BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038667
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 61 FYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYA 112
++ ISIG PP DTGSS LWV C + + + F PS+SS+Y+
Sbjct: 25 YFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYS 76
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 51 LPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSS 110
+P + N+ +Y +I++G PP +DTGSS LWV C + L + + SSS
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSS 64
Query: 111 Y 111
Y
Sbjct: 65 Y 65
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 51 LPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSS 110
+P + N+ +Y +I++G PP +DTGSS LWV C + L + + SSS
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSS 64
Query: 111 Y 111
Y
Sbjct: 65 Y 65
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 51 LPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSS 110
+P + N+ +Y +I++G PP +DTGSS LWV C + L + + SSS
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSS 64
Query: 111 Y 111
Y
Sbjct: 65 Y 65
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 58 NSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYA 112
++ ++ ISIG PP DTGSS LWV C+ + + F PS SS+Y+
Sbjct: 11 DAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYS 65
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 51 LPSNDISNSL-FYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSS 109
+P D N + +Y ++IG P DTGSS LW+ C +C + T + P++SS
Sbjct: 6 VPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQ-TKYDPNQSS 64
Query: 110 SY 111
+Y
Sbjct: 65 TY 66
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 51 LPSNDISNSL-FYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSS 109
+P D N + +Y ++IG P DTGSS LW+ C +C T + P++SS
Sbjct: 6 VPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQ-TKYDPNQSS 64
Query: 110 SY 111
+Y
Sbjct: 65 TY 66
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 47 QAQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPS 106
+ ++ +D++N +FY +G DTGS+ LWV C + ++ S
Sbjct: 50 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSS 109
Query: 107 RSSSY 111
+S SY
Sbjct: 110 KSKSY 114
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 47 QAQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPS 106
+ ++ +D++N +FY +G DTGS+ LWV C + ++ S
Sbjct: 4 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSS 63
Query: 107 RSSSY 111
+S SY
Sbjct: 64 KSKSY 68
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 57 SNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSY 111
+++ +Y ISIG PP DTGSS LWV C + F P +SS+Y
Sbjct: 10 ADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTY 64
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 23/138 (16%)
Query: 23 QRGINISIARLAYLQ--EKIRSHNTYQAQILPSNDISNSLFYVNISIGQPPVPQFTAMDT 80
+RG++++ + Q +++ NT + IL + ++ +Y I IG PP DT
Sbjct: 25 ERGVDMARLGPEWSQPMKRLTLGNTTSSVIL--TNYMDTQYYGEIGIGTPPQTFKVVFDT 82
Query: 81 GSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQ 140
GSS +WV PS S Y C + + F + S+YKH
Sbjct: 83 GSSNVWV-----------------PSSKCSRLYTAC--VYHKLFDASDSSSYKHNGTELT 123
Query: 141 LYLIGPETSVFVSTEQLT 158
L S F+S + +T
Sbjct: 124 LRYSTGTVSGFLSQDIIT 141
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 48 AQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWV---HCYPCRDCSPQLGTIFY 104
A + +ND S ++ I IG PP DTGSS+LWV C + C +++
Sbjct: 3 AVVALTNDRDTS-YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAH--SMYE 59
Query: 105 PSRSSSY 111
S SS+Y
Sbjct: 60 SSDSSTY 66
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 54 NDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSY 111
+D++N +FY IG P DTGS+ LWV C ++ S S SY
Sbjct: 9 DDVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKHLYDASASKSY 66
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 21/115 (18%)
Query: 44 NTYQAQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIF 103
NT + IL + ++ +Y I IG PP DTGSS +WV
Sbjct: 2 NTTSSVIL--TNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV---------------- 43
Query: 104 YPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLT 158
PS S Y C + + F + S+YKH L S F+S + +T
Sbjct: 44 -PSSKCSRLYTAC--VYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIIT 95
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 47 QAQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPS 106
+ ++ +D++N +FY +G DTGS+ LWV C ++ S
Sbjct: 2 ENDVIELDDVANLMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSIGCSTKHLYDSS 61
Query: 107 RSSSY 111
+S SY
Sbjct: 62 KSKSY 66
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 21/115 (18%)
Query: 44 NTYQAQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIF 103
NT + IL + ++ +Y I IG PP DTGSS +WV
Sbjct: 5 NTTSSVIL--TNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV---------------- 46
Query: 104 YPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLT 158
PS S Y C + + F + S+YKH L S F+S + +T
Sbjct: 47 -PSSKCSRLYTAC--VYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIIT 98
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 21/115 (18%)
Query: 44 NTYQAQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIF 103
NT + IL + ++ +Y I IG PP DTGSS +WV
Sbjct: 1 NTTSSVIL--TNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV---------------- 42
Query: 104 YPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLT 158
PS S Y C + + F + S+YKH L S F+S + +T
Sbjct: 43 -PSSKCSRLYTAC--VYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIIT 94
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 21/115 (18%)
Query: 44 NTYQAQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIF 103
NT + IL + ++ +Y I IG PP DTGSS +WV
Sbjct: 5 NTTSSVIL--TNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV---------------- 46
Query: 104 YPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLT 158
PS S Y C + + F + S+YKH L S F+S + +T
Sbjct: 47 -PSSKCSRLYTAC--VYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIIT 98
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 21/115 (18%)
Query: 44 NTYQAQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIF 103
NT + IL + ++ +Y I IG PP DTGSS +WV
Sbjct: 5 NTTSSVIL--TNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV---------------- 46
Query: 104 YPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLT 158
PS S Y C + + F + S+YKH L S F+S + +T
Sbjct: 47 -PSSKCSRLYTAC--VYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIIT 98
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 55 DISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSY 111
D N +FY + +G P +DTGS+ LWV C ++ S+S +Y
Sbjct: 134 DFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY 190
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 21/115 (18%)
Query: 44 NTYQAQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIF 103
NT + IL + ++ +Y I IG PP DTGSS +WV
Sbjct: 5 NTTSSVIL--TNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWV---------------- 46
Query: 104 YPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLT 158
PS S Y C + + F + S+YKH L S F+S + +T
Sbjct: 47 -PSSKCSRLYTAC--VYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIIT 98
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 55 DISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSY 111
D N +FY + +G P +DTGS+ LWV C ++ S+S +Y
Sbjct: 61 DFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY 117
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 65 ISIGQPPVPQFTAMDTGSSLLWV-----HCYPCRDCSPQLGTIFYPSRSSSY 111
+S+G Q +DTGSS WV C DC GT F PS SSSY
Sbjct: 18 VSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSS-GT-FTPSSSSSY 67
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 274 GGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPT 333
G G ++DSGT +T+ + L D+ RL + R D+ Y ++D G T
Sbjct: 214 GDGALLDSGTTLTYFPSDFAAQLADKAGARLV-QVAR-----DQYLYFIDCNTDTSG--T 265
Query: 334 VRFHFRGGAKLALEKDSMFYQPRPDAFCM 362
F+F GAK+ + YQ D C+
Sbjct: 266 TVFNFGNGAKITVPNTEYVYQ-NGDGTCL 293
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 58 NSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCS 96
NS +Y I IG PP DTGS+ LWV P CS
Sbjct: 14 NSQYYGEIGIGTPPQTFKVIFDTGSANLWV---PSTKCS 49
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 19/101 (18%)
Query: 58 NSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCD 117
++ +Y I IG PP DTGSS +WV PS S Y C
Sbjct: 10 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWV-----------------PSSKCSRLYTAC- 51
Query: 118 SEHCRYFPYARCSAYKHRCIYTQLYLIGPETSVFVSTEQLT 158
+ + F + S+YKH L S F+S + +T
Sbjct: 52 -VYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIIT 91
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 52 PSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSY 111
P +S ++ I IG PP DTGSS LWV C+ + F P +SS++
Sbjct: 4 PLTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTF 63
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 54 NDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSY 111
ND++N ++Y IG DTGS+ LWV C + ++ ++S +Y
Sbjct: 16 NDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTY 73
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 55 DISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSY 111
D N +FY + +G P +DTGS+ LWV C ++ S+S +Y
Sbjct: 12 DFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY 68
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 33/149 (22%)
Query: 214 LHDPDYLHNKLILG-------DGAIIDEGDATPLQFIDGHYYITLEAISVDGRMLDINPN 266
L+ P+ ++I G G++I A P+ D ITL ++ G+ +IN N
Sbjct: 159 LNSPNAATGQIIFGGVDKAKYSGSLI----AVPVTS-DRELRITLNSLKAVGK--NINGN 211
Query: 267 IFKRDDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSS 326
I V++DSGT +T+L ++ + + D L+ + H +
Sbjct: 212 I--------DVLLDSGTTITYLQQDVAQDIIDAFQAELKSDGQG----------HTFYVT 253
Query: 327 DLKGFPTVRFHFRGGAKLALEKDSMFYQP 355
D + TV F+F AK+++ S F P
Sbjct: 254 DCQTSGTVDFNFDNNAKISVPA-SEFTAP 281
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 55 DISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSY 111
D N +FY + +G P +DTGS+ LWV C ++ S+S +Y
Sbjct: 12 DFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY 68
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 55 DISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSY 111
D N +FY + +G P +DTGS+ LWV C ++ S+S +Y
Sbjct: 10 DFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY 66
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 55 DISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSY 111
D N +FY + +G P +DTGS+ LWV C ++ S+S +Y
Sbjct: 10 DFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTY 66
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 47 QAQILPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPC 92
+ I+ + N+ ++ I +G PP DTGSS LWV C
Sbjct: 40 EGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKC 85
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 51 LPSNDISNSLFYVNISIGQPPVPQFTAM-DTGSSLLWVHCYPCRDCSPQLGTIFYPSRSS 109
+P + +S ++ I +G PP +FT + DTGSS WV C+ + + F P +SS
Sbjct: 6 VPLTNYLDSQYFGKIYLGTPP-QEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSS 64
Query: 110 SY 111
++
Sbjct: 65 TF 66
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 51 LPSNDISNSLFYVNISIGQPPVPQFTAM-DTGSSLLWVHCYPCRDCSPQLGTIFYPSRSS 109
+P + +S ++ I +G PP +FT + DTGSS WV C+ + + F P +SS
Sbjct: 6 VPLTNYLDSQYFGKIYLGTPP-QEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSS 64
Query: 110 SY 111
++
Sbjct: 65 TF 66
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 61 FYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFY-PSRSSSY 111
+ + +SIG P + DTGSS WV C + +G F+ PS SS++
Sbjct: 20 YAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTF 71
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
Length = 97
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 58 NSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCR 93
++ +Y I IG PP DTGSS LWV C+
Sbjct: 12 DAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCK 47
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 114/296 (38%), Gaps = 57/296 (19%)
Query: 47 QAQILPSNDISNSLFYVN-ISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYP 105
A ++P +++L YV I+ P V + +D G LWV DC
Sbjct: 7 SALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWV------DCDQNY------ 54
Query: 106 SRSSSYAYVPCDSEHCRY---------FPYARCSAYKHRC-IYTQLYLIGPETSVFVSTE 155
SS+Y V C + C F R + C ++ + +I T V+ +
Sbjct: 55 -VSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAED 113
Query: 156 QLTFKNTDEST----IHVQDVVFGCGFSTNRNFKFSGIFGL-GIGRXXXXXXXXXXXXY- 209
++ ++TD S+ + V +F C ++ SG+ G+ G+GR +
Sbjct: 114 VVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFS 173
Query: 210 -------CI-GSL---------HDPDYLHNKLILGDGA-----IIDEGDATPLQFIDG-- 245
C+ GS +DP +I+ D ++ +T G
Sbjct: 174 FKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEP 233
Query: 246 --HYYITLEAISVDGRMLDINPNIFKRDDSG-GGVMIDSGTDVTWLVKEAYEALRD 298
Y+I +++I ++ +++ +N ++ +G GG I + T L Y+A+ +
Sbjct: 234 SVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTE 289
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 114/296 (38%), Gaps = 57/296 (19%)
Query: 47 QAQILPSNDISNSLFYVN-ISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYP 105
A ++P +++L YV I+ P V + +D G LWV DC
Sbjct: 7 SALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWV------DCDQNY------ 54
Query: 106 SRSSSYAYVPCDSEHCRY---------FPYARCSAYKHRC-IYTQLYLIGPETSVFVSTE 155
SS+Y V C + C F R + C ++ + +I T V+ +
Sbjct: 55 -VSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAED 113
Query: 156 QLTFKNTDEST----IHVQDVVFGCGFSTNRNFKFSGIFGL-GIGRXXXXXXXXXXXXY- 209
++ ++TD S+ + V +F C ++ SG+ G+ G+GR +
Sbjct: 114 VVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFS 173
Query: 210 -------CI-GSL---------HDPDYLHNKLILGDGA-----IIDEGDATPLQFIDG-- 245
C+ GS +DP +I+ D ++ +T G
Sbjct: 174 FKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEP 233
Query: 246 --HYYITLEAISVDGRMLDINPNIFKRDDSG-GGVMIDSGTDVTWLVKEAYEALRD 298
Y+I +++I ++ +++ +N ++ +G GG I + T L Y+A+ +
Sbjct: 234 SVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTE 289
>pdb|1UB2|A Chain A, Crystal Structure Of Catalase-Peroxidase From
Synechococcus Pcc 7942
Length = 720
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 313 SWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPDAFCMAVNPASINNR 372
SW D + Y G ++ + G T F F EKD +++ P + F + NP N+R
Sbjct: 146 SWADLIAYAGTIAYESMGLKTFGFAFGREDIWHPEKD-IYWGPEKEWFPPSTNP---NSR 201
Query: 373 YV 374
Y
Sbjct: 202 YT 203
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 61 FYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFY-PSRSSSY 111
+ + +SIG P DTGSS WV C +G+ F+ PS SS++
Sbjct: 20 YAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRFFDPSASSTF 71
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 61 FYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSY 111
++ I IG P DTGSS LWV C + F P SS+Y
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTY 64
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 61 FYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSY 111
++ I IG P DTGSS LWV C + F P SS+Y
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTY 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,711,507
Number of Sequences: 62578
Number of extensions: 536324
Number of successful extensions: 981
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 914
Number of HSP's gapped (non-prelim): 76
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)