BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038668
(83 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DHI|B Chain B, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|A Chain A, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|E Chain E, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|I Chain I, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|L Chain L, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
Length = 284
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 32 QMVKVQVLEREIGLLQEELKSVEDVQ----------PASICCKEVDDFVGA 72
Q + V + EI L ++LK++ED Q P SI C E D+ A
Sbjct: 13 QAAEAVVTDDEIVLQDQQLKTIEDEQKSVPLVATLAPFSILCAEYDNETSA 63
>pdb|3IS7|A Chain A, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|B Chain B, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|C Chain C, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|D Chain D, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|E Chain E, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|F Chain F, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|G Chain G, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|H Chain H, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|I Chain I, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|J Chain J, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|K Chain K, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|L Chain L, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|M Chain M, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|N Chain N, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|O Chain O, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|P Chain P, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|Q Chain Q, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|R Chain R, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|S Chain S, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|T Chain T, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|U Chain U, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|V Chain V, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|W Chain W, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS7|X Chain X, Structure Of Mineralized Bfrb From Pseudomonas Aeruginosa
To 2.1a Resolution
pdb|3IS8|A Chain A, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|B Chain B, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|C Chain C, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|D Chain D, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|E Chain E, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|F Chain F, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|G Chain G, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|H Chain H, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|I Chain I, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|J Chain J, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|K Chain K, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|L Chain L, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|M Chain M, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|N Chain N, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|O Chain O, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|P Chain P, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|Q Chain Q, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|R Chain R, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|S Chain S, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|T Chain T, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|U Chain U, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|V Chain V, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|W Chain W, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3IS8|X Chain X, Structure Of Mineralized Bfrb Soaked With Feso4 From
Pseudomonas Aeruginosa To 2.25a Resolution
pdb|3ISE|A Chain A, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|B Chain B, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|C Chain C, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|D Chain D, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|E Chain E, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|F Chain F, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|G Chain G, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|H Chain H, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|I Chain I, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|J Chain J, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|K Chain K, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|L Chain L, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|M Chain M, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|N Chain N, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|O Chain O, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|P Chain P, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|Q Chain Q, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|R Chain R, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|S Chain S, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|T Chain T, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|U Chain U, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|V Chain V, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|W Chain W, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISE|X Chain X, Structure Of Mineralized Bfrb (Double Soak) From
Pseudomonas Aeruginosa To 2.8a Resolution
pdb|3ISF|A Chain A, Structure Of Non-Mineralized Bfrb (As-Isolated) From
Pseudomonas Aeruginosa To 2.07a Resolution
pdb|3ISF|B Chain B, Structure Of Non-Mineralized Bfrb (As-Isolated) From
Pseudomonas Aeruginosa To 2.07a Resolution
pdb|3ISF|C Chain C, Structure Of Non-Mineralized Bfrb (As-Isolated) From
Pseudomonas Aeruginosa To 2.07a Resolution
pdb|3ISF|D Chain D, Structure Of Non-Mineralized Bfrb (As-Isolated) From
Pseudomonas Aeruginosa To 2.07a Resolution
pdb|3ISF|E Chain E, Structure Of Non-Mineralized Bfrb (As-Isolated) From
Pseudomonas Aeruginosa To 2.07a Resolution
pdb|3ISF|F Chain F, Structure Of Non-Mineralized Bfrb (As-Isolated) From
Pseudomonas Aeruginosa To 2.07a Resolution
pdb|4E6K|A Chain A, 2.0 A Resolution Structure Of Pseudomonas Aeruginosa
Bacterioferritin (Bfrb) In Complex With Bacterioferritin
Associated Ferredoxin (Bfd)
pdb|4E6K|B Chain B, 2.0 A Resolution Structure Of Pseudomonas Aeruginosa
Bacterioferritin (Bfrb) In Complex With Bacterioferritin
Associated Ferredoxin (Bfd)
pdb|4E6K|C Chain C, 2.0 A Resolution Structure Of Pseudomonas Aeruginosa
Bacterioferritin (Bfrb) In Complex With Bacterioferritin
Associated Ferredoxin (Bfd)
pdb|4E6K|D Chain D, 2.0 A Resolution Structure Of Pseudomonas Aeruginosa
Bacterioferritin (Bfrb) In Complex With Bacterioferritin
Associated Ferredoxin (Bfd)
pdb|4E6K|E Chain E, 2.0 A Resolution Structure Of Pseudomonas Aeruginosa
Bacterioferritin (Bfrb) In Complex With Bacterioferritin
Associated Ferredoxin (Bfd)
pdb|4E6K|F Chain F, 2.0 A Resolution Structure Of Pseudomonas Aeruginosa
Bacterioferritin (Bfrb) In Complex With Bacterioferritin
Associated Ferredoxin (Bfd)
Length = 158
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 49 ELKSVEDVQPASICCKEVDDFV 70
ELK+ +D++ A + C++V D+V
Sbjct: 94 ELKATKDLREAIVHCEQVHDYV 115
>pdb|1JDY|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1JDY|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|3PMG|A Chain A, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
pdb|3PMG|B Chain B, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
Length = 561
Score = 25.0 bits (53), Expect = 10.0, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 26 LYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPA--SICCKEVDDFVGAKPDP 76
L G R +++ + +G +++ E PA ++ C ++DF G PDP
Sbjct: 211 LSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDP 263
>pdb|1LXT|A Chain A, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1LXT|B Chain B, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1C47|A Chain A, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C47|B Chain B, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C4G|A Chain A, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
pdb|1C4G|B Chain B, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
Length = 561
Score = 25.0 bits (53), Expect = 10.0, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 26 LYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPA--SICCKEVDDFVGAKPDP 76
L G R +++ + +G +++ E PA ++ C ++DF G PDP
Sbjct: 211 LSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDP 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,332,707
Number of Sequences: 62578
Number of extensions: 70596
Number of successful extensions: 206
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 4
length of query: 83
length of database: 14,973,337
effective HSP length: 51
effective length of query: 32
effective length of database: 11,781,859
effective search space: 377019488
effective search space used: 377019488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)