BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038673
(548 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 113 EMPERDVVSWTELIVAYANNGDMESAGGLFN---ELPLKDKVAWTAMVTGYVQNAKPREA 169
E+ R +W L AY GD + A + EL + AW + Y + EA
Sbjct: 29 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 88
Query: 170 IEYFER 175
IEY+++
Sbjct: 89 IEYYQK 94
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 113 EMPERDVVSWTELIVAYANNGDMESAGGLFN---ELPLKDKVAWTAMVTGYVQNAKPREA 169
E+ R +W L AY GD + A + EL + AW + Y + EA
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122
Query: 170 IEYFER 175
IEY+++
Sbjct: 123 IEYYQK 128
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 121 SWTELIVAYANNGDMESAGGLFN---ELPLKDKVAWTAMVTGYVQNAKPREAIEYFER 175
+W L AY GD + A + EL + AW + Y + EAIEY+++
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
>pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|B Chain B, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|C Chain C, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|D Chain D, Carbonyl Reductase Complexed With Nadph And 2-Propanol
Length = 244
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Query: 183 TDYVTLV----GVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSI 238
+D V+L G+ C LG +W G GP++ +V +AL+ M
Sbjct: 42 SDLVSLAKECPGIEPVCVDLG-----DWDATEKALGGIGPVDLLVNNAALVIMQPFLEVT 96
Query: 239 DDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTF 291
+A+ + R+VF S M+ ++ +I MV T PN +T+
Sbjct: 97 KEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITY 149
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 115 PERDVVSWTELIVAYANNGDMESAGGLFN---ELPLKDKVAWTAMVTGYVQNAKPREAIE 171
P +W L AY GD + A + EL + AW + Y + ++AIE
Sbjct: 5 PGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIE 64
Query: 172 YFER 175
Y+++
Sbjct: 65 YYQK 68
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 113 EMPERDVVSWTELIVAYANNGDMESAGGLFN---ELPLKDKVAWTAMVTGYVQNAKPREA 169
E+ + +W L AY GD + A + EL + AW + Y + EA
Sbjct: 37 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 96
Query: 170 IEYFER 175
IEY+++
Sbjct: 97 IEYYQK 102
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 115 PERDVVSWTELIVAYANNGDMESAGGLFN---ELPLKDKVAWTAMVTGYVQNAKPREAIE 171
P +W L AY GD + A + EL + AW + Y + EAIE
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 172 YFER 175
Y+++
Sbjct: 65 YYQK 68
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 115 PERDVVSWTELIVAYANNGDMESAGGLFN---ELPLKDKVAWTAMVTGYVQNAKPREAIE 171
P +W L AY GD + A + EL + AW + Y + EAIE
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 172 YFER 175
Y+++
Sbjct: 65 YYQK 68
>pdb|3IYD|D Chain D, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
Length = 1413
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 90/231 (38%), Gaps = 49/231 (21%)
Query: 206 WVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAM 265
W+ + +G + +N + A+ M + C YRI G+K +F+ M GFA
Sbjct: 580 WMI-VPKGLPYSIVNQALGKKAISKMLNTC------YRIL-GLKPTVIFADQIMYTGFAY 631
Query: 266 HGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRA 325
R+ A++ + DMV E K ++ A + G+ + + Y ++D+ A
Sbjct: 632 AARSGASVGI-DDMVIPEKKHEIISEAEAEVAEIQEQFQS-GLVTAGERYNKVIDIWAAA 689
Query: 326 GCLEEALKMVEKMPVEPNGGVWGALLGACQ----IHRN-PEIAQIAANHLFELEPDKIGN 380
N V A++ Q I+R+ E Q++ N ++
Sbjct: 690 -----------------NDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIY--------- 723
Query: 381 YIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAG 431
+ A +G +++R+L M GL P S +E + FR G
Sbjct: 724 ------MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETP--ITANFREG 766
>pdb|3LU0|D Chain D, Molecular Model Of Escherichia Coli Core Rna Polymerase
pdb|4IGC|D Chain D, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|I Chain I, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 1407
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 90/231 (38%), Gaps = 49/231 (21%)
Query: 206 WVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAM 265
W+ + +G + +N + A+ M + C YRI G+K +F+ M GFA
Sbjct: 580 WMI-VPKGLPYSIVNQALGKKAISKMLNTC------YRIL-GLKPTVIFADQIMYTGFAY 631
Query: 266 HGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRA 325
R+ A++ + DMV E K ++ A + G+ + + Y ++D+ A
Sbjct: 632 AARSGASVGI-DDMVIPEKKHEIISEAEAEVAEIQEQFQS-GLVTAGERYNKVIDIWAAA 689
Query: 326 GCLEEALKMVEKMPVEPNGGVWGALLGACQ----IHRN-PEIAQIAANHLFELEPDKIGN 380
N V A++ Q I+R+ E Q++ N ++
Sbjct: 690 -----------------NDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIY--------- 723
Query: 381 YIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAG 431
+ A +G +++R+L M GL P S +E + FR G
Sbjct: 724 ------MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETP--ITANFREG 766
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 121 SWTELIVAYANNGDMESAGGLFN---ELPLKDKVAWTAMVTGYVQNAKPREAIEYFER 175
+W L AY GD + A + EL + AW + Y + EAIEY+++
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
>pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|B Chain B, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|C Chain C, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|D Chain D, R292d Mutant Of E. Coli Pyruvate Kinase
Length = 470
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 42 SMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC 101
+M+ EG VS F T D S+ + GFT+DL VGNT++ V
Sbjct: 74 TMKLEGGNDVSLKAGQTFTFTT---DKSVIGNSEMVAVTYEGFTTDLSVGNTVL---VDD 127
Query: 102 GFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGL 141
G +G E + ++I NNGD+ G+
Sbjct: 128 GLIGM---------EVTAIEGNKVICKVLNNGDLGENKGV 158
>pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|B Chain B, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|C Chain C, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|D Chain D, Pyruvate Kinase From E. Coli In The T-State
Length = 470
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 42 SMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC 101
+M+ EG VS F T D S+ + GFT+DL VGNT++ V
Sbjct: 74 TMKLEGGNDVSLKAGQTFTFTT---DKSVIGNSEMVAVTYEGFTTDLSVGNTVL---VDD 127
Query: 102 GFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGL 141
G +G E + ++I NNGD+ G+
Sbjct: 128 GLIGM---------EVTAIEGNKVICKVLNNGDLGENKGV 158
>pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|B Chain B, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|C Chain C, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|D Chain D, Structure R271l Mutant Of E. Coli Pyruvate Kinase
Length = 470
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 42 SMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC 101
+M+ EG VS F T D S+ + GFT+DL VGNT++ V
Sbjct: 74 TMKLEGGNDVSLKAGQTFTFTT---DKSVIGNSEMVAVTYEGFTTDLSVGNTVL---VDD 127
Query: 102 GFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGL 141
G +G E + ++I NNGD+ G+
Sbjct: 128 GLIGM---------EVTAIEGNKVICKVLNNGDLGENKGV 158
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 115 PERDVVSWTELIVAYANNGDMESAGGLFN---ELPLKDKVAWTAMVTGYVQNAKPREAIE 171
P +W L AY GD + A + EL + AW + Y + EAIE
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 172 YFER 175
Y+++
Sbjct: 65 YYQK 68
>pdb|1VQQ|A Chain A, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1VQQ|B Chain B, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1MWU|A Chain A, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|1MWU|B Chain B, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|4DKI|A Chain A, Structural Insights Into The Anti- Methicillin-Resistant
Staphylococcus Aureus (Mrsa) Activity Of Ceftobiprole
pdb|4DKI|B Chain B, Structural Insights Into The Anti- Methicillin-Resistant
Staphylococcus Aureus (Mrsa) Activity Of Ceftobiprole
Length = 646
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 426 HEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRILMTHSEKLA 485
+++ +G HP + G+LL + Y ++ +Y +S+EE ++ E L
Sbjct: 320 NDYGSGTAIHPQT-------GELLALVSTPSY--DVYPFMYGMSNEEYNKLTEDKKEPLL 370
Query: 486 LAFGLLTTSPGATVRIM 502
F + TTSPG+T +I+
Sbjct: 371 NKFQI-TTSPGSTQKIL 386
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,882,348
Number of Sequences: 62578
Number of extensions: 709895
Number of successful extensions: 1413
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1402
Number of HSP's gapped (non-prelim): 20
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)