Query 038670
Match_columns 259
No_of_seqs 155 out of 477
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 23:30:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4afi_A AP-3 complex subunit de 100.0 7.2E-36 2.5E-40 256.4 16.0 119 5-128 53-172 (173)
2 4b93_A Vesicle-associated memb 100.0 5.7E-35 1.9E-39 252.8 16.4 118 6-128 2-120 (189)
3 2vx8_A Nucleoporin-like protei 100.0 6.4E-31 2.2E-35 224.8 12.5 118 6-128 44-162 (169)
4 2nut_C Vesicle-trafficking pro 99.9 1.3E-26 4.5E-31 200.6 15.3 116 7-128 2-129 (196)
5 3bw6_A Synaptobrevin homolog Y 99.9 9.5E-22 3.2E-26 163.4 14.7 116 5-128 4-138 (144)
6 3kyq_A YKT6, synaptobrevin hom 99.7 1.9E-16 6.5E-21 138.2 12.7 113 7-128 3-133 (199)
7 2fh5_A Signal recognition part 97.3 0.00062 2.1E-08 58.8 8.1 116 9-128 13-135 (185)
8 3tjz_C Coatomer subunit zeta-1 88.8 7.8 0.00027 31.6 12.1 88 7-95 12-105 (153)
9 1w63_Q Adapter-related protein 88.3 7.6 0.00026 31.6 11.8 82 15-96 11-96 (158)
10 2vgl_S AP-2 complex subunit si 87.6 6 0.00021 31.4 10.5 80 15-96 11-96 (142)
11 2vgl_M AP-2 complex subunit MU 84.7 14 0.00047 34.7 13.0 81 15-96 11-94 (435)
12 1w63_M Adaptor-related protein 82.6 6.2 0.00021 36.9 9.6 90 7-96 2-96 (423)
13 3hd7_A Vesicle-associated memb 50.9 1.5 5.3E-05 33.1 -1.8 22 235-256 55-76 (91)
14 2fz0_A R-snare NYV1P, V-snare 46.1 33 0.0011 28.2 5.3 84 33-132 50-141 (149)
15 3cue_A Transport protein parti 45.2 95 0.0032 27.1 8.5 78 46-126 118-218 (219)
16 2j3t_D Trafficking protein par 44.1 1.6E+02 0.0055 25.5 10.2 88 36-128 120-211 (219)
17 3kf9_B MLCK2, myosin light cha 43.6 5.1 0.00017 23.0 0.1 12 241-252 1-12 (22)
18 2j3w_A Sedlin, trafficking pro 41.1 1.3E+02 0.0045 23.7 12.6 114 8-126 7-139 (142)
19 2j3t_C Trafficking protein par 36.9 1.6E+02 0.0054 23.4 11.7 115 8-127 4-138 (145)
20 3cue_C Transport protein parti 33.1 1.5E+02 0.0052 24.0 7.5 90 35-126 52-156 (159)
21 2kog_A Vesicle-associated memb 32.5 4.1 0.00014 32.3 -2.1 20 235-254 83-102 (119)
22 4ftx_A Protein SLM4; EGO compl 32.4 1.3E+02 0.0043 25.3 6.8 51 45-95 93-157 (170)
23 2o5g_B CAM, smooth muscle myos 30.9 8.7 0.0003 22.9 -0.3 16 240-255 2-17 (26)
24 2jxf_A NS4B(40-69), genome pol 24.2 35 0.0012 20.8 1.5 15 237-251 4-18 (30)
No 1
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.2e-36 Score=256.45 Aligned_cols=119 Identities=14% Similarity=0.272 Sum_probs=113.5
Q ss_pred cceeEEEEEEcCCeeEEeeeCCCCCHHHHHHHHHhcCCCCCceEEEEeCCEEEEEEEeCCEEEEEEecCCCChhhHHHHH
Q 038670 5 QNTVHYCSVSRGNRSLYVYSGGDHEIENLATLCLERTPPFHKWYFETIGKRIYGFLIEDGYAYFMIADEGLGNRGALQFL 84 (259)
Q Consensus 5 ~~~IlYA~VARg~tILAEys~~~gNf~~ia~~iL~Klp~~~~k~s~~~g~y~FhyL~edgivYlcItd~s~~k~iaF~FL 84 (259)
.++|+|||||||++|||||+..+|||..+|++||+|+|+++.|+|++.++|+|||++++|++||||||+++++++||+||
T Consensus 53 ~M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 53 AMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred cccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-ccCCCCCCCCccccccccccHHHHHHHHHhhhc
Q 038670 85 EHLRDEFKKVA-KKGSRGSFSGMNAIGVQEQLVPVIRRLITSLEN 128 (259)
Q Consensus 85 eeIk~eF~~~y-~~~~~a~a~a~~~~~~~~eF~pvLq~lM~sln~ 128 (259)
++|+++|.++| .++.++.+|+| +.+|+++|+++|++||.
T Consensus 133 edI~~eF~~~yg~~~~ta~pya~-----~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYGSRAQTALPYAM-----NSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHGGGGGTCCTTTT-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhccCcch-----hHHHHHHHHHHHHHhcC
Confidence 99999999999 55678888887 88999999999999985
No 2
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=5.7e-35 Score=252.84 Aligned_cols=118 Identities=14% Similarity=0.275 Sum_probs=111.2
Q ss_pred ceeEEEEEEcCCeeEEeeeCCCCCHHHHHHHHHhcCCCCCceEEEEeCCEEEEEEEeCCEEEEEEecCCCChhhHHHHHH
Q 038670 6 NTVHYCSVSRGNRSLYVYSGGDHEIENLATLCLERTPPFHKWYFETIGKRIYGFLIEDGYAYFMIADEGLGNRGALQFLE 85 (259)
Q Consensus 6 ~~IlYA~VARg~tILAEys~~~gNf~~ia~~iL~Klp~~~~k~s~~~g~y~FhyL~edgivYlcItd~s~~k~iaF~FLe 85 (259)
++|+|||||||++|||||+..+|||.++|++||+++|+.++|+||+.|+|+|||++++|++|+||||++||+++||+||+
T Consensus 2 M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~ 81 (189)
T 4b93_A 2 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLN 81 (189)
T ss_dssp CSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHH
T ss_pred CceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-ccCCCCCCCCccccccccccHHHHHHHHHhhhc
Q 038670 86 HLRDEFKKVA-KKGSRGSFSGMNAIGVQEQLVPVIRRLITSLEN 128 (259)
Q Consensus 86 eIk~eF~~~y-~~~~~a~a~a~~~~~~~~eF~pvLq~lM~sln~ 128 (259)
+|+++|...| ..+.++.++++ +.+|+++|+++|+.++.
T Consensus 82 ~i~~eF~~~~~~~~~~~~~~~~-----~~~f~~~l~~~~~~y~d 120 (189)
T 4b93_A 82 EVKKRFQTTYGSRAQTALPYAM-----NSEFSSVLAAQLKHHSE 120 (189)
T ss_dssp HHHHHHHHHHGGGGGTCCTTTT-----HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhccccccccCCccc-----cchhhHHHHHHHHhhhc
Confidence 9999999999 44567777776 78999999999998874
No 3
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.97 E-value=6.4e-31 Score=224.85 Aligned_cols=118 Identities=14% Similarity=0.271 Sum_probs=105.1
Q ss_pred ceeEEEEEEcCCeeEEeeeCCCCCHHHHHHHHHhcCCCCCceEEEEeCCEEEEEEEeCCEEEEEEecCCCChhhHHHHHH
Q 038670 6 NTVHYCSVSRGNRSLYVYSGGDHEIENLATLCLERTPPFHKWYFETIGKRIYGFLIEDGYAYFMIADEGLGNRGALQFLE 85 (259)
Q Consensus 6 ~~IlYA~VARg~tILAEys~~~gNf~~ia~~iL~Klp~~~~k~s~~~g~y~FhyL~edgivYlcItd~s~~k~iaF~FLe 85 (259)
++|+|||||||++|||||++..+||..+++.||+++++.+.|.+|+.|+|+|||+++||++||||||++||+++||+||+
T Consensus 44 M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLe 123 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLN 123 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHH
T ss_pred CceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHH
Confidence 67999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-cCCCCCCCCccccccccccHHHHHHHHHhhhc
Q 038670 86 HLRDEFKKVAK-KGSRGSFSGMNAIGVQEQLVPVIRRLITSLEN 128 (259)
Q Consensus 86 eIk~eF~~~y~-~~~~a~a~a~~~~~~~~eF~pvLq~lM~sln~ 128 (259)
+|+++|.++|. .+.++.+|+| +.+|+++|++.|++||.
T Consensus 124 dI~~eF~~~y~~~~~~a~pysf-----~~eF~~~Lk~~~~~~~~ 162 (169)
T 2vx8_A 124 EVKKRFQTTYGSRAQTALPYAM-----NSEFSSVLAAQLKHHSE 162 (169)
T ss_dssp HHHHHHHHHHTTGGGTCCTTTT-----HHHHHHHHSCC------
T ss_pred HHHHHHHHHhhhhhhccCCcch-----hHHHHHHHHHHHHHhcC
Confidence 99999999994 4555667765 77999999999999973
No 4
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=99.94 E-value=1.3e-26 Score=200.56 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=103.0
Q ss_pred eeEEEEEEcC--CeeEEeeeCCC---CC----HHHHHHHHHhcCCC-CCceEEEEeCCEEEEEEEeCCEEEEEEecCCCC
Q 038670 7 TVHYCSVSRG--NRSLYVYSGGD---HE----IENLATLCLERTPP-FHKWYFETIGKRIYGFLIEDGYAYFMIADEGLG 76 (259)
Q Consensus 7 ~IlYA~VARg--~tILAEys~~~---gN----f~~ia~~iL~Klp~-~~~k~s~~~g~y~FhyL~edgivYlcItd~s~~ 76 (259)
||+|+||||+ ++|||||++.+ |+ |.++++.+|+++|+ .+.++||+.|+|+|||++++|++|+||||++||
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp 81 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 81 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence 7999999999 89999998643 44 89999999999997 789999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcc-C-CCCCCCCccccccccccHHHHHHHHHhhhc
Q 038670 77 NRGALQFLEHLRDEFKKVAKK-G-SRGSFSGMNAIGVQEQLVPVIRRLITSLEN 128 (259)
Q Consensus 77 k~iaF~FLeeIk~eF~~~y~~-~-~~a~a~a~~~~~~~~eF~pvLq~lM~sln~ 128 (259)
+++||+||++|+++|...|.. + ..+.+|++ .+|+++|+++|+.+|.
T Consensus 82 ~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~------~~f~~~l~~~~~~y~~ 129 (196)
T 2nut_C 82 KKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSF------IEFDTFIQKTKKLYID 129 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTT------GGGHHHHHHHHTTTSC
T ss_pred hHHHHHHHHHHHHHHHHhccchhccccCCCch------HHHHHHHHHHHHHhcC
Confidence 999999999999999999943 3 23566665 4999999999999875
No 5
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.87 E-value=9.5e-22 Score=163.41 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=95.8
Q ss_pred cceeEEEEEEcC----CeeEEeeeCCC----------CCH-HHHHHHHHhcCCCCCceEEEEeCCEEEEEE-EeCCEEEE
Q 038670 5 QNTVHYCSVSRG----NRSLYVYSGGD----------HEI-ENLATLCLERTPPFHKWYFETIGKRIYGFL-IEDGYAYF 68 (259)
Q Consensus 5 ~~~IlYA~VARg----~tILAEys~~~----------gNf-~~ia~~iL~Klp~~~~k~s~~~g~y~FhyL-~edgivYl 68 (259)
.+.|+|.+|+|+ .++|+++++.+ ++| ..++++|++|+|+. .|.|++.++|+|||+ ++||++||
T Consensus 4 ~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~-~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 4 AMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-QRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT-EEEEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC-ceEEEEeCCEEEEEEEecCCEEEE
Confidence 345666669997 78999999877 677 78999999999984 899999999999999 88999999
Q ss_pred EEecCCCChhhHHHHHHHHHHHHHHhhc-c-CCC-CCCCCccccccccccHHHHHHHHHhhhc
Q 038670 69 MIADEGLGNRGALQFLEHLRDEFKKVAK-K-GSR-GSFSGMNAIGVQEQLVPVIRRLITSLEN 128 (259)
Q Consensus 69 cItd~s~~k~iaF~FLeeIk~eF~~~y~-~-~~~-a~a~a~~~~~~~~eF~pvLq~lM~sln~ 128 (259)
||||++||+++||.||++|+++|.++|. . +.+ +.+++ +.+| |.|.+.|+.+++
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~------~~~f-~~l~~~i~kYqd 138 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND------ALKM-KQLDTYISKYQD 138 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG------GGCC-THHHHHHHHTSC
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC------Ccch-HHHHHHHHHhCc
Confidence 9999999999999999999999999993 3 433 33221 1355 788888887754
No 6
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=99.69 E-value=1.9e-16 Score=138.23 Aligned_cols=113 Identities=21% Similarity=0.197 Sum_probs=85.9
Q ss_pred eeEEEEEEc-C---CeeEEeeeCCC----------CCHHHHH-HHHHhcCCCCCceEEEEeCCEEEE-EEEeCCEEEEEE
Q 038670 7 TVHYCSVSR-G---NRSLYVYSGGD----------HEIENLA-TLCLERTPPFHKWYFETIGKRIYG-FLIEDGYAYFMI 70 (259)
Q Consensus 7 ~IlYA~VAR-g---~tILAEys~~~----------gNf~~ia-~~iL~Klp~~~~k~s~~~g~y~Fh-yL~edgivYlcI 70 (259)
-|++-.|.+ + .++|+...+.+ ++|-.++ +.+++++|+ +.|.|++.|+|+|| |+.+||++|+||
T Consensus 3 k~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~-~~r~s~~~~~y~fH~y~~~~gl~yl~i 81 (199)
T 3kyq_A 3 KLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK-GSRASVKEQEYLCHVYVRSDSLAGVVI 81 (199)
T ss_dssp CEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT-TEEEEEECSSEEEEEEECTTSEEEEEE
T ss_pred eEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC-CCeEEEEeCCEEEEEEEecCCEEEEEE
Confidence 355556665 2 25666554433 5666655 589999887 68999999999999 999999999999
Q ss_pred ecCCCChhhHHHHHHHHHHHHHHhhcc--CCCCCCCCccccccccccHHHHHHHHHhhhc
Q 038670 71 ADEGLGNRGALQFLEHLRDEFKKVAKK--GSRGSFSGMNAIGVQEQLVPVIRRLITSLEN 128 (259)
Q Consensus 71 td~s~~k~iaF~FLeeIk~eF~~~y~~--~~~a~a~a~~~~~~~~eF~pvLq~lM~sln~ 128 (259)
||++||+++||+||++|+++|...|.. +..+.+ . ..+| +.|.++|+.+|.
T Consensus 82 td~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~-~------~~~f-~~l~~~m~~Y~d 133 (199)
T 3kyq_A 82 ADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSP-A------TIHY-TALDGHLSRYQN 133 (199)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCT-T------TCCC-CTHHHHHHHTTS
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccc-c------cccc-HHHHHHHHHhCC
Confidence 999999999999999999999999942 322211 1 1246 678888888764
No 7
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.32 E-value=0.00062 Score=58.81 Aligned_cols=116 Identities=11% Similarity=0.114 Sum_probs=74.5
Q ss_pred EEEEEEcCCeeEEeeeCCCC----CHHHHHHHHHhcCCCCCceEEEEeCCEEEEEEEeC--CEEEEEEecCCCChhhHHH
Q 038670 9 HYCSVSRGNRSLYVYSGGDH----EIENLATLCLERTPPFHKWYFETIGKRIYGFLIED--GYAYFMIADEGLGNRGALQ 82 (259)
Q Consensus 9 lYA~VARg~tILAEys~~~g----Nf~~ia~~iL~Klp~~~~k~s~~~g~y~FhyL~ed--givYlcItd~s~~k~iaF~ 82 (259)
+.+.+.+|++||-.|+.... ....+++.+|=.=.. +..+|++|+|+..|..++ +++|++|-..-+.-.-.=.
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~--~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~ 90 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG--GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK 90 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcccc--CCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHH
Confidence 46778899999998854332 344556655433222 234688999999999986 6999999888766666677
Q ss_pred HHHHHHHHHHHhhccCCCC-CCCCccccccccccHHHHHHHHHhhhc
Q 038670 83 FLEHLRDEFKKVAKKGSRG-SFSGMNAIGVQEQLVPVIRRLITSLEN 128 (259)
Q Consensus 83 FLeeIk~eF~~~y~~~~~a-~a~a~~~~~~~~eF~pvLq~lM~sln~ 128 (259)
||++|+..|...|...... .++.. ......|+..+.+++..++.
T Consensus 91 LL~~v~~~Fv~~Y~~~L~~~~~~~~--~~~~~~Fd~~F~~~l~~~e~ 135 (185)
T 2fh5_A 91 LIDDVHRLFRDKYRTEIQQQSALSL--LNGTFDFQNDFLRLLREAEE 135 (185)
T ss_dssp HHHHHHHHHHHHTHHHHHSSSTHHH--HSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccc--ccccCchhHHHHHHHHHHHH
Confidence 9999999999999432111 11100 00023577777777777664
No 8
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=88.77 E-value=7.8 Score=31.63 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=62.1
Q ss_pred eeEEEEEE--cCCeeEEeeeCCC-CCH---HHHHHHHHhcCCCCCceEEEEeCCEEEEEEEeCCEEEEEEecCCCChhhH
Q 038670 7 TVHYCSVS--RGNRSLYVYSGGD-HEI---ENLATLCLERTPPFHKWYFETIGKRIYGFLIEDGYAYFMIADEGLGNRGA 80 (259)
Q Consensus 7 ~IlYA~VA--Rg~tILAEys~~~-gNf---~~ia~~iL~Klp~~~~k~s~~~g~y~FhyL~edgivYlcItd~s~~k~ia 80 (259)
||..-+|- +|.++|+.|-... ... ..+.+.+..++...+. -...++++.|-|....++.|+++++.+..--..
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~-~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDS-EIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCC-CEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCC-CEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 34344443 4779999975432 222 2223334444333232 356789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 038670 81 LQFLEHLRDEFKKVA 95 (259)
Q Consensus 81 F~FLeeIk~eF~~~y 95 (259)
+.||..+-+-+...+
T Consensus 91 le~L~~~ve~l~~yf 105 (153)
T 3tjz_C 91 MTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998877
No 9
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=88.33 E-value=7.6 Score=31.59 Aligned_cols=82 Identities=6% Similarity=-0.020 Sum_probs=56.0
Q ss_pred cCCeeEEee-eCCCCCHH-HHHHHHHhcCCCC--CceEEEEeCCEEEEEEEeCCEEEEEEecCCCChhhHHHHHHHHHHH
Q 038670 15 RGNRSLYVY-SGGDHEIE-NLATLCLERTPPF--HKWYFETIGKRIYGFLIEDGYAYFMIADEGLGNRGALQFLEHLRDE 90 (259)
Q Consensus 15 Rg~tILAEy-s~~~gNf~-~ia~~iL~Klp~~--~~k~s~~~g~y~FhyL~edgivYlcItd~s~~k~iaF~FLeeIk~e 90 (259)
+|.++|+.| ......+. .+.+.+.+++... ..--....+++.|-|...+++.|+|+++.+..--..+.||..+-+-
T Consensus 11 ~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vev 90 (158)
T 1w63_Q 11 QGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVEL 90 (158)
T ss_dssp SSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 466888876 33333322 2332222222211 1123567789999999999999999999999999999999999988
Q ss_pred HHHhhc
Q 038670 91 FKKVAK 96 (259)
Q Consensus 91 F~~~y~ 96 (259)
+...+.
T Consensus 91 l~~yf~ 96 (158)
T 1w63_Q 91 LDKYFG 96 (158)
T ss_dssp HHHHHS
T ss_pred HHHHHc
Confidence 887663
No 10
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=87.60 E-value=6 Score=31.43 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=55.8
Q ss_pred cCCeeEEeee-CCCCC----H-HHHHHHHHhcCCCCCceEEEEeCCEEEEEEEeCCEEEEEEecCCCChhhHHHHHHHHH
Q 038670 15 RGNRSLYVYS-GGDHE----I-ENLATLCLERTPPFHKWYFETIGKRIYGFLIEDGYAYFMIADEGLGNRGALQFLEHLR 88 (259)
Q Consensus 15 Rg~tILAEys-~~~gN----f-~~ia~~iL~Klp~~~~k~s~~~g~y~FhyL~edgivYlcItd~s~~k~iaF~FLeeIk 88 (259)
+|.++|+.|- ...+. + +.+.+.++.+ ++ ..--....+++.|-|...+++.|+|+++.+..--..+.||..+-
T Consensus 11 ~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~-~~-~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~v 88 (142)
T 2vgl_S 11 AGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVR-DA-KHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFV 88 (142)
T ss_dssp TSCEEEEEECSCCCHHHHHHHHHHHHHHHHTC-CT-TSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCChhhhHHHHHHHHHHHhcC-CC-CCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4667787763 22222 1 2233344432 11 12235677899999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 038670 89 DEFKKVAK 96 (259)
Q Consensus 89 ~eF~~~y~ 96 (259)
+-+..-+.
T Consensus 89 e~l~~yf~ 96 (142)
T 2vgl_S 89 EVLNEYFH 96 (142)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHc
Confidence 98887663
No 11
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=84.66 E-value=14 Score=34.67 Aligned_cols=81 Identities=9% Similarity=0.019 Sum_probs=56.2
Q ss_pred cCCeeEEeeeCCCCCHHHHHHHHHhcCCCC---CceEEEEeCCEEEEEEEeCCEEEEEEecCCCChhhHHHHHHHHHHHH
Q 038670 15 RGNRSLYVYSGGDHEIENLATLCLERTPPF---HKWYFETIGKRIYGFLIEDGYAYFMIADEGLGNRGALQFLEHLRDEF 91 (259)
Q Consensus 15 Rg~tILAEys~~~gNf~~ia~~iL~Klp~~---~~k~s~~~g~y~FhyL~edgivYlcItd~s~~k~iaF~FLeeIk~eF 91 (259)
+|.++|+.|-..... ...+......+-.. ..--....+++.|-|...+++.|+|+++.+..--..+.||..+.+-+
T Consensus 11 ~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl 89 (435)
T 2vgl_M 11 KGEVLISRVYRDDIG-RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVM 89 (435)
T ss_dssp TCCEEEEEECSSSCC-HHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCCC-hhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 466777776332222 22233332333211 12235678999999999999999999999999999999999999988
Q ss_pred HHhhc
Q 038670 92 KKVAK 96 (259)
Q Consensus 92 ~~~y~ 96 (259)
...+.
T Consensus 90 ~~yf~ 94 (435)
T 2vgl_M 90 AAYFG 94 (435)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 87664
No 12
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=82.57 E-value=6.2 Score=36.94 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=59.5
Q ss_pred eeEEEEEE-c-CCeeEEee-eC-CCC-CHHHHHHHHHhcCCCCCceEEEEeCCEEEEEEEeCCEEEEEEecCCCChhhHH
Q 038670 7 TVHYCSVS-R-GNRSLYVY-SG-GDH-EIENLATLCLERTPPFHKWYFETIGKRIYGFLIEDGYAYFMIADEGLGNRGAL 81 (259)
Q Consensus 7 ~IlYA~VA-R-g~tILAEy-s~-~~g-Nf~~ia~~iL~Klp~~~~k~s~~~g~y~FhyL~edgivYlcItd~s~~k~iaF 81 (259)
||...+|. + |.++|+.| .. ... -.+..-+.++.+......--....+++.|-|...+++.|+|+++.+..--..+
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~l 81 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVF 81 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHHH
T ss_pred ceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHH
Confidence 33344443 3 55666664 32 222 23344445554322111123567889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 038670 82 QFLEHLRDEFKKVAK 96 (259)
Q Consensus 82 ~FLeeIk~eF~~~y~ 96 (259)
.||..+.+-+...+.
T Consensus 82 e~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 82 SFLYKVVQVFSEYFK 96 (423)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998887663
No 13
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=50.94 E-value=1.5 Score=33.06 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=16.7
Q ss_pred CCchhHHHHHHHhhheeeeeec
Q 038670 235 SSPQCIQKKWWRQVGLFSSLML 256 (259)
Q Consensus 235 ~~~q~~~~~w~~~v~ivl~~d~ 256 (259)
..++-.+++|||++|+.+++-+
T Consensus 55 ~A~~l~rkmwwkn~K~~iii~~ 76 (91)
T 3hd7_A 55 SAAKLKRKYWWKNLKMMIILGV 76 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788999999997766543
No 14
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=46.12 E-value=33 Score=28.22 Aligned_cols=84 Identities=11% Similarity=0.105 Sum_probs=57.8
Q ss_pred HHHHHHhcCCCC----CceEE-EEeCCEEEEEEE---eCCEEEEEEecCCCChhhHHHHHHHHHHHHHHhhccCCCCCCC
Q 038670 33 LATLCLERTPPF----HKWYF-ETIGKRIYGFLI---EDGYAYFMIADEGLGNRGALQFLEHLRDEFKKVAKKGSRGSFS 104 (259)
Q Consensus 33 ia~~iL~Klp~~----~~k~s-~~~g~y~FhyL~---edgivYlcItd~s~~k~iaF~FLeeIk~eF~~~y~~~~~a~a~ 104 (259)
+-..+|+|+-+- -.|+| .-+++|-=.|-. ++|.+|+|.+..+.||-+|..-|.++++ ++.
T Consensus 50 i~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~-----~~~------- 117 (149)
T 2fz0_A 50 IMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE-----YES------- 117 (149)
T ss_dssp HHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT-----SSC-------
T ss_pred HHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc-----ccc-------
Confidence 445677877762 23343 335788877776 3689999999999999999999999986 211
Q ss_pred CccccccccccHHHHHHHHHhhhccccc
Q 038670 105 GMNAIGVQEQLVPVIRRLITSLENVSQS 132 (259)
Q Consensus 105 a~~~~~~~~eF~pvLq~lM~sln~~~~~ 132 (259)
...+.+...-+.++++.|-+++++
T Consensus 118 ----~~~D~~l~~~~~~ild~FH~ELls 141 (149)
T 2fz0_A 118 ----NATNELLSSHVGQILDSFHEELVE 141 (149)
T ss_dssp ----CCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHHh
Confidence 112455566667777777766643
No 15
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=45.18 E-value=95 Score=27.07 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=49.1
Q ss_pred ceEEEEeCCEEEEEEE-eCCEEEEEEecCCCCh----------------------hhHHHHHHHHHHHHHHhhccCCCCC
Q 038670 46 KWYFETIGKRIYGFLI-EDGYAYFMIADEGLGN----------------------RGALQFLEHLRDEFKKVAKKGSRGS 102 (259)
Q Consensus 46 ~k~s~~~g~y~FhyL~-edgivYlcItd~s~~k----------------------~iaF~FLeeIk~eF~~~y~~~~~a~ 102 (259)
+-..+..+.|..|+.. --|+-|++++|...+- ...=.||.+|.+.|...-- ..+
T Consensus 118 g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~Vm---kNP 194 (219)
T 3cue_A 118 GLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVM---KDP 194 (219)
T ss_dssp SCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHH---SCT
T ss_pred ceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHh---cCC
Confidence 3456778887766665 4699999999987622 3345788888877765321 123
Q ss_pred CCCccccccccccHHHHHHHHHhh
Q 038670 103 FSGMNAIGVQEQLVPVIRRLITSL 126 (259)
Q Consensus 103 a~a~~~~~~~~eF~pvLq~lM~sl 126 (259)
.|.+...=-+..|+..++++++.+
T Consensus 195 FY~~~~pI~S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 195 SYSMEMPIRSNLFDEKVKKMVENL 218 (219)
T ss_dssp TCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccccHHHHHHHHHHHHhc
Confidence 333210001467999999988765
No 16
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=44.07 E-value=1.6e+02 Score=25.55 Aligned_cols=88 Identities=11% Similarity=0.098 Sum_probs=57.2
Q ss_pred HHHhcCCCCC---ceEEEEeCCEEEEEEEe-CCEEEEEEecCCCChhhHHHHHHHHHHHHHHhhccCCCCCCCCcccccc
Q 038670 36 LCLERTPPFH---KWYFETIGKRIYGFLIE-DGYAYFMIADEGLGNRGALQFLEHLRDEFKKVAKKGSRGSFSGMNAIGV 111 (259)
Q Consensus 36 ~iL~Klp~~~---~k~s~~~g~y~FhyL~e-dgivYlcItd~s~~k~iaF~FLeeIk~eF~~~y~~~~~a~a~a~~~~~~ 111 (259)
.+-+++.|.+ +-.+++.+.|..|+..- -|+-|+.++|.. ....=.||.+|.+.|...- -..+.|.+...=-
T Consensus 120 ~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V---~kNPFY~~~~pI~ 194 (219)
T 2j3t_D 120 AIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFA---LKNPFYSLEMPIR 194 (219)
T ss_dssp HHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHH---TTCTTCCTTSCCC
T ss_pred HHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHh---ccCCCCCCCCccc
Confidence 3445666533 34577888887777765 689999999976 3334468888887665532 1123333211112
Q ss_pred ccccHHHHHHHHHhhhc
Q 038670 112 QEQLVPVIRRLITSLEN 128 (259)
Q Consensus 112 ~~eF~pvLq~lM~sln~ 128 (259)
+..|+..++++++.++.
T Consensus 195 s~~Fd~~v~~l~~~~~~ 211 (219)
T 2j3t_D 195 CELFDQNLKLALEVAEK 211 (219)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhhc
Confidence 57899999999998775
No 17
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=43.61 E-value=5.1 Score=23.02 Aligned_cols=12 Identities=17% Similarity=0.493 Sum_probs=9.0
Q ss_pred HHHHHHhhheee
Q 038670 241 QKKWWRQVGLFS 252 (259)
Q Consensus 241 ~~~w~~~v~ivl 252 (259)
+..||||+-.|-
T Consensus 1 k~~WkK~f~av~ 12 (22)
T 3kf9_B 1 KRRWKKNFIAVS 12 (26)
T ss_dssp CHHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 357999997663
No 18
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=41.10 E-value=1.3e+02 Score=23.69 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=64.8
Q ss_pred eEEEEEEcCCeeEEeee--CCCC-----CH----H---HHHHHHHhcCCC-CCc---eEEEEeCCEEEEEEE-eCCEEEE
Q 038670 8 VHYCSVSRGNRSLYVYS--GGDH-----EI----E---NLATLCLERTPP-FHK---WYFETIGKRIYGFLI-EDGYAYF 68 (259)
Q Consensus 8 IlYA~VARg~tILAEys--~~~g-----Nf----~---~ia~~iL~Klp~-~~~---k~s~~~g~y~FhyL~-edgivYl 68 (259)
...+.|.|.+.+|.+.. .... +. . --+..+++++.+ ..+ ..++..++|..|+.. -.|+-|+
T Consensus 7 ~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kfv 86 (142)
T 2j3w_A 7 FYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFI 86 (142)
T ss_dssp EEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEEE
T ss_pred EEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEEE
Confidence 34567778889998763 2211 11 0 011223333322 222 456666776655554 4689999
Q ss_pred EEecCCCChhhHHHHHHHHHHHHHHhhccCCCCCCCCccccccccccHHHHHHHHHhh
Q 038670 69 MIADEGLGNRGALQFLEHLRDEFKKVAKKGSRGSFSGMNAIGVQEQLVPVIRRLITSL 126 (259)
Q Consensus 69 cItd~s~~k~iaF~FLeeIk~eF~~~y~~~~~a~a~a~~~~~~~~eF~pvLq~lM~sl 126 (259)
.++|.. .....=.||.+|.+.|...-- .+.|.+...=-+..|+..++++++.+
T Consensus 87 l~~d~~-~~~~i~~~~~~iy~~Y~~~v~----NPfy~~~~pI~s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 87 MLHDVR-QEDGIKNFFTDVYDLYIKFAM----NPFYEPNSPIRSSAFDRKVQFLGKKH 139 (142)
T ss_dssp EEESSC-CHHHHHHHHHHHHHHHHHHHH----STTCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred EEeCCC-CcHHHHHHHHHHHHHHHHHhc----CCCCCCCCceecHHHHHHHHHHHHHh
Confidence 999873 233445788888877766331 23333211112467999999998764
No 19
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=36.93 E-value=1.6e+02 Score=23.41 Aligned_cols=115 Identities=12% Similarity=0.125 Sum_probs=68.1
Q ss_pred eEEEEEEcCCeeEEeee--CCC--C-CHHH----------HHHHHHhcCCCC---CceEEEEeCCEEEEEEEe-CCEEEE
Q 038670 8 VHYCSVSRGNRSLYVYS--GGD--H-EIEN----------LATLCLERTPPF---HKWYFETIGKRIYGFLIE-DGYAYF 68 (259)
Q Consensus 8 IlYA~VARg~tILAEys--~~~--g-Nf~~----------ia~~iL~Klp~~---~~k~s~~~g~y~FhyL~e-dgivYl 68 (259)
...+.|.|.+.+|.+.. ... + +.++ -+..+.+++.+. .+-.++..++|..|+..- .|+-|+
T Consensus 4 ~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFv 83 (145)
T 2j3t_C 4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVV 83 (145)
T ss_dssp EEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEE
T ss_pred EEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEE
Confidence 33455667778888653 211 1 1111 123345555553 345678888986666664 699999
Q ss_pred EEecCCCChhhHHHHHHHHH-HHHHHhhccCCCCCCCCccccccccccHHHHHHHHHhhh
Q 038670 69 MIADEGLGNRGALQFLEHLR-DEFKKVAKKGSRGSFSGMNAIGVQEQLVPVIRRLITSLE 127 (259)
Q Consensus 69 cItd~s~~k~iaF~FLeeIk-~eF~~~y~~~~~a~a~a~~~~~~~~eF~pvLq~lM~sln 127 (259)
.++|...+. .=.||.+|. +.|.. | .-..+.|.+...=-+..|+..++++++.+.
T Consensus 84 l~td~~~~~--i~~~l~~iy~~lYv~-~--v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~~ 138 (145)
T 2j3t_C 84 MNTDLGVGP--IRDVLHHIYSALYVE-F--VVKNPLCPLGQTVQSELFRSRLDSYVRSLP 138 (145)
T ss_dssp EEECTTCCC--CHHHHHHHHHTTHHH-H--TTTCTTSCTTSCCCCHHHHHHHHHHHTTST
T ss_pred EEecCCcch--HHHHHHHHHHHHHHH-H--HhcCCCCCCCCceecHHHHHHHHHHHHhCc
Confidence 999986443 336788887 45544 2 122333433111125789999999998755
No 20
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=33.13 E-value=1.5e+02 Score=24.01 Aligned_cols=90 Identities=11% Similarity=0.085 Sum_probs=54.0
Q ss_pred HHHHhcCCCC---CceEEEEeCCEEEEEEEe-CCEEEEEEecCCCChhhHHHHHHHHHH-HHHHhh-ccC-CCCCCCCcc
Q 038670 35 TLCLERTPPF---HKWYFETIGKRIYGFLIE-DGYAYFMIADEGLGNRGALQFLEHLRD-EFKKVA-KKG-SRGSFSGMN 107 (259)
Q Consensus 35 ~~iL~Klp~~---~~k~s~~~g~y~FhyL~e-dgivYlcItd~s~~k~iaF~FLeeIk~-eF~~~y-~~~-~~a~a~a~~ 107 (259)
..+.+|+.+. +.-..+..+.|..|+..- -|+-|++++|...+ ..=.||.+|.. .|...- ..- .....|.+.
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~ 129 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVKYVSNNLLSPYDFAENE 129 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSC
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 3455677664 355678888888887775 59999999997643 23357888886 665522 111 000022110
Q ss_pred --------ccccccccHHHHHHHHHhh
Q 038670 108 --------AIGVQEQLVPVIRRLITSL 126 (259)
Q Consensus 108 --------~~~~~~eF~pvLq~lM~sl 126 (259)
..=-+..|+..|+++++.+
T Consensus 130 ~~~~~~~~~pI~s~~Fd~~l~~~~~~~ 156 (159)
T 3cue_C 130 NEMRGQGTRKITNRNFISVLESFLAPM 156 (159)
T ss_dssp TTTTTSCCCCCCCHHHHHHHHHHTSCC
T ss_pred cccccccCcCcccHHHHHHHHHHHHhc
Confidence 0001467999998888653
No 21
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=32.55 E-value=4.1 Score=32.29 Aligned_cols=20 Identities=25% Similarity=0.690 Sum_probs=15.4
Q ss_pred CCchhHHHHHHHhhheeeee
Q 038670 235 SSPQCIQKKWWRQVGLFSSL 254 (259)
Q Consensus 235 ~~~q~~~~~w~~~v~ivl~~ 254 (259)
..++-.+++|||++++.+++
T Consensus 83 ~A~kl~rkmwwkn~K~~iii 102 (119)
T 2kog_A 83 SAAKLKRKYWWKNLKMMIIL 102 (119)
T ss_dssp HHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33677889999999876664
No 22
>4ftx_A Protein SLM4; EGO complex, EGO3, TOR signaling, protein binding; 2.10A {Saccharomyces cerevisiae} PDB: 3lgo_A 4fuw_A
Probab=32.39 E-value=1.3e+02 Score=25.27 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=41.1
Q ss_pred CceEEEEeC---CEEEEEEEeC-----------CEEEEEEecCCCChhhHHHHHHHHHHHHHHhh
Q 038670 45 HKWYFETIG---KRIYGFLIED-----------GYAYFMIADEGLGNRGALQFLEHLRDEFKKVA 95 (259)
Q Consensus 45 ~~k~s~~~g---~y~FhyL~ed-----------givYlcItd~s~~k~iaF~FLeeIk~eF~~~y 95 (259)
.+-+.|++. -+.|+|-+|| ++.-|-|+|.+||--+.--=++..-.+|...|
T Consensus 93 ~ScY~~~i~~~~trIYTYEiEDLHaCVAqIP~SDLLLLfIAd~~yPyGLLv~KmK~al~af~dly 157 (170)
T 4ftx_A 93 NSCYPVEIDSFKTKIYTYEMEDLHTCVAQIPNSDLLLLFIAEGSFPYGLLVIKIERAMRELTDLF 157 (170)
T ss_dssp SEEEEEEETTEEEEEEEEEETTEEEEEEECTTSSEEEEEEEETTSCHHHHHHHHHHHHGGGGGGT
T ss_pred ccceeEEeccceeEEEEEEhhhhHHHHhcCCCCCeEEEEeecCCCchHHHHHHHHHHHHHHHHHh
Confidence 445566665 4789999998 99999999999998887777777777887777
No 23
>2o5g_B CAM, smooth muscle myosin light chain kinase peptide; protein-peptide complex, metal binding protein; 1.08A {Gallus gallus}
Probab=30.93 E-value=8.7 Score=22.86 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=13.4
Q ss_pred HHHHHHHhhheeeeee
Q 038670 240 IQKKWWRQVGLFSSLM 255 (259)
Q Consensus 240 ~~~~w~~~v~ivl~~d 255 (259)
+|++|.|-+.-|++|-
T Consensus 2 ~rrkWqKtgnAv~Al~ 17 (26)
T 2o5g_B 2 ARRKWQKTGHAVRAIG 17 (26)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999999888763
No 24
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=24.21 E-value=35 Score=20.81 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=12.6
Q ss_pred chhHHHHHHHhhhee
Q 038670 237 PQCIQKKWWRQVGLF 251 (259)
Q Consensus 237 ~q~~~~~w~~~v~iv 251 (259)
=|+.++.|-||.|=+
T Consensus 4 w~kle~fW~khMwNf 18 (30)
T 2jxf_A 4 WQKLEVFWAKHMWNF 18 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 478999999999854
Done!