BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038665
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54454|YQEI_BACSU Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168)
GN=yqeI PE=4 SV=1
Length = 96
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT K+K+ L S AH L + VGK GV D ++ E LEA EL+K+ + + C +
Sbjct: 2 LTGKQKRFLRSKAHHLTPIFQ---VGKGGVNDNMIKQIAEALEARELIKVSVLQNCEEDK 58
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
DV + L + + S +V IG T+++Y+ S
Sbjct: 59 NDVAEALVKGSRSQLVQTIGNTIVLYKES 87
>sp|P0AGK7|YHBY_SHIFL RNA-binding protein YhbY OS=Shigella flexneri GN=yhbY PE=4 SV=1
Length = 97
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKI------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V+ + TG+ V IG+T+++YRP+
Sbjct: 53 TEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPT 88
>sp|P0AGK4|YHBY_ECOLI RNA-binding protein YhbY OS=Escherichia coli (strain K12) GN=yhbY
PE=1 SV=1
Length = 97
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKI------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V+ + TG+ V IG+T+++YRP+
Sbjct: 53 TEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPT 88
>sp|P0AGK5|YHBY_ECOL6 RNA-binding protein YhbY OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=yhbY PE=4 SV=1
Length = 97
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKI------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V+ + TG+ V IG+T+++YRP+
Sbjct: 53 TEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPT 88
>sp|P0AGK6|YHBY_ECO57 RNA-binding protein YhbY OS=Escherichia coli O157:H7 GN=yhbY PE=4
SV=1
Length = 97
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 15/96 (15%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
L+ K+K+ L AH L + L+G +G+T+GV+ + LE +EL+K+KI
Sbjct: 2 NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKI------A 52
Query: 88 LED------VVKQLEEATGSAVVSQIGQTVIIYRPS 117
ED +V+ + TG+ V IG+T+++YRP+
Sbjct: 53 TEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPT 88
>sp|P71376|Y1333_HAEIN RNA-binding protein HI_1333 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=HI_1333 PE=1 SV=1
Length = 99
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 26 LPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCP 85
+ L+ K+K+ L AH L + ++G +G+T+GV+ L +EL+K+K+
Sbjct: 1 MTTLSTKQKQFLKGLAHHLNPVV---MLGGNGLTEGVLAEIENALNHHELIKVKVAGADR 57
Query: 86 GELEDVVKQLEEATGSAVVSQIGQTVIIYRPS 117
+ ++ + T +A V IG +++YRPS
Sbjct: 58 ETKQLIINAIVRETKAAQVQTIGHILVLYRPS 89
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT +E +EL + ++L +G+ G+T ++ + + + + KIK C ++
Sbjct: 243 LTKEEVRELVTSCLKTTRQLN---MGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDM 299
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++V +QLEE G V+ + G + ++R
Sbjct: 300 DNVCEQLEEKIGGKVIYRRGGVLFLFR 326
>sp|P95453|Y4753_PSEAE Probable RNA-binding protein PA4753 OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=PA4753 PE=4 SV=1
Length = 104
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT ++KK+ S H L L +V ++G+T+GV+ L +EL+K+K+ +
Sbjct: 3 LTQEQKKQFKSIGHHLKPVL---IVAENGLTEGVLAELERALNDHELIKVKLALAERDDR 59
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++ +L + S +V IG+ ++YR
Sbjct: 60 RALLDELCAQSRSDLVQSIGKMALVYR 86
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+G+ G+T ++ + + + KIK C ++++V +QLEE G V+ G +
Sbjct: 206 IGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVIF 265
Query: 113 IYR 115
++R
Sbjct: 266 LFR 268
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+G+ G+T ++ + + + KIK C +++++ QLEE G V+ + G +
Sbjct: 206 MGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNICHQLEEKVGGKVIHRQGGVIF 265
Query: 113 IYR 115
++R
Sbjct: 266 LFR 268
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 40 YAHSLGKKLKCQL---VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLE 96
+ + L LKC+ VG+ G+ GV+ + + ++ L++ I P E++++ +L
Sbjct: 182 HFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELA 241
Query: 97 EATGSAVVS-QIGQTVIIYR 115
TG V+ G T+I+YR
Sbjct: 242 RLTGGIVLDVHEGNTIIMYR 261
>sp|Q9HBL6|LRTM1_HUMAN Leucine-rich repeat and transmembrane domain-containing protein 1
OS=Homo sapiens GN=LRTM1 PE=2 SV=1
Length = 345
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 41 AHSLGKKLKCQ-LVGKSGVTDGVVTSFIETLEANELLKI--KIHRTCPGELEDVVKQLEE 97
H LG KL + V K G+TDG++ +T + +LL+I ++++ CP D V +
Sbjct: 186 CHLLGLKLWLEKFVYKGGLTDGIICESPDTWKGKDLLRIPHELYQPCPLPAPDPVSSQAQ 245
Query: 98 ATGSA 102
GSA
Sbjct: 246 WPGSA 250
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 35/63 (55%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+G+ G+T ++ + +E +++K ++++V QLE+ TG ++ + G +I
Sbjct: 180 LGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLI 239
Query: 113 IYR 115
+YR
Sbjct: 240 LYR 242
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT E + L S ++L +G+ G+T ++ E+ K++ ++
Sbjct: 234 LTPSEVRALVKPHISHNRQLN---IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDM 290
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++ LEE +G V+ ++G V +YR
Sbjct: 291 KNLCYHLEEKSGGKVIHRVGGVVFLYR 317
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 53 VGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVI 112
+GK GVT ++ + E ++IK +++++ LE+ TG V+ + +I
Sbjct: 168 LGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILI 227
Query: 113 IYR 115
+YR
Sbjct: 228 LYR 230
>sp|P39997|NPP2_YEAST Ectonucleotide pyrophosphatase/phosphodiesterase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NPP2 PE=1
SV=1
Length = 493
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 27 PKLTVKEKKELASYAHSLGKKLKCQLVGK-SGVTDGVVTSFIETLEANELLKI 78
P+L + + SY HS G L+ + + K G DG IE L+ LLKI
Sbjct: 246 PELVISYIPNVDSYGHSFGYDLRDKRLQKLIGEVDGFFLDLIEGLQKRNLLKI 298
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 29 LTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGEL 88
LT E+K L K + L G+ G+T ++ + E +++K ++
Sbjct: 159 LTEAERKFLVELCQRNKTKRQVNL-GRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDM 217
Query: 89 EDVVKQLEEATGSAVVSQIGQTVIIYR 115
++V+ LE+ T VVS+ T+++YR
Sbjct: 218 KNVIFHLEDKTFGQVVSKHSGTLVLYR 244
>sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 9 GSEAVEEVKSPSRSPLPL----PKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVT 64
G E +E + +P+ P+ + P+LT EK LAS HSL + QL + G +
Sbjct: 79 GKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSL-FAIGSQLSPEQG------S 131
Query: 65 SFIETLEANELLKIKIHRTCPG 86
S IE LE + K+ ++T G
Sbjct: 132 SGIEMLETDT-FKLHCYQTLTG 152
>sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens
GN=TRAPPC4 PE=1 SV=1
Length = 219
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 9 GSEAVEEVKSPSRSPLPL----PKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVT 64
G E +E + +P+ P+ + P+LT EK LAS HSL + QL + G +
Sbjct: 79 GKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSL-FAIGSQLSPEQG------S 131
Query: 65 SFIETLEANELLKIKIHRTCPG 86
S IE LE + K+ ++T G
Sbjct: 132 SGIEMLETDT-FKLHCYQTLTG 152
>sp|Q58068|Y652_METJA Probable RNA-binding protein MJ0652 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0652 PE=4 SV=1
Length = 134
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 28 KLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRTCPGE 87
KLT K K+ L + AH L VGK G ++ V+ L+ L+K+K+ R
Sbjct: 12 KLTGKMKRMLRAKAHHLEP---VVWVGKEG-SEKVIKEVDRQLKERGLIKVKV-RKAALL 66
Query: 88 LED---VVKQLEEATGSAVVSQIGQTVIIYRP 116
ED + ++L +A + VVS +G + ++RP
Sbjct: 67 YEDKYEIAEKLAKACDAEVVSVVGHVITLFRP 98
>sp|B8F7X4|RIMM_HAEPS Ribosome maturation factor RimM OS=Haemophilus parasuis serovar 5
(strain SH0165) GN=rimM PE=3 SV=1
Length = 175
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 9 GSEAVEEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIE 68
G+E E + + + + + E +E Y H L + CQ+V G G VT +E
Sbjct: 69 GTEDRETAQLLTNAEIGVDLAVFPELEEGDYYWHDL---IGCQVVNLEGYAMGTVTEMME 125
Query: 69 TLEANELLKIKI---------HRTCPGELEDVVKQLEEATGSAVVSQ 106
T +N++L +K R P E VVK+++ AT + V
Sbjct: 126 T-GSNDVLVVKAGSKDAFGKQERLIPFLYEQVVKRVDLATKTITVDW 171
>sp|A4J4E2|ADDB_DESRM ATP-dependent helicase/deoxyribonuclease subunit B
OS=Desulfotomaculum reducens (strain MI-1) GN=addB PE=3
SV=1
Length = 1155
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 66 FIETLEANELLKIKIHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
F ++L A+ L ++K++R P EL+ ++ ++EA GSA+ ++ ++Y
Sbjct: 119 FADSL-ASALSELKLYRIEPQELQKGIQHMQEAPGSAIRDKLADLSLLYN 167
>sp|P81644|APOA2_BOVIN Apolipoprotein A-II OS=Bos taurus GN=APOA2 PE=1 SV=2
Length = 100
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 91 VVKQLEEATGSAVVSQIGQTVIIYRPSLT-RMKLEEKKQQARRVYVRKESKLKPLLLKKA 149
V +Q EE+ ++VSQ QTV Y L + K E + QA+ + + + +L P KKA
Sbjct: 21 VRRQAEESNLQSLVSQYFQTVADYGKDLVEKAKGSELQTQAKAYFEKTQEELTP-FFKKA 79
Query: 150 GVSRLS 155
G L+
Sbjct: 80 GTDLLN 85
>sp|Q4ADG7|MX1_OTABY Interferon-induced GTP-binding protein Mx1 OS=Otaria byronia GN=MX1
PE=2 SV=1
Length = 658
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 58 VTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLE-EATGSAVVS-QIGQTVI--- 112
+TD V +F + EAN ++RT ++ED+ +LE EA S + Q+ Q V
Sbjct: 474 ITDMVQAAFTDISEANFAEFFNLYRTTKSKIEDIKFELEKEAEKSIRLHFQMEQIVYCQD 533
Query: 113 -IYRPSLTRMKLEEKKQQARRVYVRKESKLKPLLLKKAGV-SRLSGRRRRGSSRFSSR 168
+Y+ +L R++ E K++ +++ ++ + + + + L R+ ++R SS
Sbjct: 534 QVYQCALQRVREESDKEKDKKINSMCSKEVSSVNISLSDIFEHLLAYRQEATNRISSH 591
>sp|Q4ADG8|MX1_EUMJU Interferon-induced GTP-binding protein Mx1 OS=Eumetopias jubatus
GN=MX1 PE=2 SV=1
Length = 658
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 58 VTDGVVTSFIETLEANELLKIKIHRTCPGELEDVVKQLE-EATGSAVVS-QIGQTVI--- 112
+TD V +F + EAN ++RT ++ED+ +LE EA S + Q+ Q V
Sbjct: 474 ITDMVQAAFTDISEANFAEFFNLYRTTKSKIEDIKFELEKEAEKSIRLHFQMEQIVYCQD 533
Query: 113 -IYRPSLTRMKLEEKKQQARRVYVRKESKLKPLLLKKAGV-SRLSGRRRRGSSRFSSR 168
+Y+ +L R++ E K + R++ ++ + + + + L R+ ++R SS
Sbjct: 534 QVYQCALQRVREESDKGKDRKINSMCSKEVSSVNISLSDIFEHLLAYRQEATNRISSH 591
>sp|A1T6A4|NUOC_MYCVP NADH-quinone oxidoreductase subunit C OS=Mycobacterium vanbaalenii
(strain DSM 7251 / PYR-1) GN=nuoC PE=3 SV=1
Length = 225
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 82 RTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLT 119
R G +DVV LE A G V ++ + V++YR LT
Sbjct: 45 RPYGGYFDDVVDALESALGHDVFAESVERVVVYRDELT 82
>sp|Q1RHF1|RRF_RICBR Ribosome-recycling factor OS=Rickettsia bellii (strain RML369-C)
GN=frr PE=3 SV=1
Length = 186
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQL 52
LP+P LT + +KELA AH G+ K L
Sbjct: 101 LPIPALTEERRKELAKLAHKYGEDTKISL 129
>sp|A8GV48|RRF_RICB8 Ribosome-recycling factor OS=Rickettsia bellii (strain OSU 85-389)
GN=frr PE=3 SV=1
Length = 186
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQL 52
LP+P LT + +KELA AH G+ K L
Sbjct: 101 LPIPALTEERRKELAKLAHKYGEDTKISL 129
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 20 SRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIK 79
SR + LT E ++L S ++L +G+ G+T ++ E+ K++
Sbjct: 221 SREEVLGEPLTAAEVRDLVKPHISHNRQLN---IGRDGLTHNMLEMIHCHWRRQEICKVR 277
Query: 80 IHRTCPGELEDVVKQLEEATGSAVVSQIGQTVIIYR 115
+++++ LEE +G V+ ++G V +YR
Sbjct: 278 CRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYR 313
>sp|Q8XZJ7|DNLJ_RALSO DNA ligase OS=Ralstonia solanacearum (strain GMI1000) GN=ligA PE=3
SV=1
Length = 813
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 24 LPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGVVTSFIETLEANELLKIKIHRT 83
L +PKLT K+LA+ SL + G+ V S + L+A++ HRT
Sbjct: 655 LGVPKLTAIRSKQLATLVPSLAQLANVDTAQLEGLPADVAASLLAWLDADD------HRT 708
Query: 84 CPGELEDVVKQLEEATGSAVVSQ---IGQTVIIYR--PSLTR 120
G L+ + +L A + + G+TV++ P+L+R
Sbjct: 709 RLGTLDALRAELLAAMPAGAAEEGALSGKTVVLTGTLPTLSR 750
>sp|Q8NBF2|NHLC2_HUMAN NHL repeat-containing protein 2 OS=Homo sapiens GN=NHLRC2 PE=1 SV=1
Length = 726
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 3 KKTVVVGSEAVEEVKSPSRSPLPLPKLTVKEKKELASYAHSLGKKLKCQLVGKSGVTDGV 62
+ VV G VE+ K+ + P P +++ A +L KL+ L S +T+GV
Sbjct: 575 ENAVVDGPFLVEKQKTLPKLPKSAP--SIRLSPVTACAGQTLQFKLRLDLPSGSKLTEGV 632
Query: 63 VTSFIETLEANE-LLKIKIHRTCPGELEDVVKQ 94
+ + T E NE LL+ +I G++E++ Q
Sbjct: 633 SSCWFLTAEGNEWLLQGQI---AAGDIENISSQ 662
>sp|P18656|APOA2_MACFA Apolipoprotein A-II OS=Macaca fascicularis GN=APOA2 PE=1 SV=2
Length = 100
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 84 CPGELEDVVKQLEEATGSAVVSQIGQTVIIYRPSLT-RMKLEEKKQQARRVYVRKESKLK 142
C E V +Q EE + ++VSQ QTV Y L ++K E + QA+ + + + +L
Sbjct: 14 CSLEGALVRRQAEEPSVESLVSQYFQTVTDYGKDLMEKVKSPELQAQAKAYFEKSKEQLT 73
Query: 143 PLLLKKAG 150
P L+KKAG
Sbjct: 74 P-LVKKAG 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,147,338
Number of Sequences: 539616
Number of extensions: 2280515
Number of successful extensions: 7116
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 7065
Number of HSP's gapped (non-prelim): 85
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)