Query 038667
Match_columns 411
No_of_seqs 205 out of 1665
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 13:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 7.6E-75 1.6E-79 576.7 42.2 392 1-408 29-431 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 3.3E-58 7.2E-63 454.9 35.3 338 55-406 41-397 (398)
3 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.3E-54 2.8E-59 419.2 30.1 294 59-406 2-326 (326)
4 cd05472 cnd41_like Chloroplast 100.0 5.9E-54 1.3E-58 410.1 33.0 285 60-405 1-299 (299)
5 PTZ00165 aspartyl protease; Pr 100.0 6.8E-54 1.5E-58 428.6 33.8 307 51-408 111-451 (482)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 1.1E-53 2.4E-58 413.0 32.6 296 56-402 2-325 (325)
7 cd05478 pepsin_A Pepsin A, asp 100.0 9.3E-54 2E-58 412.0 31.9 295 53-402 3-317 (317)
8 cd05489 xylanase_inhibitor_I_l 100.0 1.2E-53 2.7E-58 415.8 32.8 316 67-403 2-361 (362)
9 cd05486 Cathespin_E Cathepsin 100.0 3.1E-53 6.8E-58 408.1 30.0 290 61-402 1-316 (316)
10 cd05477 gastricsin Gastricsins 100.0 2.6E-52 5.6E-57 402.2 32.5 294 58-403 1-318 (318)
11 cd06098 phytepsin Phytepsin, a 100.0 3.3E-52 7.2E-57 400.9 31.7 287 55-402 5-317 (317)
12 cd05488 Proteinase_A_fungi Fun 100.0 3.5E-52 7.5E-57 401.4 30.8 292 55-402 5-320 (320)
13 cd05485 Cathepsin_D_like Cathe 100.0 7.1E-52 1.5E-56 400.5 31.8 297 54-402 5-329 (329)
14 cd05487 renin_like Renin stimu 100.0 8.8E-52 1.9E-56 399.6 32.4 297 55-403 3-326 (326)
15 PTZ00147 plasmepsin-1; Provisi 100.0 8E-51 1.7E-55 403.6 33.8 295 52-404 131-450 (453)
16 cd05473 beta_secretase_like Be 100.0 5E-51 1.1E-55 400.1 30.6 314 59-410 2-352 (364)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 5.7E-50 1.2E-54 396.7 34.0 293 52-404 130-449 (450)
18 cd05475 nucellin_like Nucellin 100.0 1.7E-50 3.8E-55 380.9 28.4 255 59-405 1-273 (273)
19 cd05476 pepsin_A_like_plant Ch 100.0 3.3E-49 7.2E-54 370.8 28.2 252 60-405 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 2.3E-48 5E-53 367.7 25.2 256 61-402 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 1.5E-45 3.2E-50 351.7 25.8 263 60-403 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 3.1E-46 6.8E-51 359.6 20.3 293 60-403 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 3.9E-44 8.5E-49 339.3 27.2 261 61-402 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 8.5E-33 1.8E-37 239.9 14.8 157 61-228 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 7E-28 1.5E-32 208.9 14.5 155 246-402 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 9E-24 2E-28 171.0 12.6 104 63-192 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.1 9.9E-06 2.1E-10 63.1 7.4 94 59-194 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.9 0.0061 1.3E-07 49.8 8.6 96 57-194 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.3 0.039 8.5E-07 41.9 9.2 89 63-193 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.9 0.26 5.7E-06 40.3 9.3 34 57-92 13-46 (124)
31 cd05479 RP_DDI RP_DDI; retrope 92.8 0.77 1.7E-05 37.5 8.4 24 377-400 101-124 (124)
32 PF08284 RVP_2: Retroviral asp 92.0 0.25 5.4E-06 41.2 4.5 27 377-403 106-132 (135)
33 cd05484 retropepsin_like_LTR_2 91.9 0.19 4E-06 38.6 3.4 28 61-90 1-28 (91)
34 PF13975 gag-asp_proteas: gag- 88.6 0.89 1.9E-05 33.2 4.5 36 56-93 4-39 (72)
35 cd06095 RP_RTVL_H_like Retrope 88.4 3.9 8.4E-05 30.9 8.1 25 64-90 2-26 (86)
36 TIGR03698 clan_AA_DTGF clan AA 87.3 3.7 8.1E-05 32.6 7.6 22 377-398 86-107 (107)
37 PF00077 RVP: Retroviral aspar 84.9 1.4 3E-05 34.2 4.1 28 62-91 7-34 (100)
38 COG3577 Predicted aspartyl pro 83.8 3.9 8.6E-05 36.2 6.5 78 57-173 102-179 (215)
39 PF13650 Asp_protease_2: Aspar 81.0 2 4.4E-05 32.2 3.5 22 275-296 10-31 (90)
40 PF13975 gag-asp_proteas: gag- 77.4 4.7 0.0001 29.4 4.3 22 275-296 20-41 (72)
41 cd05484 retropepsin_like_LTR_2 77.2 3.5 7.6E-05 31.4 3.8 30 253-296 4-33 (91)
42 PF09668 Asp_protease: Asparty 75.9 11 0.00023 30.9 6.3 30 253-296 28-57 (124)
43 PF11925 DUF3443: Protein of u 75.8 7.5 0.00016 37.7 6.2 54 140-196 82-150 (370)
44 TIGR02281 clan_AA_DTGA clan AA 73.9 4.4 9.6E-05 32.9 3.7 37 243-296 8-44 (121)
45 cd05483 retropepsin_like_bacte 73.5 6.5 0.00014 29.7 4.5 22 275-296 14-35 (96)
46 cd05482 HIV_retropepsin_like R 73.1 4.8 0.0001 30.7 3.4 25 64-90 2-26 (87)
47 cd06094 RP_Saci_like RP_Saci_l 69.6 11 0.00023 28.8 4.6 22 274-295 9-30 (89)
48 cd06095 RP_RTVL_H_like Retrope 65.9 8.2 0.00018 29.1 3.4 22 275-296 10-31 (86)
49 PF12384 Peptidase_A2B: Ty3 tr 56.4 80 0.0017 27.1 7.9 23 275-297 46-68 (177)
50 PF12384 Peptidase_A2B: Ty3 tr 53.4 19 0.0004 30.9 3.7 29 62-90 34-62 (177)
51 PF00077 RVP: Retroviral aspar 51.7 14 0.00031 28.4 2.7 17 275-291 17-33 (100)
52 cd05481 retropepsin_like_LTR_1 47.6 23 0.00051 27.1 3.3 23 275-297 11-33 (93)
53 PF02160 Peptidase_A3: Caulifl 45.9 61 0.0013 28.8 5.9 25 377-402 93-117 (201)
54 KOG0012 DNA damage inducible p 42.7 1.8E+02 0.0039 28.3 8.8 95 276-404 248-347 (380)
55 PF09668 Asp_protease: Asparty 42.1 14 0.00031 30.1 1.3 37 57-95 21-57 (124)
56 COG5550 Predicted aspartyl pro 35.7 24 0.00052 28.6 1.7 22 377-398 96-117 (125)
57 TIGR03698 clan_AA_DTGF clan AA 35.3 48 0.001 26.1 3.4 26 63-88 2-32 (107)
58 COG3577 Predicted aspartyl pro 33.6 66 0.0014 28.7 4.1 37 243-296 102-138 (215)
59 PF15409 PH_8: Pleckstrin homo 32.0 88 0.0019 23.9 4.2 29 274-302 56-87 (89)
60 PF08284 RVP_2: Retroviral asp 23.2 1.2E+02 0.0025 25.1 3.8 30 59-90 20-49 (135)
61 cd05475 nucellin_like Nucellin 22.8 96 0.0021 28.8 3.6 32 59-90 157-194 (273)
62 cd06098 phytepsin Phytepsin, a 21.2 1E+02 0.0023 29.3 3.6 32 59-90 188-227 (317)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=7.6e-75 Score=576.72 Aligned_cols=392 Identities=36% Similarity=0.591 Sum_probs=323.6
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCcceeccccccCCCceEEEEEEeCCCCceEEEEEeC
Q 038667 1 LIHRDSILSPYNNPNENPAHRVQRGINISIARLAYLQEKIRSHNTYQAQILPSNDISNSLFYVNISIGQPPVPQFTAMDT 80 (411)
Q Consensus 1 ~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~iGtP~q~~~~i~DT 80 (411)
|+||+++|||+++++.++.++++++++|+++|++++.++..... .+.. +. ..++++|+++|.||||||++.|++||
T Consensus 29 l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~~~-~~-~~~~~~Y~v~i~iGTPpq~~~vi~DT 104 (431)
T PLN03146 29 LIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPN--DPQS-DL-ISNGGEYLMNISIGTPPVPILAIADT 104 (431)
T ss_pred EEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCC--cccc-Cc-ccCCccEEEEEEcCCCCceEEEEECC
Confidence 68999999999988888899999999999999999965532211 1111 11 24678999999999999999999999
Q ss_pred CCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCC-CCCCCCCcceeeEeeCCCCeeeeeEEEEEEEe
Q 038667 81 GSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYA-RCSAYKHRCIYTQLYLIGPETSVFVSTEQLTF 159 (411)
Q Consensus 81 GSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~-~C~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~ 159 (411)
||+++||+|.+|..|+.+.++.|||++|+||+.++|+++.|..+... .|... +.|.|.+.|+||+.+.|.+++|+|+|
T Consensus 105 GS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~-~~c~y~i~Ygdgs~~~G~l~~Dtltl 183 (431)
T PLN03146 105 GSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE-NTCTYSYSYGDGSFTKGNLAVETLTI 183 (431)
T ss_pred CCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC-CCCeeEEEeCCCCceeeEEEEEEEEe
Confidence 99999999999999998889999999999999999999999877643 47554 57999999999998899999999999
Q ss_pred eCCCCCceeeecEEEEeEeeec--cCCCcceEEecCCCCCchHHhh----cCceEEecCCCCCCCCCCcceecCCCCCCC
Q 038667 160 KNTDESTIHVQDVVFGCGFSTN--RNFKFSGIFGLGIGRSSLVSQL----NSSFSYCIGSLHDPDYLHNKLILGDGAIID 233 (411)
Q Consensus 160 ~~~~~~~~~~~~~~fg~~~~~~--~~~~~~GilGLg~~~~S~~~ql----~~~FS~~l~~~~~~~~~~g~l~fGg~~~~~ 233 (411)
++..+..++++++.|||++.+. +...++||||||+++.|+++|| .++|||||.+..++....|.|+||+.++..
T Consensus 184 g~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~ 263 (431)
T PLN03146 184 GSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSNGTSKINFGTNAIVS 263 (431)
T ss_pred ccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCCCCCCCcceEEeCCccccC
Confidence 8755445678999999999765 5445899999999999999998 468999998654333345899999965431
Q ss_pred -C-Cccccccc--CCCceEEEeeEEEECCeEEecCCCcccccCCCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCC
Q 038667 234 -E-GDATPLQF--IDGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQM 309 (411)
Q Consensus 234 -~-~~~~pl~~--~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~ 309 (411)
. ..|+||.. ++.+|+|.|++|+||++++.+++..|. ..+.+++||||||++++||+++|++|+++|.+++.+...
T Consensus 264 ~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~-~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~ 342 (431)
T PLN03146 264 GSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKN-GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERV 342 (431)
T ss_pred CCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccc-cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccC
Confidence 2 35899952 357999999999999999988766654 233468999999999999999999999999998853111
Q ss_pred cCCCCCCCCccccccCCCccCCCeEEEEEcCCcEEEEcCCceEEEcCCCeEEEEEEeCCCCCCcccceeeehhhcceeEE
Q 038667 310 RSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNV 389 (411)
Q Consensus 310 ~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~IlG~~fl~~~yv 389 (411)
.......++|+.... ...+|+|+|+|+ |+++.|++++|++....+.+|+++....+ .+|||+.|||++||
T Consensus 343 ~~~~~~~~~C~~~~~---~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~~~~Cl~~~~~~~------~~IlG~~~q~~~~v 412 (431)
T PLN03146 343 SDPQGLLSLCYSSTS---DIKLPIITAHFT-GADVKLQPLNTFVKVSEDLVCFAMIPTSS------IAIFGNLAQMNFLV 412 (431)
T ss_pred CCCCCCCCccccCCC---CCCCCeEEEEEC-CCeeecCcceeEEEcCCCcEEEEEecCCC------ceEECeeeEeeEEE
Confidence 111112279996321 247999999998 99999999999998877789999875422 39999999999999
Q ss_pred EEECCCCEEEEecCCCCCc
Q 038667 390 GYDIGRKQKTFQRMDCEVL 408 (411)
Q Consensus 390 vfD~~~~riGfa~~~c~~~ 408 (411)
|||++++|||||+.+|+++
T Consensus 413 vyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 413 GYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred EEECCCCEEeeecCCcCcC
Confidence 9999999999999999975
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-58 Score=454.93 Aligned_cols=338 Identities=35% Similarity=0.595 Sum_probs=277.5
Q ss_pred cCCCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCC-CCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCC
Q 038667 55 DISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCR-DCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYK 133 (411)
Q Consensus 55 ~~~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~-~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~ 133 (411)
....++|+++|.||||||.|.|+|||||+++||+|..|. .|..+..+.|||++|+||+.+.|.++.|...... |...
T Consensus 41 ~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-~~~~- 118 (398)
T KOG1339|consen 41 SYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS-CSPN- 118 (398)
T ss_pred cccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC-cccC-
Confidence 456789999999999999999999999999999999999 7987666679999999999999999999998866 4333
Q ss_pred CcceeeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec---cC-CCcceEEecCCCCCchHHhh------
Q 038667 134 HRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN---RN-FKFSGIFGLGIGRSSLVSQL------ 203 (411)
Q Consensus 134 ~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~---~~-~~~~GilGLg~~~~S~~~ql------ 203 (411)
..|.|.+.|++|+.+.|.+++|+|+|++.+ .+.++++.|||+..+. .. ..++||||||++.+|+.+|+
T Consensus 119 ~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~ 196 (398)
T KOG1339|consen 119 SSCPYSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYNA 196 (398)
T ss_pred CcCceEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccCC
Confidence 899999999997779999999999999742 2566779999999885 12 56899999999999999997
Q ss_pred cCceEEecCCCCCCCCCCcceecCCCCCC-CCC--cccccccCC-CceEEEeeEEEECCeEEecCCCcccccCCCCcEEE
Q 038667 204 NSSFSYCIGSLHDPDYLHNKLILGDGAII-DEG--DATPLQFID-GHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMI 279 (411)
Q Consensus 204 ~~~FS~~l~~~~~~~~~~g~l~fGg~~~~-~~~--~~~pl~~~~-~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~~~~ii 279 (411)
.++||+||.+...+....|.|+||+.+.. +.+ .|+||.... .+|.|.+.+|+|+++. .+.+..+... ..++||
T Consensus 197 ~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~~~~~~~~--~~~~ii 273 (398)
T KOG1339|consen 197 INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIGSSLFCTD--GGGAII 273 (398)
T ss_pred ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCCcceEecC--CCCEEE
Confidence 34599999987644334699999996644 333 599995333 4999999999999987 6665555332 589999
Q ss_pred ecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcCCcEEEEcCCceEEEcCCCe
Q 038667 280 DSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPDA 359 (411)
Q Consensus 280 DSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~ 359 (411)
||||++++||.++|++|.++|.+.++ ...........|+...... ..+|.|+|+|++|+.|.|++++|+++...+.
T Consensus 274 DSGTs~t~lp~~~y~~i~~~~~~~~~--~~~~~~~~~~~C~~~~~~~--~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~ 349 (398)
T KOG1339|consen 274 DSGTSLTYLPTSAYNALREAIGAEVS--VVGTDGEYFVPCFSISTSG--VKLPDITFHFGGGAVFSLPPKNYLVEVSDGG 349 (398)
T ss_pred ECCcceeeccHHHHHHHHHHHHhhee--ccccCCceeeecccCCCCc--ccCCcEEEEECCCcEEEeCccceEEEECCCC
Confidence 99999999999999999999977541 0011111227999654221 3599999999988999999999999976554
Q ss_pred E-EEEEEeCCCCCCcccceeeehhhcceeEEEEECC-CCEEEEec--CCCC
Q 038667 360 F-CMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIG-RKQKTFQR--MDCE 406 (411)
Q Consensus 360 ~-C~~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~-~~riGfa~--~~c~ 406 (411)
. |++++...... +.||||+.|||+++++||+. ++|||||+ ..|+
T Consensus 350 ~~Cl~~~~~~~~~---~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 350 GVCLAFFNGMDSG---PLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CceeeEEecCCCC---ceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 4 99988765442 24999999999999999999 99999999 7775
No 3
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.3e-54 Score=419.21 Aligned_cols=294 Identities=23% Similarity=0.440 Sum_probs=237.5
Q ss_pred ceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCCCccee
Q 038667 59 SLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIY 138 (411)
Q Consensus 59 ~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~ 138 (411)
+.|+++|.||||+|++.|+|||||+++||+|..|..|..+.++.|||++|+|++.+.|++..|... ..|.. +.|.|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~--~~~~~--~~~~~ 77 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYC--LSCLN--NKCEY 77 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCcccccc--CcCCC--CcCcE
Confidence 589999999999999999999999999999999999987778999999999999999999999542 24543 67999
Q ss_pred eEeeCCCCeeeeeEEEEEEEeeCCCCC--ceeeecEEEEeEeeec--c-CCCcceEEecCCCCCc--------hHHhh--
Q 038667 139 TQLYLIGPETSVFVSTEQLTFKNTDES--TIHVQDVVFGCGFSTN--R-NFKFSGIFGLGIGRSS--------LVSQL-- 203 (411)
Q Consensus 139 ~~~Y~~gs~~~G~~~~D~v~~~~~~~~--~~~~~~~~fg~~~~~~--~-~~~~~GilGLg~~~~S--------~~~ql-- 203 (411)
.+.|++|+.+.|.+++|+|+|++.... .....++.|||+.... + ....+||||||+...+ +..|.
T Consensus 78 ~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~ 157 (326)
T cd06096 78 SISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRPK 157 (326)
T ss_pred EEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhccc
Confidence 999999987899999999999873211 0112357899998765 2 3458999999998643 11231
Q ss_pred ---cCceEEecCCCCCCCCCCcceecCCCCCC-C------------CCcccccccCCCceEEEeeEEEECCeEEecCCCc
Q 038667 204 ---NSSFSYCIGSLHDPDYLHNKLILGDGAII-D------------EGDATPLQFIDGHYYITLEAISVDGRMLDINPNI 267 (411)
Q Consensus 204 ---~~~FS~~l~~~~~~~~~~g~l~fGg~~~~-~------------~~~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~ 267 (411)
.++||+||.+. .|.|+|||.+.. + ...|+|+. ...+|.|.+++|+|+++.....
T Consensus 158 ~~~~~~FS~~l~~~------~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~-~~~~y~v~l~~i~vg~~~~~~~--- 227 (326)
T cd06096 158 LKKDKIFSICLSED------GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPIT-RKYYYYVKLEGLSVYGTTSNSG--- 227 (326)
T ss_pred ccCCceEEEEEcCC------CeEEEECccChhhhcccccccccccCCceEEecc-CCceEEEEEEEEEEccccccee---
Confidence 28999999862 388999996532 1 23588883 4589999999999998861111
Q ss_pred ccccCCCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcCCcEEEEc
Q 038667 268 FKRDDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALE 347 (411)
Q Consensus 268 ~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~ 347 (411)
......+||||||++++||++++++|.+++ |+|+|+|++|++++|+
T Consensus 228 ---~~~~~~aivDSGTs~~~lp~~~~~~l~~~~-------------------------------P~i~~~f~~g~~~~i~ 273 (326)
T cd06096 228 ---NTKGLGMLVDSGSTLSHFPEDLYNKINNFF-------------------------------PTITIIFENNLKIDWK 273 (326)
T ss_pred ---cccCCCEEEeCCCCcccCCHHHHHHHHhhc-------------------------------CcEEEEEcCCcEEEEC
Confidence 012578999999999999999998887655 6999999878999999
Q ss_pred CCceEEEcCCCeEEEEEEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEecCCCC
Q 038667 348 KDSMFYQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMDCE 406 (411)
Q Consensus 348 ~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~~c~ 406 (411)
|++|++......+|+.+.... +.+|||++|||++|+|||++++|||||+++|.
T Consensus 274 p~~y~~~~~~~~c~~~~~~~~------~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 274 PSSYLYKKESFWCKGGEKSVS------NKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred HHHhccccCCceEEEEEecCC------CceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 999999875555556554332 13999999999999999999999999999995
No 4
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=5.9e-54 Score=410.14 Aligned_cols=285 Identities=34% Similarity=0.569 Sum_probs=231.9
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCCCcceee
Q 038667 60 LFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYT 139 (411)
Q Consensus 60 ~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~~ 139 (411)
+|+++|.||||||++.|+|||||+++||+|.+| |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c-------------------------------------------~~~~ 37 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC-------------------------------------------CLYQ 37 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-------------------------------------------Ceee
Confidence 599999999999999999999999999987765 2788
Q ss_pred EeeCCCCeeeeeEEEEEEEeeCCCCCce-eeecEEEEeEeeec--cCCCcceEEecCCCCCchHHhh----cCceEEecC
Q 038667 140 QLYLIGPETSVFVSTEQLTFKNTDESTI-HVQDVVFGCGFSTN--RNFKFSGIFGLGIGRSSLVSQL----NSSFSYCIG 212 (411)
Q Consensus 140 ~~Y~~gs~~~G~~~~D~v~~~~~~~~~~-~~~~~~fg~~~~~~--~~~~~~GilGLg~~~~S~~~ql----~~~FS~~l~ 212 (411)
+.|++|+.+.|.+++|+|+|++ . .++++.|||+.... +. .++||||||+...|+++|+ +++||+||.
T Consensus 38 i~Yg~Gs~~~G~~~~D~v~ig~-----~~~~~~~~Fg~~~~~~~~~~-~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~ 111 (299)
T cd05472 38 VSYGDGSYTTGDLATDTLTLGS-----SDVVPGFAFGCGHDNEGLFG-GAAGLLGLGRGKLSLPSQTASSYGGVFSYCLP 111 (299)
T ss_pred eEeCCCceEEEEEEEEEEEeCC-----CCccCCEEEECCccCCCccC-CCCEEEECCCCcchHHHHhhHhhcCceEEEcc
Confidence 9999999779999999999987 4 78899999998775 33 5899999999999999997 589999998
Q ss_pred CCCCCCCCCcceecCCCCCC-CCCcccccccC---CCceEEEeeEEEECCeEEecCCCcccccCCCCcEEEecccccccc
Q 038667 213 SLHDPDYLHNKLILGDGAII-DEGDATPLQFI---DGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWL 288 (411)
Q Consensus 213 ~~~~~~~~~g~l~fGg~~~~-~~~~~~pl~~~---~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~~~~iiDSGTt~~~l 288 (411)
+.. ....|+|+|||.+.. ....|+|+... ..+|.|+|++|+|+++.+.+++... ....+||||||++++|
T Consensus 112 ~~~--~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~----~~~~~ivDSGTt~~~l 185 (299)
T cd05472 112 DRS--SSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASF----GAGGVIIDSGTVITRL 185 (299)
T ss_pred CCC--CCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCcccc----CCCCeEEeCCCcceec
Confidence 743 123589999997754 24469999533 4699999999999999887543211 2468999999999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCCcCCCCCC--CCccccccCCCccCCCeEEEEEcCCcEEEEcCCceEEEc-CCCeEEEEEE
Q 038667 289 VKEAYEALRDEVMIRLEGEQMRSYSWPD--KLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQP-RPDAFCMAVN 365 (411)
Q Consensus 289 p~~~~~~l~~~l~~~~~g~~~~~~~~~~--~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~-~~~~~C~~~~ 365 (411)
|+++|++|.+++.+++.. ........ ..|++... .....+|+|+|+|++|++++|++++|++.. ..+..|+++.
T Consensus 186 p~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~C~~~~~-~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~ 262 (299)
T cd05472 186 PPSAYAALRDAFRAAMAA--YPRAPGFSILDTCYDLSG-FRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFA 262 (299)
T ss_pred CHHHHHHHHHHHHHHhcc--CCCCCCCCCCCccCcCCC-CcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEe
Confidence 999999999999887642 11111111 35985432 122479999999987899999999999843 4567899887
Q ss_pred eCCCCCCcccceeeehhhcceeEEEEECCCCEEEEecCCC
Q 038667 366 PASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMDC 405 (411)
Q Consensus 366 ~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~~c 405 (411)
..... .+.+|||+.|||++|+|||++++|||||+++|
T Consensus 263 ~~~~~---~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 263 GTSDD---GGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCCC---CCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 65322 12599999999999999999999999999999
No 5
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=6.8e-54 Score=428.65 Aligned_cols=307 Identities=17% Similarity=0.298 Sum_probs=244.3
Q ss_pred cccccCCCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCC
Q 038667 51 LPSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCS 130 (411)
Q Consensus 51 ~~~~~~~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~ 130 (411)
.++.++.+.+|+++|.||||||++.|+|||||+++||+|..|..|.-+.++.|||++|+||+.+.+..
T Consensus 111 ~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~------------ 178 (482)
T PTZ00165 111 QDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD------------ 178 (482)
T ss_pred eecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC------------
Confidence 44557889999999999999999999999999999999999987222578999999999999853221
Q ss_pred CCCCcceeeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec---cC-CCcceEEecCCCCCc--------
Q 038667 131 AYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN---RN-FKFSGIFGLGIGRSS-------- 198 (411)
Q Consensus 131 ~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~---~~-~~~~GilGLg~~~~S-------- 198 (411)
....+.+.|++|+ ..|.+++|+|+|++ ++++++.||+++... |. ..+|||||||++..+
T Consensus 179 ---~~~~~~i~YGsGs-~~G~l~~DtV~ig~-----l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~ 249 (482)
T PTZ00165 179 ---ESAETYIQYGTGE-CVLALGKDTVKIGG-----LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKAL 249 (482)
T ss_pred ---ccceEEEEeCCCc-EEEEEEEEEEEECC-----EEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCC
Confidence 1225679999998 58999999999998 899999999998764 32 468999999988652
Q ss_pred -hHHhh-------cCceEEecCCCCCCCCCCcceecCCCCCC-C----CCcccccccCCCceEEEeeEEEECCeEEecCC
Q 038667 199 -LVSQL-------NSSFSYCIGSLHDPDYLHNKLILGDGAII-D----EGDATPLQFIDGHYYITLEAISVDGRMLDINP 265 (411)
Q Consensus 199 -~~~ql-------~~~FS~~l~~~~~~~~~~g~l~fGg~~~~-~----~~~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~ 265 (411)
++.+| .++||+||.+... ..|+|+|||.+.. + ...|+|+ ....+|.|.+++|+|+++.+....
T Consensus 250 p~~~~l~~qgli~~~~FS~yL~~~~~---~~G~l~fGGiD~~~~~~~g~i~~~Pv-~~~~yW~i~l~~i~vgg~~~~~~~ 325 (482)
T PTZ00165 250 PIVDNIKKQNLLKRNIFSFYMSKDLN---QPGSISFGSADPKYTLEGHKIWWFPV-ISTDYWEIEVVDILIDGKSLGFCD 325 (482)
T ss_pred CHHHHHHHcCCcccceEEEEeccCCC---CCCEEEeCCcCHHHcCCCCceEEEEc-cccceEEEEeCeEEECCEEeeecC
Confidence 34443 6899999976332 2489999996532 2 2358999 557899999999999998776531
Q ss_pred CcccccCCCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcC--C--
Q 038667 266 NIFKRDDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRG--G-- 341 (411)
Q Consensus 266 ~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~--g-- 341 (411)
.+..+|+||||+++++|.+++++|.+++.. . .+|+.. ..+|+|+|+|+| |
T Consensus 326 -------~~~~aIiDTGTSli~lP~~~~~~i~~~i~~-------~------~~C~~~------~~lP~itf~f~g~~g~~ 379 (482)
T PTZ00165 326 -------RKCKAAIDTGSSLITGPSSVINPLLEKIPL-------E------EDCSNK------DSLPRISFVLEDVNGRK 379 (482)
T ss_pred -------CceEEEEcCCCccEeCCHHHHHHHHHHcCC-------c------cccccc------ccCCceEEEECCCCCce
Confidence 257899999999999999999999998831 1 478843 378999999983 2
Q ss_pred cEEEEcCCceEEEc----CCCeEEE-EEEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEecCCCCCc
Q 038667 342 AKLALEKDSMFYQP----RPDAFCM-AVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMDCEVL 408 (411)
Q Consensus 342 ~~~~l~~~~y~~~~----~~~~~C~-~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~~c~~~ 408 (411)
++|.|+|++|+++. ..+..|+ ++.........++.||||++|||++|+|||++++|||||+++|..-
T Consensus 380 v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 380 IKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred EEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 38999999999974 3456896 4554322111234699999999999999999999999999999763
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.1e-53 Score=412.98 Aligned_cols=296 Identities=21% Similarity=0.331 Sum_probs=236.1
Q ss_pred CCCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCC----CCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCC
Q 038667 56 ISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCR----DCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSA 131 (411)
Q Consensus 56 ~~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~----~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~ 131 (411)
+.+.+|+++|.||||||++.|+|||||+++||+|..|. .| ..++.|+|++|+||+.
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C--~~~~~y~~~~SsT~~~------------------ 61 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIAC--WLHHKYNSSKSSTYVK------------------ 61 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccc--cCcCcCCcccCcceee------------------
Confidence 45889999999999999999999999999999999997 37 3578999999999988
Q ss_pred CCCcceeeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec---c-CCCcceEEecCCCCCc------hHH
Q 038667 132 YKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN---R-NFKFSGIFGLGIGRSS------LVS 201 (411)
Q Consensus 132 ~~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~---~-~~~~~GilGLg~~~~S------~~~ 201 (411)
..|.|.+.|++|+ +.|.+++|+|+|++ ++++++.|||++... + ...++||||||++..| +++
T Consensus 62 --~~~~~~i~Yg~G~-~~G~~~~D~v~~g~-----~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 133 (325)
T cd05490 62 --NGTEFAIQYGSGS-LSGYLSQDTVSIGG-----LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFD 133 (325)
T ss_pred --CCcEEEEEECCcE-EEEEEeeeEEEECC-----EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHH
Confidence 6789999999998 69999999999998 789999999998754 2 2358999999997654 334
Q ss_pred hh-------cCceEEecCCCCCCCCCCcceecCCCCC-CCCC--cccccccCCCceEEEeeEEEECCeEEecCCCccccc
Q 038667 202 QL-------NSSFSYCIGSLHDPDYLHNKLILGDGAI-IDEG--DATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRD 271 (411)
Q Consensus 202 ql-------~~~FS~~l~~~~~~~~~~g~l~fGg~~~-~~~~--~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~~ 271 (411)
+| .++||+||.+..+. ...|+|+|||.+. .+.+ .|+|+ ....+|.|++++|+|+++.....
T Consensus 134 ~l~~~g~i~~~~FS~~L~~~~~~-~~~G~l~~Gg~d~~~~~g~l~~~~~-~~~~~w~v~l~~i~vg~~~~~~~------- 204 (325)
T cd05490 134 NIMAQKLVEQNVFSFYLNRDPDA-QPGGELMLGGTDPKYYTGDLHYVNV-TRKAYWQIHMDQVDVGSGLTLCK------- 204 (325)
T ss_pred HHHhcCCCCCCEEEEEEeCCCCC-CCCCEEEECccCHHHcCCceEEEEc-CcceEEEEEeeEEEECCeeeecC-------
Confidence 44 58899999864321 2348999999653 2333 58888 45679999999999998743322
Q ss_pred CCCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCC-CCccccccCCCccCCCeEEEEEcCCcEEEEcCCc
Q 038667 272 DSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPD-KLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDS 350 (411)
Q Consensus 272 ~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~-~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~ 350 (411)
....+||||||+++++|.+++++|.+++.+. +...... .+|+.. ..+|+|+|+|+ |+.+.|+|++
T Consensus 205 -~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~------~~~~~~~~~~C~~~------~~~P~i~f~fg-g~~~~l~~~~ 270 (325)
T cd05490 205 -GGCEAIVDTGTSLITGPVEEVRALQKAIGAV------PLIQGEYMIDCEKI------PTLPVISFSLG-GKVYPLTGED 270 (325)
T ss_pred -CCCEEEECCCCccccCCHHHHHHHHHHhCCc------cccCCCEEeccccc------ccCCCEEEEEC-CEEEEEChHH
Confidence 2468999999999999999999999988431 1111222 889843 37899999997 9999999999
Q ss_pred eEEEcC--CCeEEEE-EEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEec
Q 038667 351 MFYQPR--PDAFCMA-VNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQR 402 (411)
Q Consensus 351 y~~~~~--~~~~C~~-~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~ 402 (411)
|+++.. ....|+. +..........+.||||+.|||++|+|||++++|||||+
T Consensus 271 y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 271 YILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred eEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 998763 3468975 443221111123599999999999999999999999996
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=9.3e-54 Score=411.95 Aligned_cols=295 Identities=19% Similarity=0.277 Sum_probs=240.9
Q ss_pred cccCCCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCC
Q 038667 53 SNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAY 132 (411)
Q Consensus 53 ~~~~~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~ 132 (411)
+.++.+..|+++|.||||+|++.|+|||||+++||+|..|..|..+.++.|||++|+|++.
T Consensus 3 l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~------------------- 63 (317)
T cd05478 3 LTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQS------------------- 63 (317)
T ss_pred cccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceee-------------------
Confidence 3456789999999999999999999999999999999999873335789999999999998
Q ss_pred CCcceeeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec--c--CCCcceEEecCCCCCc------hHHh
Q 038667 133 KHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN--R--NFKFSGIFGLGIGRSS------LVSQ 202 (411)
Q Consensus 133 ~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~--~--~~~~~GilGLg~~~~S------~~~q 202 (411)
..+.+.+.|++|+ +.|.+++|+|+|++ ++++++.|||++... + ...++||||||++..+ ++.|
T Consensus 64 -~~~~~~~~yg~gs-~~G~~~~D~v~ig~-----~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 136 (317)
T cd05478 64 -TGQPLSIQYGTGS-MTGILGYDTVQVGG-----ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDN 136 (317)
T ss_pred -CCcEEEEEECCce-EEEEEeeeEEEECC-----EEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHH
Confidence 6789999999998 69999999999998 889999999998664 2 2348999999987543 5666
Q ss_pred h-------cCceEEecCCCCCCCCCCcceecCCCCC-CCCC--cccccccCCCceEEEeeEEEECCeEEecCCCcccccC
Q 038667 203 L-------NSSFSYCIGSLHDPDYLHNKLILGDGAI-IDEG--DATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRDD 272 (411)
Q Consensus 203 l-------~~~FS~~l~~~~~~~~~~g~l~fGg~~~-~~~~--~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~ 272 (411)
| +++||+||.+... ..|.|+|||.+. .+.+ .|+|+ ....+|.|.+++|+|+++.+...
T Consensus 137 L~~~g~i~~~~FS~~L~~~~~---~~g~l~~Gg~d~~~~~g~l~~~p~-~~~~~w~v~l~~v~v~g~~~~~~-------- 204 (317)
T cd05478 137 MMSQGLVSQDLFSVYLSSNGQ---QGSVVTFGGIDPSYYTGSLNWVPV-TAETYWQITVDSVTINGQVVACS-------- 204 (317)
T ss_pred HHhCCCCCCCEEEEEeCCCCC---CCeEEEEcccCHHHccCceEEEEC-CCCcEEEEEeeEEEECCEEEccC--------
Confidence 5 5899999997532 248899999653 2344 58898 45789999999999999987543
Q ss_pred CCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcCCcEEEEcCCceE
Q 038667 273 SGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMF 352 (411)
Q Consensus 273 ~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~ 352 (411)
.+..+||||||++++||++++++|++++.... ........+|+.. ..+|.|+|+|+ |++++|+|++|+
T Consensus 205 ~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~-----~~~~~~~~~C~~~------~~~P~~~f~f~-g~~~~i~~~~y~ 272 (317)
T cd05478 205 GGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ-----NQNGEMVVNCSSI------SSMPDVVFTIN-GVQYPLPPSAYI 272 (317)
T ss_pred CCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-----ccCCcEEeCCcCc------ccCCcEEEEEC-CEEEEECHHHhe
Confidence 14689999999999999999999999884321 1111112799843 37899999997 999999999999
Q ss_pred EEcCCCeEEEEEEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEec
Q 038667 353 YQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQR 402 (411)
Q Consensus 353 ~~~~~~~~C~~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~ 402 (411)
... +..|+..+...+.. +.||||++|||++|+|||++++|||||+
T Consensus 273 ~~~--~~~C~~~~~~~~~~---~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 273 LQD--QGSCTSGFQSMGLG---ELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred ecC--CCEEeEEEEeCCCC---CeEEechHHhcceEEEEeCCCCEEeecC
Confidence 875 56898655443222 2499999999999999999999999996
No 8
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.2e-53 Score=415.77 Aligned_cols=316 Identities=22% Similarity=0.315 Sum_probs=249.2
Q ss_pred eCCCCce-EEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCC------------CCCCCC
Q 038667 67 IGQPPVP-QFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYA------------RCSAYK 133 (411)
Q Consensus 67 iGtP~q~-~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~------------~C~~~~ 133 (411)
+|||-.+ +.|++||||+++||+|.+ .+|+||..++|+++.|+..... .|..
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~-- 65 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN-- 65 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC--
Confidence 5788777 899999999999999975 4688999999999999866532 3433
Q ss_pred CcceeeEe-eCCCCeeeeeEEEEEEEeeCCCCCc---eeeecEEEEeEeeec---cCCCcceEEecCCCCCchHHhh---
Q 038667 134 HRCIYTQL-YLIGPETSVFVSTEQLTFKNTDEST---IHVQDVVFGCGFSTN---RNFKFSGIFGLGIGRSSLVSQL--- 203 (411)
Q Consensus 134 ~~~~~~~~-Y~~gs~~~G~~~~D~v~~~~~~~~~---~~~~~~~fg~~~~~~---~~~~~~GilGLg~~~~S~~~ql--- 203 (411)
+.|.|... |++|+.+.|.+++|+|+|+..++.. .+++++.|||++... +...++||||||++++|+++||
T Consensus 66 ~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~ 145 (362)
T cd05489 66 NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASA 145 (362)
T ss_pred CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhh
Confidence 46888655 7789888999999999998654433 478899999998763 3345899999999999999998
Q ss_pred ---cCceEEecCCCCCCCCCCcceecCCCCCC---------CCCcccccccC---CCceEEEeeEEEECCeEEecCCCcc
Q 038667 204 ---NSSFSYCIGSLHDPDYLHNKLILGDGAII---------DEGDATPLQFI---DGHYYITLEAISVDGRMLDINPNIF 268 (411)
Q Consensus 204 ---~~~FS~~l~~~~~~~~~~g~l~fGg~~~~---------~~~~~~pl~~~---~~~y~v~l~~i~v~g~~~~~~~~~~ 268 (411)
.++|||||.+.. ...|.|+||+.+.. ....|+||... ..+|+|+|++|+||++++.+++..+
T Consensus 146 ~~~~~~FS~CL~~~~---~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~ 222 (362)
T cd05489 146 FGVARKFALCLPSSP---GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLS 222 (362)
T ss_pred cCCCcceEEEeCCCC---CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhc
Confidence 278999998743 23589999996521 13469999532 4799999999999999998876655
Q ss_pred cc-cCCCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCC-CCCccccccC---CCccCCCeEEEEEcC-Cc
Q 038667 269 KR-DDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWP-DKLCYHGIMS---SDLKGFPTVRFHFRG-GA 342 (411)
Q Consensus 269 ~~-~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~-~~~C~~~~~~---~~~~~~P~i~~~f~~-g~ 342 (411)
.. ..+.+++||||||++++||+++|++|.++|.+++........... .+.|+..... .....+|+|+|+|+| |+
T Consensus 223 ~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~ 302 (362)
T cd05489 223 ANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGV 302 (362)
T ss_pred cccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCe
Confidence 32 234578999999999999999999999999988753211111111 1699964321 112579999999996 79
Q ss_pred EEEEcCCceEEEcCCCeEEEEEEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEecC
Q 038667 343 KLALEKDSMFYQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRM 403 (411)
Q Consensus 343 ~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~ 403 (411)
+++|+|++|+++...+.+|++|....... .+.||||+.|||++|++||++++|||||++
T Consensus 303 ~~~l~~~ny~~~~~~~~~Cl~f~~~~~~~--~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 303 NWTIFGANSMVQVKGGVACLAFVDGGSEP--RPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEEcCCceEEEcCCCcEEEEEeeCCCCC--CceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999999987778999987754321 235999999999999999999999999975
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=3.1e-53 Score=408.09 Aligned_cols=290 Identities=23% Similarity=0.349 Sum_probs=233.8
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCC--CCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCCCccee
Q 038667 61 FYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRD--CSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIY 138 (411)
Q Consensus 61 Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~--C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~ 138 (411)
|+++|.||||||++.|+|||||+++||+|..|.. | ..++.|||++|+|++. ..|.|
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C--~~~~~y~~~~SsT~~~--------------------~~~~~ 58 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQAC--TKHNRFQPSESSTYVS--------------------NGEAF 58 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCccc--CccceECCCCCccccc--------------------CCcEE
Confidence 8999999999999999999999999999999984 8 4678999999999988 77899
Q ss_pred eEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec---c-CCCcceEEecCCCCCc------hHHhh-----
Q 038667 139 TQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN---R-NFKFSGIFGLGIGRSS------LVSQL----- 203 (411)
Q Consensus 139 ~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~---~-~~~~~GilGLg~~~~S------~~~ql----- 203 (411)
.+.|++|+ +.|.+++|+|+|++ ++++++.|||+.... + ...++||||||++..+ ++++|
T Consensus 59 ~i~Yg~g~-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~ 132 (316)
T cd05486 59 SIQYGTGS-LTGIIGIDQVTVEG-----ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNL 132 (316)
T ss_pred EEEeCCcE-EEEEeeecEEEECC-----EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCC
Confidence 99999997 69999999999987 899999999987654 3 3468999999997655 23333
Q ss_pred --cCceEEecCCCCCCCCCCcceecCCCCCC-CCC--cccccccCCCceEEEeeEEEECCeEEecCCCcccccCCCCcEE
Q 038667 204 --NSSFSYCIGSLHDPDYLHNKLILGDGAII-DEG--DATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVM 278 (411)
Q Consensus 204 --~~~FS~~l~~~~~~~~~~g~l~fGg~~~~-~~~--~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~~~~i 278 (411)
.++||+||.+.... ...|.|+|||.++. +.+ .|+|+ ....+|.|.+++|+|+++.+... .+..+|
T Consensus 133 i~~~~FS~~L~~~~~~-~~~g~l~fGg~d~~~~~g~l~~~pi-~~~~~w~v~l~~i~v~g~~~~~~--------~~~~ai 202 (316)
T cd05486 133 VELPMFSVYMSRNPNS-ADGGELVFGGFDTSRFSGQLNWVPV-TVQGYWQIQLDNIQVGGTVIFCS--------DGCQAI 202 (316)
T ss_pred CCCCEEEEEEccCCCC-CCCcEEEEcccCHHHcccceEEEEC-CCceEEEEEeeEEEEecceEecC--------CCCEEE
Confidence 57899999864321 23489999996632 333 58998 45789999999999999876543 146899
Q ss_pred EecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCC-CCccccccCCCccCCCeEEEEEcCCcEEEEcCCceEEEc--
Q 038667 279 IDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPD-KLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQP-- 355 (411)
Q Consensus 279 iDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~-~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~-- 355 (411)
|||||++++||++++++|.+++.. ....... .+|... ..+|+|+|+|+ |++++|+|++|++..
T Consensus 203 iDTGTs~~~lP~~~~~~l~~~~~~-------~~~~~~~~~~C~~~------~~~p~i~f~f~-g~~~~l~~~~y~~~~~~ 268 (316)
T cd05486 203 VDTGTSLITGPSGDIKQLQNYIGA-------TATDGEYGVDCSTL------SLMPSVTFTIN-GIPYSLSPQAYTLEDQS 268 (316)
T ss_pred ECCCcchhhcCHHHHHHHHHHhCC-------cccCCcEEEecccc------ccCCCEEEEEC-CEEEEeCHHHeEEeccc
Confidence 999999999999999999888732 1111112 789843 37999999998 999999999999875
Q ss_pred CCCeEEEE-EEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEec
Q 038667 356 RPDAFCMA-VNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQR 402 (411)
Q Consensus 356 ~~~~~C~~-~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~ 402 (411)
..+..|+. +.........++.||||+.|||++|+|||++++|||||+
T Consensus 269 ~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 269 DGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 34568975 443221111223599999999999999999999999996
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.6e-52 Score=402.21 Aligned_cols=294 Identities=22% Similarity=0.391 Sum_probs=237.9
Q ss_pred CceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCC--CCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCCCc
Q 038667 58 NSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRD--CSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHR 135 (411)
Q Consensus 58 ~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~--C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~ 135 (411)
+..|+++|.||||||++.|+|||||+++||+|..|.. | ..++.|||++|+||+. ..
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C--~~~~~f~~~~SsT~~~--------------------~~ 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQAC--TNHTKFNPSQSSTYST--------------------NG 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccc--cccCCCCcccCCCceE--------------------CC
Confidence 4689999999999999999999999999999999986 7 4678999999999988 78
Q ss_pred ceeeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec---c-CCCcceEEecCCCC------CchHHhh--
Q 038667 136 CIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN---R-NFKFSGIFGLGIGR------SSLVSQL-- 203 (411)
Q Consensus 136 ~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~---~-~~~~~GilGLg~~~------~S~~~ql-- 203 (411)
|.|.+.|++|+ +.|.+++|+|+|++ ++++++.|||++... + ....+||||||++. .++++||
T Consensus 59 ~~~~~~Yg~Gs-~~G~~~~D~i~~g~-----~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~ 132 (318)
T cd05477 59 ETFSLQYGSGS-LTGIFGYDTVTVQG-----IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQ 132 (318)
T ss_pred cEEEEEECCcE-EEEEEEeeEEEECC-----EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHh
Confidence 89999999998 69999999999998 899999999998754 2 23579999999863 3567776
Q ss_pred -----cCceEEecCCCCCCCCCCcceecCCCCCC-CC--CcccccccCCCceEEEeeEEEECCeEEecCCCcccccCCCC
Q 038667 204 -----NSSFSYCIGSLHDPDYLHNKLILGDGAII-DE--GDATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRDDSGG 275 (411)
Q Consensus 204 -----~~~FS~~l~~~~~~~~~~g~l~fGg~~~~-~~--~~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~~ 275 (411)
.++||+||.+... ...|.|+|||.+.. +. ..|+|+ ....+|.|.+++|+|+++++.... .+.
T Consensus 133 ~g~i~~~~FS~~L~~~~~--~~~g~l~fGg~d~~~~~g~l~~~pv-~~~~~w~v~l~~i~v~g~~~~~~~-------~~~ 202 (318)
T cd05477 133 QNLLQAPIFSFYLSGQQG--QQGGELVFGGVDNNLYTGQIYWTPV-TSETYWQIGIQGFQINGQATGWCS-------QGC 202 (318)
T ss_pred cCCcCCCEEEEEEcCCCC--CCCCEEEEcccCHHHcCCceEEEec-CCceEEEEEeeEEEECCEEecccC-------CCc
Confidence 5899999987432 22489999996632 33 458998 457899999999999999875331 246
Q ss_pred cEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcCCcEEEEcCCceEEEc
Q 038667 276 GVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQP 355 (411)
Q Consensus 276 ~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~ 355 (411)
.+||||||++++||++++++|++++.+... .......+|... ..+|+|+|+|+ |+++.|++++|+...
T Consensus 203 ~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~-----~~~~~~~~C~~~------~~~p~l~~~f~-g~~~~v~~~~y~~~~ 270 (318)
T cd05477 203 QAIVDTGTSLLTAPQQVMSTLMQSIGAQQD-----QYGQYVVNCNNI------QNLPTLTFTIN-GVSFPLPPSAYILQN 270 (318)
T ss_pred eeeECCCCccEECCHHHHHHHHHHhCCccc-----cCCCEEEeCCcc------ccCCcEEEEEC-CEEEEECHHHeEecC
Confidence 799999999999999999999999954321 111112789843 36899999998 899999999999875
Q ss_pred CCCeEEE-EEEeCCCCC-CcccceeeehhhcceeEEEEECCCCEEEEecC
Q 038667 356 RPDAFCM-AVNPASINN-RYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRM 403 (411)
Q Consensus 356 ~~~~~C~-~~~~~~~~~-~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~ 403 (411)
+..|+ ++....... ...+.||||+.|||++|+|||++++|||||++
T Consensus 271 --~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 271 --NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred --CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 55796 554321100 01135999999999999999999999999985
No 11
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=3.3e-52 Score=400.89 Aligned_cols=287 Identities=22% Similarity=0.350 Sum_probs=231.7
Q ss_pred cCCCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCC---CCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCC
Q 038667 55 DISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCR---DCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSA 131 (411)
Q Consensus 55 ~~~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~---~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~ 131 (411)
++.+..|+++|.||||||++.|+|||||+++||+|..|. .|. .++.|||++|+|++.
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~------------------ 64 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYKSSKSSTYKK------------------ 64 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccc--ccCcCCcccCCCccc------------------
Confidence 577899999999999999999999999999999999996 584 678999999999988
Q ss_pred CCCcceeeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec---c-CCCcceEEecCCCCCch------HH
Q 038667 132 YKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN---R-NFKFSGIFGLGIGRSSL------VS 201 (411)
Q Consensus 132 ~~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~---~-~~~~~GilGLg~~~~S~------~~ 201 (411)
....+.+.|++|+ +.|.+++|+|+|++ .+++++.||+++... + ...++||||||++..+. ..
T Consensus 65 --~~~~~~i~Yg~G~-~~G~~~~D~v~ig~-----~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 136 (317)
T cd06098 65 --NGTSASIQYGTGS-ISGFFSQDSVTVGD-----LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWY 136 (317)
T ss_pred --CCCEEEEEcCCce-EEEEEEeeEEEECC-----EEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHH
Confidence 5678999999998 69999999999998 789999999998754 2 34689999999976543 22
Q ss_pred hh-------cCceEEecCCCCCCCCCCcceecCCCCCC-CCC--cccccccCCCceEEEeeEEEECCeEEecCCCccccc
Q 038667 202 QL-------NSSFSYCIGSLHDPDYLHNKLILGDGAII-DEG--DATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRD 271 (411)
Q Consensus 202 ql-------~~~FS~~l~~~~~~~~~~g~l~fGg~~~~-~~~--~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~~ 271 (411)
+| .++||+||.+... ....|.|+|||.++. +.+ .|+|+ ....+|.|.+++|+|+++.+....
T Consensus 137 ~l~~qg~i~~~~FS~~L~~~~~-~~~~G~l~fGg~d~~~~~g~l~~~pv-~~~~~w~v~l~~i~v~g~~~~~~~------ 208 (317)
T cd06098 137 NMVEQGLVKEPVFSFWLNRNPD-EEEGGELVFGGVDPKHFKGEHTYVPV-TRKGYWQFEMGDVLIGGKSTGFCA------ 208 (317)
T ss_pred HHHhcCCCCCCEEEEEEecCCC-CCCCcEEEECccChhhcccceEEEec-CcCcEEEEEeCeEEECCEEeeecC------
Confidence 32 5799999986432 123589999996633 344 59999 456799999999999999876432
Q ss_pred CCCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcCCcEEEEcCCce
Q 038667 272 DSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSM 351 (411)
Q Consensus 272 ~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y 351 (411)
....+||||||++++||+++++++. ...+|+.. ..+|+|+|+|+ |+.++|+|++|
T Consensus 209 -~~~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~~------~~~P~i~f~f~-g~~~~l~~~~y 263 (317)
T cd06098 209 -GGCAAIADSGTSLLAGPTTIVTQIN-----------------SAVDCNSL------SSMPNVSFTIG-GKTFELTPEQY 263 (317)
T ss_pred -CCcEEEEecCCcceeCCHHHHHhhh-----------------ccCCcccc------ccCCcEEEEEC-CEEEEEChHHe
Confidence 2468999999999999998776553 11789843 37899999997 89999999999
Q ss_pred EEEcC--CCeEEEE-EEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEec
Q 038667 352 FYQPR--PDAFCMA-VNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQR 402 (411)
Q Consensus 352 ~~~~~--~~~~C~~-~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~ 402 (411)
+++.. ....|+. +.........++.||||+.|||++|+|||++++|||||+
T Consensus 264 i~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 264 ILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 98753 3458975 433221111123599999999999999999999999996
No 12
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3.5e-52 Score=401.42 Aligned_cols=292 Identities=23% Similarity=0.350 Sum_probs=237.2
Q ss_pred cCCCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCC--CCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCC
Q 038667 55 DISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRD--CSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAY 132 (411)
Q Consensus 55 ~~~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~--C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~ 132 (411)
++.+..|+++|.||||+|++.|+|||||+++||+|..|.. | ..++.|+|++|+|++.
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C--~~~~~y~~~~Sst~~~------------------- 63 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIAC--FLHSKYDSSASSTYKA------------------- 63 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCccc--CCcceECCCCCcceee-------------------
Confidence 5678899999999999999999999999999999999985 7 4668999999999987
Q ss_pred CCcceeeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec---cC-CCcceEEecCCCCCchHH------h
Q 038667 133 KHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN---RN-FKFSGIFGLGIGRSSLVS------Q 202 (411)
Q Consensus 133 ~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~---~~-~~~~GilGLg~~~~S~~~------q 202 (411)
..|.+.+.|++|+ +.|.+++|+|+|++ +.++++.|||++... +. ..++||||||++..+... +
T Consensus 64 -~~~~~~~~y~~g~-~~G~~~~D~v~ig~-----~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 136 (320)
T cd05488 64 -NGTEFKIQYGSGS-LEGFVSQDTLSIGD-----LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYN 136 (320)
T ss_pred -CCCEEEEEECCce-EEEEEEEeEEEECC-----EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHH
Confidence 7889999999998 69999999999987 889999999998654 22 357999999998765332 2
Q ss_pred h-------cCceEEecCCCCCCCCCCcceecCCCCCC-CC--CcccccccCCCceEEEeeEEEECCeEEecCCCcccccC
Q 038667 203 L-------NSSFSYCIGSLHDPDYLHNKLILGDGAII-DE--GDATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRDD 272 (411)
Q Consensus 203 l-------~~~FS~~l~~~~~~~~~~g~l~fGg~~~~-~~--~~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~ 272 (411)
| .++||+||.+... ..|.|+|||.+.. +. ..|+|+. ...+|.|++++|+||++.+...
T Consensus 137 l~~qg~i~~~~FS~~L~~~~~---~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~vg~~~~~~~-------- 204 (320)
T cd05488 137 MINQGLLDEPVFSFYLGSSEE---DGGEATFGGIDESRFTGKITWLPVR-RKAYWEVELEKIGLGDEELELE-------- 204 (320)
T ss_pred HHhcCCCCCCEEEEEecCCCC---CCcEEEECCcCHHHcCCceEEEeCC-cCcEEEEEeCeEEECCEEeccC--------
Confidence 2 5799999997532 3489999997632 33 4589984 5679999999999999887644
Q ss_pred CCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCC-CCccccccCCCccCCCeEEEEEcCCcEEEEcCCce
Q 038667 273 SGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPD-KLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSM 351 (411)
Q Consensus 273 ~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~-~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y 351 (411)
...++|||||++++||++++++|.+++.+.. . ..... .+|.+. ..+|.|+|+|+ |+++.|+|++|
T Consensus 205 -~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~-----~-~~~~~~~~C~~~------~~~P~i~f~f~-g~~~~i~~~~y 270 (320)
T cd05488 205 -NTGAAIDTGTSLIALPSDLAEMLNAEIGAKK-----S-WNGQYTVDCSKV------DSLPDLTFNFD-GYNFTLGPFDY 270 (320)
T ss_pred -CCeEEEcCCcccccCCHHHHHHHHHHhCCcc-----c-cCCcEEeecccc------ccCCCEEEEEC-CEEEEECHHHh
Confidence 4689999999999999999999988884221 1 11111 688843 37899999998 89999999999
Q ss_pred EEEcCCCeEEEEEEeCCCCC-CcccceeeehhhcceeEEEEECCCCEEEEec
Q 038667 352 FYQPRPDAFCMAVNPASINN-RYVNFSLIGMMAQQFYNVGYDIGRKQKTFQR 402 (411)
Q Consensus 352 ~~~~~~~~~C~~~~~~~~~~-~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~ 402 (411)
+++. +..|+..+...+.. ..++.||||+.|||++|+|||++++|||||+
T Consensus 271 ~~~~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 271 TLEV--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred eecC--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 9864 34798655442211 1123599999999999999999999999996
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=7.1e-52 Score=400.50 Aligned_cols=297 Identities=22% Similarity=0.347 Sum_probs=238.6
Q ss_pred ccCCCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCC----CCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCC
Q 038667 54 NDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCR----DCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARC 129 (411)
Q Consensus 54 ~~~~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~----~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C 129 (411)
.++.+..|+++|.||||+|++.|++||||+++||+|..|. .| ..++.|||++|+|++.
T Consensus 5 ~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~Sst~~~---------------- 66 (329)
T cd05485 5 SNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIAC--LLHNKYDSTKSSTYKK---------------- 66 (329)
T ss_pred eeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccc--cCCCeECCcCCCCeEE----------------
Confidence 4678899999999999999999999999999999999997 47 3568999999999998
Q ss_pred CCCCCcceeeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec---c-CCCcceEEecCCCCCch------
Q 038667 130 SAYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN---R-NFKFSGIFGLGIGRSSL------ 199 (411)
Q Consensus 130 ~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~---~-~~~~~GilGLg~~~~S~------ 199 (411)
..|.|.+.|++|+ +.|.+++|+|+|++ ++++++.|||+.... + ...++||||||++..|+
T Consensus 67 ----~~~~~~i~Y~~g~-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~ 136 (329)
T cd05485 67 ----NGTEFAIQYGSGS-LSGFLSTDTVSVGG-----VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPV 136 (329)
T ss_pred ----CCeEEEEEECCce-EEEEEecCcEEECC-----EEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCH
Confidence 7789999999998 79999999999987 789999999997653 2 24589999999987653
Q ss_pred HHhh-------cCceEEecCCCCCCCCCCcceecCCCCC-CCCC--cccccccCCCceEEEeeEEEECCeEEecCCCccc
Q 038667 200 VSQL-------NSSFSYCIGSLHDPDYLHNKLILGDGAI-IDEG--DATPLQFIDGHYYITLEAISVDGRMLDINPNIFK 269 (411)
Q Consensus 200 ~~ql-------~~~FS~~l~~~~~~~~~~g~l~fGg~~~-~~~~--~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~~~ 269 (411)
+.|| .++||+||.+..+. ...|+|+|||.+. .+.+ .|+|+ ....+|.|.+++|+|+++.+...
T Consensus 137 ~~~l~~qg~i~~~~FS~~l~~~~~~-~~~G~l~fGg~d~~~~~g~l~~~p~-~~~~~~~v~~~~i~v~~~~~~~~----- 209 (329)
T cd05485 137 FYNMVNQKLVDAPVFSFYLNRDPSA-KEGGELILGGSDPKHYTGNFTYLPV-TRKGYWQFKMDSVSVGEGEFCSG----- 209 (329)
T ss_pred HHHHHhCCCCCCCEEEEEecCCCCC-CCCcEEEEcccCHHHcccceEEEEc-CCceEEEEEeeEEEECCeeecCC-----
Confidence 3343 57999999865432 2348999999653 3333 58898 45789999999999999876422
Q ss_pred ccCCCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCC-CCccccccCCCccCCCeEEEEEcCCcEEEEcC
Q 038667 270 RDDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPD-KLCYHGIMSSDLKGFPTVRFHFRGGAKLALEK 348 (411)
Q Consensus 270 ~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~-~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~ 348 (411)
...+||||||++++||++++++|.+++.... ...... .+|+.. .++|+|+|+|+ |+.+.|++
T Consensus 210 ----~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~------~~~~~~~~~C~~~------~~~p~i~f~fg-g~~~~i~~ 272 (329)
T cd05485 210 ----GCQAIADTGTSLIAGPVDEIEKLNNAIGAKP------IIGGEYMVNCSAI------PSLPDITFVLG-GKSFSLTG 272 (329)
T ss_pred ----CcEEEEccCCcceeCCHHHHHHHHHHhCCcc------ccCCcEEEecccc------ccCCcEEEEEC-CEEeEECh
Confidence 4689999999999999999999998884311 111112 789843 36899999998 89999999
Q ss_pred CceEEEcC--CCeEEEE-EEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEec
Q 038667 349 DSMFYQPR--PDAFCMA-VNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQR 402 (411)
Q Consensus 349 ~~y~~~~~--~~~~C~~-~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~ 402 (411)
++|+++.. +..+|+. +.........++.||||+.|||++|+|||++++|||||.
T Consensus 273 ~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 273 KDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred HHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 99998863 3468975 443221111123599999999999999999999999985
No 14
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=8.8e-52 Score=399.61 Aligned_cols=297 Identities=23% Similarity=0.351 Sum_probs=237.0
Q ss_pred cCCCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCC----CCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCC
Q 038667 55 DISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRD----CSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCS 130 (411)
Q Consensus 55 ~~~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~----C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~ 130 (411)
++.+..|+++|.||||+|++.|+|||||+++||+|..|.. | ..++.|+|++|+|++.
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~SsT~~~----------------- 63 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTAC--VTHNLYDASDSSTYKE----------------- 63 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhh--cccCcCCCCCCeeeeE-----------------
Confidence 4678999999999999999999999999999999988875 6 4678999999999998
Q ss_pred CCCCcceeeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec---c-CCCcceEEecCCCCCc--------
Q 038667 131 AYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN---R-NFKFSGIFGLGIGRSS-------- 198 (411)
Q Consensus 131 ~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~---~-~~~~~GilGLg~~~~S-------- 198 (411)
..|.|.+.|++|+ +.|.+++|+|+|++ +.+ ++.||++.... + ...++||||||++..+
T Consensus 64 ---~~~~~~~~Yg~g~-~~G~~~~D~v~~g~-----~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~ 133 (326)
T cd05487 64 ---NGTEFTIHYASGT-VKGFLSQDIVTVGG-----IPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVF 133 (326)
T ss_pred ---CCEEEEEEeCCce-EEEEEeeeEEEECC-----EEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHH
Confidence 7889999999998 79999999999987 566 47899998753 2 2358999999987654
Q ss_pred --hHHh--h-cCceEEecCCCCCCCCCCcceecCCCCC-CCCCc--ccccccCCCceEEEeeEEEECCeEEecCCCcccc
Q 038667 199 --LVSQ--L-NSSFSYCIGSLHDPDYLHNKLILGDGAI-IDEGD--ATPLQFIDGHYYITLEAISVDGRMLDINPNIFKR 270 (411)
Q Consensus 199 --~~~q--l-~~~FS~~l~~~~~~~~~~g~l~fGg~~~-~~~~~--~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~ 270 (411)
+++| + .++||+||.+... ....|.|+|||.+. .+.+. |+|+ ....+|.|.+++|+|+++.+...
T Consensus 134 ~~L~~qg~i~~~~FS~~L~~~~~-~~~~G~l~fGg~d~~~y~g~l~~~~~-~~~~~w~v~l~~i~vg~~~~~~~------ 205 (326)
T cd05487 134 DNIMSQGVLKEDVFSVYYSRDSS-HSLGGEIVLGGSDPQHYQGDFHYINT-SKTGFWQIQMKGVSVGSSTLLCE------ 205 (326)
T ss_pred HHHHhcCCCCCCEEEEEEeCCCC-CCCCcEEEECCcChhhccCceEEEEC-CcCceEEEEecEEEECCEEEecC------
Confidence 3344 2 6899999987532 22358999999653 34554 6666 45779999999999999876543
Q ss_pred cCCCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcCCcEEEEcCCc
Q 038667 271 DDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDS 350 (411)
Q Consensus 271 ~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~ 350 (411)
.+..+||||||++++||.++++++++++.... . ......+|+.. ..+|+|+|+|+ |+.++|++++
T Consensus 206 --~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~-----~-~~~y~~~C~~~------~~~P~i~f~fg-g~~~~v~~~~ 270 (326)
T cd05487 206 --DGCTAVVDTGASFISGPTSSISKLMEALGAKE-----R-LGDYVVKCNEV------PTLPDISFHLG-GKEYTLSSSD 270 (326)
T ss_pred --CCCEEEECCCccchhCcHHHHHHHHHHhCCcc-----c-CCCEEEecccc------CCCCCEEEEEC-CEEEEeCHHH
Confidence 14689999999999999999999999984321 1 11112789843 36899999997 8999999999
Q ss_pred eEEEcCC--CeEEEE-EEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEecC
Q 038667 351 MFYQPRP--DAFCMA-VNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRM 403 (411)
Q Consensus 351 y~~~~~~--~~~C~~-~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~ 403 (411)
|+++... +..|+. +.........++.||||++|||++|+|||++++|||||++
T Consensus 271 yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 271 YVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred hEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 9988643 568964 5443211112346999999999999999999999999985
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=8e-51 Score=403.64 Aligned_cols=295 Identities=22% Similarity=0.295 Sum_probs=233.3
Q ss_pred ccccCCCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCC
Q 038667 52 PSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSA 131 (411)
Q Consensus 52 ~~~~~~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~ 131 (411)
++.+..+..|+++|.||||||++.|+|||||+++||+|..|..|..+.++.|||++|+|++.
T Consensus 131 ~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~------------------ 192 (453)
T PTZ00147 131 ELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEK------------------ 192 (453)
T ss_pred eccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEE------------------
Confidence 33356789999999999999999999999999999999999863225778999999999988
Q ss_pred CCCcceeeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec-c-----CCCcceEEecCCCCCch------
Q 038667 132 YKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN-R-----NFKFSGIFGLGIGRSSL------ 199 (411)
Q Consensus 132 ~~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~-~-----~~~~~GilGLg~~~~S~------ 199 (411)
..+.+.+.|++|+ +.|.+++|+|+|++ ++++ ..|+|+.... + ...++||||||++..|.
T Consensus 193 --~~~~f~i~Yg~Gs-vsG~~~~DtVtiG~-----~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~ 263 (453)
T PTZ00147 193 --DGTKVEMNYVSGT-VSGFFSKDLVTIGN-----LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPY 263 (453)
T ss_pred --CCCEEEEEeCCCC-EEEEEEEEEEEECC-----EEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCH
Confidence 6789999999997 79999999999998 7777 5788887643 2 23589999999987653
Q ss_pred HHhh-------cCceEEecCCCCCCCCCCcceecCCCCCC-CCC--cccccccCCCceEEEeeEEEECCeEEecCCCccc
Q 038667 200 VSQL-------NSSFSYCIGSLHDPDYLHNKLILGDGAII-DEG--DATPLQFIDGHYYITLEAISVDGRMLDINPNIFK 269 (411)
Q Consensus 200 ~~ql-------~~~FS~~l~~~~~~~~~~g~l~fGg~~~~-~~~--~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~~~ 269 (411)
+.+| .++||+||++... ..|.|+|||.+.. +.+ .|+|+ ....+|.|.++ +.+++...
T Consensus 264 ~~~L~~qg~I~~~vFS~~L~~~~~---~~G~L~fGGiD~~ky~G~l~y~pl-~~~~~W~V~l~-~~vg~~~~-------- 330 (453)
T PTZ00147 264 VVELKNQNKIEQAVFTFYLPPEDK---HKGYLTIGGIEERFYEGPLTYEKL-NHDLYWQVDLD-VHFGNVSS-------- 330 (453)
T ss_pred HHHHHHcCCCCccEEEEEecCCCC---CCeEEEECCcChhhcCCceEEEEc-CCCceEEEEEE-EEECCEec--------
Confidence 3343 5799999986432 3489999997633 344 58998 56789999998 57776431
Q ss_pred ccCCCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcCCcEEEEcCC
Q 038667 270 RDDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKD 349 (411)
Q Consensus 270 ~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~ 349 (411)
....+||||||++++||+++++++.+++.... .+.......+|+. ..+|+|+|+|+ |+.++|+|+
T Consensus 331 ---~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~----~~~~~~y~~~C~~-------~~lP~~~f~f~-g~~~~L~p~ 395 (453)
T PTZ00147 331 ---EKANVIVDSGTSVITVPTEFLNKFVESLDVFK----VPFLPLYVTTCNN-------TKLPTLEFRSP-NKVYTLEPE 395 (453)
T ss_pred ---CceeEEECCCCchhcCCHHHHHHHHHHhCCee----cCCCCeEEEeCCC-------CCCCeEEEEEC-CEEEEECHH
Confidence 14789999999999999999999999884321 0111111168984 26899999998 899999999
Q ss_pred ceEEEc--CCCeEEEE-EEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEecCC
Q 038667 350 SMFYQP--RPDAFCMA-VNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMD 404 (411)
Q Consensus 350 ~y~~~~--~~~~~C~~-~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~~ 404 (411)
+|+.+. .....|+. +....... +.||||++|||++|+|||++++|||||+++
T Consensus 396 ~yi~~~~~~~~~~C~~~i~~~~~~~---~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 396 YYLQPIEDIGSALCMLNIIPIDLEK---NTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred HheeccccCCCcEEEEEEEECCCCC---CCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 999764 23457975 55433221 249999999999999999999999999986
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=5e-51 Score=400.10 Aligned_cols=314 Identities=20% Similarity=0.233 Sum_probs=234.0
Q ss_pred ceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCCCccee
Q 038667 59 SLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIY 138 (411)
Q Consensus 59 ~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~ 138 (411)
..|+++|.||||+|++.|+|||||+++||+|..|.. .++.|||++|+|++. ..|.|
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~----~~~~f~~~~SsT~~~--------------------~~~~~ 57 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPF----IHTYFHRELSSTYRD--------------------LGKGV 57 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCcc----ccccCCchhCcCccc--------------------CCceE
Confidence 479999999999999999999999999999988743 467899999999998 67899
Q ss_pred eEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec--c-C-CCcceEEecCCCCC------------chHHh
Q 038667 139 TQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN--R-N-FKFSGIFGLGIGRS------------SLVSQ 202 (411)
Q Consensus 139 ~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~--~-~-~~~~GilGLg~~~~------------S~~~q 202 (411)
.+.|++|+ +.|.+++|+|+|++.. ...+ .+.|+++.... + . ..++||||||++.+ ++++|
T Consensus 58 ~i~Yg~Gs-~~G~~~~D~v~ig~~~--~~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q 133 (364)
T cd05473 58 TVPYTQGS-WEGELGTDLVSIPKGP--NVTF-RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQ 133 (364)
T ss_pred EEEECcce-EEEEEEEEEEEECCCC--ccce-EEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhc
Confidence 99999997 6999999999998521 1222 23455655433 2 2 25799999999865 34455
Q ss_pred h--cCceEEecCCCC--C----CCCCCcceecCCCCC-CCCC--cccccccCCCceEEEeeEEEECCeEEecCCCccccc
Q 038667 203 L--NSSFSYCIGSLH--D----PDYLHNKLILGDGAI-IDEG--DATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRD 271 (411)
Q Consensus 203 l--~~~FS~~l~~~~--~----~~~~~g~l~fGg~~~-~~~~--~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~~ 271 (411)
. .++||+||.... . .....|.|+|||.+. .+.+ .|+|+ ....+|.|.+++|+|+++.+..+...+.
T Consensus 134 ~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~-~~~~~~~v~l~~i~vg~~~~~~~~~~~~-- 210 (364)
T cd05473 134 TGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPI-REEWYYEVIILKLEVGGQSLNLDCKEYN-- 210 (364)
T ss_pred cCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEec-CcceeEEEEEEEEEECCEeccccccccc--
Confidence 3 569999875311 0 112358999999653 3344 59999 4567999999999999998876533221
Q ss_pred CCCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCC--CCCCCCccccccCCCccCCCeEEEEEcCC-----cEE
Q 038667 272 DSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSY--SWPDKLCYHGIMSSDLKGFPTVRFHFRGG-----AKL 344 (411)
Q Consensus 272 ~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~--~~~~~~C~~~~~~~~~~~~P~i~~~f~~g-----~~~ 344 (411)
...+||||||++++||++++++|+++++++......+.. .....+|+.... .....+|+|+|+|+++ .++
T Consensus 211 --~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~-~~~~~~P~i~~~f~g~~~~~~~~l 287 (364)
T cd05473 211 --YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGT-TPWEIFPKISIYLRDENSSQSFRI 287 (364)
T ss_pred --CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccC-chHhhCCcEEEEEccCCCCceEEE
Confidence 247999999999999999999999999887531001111 111268985321 1123699999999842 478
Q ss_pred EEcCCceEEEcC---CCeEEEEEEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEecCCCCCccC
Q 038667 345 ALEKDSMFYQPR---PDAFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMDCEVLDD 410 (411)
Q Consensus 345 ~l~~~~y~~~~~---~~~~C~~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~~c~~~~~ 410 (411)
.|+|++|+.... .+..|+++...... +.||||+.|||++|+|||++++|||||+++|.+++.
T Consensus 288 ~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~----~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~~ 352 (364)
T cd05473 288 TILPQLYLRPVEDHGTQLDCYKFAISQST----NGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHDG 352 (364)
T ss_pred EECHHHhhhhhccCCCcceeeEEeeecCC----CceEEeeeeEcceEEEEECCCCEEeeEecccccccC
Confidence 999999998642 35689864332221 249999999999999999999999999999998753
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=5.7e-50 Score=396.74 Aligned_cols=293 Identities=23% Similarity=0.333 Sum_probs=231.1
Q ss_pred ccccCCCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCC--CCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCC
Q 038667 52 PSNDISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRD--CSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARC 129 (411)
Q Consensus 52 ~~~~~~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~--C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C 129 (411)
++.++.+..|+++|.||||+|++.|+|||||+++||+|..|.. | +.++.|||++|+|++.
T Consensus 130 ~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C--~~~~~yd~s~SsT~~~---------------- 191 (450)
T PTZ00013 130 ELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGC--SIKNLYDSSKSKSYEK---------------- 191 (450)
T ss_pred eeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccc--ccCCCccCccCccccc----------------
Confidence 3335678899999999999999999999999999999999985 7 5678999999999988
Q ss_pred CCCCCcceeeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec-----c-CCCcceEEecCCCCCc-----
Q 038667 130 SAYKHRCIYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN-----R-NFKFSGIFGLGIGRSS----- 198 (411)
Q Consensus 130 ~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~-----~-~~~~~GilGLg~~~~S----- 198 (411)
..|.+.+.|++|+ +.|.+++|+|+|++ ++++ ..|+++.... + ...++||||||++..+
T Consensus 192 ----~~~~~~i~YG~Gs-v~G~~~~Dtv~iG~-----~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~ 260 (450)
T PTZ00013 192 ----DGTKVDITYGSGT-VKGFFSKDLVTLGH-----LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSID 260 (450)
T ss_pred ----CCcEEEEEECCce-EEEEEEEEEEEECC-----EEEc-cEEEEEEeccccccceecccccceecccCCccccccCC
Confidence 6789999999998 79999999999998 7776 6788887543 2 2358999999998654
Q ss_pred -hHHhh-------cCceEEecCCCCCCCCCCcceecCCCCC-CCCC--cccccccCCCceEEEeeEEEECCeEEecCCCc
Q 038667 199 -LVSQL-------NSSFSYCIGSLHDPDYLHNKLILGDGAI-IDEG--DATPLQFIDGHYYITLEAISVDGRMLDINPNI 267 (411)
Q Consensus 199 -~~~ql-------~~~FS~~l~~~~~~~~~~g~l~fGg~~~-~~~~--~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~ 267 (411)
++.|| .++||+||++... ..|.|+|||.+. .+.+ .|+|+ ....+|.|.++ +.+|.... .
T Consensus 261 p~~~~L~~qg~I~~~vFS~~L~~~~~---~~G~L~fGGiD~~~y~G~L~y~pv-~~~~yW~I~l~-v~~G~~~~--~--- 330 (450)
T PTZ00013 261 PIVVELKNQNKIDNALFTFYLPVHDV---HAGYLTIGGIEEKFYEGNITYEKL-NHDLYWQIDLD-VHFGKQTM--Q--- 330 (450)
T ss_pred CHHHHHHhccCcCCcEEEEEecCCCC---CCCEEEECCcCccccccceEEEEc-CcCceEEEEEE-EEECceec--c---
Confidence 34444 5789999986432 348999999663 3344 59999 56789999998 66765432 1
Q ss_pred ccccCCCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcCCcEEEEc
Q 038667 268 FKRDDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALE 347 (411)
Q Consensus 268 ~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~ 347 (411)
...+||||||+++++|+++++++.+++.... .+.......+|+. ..+|+|+|+|+ |.+++|+
T Consensus 331 ------~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~----~~~~~~y~~~C~~-------~~lP~i~F~~~-g~~~~L~ 392 (450)
T PTZ00013 331 ------KANVIVDSGTTTITAPSEFLNKFFANLNVIK----VPFLPFYVTTCDN-------KEMPTLEFKSA-NNTYTLE 392 (450)
T ss_pred ------ccceEECCCCccccCCHHHHHHHHHHhCCee----cCCCCeEEeecCC-------CCCCeEEEEEC-CEEEEEC
Confidence 4679999999999999999999998884221 0111111278973 26899999998 8999999
Q ss_pred CCceEEEc--CCCeEEEE-EEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEecCC
Q 038667 348 KDSMFYQP--RPDAFCMA-VNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMD 404 (411)
Q Consensus 348 ~~~y~~~~--~~~~~C~~-~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~~ 404 (411)
|++|+.+. .++..|+. +.+.... .+.||||++|||++|+|||++++|||||+++
T Consensus 393 p~~Yi~~~~~~~~~~C~~~i~~~~~~---~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 393 PEYYMNPLLDVDDTLCMITMLPVDID---DNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred HHHheehhccCCCCeeEEEEEECCCC---CCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 99999763 33568964 4443221 1259999999999999999999999999875
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.7e-50 Score=380.88 Aligned_cols=255 Identities=30% Similarity=0.520 Sum_probs=210.2
Q ss_pred ceEEEEEEeCCCCceEEEEEeCCCCceeEeCC-CCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCCCcce
Q 038667 59 SLFYVNISIGQPPVPQFTAMDTGSSLLWVHCY-PCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCI 137 (411)
Q Consensus 59 ~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~-~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~ 137 (411)
++|+++|.||||||++.|+|||||+++||+|. +|..| .|.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c---------------------------------------~c~ 41 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC---------------------------------------QCD 41 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC---------------------------------------cCc
Confidence 57999999999999999999999999999984 67666 257
Q ss_pred eeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec--c---CCCcceEEecCCCCCchHHhh------cCc
Q 038667 138 YTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN--R---NFKFSGIFGLGIGRSSLVSQL------NSS 206 (411)
Q Consensus 138 ~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~--~---~~~~~GilGLg~~~~S~~~ql------~~~ 206 (411)
|.+.|+|++.+.|.+++|+|+|+..++ ...++++.|||+.... + ...++||||||++..|+++|| +++
T Consensus 42 ~~i~Ygd~~~~~G~~~~D~v~~~~~~~-~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~ 120 (273)
T cd05475 42 YEIEYADGGSSMGVLVTDIFSLKLTNG-SRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNV 120 (273)
T ss_pred cEeEeCCCCceEEEEEEEEEEEeecCC-CcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCce
Confidence 999999887799999999999975332 2467899999997654 1 235899999999999999998 368
Q ss_pred eEEecCCCCCCCCCCcceecCCCCCC-CCCcccccccC--CCceEEEeeEEEECCeEEecCCCcccccCCCCcEEEeccc
Q 038667 207 FSYCIGSLHDPDYLHNKLILGDGAII-DEGDATPLQFI--DGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGT 283 (411)
Q Consensus 207 FS~~l~~~~~~~~~~g~l~fGg~~~~-~~~~~~pl~~~--~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~~~~iiDSGT 283 (411)
||+||++. ..|.|+||+.... ....|+|+... ..+|.|++.+|+|+++.+.. ....+||||||
T Consensus 121 Fs~~l~~~-----~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~---------~~~~~ivDTGT 186 (273)
T cd05475 121 IGHCLSSN-----GGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGG---------KGLEVVFDSGS 186 (273)
T ss_pred EEEEccCC-----CCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcC---------CCceEEEECCC
Confidence 99999862 2488999965433 13469999533 57999999999999985322 25789999999
Q ss_pred ccccccHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcCC---cEEEEcCCceEEEcCCCeE
Q 038667 284 DVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGG---AKLALEKDSMFYQPRPDAF 360 (411)
Q Consensus 284 t~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g---~~~~l~~~~y~~~~~~~~~ 360 (411)
++++||+++| +|+|+|+|+++ ++++|+|++|++....+..
T Consensus 187 t~t~lp~~~y-------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~ 229 (273)
T cd05475 187 SYTYFNAQAY-------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNV 229 (273)
T ss_pred ceEEcCCccc-------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCE
Confidence 9999999866 46999999843 7999999999998766778
Q ss_pred EEEEEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEecCCC
Q 038667 361 CMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMDC 405 (411)
Q Consensus 361 C~~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~~c 405 (411)
|++++...... .++.||||+.|||++|+|||++++|||||+++|
T Consensus 230 Cl~~~~~~~~~-~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 230 CLGILNGSEIG-LGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEEEecCCCcC-CCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 99988654322 123599999999999999999999999999999
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=3.3e-49 Score=370.78 Aligned_cols=252 Identities=40% Similarity=0.669 Sum_probs=213.9
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCCCcceee
Q 038667 60 LFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYT 139 (411)
Q Consensus 60 ~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~~ 139 (411)
+|+++|.||||+|++.|+|||||+++||+| | .|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----~-----------------------------------------~~~ 34 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----C-----------------------------------------SYE 34 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-----C-----------------------------------------ceE
Confidence 599999999999999999999999999976 2 678
Q ss_pred EeeCCCCeeeeeEEEEEEEeeCCCCCce--eeecEEEEeEeeec--cCCCcceEEecCCCCCchHHhh---cCceEEecC
Q 038667 140 QLYLIGPETSVFVSTEQLTFKNTDESTI--HVQDVVFGCGFSTN--RNFKFSGIFGLGIGRSSLVSQL---NSSFSYCIG 212 (411)
Q Consensus 140 ~~Y~~gs~~~G~~~~D~v~~~~~~~~~~--~~~~~~fg~~~~~~--~~~~~~GilGLg~~~~S~~~ql---~~~FS~~l~ 212 (411)
+.|+||+.+.|.+++|+|+|++ . +++++.|||+.... ....++||||||+...|+++|| .++||+||.
T Consensus 35 ~~Y~dg~~~~G~~~~D~v~~g~-----~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs~~l~ 109 (265)
T cd05476 35 YSYGDGSSTSGVLATETFTFGD-----SSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTGNKFSYCLV 109 (265)
T ss_pred eEeCCCceeeeeEEEEEEEecC-----CCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhcccCeeEEEcc
Confidence 9999988899999999999998 5 78899999999875 3446899999999999999999 359999998
Q ss_pred CCCCCCCCCcceecCCCCCCC--CCcccccccC---CCceEEEeeEEEECCeEEecCCCcccc-cCCCCcEEEecccccc
Q 038667 213 SLHDPDYLHNKLILGDGAIID--EGDATPLQFI---DGHYYITLEAISVDGRMLDINPNIFKR-DDSGGGVMIDSGTDVT 286 (411)
Q Consensus 213 ~~~~~~~~~g~l~fGg~~~~~--~~~~~pl~~~---~~~y~v~l~~i~v~g~~~~~~~~~~~~-~~~~~~~iiDSGTt~~ 286 (411)
+... ....|+|+||+.+..+ ...|+|+... ..+|.|+|++|+|+++.+.+++..+.. ......+||||||+++
T Consensus 110 ~~~~-~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~ 188 (265)
T cd05476 110 PHDD-TGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLT 188 (265)
T ss_pred CCCC-CCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcce
Confidence 7431 2235899999976432 4469999643 689999999999999998765443321 2335789999999999
Q ss_pred cccHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcCCcEEEEcCCceEEEcCCCeEEEEEEe
Q 038667 287 WLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPDAFCMAVNP 366 (411)
Q Consensus 287 ~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~C~~~~~ 366 (411)
+||++++ |+|+|+|++|+++.|++++|+++...+.+|+++..
T Consensus 189 ~lp~~~~--------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~ 230 (265)
T cd05476 189 YLPDPAY--------------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLAILS 230 (265)
T ss_pred EcCcccc--------------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEEEec
Confidence 9999877 68999998789999999999998777889998887
Q ss_pred CCCCCCcccceeeehhhcceeEEEEECCCCEEEEecCCC
Q 038667 367 ASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMDC 405 (411)
Q Consensus 367 ~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~~c 405 (411)
.... +.||||++|||++|++||++++|||||+++|
T Consensus 231 ~~~~----~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 231 SSSG----GVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCCC----CcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 5322 2599999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.3e-48 Score=367.68 Aligned_cols=256 Identities=21% Similarity=0.252 Sum_probs=211.2
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCCCcceeeE
Q 038667 61 FYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQ 140 (411)
Q Consensus 61 Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~~~ 140 (411)
|+++|.||||+|++.|+|||||+++||+|..|..|..+.++.|+|++|+|++.. ..|.|.+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~-------------------~~~~~~i 61 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLL-------------------PGATWSI 61 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceec-------------------CCcEEEE
Confidence 799999999999999999999999999999999987777888999999999874 5689999
Q ss_pred eeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec----cCCCcceEEecCCCCCc---------hHHhh----
Q 038667 141 LYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN----RNFKFSGIFGLGIGRSS---------LVSQL---- 203 (411)
Q Consensus 141 ~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~----~~~~~~GilGLg~~~~S---------~~~ql---- 203 (411)
.|++|+.+.|.+++|+|+|++ .+++++.|||++... ....++||||||++..+ +..+|
T Consensus 62 ~Y~~G~~~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~ 136 (278)
T cd06097 62 SYGDGSSASGIVYTDTVSIGG-----VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSL 136 (278)
T ss_pred EeCCCCeEEEEEEEEEEEECC-----EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence 999998789999999999998 789999999998754 22469999999997654 33444
Q ss_pred -cCceEEecCCCCCCCCCCcceecCCCCCC-CC--CcccccccCCCceEEEeeEEEECCeEEecCCCcccccCCCCcEEE
Q 038667 204 -NSSFSYCIGSLHDPDYLHNKLILGDGAII-DE--GDATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMI 279 (411)
Q Consensus 204 -~~~FS~~l~~~~~~~~~~g~l~fGg~~~~-~~--~~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~~~~ii 279 (411)
.++||+||.+. ..|+|+|||.++. +. ..|+|+.....+|.|++++|+|+++..... ....+||
T Consensus 137 ~~~~Fs~~l~~~-----~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~--------~~~~~ii 203 (278)
T cd06097 137 DAPLFTADLRKA-----APGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSR--------SGFSAIA 203 (278)
T ss_pred cCceEEEEecCC-----CCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeec--------CCceEEe
Confidence 47999999862 2489999997632 33 459999544789999999999999843322 2578999
Q ss_pred ecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCC-CCCccccccCCCccCCCeEEEEEcCCcEEEEcCCceEEEcCCC
Q 038667 280 DSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWP-DKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPD 358 (411)
Q Consensus 280 DSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~-~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~ 358 (411)
||||++++||.+++++|.+++.... ....... ..+|.. .+|+|+|+|
T Consensus 204 DSGTs~~~lP~~~~~~l~~~l~g~~----~~~~~~~~~~~C~~--------~~P~i~f~~-------------------- 251 (278)
T cd06097 204 DTGTTLILLPDAIVEAYYSQVPGAY----YDSEYGGWVFPCDT--------TLPDLSFAV-------------------- 251 (278)
T ss_pred ecCCchhcCCHHHHHHHHHhCcCCc----ccCCCCEEEEECCC--------CCCCEEEEE--------------------
Confidence 9999999999999999999884211 1111111 278882 389999999
Q ss_pred eEEEEEEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEec
Q 038667 359 AFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQR 402 (411)
Q Consensus 359 ~~C~~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~ 402 (411)
.||||++|||++|+|||++++|||||+
T Consensus 252 -----------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 -----------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -----------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 299999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.5e-45 Score=351.66 Aligned_cols=263 Identities=21% Similarity=0.345 Sum_probs=213.3
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCCCcceee
Q 038667 60 LFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYT 139 (411)
Q Consensus 60 ~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~~ 139 (411)
.|+++|.||||+|++.|+|||||+++||+ .|.
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~------------------------------------------------~~~ 33 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP------------------------------------------------DFS 33 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee------------------------------------------------eeE
Confidence 69999999999999999999999999995 356
Q ss_pred EeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeeccCCCcceEEecCCCCC-----------chHHhh-----
Q 038667 140 QLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTNRNFKFSGIFGLGIGRS-----------SLVSQL----- 203 (411)
Q Consensus 140 ~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~GilGLg~~~~-----------S~~~ql----- 203 (411)
+.|++|+.+.|.+++|+|+|++ .+++++.|||++... ..+||||||+... +|+.||
T Consensus 34 ~~Y~~g~~~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~---~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~ 105 (295)
T cd05474 34 ISYGDGTSASGTWGTDTVSIGG-----ATVKNLQFAVANSTS---SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGL 105 (295)
T ss_pred EEeccCCcEEEEEEEEEEEECC-----eEecceEEEEEecCC---CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCc
Confidence 8899977789999999999988 688999999999843 4799999999876 678877
Q ss_pred --cCceEEecCCCCCCCCCCcceecCCCCCC-CCC--cccccccC-----CCceEEEeeEEEECCeEEecCCCcccccCC
Q 038667 204 --NSSFSYCIGSLHDPDYLHNKLILGDGAII-DEG--DATPLQFI-----DGHYYITLEAISVDGRMLDINPNIFKRDDS 273 (411)
Q Consensus 204 --~~~FS~~l~~~~~~~~~~g~l~fGg~~~~-~~~--~~~pl~~~-----~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~ 273 (411)
++.||+||.+.. ...|.|+|||.++. +.+ .|+|+... ..+|.|.+++|+|+++.+..+. ...
T Consensus 106 i~~~~Fsl~l~~~~---~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~-----~~~ 177 (295)
T cd05474 106 IKKNAYSLYLNDLD---ASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTL-----LSK 177 (295)
T ss_pred ccceEEEEEeCCCC---CCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccc-----cCC
Confidence 478999998743 23488999996532 333 58998533 2799999999999998865321 123
Q ss_pred CCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcCCcEEEEcCCceEE
Q 038667 274 GGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFY 353 (411)
Q Consensus 274 ~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~ 353 (411)
...++|||||++++||.+++++|++++.+.+. ........+|+... . |+|+|+|+ |+++.|++++|++
T Consensus 178 ~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~----~~~~~~~~~C~~~~------~-p~i~f~f~-g~~~~i~~~~~~~ 245 (295)
T cd05474 178 NLPALLDSGTTLTYLPSDIVDAIAKQLGATYD----SDEGLYVVDCDAKD------D-GSLTFNFG-GATISVPLSDLVL 245 (295)
T ss_pred CccEEECCCCccEeCCHHHHHHHHHHhCCEEc----CCCcEEEEeCCCCC------C-CEEEEEEC-CeEEEEEHHHhEe
Confidence 57899999999999999999999999965442 11111128999542 3 99999998 8999999999998
Q ss_pred EcC----CCeEEE-EEEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEecC
Q 038667 354 QPR----PDAFCM-AVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRM 403 (411)
Q Consensus 354 ~~~----~~~~C~-~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~ 403 (411)
+.. .+..|+ ++..... . .||||++|||++|++||.+++|||||++
T Consensus 246 ~~~~~~~~~~~C~~~i~~~~~-~----~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 246 PASTDDGGDGACYLGIQPSTS-D----YNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred ccccCCCCCCCeEEEEEeCCC-C----cEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 864 367884 6655432 1 4999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.1e-46 Score=359.63 Aligned_cols=293 Identities=22% Similarity=0.393 Sum_probs=235.5
Q ss_pred eEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCC-CCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCCCccee
Q 038667 60 LFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDC-SPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIY 138 (411)
Q Consensus 60 ~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C-~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~ 138 (411)
+|+++|.||||+|++.|++||||+++||++..|..| .......|++++|+|++. ..+.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~--------------------~~~~~ 60 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSN--------------------QGKPF 60 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEE--------------------EEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceecccccccccccccccccccccccc--------------------ceeee
Confidence 599999999999999999999999999999998875 335678999999999998 67789
Q ss_pred eEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec----cCCCcceEEecCCCC-------CchHHhh----
Q 038667 139 TQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN----RNFKFSGIFGLGIGR-------SSLVSQL---- 203 (411)
Q Consensus 139 ~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~----~~~~~~GilGLg~~~-------~S~~~ql---- 203 (411)
.+.|++|+ ++|.+++|+|+|++ +.+.++.||++.... ....++||||||+.. .+++.||
T Consensus 61 ~~~y~~g~-~~G~~~~D~v~ig~-----~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g 134 (317)
T PF00026_consen 61 SISYGDGS-VSGNLVSDTVSIGG-----LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQG 134 (317)
T ss_dssp EEEETTEE-EEEEEEEEEEEETT-----EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTT
T ss_pred eeeccCcc-cccccccceEeeee-----ccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhc
Confidence 99999999 89999999999998 899999999999853 234689999999753 3566676
Q ss_pred ---cCceEEecCCCCCCCCCCcceecCCCCCC-CCC--cccccccCCCceEEEeeEEEECCeEEecCCCcccccCCCCcE
Q 038667 204 ---NSSFSYCIGSLHDPDYLHNKLILGDGAII-DEG--DATPLQFIDGHYYITLEAISVDGRMLDINPNIFKRDDSGGGV 277 (411)
Q Consensus 204 ---~~~FS~~l~~~~~~~~~~g~l~fGg~~~~-~~~--~~~pl~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~~~~ 277 (411)
.++||++|.+.. ...|.|+|||.+.. +.+ .|.|+ ....+|.|.+.+|.++++..... ....+
T Consensus 135 ~i~~~~fsl~l~~~~---~~~g~l~~Gg~d~~~~~g~~~~~~~-~~~~~w~v~~~~i~i~~~~~~~~--------~~~~~ 202 (317)
T PF00026_consen 135 LISSNVFSLYLNPSD---SQNGSLTFGGYDPSKYDGDLVWVPL-VSSGYWSVPLDSISIGGESVFSS--------SGQQA 202 (317)
T ss_dssp SSSSSEEEEEEESTT---SSEEEEEESSEEGGGEESEEEEEEB-SSTTTTEEEEEEEEETTEEEEEE--------EEEEE
T ss_pred cccccccceeeeecc---cccchheeeccccccccCceeccCc-ccccccccccccccccccccccc--------cceee
Confidence 588999998865 23489999996532 344 48888 47889999999999999933222 13579
Q ss_pred EEecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcCCcEEEEcCCceEEEcCC
Q 038667 278 MIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRP 357 (411)
Q Consensus 278 iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~ 357 (411)
+|||||++++||.+++++|++++..... . .....+|... ..+|.|+|+|+ +.++.|+|++|+.+...
T Consensus 203 ~~Dtgt~~i~lp~~~~~~i~~~l~~~~~----~--~~~~~~c~~~------~~~p~l~f~~~-~~~~~i~~~~~~~~~~~ 269 (317)
T PF00026_consen 203 ILDTGTSYIYLPRSIFDAIIKALGGSYS----D--GVYSVPCNST------DSLPDLTFTFG-GVTFTIPPSDYIFKIED 269 (317)
T ss_dssp EEETTBSSEEEEHHHHHHHHHHHTTEEE----C--SEEEEETTGG------GGSEEEEEEET-TEEEEEEHHHHEEEESS
T ss_pred ecccccccccccchhhHHHHhhhccccc----c--eeEEEecccc------cccceEEEeeC-CEEEEecchHhcccccc
Confidence 9999999999999999999999964432 1 1112888844 26899999998 99999999999988744
Q ss_pred C--eEEEEEEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEecC
Q 038667 358 D--AFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRM 403 (411)
Q Consensus 358 ~--~~C~~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~ 403 (411)
. ..|+..+...+.....+.+|||.+|||++|++||.+++|||||++
T Consensus 270 ~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 270 GNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 3 389654443111122345999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.9e-44 Score=339.32 Aligned_cols=261 Identities=28% Similarity=0.467 Sum_probs=213.2
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCC--CCCCCCCcccccCCCCCcCCCCCCCCCCCCCCccee
Q 038667 61 FYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTI--FYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIY 138 (411)
Q Consensus 61 Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~--f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~ 138 (411)
|+++|.||||+|++.|+|||||+++||+|..|..|..+.... |++..|+++.. ..|.+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~--------------------~~~~~ 60 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKD--------------------TGCTF 60 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeec--------------------CCCEE
Confidence 789999999999999999999999999999999976555554 78888887776 78999
Q ss_pred eEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec---cCCCcceEEecCCCC------CchHHhh------
Q 038667 139 TQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN---RNFKFSGIFGLGIGR------SSLVSQL------ 203 (411)
Q Consensus 139 ~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~---~~~~~~GilGLg~~~------~S~~~ql------ 203 (411)
.+.|++|+ +.|.+++|+|+|++ ..++++.|||++... ....++||||||+.. .+++.||
T Consensus 61 ~~~Y~~g~-~~g~~~~D~v~~~~-----~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i 134 (283)
T cd05471 61 SITYGDGS-VTGGLGTDTVTIGG-----LTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLI 134 (283)
T ss_pred EEEECCCe-EEEEEEEeEEEECC-----EEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCC
Confidence 99999986 79999999999998 678999999999875 334689999999988 7899987
Q ss_pred -cCceEEecCCCCCCCCCCcceecCCCCCC-C--CCcccccccC-CCceEEEeeEEEECCeEEecCCCcccccCCCCcEE
Q 038667 204 -NSSFSYCIGSLHDPDYLHNKLILGDGAII-D--EGDATPLQFI-DGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVM 278 (411)
Q Consensus 204 -~~~FS~~l~~~~~~~~~~g~l~fGg~~~~-~--~~~~~pl~~~-~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~~~~i 278 (411)
.++||+||.+.. .....|.|+|||.+.. + ...|+|+... ..+|.|.+++|.|+++..... .....++
T Consensus 135 ~~~~Fs~~l~~~~-~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~-------~~~~~~i 206 (283)
T cd05471 135 SSPVFSFYLGRDG-DGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISS-------SGGGGAI 206 (283)
T ss_pred CCCEEEEEEcCCC-CCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeec-------CCCcEEE
Confidence 489999999853 1224589999997643 2 3459999544 889999999999999751111 1257999
Q ss_pred EecccccccccHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcCCcEEEEcCCceEEEcCCC
Q 038667 279 IDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPD 358 (411)
Q Consensus 279 iDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~ 358 (411)
|||||++++||.+++++|++++.+.+. .........|... ..+|+|+|+|
T Consensus 207 iDsGt~~~~lp~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~------~~~p~i~f~f-------------------- 256 (283)
T cd05471 207 VDSGTSLIYLPSSVYDAILKALGAAVS----SSDGGYGVDCSPC------DTLPDITFTF-------------------- 256 (283)
T ss_pred EecCCCCEeCCHHHHHHHHHHhCCccc----ccCCcEEEeCccc------CcCCCEEEEE--------------------
Confidence 999999999999999999999965443 1000011344422 4799999999
Q ss_pred eEEEEEEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEec
Q 038667 359 AFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQR 402 (411)
Q Consensus 359 ~~C~~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~ 402 (411)
.+|||++|||++|++||++++|||||+
T Consensus 257 -----------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -----------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -----------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 299999999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=8.5e-33 Score=239.87 Aligned_cols=157 Identities=41% Similarity=0.726 Sum_probs=129.1
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCC--CCCCCCCccee
Q 038667 61 FYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYA--RCSAYKHRCIY 138 (411)
Q Consensus 61 Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~--~C~~~~~~~~~ 138 (411)
|+++|.||||+|++.|+|||||+++|++| ..+.|+|++|+||+.++|.++.|...+.. .|...+..|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999998 46899999999999999999999877643 44444488999
Q ss_pred eEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec-cCCCcceEEecCCCCCchHHhh----cCceEEecCC
Q 038667 139 TQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN-RNFKFSGIFGLGIGRSSLVSQL----NSSFSYCIGS 213 (411)
Q Consensus 139 ~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~-~~~~~~GilGLg~~~~S~~~ql----~~~FS~~l~~ 213 (411)
.+.|++++.+.|.+++|+|+++...+....+.++.|||++... +...++||||||++++||++|| .++|||||++
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL~~ 151 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYCLPS 151 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB-S
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEECCC
Confidence 9999999999999999999999865555788899999999987 4447999999999999999999 7999999998
Q ss_pred CCCCCCCCcceecCC
Q 038667 214 LHDPDYLHNKLILGD 228 (411)
Q Consensus 214 ~~~~~~~~g~l~fGg 228 (411)
+.....|.|+||+
T Consensus 152 --~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 152 --SSPSSSGFLSFGD 164 (164)
T ss_dssp ---SSSSEEEEEECS
T ss_pred --CCCCCCEEEEeCc
Confidence 2344569999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.95 E-value=7e-28 Score=208.87 Aligned_cols=155 Identities=35% Similarity=0.614 Sum_probs=120.3
Q ss_pred ceEEEeeEEEECCeEEecCCCcccccCCCCcEEEecccccccccHHHHHHHHHHHHHHhhcCCCcC---CCCCCCCcccc
Q 038667 246 HYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVKEAYEALRDEVMIRLEGEQMRS---YSWPDKLCYHG 322 (411)
Q Consensus 246 ~y~v~l~~i~v~g~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~l~~~~~g~~~~~---~~~~~~~C~~~ 322 (411)
+|+|+|.+|+||++++.+++..|...++.+++||||||++|+||+++|++|+++|.+++.....++ .......||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 589999999999999999988874455679999999999999999999999999999997422222 11222899976
Q ss_pred cc---CCCccCCCeEEEEEcCCcEEEEcCCceEEEcCCCeEEEEEEeCCCCCCcccceeeehhhcceeEEEEECCCCEEE
Q 038667 323 IM---SSDLKGFPTVRFHFRGGAKLALEKDSMFYQPRPDAFCMAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKT 399 (411)
Q Consensus 323 ~~---~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riG 399 (411)
.. ......+|+|+|||.+|++++|++++|++...++.+|+++....... ....|||+.+|++++++||++++|||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~--~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADD--DGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTT--SSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCC--CCcEEECHHHhcCcEEEEECCCCEEE
Confidence 64 23456899999999989999999999999998899999999881111 12499999999999999999999999
Q ss_pred Eec
Q 038667 400 FQR 402 (411)
Q Consensus 400 fa~ 402 (411)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.91 E-value=9e-24 Score=170.99 Aligned_cols=104 Identities=34% Similarity=0.563 Sum_probs=92.9
Q ss_pred EEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCC-CCCCCCcccccCCCCCcCCCCCCCCCCCCCCcceeeEe
Q 038667 63 VNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIF-YPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQL 141 (411)
Q Consensus 63 ~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f-~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~~~~ 141 (411)
++|.||||||++.|+|||||+++||+|..|..|..+.++.| +|++|++++. ..|.|.+.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~--------------------~~~~~~~~ 60 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSD--------------------NGCTFSIT 60 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCC--------------------CCcEEEEE
Confidence 47999999999999999999999999999998876667777 9999999988 78999999
Q ss_pred eCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeec--c--CCCcceEEec
Q 038667 142 YLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTN--R--NFKFSGIFGL 192 (411)
Q Consensus 142 Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~--~--~~~~~GilGL 192 (411)
|++|+ +.|.++.|+|+|++ ..++++.|||++... + ....+|||||
T Consensus 61 Y~~g~-~~g~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 61 YGTGS-LSGGLSTDTVSIGD-----IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred eCCCe-EEEEEEEEEEEECC-----EEECCEEEEEEEecCCccccccccccccCC
Confidence 99997 68999999999988 789999999999875 1 2468999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.13 E-value=9.9e-06 Score=63.10 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=66.5
Q ss_pred ceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCCCccee
Q 038667 59 SLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIY 138 (411)
Q Consensus 59 ~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~ 138 (411)
+.|++++.|+ .+++.++||||++.+|+.......+. . .. . .....
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~----------~--~~-~--------------------~~~~~ 45 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG----------L--PL-T--------------------LGGKV 45 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC----------C--Cc-c--------------------CCCcE
Confidence 3589999999 69999999999999999654221120 0 00 0 22356
Q ss_pred eEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeeccCCCcceEEecCC
Q 038667 139 TQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTNRNFKFSGIFGLGI 194 (411)
Q Consensus 139 ~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~GilGLg~ 194 (411)
.+..++|.........+.+++++ .++.++.+........ ..+||||+.+
T Consensus 46 ~~~~~~G~~~~~~~~~~~i~ig~-----~~~~~~~~~v~d~~~~--~~~gIlG~d~ 94 (96)
T cd05483 46 TVQTANGRVRAARVRLDSLQIGG-----ITLRNVPAVVLPGDAL--GVDGLLGMDF 94 (96)
T ss_pred EEEecCCCccceEEEcceEEECC-----cEEeccEEEEeCCccc--CCceEeChHH
Confidence 67777787666666788999988 7788887776655433 4799999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.91 E-value=0.0061 Score=49.82 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=62.7
Q ss_pred CCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCCCcc
Q 038667 57 SNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRC 136 (411)
Q Consensus 57 ~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~ 136 (411)
.+|.|++++.|. ++++.++||||++.+-+....-... ..++.. ...
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L------gl~~~~--------------------------~~~ 53 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL------GLDLNR--------------------------LGY 53 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc------CCCccc--------------------------CCc
Confidence 578999999998 5799999999999998854311000 011110 111
Q ss_pred eeeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeeccCCCcceEEecCC
Q 038667 137 IYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTNRNFKFSGIFGLGI 194 (411)
Q Consensus 137 ~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~GilGLg~ 194 (411)
...+.=+.|......+.-|.+++++ +.+.++++....... ..+|+||+.+
T Consensus 54 ~~~~~ta~G~~~~~~~~l~~l~iG~-----~~~~nv~~~v~~~~~---~~~~LLGm~f 103 (121)
T TIGR02281 54 TVTVSTANGQIKAARVTLDRVAIGG-----IVVNDVDAMVAEGGA---LSESLLGMSF 103 (121)
T ss_pred eEEEEeCCCcEEEEEEEeCEEEECC-----EEEeCcEEEEeCCCc---CCceEcCHHH
Confidence 3334444565444556788999998 888888876664332 1479999863
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.35 E-value=0.039 Score=41.91 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=54.0
Q ss_pred EEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCCCcceeeEee
Q 038667 63 VNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRCIYTQLY 142 (411)
Q Consensus 63 ~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~~~~~~Y 142 (411)
+++.|+ .+++.+++|||++.+.+...-..... ..+.. ......+.-
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~--------------------------~~~~~~~~~ 46 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLG------LKPRP--------------------------KSVPISVSG 46 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcC------CCCcC--------------------------CceeEEEEe
Confidence 356777 48999999999998888543221110 00000 111334444
Q ss_pred CCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEeEeeeccCCCcceEEecC
Q 038667 143 LIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGCGFSTNRNFKFSGIFGLG 193 (411)
Q Consensus 143 ~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~GilGLg 193 (411)
.+|.........+.+++++ .++.++.|-.... ....+||||+-
T Consensus 47 ~~g~~~~~~~~~~~i~ig~-----~~~~~~~~~v~~~---~~~~~~iLG~d 89 (90)
T PF13650_consen 47 AGGSVTVYRGRVDSITIGG-----ITLKNVPFLVVDL---GDPIDGILGMD 89 (90)
T ss_pred CCCCEEEEEEEEEEEEECC-----EEEEeEEEEEECC---CCCCEEEeCCc
Confidence 4555445556677899987 7777777665551 23479999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.88 E-value=0.26 Score=40.35 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=28.5
Q ss_pred CCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCC
Q 038667 57 SNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPC 92 (411)
Q Consensus 57 ~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C 92 (411)
....+++++.|+ ++++.+++|||++.+++....+
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a 46 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACA 46 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHH
Confidence 456789999999 5899999999999999865433
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.85 E-value=0.77 Score=37.53 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=22.1
Q ss_pred eeeehhhcceeEEEEECCCCEEEE
Q 038667 377 SLIGMMAQQFYNVGYDIGRKQKTF 400 (411)
Q Consensus 377 ~IlG~~fl~~~yvvfD~~~~riGf 400 (411)
.|||..||+.+-.+.|+.+++|-|
T Consensus 101 ~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 101 FLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred EEecHHHHHhCCeEEECCCCEEEC
Confidence 899999999999999999998753
No 32
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.00 E-value=0.25 Score=41.18 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=25.4
Q ss_pred eeeehhhcceeEEEEECCCCEEEEecC
Q 038667 377 SLIGMMAQQFYNVGYDIGRKQKTFQRM 403 (411)
Q Consensus 377 ~IlG~~fl~~~yvvfD~~~~riGfa~~ 403 (411)
.|||..+|+.+...-|..+++|-|...
T Consensus 106 vILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 106 VILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eEeccchHHhCCCEEEccCCEEEEeCC
Confidence 999999999999999999999999754
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.89 E-value=0.19 Score=38.64 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=24.5
Q ss_pred EEEEEEeCCCCceEEEEEeCCCCceeEeCC
Q 038667 61 FYVNISIGQPPVPQFTAMDTGSSLLWVHCY 90 (411)
Q Consensus 61 Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~ 90 (411)
|++++.|+ ++++.+++||||+.+++.-+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57889999 58999999999999999654
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=88.62 E-value=0.89 Score=33.23 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=30.3
Q ss_pred CCCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCC
Q 038667 56 ISNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCR 93 (411)
Q Consensus 56 ~~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~ 93 (411)
...+.+++.+.||. +.+.+++|||++...|....+.
T Consensus 4 ~~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 4 PDPGLMYVPVSIGG--VQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred ccCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHHH
Confidence 35689999999995 9999999999999988765443
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=88.44 E-value=3.9 Score=30.90 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=20.3
Q ss_pred EEEeCCCCceEEEEEeCCCCceeEeCC
Q 038667 64 NISIGQPPVPQFTAMDTGSSLLWVHCY 90 (411)
Q Consensus 64 ~i~iGtP~q~~~~i~DTGSs~~wv~~~ 90 (411)
.+.|. ++++.+++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 35565 58999999999999999654
No 36
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=87.31 E-value=3.7 Score=32.56 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=19.7
Q ss_pred eeeehhhcceeEEEEECCCCEE
Q 038667 377 SLIGMMAQQFYNVGYDIGRKQK 398 (411)
Q Consensus 377 ~IlG~~fl~~~yvvfD~~~~ri 398 (411)
.+||..||+.+-++.|+.++++
T Consensus 86 ~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 86 PLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred cEecHHHHhhCCEEEehhhCcC
Confidence 8999999999999999987653
No 37
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=84.94 E-value=1.4 Score=34.20 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=23.0
Q ss_pred EEEEEeCCCCceEEEEEeCCCCceeEeCCC
Q 038667 62 YVNISIGQPPVPQFTAMDTGSSLLWVHCYP 91 (411)
Q Consensus 62 ~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~ 91 (411)
+++|.+. .+++.+++||||+.+-++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 5677787 479999999999999996553
No 38
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=83.76 E-value=3.9 Score=36.16 Aligned_cols=78 Identities=14% Similarity=0.032 Sum_probs=54.8
Q ss_pred CCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCcCCCCCCCCCCCCCCcc
Q 038667 57 SNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDCSPQLGTIFYPSRSSSYAYVPCDSEHCRYFPYARCSAYKHRC 136 (411)
Q Consensus 57 ~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~~~~C~~~~~~~ 136 (411)
.+|-|+++..|- +|++..++|||-+.+-+....- ..--|+... .+.
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA------~RlGid~~~--------------------------l~y 147 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDA------RRLGIDLNS--------------------------LDY 147 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHH------HHhCCCccc--------------------------cCC
Confidence 577899999998 6999999999999988855421 112233321 334
Q ss_pred eeeEeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEE
Q 038667 137 IYTQLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVV 173 (411)
Q Consensus 137 ~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~ 173 (411)
++.+.=++|......+--|.|.|++ +.+.++.
T Consensus 148 ~~~v~TANG~~~AA~V~Ld~v~IG~-----I~~~nV~ 179 (215)
T COG3577 148 TITVSTANGRARAAPVTLDRVQIGG-----IRVKNVD 179 (215)
T ss_pred ceEEEccCCccccceEEeeeEEEcc-----EEEcCch
Confidence 6667777787555667789999987 6666554
No 39
>PF13650 Asp_protease_2: Aspartyl protease
Probab=81.03 E-value=2 Score=32.16 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.3
Q ss_pred CcEEEecccccccccHHHHHHH
Q 038667 275 GGVMIDSGTDVTWLVKEAYEAL 296 (411)
Q Consensus 275 ~~~iiDSGTt~~~lp~~~~~~l 296 (411)
..++||||++.+.+.++.++++
T Consensus 10 ~~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 10 VRFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEEcCCCCcEEECHHHHHHc
Confidence 4699999999999998888776
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=77.38 E-value=4.7 Score=29.35 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=19.7
Q ss_pred CcEEEecccccccccHHHHHHH
Q 038667 275 GGVMIDSGTDVTWLVKEAYEAL 296 (411)
Q Consensus 275 ~~~iiDSGTt~~~lp~~~~~~l 296 (411)
..+++|||.+..+++.++.+.+
T Consensus 20 ~~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 20 VKALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEEEeCCCcceecCHHHHHHh
Confidence 3599999999999999988877
No 41
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=77.22 E-value=3.5 Score=31.42 Aligned_cols=30 Identities=23% Similarity=0.540 Sum_probs=24.6
Q ss_pred EEEECCeEEecCCCcccccCCCCcEEEecccccccccHHHHHHH
Q 038667 253 AISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVKEAYEAL 296 (411)
Q Consensus 253 ~i~v~g~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 296 (411)
.+.|+|+.+ .+.+|||++.+.++.+.+.++
T Consensus 4 ~~~Ing~~i--------------~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL--------------KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE--------------EEEEcCCcceEEeCHHHHHHh
Confidence 366777764 589999999999999888765
No 42
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=75.95 E-value=11 Score=30.91 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=23.3
Q ss_pred EEEECCeEEecCCCcccccCCCCcEEEecccccccccHHHHHHH
Q 038667 253 AISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVKEAYEAL 296 (411)
Q Consensus 253 ~i~v~g~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 296 (411)
.++++|+.+ .++||||+..+.++.+.++++
T Consensus 28 ~~~ing~~v--------------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV--------------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE--------------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE--------------EEEEeCCCCccccCHHHHHHc
Confidence 467788764 599999999999999998883
No 43
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=75.77 E-value=7.5 Score=37.67 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=33.1
Q ss_pred EeeCCCCeeeeeEEEEEEEeeCCCCCceeeecEEEEe----------Eeeec-----cCCCcceEEecCCCC
Q 038667 140 QLYLIGPETSVFVSTEQLTFKNTDESTIHVQDVVFGC----------GFSTN-----RNFKFSGIFGLGIGR 196 (411)
Q Consensus 140 ~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~----------~~~~~-----~~~~~~GilGLg~~~ 196 (411)
..|++|. +-|-+.+-.|+|+++.. ..++-|.++- ..... ....++||||+|.-.
T Consensus 82 ~~F~sgy-tWGsVr~AdV~igge~A--~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 82 AQFASGY-TWGSVRTADVTIGGETA--SSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred hhccCcc-cccceEEEEEEEcCeec--cccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Confidence 5677776 68999999999998522 2223233322 11110 234689999998653
No 44
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=73.94 E-value=4.4 Score=32.93 Aligned_cols=37 Identities=35% Similarity=0.515 Sum_probs=27.4
Q ss_pred CCCceEEEeeEEEECCeEEecCCCcccccCCCCcEEEecccccccccHHHHHHH
Q 038667 243 IDGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVKEAYEAL 296 (411)
Q Consensus 243 ~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 296 (411)
...+|.+. +.|+|+. ..++||||.+.+.++.++.+++
T Consensus 8 ~~g~~~v~---~~InG~~--------------~~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRN--------------VRFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEE--------------EEEEEECCCCcEEcCHHHHHHc
Confidence 34555443 5567774 4699999999999999988664
No 45
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=73.49 E-value=6.5 Score=29.69 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.0
Q ss_pred CcEEEecccccccccHHHHHHH
Q 038667 275 GGVMIDSGTDVTWLVKEAYEAL 296 (411)
Q Consensus 275 ~~~iiDSGTt~~~lp~~~~~~l 296 (411)
..++||||++.+.++.+..+++
T Consensus 14 ~~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 14 VRFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEEECCCCcEEcCHHHHHHc
Confidence 4699999999999999877665
No 46
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=73.14 E-value=4.8 Score=30.69 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=20.6
Q ss_pred EEEeCCCCceEEEEEeCCCCceeEeCC
Q 038667 64 NISIGQPPVPQFTAMDTGSSLLWVHCY 90 (411)
Q Consensus 64 ~i~iGtP~q~~~~i~DTGSs~~wv~~~ 90 (411)
.+.++ .|.+.+++|||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 69999999999999998643
No 47
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=69.65 E-value=11 Score=28.83 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=18.1
Q ss_pred CCcEEEecccccccccHHHHHH
Q 038667 274 GGGVMIDSGTDVTWLVKEAYEA 295 (411)
Q Consensus 274 ~~~~iiDSGTt~~~lp~~~~~~ 295 (411)
+...+||||.....+|....+.
T Consensus 9 ~~~fLVDTGA~vSviP~~~~~~ 30 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASSTKK 30 (89)
T ss_pred CcEEEEeCCCceEeeccccccc
Confidence 5789999999999999765543
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=65.88 E-value=8.2 Score=29.10 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=19.5
Q ss_pred CcEEEecccccccccHHHHHHH
Q 038667 275 GGVMIDSGTDVTWLVKEAYEAL 296 (411)
Q Consensus 275 ~~~iiDSGTt~~~lp~~~~~~l 296 (411)
..+++|||.+.+.+++...+.+
T Consensus 10 ~~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 10 IVFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEEECCCCeEEECHHHhhhc
Confidence 3589999999999999988875
No 49
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=56.40 E-value=80 Score=27.12 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=18.9
Q ss_pred CcEEEecccccccccHHHHHHHH
Q 038667 275 GGVMIDSGTDVTWLVKEAYEALR 297 (411)
Q Consensus 275 ~~~iiDSGTt~~~lp~~~~~~l~ 297 (411)
..++||||++..+.-.++.+.|-
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEeCCCccceeehhhHHhhC
Confidence 57999999999988887776654
No 50
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=53.40 E-value=19 Score=30.86 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=22.0
Q ss_pred EEEEEeCCCCceEEEEEeCCCCceeEeCC
Q 038667 62 YVNISIGQPPVPQFTAMDTGSSLLWVHCY 90 (411)
Q Consensus 62 ~~~i~iGtP~q~~~~i~DTGSs~~wv~~~ 90 (411)
...+.++....++.++|||||...++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34445555568999999999999988654
No 51
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=51.69 E-value=14 Score=28.38 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=14.9
Q ss_pred CcEEEecccccccccHH
Q 038667 275 GGVMIDSGTDVTWLVKE 291 (411)
Q Consensus 275 ~~~iiDSGTt~~~lp~~ 291 (411)
..++||||+..+.++.+
T Consensus 17 i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 17 IKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEETTBSSEEESSG
T ss_pred EEEEEecCCCcceeccc
Confidence 35999999999999975
No 52
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=47.56 E-value=23 Score=27.15 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.0
Q ss_pred CcEEEecccccccccHHHHHHHH
Q 038667 275 GGVMIDSGTDVTWLVKEAYEALR 297 (411)
Q Consensus 275 ~~~iiDSGTt~~~lp~~~~~~l~ 297 (411)
..+.+|||++...||...+..+-
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 56999999999999998887764
No 53
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=45.90 E-value=61 Score=28.84 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=20.0
Q ss_pred eeeehhhcceeEEEEECCCCEEEEec
Q 038667 377 SLIGMMAQQFYNVGYDIGRKQKTFQR 402 (411)
Q Consensus 377 ~IlG~~fl~~~yvvfD~~~~riGfa~ 402 (411)
.|||++|+|.|+=-...+ .+|-|..
T Consensus 93 ~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 93 IILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred EEecchHHHhcCCcEEEc-cEEEEEe
Confidence 999999999887666665 4788865
No 54
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=42.75 E-value=1.8e+02 Score=28.26 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=55.7
Q ss_pred cEEEecccccccccHHHHHH--HHHHHHHHhhcCCCcCCCCCCCCccccccCCCccCCCeEEEEEcCC--cEEEEcCCce
Q 038667 276 GVMIDSGTDVTWLVKEAYEA--LRDEVMIRLEGEQMRSYSWPDKLCYHGIMSSDLKGFPTVRFHFRGG--AKLALEKDSM 351 (411)
Q Consensus 276 ~~iiDSGTt~~~lp~~~~~~--l~~~l~~~~~g~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~~g--~~~~l~~~~y 351 (411)
.+.||||+-.+.+...-.+. |-..+.++..|. .+ .+| +..+- | ....|.-.+.
T Consensus 248 KAfVDsGaq~timS~~Caer~gL~rlid~r~~g~--a~------------------gvg--~~ki~-g~Ih~~~lki~~~ 304 (380)
T KOG0012|consen 248 KAFVDSGAQTTIMSAACAERCGLNRLIDKRFQGE--AR------------------GVG--TEKIL-GRIHQAQLKIEDL 304 (380)
T ss_pred EEEEcccchhhhhhHHHHHHhChHHHhhhhhhcc--cc------------------CCC--ccccc-ceeEEEEEEeccE
Confidence 59999999999888776665 344444444331 10 112 11111 1 1122222222
Q ss_pred EEEcCCCeEE-EEEEeCCCCCCcccceeeehhhcceeEEEEECCCCEEEEecCC
Q 038667 352 FYQPRPDAFC-MAVNPASINNRYVNFSLIGMMAQQFYNVGYDIGRKQKTFQRMD 404 (411)
Q Consensus 352 ~~~~~~~~~C-~~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~riGfa~~~ 404 (411)
.+ .| +..+...+. + ..||...||.+--.-|++++++-|+...
T Consensus 305 ~l------~c~ftV~d~~~~-d----~llGLd~Lrr~~ccIdL~~~~L~ig~~~ 347 (380)
T KOG0012|consen 305 YL------PCSFTVLDRRDM-D----LLLGLDMLRRHQCCIDLKTNVLRIGNTE 347 (380)
T ss_pred ee------ccceEEecCCCc-c----hhhhHHHHHhccceeecccCeEEecCCC
Confidence 22 37 444433222 2 8999999999999999999998887643
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=42.11 E-value=14 Score=30.15 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=24.9
Q ss_pred CCceEEEEEEeCCCCceEEEEEeCCCCceeEeCCCCCCC
Q 038667 57 SNSLFYVNISIGQPPVPQFTAMDTGSSLLWVHCYPCRDC 95 (411)
Q Consensus 57 ~~~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~~C~~C 95 (411)
.....|+++.++ .+++.+++|||...+-+..+-+..|
T Consensus 21 ~v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 21 QVSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp -----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHT
T ss_pred CcceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHc
Confidence 356789999999 5999999999999988865544446
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=35.74 E-value=24 Score=28.64 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=18.6
Q ss_pred eeeehhhcceeEEEEECCCCEE
Q 038667 377 SLIGMMAQQFYNVGYDIGRKQK 398 (411)
Q Consensus 377 ~IlG~~fl~~~yvvfD~~~~ri 398 (411)
.+||-..|+..-.++|...+++
T Consensus 96 ~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 96 PLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred cchhhhhhhhccEEEcCCcceE
Confidence 6899999999999999877665
No 57
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=35.29 E-value=48 Score=26.14 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=19.7
Q ss_pred EEEEeCCCCc----eEEEEEeCCCCcee-Ee
Q 038667 63 VNISIGQPPV----PQFTAMDTGSSLLW-VH 88 (411)
Q Consensus 63 ~~i~iGtP~q----~~~~i~DTGSs~~w-v~ 88 (411)
++|.|..|.| ++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 5788888733 68999999998664 54
No 58
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=33.63 E-value=66 Score=28.69 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=28.4
Q ss_pred CCCceEEEeeEEEECCeEEecCCCcccccCCCCcEEEecccccccccHHHHHHH
Q 038667 243 IDGHYYITLEAISVDGRMLDINPNIFKRDDSGGGVMIDSGTDVTWLVKEAYEAL 296 (411)
Q Consensus 243 ~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 296 (411)
.+.||.++ ..|||+.+ ..++|||.|.+.|+++..+.+
T Consensus 102 ~~GHF~a~---~~VNGk~v--------------~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 102 RDGHFEAN---GRVNGKKV--------------DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCCcEEEE---EEECCEEE--------------EEEEecCcceeecCHHHHHHh
Confidence 46667644 67888875 589999999999998876553
No 59
>PF15409 PH_8: Pleckstrin homology domain
Probab=32.03 E-value=88 Score=23.90 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=24.0
Q ss_pred CCcEEEecccccccc---cHHHHHHHHHHHHH
Q 038667 274 GGGVMIDSGTDVTWL---VKEAYEALRDEVMI 302 (411)
Q Consensus 274 ~~~~iiDSGTt~~~l---p~~~~~~l~~~l~~ 302 (411)
...+.||||..+.+| .+..++..+++|+.
T Consensus 56 ~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 56 SRRIDIDSGDEIWHLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred CCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHh
Confidence 578999999988876 57788888888864
No 60
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=23.21 E-value=1.2e+02 Score=25.14 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=24.4
Q ss_pred ceEEEEEEeCCCCceEEEEEeCCCCceeEeCC
Q 038667 59 SLFYVNISIGQPPVPQFTAMDTGSSLLWVHCY 90 (411)
Q Consensus 59 ~~Y~~~i~iGtP~q~~~~i~DTGSs~~wv~~~ 90 (411)
-.-.+.+.|.+ ++..++||+|++...|...
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 45677788885 8899999999999988554
No 61
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=22.76 E-value=96 Score=28.79 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=22.9
Q ss_pred ceEEEE---EEeCC---CCceEEEEEeCCCCceeEeCC
Q 038667 59 SLFYVN---ISIGQ---PPVPQFTAMDTGSSLLWVHCY 90 (411)
Q Consensus 59 ~~Y~~~---i~iGt---P~q~~~~i~DTGSs~~wv~~~ 90 (411)
..|.++ |.||. +.....++||||++++.++..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 466655 57874 223467999999999999654
No 62
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=21.19 E-value=1e+02 Score=29.29 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=22.3
Q ss_pred ceEEEE---EEeCCC-----CceEEEEEeCCCCceeEeCC
Q 038667 59 SLFYVN---ISIGQP-----PVPQFTAMDTGSSLLWVHCY 90 (411)
Q Consensus 59 ~~Y~~~---i~iGtP-----~q~~~~i~DTGSs~~wv~~~ 90 (411)
..|.++ |.||.. .....++||||++.+++|..
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 455554 577742 23467999999999998753
Done!