BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038669
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
Arabidopsis Thaliana Superman Protein
Length = 39
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 153 RTHECSICHKSFPTGQALGGHKRCH 177
R++ CS C + F + QALGGH H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 98 FKCSVCDKAFSSYQALGGHKASH 120
+ CS C + F S QALGGH H
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVH 29
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 98 FKCSVCDKAFSSYQALGGHKASHRKGSG 125
FKCS CD+ F+ L H+ +H + SG
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 155 HECSICHKSFPTGQALGGHKRCH 177
++C +CHKSF G +L H+R H
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIH 35
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 98 FKCSVCDKAFSSYQALGGHKASH 120
++CSVC KAFS Q+L H+ H
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIH 35
>pdb|3Q8I|A Chain A, Crystal Structure Of Anopheles Gambiae Odorant Binding
Protein 4 In Complex With Indole
Length = 124
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 14 PPFHFEEANLHCLEPWTKRKRSKRPHNPPTEEEYLALCLVMLA 56
P F EEA LH L ++S P NP E + A+C+ +A
Sbjct: 19 PKFKVEEAELHGL------RKSIFPANPDKELKCYAMCIAQMA 55
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 98 FKCSVCDKAFSSYQALGGHKASH 120
F+C CDK+F AL H+ H
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIH 35
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 146 GVPNATGRTHECSICHKSFPTGQALGGHKRCH 177
G ++G+TH C +C K F + L HK H
Sbjct: 1 GSSGSSGKTHLCDMCGKKFKSKGTLKSHKLLH 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,160,511
Number of Sequences: 62578
Number of extensions: 193709
Number of successful extensions: 567
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 35
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)