BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038672
         (148 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q53608|T2S1_STRAL Type-2 restriction enzyme SalI OS=Streptomyces albus G GN=salIR
           PE=4 SV=1
          Length = 315

 Score = 30.8 bits (68), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 56  RYGGRWICGLCTEAVKD--EITC----RSKKRENHMMISTDEALNRHMKFCEQFRSSSPP 109
           R   +W      +A +D  ++T     ++ +R  +M   T E L  H K     R S+ P
Sbjct: 19  RLYNQWFLDAAPKAYRDTRQLTIDEVEQAFQRTANMTSITPEVLKAHPKTLATLRMSTAP 78

Query: 110 ARPAADDLISAMKHILRRSLDSPRKSKSPP 139
             P A D +  + H  +  LD+  K K PP
Sbjct: 79  --PIARDRLVGLSHGSKSLLDTMEKGKLPP 106


>sp|Q61SK8|MEP1_CAEBR MOG interacting and ectopic P-granules protein 1 OS=Caenorhabditis
           briggsae GN=mep-1 PE=3 SV=2
          Length = 880

 Score = 30.0 bits (66), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 2   VPTTVVNETEVAAAAAMMTQSSNYKDQS-EVEFARCECCGLTEECTAAYVSRVKERY--G 58
           +P  +    +VAA    + ++   K++  +++ +RC  CG   E   A  +  +  +  G
Sbjct: 403 IPKNIETYKQVAAQLKPVWETLKRKNEPYKLKMSRCGVCGFQTESKLAMAAHKETLHFTG 462

Query: 59  GRWICGLCTEAVKDEITCRSKKRENHMMISTDE 91
            ++ C LC E   +E   +    E H++I+  E
Sbjct: 463 SKFQCTLCKETDTNEQRMKEHYFEAHLIIAKSE 495


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.126    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,360,275
Number of Sequences: 539616
Number of extensions: 1634528
Number of successful extensions: 4596
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4592
Number of HSP's gapped (non-prelim): 16
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)