Query 038672
Match_columns 148
No_of_seqs 107 out of 122
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 23:33:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lk0_A RNA-binding protein 5; 45.3 4.6 0.00016 23.3 0.1 10 58-67 3-12 (32)
2 4b2v_A S64; toxin, ICK; NMR {S 37.4 7.8 0.00027 23.1 0.2 11 57-67 15-25 (32)
3 1g9p_A Omega-atracotoxin-HV2A; 36.8 9.5 0.00032 24.4 0.5 11 37-47 16-26 (45)
4 2e72_A POGO transposable eleme 36.4 17 0.00058 23.7 1.7 15 86-100 21-35 (49)
5 3d00_A Tungsten formylmethanof 27.8 15 0.00051 28.6 0.4 24 31-68 161-186 (191)
6 1ej5_A WAsp, wiskott-aldrich s 23.2 1.1E+02 0.0038 22.1 4.3 24 45-75 44-67 (107)
7 2gvi_A Conserved hypothetical 22.5 5.2 0.00018 31.3 -3.1 31 33-70 172-203 (204)
8 2k1p_A Zinc finger RAN-binding 22.1 22 0.00074 20.5 0.3 10 58-67 4-13 (33)
9 3uk3_C Zinc finger protein 217 21.1 65 0.0022 17.8 2.3 35 34-68 5-40 (57)
10 2vrn_A Protease I, DR1199; cys 20.3 40 0.0014 24.3 1.4 25 46-70 94-119 (190)
No 1
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=45.33 E-value=4.6 Score=23.33 Aligned_cols=10 Identities=30% Similarity=1.049 Sum_probs=8.3
Q ss_pred CCccccchhh
Q 038672 58 GGRWICGLCT 67 (148)
Q Consensus 58 ~GrWvCGLCs 67 (148)
.|.|+|..|+
T Consensus 3 ~gDW~C~~C~ 12 (32)
T 2lk0_A 3 FEDWLCNKCC 12 (32)
T ss_dssp CSEEECTTTC
T ss_pred CCCCCcCcCc
Confidence 3899999885
No 2
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=37.43 E-value=7.8 Score=23.08 Aligned_cols=11 Identities=45% Similarity=1.229 Sum_probs=8.9
Q ss_pred cCCccccchhh
Q 038672 57 YGGRWICGLCT 67 (148)
Q Consensus 57 y~GrWvCGLCs 67 (148)
-.|.|-||-|-
T Consensus 15 kmgdwccgrci 25 (32)
T 4b2v_A 15 KMGDWCCGRCI 25 (32)
T ss_dssp TTCCCCSSEEE
T ss_pred HhcchhhhHHH
Confidence 36999999883
No 3
>1g9p_A Omega-atracotoxin-HV2A; cystine knot; NMR {Hadronyche versuta} SCOP: g.3.6.2 PDB: 1hp3_A
Probab=36.79 E-value=9.5 Score=24.44 Aligned_cols=11 Identities=45% Similarity=1.210 Sum_probs=9.7
Q ss_pred CccCCCccccH
Q 038672 37 ECCGLTEECTA 47 (148)
Q Consensus 37 eCCGltEECT~ 47 (148)
+|||||--|+.
T Consensus 16 dCC~lTP~Ck~ 26 (45)
T 1g9p_A 16 DCCELTPVCKR 26 (45)
T ss_dssp GSBTTCCEEET
T ss_pred CcccCCccccc
Confidence 79999999984
No 4
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.42 E-value=17 Score=23.69 Aligned_cols=15 Identities=40% Similarity=0.738 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHHHH
Q 038672 86 MISTDEALNRHMKFC 100 (148)
Q Consensus 86 ~i~~eEAl~~Hm~fC 100 (148)
....-++|+.||.+|
T Consensus 21 ~f~~~~sLr~Hmkyc 35 (49)
T 2e72_A 21 QFRVTEALRGHMCYC 35 (49)
T ss_dssp CCSSHHHHHHHHHHH
T ss_pred cccchHHHHhhhhhc
Confidence 356679999999998
No 5
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=27.80 E-value=15 Score=28.63 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=18.7
Q ss_pred hhceeeCccC--CCccccHHHHHHHHhhcCCccccchhhH
Q 038672 31 VEFARCECCG--LTEECTAAYVSRVKERYGGRWICGLCTE 68 (148)
Q Consensus 31 VE~akCeCCG--ltEECT~~YI~~VR~ry~GrWvCGLCsE 68 (148)
.+++.|+.|| +.|. |+.||--|.+
T Consensus 161 ~~~~~C~~CGE~~~~~--------------g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ--------------DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG--------------GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC--------------CCcCCccccC
Confidence 4678999999 3433 9999999874
No 6
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=23.23 E-value=1.1e+02 Score=22.07 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=16.4
Q ss_pred ccHHHHHHHHhhcCCccccchhhHHHHHHHH
Q 038672 45 CTAAYVSRVKERYGGRWICGLCTEAVKDEIT 75 (148)
Q Consensus 45 CT~~YI~~VR~ry~GrWvCGLCsEAVkeE~~ 75 (148)
-|..+|-.+=+..+|- ++|+.|+.
T Consensus 44 ~t~~fI~dfie~~~gl-------e~v~~e~~ 67 (107)
T 1ej5_A 44 ETSKLIYDFIEDQGGL-------EAVRQEMR 67 (107)
T ss_dssp HHHHHHHHHHHHTTHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHcccc-------chhhHhhh
Confidence 4667777777777764 67777764
No 7
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=22.46 E-value=5.2 Score=31.25 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=20.0
Q ss_pred ceeeCccCCCccccHHHHHHHHhh-cCCccccchhhHHH
Q 038672 33 FARCECCGLTEECTAAYVSRVKER-YGGRWICGLCTEAV 70 (148)
Q Consensus 33 ~akCeCCGltEECT~~YI~~VR~r-y~GrWvCGLCsEAV 70 (148)
++.|+.||=. +-.-|.+ ..|+.||--|.+.+
T Consensus 172 ~~~C~~CGE~-------~~~~~~~~~~g~~~C~~C~~~~ 203 (204)
T 2gvi_A 172 KVRCDVCGEY-------TYEADAKLLNGKPVCKPDYYGK 203 (204)
T ss_dssp EEECTTTCCE-------EEGGGCEEETTEEECHHHHHC-
T ss_pred ceECCCCCCc-------hhhcceeeeCCcEEChhhhccC
Confidence 6889999921 1112222 46999999998654
No 8
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=22.11 E-value=22 Score=20.53 Aligned_cols=10 Identities=30% Similarity=1.165 Sum_probs=8.0
Q ss_pred CCccccchhh
Q 038672 58 GGRWICGLCT 67 (148)
Q Consensus 58 ~GrWvCGLCs 67 (148)
.|.|+|--|+
T Consensus 4 ~gDW~C~~C~ 13 (33)
T 2k1p_A 4 ANDWQCKTCS 13 (33)
T ss_dssp SSSCBCSSSC
T ss_pred CCCcccCCCC
Confidence 4889998775
No 9
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=21.07 E-value=65 Score=17.84 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=24.2
Q ss_pred eeeCccCCCccccHHHHHHHHhhcCC-ccccchhhH
Q 038672 34 ARCECCGLTEECTAAYVSRVKERYGG-RWICGLCTE 68 (148)
Q Consensus 34 akCeCCGltEECT~~YI~~VR~ry~G-rWvCGLCsE 68 (148)
-+|.-||..-.-...+..-+|.--+. .|.|..|+.
T Consensus 5 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 40 (57)
T 3uk3_C 5 RECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEY 40 (57)
T ss_dssp CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSC
T ss_pred ccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcc
Confidence 46888888776666666666654433 488998864
No 10
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=20.34 E-value=40 Score=24.29 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=19.7
Q ss_pred cHHHHHHHHhhc-CCccccchhhHHH
Q 038672 46 TAAYVSRVKERY-GGRWICGLCTEAV 70 (148)
Q Consensus 46 T~~YI~~VR~ry-~GrWvCGLCsEAV 70 (148)
.+..++-+|+.| .|+||++.|.-+.
T Consensus 94 ~~~l~~~l~~~~~~gk~i~aiC~G~~ 119 (190)
T 2vrn_A 94 EEGAMKFVRDMYDAGKPIAAICHGPW 119 (190)
T ss_dssp CHHHHHHHHHHHHTTCCEEEC-CTTH
T ss_pred CHHHHHHHHHHHHcCCEEEEECHhHH
Confidence 577888888877 6999999998763
Done!