BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038670
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YDA|A Chain A, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Y103f,Y130f, A198f Variant
pdb|2YDA|B Chain B, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Y103f,Y130f, A198f Variant
Length = 294
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 3 SIQNTVHYCSVSRGNRSLYVYSGGDHEIENLATLCLERTPPFHKWYFETIGKRIYGFLIE 62
+I+N +H R N ++ VYSG D I +A+ L+ F Y + I +E
Sbjct: 157 TIENIIHTLDYKRLNPNMLVYSGSDMLIATVASTGLDGNVAFGSNYLPEVTVTIKKLAME 216
>pdb|1W37|A Chain A, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|B Chain B, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|C Chain C, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|D Chain D, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W3N|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3T|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
Length = 294
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 3 SIQNTVHYCSVSRGNRSLYVYSGGDHEIENLATLCLE 39
+I+N +H R N ++ VYSG D I +A+ L+
Sbjct: 157 TIENIIHTLDYKRLNPNMLVYSGSDMLIATVASTGLD 193
>pdb|3EGD|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 157
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 53 GKRIYGFLIEDGYAYFMIADEGLGNRGALQFLEHLRDEF 91
G + ++IE G Y ++ + + A +LE L EF
Sbjct: 57 GAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEF 95
>pdb|2NUP|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 196
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 53 GKRIYGFLIEDGYAYFMIADEGLGNRGALQFLEHLRDEF 91
G + ++IE G Y ++ + + A +LE L EF
Sbjct: 58 GAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEF 96
>pdb|1W3I|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
Length = 293
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 3 SIQNTVHYCSVSRGNRSLYVYSGGDHEIENLATLCLE 39
+I+N +H R N ++ VYSG D I +A+ L+
Sbjct: 156 TIENIIHTLDYKRLNPNMLVYSGSDMLIATVASTGLD 192
>pdb|1IFQ|A Chain A, Sec22b N-Terminal Domain
pdb|1IFQ|B Chain B, Sec22b N-Terminal Domain
Length = 138
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 53 GKRIYGFLIEDGYAYFMIADEGLGNRGALQFLEHLRDEF 91
G + ++IE G Y ++ + + A +LE L EF
Sbjct: 68 GAXTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEF 106
>pdb|1GUI|A Chain A, Cbm4 Structure And Function
Length = 155
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 53 GKRIYGFLIEDGYAYFMIADEG 74
G R+ + + DGYAY IAD G
Sbjct: 34 GARVSDYGVRDGYAYITIADPG 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,098,347
Number of Sequences: 62578
Number of extensions: 273593
Number of successful extensions: 547
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 8
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)