATGSAVVSQIGQTV 111
VG+S + GV + + + L + + G +++V+ +LE+ATG+ +VSQ V
Sbjct: 922 VGRSNIVTGVAKTIKAHFQKHPLAIVNVKGRAKGTSVQEVIFKLEQATGAVLVSQEPSKV 981
Query: 112 IIYR 115
I+YR
Sbjct: 982 ILYR 985
>gi|163857846|ref|YP_001632144.1| hypothetical protein Bpet3533 [Bordetella petrii DSM 12804]
gi|163261574|emb|CAP43876.1| conserved hypothetical protein [Bordetella petrii]
Length = 203
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P+ +LT +E+ +L S AH L L+G +G+TD V+ L ++ L+K++ +
Sbjct: 1 MPILELTSRERSDLRSAAHPL---RPVVLIGDNGLTDAVLKEIDRALASHGLIKVRAGGS 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E E ++ + +A A V +G+ +I++RP
Sbjct: 58 DRDEREAMLASICDALSCAPVHHLGKMLILFRP 90
>gi|450137693|ref|ZP_21871777.1| RNA-binding protein [Streptococcus mutans NLML1]
gi|449234971|gb|EMC33953.1| RNA-binding protein [Streptococcus mutans NLML1]
Length = 102
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL ++ +GK+G+ D + T L+A EL+K+ + + ++
Sbjct: 2 LTSKQRAFLKSEAHSLKPIVQ---IGKNGLNDQIKTGVRNALDARELIKVTLLQNTDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HEVAEILEDEIGLETVLKIGRILILYKES 87
>gi|416891891|ref|ZP_11923438.1| 23S rRNA methyltransferase J [Aggregatibacter aphrophilus ATCC
33389]
gi|347815439|gb|EGY32079.1| 23S rRNA methyltransferase J [Aggregatibacter aphrophilus ATCC
33389]
Length = 100
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L ++G +G+T+GV+ +L +EL+K+KI +
Sbjct: 5 LSTKQKQYLKGLAHHLSP---VVMLGSNGLTEGVLAEIDLSLSHHELIKVKISGSDRETK 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
+ ++ + TG+A V IG +++YRPS EE K Q R
Sbjct: 62 QLIINAIVRETGAAEVQTIGHVLVLYRPS------EENKIQLPR 99
>gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa]
gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 15 EVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANE 74
E K PS + L LP +E + L + + +KLK VGK+G+T+G+V E +E
Sbjct: 151 EAKVPSLAELSLPN---EELRRLRTIGIAEKRKLK---VGKAGITEGIVNGIHERWRRSE 204
Query: 75 LLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
++KI C ++ LE TG VV ++G +++YR
Sbjct: 205 VVKIVCEDLCRMNMKRTHDLLERKTGGLVVWRVGSKIVLYR 245
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPG-ELEDVVKQLEEATGSAVVSQIGQTV 111
VG+S + GV + + + + + G +++VV +LEEATG+ +VSQ V
Sbjct: 890 VGRSNIVTGVAKTIKAHFQRHPFAIVHVKGRAKGTSVQEVVSKLEEATGAVLVSQEPSKV 949
Query: 112 IIYR 115
I+YR
Sbjct: 950 ILYR 953
>gi|319786407|ref|YP_004145882.1| hypothetical protein Psesu_0798 [Pseudoxanthomonas suwonensis 11-1]
gi|317464919|gb|ADV26651.1| protein of unknown function UPF0044 [Pseudoxanthomonas suwonensis
11-1]
Length = 101
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L ++ VG G+T +V + LE +EL+K+K+
Sbjct: 5 LTSAQNRFLRGQAHGLKALMQ---VGGKGITPALVAELDQVLERHELVKVKVGAEDREAR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ L TG+A+V +IG T +YRPS
Sbjct: 62 DAMIDALASQTGAALVQRIGHTATLYRPS 90
>gi|312134966|ref|YP_004002304.1| hypothetical protein Calow_0938 [Caldicellulosiruptor owensensis
OL]
gi|311775017|gb|ADQ04504.1| protein of unknown function UPF0044 [Caldicellulosiruptor
owensensis OL]
Length = 95
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S A+++ ++ +GK G+T+ V+ E L A EL+KI + + C E
Sbjct: 2 LTSKQRARLRSMANTMDAIVR---IGKEGITERVLKQIDEALSARELIKIALEKNCEIEP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + + E + V IG+ ++IYR S
Sbjct: 59 KQAIAHICEKLNAEPVQVIGRKIVIYRMS 87
>gi|304396339|ref|ZP_07378220.1| protein of unknown function UPF0044 [Pantoea sp. aB]
gi|304355848|gb|EFM20214.1| protein of unknown function UPF0044 [Pantoea sp. aB]
Length = 97
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L ++G +G+T+GV+ + L +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKP---VVMLGGNGLTEGVLAEIEQALAHHELIKVKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ +V+ + TG++ V IG+T+++YRPS
Sbjct: 59 KQLIVEAIVRETGASNVQVIGKTLVLYRPS 88
>gi|225568002|ref|ZP_03777027.1| hypothetical protein CLOHYLEM_04075 [Clostridium hylemonae DSM
15053]
gi|225163176|gb|EEG75795.1| hypothetical protein CLOHYLEM_04075 [Clostridium hylemonae DSM
15053]
Length = 96
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A ++ + VGK+ +T V + E L A EL+K+ + + C +
Sbjct: 1 MTTKQRAYLKSLAMTMDPVFQ---VGKNSITPEVTEAVREALAARELIKVAVLKNCADDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++ + L E T S VV IG+ +++YR
Sbjct: 58 KEIAQLLAERTQSQVVQVIGKKIVLYR 84
>gi|422415990|ref|ZP_16492947.1| probable RNA-binding protein YqeI, partial [Listeria innocua FSL
J1-023]
gi|313623719|gb|EFR93866.1| probable RNA-binding protein YqeI [Listeria innocua FSL J1-023]
Length = 91
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 34 KKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVK 93
K+ L AH++ + VGK V+ ++ E LEA EL+KI I + C + + V +
Sbjct: 2 KRFLRKEAHTIQPIFQ---VGKGSVSPNLIIQVKEALEARELIKISILQNCEEDKQTVAE 58
Query: 94 QLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
++ G+ +V IG+T+I+Y+ S+ + ++
Sbjct: 59 KISTRAGADIVQVIGRTIILYKQSVNKQQI 88
>gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1044
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 14 EEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEAN 73
E+ ++P+ + L LP+ +E + L + KKLK VGK+G+T+G+V E
Sbjct: 174 EDERAPTLAELTLPE---EELRRLKGIGIQIRKKLK---VGKAGITEGIVNGIHERWRRA 227
Query: 74 ELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
E++KI+ C ++ LE TG V+ + G +I+YR
Sbjct: 228 EVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSGSYIILYR 269
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPG-ELEDVVKQLEEATGSAVVSQIGQTV 111
VG+S + GV + + + L + + G +++V+ +LE+ATG+ +VSQ V
Sbjct: 922 VGRSNIVTGVAKTIKAHFQKHPLAIVNVKGRAKGTSVQEVIFKLEQATGAVLVSQEPSKV 981
Query: 112 IIYR 115
I+YR
Sbjct: 982 ILYR 985
>gi|196230477|ref|ZP_03129339.1| protein of unknown function UPF0044 [Chthoniobacter flavus
Ellin428]
gi|196225407|gb|EDY19915.1| protein of unknown function UPF0044 [Chthoniobacter flavus
Ellin428]
Length = 92
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT EK++L + A L +K +G G++D + S E L + L+K+K E
Sbjct: 5 LTNAEKRDLKAQAQRLEPVVK---LGHGGMSDAFIHSLDEALNQHGLVKMKF-ADFKEEK 60
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+ + Q+ E TGSA+V Q+G + YRP
Sbjct: 61 KTLAPQIAERTGSAIVMQVGNVAVFYRP 88
>gi|332283362|ref|YP_004415273.1| hypothetical protein PT7_0109 [Pusillimonas sp. T7-7]
gi|330427315|gb|AEC18649.1| hypothetical protein PT7_0109 [Pusillimonas sp. T7-7]
Length = 190
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 26 LPKL--TVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+PKL T +E+ L + AH L + L+G G++D V+ L A++L+K++I
Sbjct: 1 MPKLEITSQERSALRAAAHPLRPVV---LIGDRGLSDSVLKEIDLNLNAHQLIKVRI--- 54
Query: 84 CPGELED----VVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKES 139
GE + +++ + E+ A+V +G+T+IIYRP + K + + + A R +
Sbjct: 55 -AGEEREARNAMLETICESLSCALVHHLGKTLIIYRPDVAAQKAKAEAENATRAIRKPSE 113
Query: 140 KLKPLLLKKAGVSR 153
P L GV+R
Sbjct: 114 PHTPKKLAAEGVTR 127
>gi|381405891|ref|ZP_09930575.1| RNA-binding protein YhbY [Pantoea sp. Sc1]
gi|380739090|gb|EIC00154.1| RNA-binding protein YhbY [Pantoea sp. Sc1]
Length = 97
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L ++G +G+T+GV+ + L +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKP---VVMLGGNGLTEGVLAEIEQALSHHELIKVKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ +V + TG++ V IG+T+++YRPS
Sbjct: 59 KQLIVDAIVRETGASNVQVIGKTLVLYRPS 88
>gi|154482897|ref|ZP_02025345.1| hypothetical protein EUBVEN_00594 [Eubacterium ventriosum ATCC
27560]
gi|149736181|gb|EDM52067.1| RNA-binding protein, YhbY family [Eubacterium ventriosum ATCC
27560]
Length = 97
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
VGKS VT + + E LE EL+K+ + + C + + + L + T S+VV IG+ ++
Sbjct: 22 VGKSSVTPELTAAIDEALEKRELIKLSVLKNCFDDPRSIAEVLADRTHSSVVHVIGRKIV 81
Query: 113 IYRPS 117
+YRP+
Sbjct: 82 LYRPA 86
>gi|212710000|ref|ZP_03318128.1| hypothetical protein PROVALCAL_01051 [Providencia alcalifaciens DSM
30120]
gi|422019148|ref|ZP_16365698.1| RNA binding protein [Providencia alcalifaciens Dmel2]
gi|212687409|gb|EEB46937.1| hypothetical protein PROVALCAL_01051 [Providencia alcalifaciens DSM
30120]
gi|414103690|gb|EKT65264.1| RNA binding protein [Providencia alcalifaciens Dmel2]
Length = 97
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L K+ + L S AH L ++G +G+T+GV+ +L +EL+K+KI GE
Sbjct: 2 NLNKKQIQHLKSLAHHLNP---VVMIGNNGLTEGVLAEIEVSLAHHELIKVKI----AGE 54
Query: 88 LEDVVKQLEEA----TGSAVVSQIGQTVIIYRPSLTR 120
+ + EA TG+A V IG+ +++YRPS+ R
Sbjct: 55 DRETKNLIAEAIVRETGAANVQVIGKILVLYRPSVER 91
>gi|417647007|ref|ZP_12296856.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU144]
gi|329725356|gb|EGG61839.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU144]
Length = 98
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ ET+E EL+KI I + +
Sbjct: 3 LTGKQKRYLRSLAHNIDPTFQ---IGKGGINENMIQQISETIEKRELIKIHILQNNFDDK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+D+ + + T S +V IG +++Y+ S
Sbjct: 60 KDLAAIVSQQTQSELVQIIGSMIVLYKES 88
>gi|125972688|ref|YP_001036598.1| hypothetical protein Cthe_0164 [Clostridium thermocellum ATCC
27405]
gi|256004846|ref|ZP_05429820.1| protein of unknown function UPF0044 [Clostridium thermocellum DSM
2360]
gi|281416875|ref|ZP_06247895.1| protein of unknown function UPF0044 [Clostridium thermocellum JW20]
gi|385779396|ref|YP_005688561.1| hypothetical protein Clo1313_2069 [Clostridium thermocellum DSM
1313]
gi|419722582|ref|ZP_14249722.1| RNA-binding, CRM domain-containing protein [Clostridium
thermocellum AD2]
gi|419725539|ref|ZP_14252580.1| RNA-binding, CRM domain-containing protein [Clostridium
thermocellum YS]
gi|125712913|gb|ABN51405.1| protein of unknown function UPF0044 [Clostridium thermocellum ATCC
27405]
gi|255991156|gb|EEU01264.1| protein of unknown function UPF0044 [Clostridium thermocellum DSM
2360]
gi|281408277|gb|EFB38535.1| protein of unknown function UPF0044 [Clostridium thermocellum JW20]
gi|316941076|gb|ADU75110.1| protein of unknown function UPF0044 [Clostridium thermocellum DSM
1313]
gi|380771109|gb|EIC04988.1| RNA-binding, CRM domain-containing protein [Clostridium
thermocellum YS]
gi|380781349|gb|EIC11007.1| RNA-binding, CRM domain-containing protein [Clostridium
thermocellum AD2]
Length = 96
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S A+S+ + +GK G+ D ++ F E LEA EL+K+ + + +
Sbjct: 2 LTGKQRSYLRSLANSIEPIFQ---IGKGGINDNMIKQFNEALEARELIKVAVLKNAMVDT 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++V ++ G+ VV IG ++Y+ S
Sbjct: 59 KEVCHEVASLVGAEVVQVIGNKFVLYKES 87
>gi|406670356|ref|ZP_11077608.1| hypothetical protein HMPREF9707_01511 [Facklamia ignava CCUG 37419]
gi|405579663|gb|EKB53758.1| hypothetical protein HMPREF9707_01511 [Facklamia ignava CCUG 37419]
Length = 102
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+G+T+ + LE EL+K I + EL+DV ++ G+ ++ IG T I
Sbjct: 22 LGKNGLTEEFIHQIDLALEKRELIKFHILQNSDEELKDVTSEIANQLGAEIIQVIGSTAI 81
Query: 113 IYRPS 117
+YRP+
Sbjct: 82 LYRPA 86
>gi|422343661|ref|ZP_16424588.1| hypothetical protein HMPREF9432_00648 [Selenomonas noxia F0398]
gi|355378077|gb|EHG25268.1| hypothetical protein HMPREF9432_00648 [Selenomonas noxia F0398]
Length = 99
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
++GK GVT VV S E ++ EL+K+++ + P E ED + L E + +V IG+
Sbjct: 26 MIGKEGVTPAVVASAREAIKKRELIKVRVLQNAPDEPEDAITVLAERADANLVQVIGRNG 85
Query: 112 IIYRPSLTRMKLE 124
+++R + + ++E
Sbjct: 86 LLFRRNFDKPRIE 98
>gi|420262360|ref|ZP_14765001.1| rna-binding protein [Enterococcus sp. C1]
gi|394770117|gb|EJF49921.1| rna-binding protein [Enterococcus sp. C1]
Length = 103
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L S AH L + +GK G+ D +V+ E LE EL+K+ + + ++
Sbjct: 6 KQKRFLRSEAHHLNPIFQ---IGKGGLNDAMVSQIEEALEKRELIKVSLLQNTDEVADEA 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + E G VV IG+ +++++PS
Sbjct: 63 AETIREKVGCEVVQIIGRVIVLFKPS 88
>gi|261400136|ref|ZP_05986261.1| CRS1 / YhbY domain protein [Neisseria lactamica ATCC 23970]
gi|269210131|gb|EEZ76586.1| CRS1 / YhbY domain protein [Neisseria lactamica ATCC 23970]
Length = 94
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KLT KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLTTKEILELKARAHHLNPVV---MVGQQGLTDSVIRETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + ++ IG+ ++++R ++
Sbjct: 62 RVEICNALCEAVDAQLIQHIGKLLVLWRKNI 92
>gi|58582574|ref|YP_201590.1| hypothetical protein XOO2951 [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84624460|ref|YP_451832.1| hypothetical protein XOO_2803 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|58427168|gb|AAW76205.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84368400|dbj|BAE69558.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 101
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + + LE +EL+K+K+
Sbjct: 5 LTSAQNRFLRGQAHDLKALLQT---GGKGVTPAFLAELEDVLERHELIKVKVASEDRETR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ +L E TGSA+V +IG I+YRP
Sbjct: 62 DALIAELIEQTGSALVQRIGHVAILYRPG 90
>gi|384084056|ref|ZP_09995231.1| hypothetical protein AthiA1_00900 [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 97
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K+++ L AH+L + ++G GVTD ++ L+A+EL+K+++ +
Sbjct: 2 LDAKQRQNLRGQAHTLKPVV---MIGAQGVTDALLAELEIALDAHELIKVRLPQVEHALR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+ ++ +L A+ + +V +IG+ I+YRP
Sbjct: 59 DAMITRLVSASHAEIVGRIGRIAILYRP 86
>gi|147852955|emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
Length = 1399
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 14 EEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEAN 73
E+ ++P+ + L LP+ +E + L + KKLK VGK+G+T+G+V E
Sbjct: 366 EDERAPTLAELTLPE---EELRRLKGIGIQIRKKLK---VGKAGITEGIVNGIHERWRRA 419
Query: 74 ELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
E++KI+ C ++ LE TG V+ + G +I+YR
Sbjct: 420 EVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSGSYIILYR 461
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPG-ELEDVVKQLEEATGSAVVSQIGQTV 111
VG+S + GV + + + L + + G +++VV +LE+ATG+ +VSQ V
Sbjct: 1277 VGRSNIVTGVAKTIKAHFQKHPLAIVNVKGRAKGTSVQEVVFKLEQATGAVLVSQEPSKV 1336
Query: 112 IIYR 115
I+YR
Sbjct: 1337 ILYR 1340
>gi|121534074|ref|ZP_01665899.1| protein of unknown function UPF0044 [Thermosinus carboxydivorans
Nor1]
gi|121307177|gb|EAX48094.1| protein of unknown function UPF0044 [Thermosinus carboxydivorans
Nor1]
Length = 96
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+GV V S + L A EL+K+++ R CP E + + L A G+ VV IG+ +
Sbjct: 23 IGKAGVVGSVAASTEQALLARELVKVRVLRNCPQEPVEAIAALATAVGAEVVQVIGRNGL 82
Query: 113 IYRPSLTRMKLE 124
+Y+ + + K+E
Sbjct: 83 LYKRNPEKSKIE 94
>gi|420206087|ref|ZP_14711597.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM008]
gi|394277926|gb|EJE22243.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM008]
Length = 97
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ ET+E EL+KI I + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPTFQ---IGKGGINENMIQQISETIEKRELIKIHILQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+D+ + + T S +V IG +++Y+ S
Sbjct: 59 KDLAAIVSQQTQSELVQIIGSMIVLYKES 87
>gi|261345169|ref|ZP_05972813.1| RNA-binding protein YhbY [Providencia rustigianii DSM 4541]
gi|282566861|gb|EFB72396.1| RNA-binding protein YhbY [Providencia rustigianii DSM 4541]
Length = 97
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L K+ + L S AH L ++G +G+T+GV+ +L +EL+K+KI GE
Sbjct: 2 NLNKKQIQHLKSLAHHLNP---VVMIGNNGLTEGVLAEIELSLTHHELIKVKI----AGE 54
Query: 88 LEDVVKQLEEA----TGSAVVSQIGQTVIIYRPSLTR 120
D + +A TG+A V IG+ +++YRPS R
Sbjct: 55 DRDTKNLIADAIVRETGAANVQVIGKILVLYRPSAER 91
>gi|291544317|emb|CBL17426.1| conserved hypothetical protein TIGR00253 [Ruminococcus
champanellensis 18P13]
Length = 96
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L A+S+ + VGK G++D +V + L A EL+K+++
Sbjct: 2 LTSKQRAVLRGMANSMDTIFQ---VGKGGISDTLVAQTDDALRARELIKLRVLENSGYTA 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ +QL E TGS VV IG ++YR
Sbjct: 59 REAAEQLAEQTGSDVVQVIGSRFVLYR 85
>gi|242240757|ref|YP_002988938.1| hypothetical protein Dd703_3354 [Dickeya dadantii Ech703]
gi|242132814|gb|ACS87116.1| protein of unknown function UPF0044 [Dickeya dadantii Ech703]
Length = 97
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 9/96 (9%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTC 84
L+ K+K+ L AH L ++G +G+T+GV+ + LE +EL+K+KI R
Sbjct: 2 NLSNKQKQHLKGLAHPLKP---VVMLGNNGLTEGVLAEIEQALEHHELIKVKIAAEDRET 58
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
G + D + L E TG++ V IG T+++YR S R
Sbjct: 59 KGLIIDAI--LRE-TGASNVQVIGHTLVLYRASTDR 91
>gi|383755152|ref|YP_005434055.1| hypothetical protein SELR_23240 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381367204|dbj|BAL84032.1| hypothetical protein SELR_23240 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 100
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 39 SYAHSLGKKLK-CQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
S+ S+G+KL+ ++GK GVT VV + E ++ EL+K+++ + C E ED + L E
Sbjct: 12 SFLRSMGQKLEPVVMMGKEGVTPTVVEAAREAIKKRELIKVRVLQNCMEEPEDAITMLAE 71
Query: 98 ATGSAVVSQIGQTVIIYRPSLTRMKLE 124
+V IG+ ++++ + + K+E
Sbjct: 72 RADVNLVQIIGRNGLLFKRNYDKPKIE 98
>gi|339443333|ref|YP_004709338.1| hypothetical protein CXIVA_22690 [Clostridium sp. SY8519]
gi|338902734|dbj|BAK48236.1| hypothetical protein CXIVA_22690 [Clostridium sp. SY8519]
Length = 97
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A +L + +GKS +T +VT+ E +EL+KI + + C +
Sbjct: 1 MTSKQRAYLRSLAMNLTPLFQ---IGKSSLTPELVTAVTEGFHTHELIKITVLKNCMEDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+ + L T S VV IG+ +I+YRP
Sbjct: 58 RKIAEMLAGRTRSEVVQVIGRKIILYRP 85
>gi|269137755|ref|YP_003294455.1| RNA-binding protein YhbY [Edwardsiella tarda EIB202]
gi|387866499|ref|YP_005697968.1| RNA binding protein [Edwardsiella tarda FL6-60]
gi|267983415|gb|ACY83244.1| RNA-binding protein YhbY [Edwardsiella tarda EIB202]
gi|304557812|gb|ADM40476.1| RNA binding protein [Edwardsiella tarda FL6-60]
Length = 97
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ L S AHSL ++ +G +G+T+GV+ + L +EL+K+KI E
Sbjct: 2 NLTNKQKQHLKSLAHSLKPVVQ---LGANGLTEGVLAEIEQALAHHELIKVKI---AAEE 55
Query: 88 LED---VVKQLEEATGSAVVSQIGQTVIIYRPS 117
E + + TG+ V IG ++IYRPS
Sbjct: 56 RETKTLIANAIVRETGACNVQLIGNILVIYRPS 88
>gi|313890837|ref|ZP_07824461.1| RNA-binding protein, YhbY family [Streptococcus pseudoporcinus SPIN
20026]
gi|416851428|ref|ZP_11908573.1| RNA-binding protein, YhbY family [Streptococcus pseudoporcinus LQ
940-04]
gi|313120735|gb|EFR43850.1| RNA-binding protein, YhbY family [Streptococcus pseudoporcinus SPIN
20026]
gi|356738917|gb|EHI64149.1| RNA-binding protein, YhbY family [Streptococcus pseudoporcinus LQ
940-04]
Length = 102
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L + AH L ++ +GK+G+ + + TS L+A EL+K+ + + +
Sbjct: 2 LTSKQRAFLKAEAHHLKPIVQ---IGKNGLNNQIKTSVRHALDARELIKVTLLQNTDENI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV + LE+ G V +IG+ +I+Y+ S
Sbjct: 59 HDVAETLEDEIGCETVLKIGRILILYKVS 87
>gi|325263957|ref|ZP_08130690.1| putative RNA-binding protein YqeI [Clostridium sp. D5]
gi|324030995|gb|EGB92277.1| putative RNA-binding protein YqeI [Clostridium sp. D5]
Length = 96
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A ++ + +GKS +T G+ + E LEA EL+KI + + C +
Sbjct: 1 MTTKQRAYLKSLAMTMDPIFQ---IGKSSITPGLTEAISEALEARELIKISVLQNCADDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ + + T S VV IG+ +++YR
Sbjct: 58 RELAELVAGRTRSQVVQVIGKKIVLYR 84
>gi|418325511|ref|ZP_12936717.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU071]
gi|420184567|ref|ZP_14690676.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM040]
gi|365228113|gb|EHM69298.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
VCU071]
gi|394257218|gb|EJE02140.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIHLM040]
Length = 96
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK G+ + ++ ETL+ EL+KI I + +
Sbjct: 2 LTGKQKRYLRSLAHNIDPTFQ---IGKGGINENMIQQISETLQKRELIKIHILQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+D+ + + T S +V IG +++Y+ S
Sbjct: 59 KDLAAIVSQQTQSELVQIIGSMIVLYKES 87
>gi|319763184|ref|YP_004127121.1| hypothetical protein Alide_2500 [Alicycliphilus denitrificans BC]
gi|330825247|ref|YP_004388550.1| hypothetical protein Alide2_2677 [Alicycliphilus denitrificans
K601]
gi|317117745|gb|ADV00234.1| protein of unknown function UPF0044 [Alicycliphilus denitrificans
BC]
gi|329310619|gb|AEB85034.1| protein of unknown function UPF0044 [Alicycliphilus denitrificans
K601]
Length = 156
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT E++E + AH L + L+G G+T V L A+ L+K+++
Sbjct: 1 MPQIQLTPAERREHRANAHHLDPVV---LIGGDGLTPAVQKEVDAALAAHGLIKVRVFND 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL--EEKKQQARRVYVRK 137
E + +QL G+A + IG+ ++++RP + K E++K R V V K
Sbjct: 58 DRAAREAMYQQLAHDLGAAPIQHIGKLLVLWRPVAQKQKAADEDRKPGPRDVKVLK 113
>gi|422350577|ref|ZP_16431461.1| hypothetical protein HMPREF9465_02351 [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657180|gb|EKB30083.1| hypothetical protein HMPREF9465_02351 [Sutterella wadsworthensis
2_1_59BFAA]
Length = 176
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 37 LASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLE 96
L S AH L L+G +G+T+ V+ L +EL+K+++ ELE + ++
Sbjct: 14 LRSQAHHLDP---VVLLGANGLTNAVLHEIDRALNDHELIKVRVPSDDREELESIYAEVA 70
Query: 97 EATGSAVVSQIGQTVIIYRPS 117
E G+A V IG+ +I +RP+
Sbjct: 71 EKLGAARVQMIGKLLIFWRPA 91
>gi|325982669|ref|YP_004295071.1| hypothetical protein NAL212_2076 [Nitrosomonas sp. AL212]
gi|325532188|gb|ADZ26909.1| protein of unknown function UPF0044 [Nitrosomonas sp. AL212]
Length = 117
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTCP 85
LT+ ++ L + AH+L + ++GKSG++ V+ L ++EL+KI++ R
Sbjct: 4 LTIAHRRALKAQAHALNPVV---MIGKSGLSPSVIEELDRGLSSHELIKIRVLIDDRIVR 60
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQAR 131
EL + + QL A A V IG+ IIYRP E +KQQ R
Sbjct: 61 NELFEKICQLLNA---APVQHIGKVFIIYRPRPE----EAEKQQER 99
>gi|379011855|ref|YP_005269667.1| putative RNA-binding protein [Acetobacterium woodii DSM 1030]
gi|375302644|gb|AFA48778.1| putative RNA-binding protein [Acetobacterium woodii DSM 1030]
Length = 106
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
+GK G+T V+ + + A EL+K K+ +++DV + L AT S +V IG
Sbjct: 8 FIGKDGLTPQVIVQTKDAIIARELIKGKVQNNSLEDVKDVAQALAAATKSDIVCTIGNKF 67
Query: 112 IIYRPSLTRMKLEEKKQQARRVYVRKESKLKPL 144
++Y+ +L + K+E + + + K+ L PL
Sbjct: 68 VLYKKNLLKTKIEVPTKNQKPIKRVKKKALNPL 100
>gi|407790497|ref|ZP_11137591.1| hypothetical protein B3C1_09418 [Gallaecimonas xiamenensis 3-C-1]
gi|407204045|gb|EKE74027.1| hypothetical protein B3C1_09418 [Gallaecimonas xiamenensis 3-C-1]
Length = 97
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+LT K+++ L + AH L L+G +G+T+GV+ LE +EL+K+K T E
Sbjct: 2 ELTPKQRQHLKALAHPLKP---VVLLGANGLTEGVLAEIELALEHHELIKVKA-PTKDRE 57
Query: 88 LED-VVKQLEEATGSAVVSQIGQTVIIYRPS 117
L+D + + + + T + V +IG +++YRP+
Sbjct: 58 LKDAIFETIAQQTNATKVQKIGHMLVLYRPA 88
>gi|387121881|ref|YP_006287764.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|415763945|ref|ZP_11482252.1| possible RNA-binding protein [Aggregatibacter actinomycetemcomitans
D17P-3]
gi|416043992|ref|ZP_11574850.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
gi|429733885|ref|ZP_19267937.1| RNA-binding protein, YhbY family [Aggregatibacter
actinomycetemcomitans Y4]
gi|347996688|gb|EGY37747.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
gi|348654412|gb|EGY70036.1| possible RNA-binding protein [Aggregatibacter actinomycetemcomitans
D17P-3]
gi|385876373|gb|AFI87932.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|429154065|gb|EKX96819.1| RNA-binding protein, YhbY family [Aggregatibacter
actinomycetemcomitans Y4]
Length = 100
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K+K+ L AH L ++G +G+T+GV+ +L +EL+K+KI +
Sbjct: 5 LLTKQKQYLKGLAHHLSP---VVMLGGNGLTEGVLAEIDLSLNHHELIKVKISGSDRETK 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + TG+A V IG +++YRPS
Sbjct: 62 QLIIDAIVRETGAAAVQTIGHVLVLYRPS 90
>gi|238918416|ref|YP_002931930.1| conserved hypothetical protein TIGR00253 [Edwardsiella ictaluri
93-146]
gi|238867984|gb|ACR67695.1| conserved hypothetical protein TIGR00253 [Edwardsiella ictaluri
93-146]
Length = 97
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 11/94 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ L S AHSL K QL G +G+T+GV+ + L +EL+K++I E
Sbjct: 2 NLTNKQKQHLKSLAHSL--KPVVQL-GANGLTEGVLAEIEQALAHHELIKVRI----AAE 54
Query: 88 LED----VVKQLEEATGSAVVSQIGQTVIIYRPS 117
D + + TG+ V IG ++IYRPS
Sbjct: 55 ERDTKTLIANAIVRETGAYNVQLIGNILVIYRPS 88
>gi|188575910|ref|YP_001912839.1| hypothetical protein PXO_00160 [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188520362|gb|ACD58307.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 101
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + + LE +EL+K+K+
Sbjct: 5 LTSAQNRFLRGQAHDLKALLQT---GGKGVTPAFLAELEDVLERHELIKVKLASEDRETR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ +L E TGSA+V +IG I+YRP
Sbjct: 62 DALIAELIEQTGSALVQRIGHVAILYRPG 90
>gi|291550376|emb|CBL26638.1| conserved hypothetical protein TIGR00253 [Ruminococcus torques
L2-14]
Length = 97
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L A ++ + VGK+ + G+ + E LEA EL+KI + + C +
Sbjct: 1 MTTKQRAYLKGLAMTMDPIFQ---VGKASMNPGLTEAIAEALEARELIKISVLKNCMDDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ + L E T S VV IG+ +++Y+
Sbjct: 58 REIAETLAERTQSQVVQVIGKKIVLYK 84
>gi|336421647|ref|ZP_08601803.1| hypothetical protein HMPREF0993_01180 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336000118|gb|EGN30271.1| hypothetical protein HMPREF0993_01180 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 96
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A ++ + +GK+ +T + + E L+A EL+KI + + C +
Sbjct: 1 MTTKQRAYLKSLAMTMDPIFQ---IGKNSMTAELTKAVTEALQARELIKISVLKNCADDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
D+ + E T S VV IG+ +++Y+
Sbjct: 58 RDLADMMAERTKSQVVQVIGKKIVLYK 84
>gi|261820119|ref|YP_003258225.1| hypothetical protein Pecwa_0799 [Pectobacterium wasabiae WPP163]
gi|421081045|ref|ZP_15541959.1| RNA-binding protein YhbY [Pectobacterium wasabiae CFBP 3304]
gi|261604132|gb|ACX86618.1| protein of unknown function UPF0044 [Pectobacterium wasabiae
WPP163]
gi|385870304|gb|AFI88824.1| RNA-binding protein YhbY [Pectobacterium sp. SCC3193]
gi|401704055|gb|EJS94264.1| RNA-binding protein YhbY [Pectobacterium wasabiae CFBP 3304]
Length = 97
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L ++G +G+T+GV+ + L +EL+KIK+
Sbjct: 2 NLSNKQKQHLKGLAHPLKP---VVMLGNNGLTEGVLAEIEQALSHHELIKIKV------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V+ + TG+A V IG T+++YRP+
Sbjct: 53 TEDRETKTLIVEAIVRETGAANVQVIGHTLVLYRPA 88
>gi|357057847|ref|ZP_09118705.1| hypothetical protein HMPREF9334_00422 [Selenomonas infelix ATCC
43532]
gi|355375095|gb|EHG22386.1| hypothetical protein HMPREF9334_00422 [Selenomonas infelix ATCC
43532]
Length = 99
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
++GK GVT VV S E ++ EL+K+++ + P E ED + L E + +V IG+
Sbjct: 26 MIGKEGVTPTVVASAREAIKKRELIKVRVLQNAPDEPEDAITMLAERADANLVQVIGRNG 85
Query: 112 IIYRPSLTRMKLE 124
+++R + + ++E
Sbjct: 86 LLFRRNFDKPRIE 98
>gi|226946315|ref|YP_002801388.1| hypothetical protein Avin_42910 [Azotobacter vinelandii DJ]
gi|226721242|gb|ACO80413.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
Length = 104
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT ++KK S H L L V ++GVT+GV+ L +EL+K+KI+ +
Sbjct: 3 LTQEQKKHFKSIGHHLKPVLT---VAENGVTEGVLNELDRALNDHELIKVKINLAEREDR 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ V+ +L A+GS + IG+ ++YR
Sbjct: 60 QAVIAELCAASGSELAQAIGKVALLYR 86
>gi|268592833|ref|ZP_06127054.1| RNA-binding protein YhbY [Providencia rettgeri DSM 1131]
gi|422007184|ref|ZP_16354170.1| RNA-binding protein [Providencia rettgeri Dmel1]
gi|291311619|gb|EFE52072.1| RNA-binding protein YhbY [Providencia rettgeri DSM 1131]
gi|414097074|gb|EKT58729.1| RNA-binding protein [Providencia rettgeri Dmel1]
Length = 97
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L K+ + L S AH L ++G +G+T+GV+ +L +EL+K+KI GE
Sbjct: 2 NLNKKQIQHLKSLAHHLNP---VVMIGNNGLTEGVLAEIELSLAHHELIKVKI----AGE 54
Query: 88 LEDVVKQLEEA----TGSAVVSQIGQTVIIYRPSLTR 120
D + +A TG+ V IG+ ++IYRPS R
Sbjct: 55 DRDTKNLIADAIVRETGAVNVQIIGKILVIYRPSADR 91
>gi|22124594|ref|NP_668017.1| hypothetical protein y0680 [Yersinia pestis KIM10+]
gi|45440433|ref|NP_991972.1| RNA-binding protein [Yersinia pestis biovar Microtus str. 91001]
gi|51594824|ref|YP_069015.1| hypothetical protein YPTB0472 [Yersinia pseudotuberculosis IP
32953]
gi|108806052|ref|YP_649968.1| hypothetical protein YPA_0054 [Yersinia pestis Antiqua]
gi|108813408|ref|YP_649175.1| hypothetical protein YPN_3248 [Yersinia pestis Nepal516]
gi|145600800|ref|YP_001164876.1| hypothetical protein YPDSF_3553 [Yersinia pestis Pestoides F]
gi|153947563|ref|YP_001402558.1| hypothetical protein YpsIP31758_3604 [Yersinia pseudotuberculosis
IP 31758]
gi|153997281|ref|ZP_02022381.1| hypothetical protein YPE_3725 [Yersinia pestis CA88-4125]
gi|162420347|ref|YP_001608278.1| hypothetical protein YpAngola_A3983 [Yersinia pestis Angola]
gi|165928184|ref|ZP_02224016.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937407|ref|ZP_02225970.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011415|ref|ZP_02232313.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213973|ref|ZP_02240008.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401325|ref|ZP_02306825.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420615|ref|ZP_02312368.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423443|ref|ZP_02315196.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167470194|ref|ZP_02334898.1| hypothetical protein YpesF_20455 [Yersinia pestis FV-1]
gi|170025953|ref|YP_001722458.1| hypothetical protein YPK_3738 [Yersinia pseudotuberculosis YPIII]
gi|186893833|ref|YP_001870945.1| hypothetical protein YPTS_0502 [Yersinia pseudotuberculosis PB1/+]
gi|218930518|ref|YP_002348393.1| hypothetical protein YPO3504 [Yersinia pestis CO92]
gi|229839156|ref|ZP_04459315.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229896645|ref|ZP_04511812.1| predicted RNA-binding protein [Yersinia pestis Pestoides A]
gi|229899720|ref|ZP_04514861.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229903882|ref|ZP_04518995.1| predicted RNA-binding protein [Yersinia pestis Nepal516]
gi|270489128|ref|ZP_06206202.1| RNA-binding protein, YhbY family [Yersinia pestis KIM D27]
gi|384138645|ref|YP_005521347.1| hypothetical protein A1122_08380 [Yersinia pestis A1122]
gi|384413203|ref|YP_005622565.1| putative RNA-binding protein [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420548662|ref|ZP_15046454.1| RNA-binding protein YhbY [Yersinia pestis PY-01]
gi|420553986|ref|ZP_15051201.1| RNA-binding protein YhbY [Yersinia pestis PY-02]
gi|420559589|ref|ZP_15056070.1| RNA-binding protein YhbY [Yersinia pestis PY-03]
gi|420564971|ref|ZP_15060906.1| RNA-binding protein YhbY [Yersinia pestis PY-04]
gi|420570015|ref|ZP_15065488.1| RNA-binding protein YhbY [Yersinia pestis PY-05]
gi|420575677|ref|ZP_15070609.1| RNA-binding protein YhbY [Yersinia pestis PY-06]
gi|420581012|ref|ZP_15075464.1| RNA-binding protein YhbY [Yersinia pestis PY-07]
gi|420586355|ref|ZP_15080298.1| RNA-binding protein YhbY [Yersinia pestis PY-08]
gi|420591459|ref|ZP_15084890.1| RNA-binding protein YhbY [Yersinia pestis PY-09]
gi|420596846|ref|ZP_15089732.1| RNA-binding protein YhbY [Yersinia pestis PY-10]
gi|420602525|ref|ZP_15094777.1| RNA-binding protein YhbY [Yersinia pestis PY-11]
gi|420607917|ref|ZP_15099664.1| RNA-binding protein YhbY [Yersinia pestis PY-12]
gi|420613344|ref|ZP_15104530.1| RNA-binding protein YhbY [Yersinia pestis PY-13]
gi|420618692|ref|ZP_15109191.1| CRS1 / YhbY domain protein [Yersinia pestis PY-14]
gi|420624027|ref|ZP_15113999.1| RNA-binding protein YhbY [Yersinia pestis PY-15]
gi|420629000|ref|ZP_15118510.1| RNA-binding protein YhbY [Yersinia pestis PY-16]
gi|420634205|ref|ZP_15123175.1| RNA-binding protein YhbY [Yersinia pestis PY-19]
gi|420639425|ref|ZP_15127872.1| RNA-binding protein YhbY [Yersinia pestis PY-25]
gi|420644884|ref|ZP_15132862.1| RNA-binding protein YhbY [Yersinia pestis PY-29]
gi|420650187|ref|ZP_15137642.1| RNA-binding protein YhbY [Yersinia pestis PY-32]
gi|420655798|ref|ZP_15142688.1| RNA-binding protein YhbY [Yersinia pestis PY-34]
gi|420661248|ref|ZP_15147559.1| RNA-binding protein YhbY [Yersinia pestis PY-36]
gi|420666600|ref|ZP_15152382.1| RNA-binding protein YhbY [Yersinia pestis PY-42]
gi|420671469|ref|ZP_15156823.1| CRS1 / YhbY domain protein [Yersinia pestis PY-45]
gi|420676812|ref|ZP_15161678.1| RNA-binding protein YhbY [Yersinia pestis PY-46]
gi|420682360|ref|ZP_15166686.1| RNA-binding protein YhbY [Yersinia pestis PY-47]
gi|420687772|ref|ZP_15171501.1| RNA-binding protein YhbY [Yersinia pestis PY-48]
gi|420693012|ref|ZP_15176091.1| RNA-binding protein YhbY [Yersinia pestis PY-52]
gi|420698781|ref|ZP_15181177.1| RNA-binding protein YhbY [Yersinia pestis PY-53]
gi|420704630|ref|ZP_15185803.1| CRS1 / YhbY domain protein [Yersinia pestis PY-54]
gi|420709925|ref|ZP_15190530.1| RNA-binding protein YhbY [Yersinia pestis PY-55]
gi|420715415|ref|ZP_15195405.1| RNA-binding protein YhbY [Yersinia pestis PY-56]
gi|420720937|ref|ZP_15200131.1| RNA-binding protein YhbY [Yersinia pestis PY-58]
gi|420726397|ref|ZP_15204946.1| RNA-binding protein YhbY [Yersinia pestis PY-59]
gi|420731905|ref|ZP_15209896.1| RNA-binding protein YhbY [Yersinia pestis PY-60]
gi|420736896|ref|ZP_15214407.1| RNA-binding protein YhbY [Yersinia pestis PY-61]
gi|420742383|ref|ZP_15219336.1| RNA-binding protein YhbY [Yersinia pestis PY-63]
gi|420748231|ref|ZP_15224266.1| RNA-binding protein YhbY [Yersinia pestis PY-64]
gi|420753517|ref|ZP_15229005.1| RNA-binding protein YhbY [Yersinia pestis PY-65]
gi|420759456|ref|ZP_15233770.1| RNA-binding protein YhbY [Yersinia pestis PY-66]
gi|420764682|ref|ZP_15238388.1| RNA-binding protein YhbY [Yersinia pestis PY-71]
gi|420769918|ref|ZP_15243080.1| RNA-binding protein YhbY [Yersinia pestis PY-72]
gi|420774887|ref|ZP_15247587.1| RNA-binding protein YhbY [Yersinia pestis PY-76]
gi|420780522|ref|ZP_15252540.1| RNA-binding protein YhbY [Yersinia pestis PY-88]
gi|420786113|ref|ZP_15257425.1| RNA-binding protein YhbY [Yersinia pestis PY-89]
gi|420791169|ref|ZP_15261968.1| CRS1 / YhbY domain protein [Yersinia pestis PY-90]
gi|420796731|ref|ZP_15266975.1| RNA-binding protein YhbY [Yersinia pestis PY-91]
gi|420801834|ref|ZP_15271556.1| RNA-binding protein YhbY [Yersinia pestis PY-92]
gi|420807179|ref|ZP_15276403.1| RNA-binding protein YhbY [Yersinia pestis PY-93]
gi|420812567|ref|ZP_15281233.1| CRS1 / YhbY domain protein [Yersinia pestis PY-94]
gi|420818070|ref|ZP_15286217.1| RNA-binding protein YhbY [Yersinia pestis PY-95]
gi|420823373|ref|ZP_15290964.1| RNA-binding protein YhbY [Yersinia pestis PY-96]
gi|420828446|ref|ZP_15295531.1| RNA-binding protein YhbY [Yersinia pestis PY-98]
gi|420834060|ref|ZP_15300599.1| RNA-binding protein YhbY [Yersinia pestis PY-99]
gi|420838992|ref|ZP_15305061.1| RNA-binding protein YhbY [Yersinia pestis PY-100]
gi|420844193|ref|ZP_15309777.1| RNA-binding protein YhbY [Yersinia pestis PY-101]
gi|420849854|ref|ZP_15314858.1| RNA-binding protein YhbY [Yersinia pestis PY-102]
gi|420855539|ref|ZP_15319660.1| RNA-binding protein YhbY [Yersinia pestis PY-103]
gi|420860644|ref|ZP_15324159.1| RNA-binding protein YhbY [Yersinia pestis PY-113]
gi|421765014|ref|ZP_16201801.1| hypothetical protein INS_18146 [Yersinia pestis INS]
gi|21957397|gb|AAM84268.1|AE013670_5 hypothetical protein y0680 [Yersinia pestis KIM10+]
gi|45435290|gb|AAS60849.1| Predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Yersinia pestis biovar Microtus str.
91001]
gi|51588106|emb|CAH19712.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108777056|gb|ABG19575.1| hypothetical protein YPN_3248 [Yersinia pestis Nepal516]
gi|108777965|gb|ABG12023.1| hypothetical protein YPA_0054 [Yersinia pestis Antiqua]
gi|115349129|emb|CAL22092.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145212496|gb|ABP41903.1| hypothetical protein YPDSF_3553 [Yersinia pestis Pestoides F]
gi|149288918|gb|EDM38998.1| hypothetical protein YPE_3725 [Yersinia pestis CA88-4125]
gi|152959058|gb|ABS46519.1| conserved hypothetical protein TIGR00253 [Yersinia
pseudotuberculosis IP 31758]
gi|162353162|gb|ABX87110.1| conserved hypothetical protein TIGR00253 [Yersinia pestis Angola]
gi|165914512|gb|EDR33126.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. IP275]
gi|165919871|gb|EDR37172.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989799|gb|EDR42100.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204768|gb|EDR49248.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961421|gb|EDR57442.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049350|gb|EDR60758.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057613|gb|EDR67359.1| conserved hypothetical protein TIGR00253 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752487|gb|ACA70005.1| protein of unknown function UPF0044 [Yersinia pseudotuberculosis
YPIII]
gi|186696859|gb|ACC87488.1| protein of unknown function UPF0044 [Yersinia pseudotuberculosis
PB1/+]
gi|229679652|gb|EEO75755.1| predicted RNA-binding protein [Yersinia pestis Nepal516]
gi|229687212|gb|EEO79287.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695522|gb|EEO85569.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700423|gb|EEO88455.1| predicted RNA-binding protein [Yersinia pestis Pestoides A]
gi|270337632|gb|EFA48409.1| RNA-binding protein, YhbY family [Yersinia pestis KIM D27]
gi|320013707|gb|ADV97278.1| putative RNA-binding protein [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342853774|gb|AEL72327.1| hypothetical protein A1122_08380 [Yersinia pestis A1122]
gi|391422327|gb|EIQ84915.1| RNA-binding protein YhbY [Yersinia pestis PY-01]
gi|391422514|gb|EIQ85085.1| RNA-binding protein YhbY [Yersinia pestis PY-02]
gi|391422677|gb|EIQ85232.1| RNA-binding protein YhbY [Yersinia pestis PY-03]
gi|391437473|gb|EIQ98326.1| RNA-binding protein YhbY [Yersinia pestis PY-04]
gi|391438556|gb|EIQ99291.1| RNA-binding protein YhbY [Yersinia pestis PY-05]
gi|391442301|gb|EIR02709.1| RNA-binding protein YhbY [Yersinia pestis PY-06]
gi|391454444|gb|EIR13656.1| RNA-binding protein YhbY [Yersinia pestis PY-07]
gi|391454977|gb|EIR14133.1| RNA-binding protein YhbY [Yersinia pestis PY-08]
gi|391456982|gb|EIR15961.1| RNA-binding protein YhbY [Yersinia pestis PY-09]
gi|391470196|gb|EIR27884.1| RNA-binding protein YhbY [Yersinia pestis PY-10]
gi|391471173|gb|EIR28756.1| RNA-binding protein YhbY [Yersinia pestis PY-11]
gi|391472455|gb|EIR29913.1| RNA-binding protein YhbY [Yersinia pestis PY-12]
gi|391486086|gb|EIR42155.1| RNA-binding protein YhbY [Yersinia pestis PY-13]
gi|391487756|gb|EIR43657.1| RNA-binding protein YhbY [Yersinia pestis PY-15]
gi|391487847|gb|EIR43741.1| CRS1 / YhbY domain protein [Yersinia pestis PY-14]
gi|391502292|gb|EIR56605.1| RNA-binding protein YhbY [Yersinia pestis PY-19]
gi|391502480|gb|EIR56771.1| RNA-binding protein YhbY [Yersinia pestis PY-16]
gi|391507349|gb|EIR61183.1| RNA-binding protein YhbY [Yersinia pestis PY-25]
gi|391518156|gb|EIR70890.1| RNA-binding protein YhbY [Yersinia pestis PY-29]
gi|391519481|gb|EIR72111.1| RNA-binding protein YhbY [Yersinia pestis PY-34]
gi|391520280|gb|EIR72841.1| RNA-binding protein YhbY [Yersinia pestis PY-32]
gi|391532721|gb|EIR84076.1| RNA-binding protein YhbY [Yersinia pestis PY-36]
gi|391535482|gb|EIR86546.1| RNA-binding protein YhbY [Yersinia pestis PY-42]
gi|391538016|gb|EIR88853.1| CRS1 / YhbY domain protein [Yersinia pestis PY-45]
gi|391550945|gb|EIS00504.1| RNA-binding protein YhbY [Yersinia pestis PY-46]
gi|391551258|gb|EIS00784.1| RNA-binding protein YhbY [Yersinia pestis PY-47]
gi|391551597|gb|EIS01092.1| RNA-binding protein YhbY [Yersinia pestis PY-48]
gi|391565884|gb|EIS13935.1| RNA-binding protein YhbY [Yersinia pestis PY-52]
gi|391567241|gb|EIS15129.1| RNA-binding protein YhbY [Yersinia pestis PY-53]
gi|391571231|gb|EIS18609.1| CRS1 / YhbY domain protein [Yersinia pestis PY-54]
gi|391580553|gb|EIS26534.1| RNA-binding protein YhbY [Yersinia pestis PY-55]
gi|391582383|gb|EIS28144.1| RNA-binding protein YhbY [Yersinia pestis PY-56]
gi|391592965|gb|EIS37328.1| RNA-binding protein YhbY [Yersinia pestis PY-58]
gi|391596305|gb|EIS40254.1| RNA-binding protein YhbY [Yersinia pestis PY-60]
gi|391597055|gb|EIS40911.1| RNA-binding protein YhbY [Yersinia pestis PY-59]
gi|391610770|gb|EIS53016.1| RNA-binding protein YhbY [Yersinia pestis PY-61]
gi|391611134|gb|EIS53338.1| RNA-binding protein YhbY [Yersinia pestis PY-63]
gi|391613169|gb|EIS55165.1| RNA-binding protein YhbY [Yersinia pestis PY-64]
gi|391623983|gb|EIS64679.1| RNA-binding protein YhbY [Yersinia pestis PY-65]
gi|391627796|gb|EIS67966.1| RNA-binding protein YhbY [Yersinia pestis PY-66]
gi|391634401|gb|EIS73681.1| RNA-binding protein YhbY [Yersinia pestis PY-71]
gi|391636214|gb|EIS75275.1| RNA-binding protein YhbY [Yersinia pestis PY-72]
gi|391646474|gb|EIS84212.1| RNA-binding protein YhbY [Yersinia pestis PY-76]
gi|391649761|gb|EIS87117.1| RNA-binding protein YhbY [Yersinia pestis PY-88]
gi|391654081|gb|EIS90947.1| RNA-binding protein YhbY [Yersinia pestis PY-89]
gi|391659465|gb|EIS95745.1| CRS1 / YhbY domain protein [Yersinia pestis PY-90]
gi|391667056|gb|EIT02431.1| RNA-binding protein YhbY [Yersinia pestis PY-91]
gi|391676377|gb|EIT10790.1| RNA-binding protein YhbY [Yersinia pestis PY-93]
gi|391676838|gb|EIT11202.1| RNA-binding protein YhbY [Yersinia pestis PY-92]
gi|391677280|gb|EIT11601.1| CRS1 / YhbY domain protein [Yersinia pestis PY-94]
gi|391690425|gb|EIT23452.1| RNA-binding protein YhbY [Yersinia pestis PY-95]
gi|391692991|gb|EIT25778.1| RNA-binding protein YhbY [Yersinia pestis PY-96]
gi|391694693|gb|EIT27328.1| RNA-binding protein YhbY [Yersinia pestis PY-98]
gi|391707777|gb|EIT39093.1| RNA-binding protein YhbY [Yersinia pestis PY-99]
gi|391710674|gb|EIT41706.1| RNA-binding protein YhbY [Yersinia pestis PY-100]
gi|391711205|gb|EIT42187.1| RNA-binding protein YhbY [Yersinia pestis PY-101]
gi|391723581|gb|EIT53249.1| RNA-binding protein YhbY [Yersinia pestis PY-102]
gi|391724049|gb|EIT53666.1| RNA-binding protein YhbY [Yersinia pestis PY-103]
gi|391726998|gb|EIT56275.1| RNA-binding protein YhbY [Yersinia pestis PY-113]
gi|411173920|gb|EKS43957.1| hypothetical protein INS_18146 [Yersinia pestis INS]
Length = 97
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTC 84
L K+K+ L S AH L ++G +G+T+GV+ +TL +EL+K+KI R
Sbjct: 2 NLNNKQKQHLKSLAHPLKP---VVMLGNNGLTEGVLAEIEQTLAHHELIKVKITAEERET 58
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ D + + TG+ V IG +++YRP+
Sbjct: 59 KALIADAIVR---ETGAVNVQMIGNILVLYRPA 88
>gi|304413875|ref|ZP_07395292.1| putative RNA-binding protein [Candidatus Regiella insecticola LSR1]
gi|304283595|gb|EFL91990.1| putative RNA-binding protein [Candidatus Regiella insecticola LSR1]
Length = 97
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L K+K+ L S AH L ++G +G+T V+ +TLE +E++KIKI
Sbjct: 2 NLNNKQKQHLKSIAHPLKP---VVMIGNNGLTKAVLAEIEQTLEHHEIIKIKITTEKRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
++ + + T + +V IG +++YRP+ R
Sbjct: 59 KSNIADTIVDKTNATIVQIIGNILVLYRPAKDR 91
>gi|157368728|ref|YP_001476717.1| hypothetical protein Spro_0481 [Serratia proteamaculans 568]
gi|270265051|ref|ZP_06193314.1| hypothetical protein SOD_k00870 [Serratia odorifera 4Rx13]
gi|293393161|ref|ZP_06637476.1| RNA-binding protein YhbY [Serratia odorifera DSM 4582]
gi|333925307|ref|YP_004498886.1| RNA-binding, CRM domain-containing protein [Serratia sp. AS12]
gi|333930260|ref|YP_004503838.1| RNA-binding, CRM domain-containing protein [Serratia plymuthica
AS9]
gi|386327131|ref|YP_006023301.1| RNA-binding, CRM domain-containing protein [Serratia sp. AS13]
gi|386823046|ref|ZP_10110204.1| RNA-binding, CRM domain-containing protein [Serratia plymuthica
PRI-2C]
gi|421781333|ref|ZP_16217800.1| RNA-binding protein, YhbY family [Serratia plymuthica A30]
gi|448240196|ref|YP_007404249.1| RNA-binding protein YhbY [Serratia marcescens WW4]
gi|157320492|gb|ABV39589.1| protein of unknown function UPF0044 [Serratia proteamaculans 568]
gi|270040985|gb|EFA14086.1| hypothetical protein SOD_k00870 [Serratia odorifera 4Rx13]
gi|291424307|gb|EFE97521.1| RNA-binding protein YhbY [Serratia odorifera DSM 4582]
gi|333471867|gb|AEF43577.1| RNA-binding, CRM domain protein [Serratia plymuthica AS9]
gi|333489367|gb|AEF48529.1| RNA-binding, CRM domain protein [Serratia sp. AS12]
gi|333959464|gb|AEG26237.1| RNA-binding, CRM domain protein [Serratia sp. AS13]
gi|386380102|gb|EIJ20881.1| RNA-binding, CRM domain-containing protein [Serratia plymuthica
PRI-2C]
gi|407756542|gb|EKF66658.1| RNA-binding protein, YhbY family [Serratia plymuthica A30]
gi|445210560|gb|AGE16230.1| RNA-binding protein YhbY [Serratia marcescens WW4]
gi|453065006|gb|EMF05970.1| RNA-binding, CRM domain-containing protein [Serratia marcescens
VGH107]
Length = 97
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTC 84
L K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI R
Sbjct: 2 NLNNKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIAAEDRET 58
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ D + + TG+ V IG T+I+YRPS
Sbjct: 59 KTLIADAIVR---ETGACNVQVIGSTLILYRPS 88
>gi|50119644|ref|YP_048811.1| hypothetical protein ECA0696 [Pectobacterium atrosepticum SCRI1043]
gi|227113765|ref|ZP_03827421.1| hypothetical protein PcarbP_12406 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
gi|227328602|ref|ZP_03832626.1| hypothetical protein PcarcW_15214 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
gi|253686965|ref|YP_003016155.1| hypothetical protein PC1_0564 [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|403057029|ref|YP_006645246.1| hypothetical protein PCC21_005900 [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|49610170|emb|CAG73610.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
gi|251753543|gb|ACT11619.1| protein of unknown function UPF0044 [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|402804355|gb|AFR01993.1| hypothetical protein PCC21_005900 [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 97
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L ++G +G+T+GV+ + L +EL+KIK+
Sbjct: 2 NLSNKQKQHLKGLAHPLKP---VVMLGNNGLTEGVLAEIEQALAHHELIKIKV------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V+ + TG+A V IG T+++YRP+
Sbjct: 53 TEDRETKALIVEAIVRETGAANVQVIGHTLVLYRPA 88
>gi|440285998|ref|YP_007338763.1| putative RNA-binding protein, YhbY family [Enterobacteriaceae
bacterium strain FGI 57]
gi|440045520|gb|AGB76578.1| putative RNA-binding protein, YhbY family [Enterobacteriaceae
bacterium strain FGI 57]
Length = 110
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+K+
Sbjct: 15 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKVASEDRET 71
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + TG+ V IG+ +++YRPS
Sbjct: 72 KTLIVDAIVRETGACNVQVIGKMLVLYRPS 101
>gi|238924059|ref|YP_002937575.1| hypothetical protein EUBREC_1697 [Eubacterium rectale ATCC 33656]
gi|238875734|gb|ACR75441.1| hypothetical protein EUBREC_1697 [Eubacterium rectale ATCC 33656]
gi|291524794|emb|CBK90381.1| conserved hypothetical protein TIGR00253 [Eubacterium rectale DSM
17629]
gi|291528885|emb|CBK94471.1| conserved hypothetical protein TIGR00253 [Eubacterium rectale
M104/1]
Length = 98
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K++ L+S A ++ +GK+ +T ++ + LE EL+K+ + + C +
Sbjct: 2 NLSSKQRAYLSSLASTINPIFN---IGKASLTPEIIEALDAALEKRELIKVAVLKNCIDD 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + E T SAVV IG+ +I YRP+
Sbjct: 59 PREIASVIGERTHSAVVKVIGKKMIFYRPA 88
>gi|312622633|ref|YP_004024246.1| hypothetical protein Calkro_1574 [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203100|gb|ADQ46427.1| protein of unknown function UPF0044 [Caldicellulosiruptor
kronotskyensis 2002]
Length = 95
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ +L A+++ ++ +GK G+T+GV+ E L A EL+KI + + C
Sbjct: 2 LTSKQRAKLRGMANTMDAIIR---IGKEGITEGVLKQIDEALSARELIKIALEKNCDKNP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ + + E + V IG+ ++IYR
Sbjct: 59 KEAIVYICEKLNAEPVQVIGRKIVIYR 85
>gi|325916043|ref|ZP_08178333.1| hypothetical protein TIGR00253 [Xanthomonas vesicatoria ATCC 35937]
gi|325537719|gb|EGD09425.1| hypothetical protein TIGR00253 [Xanthomonas vesicatoria ATCC 35937]
Length = 101
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + E LE +EL+K+K+
Sbjct: 5 LTSAQTRFLRGQAHDLKALLQT---GGKGVTPAFLAELEEVLERHELIKVKVASEDRETR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ +L TGSA+V +IG I+YRPS
Sbjct: 62 DALIAELVGQTGSALVQRIGHVAILYRPS 90
>gi|300721529|ref|YP_003710804.1| RNA binding protein [Xenorhabdus nematophila ATCC 19061]
gi|297628021|emb|CBJ88570.1| putative RNA binding protein [Xenorhabdus nematophila ATCC 19061]
Length = 108
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 11/93 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K+ + L S AHSL ++G +G+T+GV+ +TL +EL+K+K+ GE
Sbjct: 14 LNKKQVQYLKSLAHSLKP---VVMIGNNGLTEGVLAEIEQTLSHHELIKVKV----AGED 66
Query: 89 EDVVKQLEEA----TGSAVVSQIGQTVIIYRPS 117
++ + EA TG+ V IG+ +++YRPS
Sbjct: 67 REIKTLIAEAIVRETGAHNVQIIGKMLVLYRPS 99
>gi|225572151|ref|ZP_03781015.1| hypothetical protein RUMHYD_00445 [Blautia hydrogenotrophica DSM
10507]
gi|225040323|gb|EEG50569.1| RNA-binding protein, YhbY family [Blautia hydrogenotrophica DSM
10507]
Length = 97
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
+Y L K++ L +GK+GVT S E LEA EL+KI + + C + ++ + L E
Sbjct: 7 AYLKGLAMKIEPILQLGKNGVTPENTASVNEALEARELIKISVLQNCLYDPREMAEVLAE 66
Query: 98 ATGSAVVSQIGQTVIIYR 115
T S VV IG+ +I+YR
Sbjct: 67 RTQSQVVQVIGKKIILYR 84
>gi|21231164|ref|NP_637081.1| hypothetical protein XCC1711 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66768828|ref|YP_243590.1| hypothetical protein XC_2520 [Xanthomonas campestris pv. campestris
str. 8004]
gi|188991943|ref|YP_001903953.1| hypothetical protein xccb100_2548 [Xanthomonas campestris pv.
campestris str. B100]
gi|384427599|ref|YP_005636958.1| hypothetical protein XCR_1947 [Xanthomonas campestris pv. raphani
756C]
gi|21112803|gb|AAM41005.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66574160|gb|AAY49570.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|167733703|emb|CAP51908.1| Conserved hypothetical protein [Xanthomonas campestris pv.
campestris]
gi|341936701|gb|AEL06840.1| conserved hypothetical protein [Xanthomonas campestris pv. raphani
756C]
Length = 101
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT V + LE +EL+K+K+
Sbjct: 5 LTSAQNRFLRGQAHDLKALLQ---TGGKGVTPAFVAELEDVLERHELIKVKVAAEDRETR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ ++ E TG A+V +IG I+YRPS
Sbjct: 62 DALIAEIIEHTGCALVQRIGHVAILYRPS 90
>gi|312795596|ref|YP_004028518.1| RNA binding protein [Burkholderia rhizoxinica HKI 454]
gi|312167371|emb|CBW74374.1| Hypothetical RNA binding protein [Burkholderia rhizoxinica HKI 454]
Length = 195
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AHSL + L+G G+TD V+ L A+EL+KI++
Sbjct: 1 MPALTLSSAERSALRSQAHSLKPVV---LIGADGLTDAVLNEIDVHLNAHELIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRK--ESKL 141
E + + + +A + IG+ ++I+RP + + A R K +
Sbjct: 58 ERDERAALYDTICDRLSAAPIQHIGKLLVIWRPQRDDTEASTPRGSASRTRATKTQAAAQ 117
Query: 142 KPLLLKKAGVSRLSGRR 158
+ + AG +R + RR
Sbjct: 118 RSTDVPSAGTARCAARR 134
>gi|425744563|ref|ZP_18862618.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-323]
gi|425490159|gb|EKU56459.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-323]
Length = 108
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L++ E+K L H+L + ++G G+T+ V+ L +EL+K+KI
Sbjct: 1 MAALSIHERKRLRQIGHALNPVV---MIGSQGLTENVIEETNRALNDHELIKVKI----A 53
Query: 86 GELED----VVKQLEEATGSAVVSQIGQTVIIYRPS 117
GE D V+ + EATG+ V +IG+ V++YR +
Sbjct: 54 GEDRDARGAVIDAIVEATGAESVQKIGKIVLLYRKA 89
>gi|292670995|ref|ZP_06604421.1| transcription-repair coupling factor [Selenomonas noxia ATCC 43541]
gi|292647616|gb|EFF65588.1| transcription-repair coupling factor [Selenomonas noxia ATCC 43541]
Length = 81
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
++GK GVT VV S E ++ EL+K+++ + P E ED + L E + +V IG+
Sbjct: 8 MIGKEGVTPAVVASAREAIKKRELIKVRVLQNAPDEPEDAITVLAERADANLVQVIGRNG 67
Query: 112 IIYRPSLTRMKLE 124
+++R + + ++E
Sbjct: 68 LLFRRNFDKPRIE 80
>gi|377577013|ref|ZP_09805996.1| RNA-binding protein YhbY [Escherichia hermannii NBRC 105704]
gi|377541541|dbj|GAB51161.1| RNA-binding protein YhbY [Escherichia hermannii NBRC 105704]
Length = 97
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 15/99 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + L +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALVHHELIKVKI------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
ED VV+ + TG+ V IG+T+++YRPS R
Sbjct: 53 TEDRETKTLVVEAIVRETGACNVQVIGKTLVLYRPSQER 91
>gi|251792644|ref|YP_003007370.1| hypothetical protein NT05HA_0908 [Aggregatibacter aphrophilus
NJ8700]
gi|422336201|ref|ZP_16417174.1| RNA-binding protein [Aggregatibacter aphrophilus F0387]
gi|247534037|gb|ACS97283.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700]
gi|353346387|gb|EHB90672.1| RNA-binding protein [Aggregatibacter aphrophilus F0387]
Length = 100
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L ++G +G+T+GV+ +L +EL+K+KI +
Sbjct: 5 LSTKQKQYLKGLAHHLSP---VVMLGGNGLTEGVLAEIDLSLTHHELIKVKISGSDRETK 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
+ ++ + TG+A V IG +++YRPS EE K Q R
Sbjct: 62 QLIINAIVRETGAAEVQTIGHVLVLYRPS------EENKIQLPR 99
>gi|307129376|ref|YP_003881392.1| RNA-binding protein [Dickeya dadantii 3937]
gi|306526905|gb|ADM96835.1| predicted RNA-binding protein [Dickeya dadantii 3937]
Length = 97
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTC 84
L+ K+K+ L AH L ++G +G+T+GV+ + LE +EL+K+KI R
Sbjct: 2 NLSNKQKQHLKGLAHPLKP---VVMLGNNGLTEGVLAEIEQALEHHELIKVKIAAEDRET 58
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
G + D + L E TG++ V IG T+++YR S
Sbjct: 59 KGLIVDAI--LRE-TGASNVQVIGHTLVLYRAS 88
>gi|210632348|ref|ZP_03297315.1| hypothetical protein COLSTE_01209 [Collinsella stercoris DSM 13279]
gi|210159664|gb|EEA90635.1| RNA-binding protein, YhbY family [Collinsella stercoris DSM 13279]
Length = 99
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+ ++L + AH L + L+GK+ VTD + E LEA+EL+K +
Sbjct: 3 LTGKQVRQLRALAHHLNPVV---LIGKADVTDAIAKQAKEALEAHELIKCGVQDGSLLSC 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKK 127
+ QL E G+ VV IG +YR S +R +E K
Sbjct: 60 REAADQLAERVGAEVVQVIGHRFSLYRAS-SRKDIEHIK 97
>gi|300114144|ref|YP_003760719.1| hypothetical protein Nwat_1492 [Nitrosococcus watsonii C-113]
gi|299540081|gb|ADJ28398.1| protein of unknown function UPF0044 [Nitrosococcus watsonii C-113]
Length = 96
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L + AHSL + +VG+SGVT V+ +LE +EL+KIK+H E
Sbjct: 3 LTKHQTRYLRTLAHSLKPVV---IVGQSGVTTAVLDEIASSLEHHELIKIKMHDAEREER 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+VK + + T + +V IG+ I YR
Sbjct: 60 PAMVKSILQVTQAELVQVIGRIGIFYR 86
>gi|257125131|ref|YP_003163245.1| hypothetical protein Lebu_0336 [Leptotrichia buccalis C-1013-b]
gi|257049070|gb|ACV38254.1| protein of unknown function UPF0044 [Leptotrichia buccalis
C-1013-b]
Length = 112
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ +L+ KE+ L AH+L ++ +GK G+ + V+ S E ++ EL+K+KI +
Sbjct: 1 MIQLSSKERAFLRKLAHNLEPIVR---IGKDGIDENVLKSIAEVVKKRELIKVKILQNSS 57
Query: 86 GELE-DVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
E++ ++ ++ T S V +IG+ +I ++P T+
Sbjct: 58 VEIDREMADEIARDTKSVFVDRIGKILIFFKPKTTK 93
>gi|118497151|ref|YP_898201.1| RNA-binding protein [Francisella novicida U112]
gi|194323449|ref|ZP_03057226.1| conserved hypothetical protein [Francisella novicida FTE]
gi|208778944|ref|ZP_03246290.1| conserved hypothetical protein [Francisella novicida FTG]
gi|254372518|ref|ZP_04988007.1| hypothetical protein FTCG_00080 [Francisella tularensis subsp.
novicida GA99-3549]
gi|118423057|gb|ABK89447.1| RNA-binding protein [Francisella novicida U112]
gi|151570245|gb|EDN35899.1| hypothetical protein FTCG_00080 [Francisella novicida GA99-3549]
gi|194322304|gb|EDX19785.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
gi|208744744|gb|EDZ91042.1| conserved hypothetical protein [Francisella novicida FTG]
Length = 92
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+ VK++++L + AHSL + L+G+ G+T+ V+ L +++L+K+K+ R E
Sbjct: 1 MDVKQQQKLKAQAHSLKPVV---LMGEKGLTENVILEIDLALASHQLIKVKVGRLPKEEK 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + ++ +AT S +V IG +++YR
Sbjct: 58 QQIASEITQATSSELVQIIGNILVLYR 84
>gi|344995821|ref|YP_004798164.1| hypothetical protein Calla_0533 [Caldicellulosiruptor lactoaceticus
6A]
gi|343964040|gb|AEM73187.1| protein of unknown function UPF0044 [Caldicellulosiruptor
lactoaceticus 6A]
Length = 95
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ +L A+++ ++ +GK G+TD V+ E L A EL+KI + + C
Sbjct: 2 LTSKQRAKLRGMANTMDAIIR---IGKEGITDRVLKQIDEALTARELIKIALEKNCDKNP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + + E + V IG+ ++IYR S
Sbjct: 59 KEAMAYICEKLNAEPVQVIGRKIVIYRMS 87
>gi|293374271|ref|ZP_06620599.1| RNA-binding protein, YhbY family [Turicibacter sanguinis PC909]
gi|325844816|ref|ZP_08168268.1| RNA-binding protein, YhbY family [Turicibacter sp. HGF1]
gi|292647104|gb|EFF65086.1| RNA-binding protein, YhbY family [Turicibacter sanguinis PC909]
gi|325489003|gb|EGC91391.1| RNA-binding protein, YhbY family [Turicibacter sp. HGF1]
Length = 97
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K L +H++ ++ +GK+GV + +V + + LEA EL+KI + + C E
Sbjct: 2 LTGKQKSYLKGLSHNMQPIIQ---IGKNGVNEMLVKTIEDALEARELIKISVLQNCLEEP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + + + + VV IG+T+I+Y+ S
Sbjct: 59 KTMAIDIADVLEAEVVQVIGRTIILYKQS 87
>gi|290473439|ref|YP_003466306.1| RNA binding protein [Xenorhabdus bovienii SS-2004]
gi|289172739|emb|CBJ79510.1| putative RNA binding protein [Xenorhabdus bovienii SS-2004]
Length = 97
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 11/93 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K+ + L S AHSL ++G +G+T+GV+ +TL +EL+K+K+ GE
Sbjct: 3 LNKKQVQYLKSLAHSLKP---VVMIGNNGLTEGVLAEIEQTLSHHELIKVKV----AGED 55
Query: 89 EDVVKQLEEA----TGSAVVSQIGQTVIIYRPS 117
++ + EA TG+ V IG+ +++YRPS
Sbjct: 56 REIKTLIAEAIVRETGAYNVQIIGKMLVLYRPS 88
>gi|431794926|ref|YP_007221831.1| RNA-binding protein [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785152|gb|AGA70435.1| putative RNA-binding protein, YhbY family [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 97
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + + + L+ VGK GVTD VV ETL EL+K R P
Sbjct: 2 LTGKQKRFLRAMGNEMDPVLQ---VGKGGVTDSVVVQTDETLAVRELIK---GRVLPNST 55
Query: 89 EDV---VKQLEEATGSAVVSQIGQTVIIYRPS 117
EDV + L E T S +V IG+ ++YR S
Sbjct: 56 EDVQGAAEVLAERTSSELVQVIGRNFLLYRES 87
>gi|251791043|ref|YP_003005764.1| hypothetical protein Dd1591_3473 [Dickeya zeae Ech1591]
gi|271499166|ref|YP_003332191.1| hypothetical protein Dd586_0592 [Dickeya dadantii Ech586]
gi|247539664|gb|ACT08285.1| protein of unknown function UPF0044 [Dickeya zeae Ech1591]
gi|270342721|gb|ACZ75486.1| protein of unknown function UPF0044 [Dickeya dadantii Ech586]
Length = 97
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTC 84
L+ K+K+ L AH L ++G +G+T+GV+ + LE +EL+K+KI R
Sbjct: 2 NLSNKQKQHLKGLAHPLKP---VVMLGNNGLTEGVLAEIEQALEHHELIKVKIATEDRET 58
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
G + D + L E TG++ V IG T+++YR S
Sbjct: 59 KGLIVDAI--LRE-TGASNVQVIGHTLVLYRAS 88
>gi|365967496|ref|YP_004949058.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
ANH9381]
gi|416076582|ref|ZP_11585579.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|416091810|ref|ZP_11588284.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype b str. I23C]
gi|444338363|ref|ZP_21152209.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
gi|348004722|gb|EGY45219.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|348008966|gb|EGY49173.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype b str. I23C]
gi|365746409|gb|AEW77314.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
ANH9381]
gi|443545199|gb|ELT55042.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
Length = 100
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L ++G +G+T+GV+ +L +EL+K+KI +
Sbjct: 5 LSTKQKQYLKGLAHHLSP---VVMLGGNGLTEGVLAEIDLSLNHHELIKVKISGSDRETK 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
+ ++ + TG+ V IG +++YRPS EE K Q R
Sbjct: 62 QLIIDAIVRETGATAVQTIGHVLVLYRPS------EENKIQLPR 99
>gi|294782584|ref|ZP_06747910.1| RNA-binding protein YqeI [Fusobacterium sp. 1_1_41FAA]
gi|294481225|gb|EFG29000.1| RNA-binding protein YqeI [Fusobacterium sp. 1_1_41FAA]
Length = 99
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 41 AHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATG 100
AH+L ++ +GK G+ ++ S ++ +E+ EL+K+KI + C E + +L +
Sbjct: 13 AHNLEAIVR---IGKDGLNQNIIQSILDAIESRELIKVKILQNCEEEKTVIYSKLMDNKD 69
Query: 101 SAVVSQIGQTVIIYRPS 117
VV IG+T+II++ +
Sbjct: 70 FEVVGMIGRTIIIFKEN 86
>gi|302386384|ref|YP_003822206.1| hypothetical protein Closa_2004 [Clostridium saccharolyticum WM1]
gi|302197012|gb|ADL04583.1| protein of unknown function UPF0044 [Clostridium saccharolyticum
WM1]
Length = 98
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GKS +T + + E LEA EL+KI + + C E+ + L E T S VV IG+ ++
Sbjct: 22 IGKSSLTPEITNAVAEALEARELIKITVLKNCLDEINSLAGVLSERTHSQVVQVIGRKIV 81
Query: 113 IYR 115
+Y+
Sbjct: 82 LYK 84
>gi|260891167|ref|ZP_05902430.1| RNA-binding protein YhbY [Leptotrichia hofstadii F0254]
gi|260859194|gb|EEX73694.1| RNA-binding protein YhbY [Leptotrichia hofstadii F0254]
Length = 115
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ +L+ KE+ L AH+L ++ +GK G+ + V+ S E ++ EL+K+KI +
Sbjct: 1 MIQLSSKERAFLKKLAHNLDPIVR---IGKDGIDENVLKSISEVVKKRELIKVKILQNSS 57
Query: 86 GELE-DVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
E + ++ ++ + T S V +IG +I ++P T+
Sbjct: 58 VEFDREMATEIAQKTKSVFVDKIGSVLIFFKPKTTK 93
>gi|384123834|ref|YP_005506454.1| hypothetical protein YPD4_3247 [Yersinia pestis D106004]
gi|262363430|gb|ACY60151.1| hypothetical protein YPD4_3247 [Yersinia pestis D106004]
Length = 129
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTC 84
L K+K+ L S AH L + ++G +G+T+GV+ +TL +EL+K+KI R
Sbjct: 2 NLNNKQKQHLKSLAHPLKPVV---MLGNNGLTEGVLAEIEQTLAHHELIKVKITAEERET 58
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ D + + TG+ V IG +++YRP+
Sbjct: 59 KALIADAIVR---ETGAVNVQMIGNILVLYRPA 88
>gi|430376387|ref|ZP_19430790.1| hypothetical protein MOMA_04550 [Moraxella macacae 0408225]
gi|429541618|gb|ELA09646.1| hypothetical protein MOMA_04550 [Moraxella macacae 0408225]
Length = 106
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 40 YAHSLGKKLK-CQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEA 98
+ +G +L ++G G+TD V+ L +EL+K+KI + E + + + + EA
Sbjct: 13 FLKGIGHRLNPVVIIGGHGITDNVIEEVNRALNDHELIKVKIPQGSKAERDAINQAISEA 72
Query: 99 TGSAVVSQIGQTVIIYR 115
TGS +++ IG+ V++ R
Sbjct: 73 TGSTIITSIGRIVLLLR 89
>gi|420375643|ref|ZP_14875491.1| RNA-binding protein YhbY [Shigella flexneri 1235-66]
gi|391311582|gb|EIQ69217.1| RNA-binding protein YhbY [Shigella flexneri 1235-66]
Length = 97
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKI------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V+ + TG+ V IG+T++++RP+
Sbjct: 53 TEDRETKTLIVEAIVRETGACNVQVIGKTLVLHRPT 88
>gi|347753135|ref|YP_004860700.1| RNA-binding, CRM domain-containing protein [Bacillus coagulans
36D1]
gi|347585653|gb|AEP01920.1| RNA-binding, CRM domain-containing protein [Bacillus coagulans
36D1]
Length = 96
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + +V E LEA EL+KI + + C +
Sbjct: 2 LTGKQKRFLRAKAHHLSPIFQ---VGKGGVNENMVKQVQEALEARELIKISVLQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ V L E + +V IG T+++Y+ S
Sbjct: 59 DTVAAALAEGARAELVQIIGNTIVLYKES 87
>gi|432733938|ref|ZP_19968763.1| RNA-binding protein YhbY [Escherichia coli KTE45]
gi|432761024|ref|ZP_19995514.1| RNA-binding protein YhbY [Escherichia coli KTE46]
gi|431272846|gb|ELF63945.1| RNA-binding protein YhbY [Escherichia coli KTE45]
gi|431306331|gb|ELF94644.1| RNA-binding protein YhbY [Escherichia coli KTE46]
Length = 97
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKI------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V+ + G+ V IG+T+++YRP+
Sbjct: 53 TEDRETKTLIVEAIVREAGACNVQVIGKTLVLYRPT 88
>gi|167758149|ref|ZP_02430276.1| hypothetical protein CLOSCI_00487 [Clostridium scindens ATCC 35704]
gi|167664046|gb|EDS08176.1| RNA-binding protein, YhbY family [Clostridium scindens ATCC 35704]
Length = 96
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A ++ + +GK+ +T + + E L+A EL+KI + + C +
Sbjct: 1 MTTKQRAYLKSLAMTMDPIFQ---IGKNSMTPELTKAVTEALQARELIKISVLKNCADDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
D+ + + T S VV IG+ +++Y+
Sbjct: 58 RDLADMMADRTKSQVVQVIGKKIVLYK 84
>gi|317493618|ref|ZP_07952039.1| CRS1/YhbY domain-containing protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|365836759|ref|ZP_09378146.1| RNA-binding protein, YhbY family [Hafnia alvei ATCC 51873]
gi|316918561|gb|EFV39899.1| CRS1/YhbY domain-containing protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|364563441|gb|EHM41250.1| RNA-binding protein, YhbY family [Hafnia alvei ATCC 51873]
Length = 97
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L K+K+ L S AH L ++ +G +G+T+GV+ + L +EL+K+KI E
Sbjct: 2 NLNNKQKQHLKSLAHPLKPVVQ---LGNNGLTEGVLAEIEQALAHHELIKVKI----AAE 54
Query: 88 LEDVVKQLEEA----TGSAVVSQIGQTVIIYRPSLTR 120
D + +A TG+ V IG ++IYRPS R
Sbjct: 55 ERDTKTLIADAIVRETGACQVQLIGNVLVIYRPSQER 91
>gi|257417043|ref|ZP_05594037.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257158871|gb|EEU88831.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
Length = 103
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL K+K+ L S AH L + VGK G+ D ++T E LE EL+KI + +
Sbjct: 2 KLRGKQKRYLRSQAHHLQPIFQ---VGKGGLNDAMITQIDEALEKRELIKITLLQNTDEV 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E+V ++L A VV IG+ +I+++PS
Sbjct: 59 AEEVAEELTAAIHCDVVQIIGRVLILFKPS 88
>gi|160938940|ref|ZP_02086291.1| hypothetical protein CLOBOL_03834 [Clostridium bolteae ATCC
BAA-613]
gi|158437903|gb|EDP15663.1| hypothetical protein CLOBOL_03834 [Clostridium bolteae ATCC
BAA-613]
Length = 99
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L A ++ + +GKS +T + + E LEA EL+K+ + + C +
Sbjct: 1 MTSKQRAYLKGLAMNIDPVFQ---IGKSSLTPEITQAVDEALEARELIKVTVLKNCLDDG 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ L E T S VV IG+ +++YRP+
Sbjct: 58 GSIADVLAERTHSQVVQVIGRKIVLYRPA 86
>gi|238896687|ref|YP_002921432.1| RNA-binding protein YhbY [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|288933392|ref|YP_003437451.1| hypothetical protein Kvar_0509 [Klebsiella variicola At-22]
gi|290511557|ref|ZP_06550926.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
gi|365144116|ref|ZP_09348503.1| RNA-binding protein YhbY [Klebsiella sp. 4_1_44FAA]
gi|378980888|ref|YP_005229029.1| hypothetical protein KPHS_47290 [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|419764862|ref|ZP_14291101.1| hypothetical protein UUU_38320 [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|421911635|ref|ZP_16341388.1| FIG004454: RNA binding protein [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421919458|ref|ZP_16348960.1| FIG004454: RNA binding protein [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|425074676|ref|ZP_18477779.1| RNA-binding protein YhbY [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|425083371|ref|ZP_18486468.1| RNA-binding protein YhbY [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|425085312|ref|ZP_18488405.1| RNA-binding protein YhbY [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|425093495|ref|ZP_18496579.1| RNA-binding protein YhbY [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|444354520|ref|YP_007390664.1| FIG004454: RNA binding protein [Enterobacter aerogenes EA1509E]
gi|238549014|dbj|BAH65365.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|288888121|gb|ADC56439.1| protein of unknown function UPF0044 [Klebsiella variicola At-22]
gi|289776550|gb|EFD84549.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
gi|363648582|gb|EHL87740.1| RNA-binding protein YhbY [Klebsiella sp. 4_1_44FAA]
gi|364520299|gb|AEW63427.1| hypothetical protein KPHS_47290 [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397741990|gb|EJK89209.1| hypothetical protein UUU_38320 [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|405594879|gb|EKB68269.1| RNA-binding protein YhbY [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|405598572|gb|EKB71774.1| RNA-binding protein YhbY [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|405607344|gb|EKB80313.1| RNA-binding protein YhbY [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|405611040|gb|EKB83829.1| RNA-binding protein YhbY [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|410114539|emb|CCM84013.1| FIG004454: RNA binding protein [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410118309|emb|CCM91585.1| FIG004454: RNA binding protein [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|443905350|emb|CCG33124.1| FIG004454: RNA binding protein [Enterobacter aerogenes EA1509E]
Length = 110
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + L +EL+K+KI
Sbjct: 15 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALGHHELIKVKIASEDRET 71
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 72 KALIVEAIVRETGACNVQVIGKTLVLYRPT 101
>gi|401563934|ref|ZP_10804864.1| RNA-binding protein, YhbY family [Selenomonas sp. FOBRC6]
gi|400189345|gb|EJO23444.1| RNA-binding protein, YhbY family [Selenomonas sp. FOBRC6]
Length = 99
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
++GK GVT VV S E ++ EL+K+++ + P E ED + L E + +V IG+
Sbjct: 26 MIGKEGVTPTVVASAREAIKKRELIKVRVLQNAPDEPEDAITVLAERADANLVQVIGRNG 85
Query: 112 IIYRPSLTRMKLE 124
+++R + + ++E
Sbjct: 86 LLFRRNFDKPRIE 98
>gi|420214054|ref|ZP_14719334.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH05005]
gi|420216204|ref|ZP_14721420.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH05001]
gi|394283976|gb|EJE28137.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH05005]
gi|394292294|gb|EJE36053.1| RNA-binding protein, YhbY family [Staphylococcus epidermidis
NIH05001]
Length = 97
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K+K+ L S AH++ + +GK G+ + ++ ETLE EL+KI I + +
Sbjct: 2 LIGKQKRYLRSLAHNIDPTFQ---IGKGGINENMIQQISETLEKRELIKIHILQNNFDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+D+ + + T S +V IG +++Y+ S
Sbjct: 59 KDLAAIVSQQTQSELVQIIGSMIVLYKES 87
>gi|197118277|ref|YP_002138704.1| RNA-binding protein YhbY [Geobacter bemidjiensis Bem]
gi|253700932|ref|YP_003022121.1| hypothetical protein GM21_2315 [Geobacter sp. M21]
gi|197087637|gb|ACH38908.1| RNA-binding protein YhbY [Geobacter bemidjiensis Bem]
gi|251775782|gb|ACT18363.1| protein of unknown function UPF0044 [Geobacter sp. M21]
Length = 100
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + H L ++ VGKS V++ ++ E L ++EL+K+K+ +C +
Sbjct: 2 LTGKQKRFLRALGHGLKPVIQ---VGKSDVSEALIRETGEALASHELIKVKVLESCMMDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V ++L A + + +G+T+++Y+P+
Sbjct: 59 HSVAEELCNACQADLAQVLGRTLLLYKPA 87
>gi|375089691|ref|ZP_09736016.1| YhbY family putative RNA-binding protein [Facklamia languida CCUG
37842]
gi|374566538|gb|EHR37777.1| YhbY family putative RNA-binding protein [Facklamia languida CCUG
37842]
Length = 105
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK G+T+ + L EL+K + + E+++V +QL E + VV IG T I
Sbjct: 25 IGKLGLTEVFIQQVEAALNKRELVKFNVLQNSDEEIKEVAQQLSEVLQAVVVQTIGNTAI 84
Query: 113 IYRPS 117
+YRPS
Sbjct: 85 LYRPS 89
>gi|422412978|ref|ZP_16489937.1| probable RNA-binding protein YqeI, partial [Listeria innocua FSL
S4-378]
gi|313618866|gb|EFR90740.1| probable RNA-binding protein YqeI [Listeria innocua FSL S4-378]
Length = 82
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
VGK V+ ++ E LEA EL+KI I + C + + V +++ G+ +V IG+T+I
Sbjct: 9 VGKGSVSPNLIIQVKEALEARELIKISILQNCEEDKQTVAEKISTRAGADIVQVIGRTII 68
Query: 113 IYRPSLTRMKL 123
+Y+ S+ + ++
Sbjct: 69 LYKQSVNKQQI 79
>gi|378582085|ref|ZP_09830725.1| hypothetical protein CKS_4895 [Pantoea stewartii subsp. stewartii
DC283]
gi|377815400|gb|EHT98515.1| hypothetical protein CKS_4895 [Pantoea stewartii subsp. stewartii
DC283]
Length = 97
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L S AH L ++G +G+T+GV+ L +EL+K+K+
Sbjct: 2 NLSTKQKQHLKSLAHPLKP---VVMLGGNGLTEGVLAEIEHALGHHELIKVKVASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ +V + TG+ V IG+T+++YRP+
Sbjct: 59 RQLIVDAIVRETGAVNVQLIGKTLVLYRPA 88
>gi|262042739|ref|ZP_06015893.1| RNA-binding protein YhbY [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|329997733|ref|ZP_08302901.1| RNA-binding protein, YhbY family [Klebsiella sp. MS 92-3]
gi|259039964|gb|EEW41081.1| RNA-binding protein YhbY [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328538922|gb|EGF64981.1| RNA-binding protein, YhbY family [Klebsiella sp. MS 92-3]
Length = 116
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + L +EL+K+KI
Sbjct: 21 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALGHHELIKVKIASEDRET 77
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 78 KALIVEAIVRETGACNVQVIGKTLVLYRPT 107
>gi|212696200|ref|ZP_03304328.1| hypothetical protein ANHYDRO_00736 [Anaerococcus hydrogenalis DSM
7454]
gi|212676829|gb|EEB36436.1| hypothetical protein ANHYDRO_00736 [Anaerococcus hydrogenalis DSM
7454]
Length = 95
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T KE+ L S AH L + +GK+ +TD V+ + E LE EL+KIKI +
Sbjct: 2 ITGKERSYLKSLAHDLKPIIN---IGKNSLTDEVIEAIDEALEKRELIKIKILNNNLDDN 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
++V + E VS +G IYR S K+
Sbjct: 59 NEIVDEAIEKLNCEFVSHLGNIFTIYRESKNNKKI 93
>gi|410671297|ref|YP_006923668.1| hypothetical protein Mpsy_2094 [Methanolobus psychrophilus R15]
gi|409170425|gb|AFV24300.1| hypothetical protein Mpsy_2094 [Methanolobus psychrophilus R15]
Length = 86
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV---VKQLEEATGSAVVSQIGQ 109
+GK+G+TD VV + ++A L+KIK+ +T P E EDV ++L E TG+ ++ G
Sbjct: 22 IGKNGITDAVVEEVKKQVKAYRLVKIKMLKTTP-EGEDVKEAAQKLAEVTGTTLIEVRGS 80
Query: 110 TVIIYR 115
TV++YR
Sbjct: 81 TVVLYR 86
>gi|358466359|ref|ZP_09176189.1| hypothetical protein HMPREF9093_00659 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069109|gb|EHI79057.1| hypothetical protein HMPREF9093_00659 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 99
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 41 AHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATG 100
AH+L ++ +GK G+ ++ S ++ +E+ EL+K+KI + C E + +L +
Sbjct: 13 AHNLEAIVR---IGKDGLNQNIIQSILDAIESRELIKVKILQNCEEEKTIIYSKLMDNKE 69
Query: 101 SAVVSQIGQTVIIYRPS 117
VV IG+T+II++ +
Sbjct: 70 FEVVGMIGRTIIIFKEN 86
>gi|452124834|ref|ZP_21937418.1| hypothetical protein F783_04580 [Bordetella holmesii F627]
gi|452128231|ref|ZP_21940810.1| hypothetical protein H558_04591 [Bordetella holmesii H558]
gi|451924064|gb|EMD74205.1| hypothetical protein F783_04580 [Bordetella holmesii F627]
gi|451926446|gb|EMD76582.1| hypothetical protein H558_04591 [Bordetella holmesii H558]
Length = 202
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P+ +LT +E+ +L S AH L + L+G +G+TD V+ L ++EL+K++
Sbjct: 1 MPILELTSRERGDLRSAAHPLKPVV---LIGDAGLTDAVLKEIDRALNSHELIKVRAGGE 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E ++ + + A V +G+ I++RPS
Sbjct: 58 DRDTREAMLASICDTLSCAPVHHLGKLFILFRPS 91
>gi|424931590|ref|ZP_18349962.1| RNA-binding protein, YhbY family [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|407805777|gb|EKF77028.1| RNA-binding protein, YhbY family [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
Length = 116
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + L +EL+K+KI
Sbjct: 21 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALGHHELIKVKIASEDRET 77
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 78 KALIVEAIVRETGACNVQVIGKTLVLYRPT 107
>gi|283788182|ref|YP_003368047.1| hypothetical protein ROD_46411 [Citrobacter rodentium ICC168]
gi|282951636|emb|CBG91336.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
Length = 110
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 15 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRET 71
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+V + TG+ V IG+ +++YRP
Sbjct: 72 KTLIVDAIVRETGACNVQVIGKMLVLYRP 100
>gi|30248541|ref|NP_840611.1| hypothetical protein NE0526 [Nitrosomonas europaea ATCC 19718]
gi|30138427|emb|CAD84437.1| Uncharacterized protein family UPF0044 [Nitrosomonas europaea ATCC
19718]
Length = 126
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L + ++++LA+ AH L + +GK G+T+ V+ +L +EL+K+K+ +
Sbjct: 4 LDMAQRRQLAASAHHLNPTVT---IGKDGLTENVIGELDRSLLKHELIKVKVLDGDRDQR 60
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++Q+ + +A V QIG+ +IIYR
Sbjct: 61 ASLLEQICLSLNAAPVEQIGRVLIIYR 87
>gi|354599200|ref|ZP_09017217.1| RNA-binding, CRM domain [Brenneria sp. EniD312]
gi|353677135|gb|EHD23168.1| RNA-binding, CRM domain [Brenneria sp. EniD312]
Length = 97
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L ++G +G+T+GV+ + LE +EL+K+K+
Sbjct: 2 NLSNKQKQHLKGLAHPLKP---VVMLGNNGLTEGVLAEIEQALEHHELIKVKVASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + TG+ V IG T+++YRP+
Sbjct: 59 KTLIIDAIIRETGAGNVQVIGHTLVLYRPA 88
>gi|373118088|ref|ZP_09532224.1| hypothetical protein HMPREF0995_03060 [Lachnospiraceae bacterium
7_1_58FAA]
gi|371667652|gb|EHO32771.1| hypothetical protein HMPREF0995_03060 [Lachnospiraceae bacterium
7_1_58FAA]
Length = 107
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ LT K++ +L A+S+ L VGK G+ D +V + LEA EL+K K+
Sbjct: 1 MEDLTSKQRAQLRGLANSIDTILH---VGKDGIGDNLVKQADDALEARELIKGKVLENSL 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + L AT S VV IG ++YRP+
Sbjct: 58 LSSREAAEALASATRSQVVQVIGTKFVLYRPT 89
>gi|261378831|ref|ZP_05983404.1| CRS1 / YhbY domain protein [Neisseria cinerea ATCC 14685]
gi|269144810|gb|EEZ71228.1| CRS1 / YhbY domain protein [Neisseria cinerea ATCC 14685]
Length = 94
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLNTKEILELKARAHHLNPVV---MVGQQGLTDSVIRETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + +V IG+ ++++R ++
Sbjct: 62 RIEICNALCEAVDAQLVQHIGKLLVLWRKNI 92
>gi|169632636|ref|YP_001706372.1| RNA-binding protein [Acinetobacter baumannii SDF]
gi|169794968|ref|YP_001712761.1| RNA-binding protein [Acinetobacter baumannii AYE]
gi|184159246|ref|YP_001847585.1| RNA-binding protein [Acinetobacter baumannii ACICU]
gi|213157621|ref|YP_002320419.1| hypothetical protein AB57_3098 [Acinetobacter baumannii AB0057]
gi|215482519|ref|YP_002324707.1| CRS1 / YhbY domain protein [Acinetobacter baumannii AB307-0294]
gi|239503385|ref|ZP_04662695.1| CRS1 / YhbY domain protein [Acinetobacter baumannii AB900]
gi|260549220|ref|ZP_05823440.1| RNA-binding protein [Acinetobacter sp. RUH2624]
gi|260556450|ref|ZP_05828668.1| RNA-binding protein [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|301346066|ref|ZP_07226807.1| putative RNA-binding protein [Acinetobacter baumannii AB056]
gi|301511494|ref|ZP_07236731.1| putative RNA-binding protein [Acinetobacter baumannii AB058]
gi|301595417|ref|ZP_07240425.1| putative RNA-binding protein [Acinetobacter baumannii AB059]
gi|332855127|ref|ZP_08435710.1| RNA-binding protein, YhbY family [Acinetobacter baumannii 6013150]
gi|332868235|ref|ZP_08438077.1| RNA-binding protein, YhbY family [Acinetobacter baumannii 6013113]
gi|332876153|ref|ZP_08443935.1| RNA-binding protein, YhbY family [Acinetobacter baumannii 6014059]
gi|384132940|ref|YP_005515552.1| RNA binding protein [Acinetobacter baumannii 1656-2]
gi|384144358|ref|YP_005527068.1| putative RNA-binding protein [Acinetobacter baumannii MDR-ZJ06]
gi|385238687|ref|YP_005800026.1| RNA-binding protein [Acinetobacter baumannii TCDC-AB0715]
gi|387122830|ref|YP_006288712.1| putative RNA-binding protein [Acinetobacter baumannii MDR-TJ]
gi|403674598|ref|ZP_10936845.1| RNA binding protein [Acinetobacter sp. NCTC 10304]
gi|407933832|ref|YP_006849475.1| RNA-binding protein [Acinetobacter baumannii TYTH-1]
gi|416145189|ref|ZP_11600306.1| RNA-binding protein [Acinetobacter baumannii AB210]
gi|417550494|ref|ZP_12201573.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-18]
gi|417555453|ref|ZP_12206522.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-81]
gi|417561872|ref|ZP_12212751.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC137]
gi|417564010|ref|ZP_12214884.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC143]
gi|417569338|ref|ZP_12220196.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC189]
gi|417572873|ref|ZP_12223727.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Canada
BC-5]
gi|417575633|ref|ZP_12226481.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-17]
gi|417870480|ref|ZP_12515445.1| CRS1 / YhbY domain protein [Acinetobacter baumannii ABNIH1]
gi|417874522|ref|ZP_12519373.1| CRS1 / YhbY domain protein [Acinetobacter baumannii ABNIH2]
gi|417877457|ref|ZP_12522159.1| CRS1 / YhbY domain protein [Acinetobacter baumannii ABNIH3]
gi|417884482|ref|ZP_12528679.1| CRS1 / YhbY domain protein [Acinetobacter baumannii ABNIH4]
gi|421198737|ref|ZP_15655902.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC109]
gi|421204931|ref|ZP_15662041.1| RNA-binding protein [Acinetobacter baumannii AC12]
gi|421454637|ref|ZP_15903984.1| RNA-binding protein, YhbY family [Acinetobacter baumannii IS-123]
gi|421536784|ref|ZP_15983013.1| RNA-binding protein [Acinetobacter baumannii AC30]
gi|421622626|ref|ZP_16063526.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC074]
gi|421626484|ref|ZP_16067313.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC098]
gi|421627899|ref|ZP_16068695.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC180]
gi|421632410|ref|ZP_16073066.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-13]
gi|421643278|ref|ZP_16083780.1| RNA-binding protein, YhbY family [Acinetobacter baumannii IS-235]
gi|421646613|ref|ZP_16087059.1| RNA-binding protein, YhbY family [Acinetobacter baumannii IS-251]
gi|421652688|ref|ZP_16093037.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC0162]
gi|421655530|ref|ZP_16095853.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-72]
gi|421657181|ref|ZP_16097455.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-83]
gi|421661119|ref|ZP_16101297.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC110]
gi|421673354|ref|ZP_16113296.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC065]
gi|421678828|ref|ZP_16118711.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC111]
gi|421688954|ref|ZP_16128643.1| RNA-binding protein, YhbY family [Acinetobacter baumannii IS-143]
gi|421689954|ref|ZP_16129627.1| RNA-binding protein, YhbY family [Acinetobacter baumannii IS-116]
gi|421694597|ref|ZP_16134218.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-692]
gi|421698672|ref|ZP_16138212.1| RNA-binding protein, YhbY family [Acinetobacter baumannii IS-58]
gi|421704513|ref|ZP_16143958.1| RNA binding protein [Acinetobacter baumannii ZWS1122]
gi|421708291|ref|ZP_16147670.1| RNA binding protein [Acinetobacter baumannii ZWS1219]
gi|421787356|ref|ZP_16223710.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-82]
gi|421792631|ref|ZP_16228782.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-2]
gi|421796263|ref|ZP_16232329.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-21]
gi|421799943|ref|ZP_16235929.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Canada
BC1]
gi|421805228|ref|ZP_16241118.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-A-694]
gi|421808472|ref|ZP_16244320.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC035]
gi|424051324|ref|ZP_17788856.1| hypothetical protein W9G_00013 [Acinetobacter baumannii Ab11111]
gi|424054543|ref|ZP_17792067.1| hypothetical protein W9I_02965 [Acinetobacter nosocomialis Ab22222]
gi|424058899|ref|ZP_17796390.1| hypothetical protein W9K_00013 [Acinetobacter baumannii Ab33333]
gi|424062362|ref|ZP_17799848.1| hypothetical protein W9M_03184 [Acinetobacter baumannii Ab44444]
gi|425741254|ref|ZP_18859406.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-487]
gi|425749428|ref|ZP_18867407.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-348]
gi|425752279|ref|ZP_18870196.1| RNA-binding protein, YhbY family [Acinetobacter baumannii
Naval-113]
gi|445428569|ref|ZP_21438089.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC021]
gi|445451956|ref|ZP_21444889.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-A-92]
gi|445460416|ref|ZP_21448325.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC047]
gi|445469836|ref|ZP_21451416.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC338]
gi|445477187|ref|ZP_21454162.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-78]
gi|445490409|ref|ZP_21459122.1| RNA-binding protein, YhbY family [Acinetobacter baumannii AA-014]
gi|169147895|emb|CAM85758.1| putative RNA-binding protein [Acinetobacter baumannii AYE]
gi|169151428|emb|CAP00163.1| putative RNA-binding protein [Acinetobacter baumannii]
gi|183210840|gb|ACC58238.1| predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Acinetobacter baumannii ACICU]
gi|193078153|gb|ABO13096.2| hypothetical protein A1S_2683 [Acinetobacter baumannii ATCC 17978]
gi|213056781|gb|ACJ41683.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
gi|213987499|gb|ACJ57798.1| CRS1 / YhbY domain protein [Acinetobacter baumannii AB307-0294]
gi|260407626|gb|EEX01099.1| RNA-binding protein [Acinetobacter sp. RUH2624]
gi|260409709|gb|EEX03009.1| RNA-binding protein [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|322509160|gb|ADX04614.1| RNA binding protein [Acinetobacter baumannii 1656-2]
gi|323519188|gb|ADX93569.1| RNA-binding protein [Acinetobacter baumannii TCDC-AB0715]
gi|332727630|gb|EGJ59049.1| RNA-binding protein, YhbY family [Acinetobacter baumannii 6013150]
gi|332733496|gb|EGJ64666.1| RNA-binding protein, YhbY family [Acinetobacter baumannii 6013113]
gi|332735651|gb|EGJ66696.1| RNA-binding protein, YhbY family [Acinetobacter baumannii 6014059]
gi|333367305|gb|EGK49319.1| RNA-binding protein [Acinetobacter baumannii AB210]
gi|342227872|gb|EGT92781.1| CRS1 / YhbY domain protein [Acinetobacter baumannii ABNIH1]
gi|342228736|gb|EGT93615.1| CRS1 / YhbY domain protein [Acinetobacter baumannii ABNIH2]
gi|342234267|gb|EGT98936.1| CRS1 / YhbY domain protein [Acinetobacter baumannii ABNIH4]
gi|342235653|gb|EGU00239.1| CRS1 / YhbY domain protein [Acinetobacter baumannii ABNIH3]
gi|347594851|gb|AEP07572.1| putative RNA-binding protein [Acinetobacter baumannii MDR-ZJ06]
gi|385877322|gb|AFI94417.1| putative RNA-binding protein, YhbY family [Acinetobacter baumannii
MDR-TJ]
gi|395524454|gb|EJG12543.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC137]
gi|395553561|gb|EJG19567.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC189]
gi|395555766|gb|EJG21767.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC143]
gi|395565633|gb|EJG27280.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC109]
gi|395571122|gb|EJG31781.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-17]
gi|398325574|gb|EJN41742.1| RNA-binding protein [Acinetobacter baumannii AC12]
gi|400208441|gb|EJO39411.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Canada
BC-5]
gi|400212427|gb|EJO43386.1| RNA-binding protein, YhbY family [Acinetobacter baumannii IS-123]
gi|400386319|gb|EJP49393.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-18]
gi|400391870|gb|EJP58917.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-81]
gi|404559317|gb|EKA64581.1| RNA-binding protein, YhbY family [Acinetobacter baumannii IS-143]
gi|404565458|gb|EKA70626.1| RNA-binding protein, YhbY family [Acinetobacter baumannii IS-116]
gi|404567813|gb|EKA72929.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-692]
gi|404572368|gb|EKA77412.1| RNA-binding protein, YhbY family [Acinetobacter baumannii IS-58]
gi|404664880|gb|EKB32843.1| hypothetical protein W9G_00013 [Acinetobacter baumannii Ab11111]
gi|404670643|gb|EKB38531.1| hypothetical protein W9K_00013 [Acinetobacter baumannii Ab33333]
gi|404672089|gb|EKB39929.1| hypothetical protein W9M_03184 [Acinetobacter baumannii Ab44444]
gi|407190347|gb|EKE61566.1| RNA binding protein [Acinetobacter baumannii ZWS1122]
gi|407190904|gb|EKE62119.1| RNA binding protein [Acinetobacter baumannii ZWS1219]
gi|407439292|gb|EKF45817.1| hypothetical protein W9I_02965 [Acinetobacter nosocomialis Ab22222]
gi|407902413|gb|AFU39244.1| RNA-binding protein [Acinetobacter baumannii TYTH-1]
gi|408504552|gb|EKK06299.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC0162]
gi|408508855|gb|EKK10534.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-72]
gi|408509464|gb|EKK11136.1| RNA-binding protein, YhbY family [Acinetobacter baumannii IS-235]
gi|408517325|gb|EKK18869.1| RNA-binding protein, YhbY family [Acinetobacter baumannii IS-251]
gi|408694649|gb|EKL40213.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC074]
gi|408695755|gb|EKL41310.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC098]
gi|408709290|gb|EKL54537.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-13]
gi|408709596|gb|EKL54840.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC180]
gi|408714232|gb|EKL59386.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-83]
gi|408716122|gb|EKL61242.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC110]
gi|409985297|gb|EKO41521.1| RNA-binding protein [Acinetobacter baumannii AC30]
gi|410386788|gb|EKP39255.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC065]
gi|410391918|gb|EKP44281.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC111]
gi|410399591|gb|EKP51778.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-21]
gi|410399663|gb|EKP51848.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-2]
gi|410407636|gb|EKP59618.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-82]
gi|410408803|gb|EKP60748.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Canada
BC1]
gi|410409478|gb|EKP61409.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-A-694]
gi|410415787|gb|EKP67571.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC035]
gi|425489123|gb|EKU55440.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-348]
gi|425492981|gb|EKU59229.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-487]
gi|425499225|gb|EKU65281.1| RNA-binding protein, YhbY family [Acinetobacter baumannii
Naval-113]
gi|444754873|gb|ELW79482.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-A-92]
gi|444761810|gb|ELW86188.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC021]
gi|444765672|gb|ELW89961.1| RNA-binding protein, YhbY family [Acinetobacter baumannii AA-014]
gi|444773651|gb|ELW97747.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC047]
gi|444773748|gb|ELW97840.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC338]
gi|444776694|gb|ELX00732.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-78]
gi|452946693|gb|EME52188.1| RNA-binding protein [Acinetobacter baumannii MSP4-16]
Length = 107
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L++ E+K L H L + ++G G+TD V+ + L +EL+K+KI
Sbjct: 1 MAALSIHERKRLRQIGHVLNPVV---MIGGQGLTDAVIEETLRALNDHELIKVKI----A 53
Query: 86 GELED----VVKQLEEATGSAVVSQIGQTVIIYRPS 117
GE + V+ + EATG+ V +IG+ V++Y+ +
Sbjct: 54 GEDREARAAVIDAIVEATGAEAVQKIGKIVLLYKKA 89
>gi|56707603|ref|YP_169499.1| RNA-binding protein [Francisella tularensis subsp. tularensis SCHU
S4]
gi|89256880|ref|YP_514242.1| RNA-binding protein [Francisella tularensis subsp. holarctica LVS]
gi|110670074|ref|YP_666631.1| RNA-binding protein [Francisella tularensis subsp. tularensis
FSC198]
gi|115315259|ref|YP_763982.1| RNA-binding protein [Francisella tularensis subsp. holarctica
OSU18]
gi|156503055|ref|YP_001429120.1| CRS1/YhbY domain, RNA-binding protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|187932066|ref|YP_001892051.1| RNA-binding protein [Francisella tularensis subsp. mediasiatica
FSC147]
gi|254368155|ref|ZP_04984175.1| RNA-binding protein [Francisella tularensis subsp. holarctica 257]
gi|254369754|ref|ZP_04985764.1| RNA-binding protein [Francisella tularensis subsp. holarctica
FSC022]
gi|254370121|ref|ZP_04986127.1| RNA-binding protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254373979|ref|ZP_04989461.1| RNA-binding protein [Francisella novicida GA99-3548]
gi|254874424|ref|ZP_05247134.1| RNA-binding protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|290953622|ref|ZP_06558243.1| RNA-binding protein [Francisella tularensis subsp. holarctica
URFT1]
gi|379716863|ref|YP_005305199.1| RNA binding protein [Francisella tularensis subsp. tularensis
TIGB03]
gi|379725467|ref|YP_005317653.1| RNA binding protein [Francisella tularensis subsp. tularensis
TI0902]
gi|385792474|ref|YP_005825450.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|385794226|ref|YP_005830632.1| hypothetical protein NE061598_02575 [Francisella tularensis subsp.
tularensis NE061598]
gi|421755092|ref|ZP_16192045.1| hypothetical protein B343_02578 [Francisella tularensis subsp.
tularensis 80700075]
gi|422939171|ref|YP_007012318.1| RNA-binding protein [Francisella tularensis subsp. holarctica
FSC200]
gi|423051252|ref|YP_007009686.1| hypothetical protein F92_08870 [Francisella tularensis subsp.
holarctica F92]
gi|54113941|gb|AAV29604.1| NT02FT1076 [synthetic construct]
gi|56604095|emb|CAG45094.1| RNA-binding protein [Francisella tularensis subsp. tularensis SCHU
S4]
gi|89144711|emb|CAJ80042.1| RNA-binding protein [Francisella tularensis subsp. holarctica LVS]
gi|110320407|emb|CAL08477.1| RNA-binding protein [Francisella tularensis subsp. tularensis
FSC198]
gi|115130158|gb|ABI83345.1| RNA-binding protein [Francisella tularensis subsp. holarctica
OSU18]
gi|134253965|gb|EBA53059.1| RNA-binding protein [Francisella tularensis subsp. holarctica 257]
gi|151568365|gb|EDN34019.1| RNA-binding protein [Francisella tularensis subsp. tularensis
FSC033]
gi|151571699|gb|EDN37353.1| RNA-binding protein [Francisella novicida GA99-3548]
gi|156253658|gb|ABU62164.1| CRS1 / YhbY domain, RNA-binding protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|157122713|gb|EDO66842.1| RNA-binding protein [Francisella tularensis subsp. holarctica
FSC022]
gi|187712975|gb|ACD31272.1| RNA-binding protein [Francisella tularensis subsp. mediasiatica
FSC147]
gi|254840423|gb|EET18859.1| RNA-binding protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158761|gb|ADA78152.1| hypothetical protein NE061598_02575 [Francisella tularensis subsp.
tularensis NE061598]
gi|328676620|gb|AEB27490.1| RNA binding protein [Francisella cf. novicida Fx1]
gi|377826916|gb|AFB80164.1| RNA binding protein [Francisella tularensis subsp. tularensis
TI0902]
gi|377828540|gb|AFB78619.1| RNA binding protein [Francisella tularensis subsp. tularensis
TIGB03]
gi|407294322|gb|AFT93228.1| RNA-binding protein [Francisella tularensis subsp. holarctica
FSC200]
gi|409088966|gb|EKM89021.1| hypothetical protein B343_02578 [Francisella tularensis subsp.
tularensis 80700075]
gi|421951974|gb|AFX71223.1| hypothetical protein F92_08870 [Francisella tularensis subsp.
holarctica F92]
Length = 92
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+ VK++++L + AHSL + L+G+ G+T+ V+ L +++L+K+K+ R E
Sbjct: 1 MDVKQQQKLKAQAHSLKPVV---LMGEKGLTENVILEIDLALASHQLIKVKVGRLPKEEK 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + ++ +AT S +V IG +++YR
Sbjct: 58 QQIASEITQATRSELVQIIGNILVLYR 84
>gi|338812029|ref|ZP_08624228.1| hypothetical protein ALO_08043 [Acetonema longum DSM 6540]
gi|337275998|gb|EGO64436.1| hypothetical protein ALO_08043 [Acetonema longum DSM 6540]
Length = 98
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S + ++ +GK+GVT VV L A EL+K+++ P E+
Sbjct: 2 LTTKQKRYLKSLGMTQDPIVQ---IGKAGVTATVVAGTEAALLARELIKVRVLNNSPQEV 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR--PSLTRMKLE 124
++ +++L TG+ +V IG ++Y+ P R KLE
Sbjct: 59 KEAIQELAIETGAQLVQVIGHNGLLYKQNPDPERSKLE 96
>gi|315282394|ref|ZP_07870815.1| probable RNA-binding protein YqeI, partial [Listeria marthii FSL
S4-120]
gi|313613962|gb|EFR87685.1| probable RNA-binding protein YqeI [Listeria marthii FSL S4-120]
Length = 91
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 33 EKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVV 92
+K+ L AH++ + VGK V+ ++ E LE EL+KI I + C + + V
Sbjct: 1 QKRFLRKEAHNIQPIFQ---VGKGSVSPNLIIHVKEALEVRELIKISILQNCEEDKQTVA 57
Query: 93 KQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
+++ +G+ +V IG+T+I+Y+ S+ + ++
Sbjct: 58 EKISARSGADIVQVIGRTIILYKTSVNKPQI 88
>gi|445401829|ref|ZP_21430448.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-57]
gi|444782915|gb|ELX06788.1| RNA-binding protein, YhbY family [Acinetobacter baumannii Naval-57]
Length = 107
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L++ E+K L H L + ++G G+TD V+ + L +EL+K+KI
Sbjct: 1 MAALSIHERKRLRQIGHVLNPVV---MIGGQGLTDAVIEETLRALNDHELIKVKI----A 53
Query: 86 GELED----VVKQLEEATGSAVVSQIGQTVIIYRPS 117
GE + V+ + EATG+ V +IG+ V++Y+ +
Sbjct: 54 GEDREARTAVIDAIVEATGAEAVQKIGKIVLLYKKA 89
>gi|323486893|ref|ZP_08092209.1| hypothetical protein HMPREF9474_03960 [Clostridium symbiosum
WAL-14163]
gi|323691937|ref|ZP_08106187.1| hypothetical protein HMPREF9475_01050 [Clostridium symbiosum
WAL-14673]
gi|355627961|ref|ZP_09049514.1| hypothetical protein HMPREF1020_03593 [Clostridium sp. 7_3_54FAA]
gi|323399756|gb|EGA92138.1| hypothetical protein HMPREF9474_03960 [Clostridium symbiosum
WAL-14163]
gi|323503995|gb|EGB19807.1| hypothetical protein HMPREF9475_01050 [Clostridium symbiosum
WAL-14673]
gi|354820016|gb|EHF04446.1| hypothetical protein HMPREF1020_03593 [Clostridium sp. 7_3_54FAA]
Length = 98
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+ VT + T+ E LEA EL+K+ I + C + ++ L E T S VV IG+ ++
Sbjct: 22 IGKASVTPELTTAVAEALEARELIKLSILKNCMDDGNEIASVLAERTQSQVVQVIGKKIV 81
Query: 113 IYR 115
+Y+
Sbjct: 82 LYK 84
>gi|413958462|ref|ZP_11397701.1| hypothetical protein BURK_001005 [Burkholderia sp. SJ98]
gi|413941042|gb|EKS73002.1| hypothetical protein BURK_001005 [Burkholderia sp. SJ98]
Length = 178
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P KL+ E+ +L S AH+L + LVG G+TD V+ LEA++L+K+++
Sbjct: 1 MPALKLSPAERADLRSQAHALKPVV---LVGAEGLTDAVLKEINVHLEAHQLIKVRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
++ ++ + +A + IG+ ++I+RP
Sbjct: 58 EREARVEIYDEICDRLNAAPIQHIGKLLVIWRP 90
>gi|340752541|ref|ZP_08689340.1| hypothetical protein FSAG_00396 [Fusobacterium sp. 2_1_31]
gi|422317052|ref|ZP_16398421.1| YhbY family putative RNA-binding protein [Fusobacterium
periodonticum D10]
gi|229422339|gb|EEO37386.1| hypothetical protein FSAG_00396 [Fusobacterium sp. 2_1_31]
gi|404590269|gb|EKA92719.1| YhbY family putative RNA-binding protein [Fusobacterium
periodonticum D10]
Length = 99
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 41 AHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATG 100
AH+L ++ +GK G+ ++ S ++ +E+ EL+K+KI + C E + +L +
Sbjct: 13 AHNLEAIVR---IGKDGLNQNIIQSILDAIESRELIKVKILQNCEEEKTVIYSKLMDNKE 69
Query: 101 SAVVSQIGQTVIIYRPS 117
VV IG+T+II++ +
Sbjct: 70 FEVVGMIGRTIIIFKEN 86
>gi|421906596|ref|ZP_16336489.1| CRS1 / YhbY domain protein [Neisseria meningitidis alpha704]
gi|393292344|emb|CCI72430.1| CRS1 / YhbY domain protein [Neisseria meningitidis alpha704]
Length = 106
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 17 KLNTKEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAE 73
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + ++ IG+ ++++R ++
Sbjct: 74 RVEICNALCEAVDAQLIQHIGKLLVLWRKNI 104
>gi|146296585|ref|YP_001180356.1| hypothetical protein [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145410161|gb|ABP67165.1| protein of unknown function UPF0044 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 95
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ +L A+++ ++ +GK G+T+ V+ E L A EL+KI + + C E
Sbjct: 2 LTSKQRAKLRGMANTMDAIIR---IGKEGITERVLKQIDEALTARELIKIALEKNCEIEP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + + E + V IG+ ++IYR S
Sbjct: 59 KEAIAYICEKLNAEPVQVIGRKIVIYRMS 87
>gi|77165114|ref|YP_343639.1| hypothetical protein Noc_1637 [Nitrosococcus oceani ATCC 19707]
gi|254434103|ref|ZP_05047611.1| CRS1 / YhbY domain superfamily [Nitrosococcus oceani AFC27]
gi|76883428|gb|ABA58109.1| Protein of unknown function UPF0044 [Nitrosococcus oceani ATCC
19707]
gi|207090436|gb|EDZ67707.1| CRS1 / YhbY domain superfamily [Nitrosococcus oceani AFC27]
Length = 96
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L + AHSL + +VG+SG+T V+ +LE +EL+KIK+H E
Sbjct: 3 LTKNQTRYLRTLAHSLKPVV---IVGQSGITKAVLDEIAGSLEHHELIKIKMHDAEREER 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++K + + T + +V IG+ I YR
Sbjct: 60 SAMIKHVLQVTQAELVQVIGRIGIFYR 86
>gi|374997472|ref|YP_004972971.1| RNA-binding protein [Desulfosporosinus orientis DSM 765]
gi|357215838|gb|AET70456.1| putative RNA-binding protein, YhbY family [Desulfosporosinus
orientis DSM 765]
Length = 97
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 40 YAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEA 98
+ ++G ++ L VGK G+T+ VV E + A EL+K ++ + C E + V +L E
Sbjct: 9 FLRAMGNEMVPILQVGKGGITEMVVQQTNEAIAARELIKGRVLQNCIEEPKTVAAELAEQ 68
Query: 99 TGSAVVSQIGQTVIIYRPS 117
TGS +V IG+ +++R S
Sbjct: 69 TGSELVQVIGRNFLLFRQS 87
>gi|355575459|ref|ZP_09044959.1| hypothetical protein HMPREF1008_00936 [Olsenella sp. oral taxon 809
str. F0356]
gi|354817614|gb|EHF02117.1| hypothetical protein HMPREF1008_00936 [Olsenella sp. oral taxon 809
str. F0356]
Length = 99
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+LT ++ ++L S A+ L + VGK+G+TD VV LEANEL+K + T +
Sbjct: 2 ELTGRQIRQLRSMANRLEATIG---VGKAGITDAVVRQTDSALEANELVKCSVQGTSGMD 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ L T + VV IG ++YR S
Sbjct: 59 THEAAIALARPTHAEVVQVIGHKFVLYRTS 88
>gi|325846604|ref|ZP_08169519.1| RNA-binding protein, YhbY family [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481362|gb|EGC84403.1| RNA-binding protein, YhbY family [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 95
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T KE+ L S AH L + +GK+ +TD V+ + E LE EL+KIKI +
Sbjct: 2 ITGKERSYLKSLAHDLKPIIN---IGKNSLTDEVIEAIDEALEKRELIKIKILNNNLDDN 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + E VS +G IYR S
Sbjct: 59 NEIIDEAIEKLNCEFVSHLGNIFTIYRES 87
>gi|257865893|ref|ZP_05645546.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257872226|ref|ZP_05651879.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257875520|ref|ZP_05655173.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|325569903|ref|ZP_08145897.1| RNA-binding protein YhbY [Enterococcus casseliflavus ATCC 12755]
gi|257799827|gb|EEV28879.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257806390|gb|EEV35212.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257809686|gb|EEV38506.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|325157026|gb|EGC69194.1| RNA-binding protein YhbY [Enterococcus casseliflavus ATCC 12755]
Length = 103
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L S AH L + +GK G+ D ++ E LE EL+K+ + + ++
Sbjct: 6 KQKRFLRSEAHHLNPIFQ---IGKGGLNDAMMAQIEEALEKRELIKVSLLQNTDEVADEA 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + E G VV IG+ +++++PS
Sbjct: 63 AETIREKVGCEVVQIIGRVIVLFKPS 88
>gi|417546576|ref|ZP_12197662.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC032]
gi|421667297|ref|ZP_16107370.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC087]
gi|421670297|ref|ZP_16110299.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC099]
gi|400384464|gb|EJP43142.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC032]
gi|410384995|gb|EKP37491.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC087]
gi|410385664|gb|EKP38149.1| RNA-binding protein, YhbY family [Acinetobacter baumannii OIFC099]
Length = 107
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L++ E+K L H L + ++G G+TD V+ + L +EL+K+KI
Sbjct: 1 MAALSIHERKRLRQIGHVLNPVV---MIGGQGLTDAVIEETLRALNDHELIKVKI----A 53
Query: 86 GELED----VVKQLEEATGSAVVSQIGQTVIIYRPS 117
GE + V+ + EATG+ V +IG+ V++Y+ +
Sbjct: 54 GEDREVRAAVIDAIVEATGAEAVQKIGKIVLLYKKA 89
>gi|358063907|ref|ZP_09150504.1| hypothetical protein HMPREF9473_02567 [Clostridium hathewayi
WAL-18680]
gi|356697855|gb|EHI59418.1| hypothetical protein HMPREF9473_02567 [Clostridium hathewayi
WAL-18680]
Length = 97
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A + + +GKS VT + + E LEA EL+K+ + + C +
Sbjct: 1 MTTKQRAYLKSLAMKMDPIFQ---IGKSSVTPELTAAIAEALEARELIKLSVLKNCMDDG 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + L E T S VV IG+ +++Y+
Sbjct: 58 RSIAEVLAERTHSEVVQVIGKKIVLYK 84
>gi|313668720|ref|YP_004049004.1| hypothetical protein NLA_14290 [Neisseria lactamica 020-06]
gi|421863049|ref|ZP_16294750.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379378|emb|CBX21945.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006182|emb|CBN87644.1| hypothetical protein NLA_14290 [Neisseria lactamica 020-06]
Length = 94
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLNTKEILELKARAHHLNPVV---MVGQQGLTDSVIRETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + ++ IG+ ++++R ++
Sbjct: 62 RVEICNALCEAVDAQLIQHIGKLLVLWRKNI 92
>gi|113868417|ref|YP_726906.1| RNA-binding protein [Ralstonia eutropha H16]
gi|339326471|ref|YP_004686164.1| KH domain RNA-binding protein [Cupriavidus necator N-1]
gi|113527193|emb|CAJ93538.1| Predicted RNA-binding protein containing KH domain [Ralstonia
eutropha H16]
gi|338166628|gb|AEI77683.1| KH domain RNA-binding protein [Cupriavidus necator N-1]
Length = 167
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +L ++ +L S AH+L + +VG G+T V+ +L A++L+KI++
Sbjct: 1 MPALQLVPAQRSDLRSRAHALNPVV---MVGAEGLTRAVLAEIDRSLAAHDLIKIRVF-- 55
Query: 84 CPGELED----VVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRK 137
G+ D + +++ + +A + IG+ ++++RP R+K + + R R+
Sbjct: 56 --GDDRDARIAIYEEICDQLSAAPIQHIGKLLVVWRPGEARLKENQAEDLGRHTPARR 111
>gi|392961649|ref|ZP_10327104.1| RNA-binding, CRM domain-containing protein [Pelosinus fermentans
DSM 17108]
gi|421055563|ref|ZP_15518525.1| RNA-binding, CRM domain-containing protein [Pelosinus fermentans
B4]
gi|421061175|ref|ZP_15523540.1| RNA-binding, CRM domain-containing protein [Pelosinus fermentans
B3]
gi|421064078|ref|ZP_15525994.1| RNA-binding, CRM domain-containing protein [Pelosinus fermentans
A12]
gi|421072651|ref|ZP_15533760.1| RNA-binding, CRM domain-containing protein [Pelosinus fermentans
A11]
gi|392439328|gb|EIW17039.1| RNA-binding, CRM domain-containing protein [Pelosinus fermentans
B4]
gi|392445851|gb|EIW23162.1| RNA-binding, CRM domain-containing protein [Pelosinus fermentans
A11]
gi|392450917|gb|EIW27918.1| RNA-binding, CRM domain-containing protein [Pelosinus fermentans
B3]
gi|392453489|gb|EIW30365.1| RNA-binding, CRM domain-containing protein [Pelosinus fermentans
DSM 17108]
gi|392461757|gb|EIW37912.1| RNA-binding, CRM domain-containing protein [Pelosinus fermentans
A12]
Length = 105
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ Y SLG + + +GK+G++ ++ S + L A EL+K+++ + C
Sbjct: 7 LTGKQKR----YLRSLGSTMDPVVQIGKTGMSASLLDSTKDALFARELIKVRVLQNCSEA 62
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYR 115
++++ QL EA G+ +V IG+ ++Y+
Sbjct: 63 PKEIIAQLAEAAGAELVQVIGRNGLLYK 90
>gi|262369448|ref|ZP_06062776.1| RNA-binding protein [Acinetobacter johnsonii SH046]
gi|381198193|ref|ZP_09905532.1| CRS1 / YhbY domain protein [Acinetobacter lwoffii WJ10621]
gi|262315516|gb|EEY96555.1| RNA-binding protein [Acinetobacter johnsonii SH046]
Length = 107
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+++E+K L H+L ++G SG+T+ VV + L +EL+K+KI
Sbjct: 1 MATLSIQERKRLRQIGHALNP---VVMLGGSGLTENVVEEILRALNDHELIKVKIAGEDR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E ++ ++ TG+ +V IG+ ++Y+ +
Sbjct: 58 EERAAIIAEIASTTGAEIVQTIGKIALLYKKA 89
>gi|262068266|ref|ZP_06027878.1| putative RNA-binding protein YqeI [Fusobacterium periodonticum ATCC
33693]
gi|291378004|gb|EFE85522.1| putative RNA-binding protein YqeI [Fusobacterium periodonticum ATCC
33693]
Length = 99
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 41 AHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATG 100
AH+L ++ +GK G+ ++ S ++ +E+ EL+K+KI + C E V +L +
Sbjct: 13 AHNLEAIVR---IGKDGLNQNIIQSILDAIESRELIKVKILQNCEEEKTVVYSKLIDNKE 69
Query: 101 SAVVSQIGQTVIIYRPS 117
VV IG+T+II++ +
Sbjct: 70 FEVVGMIGRTIIIFKEN 86
>gi|322419235|ref|YP_004198458.1| hypothetical protein GM18_1718 [Geobacter sp. M18]
gi|320125622|gb|ADW13182.1| protein of unknown function UPF0044 [Geobacter sp. M18]
Length = 98
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + H L ++ VGKS V++ ++ E L ++EL+K+K+ +C +
Sbjct: 2 LTGKQKRFLRALGHGLKPVIQ---VGKSDVSEALIRETGEALASHELIKVKVLESCMMDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V ++L A + + +G+T+++Y+P+
Sbjct: 59 HSVAEELCAACEAELAQVLGRTLLLYKPA 87
>gi|163790554|ref|ZP_02184983.1| hypothetical protein CAT7_08235 [Carnobacterium sp. AT7]
gi|159874157|gb|EDP68232.1| hypothetical protein CAT7_08235 [Carnobacterium sp. AT7]
Length = 104
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ L S AH L + +GK+G+ V+ E LE EL+K+ + +
Sbjct: 2 NLTGKQKRFLRSKAHHLNPIFQ---IGKNGLNKEVIVQINEALEKRELIKVGLLQNTDEV 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+DV LE+ G V IG+ +++++ S
Sbjct: 59 AQDVADALEKEIGCNAVQVIGRVIVLFKKS 88
>gi|429736108|ref|ZP_19270026.1| CRS1 / YhbY domain protein [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429156228|gb|EKX98865.1| CRS1 / YhbY domain protein [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 81
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
++GK GVT VV S E ++ EL+K+++ + P E ED + L E + +V IG+
Sbjct: 8 MIGKEGVTPTVVASAREAIKKRELIKVRVLQNAPDEPEDAITVLAERADANLVQVIGRNG 67
Query: 112 IIYRPSLTRMKLE 124
+++R + + ++E
Sbjct: 68 LLFRRNFDKPRIE 80
>gi|29377338|ref|NP_816492.1| hypothetical protein EF2872 [Enterococcus faecalis V583]
gi|227554295|ref|ZP_03984342.1| RNA-binding protein [Enterococcus faecalis HH22]
gi|229544805|ref|ZP_04433530.1| RNA-binding protein [Enterococcus faecalis TX1322]
gi|229549020|ref|ZP_04437745.1| RNA-binding protein [Enterococcus faecalis ATCC 29200]
gi|255971789|ref|ZP_05422375.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255974787|ref|ZP_05425373.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256616684|ref|ZP_05473530.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256763434|ref|ZP_05504014.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256854160|ref|ZP_05559525.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256958093|ref|ZP_05562264.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256960941|ref|ZP_05565112.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256963920|ref|ZP_05568091.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257079981|ref|ZP_05574342.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|257081575|ref|ZP_05575936.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257087774|ref|ZP_05582135.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257091096|ref|ZP_05585457.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257420197|ref|ZP_05597191.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257421577|ref|ZP_05598567.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293382470|ref|ZP_06628405.1| putative RNA-binding protein YqeI [Enterococcus faecalis R712]
gi|293387146|ref|ZP_06631707.1| putative RNA-binding protein YqeI [Enterococcus faecalis S613]
gi|294779515|ref|ZP_06744910.1| RNA-binding protein, YhbY family [Enterococcus faecalis PC1.1]
gi|300860983|ref|ZP_07107070.1| RNA-binding protein, YhbY family [Enterococcus faecalis TUSoD Ef11]
gi|307268319|ref|ZP_07549700.1| hypothetical protein TIGR00253 [Enterococcus faecalis TX4248]
gi|307272111|ref|ZP_07553374.1| hypothetical protein TIGR00253 [Enterococcus faecalis TX0855]
gi|307276171|ref|ZP_07557302.1| hypothetical protein TIGR00253 [Enterococcus faecalis TX2134]
gi|307280577|ref|ZP_07561625.1| hypothetical protein TIGR00253 [Enterococcus faecalis TX0860]
gi|307286840|ref|ZP_07566922.1| hypothetical protein TIGR00253 [Enterococcus faecalis TX0109]
gi|307289800|ref|ZP_07569736.1| hypothetical protein TIGR00253 [Enterococcus faecalis TX0411]
gi|312901411|ref|ZP_07760688.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0470]
gi|312904376|ref|ZP_07763537.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0635]
gi|312906525|ref|ZP_07765527.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
DAPTO 512]
gi|312910470|ref|ZP_07769316.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
DAPTO 516]
gi|312951125|ref|ZP_07770030.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0102]
gi|384514139|ref|YP_005709232.1| RNA-binding protein [Enterococcus faecalis OG1RF]
gi|384519604|ref|YP_005706909.1| CRS1 / YhbY domain protein [Enterococcus faecalis 62]
gi|397701048|ref|YP_006538836.1| CRS1 / YhbY domain protein [Enterococcus faecalis D32]
gi|421512807|ref|ZP_15959602.1| RNA binding protein [Enterococcus faecalis ATCC 29212]
gi|422684472|ref|ZP_16742708.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX4000]
gi|422690219|ref|ZP_16748277.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0630]
gi|422691067|ref|ZP_16749106.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0031]
gi|422693690|ref|ZP_16751698.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX4244]
gi|422697539|ref|ZP_16755475.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX1346]
gi|422699647|ref|ZP_16757510.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX1342]
gi|422702220|ref|ZP_16760058.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX1302]
gi|422706088|ref|ZP_16763793.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0043]
gi|422709129|ref|ZP_16766642.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0027]
gi|422712678|ref|ZP_16769441.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0309A]
gi|422716478|ref|ZP_16773182.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0309B]
gi|422719673|ref|ZP_16776304.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0017]
gi|422723395|ref|ZP_16779931.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX2137]
gi|422726076|ref|ZP_16782531.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0312]
gi|422727774|ref|ZP_16784204.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0012]
gi|422731149|ref|ZP_16787524.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0645]
gi|422734051|ref|ZP_16790348.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX1341]
gi|422738397|ref|ZP_16793594.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX2141]
gi|424671901|ref|ZP_18108888.1| RNA-binding protein, YhbY family [Enterococcus faecalis 599]
gi|428767962|ref|YP_007154073.1| RNA-binding protein, CRM domain containing [Enterococcus faecalis
str. Symbioflor 1]
gi|430359131|ref|ZP_19425747.1| hypothetical protein OG1X_1121 [Enterococcus faecalis OG1X]
gi|430370882|ref|ZP_19429289.1| hypothetical protein EFM7_2056 [Enterococcus faecalis M7]
gi|29344805|gb|AAO82562.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
V583]
gi|227176585|gb|EEI57557.1| RNA-binding protein [Enterococcus faecalis HH22]
gi|229305813|gb|EEN71809.1| RNA-binding protein [Enterococcus faecalis ATCC 29200]
gi|229310077|gb|EEN76064.1| RNA-binding protein [Enterococcus faecalis TX1322]
gi|255962807|gb|EET95283.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255967659|gb|EET98281.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256596211|gb|EEU15387.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256684685|gb|EEU24380.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256711103|gb|EEU26146.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256948589|gb|EEU65221.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256951437|gb|EEU68069.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256954416|gb|EEU71048.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256988011|gb|EEU75313.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|256989605|gb|EEU76907.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256995804|gb|EEU83106.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256999908|gb|EEU86428.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257162025|gb|EEU91985.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257163401|gb|EEU93361.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291080154|gb|EFE17518.1| putative RNA-binding protein YqeI [Enterococcus faecalis R712]
gi|291083417|gb|EFE20380.1| putative RNA-binding protein YqeI [Enterococcus faecalis S613]
gi|294453394|gb|EFG21801.1| RNA-binding protein, YhbY family [Enterococcus faecalis PC1.1]
gi|300850022|gb|EFK77772.1| RNA-binding protein, YhbY family [Enterococcus faecalis TUSoD Ef11]
gi|306499134|gb|EFM68613.1| hypothetical protein TIGR00253 [Enterococcus faecalis TX0411]
gi|306502055|gb|EFM71341.1| hypothetical protein TIGR00253 [Enterococcus faecalis TX0109]
gi|306503943|gb|EFM73160.1| hypothetical protein TIGR00253 [Enterococcus faecalis TX0860]
gi|306507165|gb|EFM76304.1| hypothetical protein TIGR00253 [Enterococcus faecalis TX2134]
gi|306511227|gb|EFM80234.1| hypothetical protein TIGR00253 [Enterococcus faecalis TX0855]
gi|306515345|gb|EFM83879.1| hypothetical protein TIGR00253 [Enterococcus faecalis TX4248]
gi|310627468|gb|EFQ10751.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
DAPTO 512]
gi|310630901|gb|EFQ14184.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0102]
gi|310632275|gb|EFQ15558.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0635]
gi|311289242|gb|EFQ67798.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
DAPTO 516]
gi|311291487|gb|EFQ70043.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0470]
gi|315026559|gb|EFT38491.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX2137]
gi|315030786|gb|EFT42718.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX4000]
gi|315033122|gb|EFT45054.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0017]
gi|315036288|gb|EFT48220.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0027]
gi|315145750|gb|EFT89766.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX2141]
gi|315148845|gb|EFT92861.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX4244]
gi|315151731|gb|EFT95747.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0012]
gi|315154135|gb|EFT98151.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0031]
gi|315156472|gb|EFU00489.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0043]
gi|315159002|gb|EFU03019.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0312]
gi|315162817|gb|EFU06834.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0645]
gi|315166302|gb|EFU10319.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX1302]
gi|315169159|gb|EFU13176.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX1341]
gi|315171885|gb|EFU15902.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX1342]
gi|315173919|gb|EFU17936.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX1346]
gi|315575233|gb|EFU87424.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0309B]
gi|315576863|gb|EFU89054.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0630]
gi|315582407|gb|EFU94598.1| conserved hypothetical protein TIGR00253 [Enterococcus faecalis
TX0309A]
gi|323481737|gb|ADX81176.1| CRS1 / YhbY domain protein [Enterococcus faecalis 62]
gi|327536028|gb|AEA94862.1| RNA-binding protein [Enterococcus faecalis OG1RF]
gi|397337687|gb|AFO45359.1| CRS1 / YhbY domain protein [Enterococcus faecalis D32]
gi|401674072|gb|EJS80435.1| RNA binding protein [Enterococcus faecalis ATCC 29212]
gi|402357869|gb|EJU92566.1| RNA-binding protein, YhbY family [Enterococcus faecalis 599]
gi|427186135|emb|CCO73359.1| RNA-binding protein, CRM domain containing [Enterococcus faecalis
str. Symbioflor 1]
gi|429513486|gb|ELA03067.1| hypothetical protein OG1X_1121 [Enterococcus faecalis OG1X]
gi|429515247|gb|ELA04765.1| hypothetical protein EFM7_2056 [Enterococcus faecalis M7]
Length = 103
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL K+K+ L S AH L + VGK G+ D ++T E LE EL+KI + +
Sbjct: 2 KLRGKQKRYLRSQAHHLQPIFQ---VGKGGLNDAMITQIDEALEKRELIKITLLQNTDEV 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E+V ++L A VV IG+ +++++PS
Sbjct: 59 AEEVAEELTAAIHCDVVQIIGRVLVLFKPS 88
>gi|160880679|ref|YP_001559647.1| hypothetical protein Cphy_2547 [Clostridium phytofermentans ISDg]
gi|160429345|gb|ABX42908.1| protein of unknown function UPF0044 [Clostridium phytofermentans
ISDg]
Length = 96
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
VGK+ ++ + T E LE EL+KI + + C + ++ L E T S VV IG+ ++
Sbjct: 22 VGKASISPELTTGISEALEKRELIKISVLKNCLDDPREIASVLSERTHSEVVQVIGKKIV 81
Query: 113 IYRPSLTRMKLE 124
+YR S + K+E
Sbjct: 82 LYRESKEKKKIE 93
>gi|302872050|ref|YP_003840686.1| hypothetical protein COB47_1410 [Caldicellulosiruptor obsidiansis
OB47]
gi|302574909|gb|ADL42700.1| protein of unknown function UPF0044 [Caldicellulosiruptor
obsidiansis OB47]
Length = 95
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ +L A+++ ++ +GK G+T+ V+ E L A EL+KI + + C E
Sbjct: 2 LTSKQRAKLRGMANTMDAIIR---IGKEGITERVLRQIDEALTARELIKIALEKNCEIEP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + + E + V IG+ ++IYR S
Sbjct: 59 REAITYICEKLNAEPVQVIGRKIVIYRMS 87
>gi|152972104|ref|YP_001337250.1| hypothetical protein KPN_03590 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206578269|ref|YP_002236408.1| RNA-binding protein [Klebsiella pneumoniae 342]
gi|336247365|ref|YP_004591075.1| hypothetical protein EAE_04335 [Enterobacter aerogenes KCTC 2190]
gi|386036736|ref|YP_005956649.1| hypothetical protein KPN2242_21025 [Klebsiella pneumoniae KCTC
2242]
gi|419972250|ref|ZP_14487679.1| hypothetical protein KPNIH1_02821 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419978245|ref|ZP_14493542.1| hypothetical protein KPNIH2_04114 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419986111|ref|ZP_14501246.1| hypothetical protein KPNIH4_14600 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419989201|ref|ZP_14504178.1| hypothetical protein KPNIH5_00985 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419995329|ref|ZP_14510136.1| hypothetical protein KPNIH6_02661 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420001310|ref|ZP_14515966.1| hypothetical protein KPNIH7_03757 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420007152|ref|ZP_14521647.1| hypothetical protein KPNIH8_04079 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420013033|ref|ZP_14527345.1| hypothetical protein KPNIH9_04379 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420018756|ref|ZP_14532952.1| hypothetical protein KPNIH10_04368 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420026308|ref|ZP_14540311.1| hypothetical protein KPNIH11_13286 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420029682|ref|ZP_14543511.1| hypothetical protein KPNIH12_01180 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420037482|ref|ZP_14551136.1| hypothetical protein KPNIH14_11953 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041274|ref|ZP_14554771.1| hypothetical protein KPNIH16_02106 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420047472|ref|ZP_14560789.1| hypothetical protein KPNIH17_04384 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420052746|ref|ZP_14565926.1| hypothetical protein KPNIH18_02176 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420060293|ref|ZP_14573294.1| hypothetical protein KPNIH19_11574 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420064928|ref|ZP_14577736.1| hypothetical protein KPNIH20_05823 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420072106|ref|ZP_14584747.1| hypothetical protein KPNIH21_13207 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420076838|ref|ZP_14589307.1| hypothetical protein KPNIH22_07788 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420081973|ref|ZP_14594276.1| hypothetical protein KPNIH23_04541 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|424832573|ref|ZP_18257301.1| putative RNA-binding protein [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|428932302|ref|ZP_19005882.1| hypothetical protein MTE1_06101 [Klebsiella pneumoniae JHCK1]
gi|428939388|ref|ZP_19012498.1| hypothetical protein MTE2_07615 [Klebsiella pneumoniae VA360]
gi|449051949|ref|ZP_21732139.1| hypothetical protein G057_10181 [Klebsiella pneumoniae hvKP1]
gi|150956953|gb|ABR78983.1| hypothetical protein KPN_03590 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206567327|gb|ACI09103.1| putative RNA-binding protein [Klebsiella pneumoniae 342]
gi|334733421|gb|AEG95796.1| hypothetical protein EAE_04335 [Enterobacter aerogenes KCTC 2190]
gi|339763864|gb|AEK00085.1| hypothetical protein KPN2242_21025 [Klebsiella pneumoniae KCTC
2242]
gi|397349074|gb|EJJ42170.1| hypothetical protein KPNIH4_14600 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397352078|gb|EJJ45159.1| hypothetical protein KPNIH1_02821 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397352528|gb|EJJ45607.1| hypothetical protein KPNIH2_04114 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397368082|gb|EJJ60690.1| hypothetical protein KPNIH6_02661 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397370033|gb|EJJ62625.1| hypothetical protein KPNIH5_00985 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397372201|gb|EJJ64697.1| hypothetical protein KPNIH7_03757 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397380944|gb|EJJ73122.1| hypothetical protein KPNIH9_04379 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397385264|gb|EJJ77368.1| hypothetical protein KPNIH8_04079 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397389999|gb|EJJ81921.1| hypothetical protein KPNIH10_04368 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397395438|gb|EJJ87144.1| hypothetical protein KPNIH11_13286 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397402893|gb|EJJ94488.1| hypothetical protein KPNIH12_01180 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397405413|gb|EJJ96876.1| hypothetical protein KPNIH14_11953 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397417258|gb|EJK08427.1| hypothetical protein KPNIH17_04384 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397418881|gb|EJK10035.1| hypothetical protein KPNIH16_02106 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397424878|gb|EJK15766.1| hypothetical protein KPNIH18_02176 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397432766|gb|EJK23423.1| hypothetical protein KPNIH20_05823 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397434154|gb|EJK24794.1| hypothetical protein KPNIH19_11574 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397439592|gb|EJK30031.1| hypothetical protein KPNIH21_13207 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397446794|gb|EJK37002.1| hypothetical protein KPNIH22_07788 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397452700|gb|EJK42767.1| hypothetical protein KPNIH23_04541 [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|414710016|emb|CCN31720.1| putative RNA-binding protein [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426304077|gb|EKV66230.1| hypothetical protein MTE2_07615 [Klebsiella pneumoniae VA360]
gi|426307188|gb|EKV69274.1| hypothetical protein MTE1_06101 [Klebsiella pneumoniae JHCK1]
gi|448876090|gb|EMB11089.1| hypothetical protein G057_10181 [Klebsiella pneumoniae hvKP1]
Length = 97
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + L +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALGHHELIKVKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + TG+ V IG+T+++YRP+
Sbjct: 59 KALIVEAIVRETGACNVQVIGKTLVLYRPT 88
>gi|56460085|ref|YP_155366.1| RNA-binding protein [Idiomarina loihiensis L2TR]
gi|56179095|gb|AAV81817.1| Predicted RNA-binding protein containing KH domain [Idiomarina
loihiensis L2TR]
Length = 98
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 11/93 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L + L+G +G+T+GV+ + L+ +EL+KIK+ P E
Sbjct: 3 LSNKQKQHLKGLAHPLKPVV---LLGANGLTEGVLAEIEQALDHHELIKIKV----PEED 55
Query: 89 EDVVKQLE----EATGSAVVSQIGQTVIIYRPS 117
++ KQ+ TG+A V IG+T +IYR +
Sbjct: 56 RELRKQIMATIVHETGAAEVQIIGKTQVIYRAA 88
>gi|418322696|ref|ZP_12934010.1| RNA-binding protein, YhbY family [Staphylococcus pettenkoferi
VCU012]
gi|365231143|gb|EHM72202.1| RNA-binding protein, YhbY family [Staphylococcus pettenkoferi
VCU012]
Length = 97
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH++ + +GK+G+ + +V + LE EL+K+ I + +
Sbjct: 2 LTGKQKRYLRSLAHNIEPTFQ---IGKAGINENMVEQLKDILEKRELIKVHILQNNFEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ L E T S +V IG +++Y+ S
Sbjct: 59 KELAANLSELTESELVQVIGSMIVLYKAS 87
>gi|254489969|ref|ZP_05103164.1| conserved hypothetical protein TIGR00253 [Methylophaga thiooxidans
DMS010]
gi|224465054|gb|EEF81308.1| conserved hypothetical protein TIGR00253 [Methylophaga thiooxydans
DMS010]
Length = 97
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K+K+ L AH+L + ++G SG+TD V++ LE +EL+K+++ +
Sbjct: 3 VTDKQKRYLRGLAHTLKPVV---MIGNSGLTDAVLSEIDNALEHHELIKVRVSGQERADR 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ ++ TG+ +V IG YRP+
Sbjct: 60 KAMLDEISNKTGADLVQVIGHIGGFYRPA 88
>gi|166031865|ref|ZP_02234694.1| hypothetical protein DORFOR_01566 [Dorea formicigenerans ATCC
27755]
gi|346306250|ref|ZP_08848410.1| hypothetical protein HMPREF9457_00119 [Dorea formicigenerans
4_6_53AFAA]
gi|166028318|gb|EDR47075.1| RNA-binding protein, YhbY family [Dorea formicigenerans ATCC 27755]
gi|345902916|gb|EGX72688.1| hypothetical protein HMPREF9457_00119 [Dorea formicigenerans
4_6_53AFAA]
Length = 96
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L A ++ + +GKS +T + E LEA EL+KI + + C +
Sbjct: 1 MTTKQRAYLKGLAMTMDPIFQ---IGKSSMTPEFTKAIAEALEARELIKISVLKNCADDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++ L E T S VV IG+ +++Y+
Sbjct: 58 KELASMLAERTHSQVVQVIGKKIVLYK 84
>gi|50085897|ref|YP_047407.1| hypothetical protein ACIAD2855 [Acinetobacter sp. ADP1]
gi|49531873|emb|CAG69585.1| putative RNA-binding protein [Acinetobacter sp. ADP1]
Length = 108
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+++E+K L H+L + ++G G+T+GV+ L +EL+KIKI
Sbjct: 1 MAALSIQERKRLRQIGHALNPVV---MIGGQGLTEGVIEEANRALTDHELIKIKIAGEDR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYR------PSLTRM 121
V+ +L + TG+ V +IG+ V++Y+ P+L+ +
Sbjct: 58 ETRAQVIDELVQVTGAEAVQKIGKIVLLYKKAAKQNPNLSNL 99
>gi|121605507|ref|YP_982836.1| hypothetical protein Pnap_2613 [Polaromonas naphthalenivorans CJ2]
gi|120594476|gb|ABM37915.1| protein of unknown function UPF0044 [Polaromonas naphthalenivorans
CJ2]
Length = 158
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTC-PG 86
+LT ++K+ + AH L + ++G G+TDGV L A+ L+K+++ PG
Sbjct: 5 QLTPAQRKDHRAEAHHLNPVV---MIGSDGLTDGVKKEIDAALNAHGLIKVRVQSDDRPG 61
Query: 87 ELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E++ + L E +A + IG+ ++ +RP
Sbjct: 62 R-EEMFRSLAEELDAAPIQHIGKLLVFWRP 90
>gi|57339888|gb|AAW49931.1| hypothetical protein FTT0461 [synthetic construct]
Length = 127
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
++ VK++++L + AHSL + L+G+ G+T+ V+ L +++L+K+K+ R E
Sbjct: 26 EMDVKQQQKLKAQAHSLKPVV---LMGEKGLTENVILEIDLALASHQLIKVKVGRLPKEE 82
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + ++ +AT S +V IG +++YR
Sbjct: 83 KQQIASEITQATRSELVQIIGNILVLYR 110
>gi|313901191|ref|ZP_07834679.1| RNA-binding protein, YhbY family [Clostridium sp. HGF2]
gi|346314271|ref|ZP_08855792.1| hypothetical protein HMPREF9022_01449 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|373121440|ref|ZP_09535308.1| YhbY family putative RNA-binding protein [Erysipelotrichaceae
bacterium 21_3]
gi|422327455|ref|ZP_16408482.1| YhbY family putative RNA-binding protein [Erysipelotrichaceae
bacterium 6_1_45]
gi|312954149|gb|EFR35829.1| RNA-binding protein, YhbY family [Clostridium sp. HGF2]
gi|345906629|gb|EGX76353.1| hypothetical protein HMPREF9022_01449 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|371663295|gb|EHO28485.1| YhbY family putative RNA-binding protein [Erysipelotrichaceae
bacterium 6_1_45]
gi|371665458|gb|EHO30623.1| YhbY family putative RNA-binding protein [Erysipelotrichaceae
bacterium 21_3]
Length = 94
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K EL A + +K Q+ GK +++ ++ + ++LEA+EL+K+ + +TC
Sbjct: 2 LTGKQKSELRGIAQT--RKPLFQM-GKDAISENLIKTISDSLEAHELVKVSLLKTCAITA 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + AT S VV IG+T +YR S
Sbjct: 59 NEAAVTISAATHSEVVQVIGRTFTLYRRS 87
>gi|357056925|ref|ZP_09117935.1| hypothetical protein HMPREF9467_04907 [Clostridium clostridioforme
2_1_49FAA]
gi|355379278|gb|EHG26443.1| hypothetical protein HMPREF9467_04907 [Clostridium clostridioforme
2_1_49FAA]
Length = 99
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GKS +T + + E LEA EL+K+ + + C + + L E T S VV IG+ ++
Sbjct: 22 IGKSSLTPELTQAVDEALEARELIKVTVLKNCLDDGGSIADVLAERTHSQVVQVIGRKIV 81
Query: 113 IYRPS 117
+YRP+
Sbjct: 82 LYRPA 86
>gi|300718586|ref|YP_003743389.1| RNA-binding protein [Erwinia billingiae Eb661]
gi|299064422|emb|CAX61542.1| RNA-binding protein [Erwinia billingiae Eb661]
Length = 97
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKP---VVMLGNNGLTEGVLAEIEQALEHHELIKVKIATEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
VV+ + T +A V IG+ +++YRP+
Sbjct: 59 KALVVEAIVRETKAANVQVIGKMLVLYRPT 88
>gi|118579618|ref|YP_900868.1| hypothetical protein Ppro_1188 [Pelobacter propionicus DSM 2379]
gi|118502328|gb|ABK98810.1| protein of unknown function UPF0044 [Pelobacter propionicus DSM
2379]
Length = 105
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + HSL ++ +GK + + ++ LE +EL+K+K+ +C +
Sbjct: 2 LTGKQKRHLRALGHSLKPIIQ---IGKKEIEEALINEVNAALEHHELIKVKLLESCMLDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLT 119
+ + L A + V +G+T ++YRP+ T
Sbjct: 59 HESSEMLARACNAQVAQILGRTFLLYRPAET 89
>gi|225378064|ref|ZP_03755285.1| hypothetical protein ROSEINA2194_03724 [Roseburia inulinivorans DSM
16841]
gi|225210065|gb|EEG92419.1| hypothetical protein ROSEINA2194_03724 [Roseburia inulinivorans DSM
16841]
Length = 99
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K++ L S A ++ + +GK+ +T ++ E LE EL+KI + + C +
Sbjct: 2 NLTSKQRAYLGSEASTMNAIFQ---IGKASLTPELINGLDEALEKRELIKISVLKNCADD 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ + + E T S VV IG+ +I++R
Sbjct: 59 PREIAEIIAERTHSVVVKVIGKKIILFR 86
>gi|406671274|ref|ZP_11078513.1| hypothetical protein HMPREF9706_00773 [Facklamia hominis CCUG
36813]
gi|405580524|gb|EKB54583.1| hypothetical protein HMPREF9706_00773 [Facklamia hominis CCUG
36813]
Length = 106
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK G+T+ + LE EL+K + + E++ V +++ + T + VV IG T +
Sbjct: 25 MGKQGLTEAFIEQIDSALEKRELIKFNLLQNTSEEIDQVTERIAQTTQAHVVHVIGSTAV 84
Query: 113 IYRPS 117
+YRPS
Sbjct: 85 LYRPS 89
>gi|238026782|ref|YP_002911013.1| CRS1/YhbY domain-contain protein [Burkholderia glumae BGR1]
gi|237875976|gb|ACR28309.1| CRS1/YhbY domain-contain protein [Burkholderia glumae BGR1]
Length = 181
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLAEIKVHLAAHQLIKIRVF-- 55
Query: 84 CPGELED----VVKQLEEATGSAVVSQIGQTVIIYRP 116
G+ D + + + E G+A + IG+ ++I+RP
Sbjct: 56 --GDDRDARIAIYEDICERLGAAPIQHIGKLLVIWRP 90
>gi|251798005|ref|YP_003012736.1| hypothetical protein Pjdr2_4020 [Paenibacillus sp. JDR-2]
gi|247545631|gb|ACT02650.1| protein of unknown function UPF0044 [Paenibacillus sp. JDR-2]
Length = 103
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK G D +V E +E EL+KI + C +
Sbjct: 2 LTGKQKRHLRSLAHHLQPIFQ---VGKGGTNDQLVRHIEEAIEVRELIKISVLNNCMDDP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ ++ EA G+ +V IG+T+++Y+ +
Sbjct: 59 REIGAEVAEAAGAELVQVIGKTIVLYKQA 87
>gi|120611283|ref|YP_970961.1| hypothetical protein Aave_2615 [Acidovorax citrulli AAC00-1]
gi|120589747|gb|ABM33187.1| protein of unknown function UPF0044 [Acidovorax citrulli AAC00-1]
Length = 158
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT E++E + AH L + ++G G+T V L A+ L+K++I
Sbjct: 1 MPQIQLTPAERREHRANAHHLDPVV---MIGGDGLTAAVQKEVDAALSAHGLIKVRILGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL--EEKKQQARRVYVRKESK 140
E + +QL + +A + IG+ ++++RP + + K E++ R V V K SK
Sbjct: 58 DRAAREQIYQQLADELNAAPIQHIGKLIVLWRPPVKKDKAIDEDRMPGPRDVKVLKFSK 116
>gi|117919470|ref|YP_868662.1| hypothetical protein Shewana3_1021 [Shewanella sp. ANA-3]
gi|117611802|gb|ABK47256.1| protein of unknown function UPF0044 [Shewanella sp. ANA-3]
Length = 99
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ L AH+L L+G +G+T+GV+ L +EL+K+K+ T E
Sbjct: 2 NLTTKQKQHLKGLAHNLKP---VVLLGANGLTEGVLAEIESALAYHELIKVKVAST-DRE 57
Query: 88 LED-VVKQLEEATGSAVVSQIGQTVIIYRPS 117
L++ +V + T SA V IG ++IYR S
Sbjct: 58 LKNAIVDAIVRETQSAKVQLIGHILVIYRQS 88
>gi|414564750|ref|YP_006043711.1| RNA binding protein [Streptococcus equi subsp. zooepidemicus ATCC
35246]
gi|338847815|gb|AEJ26027.1| RNA binding protein [Streptococcus equi subsp. zooepidemicus ATCC
35246]
Length = 102
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L + A+SL ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 2 LTSKQRAFLKAEAYSLKPIVQ---IGKNGLNDQIKTSIRQALDARELIKVTLLQNTDETI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+++ S
Sbjct: 59 HEVAEILEEEIGCDTVLKIGRILILFKVS 87
>gi|118602156|ref|YP_903371.1| hypothetical protein Rmag_0104 [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567095|gb|ABL01900.1| protein of unknown function UPF0044 [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 100
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ KLT +KK L S HSL +VG+ G+++ V+ T+E +ELLKIKI
Sbjct: 1 MIKLTNNQKKFLRSKGHSLEP---IVMVGQHGLSESVLVELKATMEKHELLKIKIRIDKR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
E + ++ ++ + +V IG V+IYR
Sbjct: 58 EEKQKIIAKIISIYNAYLVQVIGNIVVIYR 87
>gi|337755800|ref|YP_004648311.1| RNA binding protein [Francisella sp. TX077308]
gi|336447405|gb|AEI36711.1| RNA binding protein [Francisella sp. TX077308]
Length = 92
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+ VK++++L + AHSL L+G+ G+T+ V+ L ++EL+K+K R E
Sbjct: 1 MDVKQQQKLKAQAHSLKP---VVLMGEKGLTENVMLEIDLALASHELIKVKAGRLPKEEK 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ +++ +AT S +V IG +++YR +
Sbjct: 58 QEIAEEIVKATKSEIVQIIGNILVLYRHN 86
>gi|387824837|ref|YP_005824308.1| RNA binding protein [Francisella cf. novicida 3523]
gi|332184303|gb|AEE26557.1| RNA binding protein [Francisella cf. novicida 3523]
Length = 92
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+ VK++++L + AHSL + L+G+ G+T+ V+ L +++L+K+K R E
Sbjct: 1 MDVKQQQKLKAQAHSLNPVV---LMGEKGLTENVILEIDLALASHQLIKVKAGRLPKEEK 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + ++ +AT S +V IG +++YR
Sbjct: 58 QRIASEITQATRSELVQIIGNIIVLYR 84
>gi|119944571|ref|YP_942251.1| hypothetical protein Ping_0809 [Psychromonas ingrahamii 37]
gi|119863175|gb|ABM02652.1| hypothetical protein UPF0044 [Psychromonas ingrahamii 37]
Length = 110
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ K+K+ L AHSL + L+G++G+T+GV+ L +EL+KIK+
Sbjct: 14 KLSNKQKQYLKGLAHSLKPVV---LLGQNGLTEGVLAEIENALSHHELIKIKVSSDDRET 70
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T + +++IG V+++RPS
Sbjct: 71 KQLIIDAIVRETEALNITKIGHIVVLFRPS 100
>gi|257869177|ref|ZP_05648830.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|357050060|ref|ZP_09111272.1| hypothetical protein HMPREF9478_01255 [Enterococcus saccharolyticus
30_1]
gi|257803341|gb|EEV32163.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|355382230|gb|EHG29331.1| hypothetical protein HMPREF9478_01255 [Enterococcus saccharolyticus
30_1]
Length = 103
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L S AH L + +GK G+ + ++ E LE EL+K+ + + ED
Sbjct: 6 KQKRFLRSEAHHLTPIFQ---IGKGGLNEAMINQIEEALEKRELIKVSLLQNTDEVAEDA 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ EA VV IG+ +++++PS
Sbjct: 63 ATAISEAIQCEVVQIIGRVIVLFKPS 88
>gi|421527050|ref|ZP_15973655.1| RNA binding protein [Fusobacterium nucleatum ChDC F128]
gi|402256779|gb|EJU07256.1| RNA binding protein [Fusobacterium nucleatum ChDC F128]
Length = 99
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+ K++ L AH+L ++ +GK G+ +V S ++ + + EL+K+KI + C E
Sbjct: 1 MNSKKRAFLKKKAHNLEPIVR---IGKDGLNQNIVQSILDAIASRELIKVKILQNCEEEK 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ +L + VV IG+T+II++ +
Sbjct: 58 TVIYSKLMDINDFEVVGMIGRTIIIFKEN 86
>gi|357167767|ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 1053
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 19 PSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKI 78
PS + L LP+ E + L L K+LK VGK GVT+G+V E EL+KI
Sbjct: 133 PSAAELTLPR---DELRRLQGVGIRLRKRLK---VGKPGVTEGIVNGIHERWRNVELVKI 186
Query: 79 KIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + + LE TG V+ + G T+I+YR
Sbjct: 187 RCDDVSAMNMRRTHEILERKTGGLVIWRSGSTIILYR 223
>gi|330719332|ref|ZP_08313932.1| RNA-binding protein [Leuconostoc fallax KCTC 3537]
Length = 104
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ +L+ K+K+ L S A+++ VGK+G+T V + L EL+K+ + ++
Sbjct: 1 MIQLSGKQKRFLRSQANTMNPIFS---VGKNGMTQTWVDEIVVALNKRELVKVNVQQSAD 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLT 119
+++V + +E+ + VV IG+T+++Y P++
Sbjct: 58 VTVKEVAQYIEDHSNITVVQTIGKTLVLYLPAIN 91
>gi|416197376|ref|ZP_11618586.1| CRS1 / YhbY domain protein [Neisseria meningitidis CU385]
gi|325140048|gb|EGC62577.1| CRS1 / YhbY domain protein [Neisseria meningitidis CU385]
Length = 106
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 17 KLNTKEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAE 73
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + +V IG+ ++++R ++
Sbjct: 74 RIEICTALCEAVDAQLVQHIGKLLVLWRKNI 104
>gi|302670798|ref|YP_003830758.1| hypothetical protein bpr_I1439 [Butyrivibrio proteoclasticus B316]
gi|302395271|gb|ADL34176.1| hypothetical protein bpr_I1439 [Butyrivibrio proteoclasticus B316]
Length = 103
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
+Y SL L+ +GKS V+ V+++ E+ +EL+KI + + C ++++V + E
Sbjct: 9 AYLKSLAADLEPVFQIGKSSVSPEVISAISESFNTHELIKITVLKNCLDDVKEVAITVSE 68
Query: 98 ATGSAVVSQIGQTVIIYRP 116
T S +V IG+ ++Y+P
Sbjct: 69 RTRSDLVQVIGRKFVLYKP 87
>gi|402302297|ref|ZP_10821415.1| RNA-binding protein, YhbY family [Selenomonas sp. FOBRC9]
gi|400380938|gb|EJP33745.1| RNA-binding protein, YhbY family [Selenomonas sp. FOBRC9]
Length = 99
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
++GK GV+ VVTS E ++ EL+K+++ + P E D + L E + +V IG+
Sbjct: 26 MIGKEGVSPAVVTSAREAIKKRELIKVRVLQNAPDEPVDAITMLAERADANLVQVIGRNG 85
Query: 112 IIYRPSLTRMKLE 124
+++R + + ++E
Sbjct: 86 LLFRRNFDQPRIE 98
>gi|452995706|emb|CCQ92622.1| putative RNA-binding protein [Clostridium ultunense Esp]
Length = 96
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L A+++ + VGK+G+T+ + E LEA E++KIK+ +
Sbjct: 2 LTGKQRSYLKGIANTMEPIFQ---VGKNGITNNFIKQVDEALEAREIIKIKVLNNSYLDA 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V L E+T + V IG +++YR S
Sbjct: 59 TTVAIDLAESTNAEFVQSIGNKLVLYRES 87
>gi|24372778|ref|NP_716820.1| putative RNA-binding protein YhbY [Shewanella oneidensis MR-1]
gi|113969361|ref|YP_733154.1| hypothetical protein Shewmr4_1017 [Shewanella sp. MR-4]
gi|114046588|ref|YP_737138.1| hypothetical protein Shewmr7_1082 [Shewanella sp. MR-7]
gi|24346859|gb|AAN54265.1| putative RNA-binding protein YhbY [Shewanella oneidensis MR-1]
gi|113884045|gb|ABI38097.1| protein of unknown function UPF0044 [Shewanella sp. MR-4]
gi|113888030|gb|ABI42081.1| protein of unknown function UPF0044 [Shewanella sp. MR-7]
Length = 99
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ L AH+L L+G +G+T+GV+ L +EL+K+K+ + E
Sbjct: 2 NLTTKQKQHLKGLAHNLKP---VVLLGANGLTEGVLAEIESALAYHELIKVKV-ASADRE 57
Query: 88 LED-VVKQLEEATGSAVVSQIGQTVIIYRPS 117
L++ +V + T SA V IG ++IYR S
Sbjct: 58 LKNAIVDAIVRETQSAKVQLIGHILVIYRQS 88
>gi|421563028|ref|ZP_16008850.1| RNA-binding protein YhbY [Neisseria meningitidis NM2795]
gi|402341735|gb|EJU76908.1| RNA-binding protein YhbY [Neisseria meningitidis NM2795]
Length = 94
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLNTKEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + ++ IG+ ++++R ++
Sbjct: 62 RVEICNALCEAVDAQLIQHIGKLLVLWRKNI 92
>gi|220934155|ref|YP_002513054.1| hypothetical protein Tgr7_0979 [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995465|gb|ACL72067.1| conserved hypothetical protein [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 96
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT +++K+L + AH + +VG+ G+TD V+ LE +EL+K+K++ E
Sbjct: 3 LTDRQRKQLRTLAHP---RKPIVIVGQKGLTDNVMEEINLALEHHELIKVKVNVADRDER 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
V+Q+ + TG+ +V +IG ++R +L
Sbjct: 60 SAAVEQICQQTGADLVQRIGFIATLFRRNL 89
>gi|421077533|ref|ZP_15538501.1| RNA-binding, CRM domain-containing protein [Pelosinus fermentans
JBW45]
gi|392524388|gb|EIW47546.1| RNA-binding, CRM domain-containing protein [Pelosinus fermentans
JBW45]
Length = 105
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ Y SLG + + +GK+G++ ++ S + L A EL+K+++ + C
Sbjct: 7 LTGKQKR----YLRSLGSTMDPVVQIGKTGMSASLLDSTKDALIARELIKVRVLQNCSEA 62
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYR 115
++++ QL EA G+ +V IG+ ++Y+
Sbjct: 63 PKEIIAQLAEAAGAELVQIIGRNGLLYK 90
>gi|304313978|ref|YP_003849125.1| RNA-binding protein [Methanothermobacter marburgensis str. Marburg]
gi|302587437|gb|ADL57812.1| predicted RNA-binding protein [Methanothermobacter marburgensis
str. Marburg]
Length = 87
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
VGK+GVT+ ++ L+ANEL+K++ RT E E + ++ E T S ++ G I
Sbjct: 22 VGKAGVTESLIEEVRRQLKANELIKVRFARTVASEKESYITEIVEKTNSELIDLRGNVAI 81
Query: 113 IYR 115
I++
Sbjct: 82 IFK 84
>gi|336310468|ref|ZP_08565440.1| RNA binding protein [Shewanella sp. HN-41]
gi|335866198|gb|EGM71189.1| RNA binding protein [Shewanella sp. HN-41]
Length = 99
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ L AH+L L+G +G+T+GV+ L +EL+K+K+ + E
Sbjct: 2 NLTTKQKQHLKGLAHNLKP---VVLLGANGLTEGVLAEIESALAYHELIKVKV-ASADRE 57
Query: 88 LED-VVKQLEEATGSAVVSQIGQTVIIYRPS 117
L++ +V + T SA V IG ++IYR S
Sbjct: 58 LKNAIVDAIVRETQSAKVQLIGHILVIYRQS 88
>gi|309775710|ref|ZP_07670708.1| probable RNA-binding protein YqeI [Erysipelotrichaceae bacterium
3_1_53]
gi|308916549|gb|EFP62291.1| probable RNA-binding protein YqeI [Erysipelotrichaceae bacterium
3_1_53]
Length = 120
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K EL A + K+ Q+ GK V++ ++ + ++LEA+EL+K+ + +TC
Sbjct: 2 LTGKQKSELRGIAQT--KRPLFQM-GKDAVSENLIKTISDSLEAHELVKVSLLKTCGISA 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + AT S VV IG+T +YR S
Sbjct: 59 NEAAVTISAATHSEVVQVIGRTFTLYRRS 87
>gi|334129578|ref|ZP_08503382.1| Putative RNA-binding protein [Methyloversatilis universalis FAM5]
gi|333445263|gb|EGK73205.1| Putative RNA-binding protein [Methyloversatilis universalis FAM5]
Length = 151
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT E++ L + AH L + ++ ++G+T V+ L+++EL+K+++ +
Sbjct: 4 LTPDERRALRAQAHPLKPVV---MIAQNGLTAAVLKEIELALKSHELIKVRVFDAEREQR 60
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKESK 140
+ + + EA G+A V +IG+ +++YRP+ K E + R+ + +K
Sbjct: 61 DAWLNEACEALGAAAVQRIGKILVLYRPNPELHKAAEAPKTVRKTPAKAGAK 112
>gi|326791202|ref|YP_004309023.1| RNA-binding, CRM domain-containing protein [Clostridium lentocellum
DSM 5427]
gi|326541966|gb|ADZ83825.1| RNA-binding, CRM domain protein [Clostridium lentocellum DSM 5427]
Length = 97
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
+Y SL +K + +GK+G+T V + L+A EL+KI + + C + +++ L E
Sbjct: 9 AYLKSLAQKTESIFQIGKNGLTPEVTEAVALALDARELVKISVLQNCLEDPKEMSIMLAE 68
Query: 98 ATGSAVVSQIGQTVIIYRPS 117
T S VV IG+ +++Y+P+
Sbjct: 69 RTKSVVVQVIGKKIVLYKPA 88
>gi|293609979|ref|ZP_06692281.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427423440|ref|ZP_18913593.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-136]
gi|292828431|gb|EFF86794.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425699785|gb|EKU69389.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-136]
Length = 107
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L++ E+K L H L + ++G G+TD V+ + L +EL+K+K+
Sbjct: 1 MAALSIHERKRLRQIGHVLNPVV---MIGGQGLTDAVIEETLRALNDHELIKVKV----A 53
Query: 86 GELED----VVKQLEEATGSAVVSQIGQTVIIYRPS 117
GE + V+ + EATG+ V +IG+ V++Y+ +
Sbjct: 54 GEDREARTAVIDAIVEATGAEAVQKIGKIVLLYKKA 89
>gi|227499556|ref|ZP_03929663.1| RNA binding protein [Anaerococcus tetradius ATCC 35098]
gi|227218315|gb|EEI83569.1| RNA binding protein [Anaerococcus tetradius ATCC 35098]
Length = 94
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L AH + +GK VTD ++ + E L+A EL+KIKI +
Sbjct: 2 LTGKQRAFLKQEAHDFKPIIN---IGKFSVTDDLIKAIDEALQARELIKIKILNNNMDDQ 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++++ + + T S +S +G +YR +
Sbjct: 59 DEIIDTIIDKTSSEFISHLGSIFTLYRKN 87
>gi|167751479|ref|ZP_02423606.1| hypothetical protein EUBSIR_02475 [Eubacterium siraeum DSM 15702]
gi|167655287|gb|EDR99416.1| putative RNA-binding protein, YhbY family [Eubacterium siraeum DSM
15702]
Length = 100
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+ ++D ++ + LEA EL+KI++ C +++ ++ E T S VV IG ++
Sbjct: 24 IGKNAISDELIKQLSDALEARELIKIRVLENCGYSAKELAGEIGERTNSIVVQVIGTKIV 83
Query: 113 IYRPS 117
+YR +
Sbjct: 84 LYRQN 88
>gi|21227587|ref|NP_633509.1| hypothetical protein MM_1485 [Methanosarcina mazei Go1]
gi|452210059|ref|YP_007490173.1| RNA binding protein [Methanosarcina mazei Tuc01]
gi|20905971|gb|AAM31181.1| conserved protein [Methanosarcina mazei Go1]
gi|452099961|gb|AGF96901.1| RNA binding protein [Methanosarcina mazei Tuc01]
Length = 86
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCP--GELEDVVKQLEEATGSAVVSQIGQT 110
+GK+GVTD ++ + ++AN L+K+K+ ++ +L+ + +L EAT S ++ G+T
Sbjct: 22 IGKNGVTDTLIEELNKQIKANRLVKVKVLKSAEEGKDLKTIADELAEATRSTLIDVRGRT 81
Query: 111 VIIYR 115
V++YR
Sbjct: 82 VVLYR 86
>gi|435854654|ref|YP_007315973.1| putative RNA-binding protein, YhbY family [Halobacteroides halobius
DSM 5150]
gi|433671065|gb|AGB41880.1| putative RNA-binding protein, YhbY family [Halobacteroides halobius
DSM 5150]
Length = 96
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+G+TD V+ ETLEA EL+K++ ++ +L E+ + V+ IG +
Sbjct: 22 IGKNGITDNVIEQVDETLEARELIKLRALENSLYTAKEAAYELAESCDAEVIQTIGNVFV 81
Query: 113 IYR 115
+YR
Sbjct: 82 LYR 84
>gi|34499254|ref|NP_903469.1| hypothetical protein CV_3799 [Chromobacterium violaceum ATCC 12472]
gi|34105105|gb|AAQ61461.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 160
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 12/101 (11%)
Query: 33 EKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELED-- 90
++K L AH + + +VG +G+T+ VV +L+A+EL+K+++ G+ D
Sbjct: 63 QRKYLQGLAHGIDPVV---MVGNNGLTEAVVREIAISLDAHELIKVRVL----GDDRDAR 115
Query: 91 --VVKQLEEATGSAVVSQIGQTVIIYRPSL-TRMKLEEKKQ 128
+ +Q+ + G A V IG+ ++++RPS R+ L + KQ
Sbjct: 116 IAMFEQICDELGCAPVQHIGKLLVLWRPSDKARIALPKNKQ 156
>gi|402758202|ref|ZP_10860458.1| RNA binding protein [Acinetobacter sp. NCTC 7422]
Length = 108
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L++ E+K L H+L + ++G G+T+ V+ L +EL+K+KI
Sbjct: 1 MAALSIHERKRLRQIGHALNPVV---MIGSQGLTENVIEETNRALNDHELIKVKI----A 53
Query: 86 GELED----VVKQLEEATGSAVVSQIGQTVIIYRPS 117
GE D V+ + EATG+ V +IG+ V++Y+ +
Sbjct: 54 GEDRDARGAVIDAIVEATGAESVQKIGKIVLLYKKA 89
>gi|227872368|ref|ZP_03990719.1| RNA binding protein [Oribacterium sinus F0268]
gi|227841797|gb|EEJ52076.1| RNA binding protein [Oribacterium sinus F0268]
Length = 101
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 41/65 (63%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+ +T + + E +E +EL+KI + + C +L ++ + E +G+ +V IG+ ++
Sbjct: 27 LGKNSITPEFIEAVREYMEKHELMKIHVLKNCIDDLRELGNTIAERSGTELVQIIGRMIV 86
Query: 113 IYRPS 117
+Y+P+
Sbjct: 87 LYKPA 91
>gi|210612752|ref|ZP_03289467.1| hypothetical protein CLONEX_01669 [Clostridium nexile DSM 1787]
gi|210151445|gb|EEA82453.1| hypothetical protein CLONEX_01669 [Clostridium nexile DSM 1787]
Length = 96
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A + + VGKS +T + + E L A EL+KI + + C +
Sbjct: 1 MTSKQRAYLKSLAMVMDPIFQ---VGKSSMTPELTNAIAEALTARELIKINVLQNCADDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++ + L E T S VV IG+ +++Y+
Sbjct: 58 KEIAQILAERTRSQVVQVIGKKIVLYK 84
>gi|169335441|ref|ZP_02862634.1| hypothetical protein ANASTE_01855 [Anaerofustis stercorihominis DSM
17244]
gi|169258179|gb|EDS72145.1| putative RNA-binding protein, YhbY family [Anaerofustis
stercorihominis DSM 17244]
Length = 94
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK G++D +VT + L+ EL+K KI + ++ + + L E T S VV IG T +
Sbjct: 22 IGKDGMSDNIVTQADDALKVRELVKGKIQQNSLEDVRESAEYLAEKTNSEVVITIGSTFV 81
Query: 113 IYR 115
+YR
Sbjct: 82 LYR 84
>gi|380510812|ref|ZP_09854219.1| hypothetical protein XsacN4_06343 [Xanthomonas sacchari NCPPB 4393]
Length = 101
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ +G GVT + E LE +EL+K+K+
Sbjct: 5 LTSAQNRFLRGLAHDLKPLLQ---IGSKGVTPAFLAELDEVLERHELVKVKVGGDDREAR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + L E + S +V +IG T I+YRP+
Sbjct: 62 DAAIGSLVEQSHSVLVQRIGHTAILYRPA 90
>gi|226951535|ref|ZP_03821999.1| RNA-binding protein [Acinetobacter sp. ATCC 27244]
gi|294651177|ref|ZP_06728509.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|226837727|gb|EEH70110.1| RNA-binding protein [Acinetobacter sp. ATCC 27244]
gi|292822930|gb|EFF81801.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 108
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L++ E+K L H+L + ++G G+T+ V+ L +EL+K+KI
Sbjct: 1 MAALSIHERKRLRQIGHALNPVV---MIGGQGLTESVIEEAQRALNDHELIKVKI----A 53
Query: 86 GELED----VVKQLEEATGSAVVSQIGQTVIIYRPS 117
GE D V+ + EATG+ V +IG+ V++Y+ +
Sbjct: 54 GEDRDARAAVIDAIVEATGAEAVQKIGKIVLLYKKA 89
>gi|312793302|ref|YP_004026225.1| hypothetical protein Calkr_1104 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180442|gb|ADQ40612.1| protein of unknown function UPF0044 [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 95
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ +L A+++ ++ +GK G+T+ V+ E L A EL+KI + + C
Sbjct: 2 LTSKQRAKLRGMANTMDAIIR---IGKEGITERVLRQIDEALTARELIKITLEKNCDKNP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + + E + V IG+ ++IYR S
Sbjct: 59 KEAIAYICEKLNAEPVQVIGRKIVIYRMS 87
>gi|301300325|ref|ZP_07206530.1| RNA-binding protein, YhbY family [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852061|gb|EFK79740.1| RNA-binding protein, YhbY family [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 101
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL K+K+ L S AH L + +GK G+++ + ++ L+ ELLK+ I + E
Sbjct: 2 KLRGKQKRYLRSEAHHLKPIFQ---IGKDGLSEVWLDEVLKALDKRELLKVNILQNSLVE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+EDV + +E + + V+ IG +++++ S
Sbjct: 59 VEDVKEFIENNSDAQVIQTIGNVLVLFKKS 88
>gi|269468908|gb|EEZ80495.1| RNA-binding protein [uncultured SUP05 cluster bacterium]
Length = 100
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ KLT +KK L S H+L +VG+ G+++ V+ ++ +ELLKIKI
Sbjct: 1 MIKLTNNQKKFLRSKGHALKP---VVMVGQHGLSESVLAELESSMNKHELLKIKIRTEDK 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
E + ++ ++ E + S +V IG ++IYR
Sbjct: 58 DEKQKMIDKIIEFSQSHLVQVIGNVMVIYR 87
>gi|169838023|ref|ZP_02871211.1| hypothetical protein cdivTM_13159 [candidate division TM7
single-cell isolate TM7a]
Length = 120
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ +L+ KE+ L AH+L ++ +GK G+ + V+ S E ++ EL+K+KI +
Sbjct: 1 MIQLSSKERAFLRKLAHNLDPIVR---IGKDGIDENVLNSIAEVVKKRELIKVKILQNSS 57
Query: 86 GELE-DVVKQLEEATGSAVVSQIGQTVIIYRP 116
E ++ ++ +T S V +IG +I ++P
Sbjct: 58 VEFNREMGDEIANSTKSIFVDKIGNILIFFKP 89
>gi|442318161|ref|YP_007358182.1| hypothetical protein MYSTI_01149 [Myxococcus stipitatus DSM 14675]
gi|441485803|gb|AGC42498.1| hypothetical protein MYSTI_01149 [Myxococcus stipitatus DSM 14675]
Length = 96
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+++ L + H L + +VG+SGVT+GV+ + + L+ +EL+K+KI+ P
Sbjct: 3 LTGKQRRHLRALGHHLEPVV---IVGQSGVTEGVIAAVEQALQDHELIKVKINE-GPETR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++ ++ E TG+ +G+T + ++ + K E
Sbjct: 59 QEASARIAEGTGAEQAQLLGRTALYFKKRKEKSKFE 94
>gi|307730493|ref|YP_003907717.1| hypothetical protein [Burkholderia sp. CCGE1003]
gi|307585028|gb|ADN58426.1| protein of unknown function UPF0044 [Burkholderia sp. CCGE1003]
Length = 183
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P K++ ++ EL S AH+L + LVG G+TD V+ L A++L+KI++
Sbjct: 1 MPALKVSSDQRAELRSQAHALKPVV---LVGAEGLTDAVLAEIKVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + +Q+ + +A + IG+ ++I++P
Sbjct: 58 EREERIAIYEQICDKLNAAPIQHIGKLLVIWKP 90
>gi|302875576|ref|YP_003844209.1| hypothetical protein Clocel_2748 [Clostridium cellulovorans 743B]
gi|307690105|ref|ZP_07632551.1| putative RNA-binding protein [Clostridium cellulovorans 743B]
gi|302578433|gb|ADL52445.1| protein of unknown function UPF0044 [Clostridium cellulovorans
743B]
Length = 97
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L + +GK+G+ + + E LEA EL+KIKI E
Sbjct: 2 LTGKQRSYLRSLAHNLEPIFQ---IGKNGIEENFLIQVDEALEARELIKIKILNNSDFEA 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
+ + E + IG+ ++YR S+ + K+E
Sbjct: 59 REASDLICEKLKCEGIQAIGKKFVLYRKSIKKPKIE 94
>gi|333893353|ref|YP_004467228.1| RNA binding protein [Alteromonas sp. SN2]
gi|332993371|gb|AEF03426.1| RNA binding protein [Alteromonas sp. SN2]
Length = 97
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ K+K+ L AH L K QL G +G+T+GVV L +EL+K+K+ E
Sbjct: 2 KLSNKQKQFLKGLAHPL--KPIVQL-GSNGLTEGVVAEIDNALNFHELIKVKVPTDDREE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + T S + IG T+I+YRPS
Sbjct: 59 KSLIMDAIVRETKSEKLQVIGHTLILYRPS 88
>gi|291616002|ref|YP_003518744.1| hypothetical protein PANA_0449 [Pantoea ananatis LMG 20103]
gi|378768807|ref|YP_005197281.1| RNA-binding protein YhbY [Pantoea ananatis LMG 5342]
gi|386018169|ref|YP_005936471.1| hypothetical protein PAJ_3596 [Pantoea ananatis AJ13355]
gi|386080913|ref|YP_005994438.1| RNA-binding protein YhbY [Pantoea ananatis PA13]
gi|291151032|gb|ADD75616.1| YhbY [Pantoea ananatis LMG 20103]
gi|327396253|dbj|BAK13675.1| UPF0044 protein YhbY [Pantoea ananatis AJ13355]
gi|354990094|gb|AER34218.1| RNA-binding protein YhbY [Pantoea ananatis PA13]
gi|365188294|emb|CCF11244.1| RNA-binding protein YhbY [Pantoea ananatis LMG 5342]
Length = 97
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L ++G +G+T+GV+ LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKP---VVMLGGNGLTEGVLAEIEHALEHHELIKVKIASEERET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ +V+ + T ++ V IG+T+++YRP+
Sbjct: 59 RQLIVEAIVRETRASNVQVIGKTLVLYRPA 88
>gi|259907034|ref|YP_002647390.1| hypothetical protein EpC_03530 [Erwinia pyrifoliae Ep1/96]
gi|385786974|ref|YP_005818083.1| hypothetical protein EJP617_15150 [Erwinia sp. Ejp617]
gi|387869747|ref|YP_005801117.1| CRS2-associated factor 1 [Erwinia pyrifoliae DSM 12163]
gi|224962656|emb|CAX54111.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
gi|283476830|emb|CAY72668.1| CRS2-associated factor 1, mitochondrial precursor [Erwinia
pyrifoliae DSM 12163]
gi|310766246|gb|ADP11196.1| conserved uncharacterized protein [Erwinia sp. Ejp617]
Length = 97
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKP---VVMLGNNGLTEGVLAEIEQALEHHELIKVKIATEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + T + V IG+T+++YRP+
Sbjct: 59 KALIVEAIVRETRAVNVQVIGKTLVLYRPT 88
>gi|335042623|ref|ZP_08535650.1| RNA binding protein [Methylophaga aminisulfidivorans MP]
gi|333789237|gb|EGL55119.1| RNA binding protein [Methylophaga aminisulfidivorans MP]
Length = 97
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K+++ L AH+L + ++G SG+TD V+ LE +EL+K+++ +
Sbjct: 3 VTDKQRRYLKGLAHTLKPVV---MIGNSGLTDSVLAEIDNALEHHELIKVRVSGQERADR 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ ++ E +G+ +V IG YRPS
Sbjct: 60 KAMLDKIAEESGADLVQVIGHIGGFYRPS 88
>gi|296313877|ref|ZP_06863818.1| CRS1 / YhbY domain protein [Neisseria polysaccharea ATCC 43768]
gi|296839606|gb|EFH23544.1| CRS1 / YhbY domain protein [Neisseria polysaccharea ATCC 43768]
Length = 94
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLNTKEILELKARAHHLNPVV---MVGQQGLTDSVIRETDVALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + ++ IG+ ++++R ++
Sbjct: 62 RVEICNALCEAVDAQLIQHIGKLLVLWRKNI 92
>gi|15602578|ref|NP_245650.1| hypothetical protein PM0713 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|378774415|ref|YP_005176658.1| RNA-binding, CRM domain-containing protein [Pasteurella multocida
36950]
gi|383310382|ref|YP_005363192.1| RNA-binding protein YhbY [Pasteurella multocida subsp. multocida
str. HN06]
gi|386834144|ref|YP_006239459.1| hypothetical protein [Pasteurella multocida subsp. multocida str.
3480]
gi|417850604|ref|ZP_12496480.1| hypothetical protein GEW_04447 [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|417855799|ref|ZP_12500870.1| hypothetical protein AAUPMG_04302 [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|421263448|ref|ZP_15714495.1| hypothetical protein KCU_03784 [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|425063397|ref|ZP_18466522.1| RNA binding protein [Pasteurella multocida subsp. gallicida X73]
gi|425065574|ref|ZP_18468694.1| RNA binding protein [Pasteurella multocida subsp. gallicida P1059]
gi|12721004|gb|AAK02797.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
gi|338215409|gb|EGP01688.1| hypothetical protein AAUPMG_04302 [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338220551|gb|EGP06036.1| hypothetical protein GEW_04447 [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|356596963|gb|AET15689.1| RNA-binding, CRM domain protein [Pasteurella multocida 36950]
gi|380871654|gb|AFF24021.1| RNA-binding protein YhbY [Pasteurella multocida subsp. multocida
str. HN06]
gi|385200845|gb|AFI45700.1| hypothetical protein NT08PM_0559 [Pasteurella multocida subsp.
multocida str. 3480]
gi|401689574|gb|EJS84986.1| hypothetical protein KCU_03784 [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|404382960|gb|EJZ79417.1| RNA binding protein [Pasteurella multocida subsp. gallicida X73]
gi|404383950|gb|EJZ80395.1| RNA binding protein [Pasteurella multocida subsp. gallicida P1059]
Length = 100
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L + ++G +G+T+GV+ L +EL+K+KI
Sbjct: 5 LSTKQKQFLKGLAHHLNPVV---MIGNNGLTEGVLAEIDNALAHHELIKVKIAGADREVK 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T ++ V IG +++YRPS
Sbjct: 62 QLIIDAIVRETNASAVQTIGHILVLYRPS 90
>gi|389575763|ref|ZP_10165791.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Eubacterium cellulosolvens 6]
gi|389311248|gb|EIM56181.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Eubacterium cellulosolvens 6]
Length = 97
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
+Y SL K L +GKSGVT + + E L A EL+KI I + C + +++ + L E
Sbjct: 7 AYLKSLAMKENAILHIGKSGVTPELTENVREALIARELIKIGILQNCMDDPKEMAQTLAE 66
Query: 98 ATGSAVVSQIGQTVIIYR 115
T S VV IG+ +++Y+
Sbjct: 67 RTKSQVVQIIGKKIVLYK 84
>gi|90961477|ref|YP_535393.1| hypothetical protein LSL_0501 [Lactobacillus salivarius UCC118]
gi|90820671|gb|ABD99310.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118]
Length = 106
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL K+K+ L S AH L + +GK G+++ + ++ L+ ELLK+ I + E
Sbjct: 5 KLRGKQKRYLRSEAHHLKPIFQ---IGKDGLSEVWLDEVLKALDKRELLKVNILQNSLVE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+EDV + +E + + V+ IG +++++ S
Sbjct: 62 IEDVKEFIENNSDAQVIQTIGNVLVLFKKS 91
>gi|292486827|ref|YP_003529697.1| CRS2-associated factor 1 [Erwinia amylovora CFBP1430]
gi|292900774|ref|YP_003540143.1| hypothetical protein EAM_3080 [Erwinia amylovora ATCC 49946]
gi|428783756|ref|ZP_19001249.1| CRS2-associated factor 1 [Erwinia amylovora ACW56400]
gi|291200622|emb|CBJ47754.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
gi|291552244|emb|CBA19281.1| CRS2-associated factor 1, mitochondrial precursor [Erwinia
amylovora CFBP1430]
gi|312170895|emb|CBX79154.1| CRS2-associated factor 1, mitochondrial precursor [Erwinia
amylovora ATCC BAA-2158]
gi|426277471|gb|EKV55196.1| CRS2-associated factor 1 [Erwinia amylovora ACW56400]
Length = 97
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKP---VVMLGNNGLTEGVLAEIEQALEHHELIKVKIATEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + T + V IG+T+++YRP+
Sbjct: 59 KALIVEAIVRETRAVNVQVIGKTLVLYRPT 88
>gi|15676698|ref|NP_273842.1| hypothetical protein NMB0800 [Neisseria meningitidis MC58]
gi|433464783|ref|ZP_20422268.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM422]
gi|433488034|ref|ZP_20445202.1| CRS1 / YhbY domain protein [Neisseria meningitidis M13255]
gi|433490152|ref|ZP_20447281.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM418]
gi|433504718|ref|ZP_20461658.1| CRS1 / YhbY domain protein [Neisseria meningitidis 9506]
gi|433506822|ref|ZP_20463734.1| CRS1 / YhbY domain protein [Neisseria meningitidis 9757]
gi|433508913|ref|ZP_20465786.1| CRS1 / YhbY domain protein [Neisseria meningitidis 12888]
gi|433511067|ref|ZP_20467899.1| CRS1 / YhbY domain protein [Neisseria meningitidis 4119]
gi|7226033|gb|AAF41213.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|432204270|gb|ELK60315.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM422]
gi|432224500|gb|ELK80265.1| CRS1 / YhbY domain protein [Neisseria meningitidis M13255]
gi|432228060|gb|ELK83761.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM418]
gi|432242233|gb|ELK97757.1| CRS1 / YhbY domain protein [Neisseria meningitidis 9506]
gi|432242611|gb|ELK98129.1| CRS1 / YhbY domain protein [Neisseria meningitidis 9757]
gi|432247727|gb|ELL03162.1| CRS1 / YhbY domain protein [Neisseria meningitidis 12888]
gi|432248558|gb|ELL03983.1| CRS1 / YhbY domain protein [Neisseria meningitidis 4119]
Length = 94
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLNTKEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + +V IG+ ++++R ++
Sbjct: 62 RIEICTALCEAVDAQLVQHIGKLLVLWRKNI 92
>gi|337279399|ref|YP_004618871.1| hypothetical protein Rta_17620 [Ramlibacter tataouinensis TTB310]
gi|334730476|gb|AEG92852.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length = 157
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT+ E+K + AH L + ++G G+T V L A+ L+KI++
Sbjct: 1 MPALQLTIAERKAHRADAHHLDPVV---MIGNDGLTPAVKKETDAALNAHGLIKIRVLGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEE 125
+ E + +QL + +A + IG+ ++++RP + + E+
Sbjct: 58 DRAQREAIYQQLADELSAAPIQHIGKLLVLWRPQPKKERAED 99
>gi|402835293|ref|ZP_10883864.1| RNA-binding protein, YhbY family [Mogibacterium sp. CM50]
gi|402275255|gb|EJU24413.1| RNA-binding protein, YhbY family [Mogibacterium sp. CM50]
Length = 103
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
SY L +K++ + +GK+ +TD +V S E L ANEL+K ++ DV +L E
Sbjct: 8 SYLKGLAQKIEPTVYIGKADLTDNIVRSIDENLTANELVKGQLQEGSMLNPADVCSELAE 67
Query: 98 ATGSAVVSQIGQTVIIYR 115
+ V+ IG+ ++YR
Sbjct: 68 TLHAEFVAAIGRRFVLYR 85
>gi|170695457|ref|ZP_02886602.1| protein of unknown function UPF0044 [Burkholderia graminis C4D1M]
gi|170139648|gb|EDT07831.1| protein of unknown function UPF0044 [Burkholderia graminis C4D1M]
Length = 175
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P K++ ++ EL S AH+L + LVG G+TD V+ L A++L+KI++
Sbjct: 1 MPALKVSSDQRAELRSQAHALKPVV---LVGAEGLTDAVLAEIKVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + +Q+ + +A + IG+ ++I++P
Sbjct: 58 EREERIAIYEQICDKLNAAPIQHIGKLLVIWKP 90
>gi|320529183|ref|ZP_08030275.1| CRS1 / YhbY domain protein [Selenomonas artemidis F0399]
gi|320138813|gb|EFW30703.1| CRS1 / YhbY domain protein [Selenomonas artemidis F0399]
Length = 81
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
++GK GV+ VVTS E ++ EL+K+++ + P E D + L E + +V IG+
Sbjct: 8 MIGKEGVSPAVVTSAREAIKKRELIKVRVLQNAPDEPVDAITMLAERADANLVQVIGRNG 67
Query: 112 IIYRPSLTRMKLE 124
+++R + + ++E
Sbjct: 68 LLFRRNFDQPRIE 80
>gi|116310121|emb|CAH67138.1| OSIGBa0130P02.2 [Oryza sativa Indica Group]
Length = 1048
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 45 GKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAV 103
G +L+ +L VGK+GVT+G+V E EL+KI+ ++ + LE TG V
Sbjct: 153 GIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLV 212
Query: 104 VSQIGQTVIIYR 115
+ + G T+I+YR
Sbjct: 213 IWRSGSTIILYR 224
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE-LEDVVKQLEEATGSAVVSQIGQTV 111
VG++ V GV + + + L + I G ++ ++ +LEEATGS +VS+ V
Sbjct: 940 VGRNNVITGVAKAIKTHFKKHPLAIVNIKNRADGTPIQQLISELEEATGSVLVSREPNKV 999
Query: 112 IIYR 115
I+YR
Sbjct: 1000 ILYR 1003
>gi|345875871|ref|ZP_08827658.1| CRS1 / YhbY domain protein [Neisseria weaveri LMG 5135]
gi|343968168|gb|EGV36400.1| CRS1 / YhbY domain protein [Neisseria weaveri LMG 5135]
Length = 93
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 27 PKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPG 86
KL+ K+ EL + AH L + ++G+ G+TD V+ L A+EL+K+++
Sbjct: 3 DKLSTKQILELKAQAHHLNPVV---MIGQHGLTDSVIKETDSALTAHELIKVRVLGDDRE 59
Query: 87 ELEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
E ++ L EA + +V IG+ +++YR +L
Sbjct: 60 ERIEICNALCEAVDAQLVQHIGKLLVLYRKNL 91
>gi|359430260|ref|ZP_09221272.1| hypothetical protein ACT4_037_00140 [Acinetobacter sp. NBRC 100985]
gi|358234310|dbj|GAB02811.1| hypothetical protein ACT4_037_00140 [Acinetobacter sp. NBRC 100985]
Length = 108
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L++ E+K L H+L + ++G G+T+ V+ L +EL+K+KI
Sbjct: 1 MAALSIHERKRLRQIGHALNPVV---MIGSQGLTESVIEETNRALNDHELIKVKI----A 53
Query: 86 GELED----VVKQLEEATGSAVVSQIGQTVIIYRPS 117
GE D V+ + EATG+ V +IG+ V++Y+ +
Sbjct: 54 GEDRDARAAVIDAIVEATGAESVQKIGKIVLLYKKA 89
>gi|221134247|ref|ZP_03560552.1| RNA binding protein; ancient RNA-binding IF3-C fold [Glaciecola sp.
HTCC2999]
Length = 98
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ K+K+ L AH L K QL G +G T+GV+ L +EL+K+KI E
Sbjct: 2 KLSNKQKQYLKGLAHPL--KPVVQL-GGNGFTEGVLAEIESALAHHELIKVKIPSDDREE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQ 129
+ ++ + TG+ V IG ++I++PS EEKK Q
Sbjct: 59 KQLIMDAIVRETGAVKVQNIGHILVIFKPS------EEKKIQ 94
>gi|347522461|ref|YP_004780032.1| hypothetical protein LCGT_1855 [Lactococcus garvieae ATCC 49156]
gi|385833845|ref|YP_005871620.1| hypothetical protein [Lactococcus garvieae Lg2]
gi|343181029|dbj|BAK59368.1| conserved hypothetical protein [Lactococcus garvieae ATCC 49156]
gi|343182998|dbj|BAK61336.1| conserved hypothetical protein [Lactococcus garvieae Lg2]
Length = 102
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+LT K+K+ L S A ++ ++ +GKSGV++ ++TS +A EL+K+ I +
Sbjct: 2 ELTGKQKRYLRSLAVNIRPIVQ---IGKSGVSNEILTSIRHAADARELIKVNILQNSDET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
EDV ++E G VV IG+ V++++ S
Sbjct: 59 AEDVAAMIDE-MGLNVVQIIGRNVVVFKVS 87
>gi|148244273|ref|YP_001218967.1| hypothetical protein COSY_0107 [Candidatus Vesicomyosocius okutanii
HA]
gi|146326100|dbj|BAF61243.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
HA]
Length = 100
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ KLT +KK L S +HSL + G+ G+ + V+ T++ +ELLKIKI
Sbjct: 1 MTKLTNNQKKFLRSKSHSLKP---IVMAGQHGLNESVLAELEITMDKHELLKIKIRMDKR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
E + ++ ++ + +V IG V+IYR
Sbjct: 58 AEKQKIIDKIINTYHAHLVQIIGNIVVIYR 87
>gi|375135742|ref|YP_004996392.1| hypothetical protein BDGL_002124 [Acinetobacter calcoaceticus
PHEA-2]
gi|325123187|gb|ADY82710.1| hypothetical protein BDGL_002124 [Acinetobacter calcoaceticus
PHEA-2]
Length = 107
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L++ E+K L H L + ++G G+TD V+ + L +EL+K+K+
Sbjct: 1 MAALSIHERKRLRQIGHVLNPVV---MIGGQGLTDAVIEETLRALNDHELIKVKV----A 53
Query: 86 GELED----VVKQLEEATGSAVVSQIGQTVIIYRPS 117
GE + V+ + EATG+ V +IG+ +++Y+ +
Sbjct: 54 GEDREARTAVIDAIVEATGAEAVQKIGKIILLYKKA 89
>gi|291530285|emb|CBK95870.1| conserved hypothetical protein TIGR00253 [Eubacterium siraeum 70/3]
gi|291557100|emb|CBL34217.1| conserved hypothetical protein TIGR00253 [Eubacterium siraeum
V10Sc8a]
Length = 100
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+ ++D ++ + LEA EL+KI++ C +++ ++ E T S VV IG ++
Sbjct: 24 IGKNAISDELIKQLSDALEARELIKIRVLENCGYSAKELAGEIGERTDSIVVQVIGTKIV 83
Query: 113 IYRPS 117
+YR +
Sbjct: 84 LYRQN 88
>gi|188532496|ref|YP_001906293.1| RNA-binding protein containing KH domain, possibly ribosomal
protein [Erwinia tasmaniensis Et1/99]
gi|188027538|emb|CAO95385.1| Predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Erwinia tasmaniensis Et1/99]
Length = 97
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKP---VVMLGNNGLTEGVLAEIEQALEHHELIKVKIATEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V+ + T + V IG+T+++YRP+
Sbjct: 59 KTLIVEAIVRETRAVNVQVIGKTLVLYRPT 88
>gi|56478165|ref|YP_159754.1| RNA-binding protein [Aromatoleum aromaticum EbN1]
gi|56314208|emb|CAI08853.1| predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Aromatoleum aromaticum EbN1]
Length = 156
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ +LT ++EL + AH L + + +G+T V+ +L+A+EL+KIK+H
Sbjct: 1 MSELTPARRRELRAGAHHLNPVVS---IAGNGLTPAVLGEIDRSLQAHELIKIKVHGAER 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ ++K + +A G++ + IG ++I+R
Sbjct: 58 AARDALMKAVCDALGASPIQHIGTILVIWR 87
>gi|407796157|ref|ZP_11143113.1| RNA-binding protein YqeI [Salimicrobium sp. MJ3]
gi|407019511|gb|EKE32227.1| RNA-binding protein YqeI [Salimicrobium sp. MJ3]
Length = 96
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+KK L +H++ + +GK G+ +V E LE EL+K+ I + E
Sbjct: 2 LTSKQKKHLRKLSHNIQPIFQ---IGKGGLNSNLVVQIDEALEKRELIKVSILQNSMEEP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ + T + +V IG T+I+YR S
Sbjct: 59 SVAAEEIAQDTDAEIVQVIGGTIILYRES 87
>gi|154504424|ref|ZP_02041162.1| hypothetical protein RUMGNA_01928 [Ruminococcus gnavus ATCC 29149]
gi|336432373|ref|ZP_08612208.1| hypothetical protein HMPREF0991_01327 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153795353|gb|EDN77773.1| RNA-binding protein, YhbY family [Ruminococcus gnavus ATCC 29149]
gi|336018710|gb|EGN48447.1| hypothetical protein HMPREF0991_01327 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 96
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A ++ + +GKS +T + + E L+A EL+KI + + C +
Sbjct: 1 MTTKQRAYLKSLAMTMDPIFQ---IGKSSMTPSLTQAISEALDARELIKISVLQNCADDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + + E T S VV IG+ +++Y+
Sbjct: 58 RALAEMVAERTRSQVVQVIGKKIVLYK 84
>gi|406039652|ref|ZP_11047007.1| hypothetical protein AursD1_07507 [Acinetobacter ursingii DSM 16037
= CIP 107286]
Length = 107
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+++E+K L H+L + ++G G+T+ V+ L +EL+K+K+
Sbjct: 1 MAALSIQERKRLRQIGHALNPVV---MIGGQGLTENVIEETNRALNDHELIKVKV----A 53
Query: 86 GELEDV----VKQLEEATGSAVVSQIGQTVIIYR------PSLTRM 121
GE +V + +L +ATG+ V +IG+ V++Y+ P+L+ +
Sbjct: 54 GEDREVRAQVIDELAQATGAEAVQKIGKIVLLYKKAPKQNPNLSNL 99
>gi|381400482|ref|ZP_09925447.1| putative RNA-binding protein [Kingella kingae PYKK081]
gi|380834527|gb|EIC14367.1| putative RNA-binding protein [Kingella kingae PYKK081]
Length = 111
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT ++ EL + AH L + +VG+ G+T+ VV I L+A+EL+K+++ E
Sbjct: 19 LTKQQIVELKARAHHLNPVV---MVGQKGLTEAVVAETITALQAHELIKVRVLGDDREER 75
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + L EAT + +V IG+ +++YR
Sbjct: 76 IAICQALCEATEAQLVQHIGKLLVLYR 102
>gi|262376627|ref|ZP_06069855.1| RNA-binding protein [Acinetobacter lwoffii SH145]
gi|262308337|gb|EEY89472.1| RNA-binding protein [Acinetobacter lwoffii SH145]
gi|407008484|gb|EKE23847.1| RNA-binding protein [uncultured bacterium]
Length = 107
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+++E+K L H+L ++G G+T+ V+ L +EL+K+KI
Sbjct: 1 MASLSIQERKRLRQIGHALNP---VVMLGDKGLTENVIEELARALNDHELIKVKIVAEDR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ ++ EATG+ VV IG+ ++Y+ +
Sbjct: 58 EARAALIAEISEATGAEVVQTIGKIALLYKKA 89
>gi|34763179|ref|ZP_00144145.1| Hypothetical RNA binding protein [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|294785215|ref|ZP_06750503.1| RNA-binding protein YqeI [Fusobacterium sp. 3_1_27]
gi|421145278|ref|ZP_15605163.1| RNA binding protein [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
gi|422338240|ref|ZP_16419200.1| putative RNA-binding protein YqeI [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|27887148|gb|EAA24253.1| Hypothetical RNA binding protein [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|294486929|gb|EFG34291.1| RNA-binding protein YqeI [Fusobacterium sp. 3_1_27]
gi|355372878|gb|EHG20217.1| putative RNA-binding protein YqeI [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|395488315|gb|EJG09185.1| RNA binding protein [Fusobacterium nucleatum subsp. fusiforme ATCC
51190]
Length = 99
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK G+ +V S ++ + + EL+K+KI + C E + +L + VV IG+T+I
Sbjct: 22 IGKDGLNQNIVQSILDAIASRELIKVKILQNCEEEKTIIYSKLMDIKDFEVVGMIGRTII 81
Query: 113 IYRPS 117
I++ +
Sbjct: 82 IFKEN 86
>gi|225025980|ref|ZP_03715172.1| hypothetical protein EUBHAL_00217 [Eubacterium hallii DSM 3353]
gi|224956766|gb|EEG37975.1| RNA-binding protein, YhbY family [Eubacterium hallii DSM 3353]
Length = 95
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A ++ + +GK+ +T V+ E ++ EL+K+ + + C +
Sbjct: 1 MTSKQRAYLKSLAMTMDPIFQ---IGKASLTPEVIEGIREAIDKRELIKVSVLKNCFDDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + L E T S VV IG+ +++Y+P+
Sbjct: 58 REIAEVLAERTRSQVVQVIGKKIVLYKPA 86
>gi|21741981|emb|CAD41031.1| OSJNBa0060P14.12 [Oryza sativa Japonica Group]
gi|32492164|emb|CAE04823.1| OSJNBb0048E02.3 [Oryza sativa Japonica Group]
Length = 1012
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 45 GKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAV 103
G +L+ +L VGK+GVT+G+V E EL+KI+ ++ + LE TG V
Sbjct: 153 GIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLV 212
Query: 104 VSQIGQTVIIYR 115
+ + G T+I+YR
Sbjct: 213 IWRSGSTIILYR 224
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE-LEDVVKQLEEATGSAVVSQIGQTV 111
VG++ V GV + + + L + I G ++ ++ +LEEATGS +VS+ V
Sbjct: 904 VGRNNVITGVAKAIKTHFKKHPLAIVNIKNRADGTPIQQLISELEEATGSVLVSREPNKV 963
Query: 112 IIYR 115
I+YR
Sbjct: 964 ILYR 967
>gi|377821307|ref|YP_004977678.1| hypothetical protein BYI23_A018630 [Burkholderia sp. YI23]
gi|357936142|gb|AET89701.1| hypothetical protein BYI23_A018630 [Burkholderia sp. YI23]
Length = 179
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P KL+ E+ +L S AH+L + LVG G+TD V LEA++L+K+++
Sbjct: 1 MPALKLSPAERADLRSQAHALKPVV---LVGAEGLTDAVFKEINVHLEAHQLIKVRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+ ++ + +A + IG+ ++I+RP
Sbjct: 58 EREARVAIYDEICDRLNAAPIQHIGKLLVIWRP 90
>gi|297569186|ref|YP_003690530.1| protein of unknown function UPF0044 [Desulfurivibrio alkaliphilus
AHT2]
gi|296925101|gb|ADH85911.1| protein of unknown function UPF0044 [Desulfurivibrio alkaliphilus
AHT2]
Length = 157
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 35 KELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQ 94
+EL + H L + +VG+ G+T V+ + L A+EL+KIKI CP + V +Q
Sbjct: 15 RELRAQGHHLNPTV---MVGREGLTAAVLAALEAVLTAHELVKIKIQEGCPEDKTTVAQQ 71
Query: 95 LEEATGSAVVSQIGQTVIIYR 115
L + S +V IG T+++YR
Sbjct: 72 LAADSNSRIVQIIGGTILLYR 92
>gi|229815867|ref|ZP_04446191.1| hypothetical protein COLINT_02923 [Collinsella intestinalis DSM
13280]
gi|229808562|gb|EEP44340.1| hypothetical protein COLINT_02923 [Collinsella intestinalis DSM
13280]
Length = 99
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+ ++L + AH L + +GK+ VTD + E L+A+EL+K +
Sbjct: 3 LTGKQVRQLRALAHHLNPVVH---IGKADVTDAIAKQAEEALDAHELIKCSVQDGSLLSC 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKK 127
+ QL E G+ VV IG +YR S +R +E K
Sbjct: 60 REAADQLAELVGAEVVQVIGHRFSLYRAS-SRKDIEHIK 97
>gi|168024308|ref|XP_001764678.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683972|gb|EDQ70377.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 625
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 16 VKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANE 74
V+SPS + L +P +K + +LG +L+ +L +G+ GVT G+V + E E
Sbjct: 23 VRSPSMAELTIPDFELKRLR-------TLGLQLQGRLKIGRLGVTPGIVEAIHERWRTCE 75
Query: 75 LLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ K+K ++ + LE TG V+ + G ++YR
Sbjct: 76 IAKVKCDAPLSMNMKKAHEDLERLTGGLVIWRSGSAAVVYR 116
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 15 EVKSPSRSPLPL---PKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLE 71
E K P R LP PKL E EL A + + ++GK+ DGV + ++ E
Sbjct: 211 EFKRPFRL-LPYGVKPKLNNFELTELRHLARPIPPHI---VLGKNRGLDGVAAAIVKLWE 266
Query: 72 ANELLKIKIHRTCPG-ELEDVVKQLEEATGSAVVSQIGQTVIIYR-----PSLTRMKLEE 125
+E++KI + R E + ++L+ TG ++S+ + ++ +R P + LEE
Sbjct: 267 RSEIVKIGVKRGVQNTSNERMAEELKRLTGGTLLSRDKEFIVFHRGKDFLPPAVQAALEE 326
Query: 126 KKQQAR 131
+ Q A+
Sbjct: 327 RDQMAK 332
>gi|308050592|ref|YP_003914158.1| hypothetical protein Fbal_2882 [Ferrimonas balearica DSM 9799]
gi|307632782|gb|ADN77084.1| protein of unknown function UPF0044 [Ferrimonas balearica DSM 9799]
Length = 100
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 15/98 (15%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ +LT K+K+ L AHSL + L+G +G+T+GV+ + L+ +EL+K+K
Sbjct: 1 MTQLTNKQKQYLKGLAHSLRPVV---LLGANGLTEGVLAEIEQALDHHELIKVK------ 51
Query: 86 GELED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED ++ + TG+ V IG ++YRPS
Sbjct: 52 AATEDREMKRAIMDAIARETGATEVQVIGHIQVLYRPS 89
>gi|257885286|ref|ZP_05664939.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|293569276|ref|ZP_06680574.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|406579806|ref|ZP_11055033.1| RNA-binding protein YhbY [Enterococcus sp. GMD4E]
gi|406582232|ref|ZP_11057361.1| RNA-binding protein YhbY [Enterococcus sp. GMD3E]
gi|406584273|ref|ZP_11059307.1| RNA-binding protein YhbY [Enterococcus sp. GMD2E]
gi|406589174|ref|ZP_11063617.1| RNA-binding protein YhbY [Enterococcus sp. GMD1E]
gi|410936073|ref|ZP_11367944.1| RNA-binding protein [Enterococcus sp. GMD5E]
gi|427395310|ref|ZP_18888232.1| hypothetical protein HMPREF9307_00408 [Enterococcus durans
FB129-CNAB-4]
gi|430844677|ref|ZP_19462574.1| RNA-binding protein YhbY [Enterococcus faecium E1050]
gi|430853383|ref|ZP_19471111.1| RNA-binding protein YhbY [Enterococcus faecium E1258]
gi|430862528|ref|ZP_19479845.1| RNA-binding protein YhbY [Enterococcus faecium E1573]
gi|430963076|ref|ZP_19487368.1| RNA-binding protein YhbY [Enterococcus faecium E1576]
gi|431010993|ref|ZP_19489737.1| RNA-binding protein YhbY [Enterococcus faecium E1578]
gi|431235845|ref|ZP_19503128.1| RNA-binding protein YhbY [Enterococcus faecium E1622]
gi|431263922|ref|ZP_19505810.1| RNA-binding protein YhbY [Enterococcus faecium E1623]
gi|431382666|ref|ZP_19511259.1| RNA-binding protein YhbY [Enterococcus faecium E1627]
gi|431523906|ref|ZP_19516931.1| RNA-binding protein YhbY [Enterococcus faecium E1634]
gi|447912727|ref|YP_007394139.1| RNA binding protein [Enterococcus faecium NRRL B-2354]
gi|257821138|gb|EEV48272.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|291587982|gb|EFF19832.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|404455025|gb|EKA01897.1| RNA-binding protein YhbY [Enterococcus sp. GMD4E]
gi|404458384|gb|EKA04818.1| RNA-binding protein YhbY [Enterococcus sp. GMD3E]
gi|404464319|gb|EKA09867.1| RNA-binding protein YhbY [Enterococcus sp. GMD2E]
gi|404471252|gb|EKA15802.1| RNA-binding protein YhbY [Enterococcus sp. GMD1E]
gi|410735536|gb|EKQ77446.1| RNA-binding protein [Enterococcus sp. GMD5E]
gi|425723810|gb|EKU86696.1| hypothetical protein HMPREF9307_00408 [Enterococcus durans
FB129-CNAB-4]
gi|430496108|gb|ELA72213.1| RNA-binding protein YhbY [Enterococcus faecium E1050]
gi|430540464|gb|ELA80666.1| RNA-binding protein YhbY [Enterococcus faecium E1258]
gi|430549106|gb|ELA88953.1| RNA-binding protein YhbY [Enterococcus faecium E1573]
gi|430555501|gb|ELA95038.1| RNA-binding protein YhbY [Enterococcus faecium E1576]
gi|430560015|gb|ELA99321.1| RNA-binding protein YhbY [Enterococcus faecium E1578]
gi|430572782|gb|ELB11628.1| RNA-binding protein YhbY [Enterococcus faecium E1622]
gi|430576358|gb|ELB15009.1| RNA-binding protein YhbY [Enterococcus faecium E1623]
gi|430581037|gb|ELB19484.1| RNA-binding protein YhbY [Enterococcus faecium E1627]
gi|430584864|gb|ELB23178.1| RNA-binding protein YhbY [Enterococcus faecium E1634]
gi|445188436|gb|AGE30078.1| RNA binding protein [Enterococcus faecium NRRL B-2354]
Length = 103
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L S AH L + +GK G+ ++ E LE EL+K+ + + +E+
Sbjct: 6 KQKRFLRSKAHHLQPIFQ---IGKGGINSAMIVQIEEALEKRELIKVSLLQNTDEIVEEA 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ LE+ +V IG+ +++Y+PS
Sbjct: 63 AQVLEKEIDCEIVQIIGRVIVLYKPS 88
>gi|297602873|ref|NP_001053020.2| Os04g0464800 [Oryza sativa Japonica Group]
gi|255675534|dbj|BAF14934.2| Os04g0464800 [Oryza sativa Japonica Group]
Length = 1042
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 45 GKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAV 103
G +L+ +L VGK+GVT+G+V E EL+KI+ ++ + LE TG V
Sbjct: 153 GIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLV 212
Query: 104 VSQIGQTVIIYR 115
+ + G T+I+YR
Sbjct: 213 IWRSGSTIILYR 224
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE-LEDVVKQLEEATGSAVVSQIGQTV 111
VG++ V GV + + + L + I G ++ ++ +LEEATGS +VS+ V
Sbjct: 904 VGRNNVITGVAKAIKTHFKKHPLAIVNIKNRADGTPIQQLISELEEATGSVLVSREPNKV 963
Query: 112 IIYR 115
I+YR
Sbjct: 964 ILYR 967
>gi|408373090|ref|ZP_11170788.1| hypothetical protein A11A3_03384 [Alcanivorax hongdengensis A-11-3]
gi|407766928|gb|EKF75367.1| hypothetical protein A11A3_03384 [Alcanivorax hongdengensis A-11-3]
Length = 104
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 44 LGKKLKCQLV-GKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSA 102
+G LK L+ G G+TD V LE +EL+K+K++ + D+V L + +G+
Sbjct: 14 IGHHLKAILIFGDKGLTDNFVEELNLRLEDHELIKVKVNAETRDDRADIVTALCQKSGAE 73
Query: 103 VVSQIGQTVIIYRPS 117
++ +IG ++YR +
Sbjct: 74 LIQRIGNIALLYRAA 88
>gi|365925268|ref|ZP_09448031.1| YhbY domain RNA binding protein [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 104
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+KK L + AH++ + VGK GV+D V L+ EL+KI + + E
Sbjct: 4 LSGKQKKFLKAKAHNMRPIFQ---VGKEGVSDKWVEQIKNALDKRELIKINVLQGSDFEA 60
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V L E T VV IG +++YR S
Sbjct: 61 SEVSDYLTENTDIIVVQVIGHVLVLYRQS 89
>gi|315127242|ref|YP_004069245.1| RNA binding protein [Pseudoalteromonas sp. SM9913]
gi|359438108|ref|ZP_09228150.1| RNA-binding protein [Pseudoalteromonas sp. BSi20311]
gi|392554109|ref|ZP_10301246.1| RNA binding protein [Pseudoalteromonas undina NCIMB 2128]
gi|315015756|gb|ADT69094.1| RNA binding protein [Pseudoalteromonas sp. SM9913]
gi|358027208|dbj|GAA64399.1| RNA-binding protein [Pseudoalteromonas sp. BSi20311]
Length = 98
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 11/93 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AHSL + L+G +G+T+GVV LE +EL+K+K+ P +
Sbjct: 3 LSNKQKQFLKGQAHSLKPVV---LLGSNGLTEGVVVEIQSALEIHELIKVKV----PTDD 55
Query: 89 EDVVKQLEEA----TGSAVVSQIGQTVIIYRPS 117
+ K + +A TG+ + IG T+++YR S
Sbjct: 56 RETKKLIFDAIVRETGATKLQTIGHTIVLYRQS 88
>gi|381159846|ref|ZP_09869078.1| putative RNA-binding protein, YhbY family [Thiorhodovibrio sp. 970]
gi|380877910|gb|EIC20002.1| putative RNA-binding protein, YhbY family [Thiorhodovibrio sp. 970]
Length = 101
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+P +T K++ L AH L + ++G+ G+T+ V+ L+ +EL+K+KI
Sbjct: 1 MPSITPKQRHWLKQQAHHLKPVV---MLGQHGLTEAVLREIRIALDHHELIKVKISAGDR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
E + ++ + E TG+ +V ++G +YR
Sbjct: 58 AERDQLITAITEETGAELVQRVGNAASLYR 87
>gi|332686085|ref|YP_004455859.1| RNA binding protein [Melissococcus plutonius ATCC 35311]
gi|379727857|ref|YP_005320042.1| RNA binding protein [Melissococcus plutonius DAT561]
gi|332370094|dbj|BAK21050.1| RNA binding protein [Melissococcus plutonius ATCC 35311]
gi|376318760|dbj|BAL62547.1| RNA binding protein [Melissococcus plutonius DAT561]
Length = 103
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L S A+ L + +GK G+ ++ E LE EL+KI + + EDV
Sbjct: 6 KQKRFLRSNANHLQPIFQ---IGKGGLNKEMINQMNEALEKKELIKISLLQNTNEITEDV 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ LE + VV IG+ +++++PS
Sbjct: 63 AQTLEASINCNVVQIIGRVLVLFKPS 88
>gi|331091106|ref|ZP_08339948.1| hypothetical protein HMPREF9477_00591 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405328|gb|EGG84864.1| hypothetical protein HMPREF9477_00591 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 97
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A ++ + +GKS +T + + E L A EL+KI + + C +
Sbjct: 1 MTTKQRAYLKSLAMTMDPIFQ---IGKSSMTPALTEAIGEALTARELIKISVLKNCADDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++ + E T S VV IG+ +++Y+
Sbjct: 58 KELAAMIAERTHSQVVQVIGKKIVLYK 84
>gi|404378492|ref|ZP_10983583.1| YhbY family putative RNA-binding protein [Simonsiella muelleri ATCC
29453]
gi|294483619|gb|EFG31303.1| YhbY family putative RNA-binding protein [Simonsiella muelleri ATCC
29453]
Length = 97
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ +++ L S AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 6 LSKEQRLALKSQAHHLHPVV---MVGQKGLTDAVIQETNTALNAHELIKVRVFGDDRAER 62
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ +L ATG+ +V IG+ +++YR
Sbjct: 63 VAICDELCAATGAQLVQHIGKLLVLYR 89
>gi|237744252|ref|ZP_04574733.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|260494163|ref|ZP_05814294.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|289765865|ref|ZP_06525243.1| conserved hypothetical protein [Fusobacterium sp. D11]
gi|336401182|ref|ZP_08581954.1| hypothetical protein HMPREF0404_01245 [Fusobacterium sp. 21_1A]
gi|336418584|ref|ZP_08598858.1| putative RNA-binding protein YqeI [Fusobacterium sp. 11_3_2]
gi|423136948|ref|ZP_17124591.1| YhbY family putative RNA-binding protein [Fusobacterium nucleatum
subsp. animalis F0419]
gi|229431481|gb|EEO41693.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|260198309|gb|EEW95825.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|289717420|gb|EFD81432.1| conserved hypothetical protein [Fusobacterium sp. D11]
gi|336161539|gb|EGN64540.1| hypothetical protein HMPREF0404_01245 [Fusobacterium sp. 21_1A]
gi|336164521|gb|EGN67426.1| putative RNA-binding protein YqeI [Fusobacterium sp. 11_3_2]
gi|371961015|gb|EHO78658.1| YhbY family putative RNA-binding protein [Fusobacterium nucleatum
subsp. animalis F0419]
Length = 99
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK G+ +V S ++ + + EL+K+KI + C E + +L + VV IG+T+I
Sbjct: 22 IGKDGLNQNIVQSILDAIASRELIKVKILQNCEEEKTIIYSKLMDIKDFEVVGMIGRTII 81
Query: 113 IYRPS 117
I++ +
Sbjct: 82 IFKEN 86
>gi|229817987|ref|ZP_04448269.1| hypothetical protein BIFANG_03274 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229784591|gb|EEP20705.1| hypothetical protein BIFANG_03274 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 101
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+ K+L + A+SL VGK+ +T+ + ET+E +EL+K +
Sbjct: 3 LTKKQTKQLRALANSLKPLF---YVGKNDLTEAAIKQADETIEKHELIKCAVQDGSELTA 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ +QL E G+ VV IG +IYR S
Sbjct: 60 KEAAEQLAERLGADVVQTIGNRFVIYRRS 88
>gi|167746509|ref|ZP_02418636.1| hypothetical protein ANACAC_01219 [Anaerostipes caccae DSM 14662]
gi|317471323|ref|ZP_07930681.1| CRS1/YhbY domain-containing protein [Anaerostipes sp. 3_2_56FAA]
gi|167653469|gb|EDR97598.1| RNA-binding protein, YhbY family [Anaerostipes caccae DSM 14662]
gi|316901201|gb|EFV23157.1| CRS1/YhbY domain-containing protein [Anaerostipes sp. 3_2_56FAA]
Length = 96
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
+Y SL K+ VGK ++ ++ E ++A EL+KI + + C + ++V + L E
Sbjct: 7 AYLKSLAMKIDPVFRVGKDSISPELIEGVREAIDARELIKIAVLQNCMDDPKEVAQTLAE 66
Query: 98 ATGSAVVSQIGQTVIIYRPSLTRMKLE 124
T S VV IG+ +++Y+ S K++
Sbjct: 67 RTRSEVVQVIGKKIVLYKESRDHKKIQ 93
>gi|299769009|ref|YP_003731035.1| putative RNA-binding protein [Acinetobacter oleivorans DR1]
gi|298699097|gb|ADI89662.1| putative RNA-binding protein [Acinetobacter oleivorans DR1]
Length = 107
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L++ E+K L H L + ++G G+TD V+ + L +EL+K+KI
Sbjct: 1 MAALSIHERKRLRQIGHVLNPVV---MIGGQGLTDAVIEETLRALNDHELIKVKI----A 53
Query: 86 GELEDV----VKQLEEATGSAVVSQIGQTVIIYRPS 117
GE + ++ + EATG+ V +IG+ V++Y+ +
Sbjct: 54 GEDREARTATIEAIVEATGAEAVQKIGKIVLLYKKA 89
>gi|332526115|ref|ZP_08402253.1| hypothetical protein RBXJA2T_09677 [Rubrivivax benzoatilyticus JA2]
gi|332109958|gb|EGJ10586.1| hypothetical protein RBXJA2T_09677 [Rubrivivax benzoatilyticus JA2]
Length = 157
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT E+K+ + AH L + L+G G+T VV L A+ L+K++I
Sbjct: 1 MPAIELTPAERKQHRADAHHLDPVV---LIGADGLTPAVVKETDAALNAHGLIKVRIFSD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL--EEKKQQARRVYVRKESK 140
++ QL +A V QIG+ ++++RP + K E++K R V + K SK
Sbjct: 58 DRNARAAMMAQLAGELNAAPVQQIGKLLVLWRPIPAKEKTEREDRKPGPRVVKLVKFSK 116
>gi|313896291|ref|ZP_07829844.1| RNA-binding protein, YhbY family [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975090|gb|EFR40552.1| RNA-binding protein, YhbY family [Selenomonas sp. oral taxon 137
str. F0430]
Length = 99
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
++GK GV+ VVTS E ++ EL+K+++ + P E D + L E + +V IG+
Sbjct: 26 MIGKEGVSPAVVTSAREAIKKRELIKVRVLQNAPDEPVDAITVLAERADANLVQVIGRNG 85
Query: 112 IIYRPSLTRMKLE 124
+++R + + ++E
Sbjct: 86 LLFRRNFDQPRIE 98
>gi|241763936|ref|ZP_04761978.1| protein of unknown function UPF0044 [Acidovorax delafieldii 2AN]
gi|241366759|gb|EER61200.1| protein of unknown function UPF0044 [Acidovorax delafieldii 2AN]
Length = 157
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT E++E + AH L + LVG G+T V L A+ L+K++I
Sbjct: 1 MPQIQLTPAERREHRANAHHLDPVV---LVGGDGLTPAVQKEIDAALNAHGLIKVRIFND 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMK-LEEKKQQA-RRVYVRKESK 140
E + +QL +A + IG+ V+++RP + + L+E + R V V K SK
Sbjct: 58 DRTARELMYQQLAADLNAAPIQHIGKLVVLWRPQPAKERTLDENRMPGPRDVKVLKYSK 116
>gi|381394394|ref|ZP_09920111.1| RNA-binding protein [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379329996|dbj|GAB55244.1| RNA-binding protein [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 98
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L AH L K QL G +G+T+GV+ L +EL+K+K+ E
Sbjct: 3 LTNKQKQYLTGLAHPL--KAVVQL-GNNGLTEGVLAEIDSALSHHELIKVKVVSDGRDEK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + T S V IG ++IY+PS
Sbjct: 60 TLIMDAIVGETNSVKVQSIGNVLVIYKPS 88
>gi|294507349|ref|YP_003571407.1| hypothetical protein SRM_01534 [Salinibacter ruber M8]
gi|294343677|emb|CBH24455.1| Conserved hypothetical protein containing CRS1 / YhbY domain
superfamily [Salinibacter ruber M8]
Length = 107
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+LT +++ L S AH + +GK GVTD V+ + E EL+ I++ P
Sbjct: 4 RLTSRQRAHLRSEAHGQDPLVH---IGKEGVTDAVMQAVEEAFNTRELVTIRVLDNAPRP 60
Query: 88 LEDVVKQLEEATGSA-VVSQIGQTVIIYRP 116
+ +V + + +A VV IG T + YRP
Sbjct: 61 VREVAEAVADALEDVQVVRTIGGTALFYRP 90
>gi|120597891|ref|YP_962465.1| hypothetical protein Sputw3181_1061 [Shewanella sp. W3-18-1]
gi|126175448|ref|YP_001051597.1| hypothetical protein Sbal_3248 [Shewanella baltica OS155]
gi|146293937|ref|YP_001184361.1| hypothetical protein Sputcn32_2843 [Shewanella putrefaciens CN-32]
gi|153001799|ref|YP_001367480.1| hypothetical protein Shew185_3290 [Shewanella baltica OS185]
gi|160876532|ref|YP_001555848.1| hypothetical protein Sbal195_3426 [Shewanella baltica OS195]
gi|217972306|ref|YP_002357057.1| hypothetical protein Sbal223_1119 [Shewanella baltica OS223]
gi|373950579|ref|ZP_09610540.1| RNA-binding, CRM domain-containing protein [Shewanella baltica
OS183]
gi|378709737|ref|YP_005274631.1| hypothetical protein [Shewanella baltica OS678]
gi|386314689|ref|YP_006010854.1| hypothetical protein [Shewanella putrefaciens 200]
gi|386323584|ref|YP_006019701.1| RNA-binding, CRM domain-containing protein [Shewanella baltica
BA175]
gi|386342191|ref|YP_006038557.1| RNA-binding, CRM domain-containing protein [Shewanella baltica
OS117]
gi|418025554|ref|ZP_12664532.1| RNA-binding, CRM domain protein [Shewanella baltica OS625]
gi|120557984|gb|ABM23911.1| protein of unknown function UPF0044 [Shewanella sp. W3-18-1]
gi|125998653|gb|ABN62728.1| protein of unknown function UPF0044 [Shewanella baltica OS155]
gi|145565627|gb|ABP76562.1| protein of unknown function UPF0044 [Shewanella putrefaciens CN-32]
gi|151366417|gb|ABS09417.1| protein of unknown function UPF0044 [Shewanella baltica OS185]
gi|160862054|gb|ABX50588.1| protein of unknown function UPF0044 [Shewanella baltica OS195]
gi|217497441|gb|ACK45634.1| protein of unknown function UPF0044 [Shewanella baltica OS223]
gi|315268726|gb|ADT95579.1| protein of unknown function UPF0044 [Shewanella baltica OS678]
gi|319427314|gb|ADV55388.1| protein of unknown function UPF0044 [Shewanella putrefaciens 200]
gi|333817729|gb|AEG10395.1| RNA-binding, CRM domain protein [Shewanella baltica BA175]
gi|334864592|gb|AEH15063.1| RNA-binding, CRM domain protein [Shewanella baltica OS117]
gi|353535166|gb|EHC04730.1| RNA-binding, CRM domain protein [Shewanella baltica OS625]
gi|373887179|gb|EHQ16071.1| RNA-binding, CRM domain-containing protein [Shewanella baltica
OS183]
Length = 99
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ L AH L L+G +G+T+GV+ L +EL+K+K+ + E
Sbjct: 2 NLTTKQKQHLKGLAHPLKP---VVLLGANGLTEGVLAEIESALAYHELIKVKV-ASADRE 57
Query: 88 LED-VVKQLEEATGSAVVSQIGQTVIIYRPS 117
L++ +V + T SA V IG ++IYR S
Sbjct: 58 LKNAIVDAIVRETQSAKVQLIGHILVIYRQS 88
>gi|262278060|ref|ZP_06055845.1| RNA-binding protein [Acinetobacter calcoaceticus RUH2202]
gi|262258411|gb|EEY77144.1| RNA-binding protein [Acinetobacter calcoaceticus RUH2202]
Length = 107
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L++ E+K L H L + ++G G+TD V+ + L +EL+K+KI
Sbjct: 1 MAALSIHERKRLRQIGHVLNPVV---MIGGQGLTDAVIEETLRALNDHELIKVKI----A 53
Query: 86 GELEDV----VKQLEEATGSAVVSQIGQTVIIYRPS 117
GE + + + EATG+ V +IG+ V++Y+ +
Sbjct: 54 GEDREARTATIDAIVEATGAQAVQKIGKIVLLYKKA 89
>gi|383759179|ref|YP_005438164.1| hypothetical protein RGE_33260 [Rubrivivax gelatinosus IL144]
gi|381379848|dbj|BAL96665.1| hypothetical protein RGE_33260 [Rubrivivax gelatinosus IL144]
Length = 157
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT E+K+ + AH L + L+G G+T VV L+A+ L+K++I
Sbjct: 1 MPAIELTPAERKQHRADAHHLDPVV---LIGADGLTPAVVKETDAALKAHGLIKVRIFSD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL--EEKKQQARRVYVRKESK 140
++ QL +A V QIG+ ++++RP + K E++K R V + K SK
Sbjct: 58 DRNARAAMMAQLAGELNAAPVQQIGKLLVLWRPIPAKEKTEREDRKPGPRVVKLVKFSK 116
>gi|194098120|ref|YP_002001168.1| hypothetical protein NGK_0543 [Neisseria gonorrhoeae NCCP11945]
gi|293399467|ref|ZP_06643620.1| RNA-binding protein [Neisseria gonorrhoeae F62]
gi|385335307|ref|YP_005889254.1| hypothetical protein NGTW08_0419 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|193933410|gb|ACF29234.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|291610036|gb|EFF39158.1| RNA-binding protein [Neisseria gonorrhoeae F62]
gi|317163850|gb|ADV07391.1| hypothetical protein NGTW08_0419 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 106
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 17 KLNTKEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAE 73
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + V IG+ ++++R ++
Sbjct: 74 RIEICNTLCEAVDAQPVRHIGKLLVLWRKNI 104
>gi|255067623|ref|ZP_05319478.1| CRS1 / YhbY domain protein [Neisseria sicca ATCC 29256]
gi|340362199|ref|ZP_08684594.1| CRS1/YhbY domain protein [Neisseria macacae ATCC 33926]
gi|349609394|ref|ZP_08888789.1| hypothetical protein HMPREF1028_00764 [Neisseria sp. GT4A_CT1]
gi|419795776|ref|ZP_14321357.1| RNA-binding protein, YhbY family [Neisseria sicca VK64]
gi|255048097|gb|EET43561.1| CRS1 / YhbY domain protein [Neisseria sicca ATCC 29256]
gi|339887726|gb|EGQ77254.1| CRS1/YhbY domain protein [Neisseria macacae ATCC 33926]
gi|348611955|gb|EGY61583.1| hypothetical protein HMPREF1028_00764 [Neisseria sp. GT4A_CT1]
gi|385700139|gb|EIG30395.1| RNA-binding protein, YhbY family [Neisseria sicca VK64]
Length = 94
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ KE EL + AH L + +VG+ G+T+ V+ L A+EL+K+++ E
Sbjct: 5 KLSTKEILELKARAHHLHPVV---MVGQQGLTESVIKETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + +V IG+ ++++R +L
Sbjct: 62 RVEICNALCEAVDAQLVQHIGKLLVLWRKNL 92
>gi|310658674|ref|YP_003936395.1| putative RNA-binding protein [[Clostridium] sticklandii]
gi|308825452|emb|CBH21490.1| putative RNA-binding protein [[Clostridium] sticklandii]
Length = 97
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 39 SYAHSLGKKLKCQ-LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
+Y SL L+ +GK G+TD V S E LE E+LKI+I + +D L +
Sbjct: 8 AYLKSLANNLEVMSHIGKEGITDSVKASIEEALEKREILKIRILENSGLDTKDTANTLAQ 67
Query: 98 ATGSAVVSQIGQTVIIYRPS 117
+ V IG T +Y+ S
Sbjct: 68 EINAEFVQAIGFTFTLYKKS 87
>gi|237742206|ref|ZP_04572687.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|256845479|ref|ZP_05550937.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
gi|229429854|gb|EEO40066.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|256719038|gb|EEU32593.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
Length = 99
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK G+ ++ S ++ + + EL+K+KI + C E + +L + VV IG+T+I
Sbjct: 22 IGKDGLNQNIIQSILDAIASRELIKVKILQNCEEEKTIIYSKLMDIKDFEVVGMIGRTII 81
Query: 113 IYRPS 117
I++ +
Sbjct: 82 IFKEN 86
>gi|424794855|ref|ZP_18220777.1| hypothetical protein XTG29_02780 [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|440732879|ref|ZP_20912672.1| hypothetical protein A989_14942 [Xanthomonas translucens DAR61454]
gi|422795733|gb|EKU24368.1| hypothetical protein XTG29_02780 [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|440366053|gb|ELQ03139.1| hypothetical protein A989_14942 [Xanthomonas translucens DAR61454]
Length = 101
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ +G GVT + E LE +EL+K+K+
Sbjct: 5 LTPSQNRFLRGLAHDLKPLLQ---IGGKGVTPAFLAELDEVLERHELVKVKVGGDDREAR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + L E + S +V +IG T I+YRP+
Sbjct: 62 DASIASLVEQSHSVLVQRIGHTAILYRPA 90
>gi|192359755|ref|YP_001983135.1| hypothetical protein CJA_2676 [Cellvibrio japonicus Ueda107]
gi|190685920|gb|ACE83598.1| hypothetical protein CJA_2676 [Cellvibrio japonicus Ueda107]
Length = 101
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 34 KKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVK 93
KK+ + H L + + +G+++GVV L+ +EL+K+K+ E + VV+
Sbjct: 8 KKQFRTIGHKLNPIVT---IAGNGLSEGVVAELTRALDDHELIKVKLALAEREERKLVVE 64
Query: 94 QLEEATGSAVVSQIGQTVIIYRPS 117
+L E G ++ +IG+ V++Y+P+
Sbjct: 65 ELAELPGVEIIQEIGKVVLLYKPN 88
>gi|424744755|ref|ZP_18173039.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-141]
gi|422942655|gb|EKU37701.1| RNA-binding protein, YhbY family [Acinetobacter baumannii WC-141]
Length = 107
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L++ E+K L H L + ++G G+TD V+ + L +EL+K+KI
Sbjct: 1 MAALSIHERKRLRQIGHVLNPVV---MIGGQGLTDAVIEETLRALNDHELIKVKI----A 53
Query: 86 GELEDV----VKQLEEATGSAVVSQIGQTVIIYRPS 117
GE + + + EATG+ V +IG+ V++Y+ +
Sbjct: 54 GEDREARTATIDAIVEATGAEAVQKIGKIVLLYKKA 89
>gi|77359817|ref|YP_339392.1| RNA binding protein; ancient RNA-binding IF3-C fold
[Pseudoalteromonas haloplanktis TAC125]
gi|76874728|emb|CAI85949.1| RNA binding protein; ancient RNA-binding IF3-C fold
[Pseudoalteromonas haloplanktis TAC125]
Length = 98
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI----HRTC 84
L+ K+K+ L AHSL L+G +G+T+GVV LE +EL+K+K+ T
Sbjct: 3 LSNKQKQFLKGQAHSLKP---VVLLGSNGLTEGVVVEIQSALEIHELIKVKVPTDDRETK 59
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKK 127
E +V++ TG+ + IG T+++YR S EEKK
Sbjct: 60 ALIFEAIVRE----TGATKLQSIGHTIVLYRQS------EEKK 92
>gi|114777425|ref|ZP_01452422.1| hypothetical protein SPV1_14034 [Mariprofundus ferrooxydans PV-1]
gi|114552207|gb|EAU54709.1| hypothetical protein SPV1_14034 [Mariprofundus ferrooxydans PV-1]
Length = 92
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ KE+KEL + AH L ++ +G+ G+T+ +V + L+ +EL+K+ I E
Sbjct: 3 LSSKERKELKARAHHLKPVIR---IGQKGITENLVLETEQALDTHELIKVHIAGENGSEC 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
+ +L + + VV IG+T I+YR T+
Sbjct: 60 KASGLELARQSHAEVVDHIGKTTILYRKQQTQ 91
>gi|431741775|ref|ZP_19530676.1| RNA-binding protein YhbY [Enterococcus faecium E2039]
gi|430601117|gb|ELB38733.1| RNA-binding protein YhbY [Enterococcus faecium E2039]
Length = 103
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L S AH L + +GK G+ ++ E LE EL+K+ + + E+
Sbjct: 6 KQKRFLRSQAHHLQPIFQ---IGKGGINSAMIVQIEEALEKRELIKVSLLQNTDEVAEEA 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ LE+ +V IG+ +++Y+PS
Sbjct: 63 AQVLEKEIDCEIVQIIGRVIVLYKPS 88
>gi|390575961|ref|ZP_10256041.1| hypothetical protein WQE_45968 [Burkholderia terrae BS001]
gi|420256112|ref|ZP_14758973.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Burkholderia sp. BT03]
gi|389932102|gb|EIM94150.1| hypothetical protein WQE_45968 [Burkholderia terrae BS001]
gi|398043826|gb|EJL36697.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Burkholderia sp. BT03]
Length = 180
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 9/96 (9%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P K++ +++ EL S AH+L + +VG G+TD V+T L+A++L+KI R
Sbjct: 1 MPALKVSSEQRAELRSQAHALKPVV---IVGAEGLTDAVLTEIKVHLKAHQLIKI---RV 54
Query: 84 CPGELEDVVKQLEEAT---GSAVVSQIGQTVIIYRP 116
E ED + +E +A + IG+ ++I++P
Sbjct: 55 FGDEREDRIAIYDEICDRLSAAPIQHIGKLLVIWKP 90
>gi|296328423|ref|ZP_06870949.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|296154497|gb|EFG95289.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 99
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK G+ ++ S ++ + + EL+K+KI + C E + +L + VV IG+T+I
Sbjct: 22 IGKDGLNQNIIQSILDAIASRELIKVKILQNCEEEKTIIYSKLMDIKDFEVVGMIGRTII 81
Query: 113 IYRPS 117
I++ +
Sbjct: 82 IFKEN 86
>gi|427414360|ref|ZP_18904550.1| hypothetical protein HMPREF9282_01957 [Veillonella ratti
ACS-216-V-Col6b]
gi|425714736|gb|EKU77739.1| hypothetical protein HMPREF9282_01957 [Veillonella ratti
ACS-216-V-Col6b]
Length = 95
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K+K+ L + A ++ ++GK G+ D V+ S + A EL+K+K+ P +
Sbjct: 1 MTGKQKRFLRALASTMPA---VVMIGKGGLEDAVIDSARAAITARELIKVKVLNNAPVDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
E+ ++L + G+ +V IG ++Y+
Sbjct: 58 EETFEELADMLGAELVQVIGHNGVLYK 84
>gi|291044275|ref|ZP_06569984.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291011169|gb|EFE03165.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 106
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 17 KLNTKEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAE 73
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + V IG+ ++++R ++
Sbjct: 74 RIEICNTLCEAVDAQPVRHIGKLLVLWRKNI 104
>gi|347819406|ref|ZP_08872840.1| hypothetical protein VeAt4_09605 [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 158
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT E++E + AH L + L+G +G++ V L A+ L+K+++
Sbjct: 1 MPAIQLTPAERREHRAQAHHLDPVV---LIGGAGLSAAVTREVDAALNAHGLIKVRVAHD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + +QL A +A + IG+ ++++RP
Sbjct: 58 DRAARELMYQQLATALDAAPIQHIGKLLVLWRP 90
>gi|384419698|ref|YP_005629058.1| hypothetical protein XOC_2783 [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353462611|gb|AEQ96890.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 101
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ G GVT + + LE +EL+K+K+
Sbjct: 5 LTSAQNRFLRGQAHDLKALLQ---TGGKGVTPAFLAELEDVLERHELIKVKVASQDRETR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+ ++ +L E T SA+V +IG I+YRP
Sbjct: 62 DALIAELIEQTCSALVQRIGHVAILYRP 89
>gi|149927096|ref|ZP_01915354.1| hypothetical protein LMED105_09582 [Limnobacter sp. MED105]
gi|149824317|gb|EDM83537.1| hypothetical protein LMED105_09582 [Limnobacter sp. MED105]
Length = 123
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT EKK L + AH+L + L+G G+T VV L A+ L+K+++
Sbjct: 9 LTPAEKKALKAQAHALDPVV---LIGDKGLTPNVVKEIDMNLNAHGLIKVRVAGDDREAR 65
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+ + + + TG+A+V IG+ ++++RP
Sbjct: 66 LEYAQAICDETGAALVQHIGKLLVLFRP 93
>gi|121607216|ref|YP_995023.1| hypothetical protein Veis_0213 [Verminephrobacter eiseniae EF01-2]
gi|121551856|gb|ABM56005.1| protein of unknown function UPF0044 [Verminephrobacter eiseniae
EF01-2]
Length = 158
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT + +E ++AH L + L+G G+T V+ L A+ L+K+++
Sbjct: 1 MPSIELTPAQCREQRAHAHRLAPVV---LIGSDGLTPAVLREIDAALNAHGLIKVRVFND 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL--EEKKQQARRVYVRKESK 140
E + +QL +A V IG+ ++++RP + ++ E++ R V V K SK
Sbjct: 58 DRAARERMYQQLTADLNAAPVQHIGKLLVLWRPLPVKERVVDEDRGPGPRDVRVLKYSK 116
>gi|167562361|ref|ZP_02355277.1| CRS1 / YhbY domain family protein [Burkholderia oklahomensis EO147]
gi|167574342|ref|ZP_02367216.1| CRS1 / YhbY domain family protein [Burkholderia oklahomensis C6786]
Length = 184
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLAEIKVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
E + ++ + +A + IG+ ++I++P + EE Q+ RR
Sbjct: 58 ERDERVAIYDEICDRLSAAPIQHIGKLLVIWKPE----QAEEAPQRGRR 102
>gi|416172575|ref|ZP_11608768.1| CRS1 / YhbY domain protein [Neisseria meningitidis OX99.30304]
gi|325129968|gb|EGC52767.1| CRS1 / YhbY domain protein [Neisseria meningitidis OX99.30304]
Length = 94
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLNTKEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + V IG+ ++++R ++
Sbjct: 62 RVEICNALCEAVDAQPVQHIGKLLVLWRKNI 92
>gi|293571009|ref|ZP_06682052.1| conserved hypothetical protein [Enterococcus faecium E980]
gi|424833433|ref|ZP_18258157.1| RNA-binding protein, YhbY family [Enterococcus faecium R501]
gi|424984137|ref|ZP_18396688.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV69]
gi|424987608|ref|ZP_18399979.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV38]
gi|425057710|ref|ZP_18461116.1| RNA-binding protein, YhbY family [Enterococcus faecium 504]
gi|430821233|ref|ZP_19439845.1| RNA-binding protein YhbY [Enterococcus faecium E0045]
gi|430827027|ref|ZP_19445195.1| RNA-binding protein YhbY [Enterococcus faecium E0164]
gi|430829409|ref|ZP_19447502.1| RNA-binding protein YhbY [Enterococcus faecium E0269]
gi|430833623|ref|ZP_19451634.1| RNA-binding protein YhbY [Enterococcus faecium E0679]
gi|430836931|ref|ZP_19454907.1| RNA-binding protein YhbY [Enterococcus faecium E0680]
gi|430839013|ref|ZP_19456955.1| RNA-binding protein YhbY [Enterococcus faecium E0688]
gi|430840825|ref|ZP_19458747.1| RNA-binding protein YhbY [Enterococcus faecium E1007]
gi|430859777|ref|ZP_19477386.1| RNA-binding protein YhbY [Enterococcus faecium E1552]
gi|430869738|ref|ZP_19482938.1| RNA-binding protein YhbY [Enterococcus faecium E1575]
gi|431067594|ref|ZP_19494013.1| RNA-binding protein YhbY [Enterococcus faecium E1604]
gi|431099488|ref|ZP_19496654.1| RNA-binding protein YhbY [Enterococcus faecium E1613]
gi|431188242|ref|ZP_19500154.1| RNA-binding protein YhbY [Enterococcus faecium E1620]
gi|431446125|ref|ZP_19513807.1| RNA-binding protein YhbY [Enterococcus faecium E1630]
gi|431738176|ref|ZP_19527121.1| RNA-binding protein YhbY [Enterococcus faecium E1972]
gi|431745632|ref|ZP_19534476.1| RNA-binding protein YhbY [Enterococcus faecium E2134]
gi|431760683|ref|ZP_19549280.1| RNA-binding protein YhbY [Enterococcus faecium E3346]
gi|431765841|ref|ZP_19554342.1| RNA-binding protein YhbY [Enterococcus faecium E4215]
gi|291608935|gb|EFF38214.1| conserved hypothetical protein [Enterococcus faecium E980]
gi|402922554|gb|EJX42920.1| RNA-binding protein, YhbY family [Enterococcus faecium R501]
gi|402969776|gb|EJX86162.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV69]
gi|402974020|gb|EJX90094.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV38]
gi|403040022|gb|EJY51129.1| RNA-binding protein, YhbY family [Enterococcus faecium 504]
gi|430438670|gb|ELA49081.1| RNA-binding protein YhbY [Enterococcus faecium E0045]
gi|430444573|gb|ELA54411.1| RNA-binding protein YhbY [Enterococcus faecium E0164]
gi|430480848|gb|ELA58019.1| RNA-binding protein YhbY [Enterococcus faecium E0269]
gi|430486028|gb|ELA62896.1| RNA-binding protein YhbY [Enterococcus faecium E0679]
gi|430487712|gb|ELA64420.1| RNA-binding protein YhbY [Enterococcus faecium E0680]
gi|430491010|gb|ELA67492.1| RNA-binding protein YhbY [Enterococcus faecium E0688]
gi|430494781|gb|ELA71010.1| RNA-binding protein YhbY [Enterococcus faecium E1007]
gi|430543314|gb|ELA83389.1| RNA-binding protein YhbY [Enterococcus faecium E1552]
gi|430559427|gb|ELA98777.1| RNA-binding protein YhbY [Enterococcus faecium E1575]
gi|430568019|gb|ELB07077.1| RNA-binding protein YhbY [Enterococcus faecium E1604]
gi|430570989|gb|ELB09928.1| RNA-binding protein YhbY [Enterococcus faecium E1613]
gi|430572524|gb|ELB11376.1| RNA-binding protein YhbY [Enterococcus faecium E1620]
gi|430585769|gb|ELB24041.1| RNA-binding protein YhbY [Enterococcus faecium E1630]
gi|430597614|gb|ELB35397.1| RNA-binding protein YhbY [Enterococcus faecium E1972]
gi|430610388|gb|ELB47540.1| RNA-binding protein YhbY [Enterococcus faecium E2134]
gi|430623768|gb|ELB60446.1| RNA-binding protein YhbY [Enterococcus faecium E3346]
gi|430627558|gb|ELB64049.1| RNA-binding protein YhbY [Enterococcus faecium E4215]
Length = 103
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L S AH L + +GK G+ ++ E LE EL+K+ + + E+
Sbjct: 6 KQKRFLRSQAHHLQPIFQ---IGKGGINSAMIVQIEEALEKRELIKVSLLQNTDEIAEEA 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ LE+ +V IG+ +++Y+PS
Sbjct: 63 AQVLEKEIDCEIVQIIGRVIVLYKPS 88
>gi|348590527|ref|YP_004874989.1| RNA binding protein [Taylorella asinigenitalis MCE3]
gi|347974431|gb|AEP36966.1| RNA binding protein [Taylorella asinigenitalis MCE3]
Length = 195
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 11/92 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTC 84
KL+ KEK L S AHSL + ++G +G+T+ V+ L A+ L+KIK+ R+
Sbjct: 9 KLSSKEKSLLRSSAHSLKPVV---MIGDNGLTESVLQEIDHNLNAHGLIKIKVAGDDRSY 65
Query: 85 PGELED-VVKQLEEATGSAVVSQIGQTVIIYR 115
EL D ++K L ++S +G+ + IYR
Sbjct: 66 RIELADQIIKNLN----CEIISHVGKILTIYR 93
>gi|253999581|ref|YP_003051644.1| hypothetical protein Msip34_1875 [Methylovorus glucosetrophus
SIP3-4]
gi|313201616|ref|YP_004040274.1| hypothetical protein MPQ_1885 [Methylovorus sp. MP688]
gi|253986260|gb|ACT51117.1| protein of unknown function UPF0044 [Methylovorus glucosetrophus
SIP3-4]
gi|312440932|gb|ADQ85038.1| conserved hypothetical protein [Methylovorus sp. MP688]
Length = 97
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+P+L K+ L + H+L + ++G +G+TD V+ +L+A+EL+KIK+
Sbjct: 1 MPELNSKQISHLRALGHNLNPVV---MIGNNGLTDTVLKEIEVSLKAHELIKIKVFGDDR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++++ E T + + IG+ ++IYR
Sbjct: 58 AARVSMLQEICEKTHATAIHHIGKQLVIYR 87
>gi|326317395|ref|YP_004235067.1| hypothetical protein Acav_2588 [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323374231|gb|ADX46500.1| protein of unknown function UPF0044 [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 158
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT E++E + AH L + ++G G+T V L A+ L+K++I
Sbjct: 1 MPQIQLTPAERREHRANAHHLDPVV---MIGGDGLTAAVQKEVDAALSAHGLIKVRILGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL--EEKKQQARRVYVRKESK 140
+ + +QL + +A + IG+ ++++RP + K E++ R V V K SK
Sbjct: 58 DRAARDQIYQQLADELDAAPIQHIGKLIVLWRPPAKKAKAIDEDRMPGPRDVKVLKFSK 116
>gi|194290077|ref|YP_002005984.1| RNA_binding protein [Cupriavidus taiwanensis LMG 19424]
gi|193223912|emb|CAQ69921.1| putative RNA_binding protein [Cupriavidus taiwanensis LMG 19424]
Length = 167
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +L ++ +L S AH+L + +VG G+T V+ +L A++L+KI++
Sbjct: 1 MPALQLVPAQRSDLRSRAHALNPVV---MVGAEGLTRAVLAEIDRSLAAHDLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRK 137
+ +++ + +A + IG+ ++++RP R+K + R R+
Sbjct: 58 DREARIAIYEEICDQLSAAPIQHIGKLLVVWRPGEARLKENQADDLGRHTPARR 111
>gi|19704544|ref|NP_604106.1| RNA binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19714830|gb|AAL95405.1| Hypothetical RNA binding protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 99
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK G+ ++ S ++ + + EL+K+KI + C E + +L + VV IG+T+I
Sbjct: 22 IGKDGLNQNIIQSILDAIASRELIKVKILQNCEEEKTIIYSKLMDIKDFEVVGMIGRTII 81
Query: 113 IYRPS 117
I++ +
Sbjct: 82 IFKEN 86
>gi|47093435|ref|ZP_00231200.1| conserved hypothetical protein TIGR00253 [Listeria monocytogenes
str. 4b H7858]
gi|47018214|gb|EAL08982.1| conserved hypothetical protein TIGR00253 [Listeria monocytogenes
str. 4b H7858]
Length = 104
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 10 SEAVEEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIET 69
+ A+ + +S +R+ LT +K+ L AH++ + VGK V+ ++ E
Sbjct: 6 TRAITDERSSTRTIRRKLMLTATQKRFLRKEAHNIQPIFQ---VGKGSVSPNLIIHVKEA 62
Query: 70 LEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
LEA EL+KI I + C + + V +++ +G+ +V IG+T+
Sbjct: 63 LEARELIKISILQNCEEDKQTVAEKISARSGAEIVQVIGRTI 104
>gi|168038664|ref|XP_001771820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676951|gb|EDQ63428.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1106
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 16 VKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANE 74
V+SPS + L LP+ ++ + +LG +L+ +L +G+ GVT G+V + + +E
Sbjct: 315 VRSPSVAELTLPEPELRRLR-------TLGLQLQGRLKIGRLGVTPGIVEAIHDRWRTSE 367
Query: 75 LLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
L K+K ++ + LE TG V+ + G ++YR
Sbjct: 368 LAKVKCDAPLSMNMKKAHEDLERLTGGLVIWRAGSAAVVYR 408
>gi|121634593|ref|YP_974838.1| hypothetical protein NMC0752 [Neisseria meningitidis FAM18]
gi|254804678|ref|YP_003082899.1| putative RNA-binding protein [Neisseria meningitidis alpha14]
gi|385328134|ref|YP_005882437.1| hypothetical protein NMBB_0904 [Neisseria meningitidis alpha710]
gi|385337752|ref|YP_005891625.1| CRS2-associated factor [Neisseria meningitidis WUE 2594]
gi|416188195|ref|ZP_11614664.1| CRS1 / YhbY domain protein [Neisseria meningitidis M0579]
gi|416213910|ref|ZP_11622603.1| CRS1 / YhbY domain protein [Neisseria meningitidis M01-240013]
gi|120866299|emb|CAM10040.1| hypothetical protein NMC0752 [Neisseria meningitidis FAM18]
gi|254668220|emb|CBA05000.1| putative RNA-binding protein [Neisseria meningitidis alpha14]
gi|254670626|emb|CBA06625.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|308388986|gb|ADO31306.1| hypothetical protein NMBB_0904 [Neisseria meningitidis alpha710]
gi|319410166|emb|CBY90502.1| CRS2-associated factor 1, chloroplastic Chloroplastic group IIA
intron splicing facilitator CRS2-associated factor 1;
Flags: Precursor [Neisseria meningitidis WUE 2594]
gi|325135978|gb|EGC58588.1| CRS1 / YhbY domain protein [Neisseria meningitidis M0579]
gi|325144163|gb|EGC66470.1| CRS1 / YhbY domain protein [Neisseria meningitidis M01-240013]
gi|389606112|emb|CCA45025.1| CRS2-associated factor 1, chloroplastic Chloroplastic group IIA
intron splicing facilitator CRS2-associated factor 1,
precursor [Neisseria meningitidis alpha522]
Length = 106
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 17 KLNTKEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAE 73
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + V IG+ ++++R ++
Sbjct: 74 RIEICTALCEAVDAQPVQHIGKLLVLWRKNI 104
>gi|254302947|ref|ZP_04970305.1| possible RNA binding protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323139|gb|EDK88389.1| possible RNA binding protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 99
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK G+ +V S ++ + + EL+K+KI + C E + +L + VV +G+T+I
Sbjct: 22 IGKDGLNQNIVQSILDAIASRELIKVKILQNCEEEKTIIYSKLMDIKDFEVVGMVGRTII 81
Query: 113 IYRPS 117
I++ +
Sbjct: 82 IFKEN 86
>gi|260437113|ref|ZP_05790929.1| putative RNA-binding protein YqeI [Butyrivibrio crossotus DSM 2876]
gi|292810425|gb|EFF69630.1| putative RNA-binding protein YqeI [Butyrivibrio crossotus DSM 2876]
Length = 105
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L A ++ +C GKS VT V + E LE EL+KI + + C +
Sbjct: 1 MTTKQRAYLKGLAMTIEPIFQC---GKSSVTPDFVKAVSEALEKRELIKISVLQNCADDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++ + E T S +V IG+ +++Y+
Sbjct: 58 KEIGIMISERTRSELVQVIGKKIVLYK 84
>gi|423349238|ref|ZP_17326894.1| YhbY family putative RNA-binding protein [Scardovia wiggsiae F0424]
gi|393703467|gb|EJD65668.1| YhbY family putative RNA-binding protein [Scardovia wiggsiae F0424]
Length = 121
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 18 SPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLV-GKSGVTDGVVTSFIETLEANELL 76
+PS + P+L V K +L SL ++K L+ GK+ +TD V+ T+E EL+
Sbjct: 10 APSGAHSAAPQLAVLTKAQLKKL-RSLSHRIKPLLIIGKNNITDAVLRQADSTIEQRELI 68
Query: 77 KIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
K ++ E+ L E G+AVV+ IG +++R S
Sbjct: 69 KCQVLGESEVTAEEAASDLAEKLGAAVVTVIGNRAVLFRRS 109
>gi|375336636|ref|ZP_09777980.1| hypothetical protein SbacW_06573 [Succinivibrionaceae bacterium
WG-1]
Length = 99
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 47 KLKCQ------LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATG 100
KLK Q ++GK+G+T+ V+ ++E +EL+K+K H + E++ L A+
Sbjct: 12 KLKAQELKPVVMIGKNGITENVINEIKSSIEHHELIKVKAHVEDRTQKEELANYLANASE 71
Query: 101 SAVVSQIGQTVIIYR 115
S VV +G + +++
Sbjct: 72 STVVQYLGNNITLFK 86
>gi|357405163|ref|YP_004917087.1| hypothetical protein MEALZ_1807 [Methylomicrobium alcaliphilum 20Z]
gi|351717828|emb|CCE23493.1| conserved protein of unknown function [Methylomicrobium
alcaliphilum 20Z]
Length = 88
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T E+K+L + AHSL + ++G SG+T V+ L ++EL+K+KI R +
Sbjct: 1 MTPAERKQLKAQAHSLKPVV---IIGHSGLTQSVLAEMDIALNSHELIKVKI-RAERDDR 56
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + +++ TG+ V IGQ ++I+R
Sbjct: 57 KKIQQEICTQTGADFVQSIGQILVIHR 83
>gi|167626502|ref|YP_001677002.1| hypothetical protein Fphi_0285 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254877471|ref|ZP_05250181.1| RNA-binding protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|387886742|ref|YP_006317041.1| hypothetical protein OOM_1130 [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|167596503|gb|ABZ86501.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254843492|gb|EET21906.1| RNA-binding protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|386871558|gb|AFJ43565.1| hypothetical protein OOM_1130 [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 92
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+ VK+++ L + AH+L L+G+ G+T+ V+ L ++EL+K+K R E
Sbjct: 1 MDVKQQQNLKAQAHALKP---VVLMGEKGLTENVMLEIDLALASHELIKVKAGRLPKQEK 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++ ++ +AT S +V IG +++YR
Sbjct: 58 QEIAAEIVKATKSELVQIIGNILVLYR 84
>gi|59800828|ref|YP_207540.1| hypothetical protein NGO0384 [Neisseria gonorrhoeae FA 1090]
gi|240013701|ref|ZP_04720614.1| hypothetical protein NgonD_03465 [Neisseria gonorrhoeae DGI18]
gi|240016141|ref|ZP_04722681.1| hypothetical protein NgonFA_03063 [Neisseria gonorrhoeae FA6140]
gi|240120770|ref|ZP_04733732.1| hypothetical protein NgonPI_03138 [Neisseria gonorrhoeae PID24-1]
gi|268594435|ref|ZP_06128602.1| RNA-binding protein [Neisseria gonorrhoeae 35/02]
gi|268596431|ref|ZP_06130598.1| RNA-binding protein [Neisseria gonorrhoeae FA19]
gi|268603221|ref|ZP_06137388.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268681702|ref|ZP_06148564.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268683929|ref|ZP_06150791.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268686172|ref|ZP_06153034.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|59717723|gb|AAW89128.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|268547824|gb|EEZ43242.1| RNA-binding protein [Neisseria gonorrhoeae 35/02]
gi|268550219|gb|EEZ45238.1| RNA-binding protein [Neisseria gonorrhoeae FA19]
gi|268587352|gb|EEZ52028.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268621986|gb|EEZ54386.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268624213|gb|EEZ56613.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268626456|gb|EEZ58856.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
Length = 94
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLNTKEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + V IG+ ++++R ++
Sbjct: 62 RIEICNTLCEAVDAQPVRHIGKLLVLWRKNI 92
>gi|333913567|ref|YP_004487299.1| hypothetical protein DelCs14_1924 [Delftia sp. Cs1-4]
gi|333743767|gb|AEF88944.1| protein of unknown function UPF0044 [Delftia sp. Cs1-4]
Length = 157
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT E++E + AH L + L+G G+T V L A+ L+K+++
Sbjct: 1 MPQIQLTPAERREHRANAHHLDPVV---LIGGDGLTAAVQKEVNAGLNAHGLIKVRVFND 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + QL + G+A + IG+ ++++RP
Sbjct: 58 DRAAREQMYLQLCDELGAAPIQHIGKLLVLWRP 90
>gi|332535915|ref|ZP_08411625.1| RNA binding protein [Pseudoalteromonas haloplanktis ANT/505]
gi|359435691|ref|ZP_09225876.1| RNA-binding protein [Pseudoalteromonas sp. BSi20652]
gi|359443463|ref|ZP_09233302.1| RNA-binding protein [Pseudoalteromonas sp. BSi20429]
gi|392534126|ref|ZP_10281263.1| RNA binding protein; ancient RNA-binding IF3-C fold
[Pseudoalteromonas arctica A 37-1-2]
gi|332034702|gb|EGI71251.1| RNA binding protein [Pseudoalteromonas haloplanktis ANT/505]
gi|357917674|dbj|GAA62125.1| RNA-binding protein [Pseudoalteromonas sp. BSi20652]
gi|358034686|dbj|GAA69551.1| RNA-binding protein [Pseudoalteromonas sp. BSi20429]
Length = 98
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI----HRTC 84
L+ K+K+ L AHSL L+G +G+T+GVV LE +EL+K+K+ T
Sbjct: 3 LSNKQKQFLKGQAHSLKP---VVLLGSNGLTEGVVVEIQSALEIHELIKVKVPTDDRETK 59
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
E +V++ TG+ + IG T+++YR S+
Sbjct: 60 ALIFEAIVRE----TGATKLQTIGHTIVLYRQSV 89
>gi|257898962|ref|ZP_05678615.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|425055201|ref|ZP_18458686.1| RNA-binding protein, YhbY family [Enterococcus faecium 505]
gi|431595405|ref|ZP_19522165.1| RNA-binding protein YhbY [Enterococcus faecium E1861]
gi|431751399|ref|ZP_19540089.1| RNA-binding protein YhbY [Enterococcus faecium E2620]
gi|431758520|ref|ZP_19547147.1| RNA-binding protein YhbY [Enterococcus faecium E3083]
gi|257836874|gb|EEV61948.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|403034405|gb|EJY45857.1| RNA-binding protein, YhbY family [Enterococcus faecium 505]
gi|430590639|gb|ELB28695.1| RNA-binding protein YhbY [Enterococcus faecium E1861]
gi|430615515|gb|ELB52464.1| RNA-binding protein YhbY [Enterococcus faecium E2620]
gi|430617578|gb|ELB54451.1| RNA-binding protein YhbY [Enterococcus faecium E3083]
Length = 103
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L S AH L + +GK G+ ++ E LE EL+K+ + + E+
Sbjct: 6 KQKRFLRSKAHHLQPIFQ---IGKGGINSAMIVQIEEALEKRELIKVSLLQNTDEVAEEA 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ LE+ +V IG+ +++Y+PS
Sbjct: 63 AQVLEKEIDCEIVQIIGRVIVLYKPS 88
>gi|160900359|ref|YP_001565941.1| hypothetical protein Daci_4927 [Delftia acidovorans SPH-1]
gi|160365943|gb|ABX37556.1| protein of unknown function UPF0044 [Delftia acidovorans SPH-1]
Length = 157
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT E++E + AH L + L+G G+T V L A+ L+K+++
Sbjct: 1 MPQIQLTPAERREHRANAHHLDPVV---LIGGDGLTAAVQKEVNAGLNAHGLIKVRVFND 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + QL + G+A + IG+ ++++RP
Sbjct: 58 DRAAREQMYLQLCDELGAAPIQHIGKLLVLWRP 90
>gi|113461144|ref|YP_719212.1| hypothetical protein HS_1001 [Haemophilus somnus 129PT]
gi|112823187|gb|ABI25276.1| conserved hypothetical protein [Haemophilus somnus 129PT]
Length = 98
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L + ++G +G+T+GV+ L +EL+K+KI
Sbjct: 3 LSTKQKQFLKGLAHHLNPVV---MLGTNGLTEGVLAEIDNALNHHELIKVKISGAERETK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ +++ + T ++ V IG +++YRPS
Sbjct: 60 QLIIEAIVRETQASAVQTIGHVLVLYRPS 88
>gi|292493154|ref|YP_003528593.1| hypothetical protein Nhal_3154 [Nitrosococcus halophilus Nc4]
gi|291581749|gb|ADE16206.1| protein of unknown function UPF0044 [Nitrosococcus halophilus Nc4]
Length = 96
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L + AHSL + ++G++GVT+ V+ LE +EL+KIKI E
Sbjct: 3 LTKNQIRHLRALAHSLKPVV---IIGQNGVTEAVLEEINNALEHHELIKIKIQGAEREER 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++ + EAT + +V IG+ + YR
Sbjct: 60 SAMIEHVLEATQAELVQIIGRIGVFYR 86
>gi|259047029|ref|ZP_05737430.1| RNA-binding protein YhbY [Granulicatella adiacens ATCC 49175]
gi|259036348|gb|EEW37603.1| RNA-binding protein YhbY [Granulicatella adiacens ATCC 49175]
Length = 108
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
KE++ AHSL + +GK G+++ ++ +E EL+K+ + + E ++
Sbjct: 6 KERQFFKKEAHSLKPIFQ---IGKGGLSEEMIHQIQNAVEKRELIKVTLLQNTLEEPQEA 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + EATGS ++ IG T+++Y+ +
Sbjct: 63 AETIAEATGSTIIQVIGHTIVLYKEA 88
>gi|170717728|ref|YP_001784799.1| hypothetical protein HSM_1479 [Haemophilus somnus 2336]
gi|168825857|gb|ACA31228.1| protein of unknown function UPF0044 [Haemophilus somnus 2336]
Length = 98
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L + ++G +G+T+GV+ L +EL+K+KI
Sbjct: 3 LSTKQKQFLKGLAHHLNPVV---MLGTNGLTEGVLAEIDNALNHHELIKVKISGAERETK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ +++ + T ++ V IG +++YRPS
Sbjct: 60 QLIIEAIIRETQASAVQAIGHVLVLYRPS 88
>gi|254493297|ref|ZP_05106468.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268600915|ref|ZP_06135082.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|226512337|gb|EEH61682.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268585046|gb|EEZ49722.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
Length = 94
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLNTKEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + V IG+ ++++R ++
Sbjct: 62 RIEICNTLCEAVDAQPVRHIGKLLVLWRKNI 92
>gi|399516597|ref|ZP_10758194.1| RNA binding protein [Leuconostoc pseudomesenteroides 4882]
gi|398648506|emb|CCJ66221.1| RNA binding protein [Leuconostoc pseudomesenteroides 4882]
Length = 103
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S A++L VGK+G+T + + + EL+KI + + +
Sbjct: 3 LTGKQKRFLRSQANTLSPIFS---VGKNGLTTTWLEELVMAIAKRELIKISLQQGSEETV 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQ 129
+ V +E + +VV IG+TVI+Y P+ +EEK Q+
Sbjct: 60 DSVANYIETHSNISVVQTIGRTVILYLPA-----VEEKYQK 95
>gi|352517437|ref|YP_004886754.1| hypothetical protein TEH_12630 [Tetragenococcus halophilus NBRC
12172]
gi|348601544|dbj|BAK94590.1| hypothetical protein TEH_12630 [Tetragenococcus halophilus NBRC
12172]
Length = 103
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL K+K L S AH L + +GK G+ D ++ E LE EL+K+ + + E
Sbjct: 2 KLRGKQKSFLKSQAHHLQPIFQ---IGKGGLNDQLIVQIGEALEKRELIKVSLLQNTDEE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V LEE VV IG+ ++I++ S
Sbjct: 59 ASEVASILEEKLDCQVVQIIGRVLVIFKIS 88
>gi|406035561|ref|ZP_11042925.1| RNA binding protein [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 108
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L++ E+K L H+L + +VG G+T+ V+ L +EL+K+K+
Sbjct: 1 MAALSIHERKRLRQIGHALNPVV---MVGSHGLTENVIEETNRALNDHELIKVKV----A 53
Query: 86 GELED----VVKQLEEATGSAVVSQIGQTVIIYRPS 117
GE + V+ L EATG+ V +IG+ V++Y+ +
Sbjct: 54 GEDREARAAVIDALVEATGAESVQKIGKIVLLYKKA 89
>gi|148826010|ref|YP_001290763.1| 23S rRNA methyltransferase J [Haemophilus influenzae PittEE]
gi|260581321|ref|ZP_05849137.1| 23S rRNA methyltransferase J [Haemophilus influenzae RdAW]
gi|260582444|ref|ZP_05850235.1| 23S rRNA methyltransferase J [Haemophilus influenzae NT127]
gi|148716170|gb|ABQ98380.1| 23S rRNA methyltransferase J [Haemophilus influenzae PittEE]
gi|260091988|gb|EEW75935.1| 23S rRNA methyltransferase J [Haemophilus influenzae RdAW]
gi|260094424|gb|EEW78321.1| 23S rRNA methyltransferase J [Haemophilus influenzae NT127]
Length = 118
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 12 AVEEVKSPSRSPLP---LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIE 68
+V+ ++ +RS L + L+ K+K+ L AH L ++G +G+T+GV+
Sbjct: 3 SVKNIEKINRSFLLGILMTTLSTKQKQFLKGLAHHLNP---VVMLGGNGLTEGVLAEIEN 59
Query: 69 TLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
L +EL+K+K+ + ++ + T +A V IG +++YRPS
Sbjct: 60 ALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVLYRPS 108
>gi|323339580|ref|ZP_08079854.1| RNA-binding protein [Lactobacillus ruminis ATCC 25644]
gi|335996451|ref|ZP_08562368.1| RNA-binding protein [Lactobacillus ruminis SPM0211]
gi|417973880|ref|ZP_12614714.1| hypothetical protein ANHS_1401 [Lactobacillus ruminis ATCC 25644]
gi|323092975|gb|EFZ35573.1| RNA-binding protein [Lactobacillus ruminis ATCC 25644]
gi|335351521|gb|EGM53012.1| RNA-binding protein [Lactobacillus ruminis SPM0211]
gi|346329751|gb|EGX98036.1| hypothetical protein ANHS_1401 [Lactobacillus ruminis ATCC 25644]
Length = 103
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL K+K+ L S AH + + VGK G+T + + +E ELLKI + + E
Sbjct: 2 KLKGKQKRYLRSQAHGMRPLFQ---VGKEGLTANWLKQVEDAIEKRELLKINVLQNAIVE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
E+V++ +E+ + VV +IG +++++ + R
Sbjct: 59 DEEVIEYIEDNSQIQVVQKIGHVLVLFKQADKR 91
>gi|392948630|ref|ZP_10314235.1| RNA binding protein, YhbY family [Lactobacillus pentosus KCA1]
gi|334881685|emb|CCB82583.1| putative uncharacterized protein lp_1529 [Lactobacillus pentosus
MP-10]
gi|339636927|emb|CCC15752.1| putative uncharacterized protein lp_1529 [Lactobacillus pentosus
IG1]
gi|392436135|gb|EIW14054.1| RNA binding protein, YhbY family [Lactobacillus pentosus KCA1]
Length = 104
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
VGK+G+TD +T L+ EL+K+ I + DV +E+ T VV IG+ ++
Sbjct: 25 VGKNGLTDEWLTQLTGALDKRELIKVNILQNADVTTADVKAAIEQNTAITVVQTIGRVLV 84
Query: 113 IYRPS 117
+Y P+
Sbjct: 85 LYLPA 89
>gi|69245737|ref|ZP_00603603.1| Protein of unknown function UPF0044 [Enterococcus faecium DO]
gi|257880240|ref|ZP_05659893.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257883041|ref|ZP_05662694.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257891376|ref|ZP_05671029.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257893627|ref|ZP_05673280.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260560462|ref|ZP_05832636.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|261208979|ref|ZP_05923384.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289565209|ref|ZP_06445661.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|293563280|ref|ZP_06677730.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|294615007|ref|ZP_06694896.1| hypothetical protein EfmE1636_1086 [Enterococcus faecium E1636]
gi|294619097|ref|ZP_06698592.1| conserved hypothetical protein [Enterococcus faecium E1679]
gi|294621392|ref|ZP_06700564.1| conserved hypothetical protein [Enterococcus faecium U0317]
gi|314939218|ref|ZP_07846472.1| conserved hypothetical protein TIGR00253 [Enterococcus faecium
TX0133a04]
gi|314942036|ref|ZP_07848894.1| conserved hypothetical protein TIGR00253 [Enterococcus faecium
TX0133C]
gi|314948391|ref|ZP_07851780.1| conserved hypothetical protein TIGR00253 [Enterococcus faecium
TX0082]
gi|314951245|ref|ZP_07854300.1| conserved hypothetical protein TIGR00253 [Enterococcus faecium
TX0133A]
gi|314991668|ref|ZP_07857138.1| conserved hypothetical protein TIGR00253 [Enterococcus faecium
TX0133B]
gi|314996794|ref|ZP_07861807.1| conserved hypothetical protein TIGR00253 [Enterococcus faecium
TX0133a01]
gi|383328630|ref|YP_005354514.1| RNA-binding protein YhbY [Enterococcus faecium Aus0004]
gi|389868164|ref|YP_006375587.1| RNA-binding protein [Enterococcus faecium DO]
gi|415896214|ref|ZP_11550764.1| conserved hypothetical protein [Enterococcus faecium E4453]
gi|416138302|ref|ZP_11599018.1| conserved hypothetical protein [Enterococcus faecium E4452]
gi|424793014|ref|ZP_18219181.1| RNA-binding protein, YhbY family [Enterococcus faecium V689]
gi|424802805|ref|ZP_18228265.1| RNA-binding protein, YhbY family [Enterococcus faecium S447]
gi|424856101|ref|ZP_18280364.1| RNA-binding protein, YhbY family [Enterococcus faecium R499]
gi|424901318|ref|ZP_18324837.1| RNA-binding protein, YhbY family [Enterococcus faecium R497]
gi|424949330|ref|ZP_18365014.1| RNA-binding protein, YhbY family [Enterococcus faecium R496]
gi|424953628|ref|ZP_18368579.1| RNA-binding protein, YhbY family [Enterococcus faecium R494]
gi|424957744|ref|ZP_18372452.1| RNA-binding protein, YhbY family [Enterococcus faecium R446]
gi|424962573|ref|ZP_18376902.1| RNA-binding protein, YhbY family [Enterococcus faecium P1986]
gi|424963304|ref|ZP_18377538.1| RNA-binding protein, YhbY family [Enterococcus faecium P1190]
gi|424967485|ref|ZP_18381181.1| RNA-binding protein, YhbY family [Enterococcus faecium P1140]
gi|424970374|ref|ZP_18383893.1| RNA-binding protein, YhbY family [Enterococcus faecium P1139]
gi|424974409|ref|ZP_18387641.1| RNA-binding protein, YhbY family [Enterococcus faecium P1137]
gi|424979476|ref|ZP_18392325.1| RNA-binding protein, YhbY family [Enterococcus faecium P1123]
gi|424982655|ref|ZP_18395296.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV99]
gi|424991593|ref|ZP_18403733.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV26]
gi|424993576|ref|ZP_18405562.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV168]
gi|424997647|ref|ZP_18409393.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV165]
gi|425002927|ref|ZP_18414328.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV161]
gi|425003343|ref|ZP_18414718.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV102]
gi|425007564|ref|ZP_18418687.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV1]
gi|425010808|ref|ZP_18421740.1| RNA-binding protein, YhbY family [Enterococcus faecium E422]
gi|425014429|ref|ZP_18425104.1| RNA-binding protein, YhbY family [Enterococcus faecium E417]
gi|425017429|ref|ZP_18427933.1| RNA-binding protein, YhbY family [Enterococcus faecium C621]
gi|425019731|ref|ZP_18430072.1| RNA-binding protein, YhbY family [Enterococcus faecium C497]
gi|425022789|ref|ZP_18432944.1| RNA-binding protein, YhbY family [Enterococcus faecium C1904]
gi|425033755|ref|ZP_18438702.1| RNA-binding protein, YhbY family [Enterococcus faecium 515]
gi|425034139|ref|ZP_18439050.1| RNA-binding protein, YhbY family [Enterococcus faecium 514]
gi|425040463|ref|ZP_18444931.1| RNA-binding protein, YhbY family [Enterococcus faecium 513]
gi|425043016|ref|ZP_18447288.1| RNA-binding protein, YhbY family [Enterococcus faecium 511]
gi|425044849|ref|ZP_18448977.1| RNA-binding protein, YhbY family [Enterococcus faecium 510]
gi|425050124|ref|ZP_18453892.1| RNA-binding protein, YhbY family [Enterococcus faecium 509]
gi|425052566|ref|ZP_18456166.1| RNA-binding protein, YhbY family [Enterococcus faecium 506]
gi|425059882|ref|ZP_18463198.1| RNA-binding protein, YhbY family [Enterococcus faecium 503]
gi|430824167|ref|ZP_19442734.1| RNA-binding protein YhbY [Enterococcus faecium E0120]
gi|430831716|ref|ZP_19449765.1| RNA-binding protein YhbY [Enterococcus faecium E0333]
gi|430848437|ref|ZP_19466254.1| RNA-binding protein YhbY [Enterococcus faecium E1133]
gi|430850942|ref|ZP_19468698.1| RNA-binding protein YhbY [Enterococcus faecium E1185]
gi|430857115|ref|ZP_19474786.1| RNA-binding protein YhbY [Enterococcus faecium E1392]
gi|430867480|ref|ZP_19482474.1| RNA-binding protein YhbY [Enterococcus faecium E1574]
gi|431301202|ref|ZP_19507521.1| RNA-binding protein YhbY [Enterococcus faecium E1626]
gi|431538221|ref|ZP_19517571.1| RNA-binding protein YhbY [Enterococcus faecium E1731]
gi|431679746|ref|ZP_19524502.1| RNA-binding protein YhbY [Enterococcus faecium E1904]
gi|431743339|ref|ZP_19532219.1| RNA-binding protein YhbY [Enterococcus faecium E2071]
gi|431749191|ref|ZP_19537935.1| RNA-binding protein YhbY [Enterococcus faecium E2297]
gi|431754259|ref|ZP_19542923.1| RNA-binding protein YhbY [Enterococcus faecium E2883]
gi|431769160|ref|ZP_19557586.1| RNA-binding protein YhbY [Enterococcus faecium E1321]
gi|431770243|ref|ZP_19558646.1| RNA-binding protein YhbY [Enterococcus faecium E1644]
gi|431773800|ref|ZP_19562116.1| RNA-binding protein YhbY [Enterococcus faecium E2369]
gi|431777227|ref|ZP_19565482.1| RNA-binding protein YhbY [Enterococcus faecium E2560]
gi|431779480|ref|ZP_19567675.1| RNA-binding protein YhbY [Enterococcus faecium E4389]
gi|431783315|ref|ZP_19571433.1| RNA-binding protein YhbY [Enterococcus faecium E6012]
gi|431785165|ref|ZP_19573196.1| RNA-binding protein YhbY [Enterococcus faecium E6045]
gi|68195630|gb|EAN10070.1| Protein of unknown function UPF0044 [Enterococcus faecium DO]
gi|257814468|gb|EEV43226.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257818699|gb|EEV46027.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257827736|gb|EEV54362.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257830006|gb|EEV56613.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260073464|gb|EEW61792.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|260077018|gb|EEW64740.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289163030|gb|EFD10878.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|291592138|gb|EFF23758.1| hypothetical protein EfmE1636_1086 [Enterococcus faecium E1636]
gi|291594758|gb|EFF26140.1| conserved hypothetical protein [Enterococcus faecium E1679]
gi|291599039|gb|EFF30084.1| conserved hypothetical protein [Enterococcus faecium U0317]
gi|291604732|gb|EFF34216.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|313589089|gb|EFR67934.1| conserved hypothetical protein TIGR00253 [Enterococcus faecium
TX0133a01]
gi|313593759|gb|EFR72604.1| conserved hypothetical protein TIGR00253 [Enterococcus faecium
TX0133B]
gi|313596597|gb|EFR75442.1| conserved hypothetical protein TIGR00253 [Enterococcus faecium
TX0133A]
gi|313599162|gb|EFR78007.1| conserved hypothetical protein TIGR00253 [Enterococcus faecium
TX0133C]
gi|313641469|gb|EFS06049.1| conserved hypothetical protein TIGR00253 [Enterococcus faecium
TX0133a04]
gi|313645183|gb|EFS09763.1| conserved hypothetical protein TIGR00253 [Enterococcus faecium
TX0082]
gi|364091098|gb|EHM33602.1| conserved hypothetical protein [Enterococcus faecium E4452]
gi|364091182|gb|EHM33680.1| conserved hypothetical protein [Enterococcus faecium E4453]
gi|378938324|gb|AFC63396.1| RNA-binding protein YhbY [Enterococcus faecium Aus0004]
gi|388533413|gb|AFK58605.1| RNA-binding protein [Enterococcus faecium DO]
gi|402916878|gb|EJX37710.1| RNA-binding protein, YhbY family [Enterococcus faecium V689]
gi|402919188|gb|EJX39813.1| RNA-binding protein, YhbY family [Enterococcus faecium S447]
gi|402930527|gb|EJX50174.1| RNA-binding protein, YhbY family [Enterococcus faecium R499]
gi|402930712|gb|EJX50342.1| RNA-binding protein, YhbY family [Enterococcus faecium R497]
gi|402934664|gb|EJX53985.1| RNA-binding protein, YhbY family [Enterococcus faecium R496]
gi|402938627|gb|EJX57615.1| RNA-binding protein, YhbY family [Enterococcus faecium R494]
gi|402940057|gb|EJX58915.1| RNA-binding protein, YhbY family [Enterococcus faecium P1986]
gi|402942812|gb|EJX61368.1| RNA-binding protein, YhbY family [Enterococcus faecium R446]
gi|402949759|gb|EJX67798.1| RNA-binding protein, YhbY family [Enterococcus faecium P1190]
gi|402954339|gb|EJX71972.1| RNA-binding protein, YhbY family [Enterococcus faecium P1140]
gi|402956414|gb|EJX73876.1| RNA-binding protein, YhbY family [Enterococcus faecium P1137]
gi|402957906|gb|EJX75264.1| RNA-binding protein, YhbY family [Enterococcus faecium P1123]
gi|402960309|gb|EJX77465.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV99]
gi|402962022|gb|EJX79004.1| RNA-binding protein, YhbY family [Enterococcus faecium P1139]
gi|402976380|gb|EJX92276.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV26]
gi|402981962|gb|EJX97463.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV161]
gi|402982223|gb|EJX97702.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV168]
gi|402985707|gb|EJY00894.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV165]
gi|402992291|gb|EJY07008.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV102]
gi|402994713|gb|EJY09226.1| RNA-binding protein, YhbY family [Enterococcus faecium ERV1]
gi|402998679|gb|EJY12923.1| RNA-binding protein, YhbY family [Enterococcus faecium E417]
gi|402998744|gb|EJY12987.1| RNA-binding protein, YhbY family [Enterococcus faecium E422]
gi|403004335|gb|EJY18150.1| RNA-binding protein, YhbY family [Enterococcus faecium C621]
gi|403008624|gb|EJY22119.1| RNA-binding protein, YhbY family [Enterococcus faecium 515]
gi|403010908|gb|EJY24249.1| RNA-binding protein, YhbY family [Enterococcus faecium C497]
gi|403011879|gb|EJY25158.1| RNA-binding protein, YhbY family [Enterococcus faecium C1904]
gi|403012770|gb|EJY25950.1| RNA-binding protein, YhbY family [Enterococcus faecium 513]
gi|403021278|gb|EJY33746.1| RNA-binding protein, YhbY family [Enterococcus faecium 514]
gi|403021499|gb|EJY33955.1| RNA-binding protein, YhbY family [Enterococcus faecium 511]
gi|403024623|gb|EJY36768.1| RNA-binding protein, YhbY family [Enterococcus faecium 509]
gi|403028499|gb|EJY40319.1| RNA-binding protein, YhbY family [Enterococcus faecium 510]
gi|403033852|gb|EJY45336.1| RNA-binding protein, YhbY family [Enterococcus faecium 506]
gi|403043187|gb|EJY54111.1| RNA-binding protein, YhbY family [Enterococcus faecium 503]
gi|430441551|gb|ELA51648.1| RNA-binding protein YhbY [Enterococcus faecium E0120]
gi|430481097|gb|ELA58262.1| RNA-binding protein YhbY [Enterococcus faecium E0333]
gi|430534699|gb|ELA75134.1| RNA-binding protein YhbY [Enterococcus faecium E1185]
gi|430534880|gb|ELA75312.1| RNA-binding protein YhbY [Enterococcus faecium E1133]
gi|430542840|gb|ELA82933.1| RNA-binding protein YhbY [Enterococcus faecium E1392]
gi|430550491|gb|ELA90287.1| RNA-binding protein YhbY [Enterococcus faecium E1574]
gi|430580392|gb|ELB18859.1| RNA-binding protein YhbY [Enterococcus faecium E1626]
gi|430594763|gb|ELB32726.1| RNA-binding protein YhbY [Enterococcus faecium E1731]
gi|430598811|gb|ELB36539.1| RNA-binding protein YhbY [Enterococcus faecium E1904]
gi|430607173|gb|ELB44501.1| RNA-binding protein YhbY [Enterococcus faecium E2071]
gi|430611953|gb|ELB49020.1| RNA-binding protein YhbY [Enterococcus faecium E2297]
gi|430619866|gb|ELB56678.1| RNA-binding protein YhbY [Enterococcus faecium E2883]
gi|430627935|gb|ELB64399.1| RNA-binding protein YhbY [Enterococcus faecium E1321]
gi|430635134|gb|ELB71232.1| RNA-binding protein YhbY [Enterococcus faecium E2369]
gi|430635996|gb|ELB72075.1| RNA-binding protein YhbY [Enterococcus faecium E1644]
gi|430639711|gb|ELB75577.1| RNA-binding protein YhbY [Enterococcus faecium E2560]
gi|430642335|gb|ELB78116.1| RNA-binding protein YhbY [Enterococcus faecium E4389]
gi|430645516|gb|ELB81030.1| RNA-binding protein YhbY [Enterococcus faecium E6012]
gi|430648062|gb|ELB83487.1| RNA-binding protein YhbY [Enterococcus faecium E6045]
Length = 103
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L S AH L + +GK G+ ++ E LE EL+K+ + + E+
Sbjct: 6 KQKRFLRSKAHHLQPIFQ---IGKGGINSAMIVQIEEALEKRELIKVSLLQNTDEIAEEA 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ LE+ +V IG+ +++Y+PS
Sbjct: 63 AQVLEKEIDCEIVQIIGRVIVLYKPS 88
>gi|227550576|ref|ZP_03980625.1| RNA-binding protein [Enterococcus faecium TX1330]
gi|257888601|ref|ZP_05668254.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257897021|ref|ZP_05676674.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|293378714|ref|ZP_06624872.1| RNA-binding protein, YhbY family [Enterococcus faecium PC4.1]
gi|424763233|ref|ZP_18190712.1| RNA-binding protein, YhbY family [Enterococcus faecium TX1337RF]
gi|431030887|ref|ZP_19490596.1| RNA-binding protein YhbY [Enterococcus faecium E1590]
gi|431763995|ref|ZP_19552542.1| RNA-binding protein YhbY [Enterococcus faecium E3548]
gi|227180284|gb|EEI61256.1| RNA-binding protein [Enterococcus faecium TX1330]
gi|257824655|gb|EEV51587.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257833586|gb|EEV60007.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|292642642|gb|EFF60794.1| RNA-binding protein, YhbY family [Enterococcus faecium PC4.1]
gi|402423044|gb|EJV55264.1| RNA-binding protein, YhbY family [Enterococcus faecium TX1337RF]
gi|430565062|gb|ELB04232.1| RNA-binding protein YhbY [Enterococcus faecium E1590]
gi|430621451|gb|ELB58213.1| RNA-binding protein YhbY [Enterococcus faecium E3548]
Length = 103
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L S AH L + +GK G+ ++ E LE EL+K+ + + E+
Sbjct: 6 KQKRFLRSKAHHLQPIFQ---IGKGGINSAMIVQIEEALEKRELIKVSLLQNTDEVAEEA 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ LE+ +V IG+ +++Y+PS
Sbjct: 63 AQVLEKEIDCEIVQIIGRVIVLYKPS 88
>gi|253991510|ref|YP_003042866.1| conserved hypothetical protein [Photorhabdus asymbiotica]
gi|211638388|emb|CAR67010.1| similar to unknown protein yhby of escherichia coli [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253782960|emb|CAQ86125.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 97
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 11/93 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K+ + L S AH L ++G +G+T+GV+ +TL +EL+K+KI GE
Sbjct: 3 LNKKQVQHLKSLAHPLKP---VVMIGNNGLTEGVLAEIEQTLAHHELIKVKI----AGED 55
Query: 89 EDVVKQLEEA----TGSAVVSQIGQTVIIYRPS 117
++ + +A TG+ V IG+T+++YR S
Sbjct: 56 REIKNLIADAIVRETGAYNVQIIGKTLVLYRQS 88
>gi|347525534|ref|YP_004832282.1| YhbY domain RNA binding protein [Lactobacillus ruminis ATCC 27782]
gi|345284493|gb|AEN78346.1| YhbY domain RNA binding protein [Lactobacillus ruminis ATCC 27782]
Length = 103
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL K+K+ L S AH + + VGK G+T + + +E ELLKI + + E
Sbjct: 2 KLKGKQKRYLRSQAHGMRPLFQ---VGKEGLTANWLKQVEDAIEKRELLKINVLQNAIVE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
E+V++ +E+ + VV +IG +++++ + R
Sbjct: 59 DEEVIEYIEDNSQIQVVQKIGHVLVLFKQADKR 91
>gi|433675988|ref|ZP_20508153.1| CRS2-associated factor 1, chloroplastic [Xanthomonas translucens
pv. translucens DSM 18974]
gi|430818895|emb|CCP38411.1| CRS2-associated factor 1, chloroplastic [Xanthomonas translucens
pv. translucens DSM 18974]
Length = 101
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L AH L L+ +G GVT + E LE +EL+K+K+
Sbjct: 5 LTPSQNRFLRGLAHDLKPLLQ---IGGKGVTPAFLAELDEVLERHELVKVKVGGDDREAR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + L E + S +V +IG T ++YRP+
Sbjct: 62 DASIASLVEQSHSVLVQRIGHTAVLYRPA 90
>gi|317046733|ref|YP_004114381.1| hypothetical protein Pat9b_0500 [Pantoea sp. At-9b]
gi|316948350|gb|ADU67825.1| protein of unknown function UPF0044 [Pantoea sp. At-9b]
Length = 111
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 15 NLSTKQKQHLKGLAHPLKPVV---MLGGNGLTEGVLAEIEQALEHHELIKVKIAS----- 66
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V + T + V IG+T+++YRP+
Sbjct: 67 -EDRETKLLIVDAIIRETKACNVQVIGKTLVLYRPA 101
>gi|262371956|ref|ZP_06065235.1| CRS1/YhbY domain-containing protein [Acinetobacter junii SH205]
gi|262311981|gb|EEY93066.1| CRS1/YhbY domain-containing protein [Acinetobacter junii SH205]
Length = 107
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L++ E+K L H+L + ++G G+T+ V+ L +EL+K+KI
Sbjct: 1 MAALSIHERKRLRQIGHALNPVV---MIGGQGLTENVIEETNRALNDHELIKVKIAGEDR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ V+ + EATG+ V +IG+ V++Y+ +
Sbjct: 58 EDRAAVIDAIVEATGAESVQKIGKIVLLYKKA 89
>gi|399046903|ref|ZP_10739091.1| putative RNA-binding protein, YhbY family [Brevibacillus sp. CF112]
gi|433545541|ref|ZP_20501894.1| hypothetical protein D478_17699 [Brevibacillus agri BAB-2500]
gi|398055053|gb|EJL47145.1| putative RNA-binding protein, YhbY family [Brevibacillus sp. CF112]
gi|432183196|gb|ELK40744.1| hypothetical protein D478_17699 [Brevibacillus agri BAB-2500]
Length = 96
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + VGK GV + ++T E LE EL+K+ I + +
Sbjct: 2 LTGKQKRFLRAEAHHLTPIFQ---VGKGGVNENMITQIKEALEVRELIKVAILQNNSDDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V ++L G+ +V IG TV++Y+ S
Sbjct: 59 HEVAEELAAGAGAELVQLIGHTVVLYKES 87
>gi|375105771|ref|ZP_09752032.1| putative RNA-binding protein, YhbY family [Burkholderiales
bacterium JOSHI_001]
gi|374666502|gb|EHR71287.1| putative RNA-binding protein, YhbY family [Burkholderiales
bacterium JOSHI_001]
Length = 159
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT ++K+ AH L + ++G G+T GV+ L+A+ L+K+++ +
Sbjct: 6 LTPAQRKQHRGDAHHLDPVV---MIGADGLTAGVLKEVEGALKAHGLIKVRVFSDVRADR 62
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQAR 131
E ++ L E +A V IG+ ++++RP + K E + + R
Sbjct: 63 EALLASLAEQCSAAPVQHIGKLLVLWRPLADKEKAEADEDRMR 105
>gi|83814609|ref|YP_445464.1| CRS1/YhbY domain-containing superfamily [Salinibacter ruber DSM
13855]
gi|83756003|gb|ABC44116.1| CRS1 / YhbY domain superfamily [Salinibacter ruber DSM 13855]
Length = 107
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+LT +++ L S AH + +GK GVTD V+ + E EL+ I++ P
Sbjct: 4 RLTSRQRAHLRSEAHGQDPLVH---IGKEGVTDPVMQAVEEAFNTRELVTIRVLDNAPRP 60
Query: 88 LEDVVKQLEEATGSA-VVSQIGQTVIIYRP 116
+ +V + + +A VV IG T + YRP
Sbjct: 61 VREVAEAVADALEDVQVVRTIGGTALFYRP 90
>gi|416998874|ref|ZP_11939543.1| RNA-binding protein, YhbY family [Veillonella parvula
ACS-068-V-Sch12]
gi|333977027|gb|EGL77886.1| RNA-binding protein, YhbY family [Veillonella parvula
ACS-068-V-Sch12]
Length = 94
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K+K+ L S A ++ ++ +GK+G+ D V+ S + A EL+K+K+H P E
Sbjct: 1 MTGKQKRYLRSLAATISPVVQ---IGKNGLEDSVIDSARAAITARELIKVKLHNNSP-ED 56
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + + L + G+ +V IG ++Y+
Sbjct: 57 KTIFQDLADMLGAELVQVIGFNGVLYK 83
>gi|119471557|ref|ZP_01613971.1| RNA binding protein; ancient RNA-binding IF3-C fold
[Alteromonadales bacterium TW-7]
gi|392538805|ref|ZP_10285942.1| RNA binding protein [Pseudoalteromonas marina mano4]
gi|119445500|gb|EAW26786.1| RNA binding protein; ancient RNA-binding IF3-C fold
[Alteromonadales bacterium TW-7]
Length = 98
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI----HRTC 84
L+ K+K+ L AHSL L+G +G+T+GVV LE +EL+K+K+ T
Sbjct: 3 LSNKQKQFLKGEAHSLKP---VVLLGSNGLTEGVVMEIQSALEIHELIKVKVPTDDRETK 59
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E +V++ TG+ + IG T+++YR S
Sbjct: 60 ALIFEAIVRE----TGATKLQTIGHTIVLYRQS 88
>gi|154986383|gb|ABS89145.1| CFM2 [Zea mays]
Length = 942
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 19 PSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKI 78
PS + L LP+ E + L + K+LK VGK+G+T+G+V E E++K+
Sbjct: 39 PSAAELALPR---DELRRLQGIGIRVRKRLK---VGKAGITEGIVNGIHERWRNAEVVKL 92
Query: 79 KIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + + LE TG V+ + G T+I+YR
Sbjct: 93 RCEDVWAMNMRRTHEILERKTGGLVIWRSGSTIILYR 129
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 19 PSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKI 78
PS P PKLT +E L AH+L +G+S G+ S I+ E E+ KI
Sbjct: 329 PSGVP---PKLTDREMTILRRLAHALPFHYA---LGRSSNLQGLAASMIKLWERCEVAKI 382
Query: 79 KIHRTCPG-ELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ R + E + ++++E TG ++S+ ++++ YR
Sbjct: 383 ALKRDAHNTDSELITEEVKELTGGTLLSRDKESIVFYR 420
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 15 EVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANE 74
+ +S S SPL L+ +E+ L A + KK +G++ GV + + +
Sbjct: 798 DAESLSVSPLRAAPLSNQERLVLRKQALQM-KKRPVLSIGRNNAITGVAKTIKTHFKKHP 856
Query: 75 LLKIKIHRTCPGE-LEDVVKQLEEATGSAVVSQIGQTVIIYR 115
L + I G ++ ++ +LEEATGS +VS+ VI+YR
Sbjct: 857 LAIVNIKNRADGTPIQQLISELEEATGSVLVSRETNKVILYR 898
>gi|421766270|ref|ZP_16203045.1| RNA binding protein [Lactococcus garvieae DCC43]
gi|407625277|gb|EKF51988.1| RNA binding protein [Lactococcus garvieae DCC43]
Length = 102
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S A ++ ++ +GKSG+T+ ++TS +A EL+K+ I +
Sbjct: 3 LTGKQKRYLRSLAVNIRPIVQ---IGKSGLTNEILTSIRHAADARELIKVNILQNSDETA 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+DV ++E G VV IG+ V++++ S
Sbjct: 60 KDVASMIDE-MGLTVVQIIGRNVVVFKVS 87
>gi|359444720|ref|ZP_09234490.1| RNA-binding protein [Pseudoalteromonas sp. BSi20439]
gi|358041439|dbj|GAA70739.1| RNA-binding protein [Pseudoalteromonas sp. BSi20439]
Length = 98
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AHSL + L+G +G+T+GVV LE +EL+K+K+ G+
Sbjct: 3 LSNKQKQFLKGQAHSLKPVV---LLGSNGLTEGVVVEIQSALEIHELIKVKV---PTGDR 56
Query: 89 ED---VVKQLEEATGSAVVSQIGQTVIIYRPS 117
E + + TG+ + IG T+++YR S
Sbjct: 57 ETKKLIFDAIVRETGATKLQTIGHTIVLYRQS 88
>gi|319942669|ref|ZP_08016976.1| CRS1 protein [Sutterella wadsworthensis 3_1_45B]
gi|319803752|gb|EFW00687.1| CRS1 protein [Sutterella wadsworthensis 3_1_45B]
Length = 157
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 37 LASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLE 96
L + AH L + L+G SG+T+ V+ L+A+EL+K+++ E E + ++
Sbjct: 14 LRAQAHHLNPVV---LLGASGLTEAVMKEIDRELKAHELIKVRVPTDDREEREAIFVKIA 70
Query: 97 EATGSAVVSQIGQTVIIYRPS 117
+ G A V IG+ ++++RP+
Sbjct: 71 DELGCARVQMIGKLLVLWRPA 91
>gi|241758709|ref|ZP_04756822.1| conserved hypothetical protein [Neisseria flavescens SK114]
gi|241320917|gb|EER57130.1| conserved hypothetical protein [Neisseria flavescens SK114]
Length = 95
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ KE L + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLSTKEILALKAQAHHLHPVV---MVGQQGLTDSVIKETNAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ L E G+ +V IG+ ++++R
Sbjct: 62 RIEICNALCETLGAQLVQHIGKLLVLWR 89
>gi|134302461|ref|YP_001122431.1| RNA-binding protein [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421752331|ref|ZP_16189360.1| RNA-binding protein [Francisella tularensis subsp. tularensis
AS_713]
gi|421754197|ref|ZP_16191176.1| RNA-binding protein [Francisella tularensis subsp. tularensis 831]
gi|421757922|ref|ZP_16194788.1| RNA-binding protein [Francisella tularensis subsp. tularensis
80700103]
gi|421759759|ref|ZP_16196586.1| RNA-binding protein [Francisella tularensis subsp. tularensis
70102010]
gi|424675079|ref|ZP_18111991.1| RNA-binding protein [Francisella tularensis subsp. tularensis
70001275]
gi|134050238|gb|ABO47309.1| putative RNA-binding protein with CRS1 / YhbY domain [Francisella
tularensis subsp. tularensis WY96-3418]
gi|409085222|gb|EKM85371.1| RNA-binding protein [Francisella tularensis subsp. tularensis 831]
gi|409085496|gb|EKM85637.1| RNA-binding protein [Francisella tularensis subsp. tularensis
AS_713]
gi|409090138|gb|EKM90161.1| RNA-binding protein [Francisella tularensis subsp. tularensis
70102010]
gi|409091458|gb|EKM91456.1| RNA-binding protein [Francisella tularensis subsp. tularensis
80700103]
gi|417434334|gb|EKT89293.1| RNA-binding protein [Francisella tularensis subsp. tularensis
70001275]
Length = 92
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+ VK++++L + AHSL L+G+ G+T+ V+ L +++L+K+K+ R E
Sbjct: 1 MDVKQQQKLKAQAHSLKP---VVLMGEKGLTENVILEIDLALASHQLIKVKVGRLPKEEK 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + ++ +AT +V IG +++YR
Sbjct: 58 QQIASEITQATRLELVQIIGNILVLYR 84
>gi|73541860|ref|YP_296380.1| hypothetical protein Reut_A2172 [Ralstonia eutropha JMP134]
gi|72119273|gb|AAZ61536.1| Protein of unknown function UPF0044 [Ralstonia eutropha JMP134]
Length = 166
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+L ++ EL S AH L + ++G G+T V+ +L A++L+KI++ G+
Sbjct: 5 QLIPAQRSELRSRAHGLNPVV---MIGAEGLTRAVLAEIDRSLAAHDLIKIRVF----GD 57
Query: 88 LEDVVKQLEEAT----GSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKESKLKP 143
+ + EA +A + IG+ ++++RP R+K + + R R+ + +
Sbjct: 58 DREARIAIYEAICDELDAAPIQHIGKLLVVWRPGEARLKENQPQDLGRHTPARRGAAPRT 117
Query: 144 LLLKK 148
+ +KK
Sbjct: 118 VTVKK 122
>gi|398792272|ref|ZP_10552934.1| putative RNA-binding protein, YhbY family [Pantoea sp. YR343]
gi|398798022|ref|ZP_10557324.1| putative RNA-binding protein, YhbY family [Pantoea sp. GM01]
gi|398101270|gb|EJL91493.1| putative RNA-binding protein, YhbY family [Pantoea sp. GM01]
gi|398213586|gb|EJN00179.1| putative RNA-binding protein, YhbY family [Pantoea sp. YR343]
Length = 97
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L ++G +G+T+GV+ LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKP---VVMLGGNGLTEGVLAEIELALEHHELIKVKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ +V + T + V IG T+++YRP+
Sbjct: 59 KQLIVDAIVRETKAGNVQVIGNTLVLYRPA 88
>gi|421537754|ref|ZP_15983937.1| RNA-binding protein YhbY [Neisseria meningitidis 93003]
gi|421539979|ref|ZP_15986132.1| RNA-binding protein YhbY [Neisseria meningitidis 93004]
gi|402318421|gb|EJU53944.1| RNA-binding protein YhbY [Neisseria meningitidis 93003]
gi|402320263|gb|EJU55754.1| RNA-binding protein YhbY [Neisseria meningitidis 93004]
Length = 94
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLNTKEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + V IG+ ++++R ++
Sbjct: 62 RIEICTALCEAVDAQPVQHIGKLLVLWRKNI 92
>gi|260913961|ref|ZP_05920435.1| RNA-binding protein YhbY [Pasteurella dagmatis ATCC 43325]
gi|260632048|gb|EEX50225.1| RNA-binding protein YhbY [Pasteurella dagmatis ATCC 43325]
Length = 100
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L + ++G +G+T+GV+ LE +EL+K+KI
Sbjct: 5 LSTKQKQFLKGIAHHLNPVV---MIGNNGLTEGVLAEIDNALEHHELIKVKIAGADREVK 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T S V IG +++YR S
Sbjct: 62 QLIIDAIVRETKSTAVQTIGHVLVLYRAS 90
>gi|261365004|ref|ZP_05977887.1| CRS1 / YhbY domain protein [Neisseria mucosa ATCC 25996]
gi|288566589|gb|EFC88149.1| CRS1 / YhbY domain protein [Neisseria mucosa ATCC 25996]
Length = 94
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ KE EL + AH L + +VG+ G+T+ V+ L A+EL+K+++ E
Sbjct: 5 KLSTKEILELKARAHHLHPVV---MVGQQGLTESVIKETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L +A + +V IG+ ++++R +L
Sbjct: 62 RVEICNALCDAVDAQLVQHIGKLLVLWRKNL 92
>gi|187924840|ref|YP_001896482.1| hypothetical protein Bphyt_2864 [Burkholderia phytofirmans PsJN]
gi|187716034|gb|ACD17258.1| protein of unknown function UPF0044 [Burkholderia phytofirmans
PsJN]
Length = 175
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P K++ ++ EL S AH+L + LVG G+TD V++ L A++L+KI++
Sbjct: 1 MPALKVSSDQRAELRSQAHALKPVV---LVGAEGLTDAVLSEIKVHLGAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKK 127
E + +++ + +A + IG+ ++I++P + ++ K+
Sbjct: 58 EREERIAIYEEICDKLNAAPIQHIGKLLVIWKPEAAQPAVKTKR 101
>gi|154986387|gb|ABS89147.1| CFM2 alternative polyadenylation form 2 [Zea mays]
Length = 783
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 19 PSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKI 78
PS + L LP+ E + L + K+LK VGK+G+T+G+V E E++K+
Sbjct: 129 PSAAELALPR---DELRRLQGIGIRVRKRLK---VGKAGITEGIVNGIHERWRNAEVVKL 182
Query: 79 KIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + + LE TG V+ + G T+I+YR
Sbjct: 183 RCEDVWAMNMRRTHEILERKTGGLVIWRSGSTIILYR 219
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 27 PKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPG 86
PKLT +E L AH+L +G+S G+ S I+ E E+ KI + R
Sbjct: 424 PKLTDREMTILRRLAHALPFHYA---LGRSSNLQGLAASMIKLWERCEVAKIALKRDAHN 480
Query: 87 -ELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ E + ++++E TG ++S+ ++++ YR
Sbjct: 481 TDSELITEEVKELTGGTLLSRDKESIVFYR 510
>gi|161869744|ref|YP_001598911.1| RNA-binding protein [Neisseria meningitidis 053442]
gi|218767918|ref|YP_002342430.1| hypothetical protein NMA1009 [Neisseria meningitidis Z2491]
gi|385324446|ref|YP_005878885.1| hypothetical protein NMV_1596 [Neisseria meningitidis 8013]
gi|385851536|ref|YP_005898051.1| CRS1 / YhbY domain protein [Neisseria meningitidis M04-240196]
gi|385853512|ref|YP_005900026.1| CRS1 / YhbY domain protein [Neisseria meningitidis H44/76]
gi|385856954|ref|YP_005903466.1| CRS1 / YhbY domain protein [Neisseria meningitidis NZ-05/33]
gi|416162841|ref|ZP_11606850.1| CRS1 / YhbY domain protein [Neisseria meningitidis N1568]
gi|416178624|ref|ZP_11610652.1| CRS1 / YhbY domain protein [Neisseria meningitidis M6190]
gi|416192631|ref|ZP_11616737.1| CRS1 / YhbY domain protein [Neisseria meningitidis ES14902]
gi|416205545|ref|ZP_11620593.1| CRS1 / YhbY domain protein [Neisseria meningitidis 961-5945]
gi|418288027|ref|ZP_12900550.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM233]
gi|418290284|ref|ZP_12902451.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM220]
gi|421542208|ref|ZP_15988318.1| RNA-binding protein YhbY [Neisseria meningitidis NM255]
gi|421544175|ref|ZP_15990253.1| RNA-binding protein YhbY [Neisseria meningitidis NM140]
gi|421546285|ref|ZP_15992334.1| RNA-binding protein YhbY [Neisseria meningitidis NM183]
gi|421548554|ref|ZP_15994579.1| RNA-binding protein YhbY [Neisseria meningitidis NM2781]
gi|421550354|ref|ZP_15996359.1| RNA-binding protein YhbY [Neisseria meningitidis 69166]
gi|421552579|ref|ZP_15998553.1| RNA-binding protein YhbY [Neisseria meningitidis NM576]
gi|421557024|ref|ZP_16002933.1| RNA-binding protein YhbY [Neisseria meningitidis 80179]
gi|421558664|ref|ZP_16004542.1| RNA-binding protein YhbY [Neisseria meningitidis 92045]
gi|421560977|ref|ZP_16006830.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM2657]
gi|421565118|ref|ZP_16010904.1| RNA-binding protein YhbY [Neisseria meningitidis NM3081]
gi|421567247|ref|ZP_16012983.1| RNA-binding protein YhbY [Neisseria meningitidis NM3001]
gi|433466950|ref|ZP_20424407.1| CRS1 / YhbY domain protein [Neisseria meningitidis 87255]
gi|433468957|ref|ZP_20426386.1| CRS1 / YhbY domain protein [Neisseria meningitidis 98080]
gi|433471009|ref|ZP_20428400.1| CRS1 / YhbY domain protein [Neisseria meningitidis 68094]
gi|433473204|ref|ZP_20430568.1| CRS1 / YhbY domain protein [Neisseria meningitidis 97021]
gi|433475410|ref|ZP_20432751.1| CRS1 / YhbY domain protein [Neisseria meningitidis 88050]
gi|433477289|ref|ZP_20434612.1| CRS1 / YhbY domain protein [Neisseria meningitidis 70012]
gi|433479358|ref|ZP_20436652.1| CRS1 / YhbY domain protein [Neisseria meningitidis 63041]
gi|433481753|ref|ZP_20439018.1| CRS1 / YhbY domain protein [Neisseria meningitidis 2006087]
gi|433483739|ref|ZP_20440967.1| CRS1 / YhbY domain protein [Neisseria meningitidis 2002038]
gi|433485938|ref|ZP_20443139.1| CRS1 / YhbY domain protein [Neisseria meningitidis 97014]
gi|433492303|ref|ZP_20449397.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM586]
gi|433494380|ref|ZP_20451450.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM762]
gi|433496564|ref|ZP_20453605.1| CRS1 / YhbY domain protein [Neisseria meningitidis M7089]
gi|433498624|ref|ZP_20455633.1| CRS1 / YhbY domain protein [Neisseria meningitidis M7124]
gi|433500592|ref|ZP_20457578.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM174]
gi|433502797|ref|ZP_20459762.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM126]
gi|433513159|ref|ZP_20469953.1| CRS1 / YhbY domain protein [Neisseria meningitidis 63049]
gi|433515254|ref|ZP_20472026.1| CRS1 / YhbY domain protein [Neisseria meningitidis 2004090]
gi|433517306|ref|ZP_20474055.1| CRS1 / YhbY domain protein [Neisseria meningitidis 96023]
gi|433519526|ref|ZP_20476247.1| CRS1 / YhbY domain protein [Neisseria meningitidis 65014]
gi|433521628|ref|ZP_20478323.1| CRS1 / YhbY domain protein [Neisseria meningitidis 61103]
gi|433523629|ref|ZP_20480294.1| CRS1 / YhbY domain protein [Neisseria meningitidis 97020]
gi|433525678|ref|ZP_20482312.1| CRS1 / YhbY domain protein [Neisseria meningitidis 69096]
gi|433527915|ref|ZP_20484526.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM3652]
gi|433530089|ref|ZP_20486682.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM3642]
gi|433532347|ref|ZP_20488913.1| CRS1 / YhbY domain protein [Neisseria meningitidis 2007056]
gi|433534181|ref|ZP_20490726.1| CRS1 / YhbY domain protein [Neisseria meningitidis 2001212]
gi|433536488|ref|ZP_20492996.1| CRS1 / YhbY domain protein [Neisseria meningitidis 77221]
gi|433538681|ref|ZP_20495161.1| CRS1 / YhbY domain protein [Neisseria meningitidis 70030]
gi|433540659|ref|ZP_20497114.1| CRS1 / YhbY domain protein [Neisseria meningitidis 63006]
gi|121051926|emb|CAM08232.1| hypothetical protein NMA1009 [Neisseria meningitidis Z2491]
gi|161595297|gb|ABX72957.1| putative RNA-binding protein containing KH domain [Neisseria
meningitidis 053442]
gi|261392833|emb|CAX50414.1| conserved hypothetical protein [Neisseria meningitidis 8013]
gi|325127923|gb|EGC50826.1| CRS1 / YhbY domain protein [Neisseria meningitidis N1568]
gi|325131967|gb|EGC54666.1| CRS1 / YhbY domain protein [Neisseria meningitidis M6190]
gi|325137798|gb|EGC60373.1| CRS1 / YhbY domain protein [Neisseria meningitidis ES14902]
gi|325142053|gb|EGC64482.1| CRS1 / YhbY domain protein [Neisseria meningitidis 961-5945]
gi|325200516|gb|ADY95971.1| CRS1 / YhbY domain protein [Neisseria meningitidis H44/76]
gi|325206359|gb|ADZ01812.1| CRS1 / YhbY domain protein [Neisseria meningitidis M04-240196]
gi|325207843|gb|ADZ03295.1| CRS1 / YhbY domain protein [Neisseria meningitidis NZ-05/33]
gi|372201874|gb|EHP15749.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM220]
gi|372202732|gb|EHP16506.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM233]
gi|402318144|gb|EJU53669.1| RNA-binding protein YhbY [Neisseria meningitidis NM255]
gi|402324020|gb|EJU59458.1| RNA-binding protein YhbY [Neisseria meningitidis NM183]
gi|402324287|gb|EJU59723.1| RNA-binding protein YhbY [Neisseria meningitidis NM140]
gi|402326215|gb|EJU61620.1| RNA-binding protein YhbY [Neisseria meningitidis NM2781]
gi|402330569|gb|EJU65916.1| RNA-binding protein YhbY [Neisseria meningitidis 69166]
gi|402331211|gb|EJU66552.1| RNA-binding protein YhbY [Neisseria meningitidis NM576]
gi|402335709|gb|EJU70973.1| RNA-binding protein YhbY [Neisseria meningitidis 80179]
gi|402337407|gb|EJU72655.1| RNA-binding protein YhbY [Neisseria meningitidis 92045]
gi|402339457|gb|EJU74673.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM2657]
gi|402344258|gb|EJU79399.1| RNA-binding protein YhbY [Neisseria meningitidis NM3001]
gi|402345447|gb|EJU80564.1| RNA-binding protein YhbY [Neisseria meningitidis NM3081]
gi|432203526|gb|ELK59577.1| CRS1 / YhbY domain protein [Neisseria meningitidis 87255]
gi|432205350|gb|ELK61380.1| CRS1 / YhbY domain protein [Neisseria meningitidis 98080]
gi|432209498|gb|ELK65465.1| CRS1 / YhbY domain protein [Neisseria meningitidis 68094]
gi|432210805|gb|ELK66761.1| CRS1 / YhbY domain protein [Neisseria meningitidis 97021]
gi|432211228|gb|ELK67183.1| CRS1 / YhbY domain protein [Neisseria meningitidis 88050]
gi|432216511|gb|ELK72392.1| CRS1 / YhbY domain protein [Neisseria meningitidis 70012]
gi|432217161|gb|ELK73030.1| CRS1 / YhbY domain protein [Neisseria meningitidis 63041]
gi|432217584|gb|ELK73452.1| CRS1 / YhbY domain protein [Neisseria meningitidis 2006087]
gi|432221442|gb|ELK77252.1| CRS1 / YhbY domain protein [Neisseria meningitidis 2002038]
gi|432222984|gb|ELK78766.1| CRS1 / YhbY domain protein [Neisseria meningitidis 97014]
gi|432229092|gb|ELK84785.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM586]
gi|432231054|gb|ELK86724.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM762]
gi|432234458|gb|ELK90078.1| CRS1 / YhbY domain protein [Neisseria meningitidis M7124]
gi|432235264|gb|ELK90880.1| CRS1 / YhbY domain protein [Neisseria meningitidis M7089]
gi|432235883|gb|ELK91492.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM174]
gi|432240893|gb|ELK96424.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM126]
gi|432248836|gb|ELL04260.1| CRS1 / YhbY domain protein [Neisseria meningitidis 63049]
gi|432253842|gb|ELL09178.1| CRS1 / YhbY domain protein [Neisseria meningitidis 2004090]
gi|432254315|gb|ELL09650.1| CRS1 / YhbY domain protein [Neisseria meningitidis 96023]
gi|432255517|gb|ELL10846.1| CRS1 / YhbY domain protein [Neisseria meningitidis 65014]
gi|432260401|gb|ELL15660.1| CRS1 / YhbY domain protein [Neisseria meningitidis 61103]
gi|432260528|gb|ELL15786.1| CRS1 / YhbY domain protein [Neisseria meningitidis 97020]
gi|432261869|gb|ELL17114.1| CRS1 / YhbY domain protein [Neisseria meningitidis 69096]
gi|432266222|gb|ELL21410.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM3652]
gi|432268017|gb|ELL23189.1| CRS1 / YhbY domain protein [Neisseria meningitidis NM3642]
gi|432268292|gb|ELL23463.1| CRS1 / YhbY domain protein [Neisseria meningitidis 2007056]
gi|432272691|gb|ELL27798.1| CRS1 / YhbY domain protein [Neisseria meningitidis 2001212]
gi|432274438|gb|ELL29526.1| CRS1 / YhbY domain protein [Neisseria meningitidis 77221]
gi|432274689|gb|ELL29776.1| CRS1 / YhbY domain protein [Neisseria meningitidis 70030]
gi|432277674|gb|ELL32720.1| CRS1 / YhbY domain protein [Neisseria meningitidis 63006]
Length = 94
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLNTKEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + V IG+ ++++R ++
Sbjct: 62 RIEICTALCEAVDAQPVQHIGKLLVLWRKNI 92
>gi|293556694|ref|ZP_06675258.1| conserved hypothetical protein [Enterococcus faecium E1039]
gi|291601156|gb|EFF31444.1| conserved hypothetical protein [Enterococcus faecium E1039]
Length = 103
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L S AH L + +GK G+ ++ E LE EL+K+ + + E+
Sbjct: 6 KQKRFLRSKAHHLQPIFQ---IGKGGINSAMIVQIGEALEKRELIKVSLLQNTDEIAEEA 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ LE+ +V IG+ +++Y+PS
Sbjct: 63 AQVLEKEIDCEIVQIIGRVIVLYKPS 88
>gi|373106329|ref|ZP_09520632.1| YhbY family putative RNA-binding protein [Stomatobaculum longum]
gi|371652704|gb|EHO18112.1| YhbY family putative RNA-binding protein [Stomatobaculum longum]
Length = 99
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+ +T + + ETLE +ELLKI + + C + +++ +L T S VV IG+ ++
Sbjct: 22 IGKAALTPELTKAVNETLEKHELLKISVLQNCLEDPKEMAARLAARTKSEVVQVIGKKIV 81
Query: 113 IYR 115
+YR
Sbjct: 82 LYR 84
>gi|326497411|dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1070
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 44 LGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAV 103
L K+LK VGK GVT+G+V E EL+KI+ + + LE TG V
Sbjct: 157 LRKRLK---VGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNMRRTHEVLERKTGGLV 213
Query: 104 VSQIGQTVIIYR 115
+ + G T+I+YR
Sbjct: 214 IWRSGSTIILYR 225
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPG-ELEDVVKQLEEATGSAVVSQIGQTV 111
+G++ V GV + + + L + I G ++ ++ +LEEATGS +VS+ V
Sbjct: 963 IGRNNVITGVAKTIRTHFKKHPLAVVNIKNRADGTPVQQLISELEEATGSVLVSREPNKV 1022
Query: 112 IIYR 115
I+YR
Sbjct: 1023 ILYR 1026
>gi|209517187|ref|ZP_03266032.1| protein of unknown function UPF0044 [Burkholderia sp. H160]
gi|209502323|gb|EEA02334.1| protein of unknown function UPF0044 [Burkholderia sp. H160]
Length = 176
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P K++ ++ EL S AH+L + LVG G+TD V+ L A++L+KI++
Sbjct: 1 MPALKVSPDQRAELRSQAHALKPVV---LVGAEGLTDAVLAEIKVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + + + + +A + IG+ ++I++P
Sbjct: 58 EREERVAIYEAICDTLNAAPIQHIGKLLVIWKP 90
>gi|114562159|ref|YP_749672.1| hypothetical protein Sfri_0981 [Shewanella frigidimarina NCIMB 400]
gi|114333452|gb|ABI70834.1| protein of unknown function UPF0044 [Shewanella frigidimarina NCIMB
400]
Length = 99
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ L AHSL L+G +G+T+GV+ L +EL+K+K+ + E
Sbjct: 2 NLTTKQKQHLKGLAHSLKP---VVLLGGNGLTEGVLAEIDSALTHHELIKVKV-ASADRE 57
Query: 88 LED-VVKQLEEATGSAVVSQIGQTVIIYRPS 117
L++ +V + T S V IG ++I+R S
Sbjct: 58 LKNAIVDAIVRETQSTKVQLIGHVLVIFRHS 88
>gi|387770797|ref|ZP_10126972.1| RNA-binding protein, YhbY family [Pasteurella bettyae CCUG 2042]
gi|386903547|gb|EIJ68357.1| RNA-binding protein, YhbY family [Pasteurella bettyae CCUG 2042]
Length = 100
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L S AH L ++G +G+T+GV+ L +EL+K+KI +
Sbjct: 5 LSTKQKQFLKSLAHHLNP---VVMLGGNGLTEGVLAEIDNALAHHELIKVKISGSDRDTK 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ +V + T S V IG +I+YR S
Sbjct: 62 QLIVDAIVRETQSTAVQLIGHVLILYRQS 90
>gi|359449945|ref|ZP_09239416.1| RNA-binding protein [Pseudoalteromonas sp. BSi20480]
gi|358044258|dbj|GAA75665.1| RNA-binding protein [Pseudoalteromonas sp. BSi20480]
Length = 97
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 11/93 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI----HRTC 84
L+ K+K+ L AHSL + L+G +G+T+GVV LE +EL+K+K+ T
Sbjct: 3 LSNKQKQFLKGEAHSLKPVV---LLGSNGLTEGVVMEIQSALEIHELIKVKVPTDDRETK 59
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E +V++ TG+ + IG T+++YR S
Sbjct: 60 ALIFEAIVRE----TGATKLQTIGHTIVLYRQS 88
>gi|373454564|ref|ZP_09546430.1| YhbY family putative RNA-binding protein [Dialister succinatiphilus
YIT 11850]
gi|371935839|gb|EHO63582.1| YhbY family putative RNA-binding protein [Dialister succinatiphilus
YIT 11850]
Length = 96
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S A SL ++ +GK G+T VV S + L A EL+K+KI++ ++
Sbjct: 2 LTGKQKQYLKSEAVSLPAYVQ---IGKEGMTSSVVQSVEDVLLARELVKVKINQNSDEDI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
D L E +V IG+ ++++
Sbjct: 59 RDTASLLAEKLDCEIVQIIGRNCVLFK 85
>gi|343519402|ref|ZP_08756385.1| RNA-binding protein, YhbY family [Haemophilus pittmaniae HK 85]
gi|343392768|gb|EGV05330.1| RNA-binding protein, YhbY family [Haemophilus pittmaniae HK 85]
Length = 99
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+ K+K+ L AH L ++G +G+T+GV+ L +EL+K+K+
Sbjct: 1 MTTLSTKQKQYLKGLAHHLNP---VVMLGANGLTEGVLAEIDNALNHHELIKVKVAGADR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T ++ V IG +++YRPS
Sbjct: 58 DTKQLIIDAIVRETKASNVQTIGHILVLYRPS 89
>gi|309791920|ref|ZP_07686402.1| protein of unknown function UPF0044 [Oscillochloris trichoides
DG-6]
gi|308226038|gb|EFO79784.1| protein of unknown function UPF0044 [Oscillochloris trichoides DG6]
Length = 100
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 39 SYAHSLGKKLKCQ-LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
+Y L LK L+GK G+T+ V+ L+A+EL+K++ E +++ + E
Sbjct: 10 NYLRGLANPLKPHVLLGKQGLTEQVIEKIERELDAHELIKVRF-LEYKEERKELTATIVE 68
Query: 98 ATGSAVVSQIGQTVIIYR 115
ATG+A+VS IG +YR
Sbjct: 69 ATGAALVSLIGHVATLYR 86
>gi|418961115|ref|ZP_13513002.1| hypothetical protein SMXD51_03988 [Lactobacillus salivarius SMXD51]
gi|380344782|gb|EIA33128.1| hypothetical protein SMXD51_03988 [Lactobacillus salivarius SMXD51]
Length = 103
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL K+K+ L S AH L + +GK GV++ + ++ L+ ELLK+ I + E
Sbjct: 2 KLRGKQKRYLRSEAHHLKPIFQ---IGKDGVSEVWLDEVLKALDKRELLKVNILQNSLVE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+E+V + +E + + V+ IG +++++ S
Sbjct: 59 VEEVKEFIENNSDAQVIQTIGNVLVLFKKS 88
>gi|197301713|ref|ZP_03166783.1| hypothetical protein RUMLAC_00439 [Ruminococcus lactaris ATCC
29176]
gi|197299153|gb|EDY33683.1| RNA-binding protein, YhbY family [Ruminococcus lactaris ATCC 29176]
Length = 96
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L A ++ + +GK+ + G+ + E L+A EL+KI + C +
Sbjct: 1 MTTKQRAYLKGLAMTMDPIFQ---IGKASMNPGLTQAVSEALDARELIKISVLNNCMDDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ + L + T S +V IG+ +++YR
Sbjct: 58 RELAETLAQRTRSEIVQVIGKKIVLYR 84
>gi|145636181|ref|ZP_01791851.1| 23S rRNA methyltransferase J [Haemophilus influenzae PittHH]
gi|145270703|gb|EDK10636.1| 23S rRNA methyltransferase J [Haemophilus influenzae PittHH]
Length = 115
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 13 VEEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEA 72
+E++ + + L+ K+K+ L AH L ++G +G+T+GV+ L
Sbjct: 4 IEKINRSFLLGILMTTLSTKQKQFLKGLAHHLNP---VVMLGGNGLTEGVLAEIENALNH 60
Query: 73 NELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+EL+K+K+ + ++ + T +A V IG +++YRPS
Sbjct: 61 HELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVLYRPS 105
>gi|237745682|ref|ZP_04576162.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229377033|gb|EEO27124.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 154
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 11/93 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIH---RTC 84
KLT ++ L S AH+L + ++G +G+TD V+ L+A+ L+KI++ R
Sbjct: 3 KLTPAQRSLLRSQAHNLDPVV---MIGDAGLTDAVLKEIAVNLDAHGLIKIRVFGDDRLA 59
Query: 85 PGE-LEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E L+ + +QL+ +A + IG+ ++IYRP
Sbjct: 60 RLEMLQSICQQLD----AAPIQHIGKLLVIYRP 88
>gi|378822242|ref|ZP_09845051.1| RNA-binding protein, YhbY family [Sutterella parvirubra YIT 11816]
gi|378598934|gb|EHY32013.1| RNA-binding protein, YhbY family [Sutterella parvirubra YIT 11816]
Length = 177
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 37 LASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLE 96
L + AH L + L+G +G+T+ V+ L+A+EL+K+++ E E + ++
Sbjct: 14 LRAQAHHLDPVV---LLGANGLTESVMKEIDRELKAHELIKVRVPTDDREEREAIYAEIA 70
Query: 97 EATGSAVVSQIGQTVIIYRPS 117
E G A V IG+ ++++RP+
Sbjct: 71 ETLGCARVQMIGKLLVLWRPA 91
>gi|377809845|ref|YP_005005066.1| putative RNA-binding protein [Pediococcus claussenii ATCC BAA-344]
gi|361056586|gb|AEV95390.1| putative RNA-binding protein, YhbY family [Pediococcus claussenii
ATCC BAA-344]
Length = 103
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K+K+ L + AH+ VGK+G+T + L+ +EL+KI I + E DV
Sbjct: 6 KQKRFLRAQAHNFHPMFS---VGKNGLTTNWLKQLSGALDNHELIKINIQQNSDVETSDV 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRV 133
+E+ T VV IG+ +++++ S + E+K++ + +V
Sbjct: 63 RSFIEDQTDIQVVQIIGRVLVLFKVS----QFEDKREISDQV 100
>gi|417845634|ref|ZP_12491660.1| RNA-binding protein [Haemophilus haemolyticus M21639]
gi|341954703|gb|EGT81176.1| RNA-binding protein [Haemophilus haemolyticus M21639]
Length = 99
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+ K+K+ L AH L + ++G +G+T+GV+ L+ +EL+K+K+
Sbjct: 1 MTTLSTKQKQFLKGLAHHLNPVV---MLGGNGLTEGVLAEIENALDHHELIKVKVAGADR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T +A V IG +++YRPS
Sbjct: 58 ETKQLIIDAIVRETKAAQVQTIGHILVLYRPS 89
>gi|381152049|ref|ZP_09863918.1| putative RNA-binding protein, YhbY family [Methylomicrobium album
BG8]
gi|380884021|gb|EIC29898.1| putative RNA-binding protein, YhbY family [Methylomicrobium album
BG8]
Length = 109
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 33 EKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELED-- 90
+KK L + AHS + ++G++G++ V+ L+ +ELLK++I E ED
Sbjct: 5 DKKRLRAEAHSHKPVI---MIGQAGLSPAVLAEVEIALDCHELLKVRIR----AEREDRK 57
Query: 91 -VVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ ATG+ ++ IGQ ++YRP+
Sbjct: 58 TIGDEIVAATGAELIQMIGQIAVLYRPN 85
>gi|333984954|ref|YP_004514164.1| hypothetical protein [Methylomonas methanica MC09]
gi|333808995|gb|AEG01665.1| protein of unknown function UPF0044 [Methylomonas methanica MC09]
Length = 88
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 33 EKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVV 92
EKK+L + AH L + ++G+SG+T V+ L+A+EL+K+KI R E +
Sbjct: 5 EKKKLKAQAHPLKPVV---MIGQSGLTPAVLKEINVALDAHELIKVKI-RAERDERTVIS 60
Query: 93 KQLEEATGSAVVSQIGQTVIIYR 115
+Q+ T + +V +GQ +IYR
Sbjct: 61 EQICTETQAELVQSVGQVAVIYR 83
>gi|389759496|ref|ZP_10191781.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Rhodanobacter sp. 115]
gi|388430423|gb|EIL87595.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Rhodanobacter sp. 115]
Length = 98
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ +++ L S AH L + L+G G TD V+ L +EL+K+K+ E
Sbjct: 3 LSPSQRRYLRSLAHDLNPVI---LLGAKGATDAVLKELDGALSHHELVKVKLSGGDKAER 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + L TG+ V QIG V+++R
Sbjct: 60 DAQIDFLAGGTGAENVQQIGHVVVLFR 86
>gi|419844907|ref|ZP_14368194.1| RNA-binding protein, YhbY family [Haemophilus parainfluenzae
HK2019]
gi|386416833|gb|EIJ31325.1| RNA-binding protein, YhbY family [Haemophilus parainfluenzae
HK2019]
Length = 99
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L ++G +G+T+GV+ L +EL+K+KI
Sbjct: 4 LSTKQKQFLKGLAHHLSP---VVMLGGNGLTEGVLAEIDNALNHHELIKVKIAGADRETK 60
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
+ ++ + T S+ V IG +++YRPS EE K Q R
Sbjct: 61 QLIIDAIVRETKSSNVQTIGHILVLYRPS------EESKIQLPR 98
>gi|197287222|ref|YP_002153094.1| RNA-binding protein [Proteus mirabilis HI4320]
gi|194684709|emb|CAR46684.1| putative RNA-binding protein [Proteus mirabilis HI4320]
Length = 97
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K+ + L AH L ++G +G+T+GV+ L +EL+K+KI GE
Sbjct: 3 LNKKQIQHLKGLAHHLNP---VVMIGNNGLTEGVLAEIEIALAHHELIKVKI----AGED 55
Query: 89 EDV----VKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
DV V + +G+ V IG+ V++YRPS R
Sbjct: 56 RDVKNLIVAAIVRESGAQNVQVIGKMVVLYRPSEAR 91
>gi|269797873|ref|YP_003311773.1| hypothetical protein [Veillonella parvula DSM 2008]
gi|282848909|ref|ZP_06258299.1| RNA-binding protein, YhbY family [Veillonella parvula ATCC 17745]
gi|294791762|ref|ZP_06756910.1| probable RNA-binding protein YqeI [Veillonella sp. 6_1_27]
gi|294793623|ref|ZP_06758760.1| probable RNA-binding protein YqeI [Veillonella sp. 3_1_44]
gi|269094502|gb|ACZ24493.1| protein of unknown function UPF0044 [Veillonella parvula DSM 2008]
gi|282581414|gb|EFB86807.1| RNA-binding protein, YhbY family [Veillonella parvula ATCC 17745]
gi|294455193|gb|EFG23565.1| probable RNA-binding protein YqeI [Veillonella sp. 3_1_44]
gi|294456992|gb|EFG25354.1| probable RNA-binding protein YqeI [Veillonella sp. 6_1_27]
Length = 94
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K+K+ L S A ++ ++ +GK+G+ D V+ S + A EL+K+K+H P E
Sbjct: 1 MTGKQKRYLRSLAATIPPVVQ---IGKNGLEDSVIDSARAAITARELIKVKLHNNSP-ED 56
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + + L + G+ +V IG ++Y+
Sbjct: 57 KTIFQDLADMLGAELVQVIGFNGVLYK 83
>gi|227357083|ref|ZP_03841453.1| RNA binding protein [Proteus mirabilis ATCC 29906]
gi|425070194|ref|ZP_18473308.1| RNA-binding protein YhbY [Proteus mirabilis WGLW6]
gi|425074018|ref|ZP_18477123.1| RNA-binding protein YhbY [Proteus mirabilis WGLW4]
gi|227162775|gb|EEI47738.1| RNA binding protein [Proteus mirabilis ATCC 29906]
gi|404594429|gb|EKA95011.1| RNA-binding protein YhbY [Proteus mirabilis WGLW4]
gi|404595710|gb|EKA96246.1| RNA-binding protein YhbY [Proteus mirabilis WGLW6]
Length = 98
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K+ + L AH L ++G +G+T+GV+ L +EL+K+KI GE
Sbjct: 4 LNKKQIQHLKGLAHHLNP---VVMIGNNGLTEGVLAEIEIALAHHELIKVKI----AGED 56
Query: 89 EDV----VKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
DV V + +G+ V IG+ V++YRPS R
Sbjct: 57 RDVKNLIVAAIVRESGAQNVQVIGKMVVLYRPSEAR 92
>gi|413918579|gb|AFW58511.1| CFM2 [Zea mays]
Length = 1039
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 19 PSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKI 78
PS + L LP+ E + L + K+LK VGK+G+T+G+V E E++K+
Sbjct: 136 PSAAELALPR---DELRRLQGIGIRVRKRLK---VGKAGITEGIVNGIHERWRNAEVVKL 189
Query: 79 KIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + + LE TG V+ + G T+I+YR
Sbjct: 190 RCEDVWAMNMRRTHEILERKTGGLVIWRSGSTIILYR 226
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 27 PKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPG 86
PKLT +E L AH+L +G+S G+ S I+ E E+ KI + R
Sbjct: 431 PKLTDREMTILRRLAHALPFHYA---LGRSSNLQGLAASMIKLWERCEVAKIALKRDAHN 487
Query: 87 -ELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ E + ++++E TG ++S+ ++++ YR
Sbjct: 488 TDSELITEEVKELTGGTLLSRDKESIVFYR 517
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 15 EVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANE 74
+ +S S SPL L+ +E+ L A + KK +G++ GV + + +
Sbjct: 895 DAESLSVSPLRAAPLSNQERLVLRKQALQM-KKRPVLSIGRNNAITGVAKTIKTHFKKHP 953
Query: 75 LLKIKIHRTCPG-ELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
L + I G ++ ++ +LEEATGS +VS+ VI+YR
Sbjct: 954 LAIVNIKNRADGTPIQQLISELEEATGSVLVSRETNKVILYR 995
>gi|398837034|ref|ZP_10594347.1| putative RNA-binding protein, YhbY family [Herbaspirillum sp.
YR522]
gi|398209603|gb|EJM96273.1| putative RNA-binding protein, YhbY family [Herbaspirillum sp.
YR522]
Length = 152
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIH----RT 83
KLT E+ EL + AH+L + +VG+SG+++ V+ +L + L+K+++
Sbjct: 3 KLTPAERSELRAQAHALNPVV---IVGESGLSESVLKEIDNSLNFHGLIKVRVFGDDREA 59
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQA 130
G + + +QL+ +A V IG+ ++IYRP K EEKK+ A
Sbjct: 60 RIGIYDAICEQLD----AAQVQHIGKLLVIYRPK----KDEEKKKSA 98
>gi|261380965|ref|ZP_05985538.1| RNA-binding protein YhbY [Neisseria subflava NJ9703]
gi|284796224|gb|EFC51571.1| RNA-binding protein YhbY [Neisseria subflava NJ9703]
Length = 95
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ KE L + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLSTKEILALKAQAHHLHPVV---IVGQQGLTDSVIKETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ L E G+ +V IG+ ++++R
Sbjct: 62 RIEICDALCETLGAQLVQHIGKLLVLWR 89
>gi|255280883|ref|ZP_05345438.1| putative RNA-binding protein YqeI [Bryantella formatexigens DSM
14469]
gi|255268331|gb|EET61536.1| RNA-binding protein, YhbY family [Marvinbryantia formatexigens DSM
14469]
Length = 97
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L S A ++ + +GKS +T + E L+A EL+K+ + + C +
Sbjct: 1 MTSKQRAYLKSLAMTMEPIFQ---IGKSSLTPENTKAIQEALDARELIKVSVLQNCTDDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++ + + E T S VV IG+ +++Y+
Sbjct: 58 KEIAQMMAERTRSQVVQVIGKKIVLYK 84
>gi|289207886|ref|YP_003459952.1| hypothetical protein TK90_0701 [Thioalkalivibrio sp. K90mix]
gi|288943517|gb|ADC71216.1| protein of unknown function UPF0044 [Thioalkalivibrio sp. K90mix]
Length = 99
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT +++ L S AH + +G++G+TD VV + L +EL+KIK++
Sbjct: 2 NLTDAQRRHLRSLAHP---RKPIVTIGRNGLTDAVVKELEQALAHHELVKIKVNIGDREA 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYR 115
V+ L E TG A+V +IG ++R
Sbjct: 59 RNGTVEDLCERTGGALVQRIGYVATLFR 86
>gi|255027218|ref|ZP_05299204.1| hypothetical protein LmonocytFSL_14358 [Listeria monocytogenes FSL
J2-003]
Length = 96
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT +K+ L AH++ + VGK V+ ++ E LEA EL+KI I + C +
Sbjct: 2 LTATQKRFLRKEAHNIQPIFQ---VGKGSVSPNLIIHVKEALEARELIKISILQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
+ V +++ + IG+T+I+Y+ S+ + ++
Sbjct: 59 QTVAEKIXRSFRRGDRQVIGRTIILYKTSVNKQQI 93
>gi|333374824|ref|ZP_08466658.1| CRS1/YhbY domain protein [Kingella kingae ATCC 23330]
gi|332974577|gb|EGK11497.1| CRS1/YhbY domain protein [Kingella kingae ATCC 23330]
Length = 111
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT ++ EL + AH L + +VG+ G+T+ VV I L+A+EL+K+++ E
Sbjct: 19 LTKQQIVELKARAHHLNPVV---MVGQKGLTEAVVAETITALQAHELIKVRVLGDDREER 75
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + L +AT + +V IG+ +++YR
Sbjct: 76 IAICQALCKATEAQLVQHIGKLLVLYR 102
>gi|329297292|ref|ZP_08254628.1| RNA-binding protein YhbY [Plautia stali symbiont]
Length = 97
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L ++G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKP---VVMLGGNGLTEGVLAEIEQALEHHELIKVKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ +V + T + V IG +++YRP+
Sbjct: 59 KQLIVDAIVRETKANNVQVIGNVLVLYRPA 88
>gi|116618828|ref|YP_819199.1| RNA-binding protein [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
gi|227431107|ref|ZP_03913165.1| RNA-binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|381337137|ref|YP_005174912.1| RNA-binding protein [Leuconostoc mesenteroides subsp. mesenteroides
J18]
gi|116097675|gb|ABJ62826.1| RNA-binding protein, KH domain [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227353147|gb|EEJ43315.1| RNA-binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|356645103|gb|AET30946.1| RNA-binding protein [Leuconostoc mesenteroides subsp. mesenteroides
J18]
Length = 103
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+LT K+K+ L S A++L VGK+G+T V + L EL+KI + ++
Sbjct: 2 QLTGKQKRYLRSQANTLSPIFS---VGKNGLTQNWVDEIVLALAKRELVKISLQQSADET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++V +E + V IG+TV++Y P+
Sbjct: 59 AKEVADFIEAHSDITVAQTIGRTVVLYLPA 88
>gi|420143155|ref|ZP_14650658.1| Hypothetical protein Y7C_91105 [Lactococcus garvieae IPLA 31405]
gi|391856960|gb|EIT67494.1| Hypothetical protein Y7C_91105 [Lactococcus garvieae IPLA 31405]
Length = 102
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S A ++ ++ +GKSGV++ ++TS +A EL+K+ I +
Sbjct: 3 LTGKQKRYLRSLAVNIRPIVQ---IGKSGVSNEILTSIRHAADARELIKVNILQNSDETA 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+DV ++E G VV IG+ V++++ S
Sbjct: 60 KDVAAMIDE-MGLNVVQIIGRNVVVFKVS 87
>gi|325578453|ref|ZP_08148588.1| RNA-binding protein YhbY [Haemophilus parainfluenzae ATCC 33392]
gi|325160189|gb|EGC72318.1| RNA-binding protein YhbY [Haemophilus parainfluenzae ATCC 33392]
Length = 99
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L ++G +G+T+GV+ L +EL+K+KI
Sbjct: 4 LSTKQKQFLKGLAHHLSP---VVMLGGNGLTEGVLAEIDNALNHHELIKVKIAGADRETK 60
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T S+ V IG +++YRPS
Sbjct: 61 QLIIDAIVRETKSSNVQTIGHILVLYRPS 89
>gi|345430284|ref|YP_004823404.1| RNA-binding protein [Haemophilus parainfluenzae T3T1]
gi|301156347|emb|CBW15818.1| predicted RNA-binding protein [Haemophilus parainfluenzae T3T1]
Length = 99
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L + ++G +G+T+GV+ L +EL+K+KI
Sbjct: 4 LSTKQKQFLKGLAHHLSPVV---MLGGNGLTEGVLAEIDNALNHHELIKVKIAGADRETK 60
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T S+ V IG +++YRPS
Sbjct: 61 QLIIDAIVRETQSSNVQTIGHILVLYRPS 89
>gi|254468154|ref|ZP_05081560.1| CRS1 / YhbY domain superfamily [beta proteobacterium KB13]
gi|207086964|gb|EDZ64247.1| CRS1 / YhbY domain superfamily [beta proteobacterium KB13]
Length = 95
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K+ K L + AH L + VG G+T+ V++ T+ +EL+KI+I +
Sbjct: 2 LNNKQIKALKAEAHHLKTTVS---VGSKGITNQVISEIANTINFHELIKIQIQSDTKQDR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ KQ+ +AT S V IG+ +I++
Sbjct: 59 LEIAKQICQATESEFVQLIGKQAVIFK 85
>gi|375109213|ref|ZP_09755463.1| RNA binding protein [Alishewanella jeotgali KCTC 22429]
gi|397170788|ref|ZP_10494198.1| RNA binding protein [Alishewanella aestuarii B11]
gi|374570772|gb|EHR41905.1| RNA binding protein [Alishewanella jeotgali KCTC 22429]
gi|396087262|gb|EJI84862.1| RNA binding protein [Alishewanella aestuarii B11]
Length = 98
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 17/108 (15%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + L+G +G+T+GVV L +EL+KIK+ PGE
Sbjct: 3 LTNKQKQFLKSKAHDLKPVI---LLGANGLTEGVVAEIDNALNFHELIKIKV----PGED 55
Query: 89 ED----VVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
+ V+ + T + V IG+ +++YR S E+KK Q R
Sbjct: 56 REQKVLVMDAIIRETKAEKVQVIGKILVLYRQS------EDKKIQLPR 97
>gi|336426811|ref|ZP_08606819.1| hypothetical protein HMPREF0994_02825 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010451|gb|EGN40434.1| hypothetical protein HMPREF0994_02825 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 96
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTC---P 85
+T K++ L S A SL + +GK +T V + E EL+KI + + C P
Sbjct: 1 MTSKQRAYLKSLASSLDPIFQ---IGKGSLTPEVTEAISEAFNTKELIKIAVLKNCFDDP 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
GE+ ++ E T S VV IG+ +++Y+ S K+E
Sbjct: 58 GEMAQMI---AERTKSQVVQVIGKKIVLYKESKDHKKIE 93
>gi|377555840|ref|ZP_09785568.1| hypothetical protein eofBa_02161, partial [endosymbiont of
Bathymodiolus sp.]
Length = 102
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ KLT +KK L + H+L +VG+ G+++ V+ T+ +ELLKIKI
Sbjct: 3 MKKLTNNQKKFLRARGHTLKS---IVMVGQHGLSEAVLAELESTMTKHELLKIKIRAEDR 59
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + ++ ++ T + ++ IG ++IYR
Sbjct: 60 EDRQKMIDEIVNITQAHLIQVIGNVMVIYR 89
>gi|407716712|ref|YP_006837992.1| 23S rRNA methyltransferase J [Cycloclasticus sp. P1]
gi|407257048|gb|AFT67489.1| 23S rRNA methyltransferase J [Cycloclasticus sp. P1]
Length = 95
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ ++KK+L ++AHSL ++ +G+SG+T V+ + +EL+K+K+ +
Sbjct: 3 LSNQQKKKLKAHAHSLKPVVR---LGQSGLTSNVLDEIESAITHHELIKVKVSADDRDDK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ +++++ + T S ++ IG + YR +
Sbjct: 60 KAIIQEIADKTASELIQSIGFMAVFYREN 88
>gi|354557949|ref|ZP_08977206.1| RNA-binding, CRM domain protein [Desulfitobacterium metallireducens
DSM 15288]
gi|353549623|gb|EHC19064.1| RNA-binding, CRM domain protein [Desulfitobacterium metallireducens
DSM 15288]
Length = 96
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + + + L+ VGK GVT+ VVTS E +E+ EL+K ++ + +
Sbjct: 2 LTGKQKRFLRAMGNEMDPVLQ---VGKEGVTEAVVTSANEVIESRELIKGRVLQNSAEDP 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + L G+ +V IG+ ++Y+ S
Sbjct: 59 KAAAEDLANRMGAELVQVIGRNFLLYKES 87
>gi|298368447|ref|ZP_06979765.1| CRS1 / YhbY domain protein [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282450|gb|EFI23937.1| CRS1 / YhbY domain protein [Neisseria sp. oral taxon 014 str.
F0314]
Length = 94
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ KE EL + AH L + +VG+ G+T+ V+ L A+EL+KI+I E
Sbjct: 5 KLSTKEILELKARAHHLNPVV---MVGQQGLTEAVIKETDAALTAHELIKIRIFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ L EA + V IG+ ++++R
Sbjct: 62 RIAICDALCEAVDAQPVQHIGKLLVLWR 89
>gi|16273243|ref|NP_439484.1| hypothetical protein HI1333 [Haemophilus influenzae Rd KW20]
gi|68250002|ref|YP_249114.1| RNA-binding protein [Haemophilus influenzae 86-028NP]
gi|145629418|ref|ZP_01785216.1| transcription elongation factor GreA [Haemophilus influenzae
22.1-21]
gi|145630775|ref|ZP_01786553.1| 23S rRNA methyltransferase J [Haemophilus influenzae R3021]
gi|145634954|ref|ZP_01790661.1| transcription elongation factor GreA [Haemophilus influenzae
PittAA]
gi|145638912|ref|ZP_01794520.1| transcription elongation factor GreA [Haemophilus influenzae
PittII]
gi|145641636|ref|ZP_01797213.1| 23S rRNA methyltransferase J [Haemophilus influenzae R3021]
gi|148826968|ref|YP_001291721.1| 23S rRNA methyltransferase J [Haemophilus influenzae PittGG]
gi|229847492|ref|ZP_04467589.1| 23S rRNA methyltransferase J [Haemophilus influenzae 7P49H1]
gi|329123414|ref|ZP_08251978.1| RNA-binding protein YhbY [Haemophilus aegyptius ATCC 11116]
gi|378697563|ref|YP_005179521.1| RNA-binding protein [Haemophilus influenzae 10810]
gi|386265911|ref|YP_005829403.1| RNA-binding protein YhbY [Haemophilus influenzae R2846]
gi|3025185|sp|P71376.1|Y1333_HAEIN RecName: Full=RNA-binding protein HI_1333
gi|1574791|gb|AAC22977.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|68058201|gb|AAX88454.1| predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Haemophilus influenzae 86-028NP]
gi|144978261|gb|EDJ88025.1| transcription elongation factor GreA [Haemophilus influenzae
22.1-21]
gi|144983657|gb|EDJ91117.1| 23S rRNA methyltransferase J [Haemophilus influenzae R3021]
gi|145267820|gb|EDK07817.1| transcription elongation factor GreA [Haemophilus influenzae
PittAA]
gi|145271884|gb|EDK11793.1| transcription elongation factor GreA [Haemophilus influenzae
PittII]
gi|145273683|gb|EDK13552.1| 23S rRNA methyltransferase J [Haemophilus influenzae 22.4-21]
gi|148718210|gb|ABQ99337.1| 23S rRNA methyltransferase J [Haemophilus influenzae PittGG]
gi|229809633|gb|EEP45360.1| 23S rRNA methyltransferase J [Haemophilus influenzae 7P49H1]
gi|301170079|emb|CBW29683.1| predicted RNA-binding protein [Haemophilus influenzae 10810]
gi|309750886|gb|ADO80870.1| RNA-binding protein YhbY [Haemophilus influenzae R2866]
gi|309973147|gb|ADO96348.1| RNA-binding protein YhbY [Haemophilus influenzae R2846]
gi|327470996|gb|EGF16451.1| RNA-binding protein YhbY [Haemophilus aegyptius ATCC 11116]
Length = 99
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+ K+K+ L AH L + ++G +G+T+GV+ L +EL+K+K+
Sbjct: 1 MTTLSTKQKQFLKGLAHHLNPVV---MLGGNGLTEGVLAEIENALNHHELIKVKVAGADR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T +A V IG +++YRPS
Sbjct: 58 ETKQLIINAIVRETKAAQVQTIGHILVLYRPS 89
>gi|317500386|ref|ZP_07958610.1| hypothetical protein HMPREF1026_00553 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089607|ref|ZP_08338506.1| hypothetical protein HMPREF1025_02089 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438925|ref|ZP_08618546.1| hypothetical protein HMPREF0990_00940 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316898141|gb|EFV20188.1| hypothetical protein HMPREF1026_00553 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330404975|gb|EGG84513.1| hypothetical protein HMPREF1025_02089 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336017415|gb|EGN47177.1| hypothetical protein HMPREF0990_00940 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 97
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
+Y SL K++ +GKS ++ G+ + E LEA EL+KI + C + ++ + +
Sbjct: 7 AYLKSLAMKIEPIFQIGKSSMSPGLTEAVSEALEARELIKISVLNNCGDDPRELAEIIAG 66
Query: 98 ATGSAVVSQIGQTVIIYR 115
T S VV IG+ +++YR
Sbjct: 67 RTRSQVVQVIGKKIVLYR 84
>gi|225075312|ref|ZP_03718511.1| hypothetical protein NEIFLAOT_00315 [Neisseria flavescens
NRL30031/H210]
gi|224953487|gb|EEG34696.1| hypothetical protein NEIFLAOT_00315 [Neisseria flavescens
NRL30031/H210]
Length = 107
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ KE L + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 17 KLSTKEILALKAQAHHLHPVV---MVGQQGLTDSVIKETDAALTAHELIKVRVFGDDRAE 73
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ L E G+ +V IG+ ++++R
Sbjct: 74 RIEICNALCETLGAQLVQHIGKLLVLWR 101
>gi|27065143|pdb|1JO0|A Chain A, Structure Of Hi1333, A Hypothetical Protein From
Haemophilus Influenzae With Structural Similarity To
Rna-binding Proteins
gi|27065144|pdb|1JO0|B Chain B, Structure Of Hi1333, A Hypothetical Protein From
Haemophilus Influenzae With Structural Similarity To
Rna-binding Proteins
Length = 98
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L + ++G +G+T+GV+ L +EL+K+K+
Sbjct: 3 LSTKQKQFLKGLAHHLNPVV---MLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T +A V IG +++YRPS
Sbjct: 60 QLIINAIVRETKAAQVQTIGHILVLYRPS 88
>gi|399116665|emb|CCG19473.1| putative RNA-binding ribosomal protein [Taylorella asinigenitalis
14/45]
Length = 195
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTC 84
KL+ KEK L S AHSL + ++G +G+T V+ L A+ L+KIK+ R+
Sbjct: 9 KLSSKEKSLLRSSAHSLKPVV---MIGDNGLTKSVLQEIDHNLNAHGLIKIKVAGDDRSY 65
Query: 85 PGELED-VVKQLEEATGSAVVSQIGQTVIIYR 115
EL D ++K L ++S +G+ + IYR
Sbjct: 66 RIELADQIIKNLN----CEIISHVGKILTIYR 93
>gi|338530288|ref|YP_004663622.1| hypothetical protein LILAB_03095 [Myxococcus fulvus HW-1]
gi|337256384|gb|AEI62544.1| hypothetical protein LILAB_03095 [Myxococcus fulvus HW-1]
Length = 96
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+++ L + H L + +VG++GVT+GV+ + + L+ +EL+K+KI+ P
Sbjct: 3 LTGKQRRHLRALGHHLEPVV---IVGQAGVTEGVIAAVEQALQDHELIKVKINE-GPETR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ ++ E T + + +G+T + ++
Sbjct: 59 QEAAARIAEGTQAELAQLLGRTALFFK 85
>gi|229844054|ref|ZP_04464195.1| 23S rRNA methyltransferase J [Haemophilus influenzae 6P18H1]
gi|229813048|gb|EEP48736.1| 23S rRNA methyltransferase J [Haemophilus influenzae 6P18H1]
Length = 99
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+ K+K+ L AH L + ++G +G+T+GV+ L +EL+K+K+
Sbjct: 1 MTTLSTKQKQFLKGLAHHLNPVV---MLGGNGLTEGVLAEIENALNHHELIKVKVAGADR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T +A V IG +++YRPS
Sbjct: 58 ETKQLIINAIVRETKAAQVQTIGHILVLYRPS 89
>gi|20089090|ref|NP_615165.1| hypothetical protein MA0192 [Methanosarcina acetivorans C2A]
gi|19913953|gb|AAM03645.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 86
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCP--GELEDVVKQLEEATGSAVVSQIGQT 110
+GK+GVT+ ++ + ++AN L+K+K+ ++ +L+ + +L EAT S ++ G+T
Sbjct: 22 IGKNGVTETLIEELNKQIKANRLVKVKVLKSAEEGKDLKTIADELAEATRSTLIDVRGRT 81
Query: 111 VIIYR 115
V++YR
Sbjct: 82 VVLYR 86
>gi|419801578|ref|ZP_14326802.1| RNA-binding protein, YhbY family [Haemophilus parainfluenzae HK262]
gi|385193494|gb|EIF40856.1| RNA-binding protein, YhbY family [Haemophilus parainfluenzae HK262]
Length = 99
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L ++G +G+T+GV+ L +EL+K+KI
Sbjct: 4 LSTKQKQFLKGLAHHLSP---VVMLGGNGLTEGVLAEIDNALNHHELIKVKIAGADRETK 60
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T S+ V IG +++YRPS
Sbjct: 61 QLIIDAIVRETKSSKVQTIGHILVLYRPS 89
>gi|227484967|ref|ZP_03915283.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
51172]
gi|227237122|gb|EEI87137.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
51172]
Length = 94
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L AH + +GK ++D ++ + E LEA EL+KIKI +
Sbjct: 2 LTGKQRAMLKQEAHDFKPIIN---IGKFSISDQLLDAIDEALEARELIKIKILNNNLDDA 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRM 121
+ ++ + E +S IG IYR + T +
Sbjct: 59 DYIIDTIVEKLNCEFISHIGSIFTIYRKNDTNI 91
>gi|186475642|ref|YP_001857112.1| hypothetical protein Bphy_0877 [Burkholderia phymatum STM815]
gi|184192101|gb|ACC70066.1| protein of unknown function UPF0044 [Burkholderia phymatum STM815]
Length = 187
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P K+T +++ +L S AH+L + ++G G+TD V+ L+A++L+KI++
Sbjct: 1 MPALKVTSEQRADLRSQAHALKPVV---IIGAEGLTDAVLAEIKVHLKAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + ++ + +A + IG+ ++I++P
Sbjct: 58 EREERVAIYDEICDRLNAAPIQHIGKLLVIWKP 90
>gi|254245760|ref|ZP_04939081.1| hypothetical protein BCPG_00478 [Burkholderia cenocepacia PC184]
gi|124870536|gb|EAY62252.1| hypothetical protein BCPG_00478 [Burkholderia cenocepacia PC184]
Length = 253
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L+A++L+KI++
Sbjct: 80 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLKEIKVHLDAHQLIKIRVFGD 136
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + ++ + +A + IG+ ++I++P
Sbjct: 137 ERDERIAIYDEICDRLNAAPIQHIGKLLVIWKP 169
>gi|440229142|ref|YP_007342935.1| putative RNA-binding protein, YhbY family [Serratia marcescens
FGI94]
gi|440050847|gb|AGB80750.1| putative RNA-binding protein, YhbY family [Serratia marcescens
FGI94]
Length = 97
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTC 84
L K+K+ L AH L + ++G +G+T+GV+ + L +EL+K+KI R
Sbjct: 2 NLNNKQKQHLKGLAHPLKPVV---MLGNNGLTEGVLAEIEQALTHHELIKVKIATEDRET 58
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ D + + T + V IG T+I+YRPS
Sbjct: 59 KALIADAIVR---ETKACNVQIIGNTLILYRPS 88
>gi|336449998|ref|ZP_08620455.1| putative RNA-binding protein, YhbY family [Idiomarina sp. A28L]
gi|336283155|gb|EGN76362.1| putative RNA-binding protein, YhbY family [Idiomarina sp. A28L]
Length = 97
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+L+ K+K+ L AH L L+G +G+T+GV+ LE +EL+KIK+ P E
Sbjct: 2 QLSNKQKQFLKGLAHPLKP---VVLLGGNGLTEGVLAEIELALEHHELIKIKV----PEE 54
Query: 88 LEDVVKQLEEA----TGSAVVSQIGQTVIIYRPS 117
++ + + +A T V IG+T+++YRP+
Sbjct: 55 DREMRQAIYDAIVRETAGVQVQVIGKTLVLYRPA 88
>gi|284006660|emb|CBA71922.1| RNA-binding protein [Arsenophonus nasoniae]
Length = 97
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTCP 85
L K+ + L S AH L ++G +G+T+GV+ ++L +EL+KIKI R
Sbjct: 3 LNKKQIQYLKSLAHHLNP---VVMIGNNGLTEGVLAEIEQSLSYHELIKIKIASEDRDTK 59
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
+ + + + +AT V IG+ +I+YRPS T
Sbjct: 60 NLIANAIVRETDATN---VQIIGKILILYRPSDTH 91
>gi|110833181|ref|YP_692040.1| hypothetical protein ABO_0320 [Alcanivorax borkumensis SK2]
gi|110646292|emb|CAL15768.1| conserved hypothetical protein TIGR00253 [Alcanivorax borkumensis
SK2]
Length = 104
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 44 LGKKLKCQLV-GKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSA 102
+G LK L+ G G++D V LE +EL+K+K++ E +V+ L E +
Sbjct: 14 IGHHLKPVLIFGDKGLSDNFVEELNLRLEDHELIKVKVNAETRDERAAIVQALTEKGSAE 73
Query: 103 VVSQIGQTVIIYRPS 117
++ +IG ++YRP+
Sbjct: 74 LIQRIGNIALLYRPA 88
>gi|260588591|ref|ZP_05854504.1| putative RNA-binding protein YqeI [Blautia hansenii DSM 20583]
gi|331082055|ref|ZP_08331183.1| hypothetical protein HMPREF0992_00107 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260541066|gb|EEX21635.1| putative RNA-binding protein YqeI [Blautia hansenii DSM 20583]
gi|330405650|gb|EGG85180.1| hypothetical protein HMPREF0992_00107 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 96
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GKS +T + E LEA EL+KI + + C + +++ L E T S VV IG+ ++
Sbjct: 22 IGKSSLTPENTAAVAEALEARELIKISVLQNCMDDPKEIAAVLAERTRSQVVQVIGKKIV 81
Query: 113 IYR 115
+Y+
Sbjct: 82 LYK 84
>gi|154986385|gb|ABS89146.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 668
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 19 PSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKI 78
PS + L LP+ E + L + K+LK VGK+G+T+G+V E E++K+
Sbjct: 123 PSAAELALPR---DELRRLQGIGIRVRKRLK---VGKAGITEGIVNGIHERWRNAEVVKL 176
Query: 79 KIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + + LE TG V+ + G T+I+YR
Sbjct: 177 RCEDVWAMNMRRTHEILERKTGGLVIWRSGSTIILYR 213
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 27 PKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPG 86
PKLT +E L AH+L +G+S G+ S I+ E E+ KI + R
Sbjct: 418 PKLTDREMTILRRLAHALPFHYA---LGRSSNLQGLAASMIKLWERCEVAKIALKRDAHN 474
Query: 87 -ELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ E + ++++E TG ++S+ ++++ YR
Sbjct: 475 TDSELITEEVKELTGGTLLSRDKESIVFYR 504
>gi|395005245|ref|ZP_10389137.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Acidovorax sp. CF316]
gi|394316825|gb|EJE53526.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Acidovorax sp. CF316]
Length = 158
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT E++E + AH L + LVG G+T V L A+ L+K+++
Sbjct: 1 MPQIQLTPAERREHRANAHHLDPVV---LVGGDGLTPAVQKEIDAALNAHGLIKVRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL--EEKKQQARRVYVRKESK 140
E + +QL +A + IG+ ++++RP + + E++ R V V K SK
Sbjct: 58 DRAARELMYQQLTADLNAAPIQHIGKLLVLWRPQPAKERTIDEDRMPGPRDVKVLKYSK 116
>gi|332655282|ref|ZP_08421022.1| putative RNA-binding protein YqeI [Ruminococcaceae bacterium D16]
gi|332515787|gb|EGJ45397.1| putative RNA-binding protein YqeI [Ruminococcaceae bacterium D16]
Length = 108
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K++ +L A+S+ L +VGK G+ D +V + LEA E++K ++
Sbjct: 3 LSSKQRAQLRGLANSIDTIL---IVGKDGIGDNLVKQANDALEAREIIKGRVLENSLMSA 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + L T S VV IG ++YRPS
Sbjct: 60 REAAEALAPLTRSEVVQVIGTKFVLYRPS 88
>gi|37528356|ref|NP_931701.1| hypothetical protein plu4537 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787794|emb|CAE16909.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 97
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K+ + L S AH L ++G +G+T+GV+ +TL +EL+K+KI GE
Sbjct: 3 LNKKQVQHLKSLAHPLKP---VVMIGNNGLTEGVLAEIEQTLSHHELIKVKI----AGED 55
Query: 89 EDVVKQLEEA----TGSAVVSQIGQTVIIYRPS 117
+ + +A TG+ V IG+T+++YR S
Sbjct: 56 RETKNLIADAIVRETGAYNVQVIGKTLVLYRQS 88
>gi|400289433|ref|ZP_10791462.1| hypothetical protein SRA_00842 [Streptococcus ratti FA-1 = DSM
20564]
gi|399922071|gb|EJN94886.1| hypothetical protein SRA_00842 [Streptococcus ratti FA-1 = DSM
20564]
Length = 103
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AHSL + +GK+G+ D + TS L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLKSQAHSLKPIVH---IGKNGLNDQIKTSIRNALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + LEE G V +IG+ +I+Y+ S
Sbjct: 60 HEVAEILEEEIGLETVLKIGRILILYKES 88
>gi|295677140|ref|YP_003605664.1| hypothetical protein BC1002_2094 [Burkholderia sp. CCGE1002]
gi|295436983|gb|ADG16153.1| protein of unknown function UPF0044 [Burkholderia sp. CCGE1002]
Length = 175
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P K++ ++ EL S AH+L + LVG G+TD V+ L A++L+KI++
Sbjct: 1 MPALKVSSDQRAELRSQAHALKPVV---LVGAEGLTDAVLAEIKVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + + + + +A + IG+ ++I++P
Sbjct: 58 EREERLAIYEGICDTLNAAPIQHIGKLLVIWKP 90
>gi|270602104|ref|ZP_06221569.1| conserved hypothetical protein TIGR00253 [Haemophilus influenzae
HK1212]
gi|270318241|gb|EFA29435.1| conserved hypothetical protein TIGR00253 [Haemophilus influenzae
HK1212]
Length = 99
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+ K+K+ L AH L + ++G +G+T+GV+ L +EL+K+K+
Sbjct: 1 MTTLSTKQKQFLKGLAHHLNPVV---MLGGNGLTEGVLAEIENALNYHELIKVKVAGADR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T +A V IG +++YRPS
Sbjct: 58 ETKQLIIDAIVRETKAAQVQTIGHILVLYRPS 89
>gi|119897676|ref|YP_932889.1| hypothetical protein azo1385 [Azoarcus sp. BH72]
gi|119670089|emb|CAL94002.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 153
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+LT ++EL + AH L + V +G+ VV L+A+EL+K+++ T +
Sbjct: 3 QLTPARRRELRASAHHLNPVVT---VAGNGLAPAVVAELERALQAHELIKVRVQGTERDQ 59
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIY 114
E ++ +L + G+A V IG ++++
Sbjct: 60 REALMVELCDKLGAAAVQHIGNILVVW 86
>gi|342904317|ref|ZP_08726118.1| RNA-binding protein [Haemophilus haemolyticus M21621]
gi|373467334|ref|ZP_09558633.1| RNA-binding protein, YhbY family [Haemophilus sp. oral taxon 851
str. F0397]
gi|417840219|ref|ZP_12486367.1| RNA-binding protein [Haemophilus haemolyticus M19107]
gi|417841543|ref|ZP_12487646.1| RNA-binding protein [Haemophilus haemolyticus M19501]
gi|417842013|ref|ZP_12488108.1| RNA-binding protein [Haemophilus haemolyticus M19501]
gi|419839172|ref|ZP_14362590.1| RNA-binding protein, YhbY family [Haemophilus haemolyticus HK386]
gi|341947793|gb|EGT74434.1| RNA-binding protein [Haemophilus haemolyticus M19501]
gi|341948764|gb|EGT75379.1| RNA-binding protein [Haemophilus haemolyticus M19501]
gi|341949698|gb|EGT76300.1| RNA-binding protein [Haemophilus haemolyticus M19107]
gi|341953557|gb|EGT80061.1| RNA-binding protein [Haemophilus haemolyticus M21621]
gi|371758869|gb|EHO47625.1| RNA-binding protein, YhbY family [Haemophilus sp. oral taxon 851
str. F0397]
gi|386909883|gb|EIJ74547.1| RNA-binding protein, YhbY family [Haemophilus haemolyticus HK386]
Length = 99
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+ K+K+ L AH L + ++G +G+T+GV+ L +EL+K+K+
Sbjct: 1 MTTLSTKQKQFLKGLAHHLNPVV---MLGGNGLTEGVLAEIENALNHHELIKVKVAGADR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T +A V IG +++YRPS
Sbjct: 58 ETKQLIIDAIVRETKAAQVQTIGHILVLYRPS 89
>gi|89900794|ref|YP_523265.1| hypothetical protein Rfer_2009 [Rhodoferax ferrireducens T118]
gi|89345531|gb|ABD69734.1| protein of unknown function UPF0044 [Rhodoferax ferrireducens T118]
Length = 157
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+LT ++KE S AH L + +VG G+T V L A+ L+KI++
Sbjct: 5 QLTPAQRKEHRSEAHHLDPVV---MVGGDGLTAAVKKEADAALNAHGLIKIRVFSDDRAT 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMK 122
E + + L + G+A + IG+ ++++RP R K
Sbjct: 62 REAMFQTLADELGAAPIQHIGKLLVLWRPMPEREK 96
>gi|406027116|ref|YP_006725948.1| RNA-binding protein [Lactobacillus buchneri CD034]
gi|405125605|gb|AFS00366.1| RNA-binding protein [Lactobacillus buchneri CD034]
Length = 103
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KLT K+K+ L + A+ + + VGK+G++ + + L+ EL+KI + +
Sbjct: 2 KLTGKQKRFLRANANRMRPIFE---VGKNGLSPVWLEEIQKALDTRELIKINVLQNSAAT 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++D+ +E + VV IG+T+++++PS
Sbjct: 59 VDDIKDYIETKSDVTVVQTIGKTLVLFKPS 88
>gi|317496730|ref|ZP_07955060.1| CRS1/YhbY domain-containing protein [Lachnospiraceae bacterium
5_1_63FAA]
gi|291559285|emb|CBL38085.1| conserved hypothetical protein TIGR00253 [butyrate-producing
bacterium SSC/2]
gi|316895742|gb|EFV17894.1| CRS1/YhbY domain-containing protein [Lachnospiraceae bacterium
5_1_63FAA]
Length = 99
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 39 SYAHSLGKKLK-CQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
+Y SL K+ +GK ++ +V + LEA EL+KI + + C + +++ L E
Sbjct: 7 AYLKSLAMKIDPIYNIGKGSISPELVQGVRDALEARELIKIGVLQNCMDDPKELANVLAE 66
Query: 98 ATGSAVVSQIGQTVIIYRPSLTRMKLE 124
T S VV IG+ +++Y+ S ++E
Sbjct: 67 RTRSQVVQVIGKKIVLYKESKNHKRIE 93
>gi|313891929|ref|ZP_07825530.1| RNA-binding protein, YhbY family [Dialister microaerophilus UPII
345-E]
gi|313119572|gb|EFR42763.1| RNA-binding protein, YhbY family [Dialister microaerophilus UPII
345-E]
Length = 96
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+G+ + V+ S L+A EL+K+KI++ ++ + K L E +V IG+ I
Sbjct: 23 IGKNGIEESVIESIFNALKARELIKVKINQNSVEDINNTAKFLSEKLSCELVQVIGRNCI 82
Query: 113 IYR 115
+++
Sbjct: 83 LFK 85
>gi|304436701|ref|ZP_07396670.1| CRS1/YhbY domain protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304370397|gb|EFM24053.1| CRS1/YhbY domain protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 99
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
++GK GV+ VV S E ++ EL+K+++ + P E D + L E + +V IG+
Sbjct: 26 MIGKEGVSPAVVASAREVIKKRELIKVRVLQNAPEEPTDAITMLAERADANLVQVIGRNG 85
Query: 112 IIYRPSLTRMKLE 124
++++ + + ++E
Sbjct: 86 LLFKRNFDKPRIE 98
>gi|373469011|ref|ZP_09560229.1| RNA-binding protein, YhbY family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371765238|gb|EHO53579.1| RNA-binding protein, YhbY family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 98
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+ +TD V + E +E EL+KI + + C + + + ++ T S VV IG+ ++
Sbjct: 22 IGKASLTDENVAAVAEAMEPRELIKISVLKNCADDPKIIANEIASLTRSEVVQVIGKKIV 81
Query: 113 IYR 115
+Y+
Sbjct: 82 LYK 84
>gi|352085682|ref|ZP_08953273.1| protein of unknown function UPF0044 [Rhodanobacter sp. 2APBS1]
gi|389797998|ref|ZP_10201026.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Rhodanobacter sp. 116-2]
gi|351681623|gb|EHA64747.1| protein of unknown function UPF0044 [Rhodanobacter sp. 2APBS1]
gi|388445893|gb|EIM01946.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Rhodanobacter sp. 116-2]
Length = 98
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ + + L S AH L + L+G G +D VV + L+ +EL+K+K+ E
Sbjct: 3 LSPSQIRYLRSLAHDLSPVV---LLGNKGASDAVVKELGQALDIHELVKVKLSGGDKDER 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + L TG+ + QIG V+++R
Sbjct: 60 QAQIDVLTHGTGAEPIHQIGHVVVLFR 86
>gi|260220959|emb|CBA29046.1| RNA-binding protein HI1333 [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 157
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT ++KE + AH L LVG G+T V L A+ L+K+++
Sbjct: 1 MPQIQLTPAQRKEHRAEAHHLDP---VVLVGGDGLTANVKKEIDAALNAHGLIKVRVFSD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+++ K L E +A + IG+ ++++RP
Sbjct: 58 DRTARDEMFKTLAEELNAAPIQHIGKLLVLWRP 90
>gi|217970149|ref|YP_002355383.1| hypothetical protein Tmz1t_1734 [Thauera sp. MZ1T]
gi|217507476|gb|ACK54487.1| protein of unknown function UPF0044 [Thauera sp. MZ1T]
Length = 150
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ +L+ E+ EL + AH L + V +G+T V+ L+A+EL+K+K+
Sbjct: 1 MTELSPAERSELRARAHHLNPVVT---VAGNGLTPAVLAEIERALQAHELIKVKVQGAER 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ E ++++L A +A V IG ++++R
Sbjct: 58 EQREALMQELCAAVDAAPVQHIGSILVVWR 87
>gi|415724590|ref|ZP_11469968.1| hypothetical protein CGSMWGv00703C2mash_04591 [Gardnerella
vaginalis 00703C2mash]
gi|388062386|gb|EIK85003.1| hypothetical protein CGSMWGv00703C2mash_04591 [Gardnerella
vaginalis 00703C2mash]
Length = 101
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+ K+L + A++L L VGK+ ++D V ET++++EL+K +
Sbjct: 3 LTKKQTKQLRALANTLSPLL---YVGKNDISDAAVKQADETMQSHELMKCAVQDGSGLSA 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ ++L E G+ VV IG +++R S
Sbjct: 60 KEAAQELAEHLGAEVVQVIGNRFVLFRVS 88
>gi|416040908|ref|ZP_11574484.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype a str. H5P1]
gi|444334755|ref|ZP_21150214.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype a str. A160]
gi|347992711|gb|EGY34093.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype a str. H5P1]
gi|443549947|gb|ELT58491.1| 23S rRNA methyltransferase J [Aggregatibacter actinomycetemcomitans
serotype a str. A160]
Length = 78
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
++G +G+T+GV+ +L +EL+K+KI + + ++ + TG+A V IG +
Sbjct: 3 MLGGNGLTEGVLAEIDLSLNHHELIKVKISGSDRETKQLIIDAIVRETGAAAVQTIGHVL 62
Query: 112 IIYRPS 117
++YRPS
Sbjct: 63 VLYRPS 68
>gi|167767399|ref|ZP_02439452.1| hypothetical protein CLOSS21_01918 [Clostridium sp. SS2/1]
gi|429763679|ref|ZP_19296026.1| RNA-binding protein, YhbY family [Anaerostipes hadrus DSM 3319]
gi|167711374|gb|EDS21953.1| RNA-binding protein, YhbY family [Clostridium sp. SS2/1]
gi|429178188|gb|EKY19472.1| RNA-binding protein, YhbY family [Anaerostipes hadrus DSM 3319]
Length = 103
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 39 SYAHSLGKKLK-CQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
+Y SL K+ +GK ++ +V + LEA EL+KI + + C + +++ L E
Sbjct: 11 AYLKSLAMKIDPIYNIGKGSISPELVQGVRDALEARELIKIGVLQNCMDDPKELANVLAE 70
Query: 98 ATGSAVVSQIGQTVIIYRPSLTRMKLE 124
T S VV IG+ +++Y+ S ++E
Sbjct: 71 RTRSQVVQVIGKKIVLYKESKNHKRIE 97
>gi|413918578|gb|AFW58510.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 681
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 19 PSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKI 78
PS + L LP+ E + L + K+LK VGK+G+T+G+V E E++K+
Sbjct: 136 PSAAELALPR---DELRRLQGIGIRVRKRLK---VGKAGITEGIVNGIHERWRNAEVVKL 189
Query: 79 KIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + + LE TG V+ + G T+I+YR
Sbjct: 190 RCEDVWAMNMRRTHEILERKTGGLVIWRSGSTIILYR 226
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 27 PKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPG 86
PKLT +E L AH+L +G+S G+ S I+ E E+ KI + R
Sbjct: 431 PKLTDREMTILRRLAHALPFHYA---LGRSSNLQGLAASMIKLWERCEVAKIALKRDAHN 487
Query: 87 -ELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ E + ++++E TG ++S+ ++++ YR
Sbjct: 488 TDSELITEEVKELTGGTLLSRDKESIVFYR 517
>gi|347534309|ref|YP_004840979.1| RNA-binding protein yqeI [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504365|gb|AEN99047.1| putative RNA-binding protein yqeI [Lactobacillus sanfranciscensis
TMW 1.1304]
Length = 103
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KLT K+K+ L + A+ L VGK+G+ + + + +++ EL+KI I ++ +
Sbjct: 2 KLTGKQKRFLRANANHLRPIFS---VGKNGLNELWLNEVNQAVDSRELVKISIQQSADVD 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+DV + +E + +VV IG+TV+++ S
Sbjct: 59 TDDVKEFIENNSDISVVQTIGKTVLLFNQS 88
>gi|393776733|ref|ZP_10365027.1| RNA-binding protein [Ralstonia sp. PBA]
gi|392716090|gb|EIZ03670.1| RNA-binding protein [Ralstonia sp. PBA]
Length = 166
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P LT ++ EL S AH+L + +VG G+T V+ +L A++L+KI++
Sbjct: 1 MPAQHLTPAQRSELRSRAHALHPLV---MVGSEGLTRAVLLEIDRSLSAHDLIKIRVF-- 55
Query: 84 CPGELEDV----VKQLEEATGSAVVSQIGQTVIIYR 115
G+ DV +++ + +A V IG+ ++I+R
Sbjct: 56 --GDDRDVRIAMYEEICDTLNAAPVQHIGKLLVIWR 89
>gi|385208685|ref|ZP_10035553.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Burkholderia sp. Ch1-1]
gi|385181023|gb|EIF30299.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Burkholderia sp. Ch1-1]
Length = 175
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P K++ ++ EL S AH+L + LVG G+TD V++ L A++L+KI++
Sbjct: 1 MPALKVSSDQRAELRSQAHALKPVV---LVGAEGLTDAVLSEIKVHLGAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKK 127
+ +++ E +A + IG+ ++I++P + ++ K+
Sbjct: 58 EREARLAIYEEICEKLNAAPIQHIGKLLVIWKPEAAQPAVKAKR 101
>gi|160947227|ref|ZP_02094394.1| hypothetical protein PEPMIC_01160 [Parvimonas micra ATCC 33270]
gi|158446361|gb|EDP23356.1| RNA-binding protein, YhbY family [Parvimonas micra ATCC 33270]
Length = 98
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K++ L S AHS+ + +GK GV D + LE EL+KIKI + +++
Sbjct: 5 KQRAFLKSLAHSMEPIMN---IGKYGVNDETIRQLDLALEKRELIKIKILNNNLDDNKEI 61
Query: 92 VKQLEEATGSAVVSQIGQTVIIYR 115
V + + T + V IG +IYR
Sbjct: 62 VDLVLQKTRAEFVQYIGNKFVIYR 85
>gi|438032374|ref|ZP_20855354.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|435327245|gb|ELO98990.1| RNA-binding protein YhbY [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
Length = 75
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
++G +G+T+GV+ + LE +EL+K+KI +V + TG+ V IG+T+
Sbjct: 1 MLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRETKTLIVDAIVRETGACNVQVIGKTL 60
Query: 112 IIYRPS 117
++YRP+
Sbjct: 61 VLYRPT 66
>gi|365096705|ref|ZP_09331148.1| hypothetical protein KYG_20570 [Acidovorax sp. NO-1]
gi|363413731|gb|EHL20923.1| hypothetical protein KYG_20570 [Acidovorax sp. NO-1]
Length = 157
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT E++E + AH L + LVG G+T V L A+ L+K+++
Sbjct: 1 MPQIQLTPAERREQRANAHHLDPVV---LVGGDGLTPAVQKEIDAALNAHGLIKVRVFND 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL--EEKKQQARRVYVRKESK 140
E + +QL +A + IG+ ++++RP + + E++ R V V K SK
Sbjct: 58 DRTARELMYQQLAAELNAAPIQHIGKLLVLWRPQPVKERTVDEDRMPGPRDVKVLKYSK 116
>gi|344942521|ref|ZP_08781808.1| protein of unknown function UPF0044 [Methylobacter tundripaludum
SV96]
gi|344259808|gb|EGW20080.1| protein of unknown function UPF0044 [Methylobacter tundripaludum
SV96]
Length = 88
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 10/86 (11%)
Query: 33 EKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELED-- 90
+KK+L + AHSL + ++G+SG+T V+ L ++EL+K++I E ED
Sbjct: 5 DKKKLRAQAHSLKPVI---MIGQSGLTAAVLAEIELALNSHELIKVRIR----AEREDRK 57
Query: 91 -VVKQLEEATGSAVVSQIGQTVIIYR 115
+ +++ TG+ ++ IGQ +IYR
Sbjct: 58 LISEKICADTGAELIQSIGQIAVIYR 83
>gi|227497473|ref|ZP_03927702.1| RNA-binding protein [Actinomyces urogenitalis DSM 15434]
gi|226833047|gb|EEH65430.1| RNA-binding protein [Actinomyces urogenitalis DSM 15434]
Length = 101
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+ K+L S H L ++ ++GK+G+T G+V T++ EL+K + + P E
Sbjct: 3 LTKKQVKQLRSLGHHLDPQV---MIGKNGLTPGLVAQAEATIDQRELIKCSVLESSPVEA 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ L + VV IG I+YR
Sbjct: 60 KEAAGALAGELEAEVVQVIGGRFILYR 86
>gi|82701615|ref|YP_411181.1| hypothetical protein Nmul_A0481 [Nitrosospira multiformis ATCC
25196]
gi|82409680|gb|ABB73789.1| Protein of unknown function UPF0044 [Nitrosospira multiformis ATCC
25196]
Length = 95
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT ++ L + AH+L + +G +G++D VV + L+++EL+KIK+ + E+
Sbjct: 4 LTPDFRRGLKARAHALKPVV---WIGAAGLSDNVVNELDQRLKSHELIKIKV-ASADWEI 59
Query: 89 EDVVKQLEEATG---SAVVSQIGQTVIIYRP 116
+ + LE+ G +A V IG+ ++IYRP
Sbjct: 60 RNAL--LEKICGRLNAAPVQHIGKMLVIYRP 88
>gi|408418224|ref|YP_006759638.1| hypothetical protein TOL2_C07660 [Desulfobacula toluolica Tol2]
gi|405105437|emb|CCK78934.1| conserved uncharacterized RNA-binding protein [Desulfobacula
toluolica Tol2]
Length = 101
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 33 EKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELED-V 91
+KK L AH+L +G+ G+T ++ + LEA EL+K+K + + ++ +
Sbjct: 8 QKKYLRGLAHNLNP---SAFIGQKGITQTLIAEIDKALEATELIKVKFNDFKEKDQKNSL 64
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ +AT S + IG I+YR +
Sbjct: 65 INEISKATQSHIAGMIGHVAILYRQN 90
>gi|329120972|ref|ZP_08249603.1| RNA-binding protein YhbY [Dialister micraerophilus DSM 19965]
gi|327471134|gb|EGF16588.1| RNA-binding protein YhbY [Dialister micraerophilus DSM 19965]
Length = 104
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+G+ + V+ S L+A EL+K+KI++ ++ + K L E +V IG+ I
Sbjct: 31 IGKNGIEESVIESIFNALKARELIKVKINQNSVEDINNTAKFLSEKLSCELVQVIGRNCI 90
Query: 113 IYR 115
++
Sbjct: 91 LFN 93
>gi|153814873|ref|ZP_01967541.1| hypothetical protein RUMTOR_01088 [Ruminococcus torques ATCC 27756]
gi|145847904|gb|EDK24822.1| RNA-binding protein, YhbY family [Ruminococcus torques ATCC 27756]
Length = 125
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
+Y SL K++ +GKS ++ G+ + E LEA EL+KI + C + ++ + +
Sbjct: 35 AYLKSLAMKIEPIFQIGKSSMSPGLTEAVSEALEARELIKISVLNNCGDDPRELAEIIAG 94
Query: 98 ATGSAVVSQIGQTVIIYR 115
T S VV IG+ +++YR
Sbjct: 95 RTRSQVVQVIGKKIVLYR 112
>gi|221201967|ref|ZP_03575003.1| CRS1 [Burkholderia multivorans CGD2M]
gi|221204903|ref|ZP_03577920.1| CRS1 [Burkholderia multivorans CGD2]
gi|221213880|ref|ZP_03586853.1| CRS1 [Burkholderia multivorans CGD1]
gi|421470810|ref|ZP_15919160.1| CRS1/YhbY domain protein [Burkholderia multivorans ATCC BAA-247]
gi|221166057|gb|EED98530.1| CRS1 [Burkholderia multivorans CGD1]
gi|221175760|gb|EEE08190.1| CRS1 [Burkholderia multivorans CGD2]
gi|221178050|gb|EEE10461.1| CRS1 [Burkholderia multivorans CGD2M]
gi|400226879|gb|EJO56916.1| CRS1/YhbY domain protein [Burkholderia multivorans ATCC BAA-247]
Length = 176
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L+A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLKEIKVHLDAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + ++ + +A + IG+ ++I++P
Sbjct: 58 ERDERVAIYDEICDRLNAAPIQHIGKLLVIWKP 90
>gi|335044803|ref|ZP_08537826.1| RNA-binding protein, YhbY family [Oribacterium sp. oral taxon 108
str. F0425]
gi|363897273|ref|ZP_09323812.1| hypothetical protein HMPREF9624_00374 [Oribacterium sp. ACB7]
gi|333758589|gb|EGL36146.1| RNA-binding protein, YhbY family [Oribacterium sp. oral taxon 108
str. F0425]
gi|361958770|gb|EHL12067.1| hypothetical protein HMPREF9624_00374 [Oribacterium sp. ACB7]
Length = 99
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 39/65 (60%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
VGK+ +T S E +E +E++KI + + C +L ++ + E + + +V IG+ ++
Sbjct: 27 VGKNALTPEFTRSVEEYMEKHEIMKINVLKNCDEDLHELGNTIAERSNTELVQIIGRKIV 86
Query: 113 IYRPS 117
+Y+P+
Sbjct: 87 LYKPA 91
>gi|238916944|ref|YP_002930461.1| RNA-binding protein containing KH domain [Eubacterium eligens ATCC
27750]
gi|238872304|gb|ACR72014.1| putative RNA-binding protein containing KH domain [Eubacterium
eligens ATCC 27750]
Length = 107
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L A ++ + GK+ +T + E LEA EL+KI + C +
Sbjct: 13 MTSKQRAYLKGLAMTMDPIFQ---FGKNSLTPENTAAIAEALEARELIKISVLNNCADDP 69
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + + E T S VV IG+ +++Y+ S
Sbjct: 70 REIAQMVAERTRSQVVQVIGKKIVLYKES 98
>gi|331701564|ref|YP_004398523.1| RNA-binding, CRM domain-containing protein [Lactobacillus buchneri
NRRL B-30929]
gi|329128907|gb|AEB73460.1| RNA-binding, CRM domain protein [Lactobacillus buchneri NRRL
B-30929]
Length = 103
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KLT K+K+ L + A+ + + VGK+G++ + + L+ EL+KI + +
Sbjct: 2 KLTGKQKRFLRANANRMRPIFE---VGKNGLSPVWLEEIQKALDTRELIKINVLQNSTAT 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++D+ +E + VV IG+T+++++PS
Sbjct: 59 VDDIKDYIETKSDVTVVQTIGKTLVLFKPS 88
>gi|343520150|ref|ZP_08757119.1| RNA-binding protein, YhbY family [Parvimonas sp. oral taxon 393
str. F0440]
gi|343397108|gb|EGV09642.1| RNA-binding protein, YhbY family [Parvimonas sp. oral taxon 393
str. F0440]
Length = 97
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
K++ L S AH++ + +GK GV D + LE EL+KIKI + +++
Sbjct: 5 KQRAFLKSLAHNMEPVMN---IGKYGVNDETIRQLDLALEKRELIKIKILNNNLDDNKEI 61
Query: 92 VKQLEEATGSAVVSQIGQTVIIYR 115
V + + T + V IG +IYR
Sbjct: 62 VDLVLQKTRAEFVQHIGNKFVIYR 85
>gi|18311108|ref|NP_563042.1| RNA-binding protein [Clostridium perfringens str. 13]
gi|110798873|ref|YP_696804.1| RNA-binding protein [Clostridium perfringens ATCC 13124]
gi|110803303|ref|YP_699402.1| putative RNA-binding protein [Clostridium perfringens SM101]
gi|168205933|ref|ZP_02631938.1| putative RNA-binding protein [Clostridium perfringens E str.
JGS1987]
gi|168208828|ref|ZP_02634453.1| putative RNA-binding protein [Clostridium perfringens B str. ATCC
3626]
gi|168212837|ref|ZP_02638462.1| putative RNA-binding protein [Clostridium perfringens CPE str.
F4969]
gi|168215753|ref|ZP_02641378.1| putative RNA-binding protein [Clostridium perfringens NCTC 8239]
gi|169346812|ref|ZP_02865763.1| putative RNA-binding protein [Clostridium perfringens C str.
JGS1495]
gi|182624014|ref|ZP_02951802.1| putative RNA-binding protein [Clostridium perfringens D str.
JGS1721]
gi|422346791|ref|ZP_16427705.1| hypothetical protein HMPREF9476_01778 [Clostridium perfringens
WAL-14572]
gi|422875040|ref|ZP_16921525.1| putative RNA-binding protein [Clostridium perfringens F262]
gi|18145791|dbj|BAB81832.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110673520|gb|ABG82507.1| putative RNA-binding protein [Clostridium perfringens ATCC 13124]
gi|110683804|gb|ABG87174.1| putative RNA-binding protein [Clostridium perfringens SM101]
gi|169297094|gb|EDS79216.1| putative RNA-binding protein [Clostridium perfringens C str.
JGS1495]
gi|170662601|gb|EDT15284.1| putative RNA-binding protein [Clostridium perfringens E str.
JGS1987]
gi|170713172|gb|EDT25354.1| putative RNA-binding protein [Clostridium perfringens B str. ATCC
3626]
gi|170715510|gb|EDT27692.1| putative RNA-binding protein [Clostridium perfringens CPE str.
F4969]
gi|177910907|gb|EDT73261.1| putative RNA-binding protein [Clostridium perfringens D str.
JGS1721]
gi|182382431|gb|EDT79910.1| putative RNA-binding protein [Clostridium perfringens NCTC 8239]
gi|373226336|gb|EHP48663.1| hypothetical protein HMPREF9476_01778 [Clostridium perfringens
WAL-14572]
gi|380304035|gb|EIA16328.1| putative RNA-binding protein [Clostridium perfringens F262]
Length = 100
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
+Y LG KL +GK+G+ D + + LEA E+LKI + E + + E
Sbjct: 8 AYLRGLGAKLTPIFQIGKNGIEDNFLKQVDDALEAREILKINVLENSGLETREASNFICE 67
Query: 98 ATGSAVVSQIGQTVIIYRPSLTRMKLE 124
G V IG +++YR S K+E
Sbjct: 68 RLGCEGVQSIGNKIVLYRASKNNPKIE 94
>gi|394989169|ref|ZP_10382003.1| hypothetical protein SCD_01588 [Sulfuricella denitrificans skB26]
gi|393791588|dbj|GAB71642.1| hypothetical protein SCD_01588 [Sulfuricella denitrificans skB26]
Length = 100
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT ++++ L + AH+L + +G +G+T+ V+ ++ ++EL+K+K H
Sbjct: 5 LTSEQRRFLRAQAHNLNPVVT---IGDAGLTEAVMKELERSIASHELIKVKSHSRDKATR 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + ++ E +A + IG+ +I+Y+P+
Sbjct: 62 DSQLAEICETLNAASIQHIGKILIVYKPA 90
>gi|373464478|ref|ZP_09556016.1| RNA-binding protein, YhbY family [Lactobacillus kisonensis F0435]
gi|371762399|gb|EHO50930.1| RNA-binding protein, YhbY family [Lactobacillus kisonensis F0435]
Length = 103
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ L + A+ + + VGK+G++ + ++L++ EL+K+ + +
Sbjct: 2 NLTGKQKRFLRANANRMRPIFE---VGKNGLSQIWLDEIQKSLDSRELIKVNVLQNAAAS 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
L D+ + +E + VV IG+T+++++PS
Sbjct: 59 LADIKEYIETKSNITVVQVIGKTLVLFKPS 88
>gi|303256869|ref|ZP_07342883.1| RNA-binding protein YhbY [Burkholderiales bacterium 1_1_47]
gi|302860360|gb|EFL83437.1| RNA-binding protein YhbY [Burkholderiales bacterium 1_1_47]
Length = 179
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 37 LASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLE 96
L + AH L L+G +G+T+ V+ L A+ L+K+KI E + ++L
Sbjct: 14 LQAKAHHLDP---VVLLGGNGLTEAVIKEVDRALTAHGLIKVKIPSDDREERTAIFEELA 70
Query: 97 EATGSAVVSQIGQTVIIYRP 116
+ G+A ++QIG+ ++++RP
Sbjct: 71 DKLGAAKITQIGKLLVLFRP 90
>gi|161525195|ref|YP_001580207.1| hypothetical protein Bmul_2025 [Burkholderia multivorans ATCC
17616]
gi|189350066|ref|YP_001945694.1| putative RNA-binding protein containing KH domain [Burkholderia
multivorans ATCC 17616]
gi|160342624|gb|ABX15710.1| protein of unknown function UPF0044 [Burkholderia multivorans ATCC
17616]
gi|189334088|dbj|BAG43158.1| putative RNA-binding protein containing KH domain [Burkholderia
multivorans ATCC 17616]
Length = 176
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L+A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLKEIKVHLDAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + ++ + +A + IG+ ++I++P
Sbjct: 58 ERDERVAIYDEICDRLNAAPIQHIGKLLVIWKP 90
>gi|92115198|ref|YP_575126.1| hypothetical protein Csal_3083 [Chromohalobacter salexigens DSM
3043]
gi|91798288|gb|ABE60427.1| protein of unknown function UPF0044 [Chromohalobacter salexigens
DSM 3043]
Length = 108
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ +KK S H L + V ++G+T+GV+ LE +EL+K+K+ G+
Sbjct: 3 LSQAQKKAFRSIGHHLNPVVT---VSENGLTEGVMAELARALEDHELVKVKL---AIGDR 56
Query: 89 E---DVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E V +L EA+ S +V IG+ V++YR +
Sbjct: 57 EARNAVTAELAEASRSELVQTIGKVVLLYRHN 88
>gi|121998551|ref|YP_001003338.1| hypothetical protein Hhal_1772 [Halorhodospira halophila SL1]
gi|121589956|gb|ABM62536.1| protein of unknown function UPF0044 [Halorhodospira halophila SL1]
Length = 118
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 44 LGKKLK-CQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSA 102
LG LK L G +G+++GV+ L+ +EL+K+K+ E + + ++ E TG+
Sbjct: 36 LGHALKPVVLTGAAGLSEGVLEEIERALDDHELIKVKLAGASKEERQAMTTEIAEQTGAV 95
Query: 103 VVSQIGQTVIIYR 115
VV IG+ V++Y+
Sbjct: 96 VVQTIGRIVLLYQ 108
>gi|227890566|ref|ZP_04008371.1| RNA-binding protein [Lactobacillus salivarius ATCC 11741]
gi|417788025|ref|ZP_12435708.1| RNA binding protein [Lactobacillus salivarius NIAS840]
gi|417810593|ref|ZP_12457272.1| RNA-binding protein [Lactobacillus salivarius GJ-24]
gi|227867504|gb|EEJ74925.1| RNA-binding protein [Lactobacillus salivarius ATCC 11741]
gi|334308202|gb|EGL99188.1| RNA binding protein [Lactobacillus salivarius NIAS840]
gi|335349389|gb|EGM50889.1| RNA-binding protein [Lactobacillus salivarius GJ-24]
Length = 103
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL K+K+ L S AH L + +GK G+++ + ++ L+ ELLK+ I + E
Sbjct: 2 KLRGKQKRYLRSEAHHLKPIFQ---IGKDGLSEVWLDEVLKALDKRELLKVNILQNSLVE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+E+V + +E + + V+ IG +++++ S
Sbjct: 59 VEEVKEFIENNSDAQVIQTIGNVLVLFKKS 88
>gi|421480869|ref|ZP_15928462.1| CRS1/YhbY domain protein [Burkholderia multivorans CF2]
gi|400220310|gb|EJO50856.1| CRS1/YhbY domain protein [Burkholderia multivorans CF2]
Length = 176
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L+A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLKEIKVHLDAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + ++ + +A + IG+ ++I++P
Sbjct: 58 ERDERVAIYDEICDRLNAAPIQHIGKLLVIWKP 90
>gi|304387889|ref|ZP_07370063.1| CRS1/YhbY domain protein [Neisseria meningitidis ATCC 13091]
gi|304338154|gb|EFM04290.1| CRS1/YhbY domain protein [Neisseria meningitidis ATCC 13091]
Length = 94
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL +E EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLNTQEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + V IG+ ++++R ++
Sbjct: 62 RIEICTALCEAVDAQPVQHIGKLLVLWRKNI 92
>gi|149921491|ref|ZP_01909943.1| hypothetical protein PPSIR1_30801 [Plesiocystis pacifica SIR-1]
gi|149817694|gb|EDM77161.1| hypothetical protein PPSIR1_30801 [Plesiocystis pacifica SIR-1]
Length = 104
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT-CPG 86
+L+ K++K L+ AHSL ++ VG +G+T+ V + E L +EL+K+K+ +
Sbjct: 4 ELSPKQRKFLSGMAHSLSPVVQ---VGAAGLTESVFAAVSEALRRHELIKVKLPKVDSAA 60
Query: 87 ELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + L E + + V+ +G+ +IY+P
Sbjct: 61 ERHALYDTLIEGSEALRVALLGRVAVIYKP 90
>gi|404369911|ref|ZP_10975238.1| YhbY family putative RNA-binding protein [Clostridium sp.
7_2_43FAA]
gi|226913961|gb|EEH99162.1| YhbY family putative RNA-binding protein [Clostridium sp.
7_2_43FAA]
Length = 98
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L A++L + VGK+GV + +T E LEA EL+KIK+
Sbjct: 2 ITGKQRAYLRGLANNLDPIFQ---VGKNGVEEAFLTQLTEALEARELIKIKVLENSGLGA 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
+V + E G + IG +++Y+ S + K+E
Sbjct: 59 REVSNYICEKIGCEGIQAIGSKIVLYKKSSKKPKIE 94
>gi|421554563|ref|ZP_16000504.1| RNA-binding protein YhbY [Neisseria meningitidis 98008]
gi|402332523|gb|EJU67848.1| RNA-binding protein YhbY [Neisseria meningitidis 98008]
Length = 94
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL KE EL AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 5 KLNTKEILELKVRAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + V IG+ ++++R ++
Sbjct: 62 RIEICTALCEAVDAQPVQHIGKLLVLWRKNI 92
>gi|295109989|emb|CBL23942.1| conserved hypothetical protein TIGR00253 [Ruminococcus obeum
A2-162]
Length = 96
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
+Y SL K+ + +GK VT S E L A EL+KI + + C + + + L E
Sbjct: 7 AYLKSLAMKMDPIMQLGKGSVTPENTASVDEALAARELIKISVLQNCLDDPRQMAEVLAE 66
Query: 98 ATGSAVVSQIGQTVIIYR 115
T S VV IG+ +++YR
Sbjct: 67 RTHSEVVQVIGRKIVLYR 84
>gi|83644092|ref|YP_432527.1| RNA-binding protein [Hahella chejuensis KCTC 2396]
gi|83632135|gb|ABC28102.1| predicted RNA-binding protein containing KH domain, possibly
ribosomal protein [Hahella chejuensis KCTC 2396]
Length = 107
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L ++++K+ + AH L + + +G+T+GV++ L +EL+KIKI E
Sbjct: 3 LPIEQRKQYRAIAHHLKPIVT---IAGAGITEGVISELERALNDHELIKIKIAVGEKEER 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
V+K+L E + S +V IG+T I+ R
Sbjct: 60 AGVIKELCEMSRSELVQVIGRTAILLR 86
>gi|108761592|ref|YP_629365.1| hypothetical protein MXAN_1105 [Myxococcus xanthus DK 1622]
gi|108465472|gb|ABF90657.1| conserved hypothetical protein TIGR00253 [Myxococcus xanthus DK
1622]
Length = 96
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+++ L + H L + +VG++GVT+GV+ + + L+ +EL+K+KI+ P
Sbjct: 3 LTGKQRRHLRALGHHLEPVV---IVGQAGVTEGVIAAIEQALQDHELIKVKINE-GPETR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ ++ E + + +G+T ++++
Sbjct: 59 QEAAARIAEGAQAELAQLLGRTALVFK 85
>gi|291613527|ref|YP_003523684.1| hypothetical protein Slit_1059 [Sideroxydans lithotrophicus ES-1]
gi|291583639|gb|ADE11297.1| protein of unknown function UPF0044 [Sideroxydans lithotrophicus
ES-1]
Length = 115
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+V ++++L + AH+L + ++G +G+T V+ +L++++L+KI++
Sbjct: 3 NLSVSQRRDLKARAHALHPVV---IIGNAGLTPAVLGEIERSLKSHDLMKIRVMNDDREV 59
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRVYVRKE 138
+++++ E + V IG+ +++YRP + K++Q + V +K+
Sbjct: 60 RATMLQEICEQLKAGPVQHIGKILVVYRPLEIPIAKPPKRRQGKTVLSKKQ 110
>gi|124266459|ref|YP_001020463.1| hypothetical protein Mpe_A1266 [Methylibium petroleiphilum PM1]
gi|124259234|gb|ABM94228.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 156
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT E+K + AH L + ++G G+T V L+A+ L+K+++
Sbjct: 1 MPAIQLTPAERKAHRADAHHLDPVV---MIGGEGLTPAVTKEADAALKAHGLIKVRVFSD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQA--RRVYVRKESK 140
E + L E G+A V IG+ ++++RP + K ++ +QA R V + K SK
Sbjct: 58 ERETRETIFATLCEQLGAAPVQHIGKLLVLWRPVEPKEKTPDEHRQAGPRVVKILKFSK 116
>gi|59711084|ref|YP_203860.1| RNA-binding protein [Vibrio fischeri ES114]
gi|197335798|ref|YP_002155233.1| hypothetical protein VFMJ11_0477 [Vibrio fischeri MJ11]
gi|423685190|ref|ZP_17659998.1| hypothetical protein VFSR5_0464 [Vibrio fischeri SR5]
gi|59479185|gb|AAW84972.1| predicted RNA-binding protein [Vibrio fischeri ES114]
gi|197317288|gb|ACH66735.1| conserved hypothetical protein [Vibrio fischeri MJ11]
gi|371495691|gb|EHN71286.1| hypothetical protein VFSR5_0464 [Vibrio fischeri SR5]
Length = 98
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH+L L+G +G+T+ VV L +EL+K+K+
Sbjct: 2 NLSTKQKQYLKGLAHNLKP---VVLMGANGLTEAVVAEIEIALNHHELIKVKVASEDRDT 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
+ +V+ + T + V IG+T+++YRPS R
Sbjct: 59 KQLIVEAIIRETEAEKVQVIGKTLVLYRPSEDR 91
>gi|389783579|ref|ZP_10194901.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Rhodanobacter spathiphylli B39]
gi|388434546|gb|EIL91483.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Rhodanobacter spathiphylli B39]
Length = 98
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT + + L S AH L + L+G G T+ VV + L+ +EL+KIK+ E
Sbjct: 3 LTSSQIRYLRSLAHDLSAVV---LLGNKGATEAVVKELNQALDIHELVKIKLSGGDKEER 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL 123
+ + L TG+ + QIG V+++R ++ K+
Sbjct: 60 QAQIDVLTGGTGAEQIQQIGHVVVLFRRNVDEPKI 94
>gi|119774089|ref|YP_926829.1| RNA-binding protein [Shewanella amazonensis SB2B]
gi|119766589|gb|ABL99159.1| putative RNA-binding protein containing KH domain [Shewanella
amazonensis SB2B]
Length = 99
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ L AH L L+G +G+T+GV+ L +EL+K+K+ + E
Sbjct: 2 NLTTKQKQHLKGLAHDLKP---VVLLGANGLTEGVLAEIDGALSHHELIKVKV-ASSDRE 57
Query: 88 LED-VVKQLEEATGSAVVSQIGQTVIIYRPS 117
+++ +V + T +A V IG +++YR S
Sbjct: 58 MKNAIVDAIVRETQAAKVQLIGHVLVLYRQS 88
>gi|153853134|ref|ZP_01994543.1| hypothetical protein DORLON_00528 [Dorea longicatena DSM 13814]
gi|149753920|gb|EDM63851.1| RNA-binding protein, YhbY family [Dorea longicatena DSM 13814]
Length = 97
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L A +L + +GK+ +T V + E L+A EL+KI + + C +
Sbjct: 1 MTTKQRAYLKGLAMNLDPIFQ---IGKNSMTPEVTKAIQEALDARELIKISVLKNCADDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + + E T S VV IG+ +++Y+
Sbjct: 58 RALAEVIAERTRSQVVQVIGKKIVLYK 84
>gi|149909288|ref|ZP_01897944.1| hypothetical protein PE36_05708 [Moritella sp. PE36]
gi|149807605|gb|EDM67553.1| hypothetical protein PE36_05708 [Moritella sp. PE36]
Length = 98
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AHSL + L+G+ G+T+GV+ L +EL+KIK+ +
Sbjct: 3 LSNKQKQHLKGLAHSLKPVI---LLGQHGLTEGVMAEIEVALAHHELIKIKVASADRDQK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V+ + + + V IG T++IYR S
Sbjct: 60 ALVMDTIVKEANAEKVQSIGHTLVIYRTS 88
>gi|167587474|ref|ZP_02379862.1| hypothetical protein BuboB_19172 [Burkholderia ubonensis Bu]
Length = 175
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L+A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSEAHALKPVV---LIGAEGLTDAVLKEIKVHLDAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + ++ + +A + IG+ ++I++P
Sbjct: 58 ERDERIAIYDEICDRLNAAPIQHIGKLLVIWKP 90
>gi|366085738|ref|ZP_09452223.1| RNA-binding protein [Lactobacillus zeae KCTC 3804]
Length = 103
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S A + ++ VGK+G+ D V + LE EL+KI + T
Sbjct: 2 LTGKQKRYLRSLAMTTKPLIQ---VGKNGLGDAFVAGVKDALETRELVKISLLPTADDTP 58
Query: 89 EDVVKQLEEA-TGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARRV 133
+V L+ A TG V IG+TVI+Y+ E K + RR+
Sbjct: 59 REVADTLQAAITGLEVAQIIGRTVIVYK--------EATKTEHRRI 96
>gi|238926179|ref|ZP_04657939.1| RNA binding protein [Selenomonas flueggei ATCC 43531]
gi|238885859|gb|EEQ49497.1| RNA binding protein [Selenomonas flueggei ATCC 43531]
Length = 81
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
++GK GV+ VV S E ++ EL+K+++ + P E D + L E + +V IG+
Sbjct: 8 MIGKEGVSPAVVASAREVIKKRELIKVRVLQNAPEEPADAITMLAERADANLVQVIGRNG 67
Query: 112 IIYRPSLTRMKLE 124
++++ + + ++E
Sbjct: 68 LLFKRNFDKPRIE 80
>gi|114321127|ref|YP_742810.1| hypothetical protein Mlg_1978 [Alkalilimnicola ehrlichii MLHE-1]
gi|114227521|gb|ABI57320.1| protein of unknown function UPF0044 [Alkalilimnicola ehrlichii
MLHE-1]
Length = 100
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+L +++ L AH L ++ G +G+T+ V+ LE++EL+K+K+ +
Sbjct: 2 RLNESQRRHLRRLAHDLKPVVR---TGNAGLTEAVMAEIELALESHELIKVKLVGLERAD 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++Q+ TG+ +V ++GQ ++YR +
Sbjct: 59 RQPTIEQICVETGAELVQKVGQVAVLYRAN 88
>gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis]
Length = 1009
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
VGK+G+T+G+V E +E++KI C ++ LE TG VV + G ++
Sbjct: 179 VGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRTHDLLERKTGGLVVWRAGSKIV 238
Query: 113 IYR 115
+YR
Sbjct: 239 LYR 241
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPG-ELEDVVKQLEEATGSAVVSQIGQTV 111
VG+S + GV + + L + + G +++VV QLE+ATG +VSQ V
Sbjct: 884 VGRSNIVTGVAKTIKAHFKKYPLAIVNVKGRAKGTSVQEVVFQLEQATGGVLVSQEPSKV 943
Query: 112 IIYR 115
I+YR
Sbjct: 944 ILYR 947
>gi|310287060|ref|YP_003938318.1| CRS1 / YhbY (CRM) domain [Bifidobacterium bifidum S17]
gi|311063927|ref|YP_003970652.1| hypothetical protein BBPR_0516 [Bifidobacterium bifidum PRL2010]
gi|421735892|ref|ZP_16174766.1| hypothetical protein B217_02515 [Bifidobacterium bifidum IPLA
20015]
gi|309250996|gb|ADO52744.1| Conserved hypothetical protein with CRS1 / YhbY (CRM) domain
[Bifidobacterium bifidum S17]
gi|310866246|gb|ADP35615.1| Hypothetical RNA binding protein [Bifidobacterium bifidum PRL2010]
gi|407296814|gb|EKF16322.1| hypothetical protein B217_02515 [Bifidobacterium bifidum IPLA
20015]
Length = 101
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+ K+L + A+ L L +GK+ +TD V ET++++ELLK+ +
Sbjct: 3 LSKKQVKQLRAMANQLNPLL---YIGKNDLTDAAVKQASETMDSHELLKVAVQDGSGLTA 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ +L G+ VV IG ++YR S
Sbjct: 60 KEAADKLAGQIGAQVVQVIGNRFVLYRKS 88
>gi|392542073|ref|ZP_10289210.1| RNA binding protein [Pseudoalteromonas piscicida JCM 20779]
gi|409200327|ref|ZP_11228530.1| RNA binding protein [Pseudoalteromonas flavipulchra JG1]
Length = 98
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 17/108 (15%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AHSL L+G +G+T+GV+ + L +EL+K+K+ P
Sbjct: 3 LSNKQKQFLKGLAHSLNP---VVLLGANGLTEGVMAEIEQNLNIHELIKVKV----PTND 55
Query: 89 EDVVKQLEEA----TGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
+ K + EA T + V IG +++YR S E+KK Q R
Sbjct: 56 RETKKLIFEAIVRETNAHKVQTIGHIIVLYRQS------EDKKIQLPR 97
>gi|222056362|ref|YP_002538724.1| hypothetical protein Geob_3280 [Geobacter daltonii FRC-32]
gi|221565651|gb|ACM21623.1| protein of unknown function UPF0044 [Geobacter daltonii FRC-32]
Length = 106
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ + LG LK + +GK + + ++ +E L A+EL+K+KI +C +
Sbjct: 2 LTGKQKR----FLRGLGHPLKAVITIGKGEINESLIRETMEALAAHELIKVKILESCLLD 57
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ +L + G+ V +G+T ++Y+
Sbjct: 58 RYEAAAELAGSCGAEVAQVLGRTFLLYK 85
>gi|431930875|ref|YP_007243921.1| RNA-binding protein [Thioflavicoccus mobilis 8321]
gi|431829178|gb|AGA90291.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Thioflavicoccus mobilis 8321]
Length = 104
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T ++++ L H L + +VG+ G++D V+ L+ +EL+K+KI E
Sbjct: 7 ITERQRRWLKRQVHHLKPVV---IVGQHGLSDPVLNEIGLALDHHELIKVKIAAGDRDER 63
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + ++ E T A++ +IG T YR
Sbjct: 64 DALASEIAERTAGALIDRIGHTAAFYR 90
>gi|78065908|ref|YP_368677.1| hypothetical protein Bcep18194_A4437 [Burkholderia sp. 383]
gi|77966653|gb|ABB08033.1| protein of unknown function UPF0044 [Burkholderia sp. 383]
Length = 175
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L+A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLKEIKVHLDAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + ++ + +A + IG+ ++I++P
Sbjct: 58 ERDERIAIYDEICDRLSAAPIQHIGKLLVIWKP 90
>gi|334127924|ref|ZP_08501826.1| CRS1/YhbY domain protein [Centipeda periodontii DSM 2778]
gi|333388645|gb|EGK59819.1| CRS1/YhbY domain protein [Centipeda periodontii DSM 2778]
Length = 99
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
++GK GVT VV S E ++ EL+K+++ + P + D + L E + +V IG+
Sbjct: 26 MIGKEGVTPTVVASAREAIKKRELIKVRVLQNAPEDPADAITVLAERADANLVQIIGRNG 85
Query: 112 IIYRPSLTRMKLE 124
+++R + + ++E
Sbjct: 86 LLFRRNFEKPRIE 98
>gi|167836217|ref|ZP_02463100.1| CRS1 / YhbY domain family protein [Burkholderia thailandensis
MSMB43]
Length = 112
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSEAHALKPVV---LIGAEGLTDAVLAEIEVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
E + ++ + +A + IG+ ++I++P + E Q+ RR
Sbjct: 58 ERDERVAIYDEICDRLNAAPIQHIGKLLVIWKPE----QAEAAPQRGRR 102
>gi|90022367|ref|YP_528194.1| RNA-binding protein [Saccharophagus degradans 2-40]
gi|89951967|gb|ABD81982.1| protein of unknown function UPF0044 [Saccharophagus degradans 2-40]
Length = 123
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ KK+ S AH+L + + +G+ DGV L+ +EL+KIKI
Sbjct: 26 LSTDRKKQFRSIAHALNPIVT---IAGNGLNDGVRAELERALDDHELIKIKIAIADREIR 82
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++V+ ++ + + +V QIG+ +IYR S
Sbjct: 83 KEVITEMCTSCRAEMVQQIGKVAVIYRES 111
>gi|339481025|ref|ZP_08656684.1| RNA-binding protein [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 103
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S A++L VGK+G+T + + + EL+KI + + +
Sbjct: 3 LTGKQKRFLRSQANTLSPIFS---VGKNGLTTTWLEELVMAIAKRELIKISLQQGSEETV 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQ 129
+ V +E + +VV IG+T+++Y P+ +EEK Q+
Sbjct: 60 DSVADYIETHSDISVVQTIGRTIVLYLPA-----VEEKYQK 95
>gi|406596689|ref|YP_006747819.1| RNA binding protein [Alteromonas macleodii ATCC 27126]
gi|407683646|ref|YP_006798820.1| RNA binding protein [Alteromonas macleodii str. 'English Channel
673']
gi|407687630|ref|YP_006802803.1| RNA binding protein [Alteromonas macleodii str. 'Balearic Sea
AD45']
gi|407699954|ref|YP_006824741.1| RNA binding protein [Alteromonas macleodii str. 'Black Sea 11']
gi|406374010|gb|AFS37265.1| RNA binding protein [Alteromonas macleodii ATCC 27126]
gi|407245257|gb|AFT74443.1| RNA binding protein [Alteromonas macleodii str. 'English Channel
673']
gi|407249101|gb|AFT78286.1| RNA binding protein [Alteromonas macleodii str. 'Black Sea 11']
gi|407291010|gb|AFT95322.1| RNA binding protein [Alteromonas macleodii str. 'Balearic Sea
AD45']
Length = 97
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ K+K+ L AH L K QL G +G+T+GVV L +EL+K+K+ E
Sbjct: 2 KLSNKQKQFLKGLAHPL--KPVVQL-GGNGLTEGVVAEIDNALSHHELIKVKVPTDDREE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + T S + IG T+IIYR S
Sbjct: 59 KALIMDAIVRETNSVKLQVIGHTLIIYRQS 88
>gi|332530813|ref|ZP_08406739.1| hypothetical protein HGR_12732 [Hylemonella gracilis ATCC 19624]
gi|332039725|gb|EGI76125.1| hypothetical protein HGR_12732 [Hylemonella gracilis ATCC 19624]
Length = 158
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
+LTV ++KE + AH L ++G G+T V L+A+ L+K+++ E
Sbjct: 5 QLTVAQRKEHRAEAHHLDP---VVMIGGDGLTPAVKKEVDAALKAHGLIKVRVFSDERVE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYR--PSLTRMKLEEKKQQARRVYVRKESK 140
E ++ L + +A + IG+ ++++R P R E+++ R V V K SK
Sbjct: 62 RETILTTLADELNAAPIQHIGKLLVLWRPIPEKERTIDEDRRPGPRDVKVLKFSK 116
>gi|363899251|ref|ZP_09325761.1| hypothetical protein HMPREF9625_00421 [Oribacterium sp. ACB1]
gi|395209463|ref|ZP_10398557.1| putative RNA-binding protein, YhbY family [Oribacterium sp. ACB8]
gi|361959088|gb|EHL12384.1| hypothetical protein HMPREF9625_00421 [Oribacterium sp. ACB1]
gi|394705094|gb|EJF12623.1| putative RNA-binding protein, YhbY family [Oribacterium sp. ACB8]
Length = 99
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 39/65 (60%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+ +T S E +E +E++KI + + C +L ++ + E + + +V IG+ ++
Sbjct: 27 IGKNALTPEFTHSVEEYMEKHEIMKINVLKNCDEDLRELGNTIAERSNTELVQIIGRKIV 86
Query: 113 IYRPS 117
+Y+P+
Sbjct: 87 LYKPA 91
>gi|323526826|ref|YP_004228979.1| hypothetical protein BC1001_2503 [Burkholderia sp. CCGE1001]
gi|323383828|gb|ADX55919.1| protein of unknown function UPF0044 [Burkholderia sp. CCGE1001]
Length = 175
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P K++ ++ EL S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALKVSSDQRAELRSQAHALKPVV---LIGAEGLTDAVLAEIKVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIY 114
E + +Q+ + +A + IG+ ++I+
Sbjct: 58 EREERIAIYEQICDTLNAAPIQHIGKLLVIW 88
>gi|424903996|ref|ZP_18327506.1| CRS1/YhbY domain-containing protein [Burkholderia thailandensis
MSMB43]
gi|390929974|gb|EIP87376.1| CRS1/YhbY domain-containing protein [Burkholderia thailandensis
MSMB43]
Length = 181
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSEAHALKPVV---LIGAEGLTDAVLAEIEVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
E + ++ + +A + IG+ ++I++P + E Q+ RR
Sbjct: 58 ERDERVAIYDEICDRLNAAPIQHIGKLLVIWKPE----QAEAAPQRGRR 102
>gi|313139758|ref|ZP_07801951.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|390936406|ref|YP_006393965.1| putative RNA-binding protein [Bifidobacterium bifidum BGN4]
gi|313132268|gb|EFR49885.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|389890019|gb|AFL04086.1| putative RNA-binding protein [Bifidobacterium bifidum BGN4]
Length = 101
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+ K+L + A+ L L +GK+ +TD V ET++++ELLK+ +
Sbjct: 3 LSKKQVKQLRAMANQLNPLL---YIGKNDLTDAAVKQASETMDSHELLKVAVQDGSGLTA 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ +L G+ VV IG ++YR S
Sbjct: 60 KEAADKLAGQIGAQVVQVIGNRFVLYRKS 88
>gi|421733279|ref|ZP_16172389.1| putative RNA-binding protein [Bifidobacterium bifidum LMG 13195]
gi|407078793|gb|EKE51589.1| putative RNA-binding protein [Bifidobacterium bifidum LMG 13195]
Length = 101
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+ K+L + A+ L L +GK+ +TD V ET++++ELLK+ +
Sbjct: 3 LSKKQVKQLRAMANQLNPLL---YIGKNDLTDAAVKQASETMDSHELLKVAVQDGSGLTA 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ +L G+ VV IG ++YR S
Sbjct: 60 KEAADKLAGQIGAQVVQVIGNRFVLYRKS 88
>gi|419719669|ref|ZP_14246939.1| RNA-binding protein, YhbY family [Lachnoanaerobaculum saburreum
F0468]
gi|383304161|gb|EIC95576.1| RNA-binding protein, YhbY family [Lachnoanaerobaculum saburreum
F0468]
Length = 98
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+ +TD + + E +E EL+KI + + C + + + + T S VV IG+ ++
Sbjct: 22 IGKASLTDENIFAIAEAMEPRELIKISVLKNCADDPKIIANHIASLTRSEVVQVIGKKIV 81
Query: 113 IYR 115
+Y+
Sbjct: 82 LYK 84
>gi|254429982|ref|ZP_05043689.1| CRS1 / YhbY domain superfamily [Alcanivorax sp. DG881]
gi|196196151|gb|EDX91110.1| CRS1 / YhbY domain superfamily [Alcanivorax sp. DG881]
Length = 104
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 44 LGKKLKCQLV-GKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSA 102
+G LK L+ G G++D V LE +EL+K+K++ + +V+ L E +
Sbjct: 14 IGHHLKPVLIFGDKGLSDNFVEELNLRLEDHELIKVKVNAETRDDRAAIVQALTEKGSAE 73
Query: 103 VVSQIGQTVIIYRPS 117
++ +IG ++YRP+
Sbjct: 74 LIQRIGNIALLYRPA 88
>gi|53718993|ref|YP_107979.1| hypothetical protein BPSL1354 [Burkholderia pseudomallei K96243]
gi|53725560|ref|YP_102538.1| hypothetical protein BMA0775 [Burkholderia mallei ATCC 23344]
gi|76809680|ref|YP_333017.1| CRS1/YhbY domain-contain protein [Burkholderia pseudomallei 1710b]
gi|121598460|ref|YP_992621.1| hypothetical protein BMASAVP1_A1286 [Burkholderia mallei SAVP1]
gi|124386490|ref|YP_001026577.1| hypothetical protein BMA10229_A0582 [Burkholderia mallei NCTC
10229]
gi|126438546|ref|YP_001058523.1| RNA-binding protein [Burkholderia pseudomallei 668]
gi|126451170|ref|YP_001080138.1| hypothetical protein BMA10247_0569 [Burkholderia mallei NCTC 10247]
gi|126454361|ref|YP_001065783.1| RNA-binding protein [Burkholderia pseudomallei 1106a]
gi|134282761|ref|ZP_01769464.1| putative RNA-binding protein [Burkholderia pseudomallei 305]
gi|167002791|ref|ZP_02268581.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
gi|217423392|ref|ZP_03454893.1| putative RNA-binding protein [Burkholderia pseudomallei 576]
gi|226196178|ref|ZP_03791763.1| putative RNA-binding protein [Burkholderia pseudomallei Pakistan 9]
gi|237811776|ref|YP_002896227.1| CRS1 [Burkholderia pseudomallei MSHR346]
gi|238563618|ref|ZP_00438572.2| CRS1 [Burkholderia mallei GB8 horse 4]
gi|242314302|ref|ZP_04813318.1| putative RNA-binding protein [Burkholderia pseudomallei 1106b]
gi|254178734|ref|ZP_04885389.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
gi|254180204|ref|ZP_04886803.1| putative RNA-binding protein [Burkholderia pseudomallei 1655]
gi|254188377|ref|ZP_04894888.1| putative RNA-binding protein [Burkholderia pseudomallei Pasteur
52237]
gi|254197885|ref|ZP_04904307.1| putative RNA-binding protein [Burkholderia pseudomallei S13]
gi|254199449|ref|ZP_04905815.1| conserved hypothetical protein [Burkholderia mallei FMH]
gi|254262045|ref|ZP_04953099.1| putative RNA-binding protein [Burkholderia pseudomallei 1710a]
gi|254298038|ref|ZP_04965491.1| putative RNA-binding protein [Burkholderia pseudomallei 406e]
gi|254358837|ref|ZP_04975110.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
gi|386862242|ref|YP_006275191.1| RNA-binding protein [Burkholderia pseudomallei 1026b]
gi|403518213|ref|YP_006652346.1| RNA-binding protein [Burkholderia pseudomallei BPC006]
gi|418387744|ref|ZP_12967580.1| RNA-binding protein [Burkholderia pseudomallei 354a]
gi|418538836|ref|ZP_13104438.1| RNA-binding protein [Burkholderia pseudomallei 1026a]
gi|418541372|ref|ZP_13106856.1| RNA-binding protein [Burkholderia pseudomallei 1258a]
gi|418547616|ref|ZP_13112760.1| RNA-binding protein [Burkholderia pseudomallei 1258b]
gi|418553775|ref|ZP_13118583.1| RNA-binding protein [Burkholderia pseudomallei 354e]
gi|52209407|emb|CAH35352.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|52428983|gb|AAU49576.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
gi|76579133|gb|ABA48608.1| CRS1 / YhbY domain family [Burkholderia pseudomallei 1710b]
gi|121227270|gb|ABM49788.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
gi|124294510|gb|ABN03779.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229]
gi|126218039|gb|ABN81545.1| putative RNA-binding protein [Burkholderia pseudomallei 668]
gi|126228003|gb|ABN91543.1| putative RNA-binding protein [Burkholderia pseudomallei 1106a]
gi|126244040|gb|ABO07133.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247]
gi|134245847|gb|EBA45938.1| putative RNA-binding protein [Burkholderia pseudomallei 305]
gi|147749045|gb|EDK56119.1| conserved hypothetical protein [Burkholderia mallei FMH]
gi|148027964|gb|EDK85985.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
gi|157807939|gb|EDO85109.1| putative RNA-binding protein [Burkholderia pseudomallei 406e]
gi|157936056|gb|EDO91726.1| putative RNA-binding protein [Burkholderia pseudomallei Pasteur
52237]
gi|160699773|gb|EDP89743.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
gi|169654626|gb|EDS87319.1| putative RNA-binding protein [Burkholderia pseudomallei S13]
gi|184210744|gb|EDU07787.1| putative RNA-binding protein [Burkholderia pseudomallei 1655]
gi|217393250|gb|EEC33271.1| putative RNA-binding protein [Burkholderia pseudomallei 576]
gi|225931764|gb|EEH27766.1| putative RNA-binding protein [Burkholderia pseudomallei Pakistan 9]
gi|237504562|gb|ACQ96880.1| CRS1 [Burkholderia pseudomallei MSHR346]
gi|238520334|gb|EEP83795.1| CRS1 [Burkholderia mallei GB8 horse 4]
gi|242137541|gb|EES23943.1| putative RNA-binding protein [Burkholderia pseudomallei 1106b]
gi|243061552|gb|EES43738.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
gi|254220734|gb|EET10118.1| putative RNA-binding protein [Burkholderia pseudomallei 1710a]
gi|385347121|gb|EIF53791.1| RNA-binding protein [Burkholderia pseudomallei 1026a]
gi|385358214|gb|EIF64234.1| RNA-binding protein [Burkholderia pseudomallei 1258a]
gi|385360429|gb|EIF66361.1| RNA-binding protein [Burkholderia pseudomallei 1258b]
gi|385371175|gb|EIF76378.1| RNA-binding protein [Burkholderia pseudomallei 354e]
gi|385376049|gb|EIF80767.1| RNA-binding protein [Burkholderia pseudomallei 354a]
gi|385659370|gb|AFI66793.1| RNA-binding protein [Burkholderia pseudomallei 1026b]
gi|403073856|gb|AFR15436.1| putative RNA-binding protein [Burkholderia pseudomallei BPC006]
Length = 184
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSEAHALKPVV---LIGAEGLTDAVLAEIEVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
E + ++ + +A + IG+ ++I++P + E Q+ RR
Sbjct: 58 ERDERVAIYDEICDRLNAAPIQHIGKLLVIWKPE----QAEAAPQRGRR 102
>gi|403050928|ref|ZP_10905412.1| putative RNA-binding protein [Acinetobacter bereziniae LMG 1003]
gi|445423390|ref|ZP_21436628.1| RNA-binding protein, YhbY family [Acinetobacter sp. WC-743]
gi|444755770|gb|ELW80345.1| RNA-binding protein, YhbY family [Acinetobacter sp. WC-743]
Length = 107
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+++E+K L H+L + ++G G+T+ VV L +EL+K+KI
Sbjct: 1 MATLSIQERKRLRQIGHALNPVV---MLGDKGLTESVVEELNRALNDHELIKVKI----A 53
Query: 86 GELED----VVKQLEEATGSAVVSQIGQTVIIYRPS 117
GE + + ++ E TG+ VV IG+ ++Y+ +
Sbjct: 54 GEDREARTATITEIAETTGAEVVQTIGKIALLYKKA 89
>gi|419781241|ref|ZP_14307073.1| RNA-binding protein, YhbY family [Streptococcus oralis SK100]
gi|383184633|gb|EIC77147.1| RNA-binding protein, YhbY family [Streptococcus oralis SK100]
Length = 103
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L S AH+L ++ +GK+G+ D + TS + L+A EL+K+ + + +
Sbjct: 3 LTSKQRAFLNSQAHTLKPIIQ---IGKNGLNDQIKTSVRQALDARELIKVTLLQNTDENI 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+VV+ LEE G V +IG+ +I+++ S
Sbjct: 60 HEVVEILEEEIGVDTVQKIGRILILFKQS 88
>gi|416939937|ref|ZP_11934417.1| hypothetical protein B1M_20658, partial [Burkholderia sp. TJI49]
gi|325524579|gb|EGD02606.1| hypothetical protein B1M_20658 [Burkholderia sp. TJI49]
Length = 100
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L+A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLKEIKVHLDAHQLIKIRVF-- 55
Query: 84 CPGELED----VVKQLEEATGSAVVSQIGQTVIIYRP 116
G+ D + ++ + G+A + IG+ ++I++P
Sbjct: 56 --GDERDTRIAIYDEICDRLGAAPIQHIGKLLVIWKP 90
>gi|255020637|ref|ZP_05292699.1| hypothetical protein ACA_0504 [Acidithiobacillus caldus ATCC 51756]
gi|340781166|ref|YP_004747773.1| hypothetical protein Atc_0422 [Acidithiobacillus caldus SM-1]
gi|254969873|gb|EET27373.1| hypothetical protein ACA_0504 [Acidithiobacillus caldus ATCC 51756]
gi|340555319|gb|AEK57073.1| conserved hypothetical protein [Acidithiobacillus caldus SM-1]
Length = 113
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ KE++ L + AH L L LVG +G+ ++ L +EL+K+++ EL
Sbjct: 2 LSSKERQALKARAHPLQPVL---LVGSAGLGPALMEELDRVLLHHELIKVRLP-AVEREL 57
Query: 89 ED-VVKQLEEATGSAVVSQIGQTVIIYRP 116
D +V ++ +G+ +++IG+ +I+YRP
Sbjct: 58 RDAMVAEILATSGAEAIARIGRILILYRP 86
>gi|27365049|ref|NP_760577.1| RNA binding protein [Vibrio vulnificus CMCP6]
gi|27361195|gb|AAO10104.1| RNA binding protein [Vibrio vulnificus CMCP6]
Length = 98
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AHSL L+G +G+T+ V+ L+ +EL+KIKI
Sbjct: 2 NLSTKQKQHLKGLAHSLKP---VVLMGANGLTEAVLAEIEIALDFHELIKIKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + TG+ V IG+T+++YR S
Sbjct: 59 KLLIVDAIVRETGAEKVQVIGKTLVLYRQS 88
>gi|83721041|ref|YP_443290.1| CRS1/YhbY domain-contain protein [Burkholderia thailandensis E264]
gi|257139526|ref|ZP_05587788.1| CRS1/YhbY domain-contain protein [Burkholderia thailandensis E264]
gi|83654866|gb|ABC38929.1| CRS1 / YhbY domain family [Burkholderia thailandensis E264]
Length = 181
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSEAHALKPVV---LIGAEGLTDAVLAEIEVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
E + ++ + +A + IG+ ++I++P + E Q+ RR
Sbjct: 58 ERDERVAIYDEICDRLNAAPIQHIGKLLVIWKPE----QAEAAPQRGRR 102
>gi|415721026|ref|ZP_11468270.1| hypothetical protein CGSMWGv00703Bmash_02309 [Gardnerella vaginalis
00703Bmash]
gi|388061287|gb|EIK83944.1| hypothetical protein CGSMWGv00703Bmash_02309 [Gardnerella vaginalis
00703Bmash]
Length = 101
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+ K+L + A++L L VGK+ ++D V ET++++EL+K +
Sbjct: 3 LTKKQIKQLRALANTLSPLL---YVGKNDISDAAVKQADETMQSHELMKCAVQDGSGLSA 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ ++L E G+ VV IG +++R S
Sbjct: 60 KEAAQELAEHLGAEVVQVIGNRFVLFRVS 88
>gi|242076096|ref|XP_002447984.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
gi|241939167|gb|EES12312.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
Length = 800
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 46 KKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVS 105
K+LK VGK+G+T+G+V E E++K++ + + LE TG V+
Sbjct: 162 KRLK---VGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIW 218
Query: 106 QIGQTVIIYR 115
+ G T+I+YR
Sbjct: 219 RSGSTIILYR 228
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 27 PKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPG 86
PKLT +E L AH L +G+S G+ S I+ E E+ KI + R
Sbjct: 436 PKLTDREMTILRRLAHPLPFHYA---LGRSSNLQGLAASMIKLWERCEVAKIALKRDAHN 492
Query: 87 -ELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ E + +++++ TG ++S+ ++++ YR
Sbjct: 493 TDSELITEEIKDLTGGTLLSRDKESIVFYR 522
>gi|385801667|ref|YP_005838070.1| RNA-binding protein, YhbY family [Gardnerella vaginalis HMP9231]
gi|415707188|ref|ZP_11462035.1| hypothetical protein CGSMWGv0288E_04986 [Gardnerella vaginalis
0288E]
gi|417556847|ref|ZP_12207904.1| RNA-binding protein, YhbY family [Gardnerella vaginalis 315-A]
gi|333393029|gb|AEF30947.1| RNA-binding protein, YhbY family [Gardnerella vaginalis HMP9231]
gi|333602535|gb|EGL13965.1| RNA-binding protein, YhbY family [Gardnerella vaginalis 315-A]
gi|388054188|gb|EIK77133.1| hypothetical protein CGSMWGv0288E_04986 [Gardnerella vaginalis
0288E]
Length = 101
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+ K+L + A++L L VGK+ ++D V ET++++EL+K +
Sbjct: 3 LTKKQIKQLRALANTLSPLL---YVGKNDISDAAVKQADETMQSHELMKCAVQDGSGLSA 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ ++L E G+ VV IG +++R S
Sbjct: 60 KEAAQELAEHLGAEVVQVIGNRFVLFRVS 88
>gi|6692258|gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
Length = 1020
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 15 EVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANE 74
E K PS + L LP E + L + L KKLK +GK+G+T+G+V E E
Sbjct: 155 EEKVPSLAELTLPP---AELRRLRTVGIRLTKKLK---IGKAGITEGIVNGIHERWRTTE 208
Query: 75 LLKI---KIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
++KI I R DV LE TG V+ + G +++YR
Sbjct: 209 VVKIFCEDISRMNMKRTHDV---LETKTGGLVIWRSGSKILLYR 249
>gi|410086362|ref|ZP_11283074.1| RNA binding protein [Morganella morganii SC01]
gi|421491563|ref|ZP_15938926.1| hypothetical protein MU9_0091 [Morganella morganii subsp. morganii
KT]
gi|455737335|ref|YP_007503601.1| RNA binding protein [Morganella morganii subsp. morganii KT]
gi|400193997|gb|EJO27130.1| hypothetical protein MU9_0091 [Morganella morganii subsp. morganii
KT]
gi|409767207|gb|EKN51287.1| RNA binding protein [Morganella morganii SC01]
gi|455418898|gb|AGG29228.1| RNA binding protein [Morganella morganii subsp. morganii KT]
Length = 97
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+ + L + AH L ++G +G+T+GV+ L +EL+K+KI GE
Sbjct: 2 NLTKKQVQHLKALAHHLNP---VVMIGNNGLTEGVLAETEVALTHHELIKVKI----AGE 54
Query: 88 LEDVVKQLEEA----TGSAVVSQIGQTVIIYRPSLTR 120
++ + +A TG+ V IG+ +++YRPS R
Sbjct: 55 DREMKTLIADAIVRETGAYNVQIIGKILVLYRPSEAR 91
>gi|254252703|ref|ZP_04946021.1| hypothetical protein BDAG_01942 [Burkholderia dolosa AUO158]
gi|124895312|gb|EAY69192.1| hypothetical protein BDAG_01942 [Burkholderia dolosa AUO158]
Length = 175
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLKEIDVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + ++ + +A + IG+ ++I++P
Sbjct: 58 ERDERVAIYDEICDRLNAAPIQHIGKLLVIWKP 90
>gi|444425459|ref|ZP_21220900.1| hypothetical protein B878_05939 [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444241321|gb|ELU52847.1| hypothetical protein B878_05939 [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 98
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AHSL L+G +G+T+ V+ L+ +EL+KIKI
Sbjct: 2 NLSTKQKQHLKGLAHSLKP---VVLMGANGLTEAVLAEIEIALDHHELIKIKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + TG+ V IG+ +++YR S
Sbjct: 59 KQLIIDAIVRETGAEKVQTIGKVLVLYRQS 88
>gi|167621276|ref|ZP_02389907.1| CRS1 / YhbY domain family protein [Burkholderia thailandensis Bt4]
gi|167815245|ref|ZP_02446925.1| CRS1 / YhbY domain family protein [Burkholderia pseudomallei 91]
Length = 110
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSEAHALKPVV---LIGAEGLTDAVLAEIEVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
E + ++ + +A + IG+ ++I++P + E Q+ RR
Sbjct: 58 ERDERVAIYDEICDRLNAAPIQHIGKLLVIWKPE----QAEAAPQRGRR 102
>gi|335357148|ref|ZP_08549018.1| hypothetical protein LaniK3_03988 [Lactobacillus animalis KCTC
3501]
Length = 103
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL K+K+ L + AH + + VGK G++ + + +E EL K+ I + E
Sbjct: 2 KLKGKQKRYLRAQAHGMRPLFQ---VGKEGLSANWLAQIEDAIEKRELFKVNILQNALVE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
E+V+ +E+ T VV +IG +++++ + R
Sbjct: 59 DEEVIAFIEDNTDIQVVQKIGHVLVLFKQANKR 91
>gi|386743785|ref|YP_006216964.1| RNA-binding protein [Providencia stuartii MRSN 2154]
gi|384480478|gb|AFH94273.1| RNA-binding protein [Providencia stuartii MRSN 2154]
Length = 97
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L K+ + L S AH L ++G +G+T+GV+ +L +EL+K+KI GE
Sbjct: 2 NLNKKQIQHLKSLAHHLNP---VVMIGNNGLTEGVLAEIELSLAHHELIKVKI----AGE 54
Query: 88 LEDVVKQLEEA----TGSAVVSQIGQTVIIYRPS 117
+ + A TG+ V IG+ +++YRPS
Sbjct: 55 DRETKNLIAAAIVRETGAVNVQIIGKILVLYRPS 88
>gi|330998882|ref|ZP_08322609.1| RNA-binding protein, YhbY family [Parasutterella excrementihominis
YIT 11859]
gi|329576096|gb|EGG57615.1| RNA-binding protein, YhbY family [Parasutterella excrementihominis
YIT 11859]
Length = 179
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 37 LASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLE 96
L + AH L L+G +G+T+ V+ L A+ L+K+K+ E + ++L
Sbjct: 14 LQAKAHHLDP---VVLLGGNGLTEAVIKEVDRALTAHGLIKVKVPSDDREERTAIFEELA 70
Query: 97 EATGSAVVSQIGQTVIIYRP 116
+ G+A ++QIG+ ++++RP
Sbjct: 71 DKLGAAKITQIGKLLVLFRP 90
>gi|148642770|ref|YP_001273283.1| RNA-binding protein [Methanobrevibacter smithii ATCC 35061]
gi|222445735|ref|ZP_03608250.1| hypothetical protein METSMIALI_01377 [Methanobrevibacter smithii
DSM 2375]
gi|261349718|ref|ZP_05975135.1| CRS1 / YhbY domain protein [Methanobrevibacter smithii DSM 2374]
gi|148551787|gb|ABQ86915.1| RNA-binding protein, CRS1/YhbY family [Methanobrevibacter smithii
ATCC 35061]
gi|222435300|gb|EEE42465.1| CRS1 / YhbY domain protein [Methanobrevibacter smithii DSM 2375]
gi|288861673|gb|EFC93971.1| CRS1 / YhbY domain protein [Methanobrevibacter smithii DSM 2374]
Length = 85
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+GV D V+ L+ANE++K+K + +D + + + T S ++ G +
Sbjct: 20 IGKAGVNDNVIEEIKRQLKANEIVKLKFAKNIAKNKDDYIADIVQKTRSKLIDVRGNVAV 79
Query: 113 IYR 115
IY+
Sbjct: 80 IYK 82
>gi|334143725|ref|YP_004536881.1| RNA-binding, CRM domain-containing protein [Thioalkalimicrobium
cyclicum ALM1]
gi|333964636|gb|AEG31402.1| RNA-binding, CRM domain protein [Thioalkalimicrobium cyclicum ALM1]
Length = 99
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 40 YAHSLGKKLK-CQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEA 98
Y LG L LVG G++D ++ + L +EL+KIKI + ++ +A
Sbjct: 11 YLKGLGHHLNPVILVGAQGISDNLLAELDKALSHHELIKIKIAHDDRDSRRAMNDEILKA 70
Query: 99 TGSAVVSQIGQTVIIYR 115
+ + +VS IG+T I+YR
Sbjct: 71 SKAVLVSAIGKTFILYR 87
>gi|261337898|ref|ZP_05965782.1| putative RNA-binding protein YqeI [Bifidobacterium gallicum DSM
20093]
gi|270277375|gb|EFA23229.1| putative RNA-binding protein YqeI [Bifidobacterium gallicum DSM
20093]
Length = 101
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+ K+L + AH ++ +GK+ +TD VV ET+ EL+K ++ +
Sbjct: 3 LTKKQIKQLRALAHHENPLVQ---IGKNDITDNVVKQAAETINKRELIKCQVMDGAGFDA 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEE 125
+ ++L G+ +V IG ++YR S TR +E
Sbjct: 60 AECAEKLAGQIGAQIVQVIGNRFVLYRKS-TRPDVEH 95
>gi|167738061|ref|ZP_02410835.1| CRS1 / YhbY domain family protein [Burkholderia pseudomallei 14]
gi|167823654|ref|ZP_02455125.1| CRS1 / YhbY domain family protein [Burkholderia pseudomallei 9]
gi|167845198|ref|ZP_02470706.1| CRS1 / YhbY domain family protein [Burkholderia pseudomallei B7210]
gi|167918466|ref|ZP_02505557.1| CRS1 / YhbY domain family protein [Burkholderia pseudomallei
BCC215]
Length = 108
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSEAHALKPVV---LIGAEGLTDAVLAEIEVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
E + ++ + +A + IG+ ++I++P + E Q+ RR
Sbjct: 58 ERDERVAIYDEICDRLNAAPIQHIGKLLVIWKPE----QAEAAPQRGRR 102
>gi|30678323|ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana]
gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana]
gi|332640136|gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana]
Length = 1011
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 15 EVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANE 74
E K PS + L LP E + L + L KKLK +GK+G+T+G+V E E
Sbjct: 155 EEKVPSLAELTLPP---AELRRLRTVGIRLTKKLK---IGKAGITEGIVNGIHERWRTTE 208
Query: 75 LLKI---KIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
++KI I R DV LE TG V+ + G +++YR
Sbjct: 209 VVKIFCEDISRMNMKRTHDV---LETKTGGLVIWRSGSKILLYR 249
>gi|406979652|gb|EKE01398.1| hypothetical protein ACD_21C00146G0007 [uncultured bacterium]
Length = 102
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT ++ +EL S H L + ++G G+T V+ L +EL+KI++H EL
Sbjct: 11 LTPQDIRELKSKVHHLKPVV---IIGDKGLTAAVIQEIDRALNDHELIKIRVHIEDREEL 67
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ ++ T ++++ IG V +YR
Sbjct: 68 NKITTEICTKTNASLIQVIGHIVAVYR 94
>gi|323342058|ref|ZP_08082291.1| RNA-binding protein YhbY [Erysipelothrix rhusiopathiae ATCC 19414]
gi|336066171|ref|YP_004561029.1| RNA-binding protein [Erysipelothrix rhusiopathiae str. Fujisawa]
gi|322464483|gb|EFY09676.1| RNA-binding protein YhbY [Erysipelothrix rhusiopathiae ATCC 19414]
gi|334296117|dbj|BAK31988.1| RNA-binding protein [Erysipelothrix rhusiopathiae str. Fujisawa]
Length = 94
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ +KKEL +H ++ +GK+G+T+ V +F ++ A+ L+K+ I + +
Sbjct: 2 LSKDQKKELKRISH---EEKTTVFIGKNGLTETVYETFETSMLAHNLVKVSIQKNSDVTI 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ V+ E+ +VS+IG+ + YR S
Sbjct: 59 LEAVEAFEDRFSCDLVSKIGRVAVFYRFS 87
>gi|350532313|ref|ZP_08911254.1| RNA binding protein [Vibrio rotiferianus DAT722]
Length = 98
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AHSL L+G +G+T+ V+ L +EL+KIK+
Sbjct: 2 NLSTKQKQHLKGLAHSLKP---VVLMGANGLTEAVLAEIEIALNHHELIKIKVASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + TG+ V IG+T+++YR S
Sbjct: 59 KQLIIDAIVRETGAEKVQVIGKTLVLYRQS 88
>gi|333396999|ref|ZP_08478812.1| putative RNA-binding protein [Leuconostoc gelidum KCTC 3527]
gi|406600386|ref|YP_006745732.1| putative RNA-binding protein [Leuconostoc gelidum JB7]
gi|406371921|gb|AFS40846.1| putative RNA-binding protein [Leuconostoc gelidum JB7]
Length = 104
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ +LT K+K+ L S A++L VGK+G+T V + + EL+KI + ++
Sbjct: 1 MLQLTGKQKRFLRSKANTLSPIFS---VGKNGLTQLWVNELVLAISKRELVKISLQQSAD 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+DV + ++ + V IG+T++++ P+
Sbjct: 58 NSAKDVAEFIQSHSDITVAQTIGRTLVLFLPA 89
>gi|315651837|ref|ZP_07904840.1| RNA-binding protein YhbY [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485839|gb|EFU76218.1| RNA-binding protein YhbY [Lachnoanaerobaculum saburreum DSM 3986]
Length = 98
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK+ +TD + + E +E EL+KI + + C + + + + T S VV IG+ ++
Sbjct: 22 IGKASLTDENIFAVAEAMEPRELIKISVLKNCADDPKIIANHIASLTRSEVVQVIGKKIV 81
Query: 113 IYR 115
+Y+
Sbjct: 82 LYK 84
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 835
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 19/142 (13%)
Query: 11 EAVEEVKSP-SRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIET 69
E +EE KS SRS L +LT+ E + + KK K + +G+SGVT VV E
Sbjct: 190 EELEERKSMRSRSKTSLAELTLPESELKRLLKLTFEKKHKTR-IGRSGVTQAVVDKIHER 248
Query: 70 LEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR------PSLTRMKL 123
+ +E++++K ++ + + LE TG V+ + G +V +YR PS+
Sbjct: 249 WKTSEIVRLKFEGEAALNMKRMHEILERKTGGLVIWRSGNSVSLYRGVSYEVPSV----- 303
Query: 124 EEKKQQARRVYVRKE--SKLKP 143
QQ +++Y + E SKL P
Sbjct: 304 ----QQNKKIYRKSENSSKLLP 321
>gi|422015353|ref|ZP_16361952.1| hypothetical protein OOA_11393 [Providencia burhodogranariea DSM
19968]
gi|414099518|gb|EKT61159.1| hypothetical protein OOA_11393 [Providencia burhodogranariea DSM
19968]
Length = 97
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L K+ + L S AH L ++G +G+T+GV+ +L +EL+KIKI GE
Sbjct: 2 NLNKKQIQHLKSLAHHLNP---VVMIGNNGLTEGVLAEIELSLAHHELIKIKI----AGE 54
Query: 88 LEDVVKQLEEA----TGSAVVSQIGQTVIIYRPSLTR 120
+ + +A T + V IG+ +++YRPS R
Sbjct: 55 DRETKNLIADAIVRETSAVNVQIIGKILVLYRPSAER 91
>gi|328946945|ref|YP_004364282.1| hypothetical protein Tresu_0015 [Treponema succinifaciens DSM 2489]
gi|328447269|gb|AEB12985.1| protein of unknown function UPF0044 [Treponema succinifaciens DSM
2489]
Length = 103
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++K L AH+L ++G++GVTD +V + +L+A+EL+K+K +
Sbjct: 4 ITSKQRKILEKAAHNLDP---IVIIGQNGVTDSLVQMVLNSLKAHELIKVKFNEYK---- 56
Query: 89 EDVVKQLEEA---TGSAVVSQIGQTVIIYRPS 117
ED K + T S +V IG I Y+ +
Sbjct: 57 EDRAKYANDIALRTDSTLVRIIGNVAIFYKEN 88
>gi|206559642|ref|YP_002230403.1| hypothetical protein BCAL1265 [Burkholderia cenocepacia J2315]
gi|421868906|ref|ZP_16300550.1| RNA binding protein [Burkholderia cenocepacia H111]
gi|444364407|ref|ZP_21164732.1| RNA-binding protein, YhbY family [Burkholderia cenocepacia BC7]
gi|444369449|ref|ZP_21169201.1| RNA-binding protein, YhbY family [Burkholderia cenocepacia
K56-2Valvano]
gi|198035680|emb|CAR51567.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
gi|358071042|emb|CCE51428.1| RNA binding protein [Burkholderia cenocepacia H111]
gi|443593040|gb|ELT61802.1| RNA-binding protein, YhbY family [Burkholderia cenocepacia BC7]
gi|443599095|gb|ELT67403.1| RNA-binding protein, YhbY family [Burkholderia cenocepacia
K56-2Valvano]
Length = 175
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L+A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLKEIKVHLDAHQLIKIRVF-- 55
Query: 84 CPGELED----VVKQLEEATGSAVVSQIGQTVIIYRP 116
G+ D + ++ + +A + IG+ ++I++P
Sbjct: 56 --GDERDTRIAIYDEICDRLNAAPIQHIGKLLVIWKP 90
>gi|91792358|ref|YP_562009.1| hypothetical protein Sden_0998 [Shewanella denitrificans OS217]
gi|91714360|gb|ABE54286.1| protein of unknown function UPF0044 [Shewanella denitrificans
OS217]
Length = 99
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ L AH+L ++G +G+T+GV+ L +EL+K+K+ E
Sbjct: 2 NLTTKQKQHLKGLAHNLKP---VVMLGANGLTEGVLAEIDSALTHHELIKVKV-AGADRE 57
Query: 88 LED-VVKQLEEATGSAVVSQIGQTVIIYRPS 117
L++ +V + T SA V IG ++++R S
Sbjct: 58 LKNAIVDAIVRETQSAKVQVIGHVLVLFRHS 88
>gi|291522341|emb|CBK80634.1| conserved hypothetical protein TIGR00253 [Coprococcus catus GD/7]
Length = 100
Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GKS VT + + E LEA EL+KI + + C + + + L E T + VV IG+ ++
Sbjct: 24 IGKSSVTPELTQAVEEALEARELIKISVLQNCLDDPRQMAEVLAERTHADVVQVIGKKIV 83
Query: 113 IYR 115
+Y+
Sbjct: 84 LYK 86
>gi|91784539|ref|YP_559745.1| hypothetical protein Bxe_A1260 [Burkholderia xenovorans LB400]
gi|91688493|gb|ABE31693.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
Length = 175
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P K++ ++ EL S AH+L + LVG G+TD V++ L A++L+KI++
Sbjct: 1 MPALKVSSDQRAELRSQAHALKPVV---LVGAEGLTDAVLSEIKVHLGAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKK 127
+ +++ + +A + IG+ ++I++P + ++ K+
Sbjct: 58 EREARLAIYEEICDKLNAAPIQHIGKLLVIWKPEAAQPAVKAKR 101
>gi|407697684|ref|YP_006822472.1| CRS1 / YhbY domain superfamily [Alcanivorax dieselolei B5]
gi|407255022|gb|AFT72129.1| CRS1 / YhbY domain superfamily [Alcanivorax dieselolei B5]
Length = 93
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 43 SLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGS 101
++G LK L G G+T+ LE +EL+K++++ + D+V L EA+G+
Sbjct: 3 TIGHHLKAVLQTGDKGLTESFTEELNLRLEDHELVKVRVNAPTRDQRTDLVNALCEASGA 62
Query: 102 AVVSQIGQTVIIYRPS 117
++ +IG ++YR +
Sbjct: 63 ELIQRIGNIALLYRAA 78
>gi|94311128|ref|YP_584338.1| RNA-binding protein, containing KH domain [Cupriavidus
metallidurans CH34]
gi|93354980|gb|ABF09069.1| RNA-binding protein, containing KH domain [Cupriavidus
metallidurans CH34]
Length = 169
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 14/116 (12%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +L ++ +L S AHSL + ++G G+T V+ +L A++L+KI++
Sbjct: 1 MPALQLISAQRSDLRSRAHSLNPVV---MIGAEGLTPAVLAEIDRSLAAHDLIKIRVL-- 55
Query: 84 CPGELEDVVKQLEEAT----GSAVVSQIGQTVIIYRPS---LTRMKLEEKKQQARR 132
G+ D + +A +A + IG+ ++I+RP L + EE ARR
Sbjct: 56 --GDERDARIAIYDAICDELSAAPIQHIGKLLVIWRPGPALLKENQPEELGAAARR 109
>gi|342215478|ref|ZP_08708125.1| RNA-binding protein, YhbY family [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341586368|gb|EGS29768.1| RNA-binding protein, YhbY family [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 95
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 39 SYAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
SY L LK ++ VGK G++ + LE EL+KI + + P + ++ +++
Sbjct: 7 SYLKGLANGLKAKMQVGKGGLSPEFYSQLEVLLENEELVKINVLKNAPVQAREIQEEILA 66
Query: 98 ATGSAVVSQIGQTVIIYRPS 117
TG+ VSQ+G ++IYRPS
Sbjct: 67 QTGAEFVSQLGNKLVIYRPS 86
>gi|260584201|ref|ZP_05851949.1| RNA-binding protein YqeI [Granulicatella elegans ATCC 700633]
gi|260158827|gb|EEW93895.1| RNA-binding protein YqeI [Granulicatella elegans ATCC 700633]
Length = 108
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 32 KEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDV 91
KE++ AHS+ + +GK G+++ ++ +E EL+K+ + + E ++
Sbjct: 6 KERQFFKKEAHSIKPIFQ---IGKGGLSEEMIQQIQFAIEKRELIKVSLLQNTMEEPQEA 62
Query: 92 VKQLEEATGSAVVSQIGQTVIIYRPS 117
+ L E TGS ++ IG T+++Y+ +
Sbjct: 63 AEVLAEQTGSTIIQVIGHTIVLYKQA 88
>gi|269123473|ref|YP_003306050.1| hypothetical protein Smon_0700 [Streptobacillus moniliformis DSM
12112]
gi|268314799|gb|ACZ01173.1| protein of unknown function UPF0044 [Streptobacillus moniliformis
DSM 12112]
Length = 112
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+ KE+ L AH L ++ VGK G+TD V+ S +E NEL+K+K+ L
Sbjct: 1 MNSKERNFLRKRAHGLEPVVR---VGKEGLTDMVIESIKSYIEKNELMKVKL---LQNSL 54
Query: 89 EDV----VKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEE 125
EDV + ++E V +G+ +I ++ + KL E
Sbjct: 55 EDVNIELINEIETKAKCFFVGSVGKVMIFFKEKRDKNKLGE 95
>gi|330816266|ref|YP_004359971.1| hypothetical protein bgla_1g13410 [Burkholderia gladioli BSR3]
gi|327368659|gb|AEA60015.1| hypothetical protein bgla_1g13410 [Burkholderia gladioli BSR3]
Length = 180
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPVERSALRSQAHALKPVV---LIGAEGLTDAVLAEIKVHLAAHQLIKIRVF-- 55
Query: 84 CPGELED----VVKQLEEATGSAVVSQIGQTVIIYRP 116
G+ D + + + + +A + IG+ ++I+RP
Sbjct: 56 --GDERDARIAIYEDICDRLNAAPIQHIGKLLVIWRP 90
>gi|264679345|ref|YP_003279252.1| hypothetical protein CtCNB1_3210 [Comamonas testosteroni CNB-2]
gi|299532304|ref|ZP_07045697.1| hypothetical protein CTS44_15938 [Comamonas testosteroni S44]
gi|418532365|ref|ZP_13098273.1| hypothetical protein CTATCC11996_21808 [Comamonas testosteroni ATCC
11996]
gi|262209858|gb|ACY33956.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
gi|298719712|gb|EFI60676.1| hypothetical protein CTS44_15938 [Comamonas testosteroni S44]
gi|371450596|gb|EHN63640.1| hypothetical protein CTATCC11996_21808 [Comamonas testosteroni ATCC
11996]
Length = 156
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT +++E + AH L + L+G G+T V L A+ L+K+++
Sbjct: 1 MPQIELTPAQRREHRAEAHHLDPVV---LIGGDGLTTAVQKEVDAALNAHGLIKVRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + +QL + +A + IG+ ++++RP
Sbjct: 58 DRAAREQIYQQLCDELNAAPIQHIGKLLVLWRP 90
>gi|219849999|ref|YP_002464432.1| hypothetical protein Cagg_3138 [Chloroflexus aggregans DSM 9485]
gi|219544258|gb|ACL25996.1| protein of unknown function UPF0044 [Chloroflexus aggregans DSM
9485]
Length = 95
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 9/68 (13%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEA----TGSAVVSQI 107
++GK G+T+ V++ + L+A+EL+K++ + +D+ + L EA TG+ +V+ I
Sbjct: 21 MIGKHGLTENVLSKIEQELDAHELIKMRF-----LDYKDLKQPLLEAIVATTGAELVATI 75
Query: 108 GQTVIIYR 115
G T I+YR
Sbjct: 76 GHTAILYR 83
>gi|240144152|ref|ZP_04742753.1| putative RNA-binding protein YqeI [Roseburia intestinalis L1-82]
gi|257203855|gb|EEV02140.1| putative RNA-binding protein YqeI [Roseburia intestinalis L1-82]
gi|291536199|emb|CBL09311.1| conserved hypothetical protein TIGR00253 [Roseburia intestinalis
M50/1]
gi|291538937|emb|CBL12048.1| conserved hypothetical protein TIGR00253 [Roseburia intestinalis
XB6B4]
Length = 110
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L A ++ +GK+ +T ++T+ E LE EL+K+ + + C +
Sbjct: 15 LTSKQRAYLGGCASTMDPIFH---IGKASLTPEIITALDEALEKRELIKVAVLKNCIDDP 71
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLE 124
++ E T S VV IG+ ++++R + K E
Sbjct: 72 REIAAVTAERTRSEVVKVIGKKIVLFRQAKKNTKYE 107
>gi|224823863|ref|ZP_03696972.1| protein of unknown function UPF0044 [Pseudogulbenkiania
ferrooxidans 2002]
gi|224604318|gb|EEG10492.1| protein of unknown function UPF0044 [Pseudogulbenkiania
ferrooxidans 2002]
Length = 110
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 33 EKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELED-- 90
E++ L AH + + ++G G+T+ VV L+A+EL+KI++ G+ D
Sbjct: 11 ERQYLKGLAHDIKPVV---MIGNHGLTEAVVREIAINLDAHELIKIRVQ----GDDRDAR 63
Query: 91 --VVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + G+A V IG+ ++++RPS
Sbjct: 64 VALYDKICDELGAAQVQHIGKLLVLWRPS 92
>gi|435852328|ref|YP_007313914.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Methanomethylovorans hollandica DSM
15978]
gi|433662958|gb|AGB50384.1| putative RNA-binding protein containing KH domain, possibly
ribosomal protein [Methanomethylovorans hollandica DSM
15978]
Length = 86
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE--DVVKQLEEATGSAVVSQIGQT 110
+GK+G+TD VV + L+AN L+KIK+ ++ E + + +L + T S ++ G
Sbjct: 22 IGKNGITDAVVEEIRKHLKANRLIKIKMLKSSREEKDTTTIAGELAQVTASQIIEIRGNN 81
Query: 111 VIIYR 115
V++YR
Sbjct: 82 VVLYR 86
>gi|134295358|ref|YP_001119093.1| hypothetical protein Bcep1808_1248 [Burkholderia vietnamiensis G4]
gi|387901931|ref|YP_006332270.1| RNA binding protein [Burkholderia sp. KJ006]
gi|134138515|gb|ABO54258.1| protein of unknown function UPF0044 [Burkholderia vietnamiensis G4]
gi|387576823|gb|AFJ85539.1| RNA binding protein [Burkholderia sp. KJ006]
Length = 174
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLKEIKVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + ++ + +A + IG+ ++I++P
Sbjct: 58 ERDERVAIYDEICDRLNAAPIQHIGKLLVIWKP 90
>gi|126642714|ref|YP_001085698.1| hypothetical protein A1S_2683 [Acinetobacter baumannii ATCC 17978]
Length = 84
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 8/70 (11%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELED----VVKQLEEATGSAVVSQI 107
++G G+TD V+ + L +EL+K+KI GE + V+ + EATG+ V +I
Sbjct: 1 MIGGQGLTDAVIEETLRALNDHELIKVKI----AGEDREARAAVIDAIVEATGAEAVQKI 56
Query: 108 GQTVIIYRPS 117
G+ V++Y+ +
Sbjct: 57 GKIVLLYKKA 66
>gi|374335268|ref|YP_005091955.1| hypothetical protein GU3_07245 [Oceanimonas sp. GK1]
gi|372984955|gb|AEY01205.1| hypothetical protein GU3_07245 [Oceanimonas sp. GK1]
Length = 98
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L K+++ L AHSL L+G+ G+T+GV+ L +EL+K+K+ E
Sbjct: 3 LNNKQRQYLKGLAHSLKP---VVLLGQHGLTEGVLAEIDLALNHHELIKVKV----AAED 55
Query: 89 EDVVKQLEEA----TGSAVVSQIGQTVIIYRPS 117
DV K + +A TG+ V IG + IYR S
Sbjct: 56 RDVKKLVMDAIVRETGAVKVQTIGHILTIYRQS 88
>gi|307546736|ref|YP_003899215.1| RNA-binding protein [Halomonas elongata DSM 2581]
gi|307218760|emb|CBV44030.1| K07574 putative RNA-binding protein containing KH domain [Halomonas
elongata DSM 2581]
Length = 108
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ +KK S H L + V ++G+++GVV L +EL+K+K+ +
Sbjct: 3 LSQAQKKAFRSIGHYLDPVVT---VSENGISEGVVAELDRALTDHELIKVKLALPERDDR 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR------PSLTRMKLEEKKQQAR 131
++++L EA+G+ ++ +IG+ + YR P L+ +K E+ R
Sbjct: 60 TAMIEELLEASGAELIQKIGKVALFYRHNPKVNPKLSNIKRFEEHHGRR 108
>gi|291546187|emb|CBL19295.1| conserved hypothetical protein TIGR00253 [Ruminococcus sp. SR1/5]
Length = 101
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L A ++ L+ +GK G+T + E L A EL+KI + + C +
Sbjct: 1 MTSKQRAYLKGLAMTMDPILQ---LGKGGLTPENTAAVEEALAARELIKISVLQNCLEDP 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ + L E T S VV IG+ +++YR
Sbjct: 58 REMAQVLAERTRSQVVQVIGKKIVLYR 84
>gi|317131327|ref|YP_004090641.1| hypothetical protein Ethha_0324 [Ethanoligenens harbinense YUAN-3]
gi|315469306|gb|ADU25910.1| protein of unknown function UPF0044 [Ethanoligenens harbinense
YUAN-3]
Length = 95
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K++ L A+++ + VGK GVT+ + + L A EL+K+++ T P
Sbjct: 2 LTSKQRAALRGMANTIDTLFQ---VGKQGVTETLQKQAEDALLARELIKLRVLETAPVTA 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ L +A G+ VV IG ++YR +
Sbjct: 59 KEAATLLAQALGAEVVQVIGTRFVLYRAN 87
>gi|416183698|ref|ZP_11612711.1| CRS1 / YhbY domain protein [Neisseria meningitidis M13399]
gi|325134055|gb|EGC56710.1| CRS1 / YhbY domain protein [Neisseria meningitidis M13399]
Length = 89
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+ KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 1 MNTKEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAER 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + V IG+ ++++R ++
Sbjct: 58 IEICTALCEAVDAQPVQHIGKLLVLWRKNI 87
>gi|385339774|ref|YP_005893646.1| CRS1 / YhbY domain protein [Neisseria meningitidis G2136]
gi|385342199|ref|YP_005896070.1| CRS1 / YhbY domain protein [Neisseria meningitidis M01-240149]
gi|385854944|ref|YP_005901457.1| CRS1 / YhbY domain protein [Neisseria meningitidis M01-240355]
gi|427828522|ref|ZP_18995538.1| CRS1 / YhbY domain protein [Neisseria meningitidis H44/76]
gi|316983791|gb|EFV62772.1| CRS1 / YhbY domain protein [Neisseria meningitidis H44/76]
gi|325198018|gb|ADY93474.1| CRS1 / YhbY domain protein [Neisseria meningitidis G2136]
gi|325202405|gb|ADY97859.1| CRS1 / YhbY domain protein [Neisseria meningitidis M01-240149]
gi|325203885|gb|ADY99338.1| CRS1 / YhbY domain protein [Neisseria meningitidis M01-240355]
Length = 89
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+ KE EL + AH L + +VG+ G+TD V+ L A+EL+K+++ E
Sbjct: 1 MNTKEILELKARAHHLHPVV---MVGQQGLTDAVIKETDAALTAHELIKVRVFGDDRAER 57
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSL 118
++ L EA + V IG+ ++++R ++
Sbjct: 58 IEICTALCEAVDAQPVQHIGKLLVLWRKNI 87
>gi|167893749|ref|ZP_02481151.1| CRS1 / YhbY domain family protein [Burkholderia pseudomallei 7894]
Length = 115
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSEAHALKPVV---LIGAEGLTDAVLAEIEVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
E + ++ + +A + IG+ ++I++P + E Q+ RR
Sbjct: 58 ERDERVAIYDEICDRLNAAPIQHIGKLLVIWKPE----QAEAAPQRGRR 102
>gi|410861592|ref|YP_006976826.1| RNA binding protein [Alteromonas macleodii AltDE1]
gi|410818854|gb|AFV85471.1| RNA binding protein [Alteromonas macleodii AltDE1]
Length = 97
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ K+K+ L AH L K QL G +G+T+GVV L +EL+K+K+ E
Sbjct: 2 KLSNKQKQFLKGLAHPL--KPVVQL-GGNGLTEGVVAEIDNALNHHELIKVKVPTDDREE 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + T + + IG T+IIYR S
Sbjct: 59 KALIMDAIVRETNAVKLQVIGHTLIIYRQS 88
>gi|351728203|ref|ZP_08945894.1| hypothetical protein AradN_00400 [Acidovorax radicis N35]
Length = 157
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +LT E++E + AH L + L+G G+T V L A+ L+K+++
Sbjct: 1 MPQIQLTPAERREQRANAHHLDPVV---LIGGDGLTPAVQKEIDAALNAHGLIKVRVFND 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKL--EEKKQQARRVYVRKESK 140
E + +QL +A + IG+ ++++RP + + E++ R V V K SK
Sbjct: 58 DRVARELMYQQLTAELNAAPIQHIGKLLVLWRPQPVKERTVDEDRMPGPRDVKVLKYSK 116
>gi|345864623|ref|ZP_08816822.1| RNA binding protein [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345877968|ref|ZP_08829699.1| RNA binding protein, possibly ribosomal protein [endosymbiont of
Riftia pachyptila (vent Ph05)]
gi|344225007|gb|EGV51379.1| RNA binding protein, possibly ribosomal protein [endosymbiont of
Riftia pachyptila (vent Ph05)]
gi|345124320|gb|EGW54201.1| RNA binding protein [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 98
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ ++ ++L AH L + ++G+ G+++ V++ L +EL+K+K+ E
Sbjct: 3 LSTQQNRKLKQLAHHLKPVV---IIGQHGLSENVMSEIELALSHHELIKVKLAGADKAER 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
E + + E +G+A+V IG+ I YR +
Sbjct: 60 EQLSSAITEQSGAALVQIIGRVAIFYRAN 88
>gi|347541234|ref|YP_004848660.1| CRS1/YhbY domain containing protein [Pseudogulbenkiania sp. NH8B]
gi|345644413|dbj|BAK78246.1| CRS1/YhbY domain protein [Pseudogulbenkiania sp. NH8B]
Length = 108
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 33 EKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELED-- 90
E++ L AH + + ++G G+T+ VV L+A+EL+KI++ G+ D
Sbjct: 9 ERQYLKGLAHDIKPVV---MIGNHGLTEAVVREIAINLDAHELIKIRVQ----GDDRDAR 61
Query: 91 --VVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + G+A V IG+ ++++RPS
Sbjct: 62 VALYDKICDELGAAQVQHIGKLLVLWRPS 90
>gi|333901776|ref|YP_004475649.1| RNA-binding, CRM domain-containing protein [Pseudomonas fulva 12-X]
gi|333117041|gb|AEF23555.1| RNA-binding, CRM domain protein [Pseudomonas fulva 12-X]
Length = 103
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT ++KK+ S H L L +V +GVT+GVV L +EL+KI++ +
Sbjct: 3 LTQEQKKQFKSIGHHLKPVL---IVADNGVTEGVVAELERALNDHELIKIQVRVAERDDR 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
V+++L +A + + IG+ ++YR +
Sbjct: 60 LAVIEELCKAGNAELAQVIGKMALLYRKN 88
>gi|417842693|ref|ZP_12488774.1| RNA-binding protein [Haemophilus haemolyticus M21127]
gi|341951252|gb|EGT77829.1| RNA-binding protein [Haemophilus haemolyticus M21127]
Length = 99
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+ K+ + L AH L + ++G +G+T+GV+ L +EL+K+K+
Sbjct: 1 MTTLSTKQNQFLKGLAHHLNPVV---MLGGNGLTEGVLAEIENALNHHELIKVKVAGADR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T +A V IG +++YRPS
Sbjct: 58 ETKQLIIDAIVRETKAAQVQTIGHILVLYRPS 89
>gi|171318233|ref|ZP_02907396.1| protein of unknown function UPF0044 [Burkholderia ambifaria MEX-5]
gi|171096577|gb|EDT41471.1| protein of unknown function UPF0044 [Burkholderia ambifaria MEX-5]
Length = 175
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLKEIKVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + ++ + +A + IG+ ++I++P
Sbjct: 58 ERDERVAIYDEICDRLNAAPIQHIGKLLVIWKP 90
>gi|357496109|ref|XP_003618343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355493358|gb|AES74561.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 1096
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 44 LGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSA 102
LG ++K ++ VGK+GVT+G+V E +E++++ C ++ LE TG
Sbjct: 162 LGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMKRTHDILERKTGGL 221
Query: 103 VVSQIGQTVIIYR 115
VV + G +I+YR
Sbjct: 222 VVWRSGSKIILYR 234
>gi|260771822|ref|ZP_05880740.1| predicted RNA-binding protein [Vibrio metschnikovii CIP 69.14]
gi|260613114|gb|EEX38315.1| predicted RNA-binding protein [Vibrio metschnikovii CIP 69.14]
Length = 112
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L L+G +G+T+ V+ L +EL+K+K+
Sbjct: 16 NLSNKQKQHLKGLAHHLNP---VVLMGANGLTEAVLAEIEIALNYHELIKVKVVS----- 67
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V + TG+ V IG+T+++YRPS
Sbjct: 68 -EDRETKLLIVDAIVRETGAEKVQVIGKTLVLYRPS 102
>gi|319638319|ref|ZP_07993082.1| hypothetical protein HMPREF0604_00706 [Neisseria mucosa C102]
gi|317400592|gb|EFV81250.1| hypothetical protein HMPREF0604_00706 [Neisseria mucosa C102]
Length = 95
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KL+ KE L + AH L + +VG+ G+T+ V+ L A+EL+K+++ E
Sbjct: 5 KLSTKEILALKAQAHHLHPVV---MVGQQGLTESVIKETDAALTAHELIKVRVFGDDRAE 61
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ L E G+ +V IG+ ++++R
Sbjct: 62 RIEICDALCETLGAQLVQHIGKLLVLWR 89
>gi|261492159|ref|ZP_05988730.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261312232|gb|EEY13364.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 122
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L AH L + ++G +G+T+GV+ L+ +EL+K+K+
Sbjct: 23 LTTKQKQFLKGLAHHLSPVV---MLGGNGLTEGVLAEIDNALDHHELIKVKVAGADRETK 79
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKK 127
+ ++ + T +A V IG +++YR S EEKK
Sbjct: 80 QLIIDAILRETKAAEVQTIGHILVLYRQS------EEKK 112
>gi|254556449|ref|YP_003062866.1| hypothetical protein JDM1_1282 [Lactobacillus plantarum JDM1]
gi|300767172|ref|ZP_07077084.1| CRS1/YhbY domain protein [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308180391|ref|YP_003924519.1| hypothetical protein LPST_C1206 [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380032376|ref|YP_004889367.1| RNA binding protein, YhbY family [Lactobacillus plantarum WCFS1]
gi|418275052|ref|ZP_12890464.1| RNA binding protein, YhbY family [Lactobacillus plantarum subsp.
plantarum NC8]
gi|448821058|ref|YP_007414220.1| RNA binding protein, YhbY family [Lactobacillus plantarum ZJ316]
gi|254045376|gb|ACT62169.1| conserved hypothetical protein [Lactobacillus plantarum JDM1]
gi|300494991|gb|EFK30147.1| CRS1/YhbY domain protein [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308045882|gb|ADN98425.1| hypothetical protein LPST_C1206 [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342241619|emb|CCC78853.1| RNA binding protein, YhbY family [Lactobacillus plantarum WCFS1]
gi|376009523|gb|EHS82851.1| RNA binding protein, YhbY family [Lactobacillus plantarum subsp.
plantarum NC8]
gi|448274555|gb|AGE39074.1| RNA binding protein, YhbY family [Lactobacillus plantarum ZJ316]
Length = 104
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
VGK+G+TD +T L+ EL+K+ I + +V +E+ T VV IG+ ++
Sbjct: 25 VGKNGLTDEWLTQLTGALDKRELIKVNILQNADVTTAEVKAAIEQKTAITVVQTIGRVLV 84
Query: 113 IYRPS 117
+Y P+
Sbjct: 85 LYLPA 89
>gi|385800115|ref|YP_005836519.1| hypothetical protein [Halanaerobium praevalens DSM 2228]
gi|309389479|gb|ADO77359.1| protein of unknown function UPF0044 [Halanaerobium praevalens DSM
2228]
Length = 95
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K + L S A+SL + VGK G+T+ V+ L +ELLK++I +
Sbjct: 2 LTGKNRSYLRSEANSLNPIVH---VGKDGITESVIEQLDSALADHELLKVRILESTGRTT 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++L ATG+ +V IG +++R
Sbjct: 59 RSAAEELATATGAELVQVIGGIAVLFR 85
>gi|323492034|ref|ZP_08097199.1| RNA-binding protein [Vibrio brasiliensis LMG 20546]
gi|323313763|gb|EGA66862.1| RNA-binding protein [Vibrio brasiliensis LMG 20546]
Length = 98
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKI---HRTC 84
L+ K+K+ L AHSL L+G +G+T+ V+ L +EL+KIK+ R
Sbjct: 2 NLSTKQKQHLKGLAHSLKP---VVLMGANGLTEAVLAEIEIALNHHELIKIKVASEDRET 58
Query: 85 PGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLTR 120
G + D + + TG+ V IG+T+++YR + R
Sbjct: 59 KGLIIDAIVR---ETGAEKVQVIGKTLVLYRQTEDR 91
>gi|172060239|ref|YP_001807891.1| hypothetical protein BamMC406_1184 [Burkholderia ambifaria MC40-6]
gi|171992756|gb|ACB63675.1| protein of unknown function UPF0044 [Burkholderia ambifaria MC40-6]
Length = 175
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLKEIKVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + ++ + +A + IG+ ++I++P
Sbjct: 58 ERDERVAIYDEICDRLSAAPIQHIGKLLVIWKP 90
>gi|115351225|ref|YP_773064.1| hypothetical protein Bamb_1172 [Burkholderia ambifaria AMMD]
gi|115281213|gb|ABI86730.1| protein of unknown function UPF0044 [Burkholderia ambifaria AMMD]
Length = 175
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLKEIKVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + ++ + +A + IG+ ++I++P
Sbjct: 58 ERDERVAIYDEICDRLSAAPIQHIGKLLVIWKP 90
>gi|430805044|ref|ZP_19432159.1| RNA-binding protein, containing KH domain [Cupriavidus sp. HMR-1]
gi|429502745|gb|ELA01051.1| RNA-binding protein, containing KH domain [Cupriavidus sp. HMR-1]
Length = 169
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 17/143 (11%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P +L ++ +L S AHSL + ++G G+T V+ +L A++L+KI++
Sbjct: 1 MPALQLISAQRSDLRSRAHSLNPVV---MIGAEGLTRAVLAEIDRSLAAHDLIKIRVL-- 55
Query: 84 CPGELEDVVKQLEEAT----GSAVVSQIGQTVIIYRPSLTRMK---LEEKKQQARRVYVR 136
G+ D + +A +A + IG+ ++I+RP +K EE ARR
Sbjct: 56 --GDERDARIAIYDAICDELSAAPIQHIGKLLVIWRPGPALLKENLPEELGAAARRRATG 113
Query: 137 KESKLKPLLLKKAGVSRLSGRRR 159
+ + ++++K SG+RR
Sbjct: 114 TGAAPRTVMVRKPST---SGQRR 133
>gi|303232196|ref|ZP_07318899.1| RNA-binding protein, YhbY family [Veillonella atypica
ACS-049-V-Sch6]
gi|302513302|gb|EFL55341.1| RNA-binding protein, YhbY family [Veillonella atypica
ACS-049-V-Sch6]
Length = 94
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K+K+ L S A ++ ++ +GK+G+ D V+ S L A EL+K+K+ P E
Sbjct: 1 MTGKQKRYLRSLAATMPAVVQ---IGKNGLEDSVIDSARAALLARELIKVKLLNNSP-ED 56
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + ++L + G+ +V IG +IY+
Sbjct: 57 KAIFQELADMLGAELVQVIGFNGVIYK 83
>gi|37680901|ref|NP_935510.1| RNA-binding protein [Vibrio vulnificus YJ016]
gi|320155432|ref|YP_004187811.1| RNA binding protein [Vibrio vulnificus MO6-24/O]
gi|37199651|dbj|BAC95481.1| predicted RNA-binding protein [Vibrio vulnificus YJ016]
gi|319930744|gb|ADV85608.1| RNA binding protein [Vibrio vulnificus MO6-24/O]
Length = 98
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AHSL L+G +G+T+ V+ L +EL+KIKI
Sbjct: 2 NLSTKQKQHLKGLAHSLKP---VVLMGANGLTEAVLAEIEIALNFHELIKIKIASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+V + TG+ V IG+T+++YR S
Sbjct: 59 KLLIVDAIVRETGAEKVQVIGKTLVLYRQS 88
>gi|405355085|ref|ZP_11024311.1| RNA binding protein [Chondromyces apiculatus DSM 436]
gi|397091427|gb|EJJ22229.1| RNA binding protein [Myxococcus sp. (contaminant ex DSM 436)]
Length = 96
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+++ L + H L + +VG++GVT+GV+ + + L+ +EL+K+KI+ P
Sbjct: 3 LTGKQRRHLRALGHHLEPVV---IVGQAGVTEGVIAAVEQALQDHELIKVKINE-GPETR 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ +++ E + + +G+T ++++
Sbjct: 59 QEGAQRIAEGAQAELAQLLGRTALLFK 85
>gi|392548519|ref|ZP_10295656.1| RNA binding protein; ancient RNA-binding IF3-C fold
[Pseudoalteromonas rubra ATCC 29570]
Length = 98
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L + L+G +G+T+GV+ + L+ +EL+K+K+
Sbjct: 3 LSNKQKQYLKGLAHDLKPVV---LLGGNGLTEGVLLEIEQCLDIHELIKVKVPTNDRETK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKKQQARR 132
+ + + + TG+ V IG V++YR S E+KK Q R
Sbjct: 60 QLIFEAIIRETGAHKVQTIGHIVVLYRQS------EDKKIQLPR 97
>gi|313893705|ref|ZP_07827272.1| RNA-binding protein, YhbY family [Veillonella sp. oral taxon 158
str. F0412]
gi|313441719|gb|EFR60144.1| RNA-binding protein, YhbY family [Veillonella sp. oral taxon 158
str. F0412]
Length = 94
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K+K+ L S A ++ ++ +GK+G+ D V+ S L A EL+K+K+H E
Sbjct: 1 MTGKQKRYLRSLAATMPPVVQ---IGKNGLEDSVIDSARAALMARELIKVKLHNNS-SED 56
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ + ++L + G+ +V IG ++Y+
Sbjct: 57 KTIFEELADMLGAELVQVIGFNGVLYK 83
>gi|51245530|ref|YP_065414.1| hypothetical protein DP1678 [Desulfotalea psychrophila LSv54]
gi|50876567|emb|CAG36407.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 115
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 27 PKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPG 86
P L +EKK L AHSL ++ +GK +T ++ + L+ +EL+K+KI ++
Sbjct: 15 PVLNSREKKFLKGLAHSLAVGVQ---IGKEDLTPSLIDATKLELDRHELVKVKIGKSSGL 71
Query: 87 ELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+ ++ ++L T S+ V IG+T+++Y+
Sbjct: 72 DKKEASEKLPLLTESSFVQLIGKTIVLYK 100
>gi|402566923|ref|YP_006616268.1| hypothetical protein GEM_2159 [Burkholderia cepacia GG4]
gi|402248120|gb|AFQ48574.1| protein of unknown function UPF0044 [Burkholderia cepacia GG4]
Length = 175
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLKEIKVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + ++ + +A + IG+ ++I++P
Sbjct: 58 ERDERVAIYDEICDRLSAAPIQHIGKLLVIWKP 90
>gi|389714638|ref|ZP_10187212.1| RNA-binding protein [Acinetobacter sp. HA]
gi|388609773|gb|EIM38919.1| RNA-binding protein [Acinetobacter sp. HA]
Length = 107
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+++E+K L H+L ++G G+T+ V+ L +EL+K+K+
Sbjct: 1 MASLSIQERKRLRQIGHALNP---VVMLGDKGLTENVIEELERALNDHELIKVKVVAEDR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ ++ EATG+ +V IG+ ++Y+ +
Sbjct: 58 EARAVLITEIVEATGAEIVQTIGKIALLYKKA 89
>gi|153835621|ref|ZP_01988288.1| conserved hypothetical protein [Vibrio harveyi HY01]
gi|156975671|ref|YP_001446578.1| hypothetical protein VIBHAR_03406 [Vibrio harveyi ATCC BAA-1116]
gi|269961972|ref|ZP_06176327.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|388602400|ref|ZP_10160796.1| hypothetical protein VcamD_21206 [Vibrio campbellii DS40M4]
gi|424033925|ref|ZP_17773336.1| RNA-binding protein YhbY [Vibrio cholerae HENC-01]
gi|424038004|ref|ZP_17776675.1| RNA-binding protein YhbY [Vibrio cholerae HENC-02]
gi|424047602|ref|ZP_17785161.1| RNA-binding protein YhbY [Vibrio cholerae HENC-03]
gi|148867772|gb|EDL67021.1| conserved hypothetical protein [Vibrio harveyi HY01]
gi|156527265|gb|ABU72351.1| hypothetical protein VIBHAR_03406 [Vibrio harveyi ATCC BAA-1116]
gi|269833295|gb|EEZ87399.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|408874038|gb|EKM13221.1| RNA-binding protein YhbY [Vibrio cholerae HENC-01]
gi|408883840|gb|EKM22607.1| RNA-binding protein YhbY [Vibrio cholerae HENC-03]
gi|408894891|gb|EKM31454.1| RNA-binding protein YhbY [Vibrio cholerae HENC-02]
Length = 98
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AHSL L+G +G+T+ V+ L+ +EL+KIK+
Sbjct: 2 NLSTKQKQHLKGLAHSLKP---VVLMGANGLTEAVLAEIEIALDHHELIKIKVASEDRET 58
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + TG+ V IG+ +++YR S
Sbjct: 59 KQLIIDAIVRETGAEKVQTIGKVLVLYRQS 88
>gi|218132486|ref|ZP_03461290.1| hypothetical protein BACPEC_00345 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992596|gb|EEC58598.1| RNA-binding protein, YhbY family [[Bacteroides] pectinophilus ATCC
43243]
Length = 103
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
+T K++ L A ++ + +GKS +T V E L+ EL+KI + + C +
Sbjct: 6 MTSKQRAYLKGLAMTMDPIFQ---IGKSSITPEFVKGISEALDKRELIKISVLQNCADDP 62
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++ + + E T S VV IG+ +++Y+
Sbjct: 63 KELAEIIAERTRSQVVQVIGKKIVLYK 89
>gi|170697950|ref|ZP_02889033.1| protein of unknown function UPF0044 [Burkholderia ambifaria
IOP40-10]
gi|170137116|gb|EDT05361.1| protein of unknown function UPF0044 [Burkholderia ambifaria
IOP40-10]
Length = 175
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P L+ E+ L S AH+L + L+G G+TD V+ L A++L+KI++
Sbjct: 1 MPALSLSPAERSALRSQAHALKPVV---LIGAEGLTDAVLKEIKVHLAAHQLIKIRVFGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E + ++ + +A + IG+ ++I++P
Sbjct: 58 ERDERVAIYDEICDRLSAAPIQHIGKLLVIWKP 90
>gi|218782781|ref|YP_002434099.1| hypothetical protein Dalk_4959 [Desulfatibacillum alkenivorans
AK-01]
gi|218764165|gb|ACL06631.1| protein of unknown function UPF0044 [Desulfatibacillum alkenivorans
AK-01]
Length = 102
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 33 EKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELE-DV 91
E+K L AH + + +VG+ G+TDG++ S E L+ +EL+K+K L+ ++
Sbjct: 7 ERKYLRGLAHGMKPVV---IVGQKGLTDGLIASVDEALDLHELIKVKFGDYKEKALKTEI 63
Query: 92 VKQLEEATGSAVVSQIGQTVIIYR 115
+ +E+ +V IG I YR
Sbjct: 64 SEAIEKGAKCEMVGMIGHMAIFYR 87
>gi|88860502|ref|ZP_01135140.1| RNA binding protein; ancient RNA-binding IF3-C fold
[Pseudoalteromonas tunicata D2]
gi|88817700|gb|EAR27517.1| RNA binding protein; ancient RNA-binding IF3-C fold
[Pseudoalteromonas tunicata D2]
Length = 98
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AH L L+G +G+T+GVV L+ +EL+K+K+
Sbjct: 3 LSNKQKQFLKGLAHGLKP---VVLLGSNGLTEGVVVEISNALDIHELIKVKVPTDDRETK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ + + TG+ + IG ++IYR S
Sbjct: 60 ALIFEAITRETGAVKLQTIGHIIVIYRQS 88
>gi|134094398|ref|YP_001099473.1| hypothetical protein HEAR1168 [Herminiimonas arsenicoxydans]
gi|133738301|emb|CAL61346.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
Length = 156
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KLT E+ L + AH+L + ++G++G+T GV+ +L+++ L+K+++
Sbjct: 3 KLTPAERSSLRAEAHALSPVV---IIGEAGLTPGVLKEIDASLDSHGLIKVRVFGDDREA 59
Query: 88 LEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+ + E +A + IG+ ++IYRP
Sbjct: 60 RVAIYDTICEKLDTAPIQHIGKLLVIYRP 88
>gi|116490945|ref|YP_810489.1| RNA-binding protein [Oenococcus oeni PSU-1]
gi|419857812|ref|ZP_14380515.1| RNA-binding protein [Oenococcus oeni AWRIB202]
gi|419859604|ref|ZP_14382258.1| RNA-binding protein [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421185345|ref|ZP_15642756.1| RNA-binding protein [Oenococcus oeni AWRIB318]
gi|421188822|ref|ZP_15646154.1| RNA-binding protein [Oenococcus oeni AWRIB419]
gi|421189611|ref|ZP_15646925.1| RNA-binding protein [Oenococcus oeni AWRIB422]
gi|421190930|ref|ZP_15648214.1| RNA-binding protein [Oenococcus oeni AWRIB548]
gi|421193548|ref|ZP_15650794.1| RNA-binding protein [Oenococcus oeni AWRIB553]
gi|116091670|gb|ABJ56824.1| RNA-binding protein, KH domain [Oenococcus oeni PSU-1]
gi|399964155|gb|EJN98809.1| RNA-binding protein [Oenococcus oeni AWRIB419]
gi|399964526|gb|EJN99167.1| RNA-binding protein [Oenococcus oeni AWRIB318]
gi|399971707|gb|EJO05946.1| RNA-binding protein [Oenococcus oeni AWRIB553]
gi|399972701|gb|EJO06900.1| RNA-binding protein [Oenococcus oeni AWRIB422]
gi|399973626|gb|EJO07791.1| RNA-binding protein [Oenococcus oeni AWRIB548]
gi|410496621|gb|EKP88104.1| RNA-binding protein [Oenococcus oeni DSM 20252 = AWRIB129]
gi|410497283|gb|EKP88758.1| RNA-binding protein [Oenococcus oeni AWRIB202]
Length = 106
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 40 YAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEA 98
Y S G +L VGK+G+T + ++ L +EL+KI + ++ +++ +K +++
Sbjct: 11 YLRSQGNQLPAIFSVGKNGLTKIWLGQVLDALRVHELIKISLQQSAVVDIDAAIKFIQKN 70
Query: 99 TGSAVVSQIGQTVIIYRPS 117
+ + +IG T+++Y PS
Sbjct: 71 SQITIAQKIGHTLLLYLPS 89
>gi|319897098|ref|YP_004135293.1| RNA-binding protein [Haemophilus influenzae F3031]
gi|317432602|emb|CBY80963.1| predicted RNA-binding protein [Haemophilus influenzae F3031]
Length = 99
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+ K+K+ L AH L + ++G +G+T+GV+ L +EL+K+K+
Sbjct: 1 MTTLSTKQKQFLKGLAHHLNPVV---MLGGNGLTEGVLAEIENALNYHELIKVKVAGADR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T + V IG +++YRPS
Sbjct: 58 ETKQLIIDAIVRETKATQVQTIGHILVLYRPS 89
>gi|290890419|ref|ZP_06553494.1| hypothetical protein AWRIB429_0884 [Oenococcus oeni AWRIB429]
gi|419758906|ref|ZP_14285218.1| RNA-binding protein [Oenococcus oeni AWRIB304]
gi|421195409|ref|ZP_15652617.1| RNA-binding protein [Oenococcus oeni AWRIB568]
gi|421197522|ref|ZP_15654697.1| RNA-binding protein [Oenococcus oeni AWRIB576]
gi|290479815|gb|EFD88464.1| hypothetical protein AWRIB429_0884 [Oenococcus oeni AWRIB429]
gi|399904361|gb|EJN91817.1| RNA-binding protein [Oenococcus oeni AWRIB304]
gi|399975131|gb|EJO09199.1| RNA-binding protein [Oenococcus oeni AWRIB576]
gi|399975834|gb|EJO09869.1| RNA-binding protein [Oenococcus oeni AWRIB568]
Length = 106
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 40 YAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEA 98
Y S G +L VGK+G+T + ++ L +EL+KI + ++ +++ +K +++
Sbjct: 11 YLRSQGNQLPAIFSVGKNGLTKIWLGQVLDALRVHELIKISLQQSAVVDIDAAIKFIQKN 70
Query: 99 TGSAVVSQIGQTVIIYRPS 117
+ + +IG T+++Y PS
Sbjct: 71 SQIMIAQKIGHTLLLYLPS 89
>gi|422319363|ref|ZP_16400438.1| hypothetical protein HMPREF0005_02637 [Achromobacter xylosoxidans
C54]
gi|317405976|gb|EFV86254.1| hypothetical protein HMPREF0005_02637 [Achromobacter xylosoxidans
C54]
Length = 200
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P+ +LT +E+ +L S AH L L+G +G+T+ V+ L ++ L+K++
Sbjct: 1 MPILELTSRERSDLRSAAHPL---RPVVLIGDNGLTEAVLKEIDLALTSHGLIKVRAGGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
E ++ + + A V +G+T+I++RP
Sbjct: 58 DREAREAMLSTICDTLSCAPVHHLGKTLILFRP 90
>gi|254361527|ref|ZP_04977665.1| possible RNA-binding protein [Mannheimia haemolytica PHL213]
gi|261495744|ref|ZP_05992186.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|452744969|ref|ZP_21944808.1| hypothetical protein F388_07843 [Mannheimia haemolytica serotype 6
str. H23]
gi|153093045|gb|EDN74061.1| possible RNA-binding protein [Mannheimia haemolytica PHL213]
gi|261308599|gb|EEY09860.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|452087024|gb|EME03408.1| hypothetical protein F388_07843 [Mannheimia haemolytica serotype 6
str. H23]
Length = 104
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L AH L ++G +G+T+GV+ L+ +EL+K+K+
Sbjct: 5 LTTKQKQFLKGLAHHLSP---VVMLGGNGLTEGVLAEIDNALDHHELIKVKVAGADRETK 61
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPSLTRMKLEEKK 127
+ ++ + T +A V IG +++YR S EEKK
Sbjct: 62 QLIIDAILRETKAAEVQTIGHILVLYRQS------EEKK 94
>gi|421481888|ref|ZP_15929471.1| CRS1/YhbY domain-containing protein [Achromobacter piechaudii HLE]
gi|400200203|gb|EJO33156.1| CRS1/YhbY domain-containing protein [Achromobacter piechaudii HLE]
Length = 200
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
+P+ +LT +E+ +L S AH L L+G +G+T+ V+ L ++ L+K++
Sbjct: 1 MPILELTSRERSDLRSAAHPL---RPVVLIGDNGLTEAVLKEIDLALSSHGLIKVRAGGD 57
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+ ++ + + A V +G+T+I++RP
Sbjct: 58 DREARDTMLSTICDTLSCAPVHHLGKTLILFRP 90
>gi|359454518|ref|ZP_09243798.1| RNA-binding protein [Pseudoalteromonas sp. BSi20495]
gi|414071576|ref|ZP_11407542.1| RNA-binding protein [Pseudoalteromonas sp. Bsw20308]
gi|358048438|dbj|GAA80047.1| RNA-binding protein [Pseudoalteromonas sp. BSi20495]
gi|410806016|gb|EKS12016.1| RNA-binding protein [Pseudoalteromonas sp. Bsw20308]
Length = 98
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
L+ K+K+ L AHSL L+G +G+T+GVV LE +EL+K+K P +
Sbjct: 3 LSNKQKQFLKGQAHSLKP---VVLLGSNGLTEGVVMEIKSALEIHELIKVK----APTDD 55
Query: 89 EDVVKQLEEA----TGSAVVSQIGQTVIIYRPSLTR 120
+ + EA TG+ + IG T+++Y S R
Sbjct: 56 RETKALIFEAIVRETGATKLQTIGHTIVLYLQSAER 91
>gi|319776272|ref|YP_004138760.1| RNA-binding protein [Haemophilus influenzae F3047]
gi|317450863|emb|CBY87087.1| predicted RNA-binding protein [Haemophilus influenzae F3047]
Length = 99
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+ K+K+ L AH L + ++G +G+T+GV+ L +EL+K+K+
Sbjct: 1 MTTLSTKQKQFLKGLAHHLNPVV---MLGGNGLTEGVLAEIENALNHHELIKVKVAGADR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T + V IG +++YRPS
Sbjct: 58 ETKQLIIDAIVRETKATQVQTIGHILVLYRPS 89
>gi|296109596|ref|YP_003616545.1| protein of unknown function UPF0044 [methanocaldococcus infernus
ME]
gi|295434410|gb|ADG13581.1| protein of unknown function UPF0044 [Methanocaldococcus infernus
ME]
Length = 123
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTC--P 85
+LT K K+ L + AH L VGK G +D V+ LEA L+K+K+ +
Sbjct: 2 RLTGKMKRILRAKAHHLEP---VVWVGKEG-SDKVIKEVDRQLEARGLIKVKVRKAALLY 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRP 116
+ E++ +L + T S VVS IG + ++RP
Sbjct: 58 EDKEEIANKLAKETDSEVVSVIGNVITLFRP 88
>gi|117926974|ref|YP_867591.1| hypothetical protein Mmc1_3700 [Magnetococcus marinus MC-1]
gi|117610730|gb|ABK46185.1| protein of unknown function UPF0044 [Magnetococcus marinus MC-1]
Length = 106
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 39 SYAHSLGKKLK-CQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEE 97
+Y L LK VGK GV D V+ + E L +EL+K++ + +D+ K L
Sbjct: 9 TYLKGLAHPLKPVVFVGKEGVKDSVLAAVEEALLIHELIKVRF-LDFKEQRKDLAKALAT 67
Query: 98 ATGSAVVSQIGQTVIIYR----PSLTRMKLEEKK 127
+ S +V IG I+YR P R++L +KK
Sbjct: 68 DSQSELVGMIGHLAILYRAHPEPEHRRIQLPKKK 101
>gi|383936854|ref|ZP_09990273.1| RNA-binding protein [Rheinheimera nanhaiensis E407-8]
gi|383702091|dbj|GAB60364.1| RNA-binding protein [Rheinheimera nanhaiensis E407-8]
Length = 98
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L + AH L + L+G +G+T+GVV L +EL+K+K+ +
Sbjct: 3 LTNKQKQFLKAKAHDLKPVI---LLGSNGLTEGVVAEIDNALNFHELIKVKVPTEDREQK 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
++ + T + V IG+ ++++RPS
Sbjct: 60 VLIMDAIVRETKAEQVQVIGKMLVLFRPS 88
>gi|212555549|gb|ACJ28003.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
Length = 99
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
LT K+K+ L AHSL ++G +G+T+GV+ L +EL+K+KI + E
Sbjct: 2 NLTTKQKQHLKGLAHSLKP---VVMLGGNGLTEGVLAEIDSALSHHELIKVKI-ASGDRE 57
Query: 88 LED-VVKQLEEATGSAVVSQIGQTVIIYRPS 117
L++ +V + T + V IG ++++R S
Sbjct: 58 LKNAIVDAIVRETQAVQVQLIGHVLVLFRQS 88
>gi|414073528|ref|YP_006998745.1| RNA binding protein, CRS1/YhbY family [Lactococcus lactis subsp.
cremoris UC509.9]
gi|413973448|gb|AFW90912.1| RNA binding protein, CRS1/YhbY family [Lactococcus lactis subsp.
cremoris UC509.9]
Length = 104
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 40 YAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEA 98
Y SL +K + +GKSG+++ ++TS +A EL+K+ I + +DV + +EE
Sbjct: 10 YLRSLAVNIKPIVQIGKSGLSNEILTSIRSACDARELIKVNILQNSDEVAKDVAEAIEE- 68
Query: 99 TGSAVVSQIGQTVIIYRPS 117
G VV IG+ +I+++ S
Sbjct: 69 MGLDVVQIIGRNLIVFKVS 87
>gi|225024765|ref|ZP_03713957.1| hypothetical protein EIKCOROL_01651 [Eikenella corrodens ATCC
23834]
gi|224942472|gb|EEG23681.1| hypothetical protein EIKCOROL_01651 [Eikenella corrodens ATCC
23834]
Length = 94
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 52 LVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTV 111
L+GK G+T+ V+ L A EL+K+++ E + + L ATG+ +V IG+ +
Sbjct: 24 LIGKQGLTEAVIKETDTRLTARELIKVQVAGDDRQERIAIAEALCAATGAELVQHIGKQL 83
Query: 112 IIYRP 116
+++RP
Sbjct: 84 VLWRP 88
>gi|12723081|gb|AAK04322.1|AE006260_5 hypothetical protein L26054 [Lactococcus lactis subsp. lactis
Il1403]
Length = 102
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 40 YAHSLGKKLKCQL-VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEA 98
Y SL +K + +GKSG+++ ++TS +A EL+K+ I + DV + +EE
Sbjct: 8 YLRSLAVNIKPIVQIGKSGLSNEILTSIRNAADARELIKVNILQNSDEVATDVAEAIEE- 66
Query: 99 TGSAVVSQIGQTVIIYRPS 117
G VV IG+ +I+++ S
Sbjct: 67 MGLDVVQIIGRNLIVFKVS 85
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.128 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,322,420,896
Number of Sequences: 23463169
Number of extensions: 89352072
Number of successful extensions: 255322
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 614
Number of HSP's that attempted gapping in prelim test: 253902
Number of HSP's gapped (non-prelim): 1718
length of query: 171
length of database: 8,064,228,071
effective HSP length: 131
effective length of query: 40
effective length of database: 9,285,520,228
effective search space: 371420809120
effective search space used: 371420809120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 71 (32.0 bits)