BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038668
         (83 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6AWT8|GG3_ARATH Guanine nucleotide-binding protein subunit gamma 3 OS=Arabidopsis
          thaliana GN=GG3 PE=2 SV=1
          Length = 251

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/54 (64%), Positives = 42/54 (77%)

Query: 25 DLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLV 78
          DLYGKRR+  +VQ+LEREIG L+ E+K +E VQPAS C KEV DFV A  DPL+
Sbjct: 43 DLYGKRREAARVQMLEREIGFLEGEIKFIEGVQPASRCIKEVSDFVVANSDPLI 96


>sp|Q9FDX9|GG1_ARATH Guanine nucleotide-binding protein subunit gamma 1 OS=Arabidopsis
          thaliana GN=GG1 PE=1 SV=1
          Length = 98

 Score = 39.7 bits (91), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 28 GKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMYD 82
          GK R + ++  +E+E+  L++ELK VE+    S  C+E+   +   PDPL+ + +
Sbjct: 19 GKHRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGPDPLLPLTN 73


>sp|Q93V47|GG2_ARATH Guanine nucleotide-binding protein subunit gamma 2 OS=Arabidopsis
          thaliana GN=GG2 PE=1 SV=1
          Length = 100

 Score = 34.3 bits (77), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 24 LDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLV 78
          +D  GK R   +++ LE+E   L+EEL+ +E +  AS  CKE  D V +KPDPL+
Sbjct: 17 VDTRGKHRIQAELKRLEQEARFLEEELEQLEKMDNASASCKEFLDSVDSKPDPLL 71


>sp|Q7Z7A1|CNTRL_HUMAN Centriolin OS=Homo sapiens GN=CNTRL PE=1 SV=2
          Length = 2325

 Score = 32.0 bits (71), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 27  YGKRRQMVKVQVLEREIGLLQEELKSVEDVQ 57
           + KR+   ++Q +E EI  LQE LKS+E++Q
Sbjct: 900 FDKRQHEARIQQMENEIHYLQENLKSMEEIQ 930


>sp|A2AL36|CNTRL_MOUSE Centriolin OS=Mus musculus GN=Cntrl PE=2 SV=2
          Length = 2334

 Score = 31.6 bits (70), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 27  YGKRRQMVKVQVLEREIGLLQEELKSVEDVQ 57
           + KR+   ++Q LE EI  LQE LKS+E +Q
Sbjct: 901 FDKRQHNARIQQLENEIHYLQENLKSMEKIQ 931


>sp|A3GHT9|EFGM_PICST Elongation factor G, mitochondrial OS=Scheffersomyces stipitis
           (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
           Y-11545) GN=MEF1 PE=3 SV=2
          Length = 775

 Score = 30.4 bits (67), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 9/58 (15%)

Query: 29  KRRQMVKVQVLEREIGLLQEELKSVEDVQPASIC------CKEVDDFVGAKPDPLVAM 80
           K  + VKV  L R   +   +++ V +V P  IC      C   D F+GA  D L+AM
Sbjct: 424 KTGKKVKVARLVR---MHSNDMEDVNEVGPGEICATFGIDCASGDTFMGANSDQLIAM 478


>sp|Q6CMB5|SP110_KLULA Spindle pole body component 110 OS=Kluyveromyces lactis (strain
           ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
           Y-1140 / WM37) GN=SPC110 PE=3 SV=1
          Length = 858

 Score = 28.9 bits (63), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 30  RRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKE 65
           +R   + Q LERE+ LLQEEL S+ +     I  K+
Sbjct: 326 QRNEHQRQSLEREVSLLQEELSSIRETHQKIITHKD 361


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.135    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,808,518
Number of Sequences: 539616
Number of extensions: 994924
Number of successful extensions: 3270
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3261
Number of HSP's gapped (non-prelim): 12
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)