Query 038672
Match_columns 148
No_of_seqs 107 out of 122
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 23:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038672.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038672hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pd0a5 g.41.10.1 (A:216-300) 44.4 2.6 0.00019 27.3 0.4 29 33-67 13-42 (85)
2 d1e4va2 g.41.2.1 (A:122-156) M 41.8 2.8 0.0002 23.7 0.2 12 59-70 1-12 (35)
3 d1s3ga2 g.41.2.1 (A:126-160) M 41.2 2.2 0.00016 24.2 -0.3 13 59-71 1-13 (35)
4 d1akya2 g.41.2.1 (A:131-168) M 39.1 2.5 0.00019 24.3 -0.3 12 59-70 1-12 (38)
5 d1zina2 g.41.2.1 (A:126-160) M 34.8 3.8 0.00028 23.1 0.0 11 59-69 1-11 (35)
6 d2csha1 g.37.1.1 (A:8-60) Zinc 30.3 15 0.0011 20.7 2.2 36 34-70 4-40 (53)
7 d2ctda1 g.37.1.1 (A:8-60) Zinc 27.2 12 0.00085 23.2 1.3 13 90-102 41-53 (53)
8 d2f05a1 a.59.1.1 (A:1-85) Sin3 23.3 17 0.0012 23.0 1.7 14 47-60 11-24 (85)
9 d1s5qb_ a.59.1.1 (B:) Sin3A {M 22.3 18 0.0013 23.2 1.7 14 47-60 14-27 (89)
10 d1mmsa2 d.47.1.1 (A:8-70) Ribo 22.0 14 0.001 23.3 0.9 17 91-107 19-39 (63)
11 d2qtva5 g.41.10.1 (A:45-119) S 21.6 11 0.00079 24.0 0.4 10 58-67 31-40 (75)
12 d1dx8a_ g.41.5.1 (A:) Rubredox 20.9 11 0.00079 24.2 0.3 15 58-73 5-19 (70)
13 d1weva_ g.50.1.2 (A:) PHD fing 20.3 9.8 0.00071 23.7 -0.1 42 33-74 33-77 (88)
No 1
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=44.45 E-value=2.6 Score=27.28 Aligned_cols=29 Identities=28% Similarity=0.657 Sum_probs=16.6
Q ss_pred ceeeCccCCCccccHHHHHHHHhhcC-Cccccchhh
Q 038672 33 FARCECCGLTEECTAAYVSRVKERYG-GRWICGLCT 67 (148)
Q Consensus 33 ~akCeCCGltEECT~~YI~~VR~ry~-GrWvCGLCs 67 (148)
-++|.-|+=-=-. | ++=.+. ++|+|.||.
T Consensus 13 i~RC~~C~ayiNP---~---~~~~~~g~~w~C~~C~ 42 (85)
T d1pd0a5 13 IVRCRRCRSYMNP---F---VTFIEQGRRWRCNFCR 42 (85)
T ss_dssp CCBCSSSCCBCCT---T---CEEETTTTEEECTTTC
T ss_pred CccccCCcCEECC---c---eEEeCCCCEEECCCCC
Confidence 4789888732111 0 011234 569999996
No 2
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=41.79 E-value=2.8 Score=23.72 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=9.2
Q ss_pred CccccchhhHHH
Q 038672 59 GRWICGLCTEAV 70 (148)
Q Consensus 59 GrWvCGLCsEAV 70 (148)
|||+|.-|+.--
T Consensus 1 GRr~c~~cG~~Y 12 (35)
T d1e4va2 1 GRRVHAPSGRVY 12 (35)
T ss_dssp TEEEETTTTEEE
T ss_pred CccCCcCcCChh
Confidence 889998887543
No 3
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=41.20 E-value=2.2 Score=24.17 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=9.8
Q ss_pred CccccchhhHHHH
Q 038672 59 GRWICGLCTEAVK 71 (148)
Q Consensus 59 GrWvCGLCsEAVk 71 (148)
|||+|.-|++--.
T Consensus 1 GR~~C~~CG~~Yh 13 (35)
T d1s3ga2 1 GRRICKVCGTSYH 13 (35)
T ss_dssp SEEEETTTCCEEE
T ss_pred CccCCcCcCchhc
Confidence 8999988876433
No 4
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.10 E-value=2.5 Score=24.35 Aligned_cols=12 Identities=25% Similarity=0.277 Sum_probs=9.3
Q ss_pred CccccchhhHHH
Q 038672 59 GRWICGLCTEAV 70 (148)
Q Consensus 59 GrWvCGLCsEAV 70 (148)
|||+|.-|++--
T Consensus 1 GRr~C~~cG~~Y 12 (38)
T d1akya2 1 GRLIHPASGRSY 12 (38)
T ss_dssp TEEECTTTCCEE
T ss_pred CccCCcCccchh
Confidence 789998887643
No 5
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=34.83 E-value=3.8 Score=23.15 Aligned_cols=11 Identities=45% Similarity=0.975 Sum_probs=8.9
Q ss_pred CccccchhhHH
Q 038672 59 GRWICGLCTEA 69 (148)
Q Consensus 59 GrWvCGLCsEA 69 (148)
|||+|.-|+.-
T Consensus 1 GRr~C~~CG~~ 11 (35)
T d1zina2 1 GRRICRNCGAT 11 (35)
T ss_dssp TEEEETTTCCE
T ss_pred CccCCcCcCch
Confidence 88999888764
No 6
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.34 E-value=15 Score=20.75 Aligned_cols=36 Identities=22% Similarity=0.529 Sum_probs=27.1
Q ss_pred eeeCccCCCccccHHHHHHHHhhcCCc-cccchhhHHH
Q 038672 34 ARCECCGLTEECTAAYVSRVKERYGGR-WICGLCTEAV 70 (148)
Q Consensus 34 akCeCCGltEECT~~YI~~VR~ry~Gr-WvCGLCsEAV 70 (148)
-+|+ ||.+=-.-..+..-.|---+.+ +.|..|+.+-
T Consensus 4 y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F 40 (53)
T d2csha1 4 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF 40 (53)
T ss_dssp EECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEE
T ss_pred CCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEe
Confidence 3787 9998888888888877555544 8999997543
No 7
>d2ctda1 g.37.1.1 (A:8-60) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.20 E-value=12 Score=23.21 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhh
Q 038672 90 DEALNRHMKFCEQ 102 (148)
Q Consensus 90 eEAl~~Hm~fC~~ 102 (148)
-+-|+.||..|++
T Consensus 41 v~GLKKHMe~C~q 53 (53)
T d2ctda1 41 IEGLKKHMENCKQ 53 (53)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcC
Confidence 5789999999974
No 8
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.32 E-value=17 Score=22.99 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=11.9
Q ss_pred HHHHHHHHhhcCCc
Q 038672 47 AAYVSRVKERYGGR 60 (148)
Q Consensus 47 ~~YI~~VR~ry~Gr 60 (148)
-.|+.+||++|+++
T Consensus 11 ~~yl~kVK~rf~~~ 24 (85)
T d2f05a1 11 ISYVNKIKTRFLDH 24 (85)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHccC
Confidence 36999999999865
No 9
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.35 E-value=18 Score=23.15 Aligned_cols=14 Identities=36% Similarity=0.899 Sum_probs=12.0
Q ss_pred HHHHHHHHhhcCCc
Q 038672 47 AAYVSRVKERYGGR 60 (148)
Q Consensus 47 ~~YI~~VR~ry~Gr 60 (148)
-.||..||++|..+
T Consensus 14 ~~yl~kVK~~f~d~ 27 (89)
T d1s5qb_ 14 INYVNKIKNRFQGQ 27 (89)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHccC
Confidence 36999999999865
No 10
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=21.97 E-value=14 Score=23.26 Aligned_cols=17 Identities=41% Similarity=0.991 Sum_probs=12.4
Q ss_pred HHHHHH----HHHHhhhccCC
Q 038672 91 EALNRH----MKFCEQFRSSS 107 (148)
Q Consensus 91 EAl~~H----m~fC~~fn~~~ 107 (148)
-||..| |.||++||..+
T Consensus 19 paLG~~GiNi~~F~k~fN~~T 39 (63)
T d1mmsa2 19 PALGQHGVNIMEFCKRFNAET 39 (63)
T ss_dssp HHHHTTTCCHHHHHHHHHHHT
T ss_pred chhhhcCcCHHHHHHHHHHHh
Confidence 455554 89999999643
No 11
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.62 E-value=11 Score=23.97 Aligned_cols=10 Identities=30% Similarity=1.255 Sum_probs=8.2
Q ss_pred CCccccchhh
Q 038672 58 GGRWICGLCT 67 (148)
Q Consensus 58 ~GrWvCGLCs 67 (148)
+.+|+|-||.
T Consensus 31 ~~~W~C~~C~ 40 (75)
T d2qtva5 31 NSSWSCPICN 40 (75)
T ss_dssp TTEEECTTTC
T ss_pred CCEEEecccC
Confidence 4569999996
No 12
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=20.94 E-value=11 Score=24.20 Aligned_cols=15 Identities=20% Similarity=0.685 Sum_probs=11.2
Q ss_pred CCccccchhhHHHHHH
Q 038672 58 GGRWICGLCTEAVKDE 73 (148)
Q Consensus 58 ~GrWvCGLCsEAVkeE 73 (148)
.|||+|..|+ -|=||
T Consensus 5 ~~ky~C~~Cg-yiYDp 19 (70)
T d1dx8a_ 5 EGKYECEACG-YIYEP 19 (70)
T ss_dssp SSCEEETTTC-CEECT
T ss_pred CCeEEcCCCC-eEECc
Confidence 5899999997 45555
No 13
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.32 E-value=9.8 Score=23.75 Aligned_cols=42 Identities=19% Similarity=0.499 Sum_probs=22.7
Q ss_pred ceeeCccCC--CccccHH-HHHHHHhhcCCccccchhhHHHHHHH
Q 038672 33 FARCECCGL--TEECTAA-YVSRVKERYGGRWICGLCTEAVKDEI 74 (148)
Q Consensus 33 ~akCeCCGl--tEECT~~-YI~~VR~ry~GrWvCGLCsEAVkeE~ 74 (148)
-+-|+-|+. --.|-.. ........=.+.|+|-+|.+..++..
T Consensus 33 ~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~~~~ 77 (88)
T d1weva_ 33 LVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp EEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred EEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHhhhh
Confidence 355666643 2355221 11222223356899999988766544
Done!