Query 038668
Match_columns 83
No_of_seqs 55 out of 57
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 23:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_G GT-gamma; complex (GTP- 96.4 0.0012 4E-08 42.0 1.7 52 27-80 10-63 (73)
2 3v5w_G G gamma-I, guanine nucl 91.2 0.26 8.7E-06 31.8 3.9 42 36-79 15-58 (77)
3 4dac_A Computationally designe 88.8 0.46 1.6E-05 25.6 3.0 23 31-53 5-27 (28)
4 1fxk_C Protein (prefoldin); ar 88.0 0.61 2.1E-05 30.3 3.9 43 30-72 4-46 (133)
5 3ra3_B P2F; coiled coil domain 87.8 0.63 2.1E-05 25.1 3.2 25 30-54 3-27 (28)
6 2wg5_A General control protein 87.1 0.67 2.3E-05 30.3 3.7 35 32-66 12-46 (109)
7 2er8_A Regulatory protein Leu3 82.7 0.77 2.6E-05 26.6 2.2 23 33-55 48-70 (72)
8 2pbi_A Regulator of G-protein 82.4 0.6 2.1E-05 36.9 2.1 41 36-78 221-263 (424)
9 2l5g_B Putative uncharacterize 81.4 2 6.9E-05 25.0 3.6 27 30-56 12-38 (42)
10 2ke4_A CDC42-interacting prote 81.0 1.5 5.1E-05 28.7 3.3 33 27-59 15-47 (98)
11 1dh3_A Transcription factor CR 80.1 2.9 9.8E-05 24.5 4.1 28 27-54 15-42 (55)
12 3m9b_A Proteasome-associated A 79.9 1.7 5.8E-05 33.0 3.7 25 31-55 72-96 (251)
13 2lw1_A ABC transporter ATP-bin 79.1 2.5 8.5E-05 26.3 3.8 25 31-55 19-43 (89)
14 1pwb_A SP-D, PSP-D, pulmonary 78.9 1.7 5.7E-05 28.5 3.0 20 36-55 33-52 (177)
15 1htn_A Tetranectin; plasminoge 78.7 0.84 2.9E-05 30.1 1.5 32 33-64 21-52 (182)
16 1zme_C Proline utilization tra 78.7 1.8 6.1E-05 24.7 2.8 20 36-55 46-65 (70)
17 1nkp_B MAX protein, MYC proto- 77.5 2.8 9.6E-05 25.5 3.6 21 34-54 61-81 (83)
18 2apo_B Ribosome biogenesis pro 77.5 2.3 7.7E-05 26.0 3.1 28 5-36 24-51 (60)
19 3d24_B Peroxisome proliferator 77.3 1 3.6E-05 24.0 1.3 21 57-77 4-24 (26)
20 2jn6_A Protein CGL2762, transp 77.2 0.37 1.3E-05 29.0 -0.5 26 32-57 64-89 (97)
21 2lw9_A Unconventionnal myosin- 76.8 2.2 7.4E-05 25.9 2.8 20 31-50 3-22 (51)
22 1a93_B MAX protein, coiled coi 76.6 2.9 9.8E-05 23.4 3.1 23 32-54 12-34 (34)
23 1uk5_A BAG-family molecular ch 74.5 6.7 0.00023 26.5 5.1 31 25-55 21-51 (111)
24 1rtm_1 Mannose-binding protein 74.5 3 0.0001 26.3 3.3 24 33-56 3-26 (149)
25 1t3j_A Mitofusin 1; coiled coi 74.1 3.3 0.00011 27.5 3.4 29 37-65 50-78 (96)
26 2wuj_A Septum site-determining 73.3 3.9 0.00013 24.0 3.3 25 31-55 31-55 (57)
27 3bbp_D GRIP and coiled-coil do 72.5 3.5 0.00012 26.4 3.1 24 34-57 43-66 (71)
28 2rjz_A PILO protein; structura 72.5 2.7 9.4E-05 28.3 2.8 46 25-70 6-51 (147)
29 1nkp_A C-MYC, MYC proto-oncoge 70.1 5.7 0.0002 24.9 3.8 25 31-55 63-87 (88)
30 3viq_B Mating-type switching p 70.1 5.9 0.0002 25.7 3.9 26 29-54 3-28 (85)
31 1buu_A Protein (mannose-bindin 69.8 4.3 0.00015 26.4 3.3 24 32-55 21-44 (168)
32 1nlw_A MAD protein, MAX dimeri 69.6 5.3 0.00018 24.8 3.5 21 32-52 59-79 (80)
33 2z5i_A TM, general control pro 68.2 4.3 0.00015 23.8 2.7 18 35-52 13-30 (52)
34 2zdi_C Prefoldin subunit alpha 68.2 2.1 7.2E-05 28.5 1.5 52 30-81 12-67 (151)
35 1zme_C Proline utilization tra 67.3 5.8 0.0002 22.4 3.1 24 29-52 46-69 (70)
36 3qx3_A DNA topoisomerase 2-bet 66.9 7 0.00024 34.0 4.8 40 33-72 733-772 (803)
37 4fla_A Regulation of nuclear P 66.6 12 0.0004 25.9 5.1 40 36-75 102-149 (152)
38 3pbf_A Pulmonary surfactant-as 66.3 6.8 0.00023 24.4 3.5 26 30-56 5-30 (148)
39 2aus_D NOP10, ribosome biogene 65.4 4.1 0.00014 24.9 2.3 14 23-36 37-50 (60)
40 3trt_A Vimentin; cytoskeleton, 65.0 9.3 0.00032 22.7 3.8 23 33-55 55-77 (77)
41 1jnm_A Proto-oncogene C-JUN; B 64.6 7.6 0.00026 22.7 3.3 22 32-53 20-41 (62)
42 3l4j_A DNA topoisomerase 2; to 64.3 7.8 0.00027 33.4 4.6 39 33-71 706-744 (757)
43 2ovc_A Potassium voltage-gated 64.3 11 0.00037 20.7 3.7 29 27-55 3-31 (33)
44 3viq_A SWI5-dependent recombin 64.1 15 0.00052 24.7 5.1 18 30-47 10-27 (122)
45 1ci6_A Transcription factor AT 64.0 7.5 0.00026 23.1 3.3 20 35-54 31-50 (63)
46 1xaw_A Occludin; coiled-coil, 63.7 9.8 0.00034 26.6 4.3 40 30-69 62-102 (140)
47 3kin_B Kinesin heavy chain; mo 62.8 8.6 0.0003 25.2 3.7 22 31-52 93-114 (117)
48 1cxz_B Protein (PKN); protein- 62.1 9 0.00031 24.8 3.6 27 29-55 58-84 (86)
49 3m91_A Proteasome-associated A 62.1 11 0.00039 22.1 3.7 24 30-53 26-49 (51)
50 2dgc_A Protein (GCN4); basic d 62.0 13 0.00045 22.2 4.1 28 28-55 24-51 (63)
51 1yzm_A FYVE-finger-containing 60.8 7.6 0.00026 23.1 2.8 27 29-55 23-49 (51)
52 2yf2_A C4B binding protein; im 60.4 9.9 0.00034 23.7 3.4 25 30-54 30-54 (65)
53 4dzn_A Coiled-coil peptide CC- 60.1 9.6 0.00033 21.0 2.9 19 35-53 3-21 (33)
54 3pjs_K KCSA, voltage-gated pot 59.8 8.9 0.00031 25.6 3.4 29 31-59 135-163 (166)
55 1hwt_C Protein (heme activator 59.8 5.8 0.0002 23.1 2.2 20 34-53 58-77 (81)
56 3ol1_A Vimentin; structural ge 59.7 9.9 0.00034 24.9 3.5 18 39-56 88-105 (119)
57 2wt7_A Proto-oncogene protein 59.7 9.1 0.00031 22.5 3.1 24 31-54 20-43 (63)
58 1lq7_A Alpha3W; three helix bu 59.6 5.9 0.0002 24.8 2.3 19 35-53 49-67 (67)
59 1hjb_A Ccaat/enhancer binding 58.5 11 0.00038 24.2 3.5 8 72-79 75-82 (87)
60 1nkp_B MAX protein, MYC proto- 58.3 14 0.00046 22.4 3.8 23 32-54 52-74 (83)
61 2wvr_A Geminin; DNA replicatio 57.9 16 0.00054 27.3 4.7 35 35-69 123-157 (209)
62 1fxk_A Prefoldin; archaeal pro 57.8 13 0.00043 22.7 3.6 23 31-53 12-34 (107)
63 2ve7_A Kinetochore protein HEC 57.7 7 0.00024 29.3 2.8 24 35-58 186-209 (315)
64 1z0k_B FYVE-finger-containing 57.2 8.6 0.00029 24.2 2.7 28 28-55 40-67 (69)
65 3eff_K Voltage-gated potassium 57.2 12 0.00042 23.9 3.6 27 34-60 111-137 (139)
66 3efg_A Protein SLYX homolog; x 56.3 7.6 0.00026 24.2 2.4 25 31-55 39-63 (78)
67 2zqm_A Prefoldin beta subunit 56.0 14 0.00048 22.8 3.6 21 32-52 18-38 (117)
68 4fz4_A 0197-18KD, uncharacteri 55.9 11 0.00039 26.9 3.5 27 33-59 3-29 (154)
69 1am9_A Srebp-1A, protein (ster 55.3 7.3 0.00025 24.0 2.2 19 36-54 52-70 (82)
70 3iv1_A Tumor susceptibility ge 54.7 18 0.00061 23.1 4.0 27 27-53 39-65 (78)
71 2yy0_A C-MYC-binding protein; 54.6 13 0.00046 21.7 3.2 23 31-53 23-45 (53)
72 1j8b_A YBAB; hypothetical prot 54.5 11 0.00036 24.8 3.0 28 31-58 12-39 (112)
73 2pr5_A Blue-light photorecepto 54.3 12 0.00041 21.5 2.9 28 26-53 104-131 (132)
74 1ci6_A Transcription factor AT 54.2 14 0.00048 21.9 3.3 25 30-54 19-43 (63)
75 2akf_A Coronin-1A; coiled coil 53.7 17 0.00057 20.0 3.2 26 31-56 3-28 (32)
76 2zqm_A Prefoldin beta subunit 53.2 17 0.00059 22.4 3.7 20 34-53 84-103 (117)
77 1hlo_A Protein (transcription 53.2 11 0.00039 22.7 2.8 19 36-54 59-77 (80)
78 1ybx_A Conserved hypothetical 53.0 12 0.0004 26.0 3.1 30 29-58 43-72 (143)
79 2ve7_A Kinetochore protein HEC 52.9 16 0.00055 27.3 4.1 39 29-67 187-233 (315)
80 1gd2_E Transcription factor PA 52.8 20 0.00069 22.1 3.9 25 29-53 24-48 (70)
81 1fxk_A Prefoldin; archaeal pro 52.5 15 0.0005 22.4 3.3 19 35-53 80-98 (107)
82 1wlq_A Geminin; coiled-coil; 2 52.4 24 0.00084 22.9 4.4 22 35-56 46-67 (83)
83 1ic2_A Tropomyosin alpha chain 52.3 14 0.00048 22.5 3.1 22 33-54 40-61 (81)
84 2p22_A Suppressor protein STP2 52.2 16 0.00056 26.0 3.9 29 27-55 56-84 (174)
85 2yy0_A C-MYC-binding protein; 51.9 18 0.00062 21.1 3.4 21 34-54 19-39 (53)
86 2nov_A DNA topoisomerase 4 sub 51.8 19 0.00065 29.4 4.6 50 27-76 349-398 (496)
87 4gfh_A DNA topoisomerase 2; to 51.7 18 0.00061 32.1 4.8 38 34-71 1127-1164(1177)
88 3rrk_A V-type ATPase 116 kDa s 51.7 13 0.00044 27.0 3.3 24 30-53 229-252 (357)
89 3mq9_A Bone marrow stromal ant 51.6 16 0.00055 27.3 3.9 23 32-54 441-463 (471)
90 1go4_E MAD1 (mitotic arrest de 51.6 15 0.00053 24.3 3.4 27 29-55 14-40 (100)
91 3mq7_A Bone marrow stromal ant 51.3 15 0.00051 25.4 3.4 19 33-51 70-88 (121)
92 1lwu_B Fibrinogen beta chain; 51.3 12 0.0004 28.7 3.1 39 31-69 32-82 (323)
93 3kqg_A Langerin, C-type lectin 51.0 11 0.00039 24.2 2.7 28 29-56 11-38 (182)
94 1uuj_A Platelet-activating fac 50.5 5.9 0.0002 25.8 1.2 23 30-52 61-83 (88)
95 3ni0_A Bone marrow stromal ant 50.3 15 0.00052 24.6 3.2 24 31-54 64-87 (99)
96 1t3j_A Mitofusin 1; coiled coi 49.8 26 0.00087 23.1 4.3 41 31-71 51-92 (96)
97 2lw1_A ABC transporter ATP-bin 48.8 29 0.00099 21.3 4.2 32 23-54 18-49 (89)
98 3cve_A Homer protein homolog 1 48.6 16 0.00056 22.9 3.0 34 28-61 1-34 (72)
99 3a2a_A Voltage-gated hydrogen 48.6 17 0.00059 22.3 3.1 25 32-56 23-47 (58)
100 1j2z_A Acyl-[acyl-carrier-prot 48.1 7.2 0.00024 27.7 1.4 34 45-78 223-256 (270)
101 2vz4_A Tipal, HTH-type transcr 47.9 17 0.00058 22.5 3.1 25 31-55 78-102 (108)
102 3vmx_A Voltage-gated hydrogen 47.9 22 0.00076 21.0 3.4 26 30-55 14-39 (48)
103 1gu4_A CAAT/enhancer binding p 47.8 22 0.00077 22.2 3.6 17 37-53 53-69 (78)
104 3nmd_A CGMP dependent protein 47.4 25 0.00084 22.2 3.7 15 36-50 42-56 (72)
105 3coq_A Regulatory protein GAL4 47.1 20 0.00067 20.9 3.1 22 34-55 45-66 (89)
106 1vej_A Riken cDNA 4931431F19; 47.0 12 0.00043 23.2 2.3 45 2-56 8-54 (74)
107 2zxx_A Geminin; coiled-coil, c 46.8 37 0.0013 21.7 4.5 32 35-69 35-66 (79)
108 1t2k_D Cyclic-AMP-dependent tr 46.8 31 0.0011 19.9 3.9 23 31-53 19-41 (61)
109 1am9_A Srebp-1A, protein (ster 46.8 25 0.00085 21.5 3.6 26 30-55 53-78 (82)
110 1gu4_A CAAT/enhancer binding p 46.7 11 0.00037 23.7 2.0 16 38-53 47-62 (78)
111 2xcs_B DNA gyrase subunit B, D 46.1 25 0.00086 29.9 4.7 49 28-76 557-605 (692)
112 2inr_A DNA topoisomerase 4 sub 45.8 23 0.0008 29.0 4.3 50 27-76 373-422 (514)
113 1x8y_A Lamin A/C; structural p 45.6 29 0.00099 21.5 3.9 24 31-54 25-48 (86)
114 3qfl_A MLA10; coiled-coil, (CC 45.4 14 0.00048 23.5 2.4 19 36-54 21-39 (115)
115 1r8d_A Transcription activator 45.3 25 0.00084 21.7 3.5 23 32-54 80-102 (109)
116 3bj4_A Potassium voltage-gated 44.9 27 0.00092 20.6 3.4 29 28-56 11-39 (49)
117 1uii_A Geminin; human, DNA rep 44.2 26 0.0009 22.7 3.6 22 35-56 47-68 (83)
118 1hjb_A Ccaat/enhancer binding 43.9 21 0.00072 22.8 3.1 19 33-51 56-74 (87)
119 2zvf_A Alanyl-tRNA synthetase; 43.7 28 0.00097 22.7 3.8 23 30-52 35-57 (171)
120 2cly_B ATP synthase D chain, m 43.5 24 0.00082 24.4 3.5 28 35-62 103-130 (160)
121 1gmj_A ATPase inhibitor; coile 43.5 28 0.00094 22.6 3.6 25 31-55 37-65 (84)
122 1pyi_A Protein (pyrimidine pat 43.5 22 0.00075 21.1 3.0 21 35-55 49-69 (96)
123 4b4t_J 26S protease regulatory 43.3 23 0.00078 27.7 3.8 27 30-56 42-68 (405)
124 1zvu_A Topoisomerase IV subuni 43.2 27 0.00093 29.8 4.4 50 27-76 324-373 (716)
125 3a7p_A Autophagy protein 16; c 43.0 26 0.00088 24.9 3.7 23 30-52 71-93 (152)
126 3r0s_A Acyl-[acyl-carrier-prot 43.0 23 0.00077 24.8 3.4 33 44-77 225-257 (266)
127 2v4h_A NF-kappa-B essential mo 42.9 25 0.00087 23.8 3.5 25 29-53 85-109 (110)
128 1q08_A Zn(II)-responsive regul 42.7 51 0.0018 19.5 5.3 24 31-54 43-66 (99)
129 1h7c_A Tubulin-specific chaper 42.7 37 0.0012 22.1 4.2 38 29-71 68-105 (108)
130 1z0j_B FYVE-finger-containing 42.3 19 0.00065 22.0 2.5 27 29-55 30-56 (59)
131 3swk_A Vimentin; cytoskeleton, 42.1 18 0.00063 22.6 2.5 20 37-56 66-85 (86)
132 1gk4_A Vimentin; intermediate 42.1 36 0.0012 20.9 3.9 24 30-53 22-45 (84)
133 3mq7_A Bone marrow stromal ant 42.1 32 0.0011 23.8 3.9 26 31-56 75-100 (121)
134 3gpv_A Transcriptional regulat 41.9 30 0.001 22.8 3.7 19 35-53 103-121 (148)
135 1q06_A Transcriptional regulat 41.9 28 0.00096 22.5 3.5 27 30-56 82-108 (135)
136 2qup_A BH1478 protein; structu 41.9 26 0.00087 23.8 3.4 26 25-50 94-119 (145)
137 1l8d_A DNA double-strand break 41.9 34 0.0012 21.1 3.8 22 33-54 70-91 (112)
138 3viq_A SWI5-dependent recombin 41.6 20 0.00069 24.1 2.8 28 31-58 4-31 (122)
139 2dq0_A Seryl-tRNA synthetase; 41.3 45 0.0016 26.1 5.2 46 30-81 72-117 (455)
140 3qne_A Seryl-tRNA synthetase, 41.2 44 0.0015 26.9 5.2 44 32-81 76-119 (485)
141 1jnm_A Proto-oncogene C-JUN; B 41.1 43 0.0015 19.4 3.9 23 33-55 35-57 (62)
142 3azd_A Short alpha-tropomyosin 41.0 16 0.00054 20.0 1.8 24 32-55 9-32 (37)
143 2fxo_A Myosin heavy chain, car 40.6 31 0.0011 22.5 3.6 24 32-55 102-125 (129)
144 2a26_A Calcyclin-binding prote 40.4 25 0.00087 20.4 2.8 17 37-53 30-46 (50)
145 3err_A Fusion protein of micro 40.4 51 0.0018 26.6 5.5 46 30-81 176-221 (536)
146 3lpx_A GYRA, DNA gyrase, A sub 40.3 30 0.001 28.5 4.1 49 28-76 325-373 (500)
147 3u1c_A Tropomyosin alpha-1 cha 40.0 27 0.00093 22.2 3.1 21 34-54 44-64 (101)
148 4fxw_B Splicing factor 1; UHM, 40.0 39 0.0013 23.0 4.1 39 14-53 70-111 (124)
149 2gkw_A TNF receptor-associated 39.4 35 0.0012 23.0 3.8 26 31-56 11-36 (192)
150 2wt7_A Proto-oncogene protein 39.1 47 0.0016 19.3 3.9 16 38-53 41-56 (63)
151 1gmj_A ATPase inhibitor; coile 38.9 41 0.0014 21.7 3.9 22 31-52 48-69 (84)
152 3v1a_A Computational design, M 38.7 22 0.00076 20.8 2.4 25 29-53 22-46 (48)
153 3tnu_B Keratin, type II cytosk 38.6 22 0.00075 23.2 2.6 24 33-56 35-58 (129)
154 2jee_A YIIU; FTSZ, septum, coi 38.1 41 0.0014 21.5 3.7 24 31-54 10-33 (81)
155 1ses_A Seryl-tRNA synthetase; 37.9 67 0.0023 24.8 5.6 46 30-81 67-112 (421)
156 2xkj_E Topoisomerase IV; type 37.7 34 0.0012 29.4 4.2 50 27-76 618-667 (767)
157 3a7o_A Autophagy protein 16; c 37.6 37 0.0013 21.8 3.4 21 31-51 22-42 (75)
158 4b4t_K 26S protease regulatory 37.5 38 0.0013 26.4 4.1 24 30-53 45-68 (428)
159 3q8t_A Beclin-1; autophagy, AT 37.3 33 0.0011 21.8 3.3 24 32-55 9-32 (96)
160 3iv1_A Tumor susceptibility ge 37.2 44 0.0015 21.2 3.8 25 31-55 50-74 (78)
161 3qks_A DNA double-strand break 37.1 36 0.0012 22.7 3.6 26 31-56 172-197 (203)
162 3ilw_A DNA gyrase subunit A; D 37.0 41 0.0014 27.4 4.4 48 28-75 336-383 (470)
163 4emc_A Monopolin complex subun 36.9 33 0.0011 25.1 3.6 21 35-55 35-55 (190)
164 1wle_A Seryl-tRNA synthetase; 36.7 57 0.0019 26.2 5.2 44 32-81 121-164 (501)
165 2wt7_B Transcription factor MA 36.3 86 0.0029 20.2 5.3 39 27-68 42-80 (90)
166 3v86_A De novo design helix; c 36.1 50 0.0017 17.4 3.4 21 33-53 6-26 (27)
167 1fzc_B Fibrin; blood coagulati 35.9 37 0.0013 25.9 3.8 41 29-69 32-84 (328)
168 2doh_C Fragment, plasminogen-b 35.7 37 0.0013 18.4 2.8 21 32-53 6-26 (30)
169 3hnw_A Uncharacterized protein 35.2 35 0.0012 23.0 3.3 12 42-53 118-129 (138)
170 1txp_A HnRNP C, heterogeneous 35.0 54 0.0018 17.5 3.7 25 31-55 3-27 (28)
171 2zvf_A Alanyl-tRNA synthetase; 35.0 40 0.0014 21.9 3.5 36 32-68 30-65 (171)
172 3pp5_A BRK1, protein brick1; t 34.9 42 0.0014 21.2 3.3 22 33-54 51-72 (73)
173 1r8e_A Multidrug-efflux transp 34.6 40 0.0014 23.1 3.5 26 31-56 83-108 (278)
174 2bbw_A Adenylate kinase 4, AK4 34.3 1E+02 0.0035 20.5 6.8 60 23-83 180-245 (246)
175 3e98_A GAF domain of unknown f 33.7 32 0.0011 24.9 3.1 29 22-55 65-93 (252)
176 1uii_A Geminin; human, DNA rep 33.7 71 0.0024 20.6 4.4 24 32-55 51-74 (83)
177 4etp_A Kinesin-like protein KA 33.4 20 0.0007 27.6 2.0 17 37-53 20-36 (403)
178 3gpv_A Transcriptional regulat 33.1 55 0.0019 21.5 3.9 21 36-56 97-117 (148)
179 4etp_A Kinesin-like protein KA 32.9 38 0.0013 26.1 3.5 20 35-54 11-30 (403)
180 2dq3_A Seryl-tRNA synthetase; 32.9 51 0.0017 25.5 4.2 45 31-81 72-116 (425)
181 2xv5_A Lamin-A/C; structural p 32.9 50 0.0017 20.4 3.4 20 34-53 5-24 (74)
182 3u59_A Tropomyosin beta chain; 32.8 14 0.00049 23.3 0.9 16 34-49 86-101 (101)
183 1yf2_A Type I restriction-modi 32.8 40 0.0014 23.5 3.3 34 24-57 376-409 (425)
184 2v71_A Nuclear distribution pr 32.6 6 0.0002 28.7 -1.0 30 29-58 156-185 (189)
185 2j5u_A MREC protein; bacterial 32.2 13 0.00045 27.0 0.7 42 30-71 22-63 (255)
186 4e61_A Protein BIM1; EB1-like 32.1 48 0.0016 22.2 3.5 35 35-69 19-61 (106)
187 3tnu_B Keratin, type II cytosk 31.9 59 0.002 21.0 3.9 25 31-55 47-71 (129)
188 2lq4_p Lysophosphatidic acid r 31.8 13 0.00044 23.9 0.6 18 35-52 14-31 (80)
189 3i00_A HIP-I, huntingtin-inter 31.4 75 0.0026 21.1 4.4 31 34-66 15-45 (120)
190 2xdj_A Uncharacterized protein 31.0 55 0.0019 20.6 3.5 17 39-55 25-41 (83)
191 3hfe_A Potassium voltage-gated 30.7 42 0.0015 18.3 2.5 23 31-53 7-29 (31)
192 3sja_C Golgi to ER traffic pro 30.6 50 0.0017 20.4 3.1 21 34-54 32-52 (65)
193 3rrk_A V-type ATPase 116 kDa s 30.5 53 0.0018 23.8 3.7 33 23-55 215-247 (357)
194 2wt7_B Transcription factor MA 30.5 67 0.0023 20.7 3.9 17 34-50 55-71 (90)
195 2gd5_A Charged multivesicular 30.3 62 0.0021 21.9 3.9 27 29-55 16-42 (179)
196 3he5_A Synzip1; heterodimeric 30.3 42 0.0014 19.8 2.6 33 36-71 5-37 (49)
197 3na7_A HP0958; flagellar bioge 30.2 49 0.0017 23.5 3.5 22 31-52 94-115 (256)
198 3t97_C Nuclear pore glycoprote 30.1 54 0.0018 19.8 3.2 20 35-54 27-46 (64)
199 4ec6_A Putative uncharacterize 30.1 11 0.00037 27.1 0.0 41 34-74 28-72 (161)
200 2p2u_A HOST-nuclease inhibitor 30.0 62 0.0021 22.2 3.9 20 31-50 49-68 (171)
201 2ovj_A Mgcracgap, RAC GTPase-a 30.0 83 0.0028 21.2 4.5 24 59-82 70-93 (201)
202 3hh0_A Transcriptional regulat 29.9 89 0.003 20.5 4.5 17 36-52 89-105 (146)
203 3tnu_A Keratin, type I cytoske 29.8 67 0.0023 20.9 3.9 25 31-55 49-73 (131)
204 2l5g_A GPS2 protein, G protein 29.8 55 0.0019 18.6 2.9 19 35-53 16-34 (38)
205 3a5t_A Transcription factor MA 29.8 13 0.00045 24.8 0.4 25 30-54 54-78 (107)
206 1x4w_A Hypothetical protein FL 29.5 11 0.00038 23.4 -0.0 7 26-32 41-47 (67)
207 4e6u_A Acyl-[acyl-carrier-prot 29.4 27 0.00093 24.2 1.9 29 45-73 230-259 (265)
208 2inr_A DNA topoisomerase 4 sub 29.0 55 0.0019 26.9 4.0 43 34-76 454-501 (514)
209 1gax_A Valrs, valyl-tRNA synth 29.0 41 0.0014 28.5 3.3 30 26-55 792-821 (862)
210 3na7_A HP0958; flagellar bioge 28.8 43 0.0015 23.8 3.0 21 35-55 91-111 (256)
211 3tq7_B Microtubule-associated 28.5 19 0.00066 22.9 1.0 22 34-55 15-36 (82)
212 2qia_A UDP-N-acetylglucosamine 28.3 22 0.00076 24.4 1.3 29 45-73 228-256 (262)
213 3gp4_A Transcriptional regulat 28.1 76 0.0026 20.7 3.9 21 34-54 88-108 (142)
214 3mud_A DNA repair protein XRCC 27.7 43 0.0015 24.1 2.8 17 35-51 136-152 (175)
215 3bs5_A Protein aveugle; sterIl 27.7 84 0.0029 19.9 4.0 31 24-56 73-103 (106)
216 3pmo_A UDP-3-O-[3-hydroxymyris 27.6 60 0.0021 24.2 3.7 36 26-61 332-370 (372)
217 3mov_A Lamin-B1; LMNB1, B-type 27.4 82 0.0028 20.0 3.9 23 31-53 34-56 (95)
218 2xu6_A MDV1 coiled coil; prote 27.3 93 0.0032 19.6 4.0 31 25-55 32-63 (72)
219 4adz_A CSOR; transcription, co 27.2 49 0.0017 23.0 2.9 45 27-71 42-86 (136)
220 2w83_C C-JUN-amino-terminal ki 27.0 88 0.003 20.0 3.9 26 29-54 32-57 (77)
221 3sjb_C Golgi to ER traffic pro 27.0 56 0.0019 21.4 3.0 27 34-60 49-75 (93)
222 3qao_A LMO0526 protein, MERR-l 26.9 75 0.0026 22.7 4.0 25 32-56 88-112 (249)
223 1grj_A GREA protein; transcrip 26.4 53 0.0018 22.1 3.0 23 37-59 56-78 (158)
224 3hnw_A Uncharacterized protein 26.3 61 0.0021 21.8 3.3 19 34-52 82-100 (138)
225 1yf2_A Type I restriction-modi 26.1 62 0.0021 22.6 3.3 36 23-58 165-200 (425)
226 3v26_X ORF3, ORF95, probable s 25.8 72 0.0025 19.8 3.3 28 24-53 68-95 (101)
227 3vlc_E Golgi to ER traffic pro 25.8 52 0.0018 21.6 2.7 24 36-59 58-81 (94)
228 1fzc_C Fibrin; blood coagulati 25.3 70 0.0024 24.5 3.8 39 30-68 21-71 (319)
229 1kd8_A GABH AIV, GCN4 acid bas 25.3 78 0.0027 17.7 3.0 25 33-57 7-31 (36)
230 4abm_A Charged multivesicular 25.2 1E+02 0.0035 18.9 3.9 25 30-54 55-79 (79)
231 2nov_A DNA topoisomerase 4 sub 25.2 71 0.0024 26.1 3.9 43 34-76 430-477 (496)
232 1joc_A EEA1, early endosomal a 25.2 91 0.0031 20.2 3.9 26 29-54 6-31 (125)
233 2p4v_A Transcription elongatio 25.0 49 0.0017 22.3 2.6 22 37-58 56-77 (158)
234 2f23_A Anti-cleavage anti-GREA 24.9 82 0.0028 21.0 3.7 26 34-59 53-78 (156)
235 2w6a_A ARF GTPase-activating p 24.8 56 0.0019 20.3 2.6 17 38-54 38-54 (63)
236 1vp7_A Exodeoxyribonuclease VI 24.8 41 0.0014 22.1 2.1 43 31-73 38-80 (100)
237 1m7k_A Silencer of death domai 24.7 37 0.0013 22.3 1.8 22 35-56 25-46 (99)
238 3h43_A Proteasome-activating n 24.7 45 0.0015 20.7 2.2 17 41-57 2-18 (85)
239 1go4_E MAD1 (mitotic arrest de 24.5 81 0.0028 20.7 3.5 26 31-56 72-97 (100)
240 3p8c_E Probable protein brick1 24.5 68 0.0023 20.3 3.0 24 32-55 50-73 (75)
241 3u5v_A Protein MAX, transcript 24.0 36 0.0012 20.9 1.6 18 40-57 51-68 (76)
242 3rty_A Period circadian protei 23.9 51 0.0017 24.5 2.7 16 57-72 312-327 (339)
243 4dci_A Uncharacterized protein 23.9 86 0.0029 21.8 3.7 24 31-54 33-56 (150)
244 2j5u_A MREC protein; bacterial 23.7 71 0.0024 23.0 3.4 23 33-55 35-57 (255)
245 3gp4_A Transcriptional regulat 23.7 96 0.0033 20.2 3.8 21 36-56 83-103 (142)
246 2rbd_A BH2358 protein; putativ 23.6 1.1E+02 0.0038 20.1 4.1 26 32-58 52-77 (171)
247 2zhg_A Redox-sensitive transcr 23.5 85 0.0029 20.8 3.5 25 33-57 96-120 (154)
248 4b4t_K 26S protease regulatory 23.4 53 0.0018 25.6 2.8 24 32-55 68-91 (428)
249 1t6f_A Geminin; coiled-coil, c 23.4 1.1E+02 0.0037 17.2 3.6 24 31-54 11-34 (37)
250 3lss_A Seryl-tRNA synthetase; 23.4 1.4E+02 0.0049 23.9 5.4 43 33-81 109-152 (484)
251 1ez3_A Syntaxin-1A; three heli 23.3 72 0.0025 19.7 3.0 29 32-60 10-38 (127)
252 1ydx_A Type I restriction enzy 23.0 75 0.0025 22.6 3.3 33 25-57 353-385 (406)
253 2k48_A Nucleoprotein; viral pr 22.9 1.2E+02 0.0041 20.5 4.1 46 26-77 26-72 (107)
254 1lwu_C Fibrinogen gamma chain; 22.9 88 0.003 23.9 3.9 24 31-54 30-53 (323)
255 3f42_A Protein HP0035; helicob 22.9 53 0.0018 21.1 2.3 23 37-59 13-35 (99)
256 3g9r_A Fusion complex of HIV-1 22.8 75 0.0026 18.3 2.7 15 32-46 26-40 (42)
257 3msx_B RHO GTPase-activating p 22.7 1.1E+02 0.0039 20.3 4.1 22 61-82 79-100 (201)
258 3mtu_A Tropomyosin alpha-1 cha 22.6 1.2E+02 0.0041 18.4 3.8 18 37-54 12-29 (75)
259 3ku8_A GYRA14, DNA gyrase subu 22.4 40 0.0014 23.5 1.7 47 30-76 16-62 (156)
260 4i0x_B ESAT-6-like protein MAB 22.2 92 0.0032 18.8 3.3 19 36-54 27-45 (103)
261 3gnl_A Uncharacterized protein 22.1 74 0.0025 22.9 3.2 20 33-52 218-237 (244)
262 3sw1_A Sensory box protein; li 22.0 33 0.0011 19.7 1.1 24 31-54 137-160 (162)
263 3thf_A Protein shroom; coiled- 22.0 1.2E+02 0.0039 22.2 4.2 32 27-58 155-186 (190)
264 1vcs_A Vesicle transport throu 22.0 1.1E+02 0.0037 19.2 3.7 26 29-54 69-94 (102)
265 3mq9_A Bone marrow stromal ant 21.9 80 0.0027 23.5 3.4 19 34-52 450-468 (471)
266 4ati_A MITF, microphthalmia-as 21.9 46 0.0016 21.7 1.9 26 36-61 76-101 (118)
267 3rvy_A ION transport protein; 21.8 19 0.00066 25.1 0.0 21 35-55 257-277 (285)
268 2ic6_A Nucleocapsid protein; h 21.8 52 0.0018 21.0 2.1 38 34-77 5-42 (78)
269 4emc_A Monopolin complex subun 21.7 84 0.0029 23.0 3.4 25 31-55 24-48 (190)
270 1d66_A Protein (GAL4); protein 21.7 49 0.0017 18.0 1.7 12 43-54 54-65 (66)
271 1nog_A Conserved hypothetical 21.6 65 0.0022 22.6 2.7 22 34-55 81-102 (177)
272 3oja_B Anopheles plasmodium-re 21.4 50 0.0017 25.1 2.2 28 28-55 450-477 (597)
273 1slq_A VP4; beta sandwich, gre 21.3 58 0.002 25.2 2.6 18 37-54 245-262 (278)
274 1got_B GT-beta; complex (GTP-b 21.1 59 0.002 22.0 2.3 20 35-54 3-22 (340)
275 3bmb_A Regulator of nucleoside 20.8 74 0.0025 20.7 2.7 38 23-60 7-48 (136)
276 4eqy_A Acyl-[acyl-carrier-prot 20.6 43 0.0015 23.6 1.6 29 45-73 245-277 (283)
277 1rh4_A Right-handed coiled coi 20.4 84 0.0029 17.3 2.5 16 29-44 19-34 (35)
278 1r8e_A Multidrug-efflux transp 20.2 1.1E+02 0.0039 20.7 3.7 20 37-56 82-101 (278)
279 3s4r_A Vimentin; alpha-helix, 20.0 1E+02 0.0035 19.3 3.2 11 40-50 76-86 (93)
No 1
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=96.41 E-value=0.0012 Score=41.98 Aligned_cols=52 Identities=29% Similarity=0.474 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhc--cCCCCCCcc
Q 038668 27 YGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVG--AKPDPLVAM 80 (83)
Q Consensus 27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLLP~ 80 (83)
.---+-++.+.+|.+++.+|+.||. ++. -++|.+|.+++.|++ +.-||||+-
T Consensus 10 ~~~~~~~~~~~~lr~~veqLr~el~-~~R-ikVS~aa~~L~~Yce~~~~~DpLl~g 63 (73)
T 1got_G 10 VINIEDLTEKDKLKMEVDQLKKEVT-LER-MLVSKCCEEFRDYVEERSGEDPLVKG 63 (73)
T ss_dssp ------CTHHHHHHHHHHHHHHHTT-CCC-CCHHHHHHHHHHHHHHHGGGCHHHHC
T ss_pred hhhhcccccHHHHHHHHHHHHHHHC-Cch-hhHHHHHHHHHHHHHhcCCCCCCcCC
Confidence 3334556789999999999999994 454 479999999999999 569999863
No 2
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=91.19 E-value=0.26 Score=31.81 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhcc--CCCCCCc
Q 038668 36 VQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGA--KPDPLVA 79 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves--~pDPLLP 79 (83)
|.+..+.+.-|.-|.. ++.+ ++|.+|+|+..|++. ..||||-
T Consensus 15 i~q~rk~VeQLr~Ea~-i~Ri-kVSqaaadL~~yc~~~~~~DpLl~ 58 (77)
T 3v5w_G 15 IAQARKLVEQLKMEAN-IDRI-KVSKAAADLMAYCEAHAKEDPLLT 58 (77)
T ss_dssp HHHHHHHHHHHHHHHS-SCCC-CHHHHHHHHHHHHHHSGGGCTTTS
T ss_pred HHHHHHHHHHHHHHhc-cchh-hHHHHHHHHHHHHHhcCCCCCCcC
Confidence 4555555555555543 4443 699999999999987 7899984
No 3
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=88.77 E-value=0.46 Score=25.65 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~L 53 (83)
++-|.+++||.|++-||.|...|
T Consensus 5 kldanvkrlekevgklegevarl 27 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEGEVARL 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eccccHHHHHHHHhhhhhhhhhc
Confidence 56788999999999999887544
No 4
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=88.00 E-value=0.61 Score=30.26 Aligned_cols=43 Identities=7% Similarity=0.171 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhcc
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGA 72 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves 72 (83)
.++++.+++|++++..|+..+..|+...+--.-|+|.+..+..
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~ 46 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4678889999999999999999999988888889999998874
No 5
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=87.83 E-value=0.63 Score=25.10 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (83)
+|+..+-.+|.|||.-||=|+.-||
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 5777778899999999999988776
No 6
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=87.13 E-value=0.67 Score=30.25 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHH
Q 038668 32 QMVKVQVLEREIGLLQEELKSVEDVQPASICCKEV 66 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv 66 (83)
++++++.|++|+..|++||+.|.+..-.-.-|-|+
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~ 46 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDI 46 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 67899999999999999999998865443334333
No 7
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=82.67 E-value=0.77 Score=26.57 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 038668 33 MVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
...|+.||++|..|+..|+.|+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999998864
No 8
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=82.36 E-value=0.6 Score=36.93 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCC--CCCC
Q 038668 36 VQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKP--DPLV 78 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~p--DPLL 78 (83)
+..+.+||.+|+-|| ..+.+ ++|.||.+++.+++... ||||
T Consensus 221 ~~~~r~~veqLk~~l-~~~ri-kvS~~~e~l~~y~e~~~~~DPll 263 (424)
T 2pbi_A 221 VTAVRKEIMYYQQAL-MRSTV-KSSVSLGGIVKYSEQFSSNDAIM 263 (424)
T ss_dssp HHHHHHHHHHHHHHH-HSCCC-CHHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHHHHHHHh-cccce-eHHHHHHHHHHHHHhhccCCCcc
Confidence 456788888999888 44444 69999999999998765 8886
No 9
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=81.43 E-value=2 Score=25.04 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
-|+-+||..-+++|.-||.-|++||..
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888889999999988888753
No 10
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=81.02 E-value=1.5 Score=28.68 Aligned_cols=33 Identities=9% Similarity=0.190 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccchh
Q 038668 27 YGKRRQMVKVQVLEREIGLLQEELKSVEDVQPA 59 (83)
Q Consensus 27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~a 59 (83)
.-|.+++++|..|+++|.-....-+.|++|..|
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~v 47 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDV 47 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999898888888776
No 11
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=80.15 E-value=2.9 Score=24.53 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 27 YGKRRQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE 54 (83)
+.+.|.++-+..||.++..|+.|-..|.
T Consensus 15 rSR~RKk~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 15 ESRRKKKEYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888889999999999998877664
No 12
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=79.91 E-value=1.7 Score=33.01 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
|+.++++.+.+||..|++||+.|-.
T Consensus 72 ~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 72 KLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3677899999999999999988743
No 13
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=79.06 E-value=2.5 Score=26.30 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
..+-++..|+.+|.-||.++..|+.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~ 43 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQT 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888877777764
No 14
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=78.87 E-value=1.7 Score=28.51 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 038668 36 VQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~ 55 (83)
|+.|+.+++.|+.+|..|++
T Consensus 33 l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 33 VEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 67788888888888888775
No 15
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=78.72 E-value=0.84 Score=30.12 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccchhhhhhH
Q 038668 33 MVKVQVLEREIGLLQEELKSVEDVQPASICCK 64 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~aS~~Ck 64 (83)
...|..|+++|..|+.+|..|..+..+...|-
T Consensus 21 ~~~~~~L~~~~~~l~~~l~~l~~~~~~~~~Cp 52 (182)
T 1htn_A 21 TKMFEELKSRLDTLSQEVALLKEQQALQTVCL 52 (182)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Confidence 45577789999999999999988766666664
No 16
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=78.71 E-value=1.8 Score=24.67 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 038668 36 VQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~ 55 (83)
|..|+++|..||..|..|+.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67778888888877777654
No 17
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=77.47 E-value=2.8 Score=25.54 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 038668 34 VKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE 54 (83)
.++..|.+++..|+..|..|+
T Consensus 61 ~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 61 QDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444443
No 18
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=77.45 E-value=2.3 Score=26.03 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=16.8
Q ss_pred cccCCCCCCCCCCCCCCCCCcchhHHHHHHHH
Q 038668 5 CRSSLVESPMGPRSPPAAALDLYGKRRQMVKV 36 (83)
Q Consensus 5 ~~sS~~~~~p~pksPp~g~~D~~GkhR~~ael 36 (83)
||+...-+-|.+=| +-|.+||||+..+-
T Consensus 24 CG~~T~~~hParfS----p~Dky~~yR~~~kk 51 (60)
T 2apo_B 24 CGEKTVIPKPPKFS----LEDRWGKYRRMLKR 51 (60)
T ss_dssp SCSBCBCCCCCCCC----TTCTTHHHHHHHHH
T ss_pred CCCcCCCCCCCCCC----CCcchHHHHHHHHH
Confidence 55444434333333 34999999997654
No 19
>3d24_B Peroxisome proliferator-activated receptor gamma coactivator 1-alpha; nuclear receptor, ligand binding domain, DNA- binding, metal-binding, nucleus; 2.11A {Homo sapiens}
Probab=77.33 E-value=1 Score=24.03 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=19.0
Q ss_pred chhhhhhHHHHHHhccCCCCC
Q 038668 57 QPASICCKEVDDFVGAKPDPL 77 (83)
Q Consensus 57 ~~aS~~CkEv~~~Ves~pDPL 77 (83)
++.|+.|.|++...-+.+|++
T Consensus 4 ~~qrRpCtELlKyLTs~~~~~ 24 (26)
T 3d24_B 4 KPQRRPCSELLKYLTTNDDXX 24 (26)
T ss_pred CccCCcHHHHHHHHhcCCccc
Confidence 678999999999999998875
No 20
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=77.21 E-value=0.37 Score=29.02 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Q 038668 32 QMVKVQVLEREIGLLQEELKSVEDVQ 57 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (83)
..++|++|++|+..|+.|++-|.+..
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~~ 89 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAESC 89 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998888877654
No 21
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=76.81 E-value=2.2 Score=25.86 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038668 31 RQMVKVQVLEREIGLLQEEL 50 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL 50 (83)
|.+-+|-+||+||.-|+.--
T Consensus 3 rQ~EEILRLErEIE~Lqrqk 22 (51)
T 2lw9_A 3 KQVEEILRLEKEIEDLQRMK 22 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999998543
No 22
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=76.59 E-value=2.9 Score=23.40 Aligned_cols=23 Identities=17% Similarity=0.445 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 038668 32 QMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (83)
-++.|..|.++...|++++..||
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999998886
No 23
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=74.54 E-value=6.7 Score=26.47 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=16.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 25 DLYGKRRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 25 D~~GkhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
|.--+|.-..+|+.+..++.-|+.+...+-|
T Consensus 21 ~~~~~~p~~~~I~~I~~eV~~L~~qV~~f~g 51 (111)
T 1uk5_A 21 ETPPKHPGVLKVEAILEKVQGLEQAVDSFEG 51 (111)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444555555555555555555555444433
No 24
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=74.45 E-value=3 Score=26.34 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 33 MVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
..+|+.|+++++-||.+|..|.+.
T Consensus 3 ~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 3 EVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456888999999999999888763
No 25
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=74.08 E-value=3.3 Score=27.47 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhhhccchhhhhhHH
Q 038668 37 QVLEREIGLLQEELKSVEDVQPASICCKE 65 (83)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~~~aS~~CkE 65 (83)
+.|+.||.-|+.|+..||+++.-++.-+-
T Consensus 50 ~eL~~EI~~L~~eI~~LE~iqs~aK~LRn 78 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEKMQNNSKLLRN 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 56889999999999999999887776543
No 26
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=73.35 E-value=3.9 Score=23.96 Aligned_cols=25 Identities=8% Similarity=0.223 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
++..++..|.+|+.-|+++++.|+.
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667788899999999999988864
No 27
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=72.50 E-value=3.5 Score=26.37 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc
Q 038668 34 VKVQVLEREIGLLQEELKSVEDVQ 57 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~ 57 (83)
|...+|-.+|++|++||..||.-+
T Consensus 43 atnarL~eq~~lLK~EIRRlERnq 66 (71)
T 3bbp_D 43 ATNAILMEQIKLLKSEIRRLERNQ 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHhhH
Confidence 557789999999999999998754
No 28
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=72.46 E-value=2.7 Score=28.34 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=36.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHh
Q 038668 25 DLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFV 70 (83)
Q Consensus 25 D~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~V 70 (83)
++.-|.+..|.|..|.+|+..|+++|+.+...=|...---.+++.|
T Consensus 6 ~~~~k~~~aa~L~~l~~ql~~l~~~l~~l~~~LP~~~em~~LL~~i 51 (147)
T 2rjz_A 6 QFSTKAFQAANLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDI 51 (147)
T ss_dssp HHHHTGGGCSSHHHHHHHHHHHHHHHHHHHHTTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 4567888999999999999999999999988777665555555544
No 29
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=70.07 E-value=5.7 Score=24.93 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
++..++..|.++...|+.+|++|.+
T Consensus 63 ~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 63 KLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455566677777777777777765
No 30
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=70.06 E-value=5.9 Score=25.72 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE 54 (83)
+-+++++|+.|+.++.-|+.|+.+++
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888888888888888876
No 31
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=69.81 E-value=4.3 Score=26.44 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 32 QMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
+..+|+.|+++++.|+.+|..|++
T Consensus 21 ~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 21 IEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445688999999999999988876
No 32
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=69.59 E-value=5.3 Score=24.79 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 038668 32 QMVKVQVLEREIGLLQEELKS 52 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~ 52 (83)
+++++..|.+|+..|+.+|++
T Consensus 59 l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 59 AVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444443
No 33
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=68.24 E-value=4.3 Score=23.76 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 038668 35 KVQVLEREIGLLQEELKS 52 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~ 52 (83)
.|++|+.+|.-||++|..
T Consensus 13 sV~KLek~ID~LEdeL~~ 30 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478899999999998863
No 34
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=68.24 E-value=2.1 Score=28.52 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---hccchhhhhhHHHHHHhc-cCCCCCCccc
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSV---EDVQPASICCKEVDDFVG-AKPDPLVAMY 81 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L---E~~~~aS~~CkEv~~~Ve-s~pDPLLP~t 81 (83)
..+.+.+++|++++..|...+..| +.--+-..-+.+.+..+. ...+=|.|.+
T Consensus 12 ~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg 67 (151)
T 2zdi_C 12 EKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIG 67 (151)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcC
Confidence 456778888889999999888888 444444444444444443 2223344543
No 35
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=67.34 E-value=5.8 Score=22.42 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKS 52 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~ 52 (83)
-..+..+|+.||+++..|+..|++
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356888999999999999988764
No 36
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=66.89 E-value=7 Score=33.98 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhcc
Q 038668 33 MVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGA 72 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves 72 (83)
.-++++|.+|+..+++||+.|.++.+..--+++|..|++.
T Consensus 733 ~E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~ 772 (803)
T 3qx3_A 733 KEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEE 772 (803)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999998753
No 37
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=66.57 E-value=12 Score=25.95 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhhh--------ccchhhhhhHHHHHHhccCCC
Q 038668 36 VQVLEREIGLLQEELKSVE--------DVQPASICCKEVDDFVGAKPD 75 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE--------~~~~aS~~CkEv~~~Ves~pD 75 (83)
+++|+.=+.|.++.|.+.+ ++..++..|+||.+-|.+=||
T Consensus 102 ~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sLPD 149 (152)
T 4fla_A 102 ARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPD 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 4566666677777765554 456788899999999999988
No 38
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=66.31 E-value=6.8 Score=24.37 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
.+++.+|+.|+.+|..|+..| ++.+.
T Consensus 5 e~l~~~~~~l~~~l~~~~~~~-~~~~~ 30 (148)
T 3pbf_A 5 EELQTELYEIKHQILQTMGVL-SLQGS 30 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 577888999999999999888 55543
No 39
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=65.37 E-value=4.1 Score=24.92 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=10.9
Q ss_pred CCcchhHHHHHHHH
Q 038668 23 ALDLYGKRRQMVKV 36 (83)
Q Consensus 23 ~~D~~GkhR~~ael 36 (83)
+-|.+||||+..+-
T Consensus 37 P~Dky~~yR~~lKk 50 (60)
T 2aus_D 37 PEDPYGEYRRRLKR 50 (60)
T ss_dssp SCCTTHHHHHHHHH
T ss_pred CCCchHHHHHHHHH
Confidence 44999999997654
No 40
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=65.03 E-value=9.3 Score=22.69 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 038668 33 MVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
..+|..|.+.|..|+-||++|-|
T Consensus 55 k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Confidence 45788899999999999988754
No 41
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=64.56 E-value=7.6 Score=22.69 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 038668 32 QMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~L 53 (83)
....+..|+.++..|+.|-..|
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L 41 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSEL 41 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555554444443333
No 42
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=64.35 E-value=7.8 Score=33.42 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhc
Q 038668 33 MVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVG 71 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 71 (83)
.-++++|.+|+..+++||+.|.++.+..--+++|..|.+
T Consensus 706 ~E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~ 744 (757)
T 3l4j_A 706 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEV 744 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999875
No 43
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=64.34 E-value=11 Score=20.72 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 27 YGKRRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
.++--+.+.+-++|+++..++.-|+.|=+
T Consensus 3 ~~~~Sm~~Rl~kVE~qv~~md~KLd~l~~ 31 (33)
T 2ovc_A 3 VDEISMMGRVVKVEKQVQSIEHKLDLLLG 31 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666889999999999999999988754
No 44
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=64.08 E-value=15 Score=24.70 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038668 30 RRQMVKVQVLEREIGLLQ 47 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLe 47 (83)
.++.++|+.|+.++.-|+
T Consensus 10 ~~L~~~i~~l~~~L~~lk 27 (122)
T 3viq_A 10 LKLEKEVRNLQEQLITAE 27 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554443
No 45
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=64.04 E-value=7.5 Score=23.08 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 038668 35 KVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE 54 (83)
+++.|+++..-|+.++..|+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444344444444333
No 46
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=63.73 E-value=9.8 Score=26.58 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-hccchhhhhhHHHHHH
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSV-EDVQPASICCKEVDDF 69 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L-E~~~~aS~~CkEv~~~ 69 (83)
..++|+|..+.+++.-|..+|+.| +|......+..|-..+
T Consensus 62 k~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~ 102 (140)
T 1xaw_A 62 KSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRL 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999985 3444444555555544
No 47
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=62.78 E-value=8.6 Score=25.21 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKS 52 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~ 52 (83)
+...+++.|..+|..||+||+.
T Consensus 93 ~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 93 KEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777764
No 48
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=62.14 E-value=9 Score=24.83 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
+-+...+|.-.++.|..|++||.+|+.
T Consensus 58 ~~~V~~eL~~sn~kl~~L~~eL~eL~a 84 (86)
T 1cxz_B 58 LGPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346678899999999999999999974
No 49
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=62.13 E-value=11 Score=22.14 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L 53 (83)
+|+...++.--+||.-|.+||+.|
T Consensus 26 ~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 26 SKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666677788888887765
No 50
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=62.03 E-value=13 Score=22.15 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 28 GKRRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 28 GkhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
-+.|.++.+..|+.++..|+.|-..|..
T Consensus 24 sR~RK~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 24 SRARKLQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777788888888888888777754
No 51
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=60.82 E-value=7.6 Score=23.13 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
+.|..-||..|++-++-|++|+..++.
T Consensus 23 ~~~r~DEV~~Le~NLrEL~~ei~~~~~ 49 (51)
T 1yzm_A 23 AAGRMDEVRTLQENLRQLQDEYDQQQT 49 (51)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778999999999999999998873
No 52
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=60.43 E-value=9.9 Score=23.71 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (83)
-|-+.||+.|=-||+-|+-||..|-
T Consensus 30 ~rTLLEi~KL~LEIQKL~~EL~gls 54 (65)
T 2yf2_A 30 VKTLLEIRKLFLEIQKLKVELQGLS 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchh
Confidence 3667888888889999988887663
No 53
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=60.07 E-value=9.6 Score=21.03 Aligned_cols=19 Identities=26% Similarity=0.587 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 038668 35 KVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~L 53 (83)
||..|.|||.-|+.|+.-|
T Consensus 3 eiaalkqeiaalkkeiaal 21 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4666777777777766544
No 54
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=59.80 E-value=8.9 Score=25.59 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccchh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVEDVQPA 59 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~a 59 (83)
+..+.+..++++|+-|.++++.||+...+
T Consensus 135 ~~~~~~~~l~~~i~~L~~~l~~le~~~~~ 163 (166)
T 3pjs_K 135 SEKAAEEAYTRTTRALHERFDRLERMLDD 163 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445566888999999999998875544
No 55
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=59.75 E-value=5.8 Score=23.06 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 038668 34 VKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~L 53 (83)
.+++.|+..|..||..|.+|
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55667777777777666554
No 56
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=59.73 E-value=9.9 Score=24.92 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 038668 39 LEREIGLLQEELKSVEDV 56 (83)
Q Consensus 39 LeqEi~fLeeEL~~LE~~ 56 (83)
||.+|..|+|||..|-++
T Consensus 88 LE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 88 LERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555556666665555443
No 57
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=59.67 E-value=9.1 Score=22.53 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (83)
|....+..|+++...|+.+-..|.
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666665555544443
No 58
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=59.60 E-value=5.9 Score=24.79 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 038668 35 KVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~L 53 (83)
+++..|.|+.-|+||++.|
T Consensus 49 evkkveeevkkleeeikkl 67 (67)
T 1lq7_A 49 EVKKVEEEVKKLEEEIKKL 67 (67)
T ss_dssp THHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHhcC
Confidence 4678888888888888764
No 59
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=58.54 E-value=11 Score=24.17 Aligned_cols=8 Identities=50% Similarity=0.991 Sum_probs=0.4
Q ss_pred cCCCCCCc
Q 038668 72 AKPDPLVA 79 (83)
Q Consensus 72 s~pDPLLP 79 (83)
..|++++.
T Consensus 75 ~~p~~~~~ 82 (87)
T 1hjb_A 75 QLPEPLLA 82 (87)
T ss_dssp C-------
T ss_pred HCcHHHhc
Confidence 34555543
No 60
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=58.27 E-value=14 Score=22.38 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 038668 32 QMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (83)
++.+++.|+.|+..|+.|...|+
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555443
No 61
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=57.89 E-value=16 Score=27.34 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHH
Q 038668 35 KVQVLEREIGLLQEELKSVEDVQPASICCKEVDDF 69 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~ 69 (83)
+|..|+.||.-|++|+++|-.+-.....-.+|+.-
T Consensus 123 ~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~ 157 (209)
T 2wvr_A 123 EIEQKDNEIARLKKENKELAEVAEHVQYMAELIER 157 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777776666666666666543
No 62
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=57.79 E-value=13 Score=22.72 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~L 53 (83)
+++.+++.|.+++..|+.+++++
T Consensus 12 ~lq~~~~~l~~q~~~l~~~~~e~ 34 (107)
T 1fxk_A 12 QLQQQAQAISVQKQTVEMQINET 34 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555443
No 63
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=57.70 E-value=7 Score=29.34 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhccch
Q 038668 35 KVQVLEREIGLLQEELKSVEDVQP 58 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~~~ 58 (83)
++..|+.++.-|++|+++||+.-.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e 209 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERS 209 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777766533
No 64
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=57.21 E-value=8.6 Score=24.15 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 28 GKRRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 28 GkhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
-+.|..-||..|++-++-|++|+..++.
T Consensus 40 k~~~r~DEV~tLe~NLrEL~~ei~~~q~ 67 (69)
T 1z0k_B 40 KAAGRMDEVRTLQENLRQLQDEYDQQQT 67 (69)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566778899999999999999988874
No 65
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=57.16 E-value=12 Score=23.90 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccchhh
Q 038668 34 VKVQVLEREIGLLQEELKSVEDVQPAS 60 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS 60 (83)
+..+.++++++-|.++++.||+.....
T Consensus 111 ~~~~~l~~~~~~l~~~l~~le~~~~~~ 137 (139)
T 3eff_K 111 AAEEAYTRTTRALHERFDRLERMLDDN 137 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788888899999999998765543
No 66
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=56.32 E-value=7.6 Score=24.23 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
+.+.+|.+|.++++.|.+.|++++.
T Consensus 39 ~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 39 DARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455566666666666666665553
No 67
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=56.02 E-value=14 Score=22.82 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 038668 32 QMVKVQVLEREIGLLQEELKS 52 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~ 52 (83)
++.+++.|.++|..|+.++++
T Consensus 18 l~~~~~~l~~q~~~l~~~~~e 38 (117)
T 2zqm_A 18 YQQQLQLVVQQKQKVQLELTE 38 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 68
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=55.95 E-value=11 Score=26.94 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccchh
Q 038668 33 MVKVQVLEREIGLLQEELKSVEDVQPA 59 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~~a 59 (83)
+++|++|..=+..|+-||.+||+...-
T Consensus 3 ~~~l~~~q~l~kele~eL~eLek~p~y 29 (154)
T 4fz4_A 3 MAKVEEVQKVVKELEKELGELDKVPSY 29 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 678999999999999999999998763
No 69
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=55.35 E-value=7.3 Score=23.97 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 038668 36 VQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE 54 (83)
|+.|++++..|++|...|.
T Consensus 52 I~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444445554444444
No 70
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=54.70 E-value=18 Score=23.08 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038668 27 YGKRRQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 27 ~GkhR~~ael~~LeqEi~fLeeEL~~L 53 (83)
-|+.++..-|++|++|-..|+.+++.|
T Consensus 39 ~G~~KL~~mi~~l~~E~~~l~~ni~~l 65 (78)
T 3iv1_A 39 KGHQKLEEMVTRLDQEVAEVDKNIELL 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777766666665544
No 71
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.62 E-value=13 Score=21.65 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~L 53 (83)
-+.+|+..|.+++.-|++++++|
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444
No 72
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=54.52 E-value=11 Score=24.76 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccch
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVEDVQP 58 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~ 58 (83)
.++.+.|++++++.-+|+||+..+-...
T Consensus 12 ~mmkqaq~mQ~~m~~~QeeL~~~~v~g~ 39 (112)
T 1j8b_A 12 GLMKQAQQMQEKMQKMQEEIAQLEVTGE 39 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhccEEEEE
Confidence 5678899999999999999998875543
No 73
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=54.30 E-value=12 Score=21.50 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038668 26 LYGKRRQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 26 ~~GkhR~~ael~~LeqEi~fLeeEL~~L 53 (83)
+.|-.|-.-+.+++|+++..++++|+.|
T Consensus 104 ~~~~~~DITe~k~~e~~l~~~~~~l~~l 131 (132)
T 2pr5_A 104 FVGIQNDITKQKEYEKLLEDSLTEITAL 131 (132)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 3344455566778888888888888765
No 74
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=54.20 E-value=14 Score=21.86 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (83)
.|...+++.|++++..|+.+-.+|+
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~ 43 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALK 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544443
No 75
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=53.73 E-value=17 Score=20.02 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
|+-.++..|+-=++.||+-++.||.+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777754
No 76
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=53.20 E-value=17 Score=22.38 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 038668 34 VKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~L 53 (83)
.+|+.|+.++..++++++++
T Consensus 84 ~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 84 VRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 77
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=53.20 E-value=11 Score=22.73 Aligned_cols=19 Identities=16% Similarity=0.358 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 038668 36 VQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE 54 (83)
|+.|++++..|++|+++|.
T Consensus 59 I~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7778888888888887775
No 78
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=52.96 E-value=12 Score=26.02 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccch
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVEDVQP 58 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE~~~~ 58 (83)
---++.+.|++++++.-+|+||+..|-...
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~eveg~ 72 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEKTVEAS 72 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEEEE
Confidence 356788899999999999999999875443
No 79
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=52.95 E-value=16 Score=27.35 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc--------chhhhhhHHHH
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVEDV--------QPASICCKEVD 67 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE~~--------~~aS~~CkEv~ 67 (83)
...+.+++++|+.||.-|+.+.+++.+. +.+..-+++.+
T Consensus 187 ie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~~~~~~L 233 (315)
T 2ve7_A 187 LESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYKDRL 233 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHc
Confidence 4567888999999999998887777663 55555555443
No 80
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=52.77 E-value=20 Score=22.06 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~L 53 (83)
+.|..+.|+.||.++.-|+.+...|
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777665553
No 81
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=52.48 E-value=15 Score=22.43 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 038668 35 KVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~L 53 (83)
+|+.|+.++..++++++++
T Consensus 80 ~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 80 REKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 82
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=52.42 E-value=24 Score=22.85 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q 038668 35 KVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~ 56 (83)
.|..++.||.-|++|+++|--+
T Consensus 46 ~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 46 EIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666677776666544
No 83
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=52.34 E-value=14 Score=22.51 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 038668 33 MVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE 54 (83)
-.+|..|.+-|..||++|+..+
T Consensus 40 E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888877654
No 84
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=52.21 E-value=16 Score=26.03 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 27 YGKRRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
.|+.++.+++..|+++..-|+.+++.|+.
T Consensus 56 ~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 56 IDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888888777777776655
No 85
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.91 E-value=18 Score=21.09 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 038668 34 VKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE 54 (83)
+++..|.+|...|+.+++.|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIV 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666555554
No 86
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=51.80 E-value=19 Score=29.40 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCC
Q 038668 27 YGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDP 76 (83)
Q Consensus 27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (83)
+=.||+..=.+|.+-+++-++++++-|||+-.|-....|++..+.+..|+
T Consensus 349 f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~~ 398 (496)
T 2nov_A 349 YIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENK 398 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCH
Confidence 44688888889999999999999999999988887789999988777664
No 87
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=51.69 E-value=18 Score=32.12 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhc
Q 038668 34 VKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVG 71 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 71 (83)
.+++.|.+|...+++||+.|.++-+..--.+||..|.+
T Consensus 1127 ee~ekL~~E~~e~~~ei~~L~~~s~~~lw~~DLd~~~~ 1164 (1177)
T 4gfh_A 1127 ERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEV 1164 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999887777888877754
No 88
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=51.65 E-value=13 Score=27.04 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L 53 (83)
+.+..+++.|+++|..++.||+++
T Consensus 229 ~~l~~~i~~l~~~l~~~~~~l~~~ 252 (357)
T 3rrk_A 229 ARMKERARLAPEELVGIREEVARL 252 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544
No 89
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=51.60 E-value=16 Score=27.29 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 038668 32 QMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (83)
.+++|+.||.||.-|+.+|+.++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888888888888877654
No 90
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.57 E-value=15 Score=24.27 Aligned_cols=27 Identities=33% Similarity=0.337 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
--.+..+|..|++|..-|.++++.||.
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788888888888888887763
No 91
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=51.34 E-value=15 Score=25.45 Aligned_cols=19 Identities=42% Similarity=0.480 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 038668 33 MVKVQVLEREIGLLQEELK 51 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~ 51 (83)
++.|+.|+-||.-|.++|+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544443
No 92
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=51.32 E-value=12 Score=28.73 Aligned_cols=39 Identities=13% Similarity=0.348 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccc----------h--hhhhhHHHHHH
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVEDVQ----------P--ASICCKEVDDF 69 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~----------~--aS~~CkEv~~~ 69 (83)
-+++.+..|+++|..||..+.++...- | ..+.|+|+...
T Consensus 32 ~Lq~~le~L~~KI~~LE~~v~~q~~~~~~~~~~~~~~p~~~~~dC~~i~~~ 82 (323)
T 1lwu_B 32 SMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRN 82 (323)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTSSBCEECCCEESCCBSSHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCHHHHHhc
Confidence 366777888888888888887665431 1 12469999864
No 93
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=51.05 E-value=11 Score=24.22 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
-.|.+.++..|+..+..|+.+|+.+...
T Consensus 11 l~~~~~~~~~l~~~~~~l~~~l~~~~~~ 38 (182)
T 3kqg_A 11 LKSDLEKASALNTKIRALQGSLENMSKL 38 (182)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777777766654
No 94
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=50.46 E-value=5.9 Score=25.78 Aligned_cols=23 Identities=35% Similarity=0.327 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 038668 30 RRQMVKVQVLEREIGLLQEELKS 52 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~ 52 (83)
=|+|-+|--||.++.-||.||.+
T Consensus 61 iRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 61 IRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 37888888888888888888764
No 95
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=50.28 E-value=15 Score=24.64 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (83)
..++.++.|+-||.-|..+|+...
T Consensus 64 ~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 64 EQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888887765
No 96
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=49.77 E-value=26 Score=23.10 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccch-hhhhhHHHHHHhc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVEDVQP-ASICCKEVDDFVG 71 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~-aS~~CkEv~~~Ve 71 (83)
-+-.||++|++||.-||.=....-.+-. |.--=.|+..|-+
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999888876655555543 5555566666643
No 97
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.75 E-value=29 Score=21.30 Aligned_cols=32 Identities=13% Similarity=0.000 Sum_probs=22.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 23 ALDLYGKRRQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 23 ~~D~~GkhR~~ael~~LeqEi~fLeeEL~~LE 54 (83)
|-.-+=--.+-++|..||.+|.-|+++|..-+
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~ladp~ 49 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQVADAS 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 33333334566788999999999999987543
No 98
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=48.63 E-value=16 Score=22.87 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhh
Q 038668 28 GKRRQMVKVQVLEREIGLLQEELKSVEDVQPASI 61 (83)
Q Consensus 28 GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~ 61 (83)
|.|-...+++.+|.+=.-||+.+..||.-=..|.
T Consensus 1 ~~~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 1 GSHNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888877776544443
No 99
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=48.59 E-value=17 Score=22.34 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 32 QMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
+.++|+.|+.+-.+-|.|++.|.++
T Consensus 23 L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 23 LAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999888887654
No 100
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1
Probab=48.06 E-value=7.2 Score=27.68 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=26.6
Q ss_pred HHHHHHhhhhccchhhhhhHHHHHHhccCCCCCC
Q 038668 45 LLQEELKSVEDVQPASICCKEVDDFVGAKPDPLV 78 (83)
Q Consensus 45 fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLL 78 (83)
.|++-|++|+..-+.+.-.+++++|+.+..-.++
T Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~r~~~ 256 (270)
T 1j2z_A 223 SLRESAKLELEEHANNPFVKEICSFILESSRGVA 256 (270)
T ss_dssp CHHHHHHHHHHHTSSCHHHHHHHHHHHHCSSCBC
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHhccCCcc
Confidence 3788999998887777788999999987544443
No 101
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=47.94 E-value=17 Score=22.52 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
-+...++.|+++|..|+.-++.|+.
T Consensus 78 ~l~~~~~~l~~~i~~l~~~~~~l~~ 102 (108)
T 2vz4_A 78 HLRRQHELLSARIGKLQKMAAAVEQ 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666554
No 102
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=47.90 E-value=22 Score=21.01 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
+++..+|+.|+..-..++.|++.|-+
T Consensus 14 ~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 14 IQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 56778888888888888888777654
No 103
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=47.84 E-value=22 Score=22.22 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q 038668 37 QVLEREIGLLQEELKSV 53 (83)
Q Consensus 37 ~~LeqEi~fLeeEL~~L 53 (83)
..|..+|..|+.|+..|
T Consensus 53 ~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 53 ERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555554444
No 104
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.42 E-value=25 Score=22.19 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 038668 36 VQVLEREIGLLQEEL 50 (83)
Q Consensus 36 l~~LeqEi~fLeeEL 50 (83)
|..|+.+|...++|+
T Consensus 42 I~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 42 IDELELELDQKDELI 56 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 105
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=47.05 E-value=20 Score=20.90 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 038668 34 VKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~ 55 (83)
..+..|++.|..||..|..|-.
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 3578888899999888887754
No 106
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=47.00 E-value=12 Score=23.20 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=24.7
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHH-HHH-Hhhhhcc
Q 038668 2 DNACRSSLVESPMGPRSPPAAALDLYGKRRQMVKVQVLEREIGLL-QEE-LKSVEDV 56 (83)
Q Consensus 2 ~~~~~sS~~~~~p~pksPp~g~~D~~GkhR~~ael~~LeqEi~fL-eeE-L~~LE~~ 56 (83)
.|||..|....++. -.||. .|...+|++|. +++|- ++. ++-|...
T Consensus 8 ~~~~s~s~~~~~~~-~~~pe--------~~ye~qi~qL~-eMGF~dr~~~~~AL~~t 54 (74)
T 1vej_A 8 ARACSQSSQTALPT-SLFTE--------GRYQQELEELK-ALGFANRDANLQALVAT 54 (74)
T ss_dssp CSCCCCCCSSCCCC-GGGTT--------TTSHHHHHHHH-HHTCCCHHHHHHHHHHT
T ss_pred hhhcccccCCCCCC-CCCch--------HHHHHHHHHHH-HcCCCcHHHHHHHHHHh
Confidence 57887777665433 23333 23355677775 68884 222 4555443
No 107
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=46.82 E-value=37 Score=21.68 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHH
Q 038668 35 KVQVLEREIGLLQEELKSVEDVQPASICCKEVDDF 69 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~ 69 (83)
+-.+|..+|..+++|+..|. .-.+.++|+.+-
T Consensus 35 EN~~Lh~~ie~~~eEi~~Lk---eEN~~L~el~~~ 66 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLR---KENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44566666666666665443 333445555543
No 108
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=46.82 E-value=31 Score=19.86 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~L 53 (83)
|....+..|+.++.+|+.|-..|
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L 41 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQL 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555554444
No 109
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=46.76 E-value=25 Score=21.48 Aligned_cols=26 Identities=19% Similarity=0.072 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
+-++.+++.|+.|...|+.++++..-
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~~~~~ 78 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVHKSKS 78 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45788889999999999988887543
No 110
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=46.75 E-value=11 Score=23.68 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhhh
Q 038668 38 VLEREIGLLQEELKSV 53 (83)
Q Consensus 38 ~LeqEi~fLeeEL~~L 53 (83)
.|++|=.-|+.++..|
T Consensus 47 ~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 47 ELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 111
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=46.12 E-value=25 Score=29.91 Aligned_cols=49 Identities=8% Similarity=0.016 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCC
Q 038668 28 GKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDP 76 (83)
Q Consensus 28 GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (83)
=.||+..=..|.+-+++-++++++-|||+-.|-....||+..+.+..||
T Consensus 557 ~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~ 605 (692)
T 2xcs_B 557 LEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTD 605 (692)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhCCCH
Confidence 3688888888899999999999999999888777788999888777665
No 112
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=45.77 E-value=23 Score=29.04 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCC
Q 038668 27 YGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDP 76 (83)
Q Consensus 27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (83)
+=.||+..=..|.+-+++-++++++-|||+-.|-..-.|++..+.+..|+
T Consensus 373 f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~~ 422 (514)
T 2inr_A 373 YLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNK 422 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 34688888888999999999999999999888877778888877766653
No 113
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=45.56 E-value=29 Score=21.51 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (83)
|...+++.++..|..|+.||.++-
T Consensus 25 ~~~~~l~~~q~~i~~lE~el~~~r 48 (86)
T 1x8y_A 25 SLARERDTSRRLLAEKEREMAEMR 48 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888888877653
No 114
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=45.39 E-value=14 Score=23.50 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 038668 36 VQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE 54 (83)
+..++.+|.+|+.||..+.
T Consensus 21 ~~gv~~~i~~Lk~eL~~m~ 39 (115)
T 3qfl_A 21 HKGVKKNIEDLGKELESMN 39 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHHH
Confidence 4556777777777777653
No 115
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=45.25 E-value=25 Score=21.72 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 038668 32 QMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE 54 (83)
+...++.|+++|.-|+.-++.|+
T Consensus 80 l~~~~~~l~~~i~~l~~~~~~l~ 102 (109)
T 1r8d_A 80 LQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555554444443
No 116
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=44.95 E-value=27 Score=20.65 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 28 GKRRQMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 28 GkhR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
|+--+.+.|.++|+++..++.-|+.|=.+
T Consensus 11 ~~~S~~~Rl~rVE~qV~~md~KLd~l~~~ 39 (49)
T 3bj4_A 11 GSNTIGARLNRVEDKVTQLDQRLALITDM 39 (49)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557888999999999999999887544
No 117
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=44.17 E-value=26 Score=22.67 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q 038668 35 KVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~ 56 (83)
|-..|..+|..|++|+..|...
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~e 68 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKE 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666555443
No 118
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=43.88 E-value=21 Score=22.82 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 038668 33 MVKVQVLEREIGLLQEELK 51 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~ 51 (83)
.++|..|++|+.+|.+-|.
T Consensus 56 r~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 56 QKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 119
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=43.65 E-value=28 Score=22.72 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 038668 30 RRQMVKVQVLEREIGLLQEELKS 52 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~ 52 (83)
.+++.+++.|++||..|+.++-.
T Consensus 35 ~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 35 ERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777766544
No 120
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=43.54 E-value=24 Score=24.41 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchhhhh
Q 038668 35 KVQVLEREIGLLQEELKSVEDVQPASIC 62 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~~~aS~~ 62 (83)
-++..+.+|..||.||+.++.+-|.+.-
T Consensus 103 ~~~~s~~ri~~lekeL~~i~~~~P~~~m 130 (160)
T 2cly_B 103 FLTQSKTRIQEYEKELEKMRNIIPFDQM 130 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHhC
Confidence 3666778999999999999999887764
No 121
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=43.52 E-value=28 Score=22.57 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=16.3
Q ss_pred HHHHHHHHHH----HHHHHHHHHHhhhhc
Q 038668 31 RQMVKVQVLE----REIGLLQEELKSVED 55 (83)
Q Consensus 31 R~~ael~~Le----qEi~fLeeEL~~LE~ 55 (83)
+...+|+.|- .||.+-++||+.||.
T Consensus 37 kekEqL~~LKkkl~~el~~h~~ei~~le~ 65 (84)
T 1gmj_A 37 RAKEQLAALKKHKENEISHHAKEIERLQK 65 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444 678888888887765
No 122
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=43.50 E-value=22 Score=21.14 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 038668 35 KVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~ 55 (83)
.+..|+..|..||..|.++..
T Consensus 49 ~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 49 YVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 578899999999999888754
No 123
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.28 E-value=23 Score=27.75 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
+|+.++.+.|++++..+++|++.|...
T Consensus 42 ~~l~~~~~~l~~~~~~~~~e~~~l~~~ 68 (405)
T 4b4t_J 42 RRLEAQRNALNDKVRFIKDELRLLQEP 68 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455666667777777888888776654
No 124
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=43.16 E-value=27 Score=29.84 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCC
Q 038668 27 YGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDP 76 (83)
Q Consensus 27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (83)
+=.||+..=..|.+-+++-++++++-|||+-.|-..-.||+..+-+..||
T Consensus 324 f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iDeVI~iIR~s~~~ 373 (716)
T 1zvu_A 324 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP 373 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhcCch
Confidence 44688888899999999999999999999988888889999988877765
No 125
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=43.03 E-value=26 Score=24.87 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 038668 30 RRQMVKVQVLEREIGLLQEELKS 52 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~ 52 (83)
.++..++..|+++|.-|++||+.
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~e 93 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIAL 93 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666654
No 126
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0
Probab=43.02 E-value=23 Score=24.79 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=22.3
Q ss_pred HHHHHHHhhhhccchhhhhhHHHHHHhccCCCCC
Q 038668 44 GLLQEELKSVEDVQPASICCKEVDDFVGAKPDPL 77 (83)
Q Consensus 44 ~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPL 77 (83)
..|+|.|++|+..- .+..-+++++|+.+..-.+
T Consensus 225 ~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~r~~ 257 (266)
T 3r0s_A 225 GDLKENAKNLLENQ-ESENVKKMCHFILETKRGI 257 (266)
T ss_dssp SCHHHHHHHHHTTC-CCHHHHHHHHHHHHCSSCC
T ss_pred CcHHHHHHHHHhhc-CCHHHHHHHHHHHhccCCc
Confidence 44788888887654 4445688999987544333
No 127
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=42.86 E-value=25 Score=23.80 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~L 53 (83)
|-|++-+...|..++..|+-++..|
T Consensus 85 REkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 4567777778888888887777665
No 128
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=42.74 E-value=51 Score=19.48 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (83)
-+..+++.|+++|..|+.-++.|+
T Consensus 43 ~L~~~~~~l~~~i~~L~~~~~~L~ 66 (99)
T 1q08_A 43 IVQERLQEVEARIAELQSMQRSLQ 66 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666665555544443
No 129
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=42.66 E-value=37 Score=22.14 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhc
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVG 71 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 71 (83)
+.|+..++..|++ ||++| +.+++...... -+++++.+.
T Consensus 68 ~~Rl~~a~~~L~~---~l~~e-~~~~~~ee~~~-Ake~l~~a~ 105 (108)
T 1h7c_A 68 QRRLEAAYLDLQR---ILENE-KDLEEAEEYKE-ARLVLDSVK 105 (108)
T ss_dssp HHHHHHHHHHHHH---HHHHC-GGGTTSHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHhc-ccCCCcHHHHH-HHHHHHHHH
Confidence 5688888888877 44444 44555554443 366665543
No 130
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=42.26 E-value=19 Score=22.01 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
+.|..-||..|++-++-|++|+..+++
T Consensus 30 ~~~R~DEV~~Le~NLrEL~~ei~~~~~ 56 (59)
T 1z0j_B 30 QCGRLDEVEVLTENLRELKHTLAKQKG 56 (59)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667899999999999999998876
No 131
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=42.10 E-value=18 Score=22.62 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 038668 37 QVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~ 56 (83)
.-||.+|..|+|||..|-+.
T Consensus 66 ~dLE~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 66 LDLERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 35778888888888877544
No 132
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=42.09 E-value=36 Score=20.88 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L 53 (83)
+|...+++.++..|..|+.||.++
T Consensus 22 ~~~~~~~~~~q~~i~~lE~eL~~~ 45 (84)
T 1gk4_A 22 ENFAVEAANYQDTIGRLQDEIQNM 45 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666655
No 133
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=42.06 E-value=32 Score=23.79 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
-++.||+.|++++.-..+|++.|-.-
T Consensus 75 eLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678888888888888888877543
No 134
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=41.95 E-value=30 Score=22.78 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 038668 35 KVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~L 53 (83)
.++.|+++|..|+.-++.|
T Consensus 103 ~~~~l~~~i~~L~~~~~~L 121 (148)
T 3gpv_A 103 QEANVLQLIQDTEKNLKKI 121 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 135
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=41.93 E-value=28 Score=22.52 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
.-+...++.|+++|..|+.-++.|+.+
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (135)
T 1q06_A 82 RRTLEKVAEIERHIEELQSMRDQLLAL 108 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777766554
No 136
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=41.90 E-value=26 Score=23.75 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=23.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Q 038668 25 DLYGKRRQMVKVQVLEREIGLLQEEL 50 (83)
Q Consensus 25 D~~GkhR~~ael~~LeqEi~fLeeEL 50 (83)
|.+|+||...=|+..++++.-|-++|
T Consensus 94 ~r~gr~r~y~iV~~ID~kL~eLt~~l 119 (145)
T 2qup_A 94 NRRGRTKIYKIVKEVDRKLLDLTDAV 119 (145)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeeEEeehhHHhHHHHHHHHHH
Confidence 56899999999999999999999887
No 137
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.86 E-value=34 Score=21.10 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 038668 33 MVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE 54 (83)
.++++.++.+|..|++++..++
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~ 91 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELE 91 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554
No 138
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=41.58 E-value=20 Score=24.06 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccch
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVEDVQP 58 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~ 58 (83)
.++.+.-.|+++|+-|+++|+.|+-.-.
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa~k 31 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETARK 31 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777899999999999987765533
No 139
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=41.35 E-value=45 Score=26.14 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCCCCccc
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMY 81 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t 81 (83)
..+.++++.|..+|.-|+++++++|. --.+++..+-..++|-.|+.
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ipN~~~~~vP~g 117 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKK------KIDYYLWRLPNITHPSVPVG 117 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHTTSCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCccCCCC
Confidence 35667777777777777777777763 34667777777888887764
No 140
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=41.16 E-value=44 Score=26.93 Aligned_cols=44 Identities=14% Similarity=0.017 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCCCCccc
Q 038668 32 QMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMY 81 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t 81 (83)
+.++++.|..+|.-|+++++++| .--.+++..|-..++|=.|+.
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~------~~~~~~l~~iPN~~~~~vP~g 119 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEAD------KNLRSKINQVGNIVHESVVDS 119 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTSCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCCCCCccCCCC
Confidence 45556666666666666666555 335677777778888888764
No 141
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=41.08 E-value=43 Score=19.36 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 038668 33 MVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
..+-..|..+|..|++|+..|..
T Consensus 35 ~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 35 KAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666543
No 142
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=40.98 E-value=16 Score=19.98 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 32 QMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
+.-+|+.|+++..-+|+++..++.
T Consensus 9 vKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 9 VRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777766653
No 143
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=40.62 E-value=31 Score=22.55 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 32 QMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
++++-+.|++++.-|++.|+.+|.
T Consensus 102 L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 102 LTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666665554
No 144
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=40.37 E-value=25 Score=20.41 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 038668 37 QVLEREIGLLQEELKSV 53 (83)
Q Consensus 37 ~~LeqEi~fLeeEL~~L 53 (83)
..|.+||+.||.|+..+
T Consensus 30 ~~L~~ei~~lE~ei~~~ 46 (50)
T 2a26_A 30 DALTAEKSKIETEIKNK 46 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45677777777777654
No 145
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=40.36 E-value=51 Score=26.56 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCCCCccc
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMY 81 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t 81 (83)
+.+.++++.|..+|.-||++|++++ ..-.+++..+-..++|-.|+.
T Consensus 176 ~~l~~eV~pLk~eLk~lE~eL~e~e------~eL~~lll~ipN~~~~~vp~g 221 (536)
T 3err_A 176 ADMLKRVEPLRNELQKLEDDAKDNQ------QKLEALLLQVPLPPWPGAPVG 221 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTCCCCCCTTSCCS
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH------HHHHHHhcCCCCCCCCCCCCC
Confidence 4566777777777777777776654 346778888888888888864
No 146
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=40.34 E-value=30 Score=28.54 Aligned_cols=49 Identities=10% Similarity=0.037 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCC
Q 038668 28 GKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDP 76 (83)
Q Consensus 28 GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (83)
=.||+..=..|.+-+++-.++.++-|||+-.|-...-||+..+-+..||
T Consensus 325 ~~~R~evv~rR~~~~L~ka~~R~hileGl~~a~~~iDevI~iIR~s~~~ 373 (500)
T 3lpx_A 325 VLHRREVVTRRTIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNNR 373 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCH
Confidence 3688888889999999999999999999999999999999999888876
No 147
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=40.00 E-value=27 Score=22.21 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 038668 34 VKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE 54 (83)
.+|.-|++-|+.|++||+.++
T Consensus 44 ~Ei~sL~kk~~~lE~eld~~e 64 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSRDQVL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666543
No 148
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=39.98 E-value=39 Score=22.97 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCcchhHH---HHHHHHHHHHHHHHHHHHHHhhh
Q 038668 14 MGPRSPPAAALDLYGKR---RQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 14 p~pksPp~g~~D~~Gkh---R~~ael~~LeqEi~fLeeEL~~L 53 (83)
-+..|||+ .-|-.|++ |.+-.-+.||.|=..|=+++-.+
T Consensus 70 ~RSPSPpP-~Yd~~G~R~NTRE~R~r~~LE~ER~~lIe~~~k~ 111 (124)
T 4fxw_B 70 DRSPSPEP-IYNSEGKRLNTREFRTRKKLEEERHNLITEMVAL 111 (124)
T ss_dssp SSCCCCCC-CBCTTSCBSSCHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred cCCCCCCC-ccCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777 44788876 66666788888877776665443
No 149
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=39.45 E-value=35 Score=22.99 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
++-..|.+++++|..|+++++++|..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (192)
T 2gkw_A 11 RHDQMLSVHDIRLADMDLRFQVLETA 36 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33455667778888888888888874
No 150
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=39.10 E-value=47 Score=19.33 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhhh
Q 038668 38 VLEREIGLLQEELKSV 53 (83)
Q Consensus 38 ~LeqEi~fLeeEL~~L 53 (83)
.|..+|..|++|+..|
T Consensus 41 ~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 41 ALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 151
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=38.87 E-value=41 Score=21.73 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKS 52 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~ 52 (83)
++..+|..-..||.-||++|+.
T Consensus 48 kl~~el~~h~~ei~~le~~i~r 69 (84)
T 1gmj_A 48 HKENEISHHAKEIERLQKEIER 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666654
No 152
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=38.67 E-value=22 Score=20.84 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~L 53 (83)
+.|..-||..|++-++-|+.|++.+
T Consensus 22 ~~rRfdEV~~L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 22 AAGRMDEVRTLQENLHQLMHEYFQQ 46 (48)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhcChHHHHHHHHHHHHHHHHHHhh
Confidence 4566778899999999999888754
No 153
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.56 E-value=22 Score=23.19 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 33 MVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
..+|..|.+.|..|+-||+++.++
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~ 58 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 356777777777777777777654
No 154
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.08 E-value=41 Score=21.52 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (83)
.+-++|+.+=..|..|+.|+++|.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELK 33 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELK 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667777777776664
No 155
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=37.87 E-value=67 Score=24.80 Aligned_cols=46 Identities=20% Similarity=0.111 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCCCCccc
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMY 81 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t 81 (83)
..+.++++.|..+|.-|+++++++|. --.+++..+-..++|=.|+.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ipN~~~~~vp~g 112 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEA------RLEALLLQVPLPPWPGAPVG 112 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHTTCCCCCCTTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCCCCCCC
Confidence 34566777777777777777776652 34666677777777777753
No 156
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=37.66 E-value=34 Score=29.41 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCC
Q 038668 27 YGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDP 76 (83)
Q Consensus 27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (83)
+=.||+..=..|.+-+++-++++++-|||+-.|-..-.||+..|.+..||
T Consensus 618 f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iD~vI~iIr~s~~~ 667 (767)
T 2xkj_E 618 WIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP 667 (767)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhccch
Confidence 34688888899999999999999999999888877788999988777765
No 157
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=37.60 E-value=37 Score=21.77 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 038668 31 RQMVKVQVLEREIGLLQEELK 51 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~ 51 (83)
+++.+|.-=++||+.|+|.++
T Consensus 22 ~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 22 ILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566667778888877664
No 158
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.49 E-value=38 Score=26.40 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~L 53 (83)
.++..++++|++|+.+|+-|-+.|
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l 68 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYI 68 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666555554443
No 159
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=37.32 E-value=33 Score=21.79 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 32 QMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
+.++|+.|..|=.-|..||+.||+
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEk 32 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEK 32 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 160
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=37.20 E-value=44 Score=21.23 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
|+..+-+.|+..|..|++..++|+.
T Consensus 50 ~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 50 RLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666655555553
No 161
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=37.12 E-value=36 Score=22.75 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
++...++.+++++.-|++.+..++|-
T Consensus 172 ~l~~~~~~~~~~~~~l~~~~~~~~~~ 197 (203)
T 3qks_A 172 KLSELKKTINNRIKEYRDILARTEGG 197 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 34455666666666666666666553
No 162
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=37.02 E-value=41 Score=27.37 Aligned_cols=48 Identities=15% Similarity=0.030 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCC
Q 038668 28 GKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPD 75 (83)
Q Consensus 28 GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pD 75 (83)
=.||+..=.+|.+-+++-+++.++-|||+-.|-..-.||+..+.+..|
T Consensus 336 ~~~R~~~~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~ 383 (470)
T 3ilw_A 336 VDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASET 383 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 368888888999999999999999999999988778888887766544
No 163
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=36.94 E-value=33 Score=25.12 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 038668 35 KVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~ 55 (83)
++...++||.-|+++|.+++.
T Consensus 35 ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 35 KLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444455556666666655543
No 164
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=36.72 E-value=57 Score=26.17 Aligned_cols=44 Identities=11% Similarity=0.010 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCCCCccc
Q 038668 32 QMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMY 81 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t 81 (83)
+.++++.|..+|.-|+++++++| .--.+++..+-..++|=.|+.
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~------~~l~~~l~~iPN~~~~~vP~g 164 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLE------EQFYLRALRLPNQTHPDVPVG 164 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTSCCCCCTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCCCCCCCCCCC
Confidence 44555555555555555555544 234566677777777777753
No 165
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=36.33 E-value=86 Score=20.21 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHH
Q 038668 27 YGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDD 68 (83)
Q Consensus 27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~ 68 (83)
|-+.|+ .++..||.|...|+-|++.|- ..-+.+.+|+..
T Consensus 42 CR~Kr~-~q~~~LE~e~~~L~~e~~~L~--~e~~~~~~e~d~ 80 (90)
T 2wt7_B 42 CRYKRV-QQKHHLENEKTQLIQQVEQLK--QEVSRLARERDA 80 (90)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 334443 455667777777766666664 233444455443
No 166
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=36.07 E-value=50 Score=17.39 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 038668 33 MVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~L 53 (83)
.-|+-.|.-|++-|++|.+.|
T Consensus 6 kdevgelkgevralkdevkdl 26 (27)
T 3v86_A 6 KDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHhcc
Confidence 346667777777777777665
No 167
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=35.94 E-value=37 Score=25.90 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccc----------h--hhhhhHHHHHH
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVEDVQ----------P--ASICCKEVDDF 69 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE~~~----------~--aS~~CkEv~~~ 69 (83)
-+-+++.+..|+.+|..|+..+.++...- + ..+.|+|+...
T Consensus 32 I~~Lq~~le~l~~KIq~Le~~v~~~~~~~~~~~~~~~~~p~~~~~dC~~i~~~ 84 (328)
T 1fzc_B 32 LRVLRSILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIPVVSGKECEEIIRK 84 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSBCEECCCEESCCBSSHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcCCCCCCCCHHHHHhc
Confidence 45578888889999999999887765431 1 12469999864
No 168
>2doh_C Fragment, plasminogen-binding group A streptococcal M-like PAM; lysine-binding site, kringle domains, hydrolase; HET: DIO; 2.30A {Homo sapiens} PDB: 2kj4_B 1i5k_C 2doi_C
Probab=35.70 E-value=37 Score=18.41 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 038668 32 QMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~L 53 (83)
--|+|++|.+| +..++||+.|
T Consensus 6 d~~eL~rLknE-Rh~~~elerl 26 (30)
T 2doh_C 6 ADAELQRLKNE-RHEEAELERL 26 (30)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHHH-HHHHHHHHHH
Confidence 35789999887 4556665543
No 169
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.24 E-value=35 Score=23.03 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=4.3
Q ss_pred HHHHHHHHHhhh
Q 038668 42 EIGLLQEELKSV 53 (83)
Q Consensus 42 Ei~fLeeEL~~L 53 (83)
++..|++++..|
T Consensus 118 ~~~~l~~~~~~l 129 (138)
T 3hnw_A 118 EINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 170
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=35.04 E-value=54 Score=17.51 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
-|.-||.++.+.|.+|-|-|+..|+
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~~~~ 27 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEKIEK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3567888999999999777776653
No 171
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=34.97 E-value=40 Score=21.95 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHH
Q 038668 32 QMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDD 68 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~ 68 (83)
+...|++|..|++-|+.|+++|..-- ++..-++++.
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~~-a~~~~~~l~~ 65 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSVI-ADLWADILME 65 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 55678889999999999988887542 3333344444
No 172
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=34.91 E-value=42 Score=21.16 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 038668 33 MVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE 54 (83)
--+|+.||+-+.+||-.|.++.
T Consensus 51 n~kL~~lE~~L~iLEAklsSI~ 72 (73)
T 3pp5_A 51 NEKLTILDRQVDYLEATFKTVQ 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 3467888888888888877653
No 173
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=34.58 E-value=40 Score=23.10 Aligned_cols=26 Identities=8% Similarity=0.082 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
-+..+++.|+++|..|+.-++.|+..
T Consensus 83 ~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (278)
T 1r8e_A 83 FYTEQERQIREKLDFLSALEQTISLV 108 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666543
No 174
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=34.26 E-value=1e+02 Score=20.50 Aligned_cols=60 Identities=8% Similarity=0.021 Sum_probs=41.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHH------hhhhccchhhhhhHHHHHHhccCCCCCCcccCC
Q 038668 23 ALDLYGKRRQMVKVQVLEREIGLLQEEL------KSVEDVQPASICCKEVDDFVGAKPDPLVAMYDY 83 (83)
Q Consensus 23 ~~D~~GkhR~~ael~~LeqEi~fLeeEL------~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~~ 83 (83)
.-|...+..+...|+.+.++..-+.+.. ..+++..+ ..++++|...|...-++.-|-+-|
T Consensus 180 ~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~~~~~~~~~~ 245 (246)
T 2bbw_A 180 QQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKITPIQSKEAY 245 (246)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTSCCCCCGGGC
T ss_pred cCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhCCCCCccccc
Confidence 4466777788888888877766544443 34677777 778899999888766666655544
No 175
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=33.73 E-value=32 Score=24.87 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=17.8
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 22 AALDLYGKRRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 22 g~~D~~GkhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
|..++.++. +.+|.++|+-||++|.+|-.
T Consensus 65 ~aVSL~erQ-----~~~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 65 DAVSLVERQ-----VRLLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp --CHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 455665554 66677777777777766643
No 176
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=33.70 E-value=71 Score=20.61 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 32 QMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
+...|..|+.||..|++|++.|-.
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888777743
No 177
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.41 E-value=20 Score=27.63 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 038668 37 QVLEREIGLLQEELKSV 53 (83)
Q Consensus 37 ~~LeqEi~fLeeEL~~L 53 (83)
..|+++|..+++|++++
T Consensus 20 ~~l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 20 AALKEKIKDTELGMKEL 36 (403)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444433333
No 178
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.06 E-value=55 Score=21.46 Aligned_cols=21 Identities=5% Similarity=0.207 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcc
Q 038668 36 VQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~~ 56 (83)
++.|++.+..|+++++.|+.+
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~ 117 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKN 117 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666555543
No 179
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.91 E-value=38 Score=26.13 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 038668 35 KVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE 54 (83)
+|..|++++..|++++++++
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~ 30 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTE 30 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 180
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.91 E-value=51 Score=25.45 Aligned_cols=45 Identities=31% Similarity=0.376 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCCCCccc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMY 81 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t 81 (83)
.+.++++.|..+|.-|+++++++|. --.+++..+-..++|=.|+.
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ipN~~~~~vp~g 116 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEELRKVEE------ELKNTLLWIPNLPHPSVPVG 116 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTSCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCCCCCCC
Confidence 3456777777777777777777663 34666777777778877763
No 181
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=32.86 E-value=50 Score=20.36 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 038668 34 VKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~L 53 (83)
.|.+.++..|..||.||.++
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~ 24 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEM 24 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 182
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=32.78 E-value=14 Score=23.32 Aligned_cols=16 Identities=44% Similarity=0.650 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 038668 34 VKVQVLEREIGLLQEE 49 (83)
Q Consensus 34 ael~~LeqEi~fLeeE 49 (83)
+++..|+|-|+.||||
T Consensus 86 ~evasLnRriqllEEe 101 (101)
T 3u59_A 86 AEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccC
Confidence 3678888888888764
No 183
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=32.77 E-value=40 Score=23.51 Aligned_cols=34 Identities=9% Similarity=0.200 Sum_probs=27.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 038668 24 LDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQ 57 (83)
Q Consensus 24 ~D~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (83)
|.+-=-+|+...|..|+..|..++.+++.|+.+.
T Consensus 376 Ppl~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k 409 (425)
T 1yf2_A 376 PPLEEQKQIAKILSSVDKSIELKKQKKEKLQRMK 409 (425)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567888889999999999999998887553
No 184
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=32.61 E-value=6 Score=28.72 Aligned_cols=30 Identities=37% Similarity=0.338 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccch
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVEDVQP 58 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE~~~~ 58 (83)
|-.+..++|||-.|++-|..||.-++...-
T Consensus 156 Ke~l~~~~QRLkdE~rDLk~El~v~~~~~~ 185 (189)
T 2v71_A 156 KESLLVSVQRLKDEARDLRQELAVRERQQE 185 (189)
T ss_dssp HHHHHCCC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 445556666666666666666666554433
No 185
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=32.24 E-value=13 Score=26.95 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhc
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVG 71 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 71 (83)
.++..|.++|.+|+..|+.++.+++-+..--.--++++.+-.
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~~ 63 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITD 63 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 344455556666666666555555554443344455555443
No 186
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=32.12 E-value=48 Score=22.16 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh--------ccchhhhhhHHHHHH
Q 038668 35 KVQVLEREIGLLQEELKSVE--------DVQPASICCKEVDDF 69 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE--------~~~~aS~~CkEv~~~ 69 (83)
++..|.++|.-|+..++.|| ++..+-.-|++..+.
T Consensus 19 ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~ 61 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555 344556678887765
No 187
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.91 E-value=59 Score=21.05 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
++.++|+-|......||.-|.++|.
T Consensus 47 ~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 47 RLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444555544444455555544443
No 188
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=31.75 E-value=13 Score=23.87 Aligned_cols=18 Identities=39% Similarity=0.713 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 038668 35 KVQVLEREIGLLQEELKS 52 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~ 52 (83)
+++.||.|+..||.||+-
T Consensus 14 elqalekelaqlekelqa 31 (80)
T 2lq4_p 14 ELQALEKELAQLEKELQA 31 (80)
T ss_dssp TTHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777777777777764
No 189
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.45 E-value=75 Score=21.15 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccchhhhhhHHH
Q 038668 34 VKVQVLEREIGLLQEELKSVEDVQPASICCKEV 66 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv 66 (83)
..|.+|-+||.-|..||+.+ ...+.+.+-.+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l--~~E~q~~v~ql 45 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENM--KTESQRVVLQL 45 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 45777888888888887777 44455544443
No 190
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=31.03 E-value=55 Score=20.56 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhhhhc
Q 038668 39 LEREIGLLQEELKSVED 55 (83)
Q Consensus 39 LeqEi~fLeeEL~~LE~ 55 (83)
|.++|..|+.|+..|-|
T Consensus 25 Lq~Ql~~Lq~Ev~~LRG 41 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRG 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444444444
No 191
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=30.71 E-value=42 Score=18.30 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~L 53 (83)
-+=|.|.+.|++|..+-.-|+.+
T Consensus 7 TIGaRLnRvE~k~t~MD~kL~~i 29 (31)
T 3hfe_A 7 TIGARLNRVEDKVTQLDQRLALI 29 (31)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577999999999998888765
No 192
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=30.60 E-value=50 Score=20.38 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 038668 34 VKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE 54 (83)
|+-.+|+|.+.-|-+||+.+-
T Consensus 32 AKWaKL~Rk~DKl~~ele~l~ 52 (65)
T 3sja_C 32 AKWTKNNRKLDSLDKEINNLK 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777664
No 193
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=30.53 E-value=53 Score=23.77 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=26.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 23 ALDLYGKRRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 23 ~~D~~GkhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
.|+..|.+.....++.|+++|.-|+.+|++++.
T Consensus 215 ~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~ 247 (357)
T 3rrk_A 215 FPGAYGAMPLGKAAARMKERARLAPEELVGIRE 247 (357)
T ss_dssp CCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566556677789999999999999999864
No 194
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.51 E-value=67 Score=20.72 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038668 34 VKVQVLEREIGLLQEEL 50 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL 50 (83)
.++..|.+|+..|.+|+
T Consensus 55 ~e~~~L~~e~~~L~~e~ 71 (90)
T 2wt7_B 55 NEKTQLIQQVEQLKQEV 71 (90)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 195
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=30.34 E-value=62 Score=21.92 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
++.+..++..|+|+|.-|+.|-+.++.
T Consensus 16 ~~~L~~~~r~Ldr~~~kle~~ekk~~~ 42 (179)
T 2gd5_A 16 SLKIRKEMRVVDRQIRDIQREEEKVKR 42 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677888888888877776643
No 196
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.28 E-value=42 Score=19.77 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhc
Q 038668 36 VQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVG 71 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 71 (83)
+.+||+|+..||.|-+.|.+- .--=|+++.+++
T Consensus 5 vaqlenevaslenenetlkkk---nlhkkdliayle 37 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKK---NLHKKDLIAYLE 37 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHh---cccHHHHHHHHH
Confidence 678899999999886655432 222355555544
No 197
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.19 E-value=49 Score=23.50 Aligned_cols=22 Identities=5% Similarity=0.133 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKS 52 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~ 52 (83)
-++.+|..++++|.+|++++.+
T Consensus 94 aL~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777666544
No 198
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=30.13 E-value=54 Score=19.84 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 038668 35 KVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE 54 (83)
+=++|+|++.|++.-=++||
T Consensus 27 ~Q~~ldq~Ld~Ie~QQ~ELe 46 (64)
T 3t97_C 27 DQKRLDQELDFILSQQKELE 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666654444443
No 199
>4ec6_A Putative uncharacterized protein; GRAM-positive, conjugation, NTF2-like, unknown function; 2.50A {Enterococcus faecalis}
Probab=30.11 E-value=11 Score=27.10 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccchhhh----hhHHHHHHhccCC
Q 038668 34 VKVQVLEREIGLLQEELKSVEDVQPASI----CCKEVDDFVGAKP 74 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~----~CkEv~~~Ves~p 74 (83)
-.|+.++.|+..|++++..|..++.++- .|+=++.+-=+..
T Consensus 28 ~~~k~~kke~~~L~~qv~~vk~~q~~q~kvDvF~RyFLs~YfS~~ 72 (161)
T 4ec6_A 28 TQLQSVKKESELLEEQIERVKETDISQSKIDTFGRYFLTYYFSQE 72 (161)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhCCcceeeehhhhHHHhCCC
Confidence 4689999999999999999998887543 4776666544433
No 200
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=30.04 E-value=62 Score=22.24 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038668 31 RQMVKVQVLEREIGLLQEEL 50 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL 50 (83)
|..++++.|...|.+|+..|
T Consensus 49 ~~~~~~~~l~~~i~~l~~~l 68 (171)
T 2p2u_A 49 RASQKSAPLLARRKELEDGV 68 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555443
No 201
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=30.04 E-value=83 Score=21.21 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=16.0
Q ss_pred hhhhhHHHHHHhccCCCCCCcccC
Q 038668 59 ASICCKEVDDFVGAKPDPLVAMYD 82 (83)
Q Consensus 59 aS~~CkEv~~~Ves~pDPLLP~t~ 82 (83)
+-.+|-=+-.|...-|+||+|..-
T Consensus 70 ~h~va~lLK~flreLpePLi~~~l 93 (201)
T 2ovj_A 70 IHAICSLLKDFLRNLKEPLLTFRL 93 (201)
T ss_dssp HHHHHHHHHHHHHTSSSCTTCTTT
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHH
Confidence 333444445667788999999754
No 202
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=29.90 E-value=89 Score=20.50 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 038668 36 VQVLEREIGLLQEELKS 52 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~ 52 (83)
++.|+++|.-|+.-++.
T Consensus 89 ~~~L~~~i~~l~~~l~~ 105 (146)
T 3hh0_A 89 REVLLAEQERIAKVLSH 105 (146)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444433333
No 203
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.84 E-value=67 Score=20.90 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
++.++|+.|......||.-|.++|.
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4445555554444555555544443
No 204
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.78 E-value=55 Score=18.57 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 038668 35 KVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~L 53 (83)
+|..|+.++..|++|-.+|
T Consensus 16 Qi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 16 QILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777777777776554
No 205
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=29.76 E-value=13 Score=24.75 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (83)
-|.++++..||.|+..|+.|++.|.
T Consensus 54 ~rk~~~~~~LE~e~~~L~~e~e~L~ 78 (107)
T 3a5t_A 54 VKRVTQKEELEKQKAELQQEVEKLA 78 (107)
T ss_dssp HHHHHHHHHHHHHHTTTSSTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577778777777777766654
No 206
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.52 E-value=11 Score=23.42 Aligned_cols=7 Identities=14% Similarity=-0.017 Sum_probs=4.9
Q ss_pred chhHHHH
Q 038668 26 LYGKRRQ 32 (83)
Q Consensus 26 ~~GkhR~ 32 (83)
|+++||.
T Consensus 41 FC~~HRy 47 (67)
T 1x4w_A 41 FCMLHRL 47 (67)
T ss_dssp CCTTTCS
T ss_pred ehhccCC
Confidence 6777774
No 207
>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*
Probab=29.40 E-value=27 Score=24.15 Aligned_cols=29 Identities=7% Similarity=0.102 Sum_probs=20.3
Q ss_pred HHHHHHhhhhc-cchhhhhhHHHHHHhccC
Q 038668 45 LLQEELKSVED-VQPASICCKEVDDFVGAK 73 (83)
Q Consensus 45 fLeeEL~~LE~-~~~aS~~CkEv~~~Ves~ 73 (83)
.|++-|++|+. ..+.+..-+++++|+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 259 (265)
T 4e6u_A 230 TSVQAIDQIKSEILPSVPEAQLLIDSLEQS 259 (265)
T ss_dssp CHHHHHHHHHHHTTTTCGGGHHHHHHHHHC
T ss_pred CHHHHHHHHHhhhcCCCHHHHHHHHHHhhc
Confidence 46777777776 545555678899998643
No 208
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=29.02 E-value=55 Score=26.87 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccchh-----hhhhHHHHHHhccCCCC
Q 038668 34 VKVQVLEREIGLLQEELKSVEDVQPA-----SICCKEVDDFVGAKPDP 76 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~a-----S~~CkEv~~~Ves~pDP 76 (83)
.++..|++|+..|++|++.|+.+=.. ...-+|+.+..+.-.||
T Consensus 454 ~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~ 501 (514)
T 2inr_A 454 TDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 501 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 36778888888888888888877322 33456666665544443
No 209
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=28.96 E-value=41 Score=28.52 Aligned_cols=30 Identities=13% Similarity=-0.045 Sum_probs=22.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 26 LYGKRRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 26 ~~GkhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
+-|.--..+++++|++|+..++.||+.+++
T Consensus 792 ~~~~~d~~~~~~rl~k~~~~~~~~~~~~~~ 821 (862)
T 1gax_A 792 LEGLLDVEEWRRRQEKRLKELLALAERSQR 821 (862)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444577888888888888888888876
No 210
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.75 E-value=43 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 038668 35 KVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~ 55 (83)
+++.|.+||.+++.++..+|.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANR 111 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666664
No 211
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=28.47 E-value=19 Score=22.94 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 038668 34 VKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~ 55 (83)
..+..|++|=.|-=.-|..+|-
T Consensus 15 ~~ve~lEkERDFYF~KLRdIEi 36 (82)
T 3tq7_B 15 LTVDGLEKERDFYFSKLRDIEL 36 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444545443
No 212
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Probab=28.28 E-value=22 Score=24.41 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=19.0
Q ss_pred HHHHHHhhhhccchhhhhhHHHHHHhccC
Q 038668 45 LLQEELKSVEDVQPASICCKEVDDFVGAK 73 (83)
Q Consensus 45 fLeeEL~~LE~~~~aS~~CkEv~~~Ves~ 73 (83)
.|++-|++|+...+-+.--+++++|+.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (262)
T 2qia_A 228 TLDEVKPEIAELAETYPEVKAFTDFFARS 256 (262)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHC
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 35666666666554455567888888764
No 213
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.08 E-value=76 Score=20.75 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 038668 34 VKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE 54 (83)
..++.|+++|.-|+.-++.|+
T Consensus 88 ~~~~~l~~~i~~L~~~~~~L~ 108 (142)
T 3gp4_A 88 KQRIELKNRIDVMQEALDRLD 108 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444443
No 214
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=27.72 E-value=43 Score=24.11 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 038668 35 KVQVLEREIGLLQEELK 51 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~ 51 (83)
.++.|+++|.-||+||.
T Consensus 136 tV~kLqkeiD~LEDeL~ 152 (175)
T 3mud_A 136 TTAKNEKSIDDLEEKVA 152 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47788888888888874
No 215
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=27.71 E-value=84 Score=19.86 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=20.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 24 LDLYGKRRQMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 24 ~D~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
.++.=|.|++.+|+.|..+... .|+++||+.
T Consensus 73 ~~~GhR~kIl~~I~~Lr~~~~~--~~~~~l~~~ 103 (106)
T 3bs5_A 73 TDNRDREAIWREIVKQRLKTDI--MEIRDMERL 103 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhh--HHHHHHHhc
Confidence 3444577889999999776544 366667654
No 216
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=27.56 E-value=60 Score=24.23 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=16.1
Q ss_pred chhHHHHHHHHHH---HHHHHHHHHHHHhhhhccchhhh
Q 038668 26 LYGKRRQMVKVQV---LEREIGLLQEELKSVEDVQPASI 61 (83)
Q Consensus 26 ~~GkhR~~ael~~---LeqEi~fLeeEL~~LE~~~~aS~ 61 (83)
.+-..|.++.+++ |.++++.||++|++|+.-..+|.
T Consensus 332 ~~~~~~~~~~~~~l~~~~~~~~~l~k~~~~~~~~~~~s~ 370 (372)
T 3pmo_A 332 AAEWKKSAARIRQLDDMARRLQQLEKRLAAVTSSGDASS 370 (372)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3334555555554 46788888888888877766664
No 217
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=27.39 E-value=82 Score=20.01 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~L 53 (83)
|...++..++..|..||.||.++
T Consensus 34 ~~~~e~~~~q~~i~~lE~eL~~~ 56 (95)
T 3mov_A 34 LLAKEKDNSRRMLTDKEREMAEI 56 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666654
No 218
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=27.30 E-value=93 Score=19.60 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=24.9
Q ss_pred cchhHHHHH-HHHHHHHHHHHHHHHHHhhhhc
Q 038668 25 DLYGKRRQM-VKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 25 D~~GkhR~~-ael~~LeqEi~fLeeEL~~LE~ 55 (83)
++.++|++. -.|..|||+=.|||.+|..++.
T Consensus 32 nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~ 63 (72)
T 2xu6_A 32 NLRQKKEKLLGKIANIEQNQLMLEDNLKQIDD 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 466777765 4688999999999999988875
No 219
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=27.21 E-value=49 Score=23.00 Aligned_cols=45 Identities=7% Similarity=0.173 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhc
Q 038668 27 YGKRRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVG 71 (83)
Q Consensus 27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 71 (83)
.+.|+...+-+.|-+-++-++..+..+++|=.--+-|.+|+.-+-
T Consensus 42 ~~~~g~~~~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~Qla 86 (136)
T 4adz_A 42 RGVHGYHKQKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVS 86 (136)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 445555555566666666666677777777777788999987553
No 220
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=27.00 E-value=88 Score=20.00 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE 54 (83)
|--+.++|..|-.|-..|++||+++.
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34467788888888888888888765
No 221
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=26.95 E-value=56 Score=21.40 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccchhh
Q 038668 34 VKVQVLEREIGLLQEELKSVEDVQPAS 60 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS 60 (83)
|+-.+|+|.+.-|-+||+.+-+.-.++
T Consensus 49 AKWaKL~Rk~DKl~~ele~l~~~l~~~ 75 (93)
T 3sjb_C 49 AKWTKNNRKLDSLDKEINNLKDEIQSE 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888888887776544433
No 222
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=26.95 E-value=75 Score=22.70 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 32 QMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
+..++++|++.|..|+.-|+.+++-
T Consensus 88 L~~~~~~L~~~~~~l~~~i~~~~~~ 112 (249)
T 3qao_A 88 LIEKKQRIETMLATLDLTIKNEKGE 112 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555555555555555555543
No 223
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=26.36 E-value=53 Score=22.07 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhhhccchh
Q 038668 37 QVLEREIGLLQEELKSVEDVQPA 59 (83)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~~~a 59 (83)
..+++.|.+|+++|+..+-+++.
T Consensus 56 ~~~e~ri~~Le~~L~~a~vid~~ 78 (158)
T 1grj_A 56 GFCEGRIKDIEAKLSNAQVIDVT 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHEEEECGG
T ss_pred HHHHHHHHHHHHHHhhCeecCcc
Confidence 34555677788777777666554
No 224
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.34 E-value=61 Score=21.81 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 038668 34 VKVQVLEREIGLLQEELKS 52 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~ 52 (83)
.+++.++.||-.|..||.+
T Consensus 82 ~~l~~~~kE~~~lK~el~~ 100 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIA 100 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 225
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=26.13 E-value=62 Score=22.56 Aligned_cols=36 Identities=8% Similarity=0.238 Sum_probs=28.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Q 038668 23 ALDLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQP 58 (83)
Q Consensus 23 ~~D~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~ 58 (83)
.|.+-=-+||.+.|..|+.-|..++..++.|+.+..
T Consensus 165 lPpl~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~ 200 (425)
T 1yf2_A 165 LPPLEEQKQIAKILTKIDEGIEIIEKSINKLERIKK 200 (425)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666788999999999999999988888876543
No 226
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=25.79 E-value=72 Score=19.84 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=21.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038668 24 LDLYGKRRQMVKVQVLEREIGLLQEELKSV 53 (83)
Q Consensus 24 ~D~~GkhR~~ael~~LeqEi~fLeeEL~~L 53 (83)
.|+|.- +-..+..|+++|+-..+.|++-
T Consensus 68 ~d~yaA--ID~a~dkLerQLrK~K~k~~~~ 95 (101)
T 3v26_X 68 QDMYAA--IDGLIDKLARQLTKHKDKLKQH 95 (101)
T ss_dssp SSSSHH--HHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 344432 4567899999999999999874
No 227
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=25.78 E-value=52 Score=21.60 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccchh
Q 038668 36 VQVLEREIGLLQEELKSVEDVQPA 59 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~~~~a 59 (83)
-.+|+|.+.-|-+||+.+.+.-.+
T Consensus 58 WAKL~Rk~DKl~~ele~l~~~L~s 81 (94)
T 3vlc_E 58 WTKNNRKLDSLDKEINNLKDEIQS 81 (94)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777787777777544333
No 228
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.34 E-value=70 Score=24.46 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccc------------hhhhhhHHHHH
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVEDVQ------------PASICCKEVDD 68 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~------------~aS~~CkEv~~ 68 (83)
+.++..|+.++.+|..|++.+.+|+..- ..-+.|.|+..
T Consensus 21 ~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~~~~~~~~~~~~~~~sC~~i~~ 71 (319)
T 1fzc_C 21 RYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIAN 71 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCEESCCCCSCCBSSHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCHHHHHh
Confidence 4556667777778888877777766420 13457999875
No 229
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=25.29 E-value=78 Score=17.72 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc
Q 038668 33 MVKVQVLEREIGLLQEELKSVEDVQ 57 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~ 57 (83)
-++|..|.++-.-||.|...|.++-
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455556666666666655555443
No 230
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=25.25 E-value=1e+02 Score=18.95 Aligned_cols=25 Identities=8% Similarity=0.238 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE 54 (83)
.+....|.+++.++.-||.-+..||
T Consensus 55 K~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 55 KRYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334445555555555555544443
No 231
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=25.22 E-value=71 Score=26.06 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc--ch---hhhhhHHHHHHhccCCCC
Q 038668 34 VKVQVLEREIGLLQEELKSVEDV--QP---ASICCKEVDDFVGAKPDP 76 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~--~~---aS~~CkEv~~~Ves~pDP 76 (83)
.++..|++|+..|++|++.|+.+ .+ -...-+|+.+..+.-.||
T Consensus 430 ~e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y~~~ 477 (496)
T 2nov_A 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP 477 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 46777888888888888888776 22 133456666665544443
No 232
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=25.18 E-value=91 Score=20.24 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE 54 (83)
|+-++...-..|+|+..|++++.+|-
T Consensus 6 ~~~~~~~~~~~e~e~~~l~~~~~el~ 31 (125)
T 1joc_A 6 RRALLERCLKGEGEIEKLQTKVLELQ 31 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44455555566667777766665543
No 233
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=24.98 E-value=49 Score=22.35 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhhhccch
Q 038668 37 QVLEREIGLLQEELKSVEDVQP 58 (83)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~~~ 58 (83)
..+++.|.+|+.+|+..+-+++
T Consensus 56 ~~~e~rI~~L~~~L~~A~vid~ 77 (158)
T 2p4v_A 56 REIDRRVRYLTKCMENLKIVDY 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHCEECCC
T ss_pred HHHHHHHHHHHHHHhhCeecCC
Confidence 4555666677776666554444
No 234
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=24.90 E-value=82 Score=20.96 Aligned_cols=26 Identities=15% Similarity=0.150 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccchh
Q 038668 34 VKVQVLEREIGLLQEELKSVEDVQPA 59 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~a 59 (83)
-+..++++.|.+|+++|+..+-+++.
T Consensus 53 ~~q~~~e~ri~~L~~~L~~a~vi~~~ 78 (156)
T 2f23_A 53 QEKARIEARIDSLEDILSRAVILEEG 78 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCC
Confidence 34556777888899888887776664
No 235
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.80 E-value=56 Score=20.29 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhh
Q 038668 38 VLEREIGLLQEELKSVE 54 (83)
Q Consensus 38 ~LeqEi~fLeeEL~~LE 54 (83)
.|.+|++.||.+|..|.
T Consensus 38 ~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 38 SLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 46678888887777764
No 236
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=24.77 E-value=41 Score=22.11 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccC
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAK 73 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~ 73 (83)
|+..=|.+||+.=--|++=|+..|.--.-.+.|++.++.++.+
T Consensus 38 eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~AE~k 80 (100)
T 1vp7_A 38 ELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQ 80 (100)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554556777888887778888999998877654
No 237
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=24.69 E-value=37 Score=22.33 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q 038668 35 KVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~~ 56 (83)
+|+.+..++.-|+.+...++|.
T Consensus 25 kI~~I~~ev~~L~~~V~~f~G~ 46 (99)
T 1m7k_A 25 KIIHVLEKVQYLEQEVEEFVGK 46 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444444444444444443
No 238
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=24.65 E-value=45 Score=20.67 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhhccc
Q 038668 41 REIGLLQEELKSVEDVQ 57 (83)
Q Consensus 41 qEi~fLeeEL~~LE~~~ 57 (83)
+|+..|++|++.|-+..
T Consensus 2 ~ev~~lkeei~~L~~~P 18 (85)
T 3h43_A 2 KENEILRRELDRMRVPP 18 (85)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHhcCCC
Confidence 57777888887775543
No 239
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.50 E-value=81 Score=20.73 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~~ 56 (83)
...-++..|..||.-|.+-+..||.-
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lEeg 97 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAMERG 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34466777888888888877777763
No 240
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=24.49 E-value=68 Score=20.27 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 32 QMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
+--+|+.||+-+.+||-.|.+-|+
T Consensus 50 ln~KL~~LEr~L~iLEAklss~~~ 73 (75)
T 3p8c_E 50 LNEKLTALERRIEYIEARVTKGET 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 334678888888888877765443
No 241
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=24.01 E-value=36 Score=20.87 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhhhccc
Q 038668 40 EREIGLLQEELKSVEDVQ 57 (83)
Q Consensus 40 eqEi~fLeeEL~~LE~~~ 57 (83)
=.=|.+|+++++++|...
T Consensus 51 ieYI~~Lq~~l~e~~~~~ 68 (76)
T 3u5v_A 51 VQVILGLEQQVRERNLNP 68 (76)
T ss_dssp HHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 345889999999988653
No 242
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=23.90 E-value=51 Score=24.50 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.5
Q ss_pred chhhhhhHHHHHHhcc
Q 038668 57 QPASICCKEVDDFVGA 72 (83)
Q Consensus 57 ~~aS~~CkEv~~~Ves 72 (83)
+-.|.-|++|.+|+|+
T Consensus 312 ~~~~~~~~~~~~~~~~ 327 (339)
T 3rty_A 312 QEVSRRCQALASFMET 327 (339)
T ss_dssp TTTTSSCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3478889999999986
No 243
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=23.90 E-value=86 Score=21.79 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (83)
.+++.++++++|+.-|+-+++.+.
T Consensus 33 ~l~~~i~q~d~elqQLefq~kr~~ 56 (150)
T 4dci_A 33 EISNGIANADQQLAQLEQEGQTVV 56 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777776653
No 244
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.66 E-value=71 Score=23.02 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 038668 33 MVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
.++++...++...|+.|.+.|..
T Consensus 35 ~~~l~~~~~~~~~l~~En~rLr~ 57 (255)
T 2j5u_A 35 LEELAQLESEVADLKKENKDLKE 57 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566656555544
No 245
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.66 E-value=96 Score=20.23 Aligned_cols=21 Identities=10% Similarity=0.298 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcc
Q 038668 36 VQVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~~ 56 (83)
++.|++.+..|++++++|+.+
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~ 103 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEA 103 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666544
No 246
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=23.55 E-value=1.1e+02 Score=20.11 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccch
Q 038668 32 QMVKVQVLEREIGLLQEELKSVEDVQP 58 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~~ 58 (83)
++-.++.++++|..|++.++. ||+..
T Consensus 52 L~~~~~~~~~~i~~l~~~~~~-~g~p~ 77 (171)
T 2rbd_A 52 IDEAIQAMQDENHQLEELLRS-NGVGL 77 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-CCCCC
Confidence 444577788888888888864 66543
No 247
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=23.48 E-value=85 Score=20.79 Aligned_cols=25 Identities=16% Similarity=0.075 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc
Q 038668 33 MVKVQVLEREIGLLQEELKSVEDVQ 57 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~LE~~~ 57 (83)
...++.|+++|..|+.-++.|+..-
T Consensus 96 ~~~~~~l~~qi~~L~~~~~~L~~~~ 120 (154)
T 2zhg_A 96 SQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888777776543
No 248
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.43 E-value=53 Score=25.57 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 32 QMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
+..+++.|++|+..++||++.|..
T Consensus 68 l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 68 IKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344556666777777777776654
No 249
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.42 E-value=1.1e+02 Score=17.23 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (83)
.+..+|..=+.||..|++|=++|-
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 455667777788888887766653
No 250
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.41 E-value=1.4e+02 Score=23.89 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=29.1
Q ss_pred HHH-HHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCCCCccc
Q 038668 33 MVK-VQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPLVAMY 81 (83)
Q Consensus 33 ~ae-l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t 81 (83)
.++ .+.|..+|.-|++++.++|. --.+++..|-..++|-.|+.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~------~~~~~l~~iPN~~~~~vP~g 152 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEE------ERDKLMLNVGNILHESVPIA 152 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHTTCCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCccCCCC
Confidence 445 66666677777766666653 34577777888888888864
No 251
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.32 E-value=72 Score=19.68 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccchhh
Q 038668 32 QMVKVQVLEREIGLLQEELKSVEDVQPAS 60 (83)
Q Consensus 32 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS 60 (83)
...+|+.+..+|.-|+..+++|..++..+
T Consensus 10 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~ 38 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENVEEVKRKHSAI 38 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777666543
No 252
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=23.00 E-value=75 Score=22.64 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=25.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 038668 25 DLYGKRRQMVKVQVLEREIGLLQEELKSVEDVQ 57 (83)
Q Consensus 25 D~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~ 57 (83)
.+-=-.++...|..++..|..++.+++.|+.+-
T Consensus 353 pl~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk 385 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIR 385 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456788888899999999999998887653
No 253
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.92 E-value=1.2e+02 Score=20.45 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=30.4
Q ss_pred chhHHHH-HHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCCC
Q 038668 26 LYGKRRQ-MVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPL 77 (83)
Q Consensus 26 ~~GkhR~-~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPL 77 (83)
|-|..|+ |+.|+.|+.||.-.|..|- .|..--|+-..-+|..||.+
T Consensus 26 ~~~~~~~tM~~ieeLQ~Ei~~~E~QL~------iArQKLkdAe~~~E~DPDev 72 (107)
T 2k48_A 26 FQGIDPFTMSTLQELQENITAHEQQLV------TARQKLKDAEKAVEVDPDDV 72 (107)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCCcHH
Confidence 4566554 6778888777777776653 24444677777777777754
No 254
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.91 E-value=88 Score=23.95 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (83)
.++..|+.++..|..|++.|.+|+
T Consensus 30 ~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 30 ELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555444
No 255
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=22.85 E-value=53 Score=21.10 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhhhhccchh
Q 038668 37 QVLEREIGLLQEELKSVEDVQPA 59 (83)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~~~a 59 (83)
|++++++.-+|+||+..+-...+
T Consensus 13 q~mQ~~m~~~QeeL~~~~v~g~s 35 (99)
T 3f42_A 13 DGMKKEFSQLEEKNKDTIHTSKS 35 (99)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCEEEEEE
Confidence 88999999999999988755443
No 256
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=22.79 E-value=75 Score=18.32 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q 038668 32 QMVKVQVLEREIGLL 46 (83)
Q Consensus 32 ~~ael~~LeqEi~fL 46 (83)
+..+++++|+||+-+
T Consensus 26 Mv~~~~~~~~~~~~~ 40 (42)
T 3g9r_A 26 LKSKIKRIENEIKRI 40 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 445677788777654
No 257
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=22.74 E-value=1.1e+02 Score=20.25 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=14.8
Q ss_pred hhhHHHHHHhccCCCCCCcccC
Q 038668 61 ICCKEVDDFVGAKPDPLVAMYD 82 (83)
Q Consensus 61 ~~CkEv~~~Ves~pDPLLP~t~ 82 (83)
.+|-=+-.|...-||||+|..-
T Consensus 79 ~va~lLK~flreLp~pLl~~~l 100 (201)
T 3msx_B 79 VIASVLKDFLRNIPGSIFSSDL 100 (201)
T ss_dssp HHHHHHHHHHHTSTTTTTTGGG
T ss_pred HHHHHHHHHHHhCCCCCCCHHH
Confidence 3444445677788999998753
No 258
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=22.57 E-value=1.2e+02 Score=18.41 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 038668 37 QVLEREIGLLQEELKSVE 54 (83)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE 54 (83)
+.|..|..-+.+.++.+|
T Consensus 12 qaLk~Ekdna~e~~e~lE 29 (75)
T 3mtu_A 12 QMLKLDKENALDRAEQAE 29 (75)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 335555555555555555
No 259
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=22.42 E-value=40 Score=23.53 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCC
Q 038668 30 RRQMVKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDP 76 (83)
Q Consensus 30 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 76 (83)
||...=..+..-+.+--++-+.=|||+-.|-..--||+..+-+.+||
T Consensus 16 hR~eVVtRRt~f~L~Ka~~R~HILEGL~iAl~nIDeVI~iIR~S~~~ 62 (156)
T 3ku8_A 16 PRGSHMTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTP 62 (156)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCH
Confidence 66666666677777778888888999999998899999998888776
No 260
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=22.24 E-value=92 Score=18.75 Aligned_cols=19 Identities=5% Similarity=0.195 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 038668 36 VQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE 54 (83)
.+.|+.++.-|+..++.|.
T Consensus 27 ~~~i~~~l~~L~~~v~~L~ 45 (103)
T 4i0x_B 27 KEFVTENLDQLESRAQKLV 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444443
No 261
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=22.06 E-value=74 Score=22.94 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 038668 33 MVKVQVLEREIGLLQEELKS 52 (83)
Q Consensus 33 ~ael~~LeqEi~fLeeEL~~ 52 (83)
..+++.|+++|..++|.|++
T Consensus 218 ~~~~~~l~~~~~~i~e~~~~ 237 (244)
T 3gnl_A 218 QAKIRELEHKIALVEDVLKE 237 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34556666777777776654
No 262
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=22.03 E-value=33 Score=19.71 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE 54 (83)
+-.-+.+++++++..++++|+..+
T Consensus 137 ~DiTe~k~~e~~l~~~~~~l~~~~ 160 (162)
T 3sw1_A 137 KDVSRQVELERELAELRARPKPDE 160 (162)
T ss_dssp EECHHHHHHHHHHHHHTC------
T ss_pred EeCcHHHHHHHHHHHHHHHHHHHh
Confidence 344556667777777776666543
No 263
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=22.02 E-value=1.2e+02 Score=22.23 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Q 038668 27 YGKRRQMVKVQVLEREIGLLQEELKSVEDVQP 58 (83)
Q Consensus 27 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~ 58 (83)
.+|-.+.++-..|+--|++.||.|+-|-..=.
T Consensus 155 ~mKa~Ll~eqReLddkIklgeEQL~~L~~sL~ 186 (190)
T 3thf_A 155 NMKAKLIADARDLAVRIKGSEEQLSSLSDALV 186 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhHHHHHHhhHHHHHHHHHhhc
Confidence 47889999999999999999999998865433
No 264
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=22.01 E-value=1.1e+02 Score=19.23 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038668 29 KRRQMVKVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 29 khR~~ael~~LeqEi~fLeeEL~~LE 54 (83)
|..++++|..-.+++.-|+.||+.+-
T Consensus 69 R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 69 RGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888889999999999999988754
No 265
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.94 E-value=80 Score=23.47 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 038668 34 VKVQVLEREIGLLQEELKS 52 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~ 52 (83)
++|+.||++|.-++-|+++
T Consensus 450 ~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 450 GEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445544444444443
No 266
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=21.92 E-value=46 Score=21.71 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhhh
Q 038668 36 VQVLEREIGLLQEELKSVEDVQPASI 61 (83)
Q Consensus 36 l~~LeqEi~fLeeEL~~LE~~~~aS~ 61 (83)
|+.|.+++..|+++...++.+.....
T Consensus 76 Ik~Lq~~~~~l~~~~~~~~~l~~~n~ 101 (118)
T 4ati_A 76 IRKLQREQQRAKDLENRQKKLEHANR 101 (118)
T ss_dssp HHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666555554444433
No 267
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=21.80 E-value=19 Score=25.12 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 038668 35 KVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE~ 55 (83)
+.+.+.+|++.|++++++|+.
T Consensus 257 ~~~~~~~~~~~l~~~~~~l~~ 277 (285)
T 3rvy_A 257 HEDNINNEIIKLREEIVELKE 277 (285)
T ss_dssp ---------------------
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 345555555666655555543
No 268
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=21.76 E-value=52 Score=20.99 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccchhhhhhHHHHHHhccCCCCC
Q 038668 34 VKVQVLEREIGLLQEELKSVEDVQPASICCKEVDDFVGAKPDPL 77 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPL 77 (83)
..|+.|+.||...|..|- .|..-.++-..-++..||++
T Consensus 5 ~~l~eLq~e~~~~E~QL~------~A~QKLkdA~~~~e~DPDev 42 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLV------TTRQKLKDAERAVELDPDDV 42 (78)
T ss_dssp CHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCCcHH
Confidence 344455544444444432 23334566666777777753
No 269
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.70 E-value=84 Score=22.98 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 31 RQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 31 R~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
.++.|+.+|.+++.-.+.|++.|..
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888777543
No 270
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=21.65 E-value=49 Score=18.02 Aligned_cols=12 Identities=17% Similarity=0.374 Sum_probs=4.9
Q ss_pred HHHHHHHHhhhh
Q 038668 43 IGLLQEELKSVE 54 (83)
Q Consensus 43 i~fLeeEL~~LE 54 (83)
|..||+.|++||
T Consensus 54 ~~~Le~rl~~LE 65 (66)
T 1d66_A 54 LTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHHHHHc
Confidence 334444444443
No 271
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=21.62 E-value=65 Score=22.60 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 038668 34 VKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 34 ael~~LeqEi~fLeeEL~~LE~ 55 (83)
..|+.||++|..+.++|..|..
T Consensus 81 ~~v~~LE~~id~~~~~l~~l~~ 102 (177)
T 1nog_A 81 EMIDYLEARVKEMKAEIGKIEL 102 (177)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHHHHHhhCCCCCc
Confidence 7899999999999999987753
No 272
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.37 E-value=50 Score=25.08 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 038668 28 GKRRQMVKVQVLEREIGLLQEELKSVED 55 (83)
Q Consensus 28 GkhR~~ael~~LeqEi~fLeeEL~~LE~ 55 (83)
+...+++++..++.+|..|++|+...|.
T Consensus 450 ~~e~l~~e~~~~~~~i~~l~~~~~~~~~ 477 (597)
T 3oja_B 450 GNEQLEAEVNELRAEVQQLTNEQIQQEQ 477 (597)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 273
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Probab=21.30 E-value=58 Score=25.16 Aligned_cols=18 Identities=44% Similarity=0.722 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 038668 37 QVLEREIGLLQEELKSVE 54 (83)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE 54 (83)
|-|||+|+-|.||.++|-
T Consensus 245 qDLerql~~LR~eFN~Ls 262 (278)
T 1slq_A 245 QDLERQLGELREEFNALS 262 (278)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 679999999999998874
No 274
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=21.13 E-value=59 Score=21.98 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 038668 35 KVQVLEREIGLLQEELKSVE 54 (83)
Q Consensus 35 el~~LeqEi~fLeeEL~~LE 54 (83)
|+.+|.+|+..|+++|+...
T Consensus 3 e~~~l~~~~~~l~~~~~~~~ 22 (340)
T 1got_B 3 ELDQLRQEAEQLKNQIRDAR 22 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56667777776666666543
No 275
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=20.81 E-value=74 Score=20.70 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=28.4
Q ss_pred CCcchhHHHHHHHHHHHH----HHHHHHHHHHhhhhccchhh
Q 038668 23 ALDLYGKRRQMVKVQVLE----REIGLLQEELKSVEDVQPAS 60 (83)
Q Consensus 23 ~~D~~GkhR~~ael~~Le----qEi~fLeeEL~~LE~~~~aS 60 (83)
+---.|-.|+.+++..|. ..|.+|+++|+..+=+++..
T Consensus 7 ~iT~~d~~rL~~~l~~~~~~~~~~i~~L~~~L~~A~vi~~~~ 48 (136)
T 3bmb_A 7 IINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEE 48 (136)
T ss_dssp EEEHHHHHHHHHHHHSGGGTTCHHHHHHHHHHHTCEEECGGG
T ss_pred EECHHHHHHHHHHHHhhhhcCcHHHHHHHHHHhccEEECCcc
Confidence 445567888988888775 35899999998887776543
No 276
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}
Probab=20.63 E-value=43 Score=23.57 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=18.6
Q ss_pred HHHHHHhhhhccchhhh----hhHHHHHHhccC
Q 038668 45 LLQEELKSVEDVQPASI----CCKEVDDFVGAK 73 (83)
Q Consensus 45 fLeeEL~~LE~~~~aS~----~CkEv~~~Ves~ 73 (83)
.|++-|++|+..-+.+. -.+++++|+.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 277 (283)
T 4eqy_A 245 SLEEAKVQLSELAQAGGDGDAAVKALVDFVESS 277 (283)
T ss_dssp CHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhcccCCchHHHHHHHHHHHhhc
Confidence 35666777665543333 568999998643
No 277
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=20.35 E-value=84 Score=17.33 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 038668 29 KRRQMVKVQVLEREIG 44 (83)
Q Consensus 29 khR~~ael~~LeqEi~ 44 (83)
|-.+.|+++.+.|||.
T Consensus 19 kaeilaalkkikqeia 34 (35)
T 1rh4_A 19 KAEILAALKKIKQEIA 34 (35)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4456778888888874
No 278
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=20.20 E-value=1.1e+02 Score=20.74 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 038668 37 QVLEREIGLLQEELKSVEDV 56 (83)
Q Consensus 37 ~~LeqEi~fLeeEL~~LE~~ 56 (83)
+.|++++..|+++++.|..+
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~ 101 (278)
T 1r8e_A 82 AFYTEQERQIREKLDFLSAL 101 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 279
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.02 E-value=1e+02 Score=19.33 Aligned_cols=11 Identities=36% Similarity=0.389 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 038668 40 EREIGLLQEEL 50 (83)
Q Consensus 40 eqEi~fLeeEL 50 (83)
+-||.-|++++
T Consensus 76 ~~e~dnl~~~~ 86 (93)
T 3s4r_A 76 EVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
Done!