BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038673
(548 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/561 (60%), Positives = 423/561 (75%), Gaps = 14/561 (2%)
Query: 1 MDSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFK 60
MD + R V E V+++NPFLWTA+IRGY ++G ++I++Y MR+E I PVSFT SAL K
Sbjct: 98 MDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLK 157
Query: 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVV 120
AC + D++LG+Q HAQT L GF +YVGNTMI MYVKC + C+RKVFDEMPERDV+
Sbjct: 158 ACGTMKDLNLGRQFHAQTFRLRGFCF-VYVGNTMIDMYVKCESIDCARKVFDEMPERDVI 216
Query: 121 SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180
SWTELI AYA G+ME A LF LP KD VAWTAMVTG+ QNAKP+EA+EYF+RM+ +G
Sbjct: 217 SWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSG 276
Query: 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240
+ D VT+ G ISACAQLG KYA+ +IA+ SG+ P ++VV+GSALIDMYSKCG++++
Sbjct: 277 IRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEE 336
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMV-KTETKPNGVTFIGVLTACS 299
A +F+ M +NVF+YSSMILG A HGRA A+ LF MV +TE KPN VTF+G L ACS
Sbjct: 337 AVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACS 396
Query: 300 HVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVW 347
H GL + +GV P+ DHY CMVDLLGR G L+EAL++++ M VEP+GGVW
Sbjct: 397 HSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVW 456
Query: 348 GALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407
GALLGAC+IH NPEIA+IAA HLFELEPD IGNYI+LSN+YASAG W V RVR+L+K
Sbjct: 457 GALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEK 516
Query: 408 GLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYD 467
GLKK P SW+ G +H+F G+L HP S +IQ L +L++RL GYQP+L SV YD
Sbjct: 517 GLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYD 576
Query: 468 VSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIV 527
VSD K+ IL+ H+EKLALAF LLTT+ +T+ IMKNLR+C DCH FM AS+V G+ I+
Sbjct: 577 VSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVII 636
Query: 528 VRDNMRFHHFQDGKCSCGNYW 548
+RDNMRFHHF+ G CSCG++W
Sbjct: 637 MRDNMRFHHFRSGDCSCGDFW 657
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/555 (40%), Positives = 347/555 (62%), Gaps = 18/555 (3%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
VF +K K+ W ++I G++ +G ++ L+ M E + T+ + AC ++ +
Sbjct: 188 VFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN 247
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
+ G+Q+ I +L + N M+ MY KCG + ++++FD M E+D V+WT ++
Sbjct: 248 LEFGRQV-CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLD 306
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQY-AGVETDYV 186
YA + D E+A + N +P KD VAW A+++ Y QN KP EA+ F +Q ++ + +
Sbjct: 307 GYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQI 366
Query: 187 TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFV 246
TLV +SACAQ+G ++ W+ + G N V SALI MYSKCG ++ + +F
Sbjct: 367 TLVSTLSACAQVGALELGRWIHSYIKKHGIR--MNFHVTSALIHMYSKCGDLEKSREVFN 424
Query: 247 GMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL--- 303
+++R+VF +S+MI G AMHG + A+ +F M + KPNGVTF V ACSH GL
Sbjct: 425 SVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDE 484
Query: 304 ---------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGAC 354
YG+ P HYAC+VD+LGR+G LE+A+K +E MP+ P+ VWGALLGAC
Sbjct: 485 AESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGAC 544
Query: 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPG 414
+IH N +A++A L ELEP G +++LSNIYA G W++VS +R+ +++TGLKK PG
Sbjct: 545 KIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPG 604
Query: 415 YSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEE-K 473
S +E D G+IHEF +GD HP S ++ L +++++L+++GY+P + VL + +EE K
Sbjct: 605 CSSIEID-GMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMK 663
Query: 474 KRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMR 533
++ L HSEKLA+ +GL++T +R++KNLR+C DCH SQ+ REI+VRD R
Sbjct: 664 EQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYR 723
Query: 534 FHHFQDGKCSCGNYW 548
FHHF++G+CSC ++W
Sbjct: 724 FHHFRNGQCSCNDFW 738
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/401 (26%), Positives = 188/401 (46%), Gaps = 85/401 (21%)
Query: 4 FPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREG-IGPVSFTLSALFKAC 62
+ R VF+++ N F W LIR Y SI + M E P +T L KA
Sbjct: 82 YARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAA 141
Query: 63 TEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSW 122
EV +SLGQ +H + SD++V N++I Y CG
Sbjct: 142 AEVSSLSLGQSLHGMAVK-SAVGSDVFVANSLIHCYFSCG-------------------- 180
Query: 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182
D++SA +F + KD V+W +M+ G+VQ P +A+E F++M+ V+
Sbjct: 181 -----------DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVK 229
Query: 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242
+VT+VGV+SACA++ +++ VC E + N+ + +A++DMY+KCGSI+DA
Sbjct: 230 ASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNV--NLTLANAMLDMYTKCGSIEDAK 287
Query: 243 RIFVGMKQRNVFSYSSMILGFAM-------------------------------HGRAHA 271
R+F M++++ ++++M+ G+A+ +G+ +
Sbjct: 288 RLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNE 347
Query: 272 AIQLFGDM-VKTETKPNGVTFIGVLTACSHVG-----------LKCYGVSPSTDHYACMV 319
A+ +F ++ ++ K N +T + L+AC+ VG +K +G+ + + ++
Sbjct: 348 ALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALI 407
Query: 320 DLLGRAGCLE---EALKMVEKMPVEPNGGVWGALLGACQIH 357
+ + G LE E VEK V VW A++G +H
Sbjct: 408 HMYSKCGDLEKSREVFNSVEKRDV----FVWSAMIGGLAMH 444
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 123/257 (47%), Gaps = 15/257 (5%)
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAI-EYFERMQYAGVETD 184
+ A ++ +E A +F+E+P + AW ++ Y P +I + + + + +
Sbjct: 71 MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130
Query: 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
T +I A A++ + + +A S G ++V V ++LI Y CG +D A ++
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVG--SDVFVANSLIHCYFSCGDLDSACKV 188
Query: 245 FVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304
F +K+++V S++SMI GF G A++LF M + K + VT +GVL+AC+ +
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNL 248
Query: 305 CYG-----------VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353
+G V+ + M+D+ + G +E+A ++ + M E + W +L
Sbjct: 249 EFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDG 307
Query: 354 CQIHRNPEIAQIAANHL 370
I + E A+ N +
Sbjct: 308 YAISEDYEAAREVLNSM 324
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 447 bits (1149), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/554 (40%), Positives = 340/554 (61%), Gaps = 17/554 (3%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
+F Q++ N F++ LIR + + Y M + I P + T L KA +E+
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
V +G+Q H+Q + G F +D+YV N+++ MY CGF+ + ++F +M RDVVSWT ++
Sbjct: 133 VLVGEQTHSQIVRFG-FQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVA 191
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187
Y G +E+A +F+E+P ++ W+ M+ GY +N +AI+ FE M+ GV +
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETV 251
Query: 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247
+V VIS+CA LG +++ E S N+++G+AL+DM+ +CG I+ A +F G
Sbjct: 252 MVSVISSCAHLGALEFGERAYEYVVKSHMTV--NLILGTALVDMFWRCGDIEKAIHVFEG 309
Query: 248 MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---- 303
+ + + S+SS+I G A+HG AH A+ F M+ P VTF VL+ACSH GL
Sbjct: 310 LPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKG 369
Query: 304 --------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQ 355
K +G+ P +HY C+VD+LGRAG L EA + KM V+PN + GALLGAC+
Sbjct: 370 LEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACK 429
Query: 356 IHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGY 415
I++N E+A+ N L +++P+ G Y++LSNIYA AG WD + +R ++K +KK PG+
Sbjct: 430 IYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGW 489
Query: 416 SWLEGDRGVIHEFRAGD-LTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKK 474
S +E D G I++F GD HP +I++ ++L +++ GY+ N +DV +EEK+
Sbjct: 490 SLIEID-GKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKE 548
Query: 475 RILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRF 534
+ HSEKLA+A+G++ T PG T+RI+KNLR+CEDCH S+V GRE++VRD RF
Sbjct: 549 SSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRF 608
Query: 535 HHFQDGKCSCGNYW 548
HHF++G CSC +YW
Sbjct: 609 HHFRNGVCSCRDYW 622
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/365 (20%), Positives = 153/365 (41%), Gaps = 57/365 (15%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R +F+++ ++N F W+ +I GY + +I L+ M+REG+ + ++ +C +
Sbjct: 203 REMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHL 262
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
+ G++ + + ++ T +L +G ++ M+ +CG + + VF+ +PE D +SW+ +
Sbjct: 263 GALEFGERAY-EYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSI 321
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
I A +G +A+ YF +M G
Sbjct: 322 IKGLAVHG-------------------------------HAHKAMHYFSQMISLGFIPRD 350
Query: 186 VTLVGVISACAQLGVIKYANWVCE-IAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
VT V+SAC+ G+++ + E + + G P + ++DM + G + +A
Sbjct: 351 VTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEP--RLEHYGCIVDMLGRAGKLAEAENF 408
Query: 245 FVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304
+ M + +LG + + G+M+ + KP + +L+
Sbjct: 409 ILKMHVKPNAPILGALLGACKIYKNTEVAERVGNML-IKVKPEHSGYYVLLS-------N 460
Query: 305 CYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP----VEPNGGVWGALLGACQIHRNP 360
Y + D + D++ K+V+K P +E +G + +G Q H P
Sbjct: 461 IYACAGQWDKIESLRDMMKE--------KLVKKPPGWSLIEIDGKINKFTMGDDQKH--P 510
Query: 361 EIAQI 365
E+ +I
Sbjct: 511 EMGKI 515
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 117/260 (45%), Gaps = 41/260 (15%)
Query: 138 AGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQ 197
A G+F+++ + + ++ + A+P +A ++ +M + + D +T +I A ++
Sbjct: 70 AYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSE 129
Query: 198 LGVI---------------------------KYANWVCEIAEGSGFGPI--NNVVVGSAL 228
+ + YAN A G FG + +VV +++
Sbjct: 130 MECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSM 189
Query: 229 IDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNG 288
+ Y KCG +++A +F M RN+F++S MI G+A + AI LF M + N
Sbjct: 190 VAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANE 249
Query: 289 VTFIGVLTACSHVGLKCYG-----------VSPSTDHYACMVDLLGRAGCLEEALKMVEK 337
+ V+++C+H+G +G ++ + +VD+ R G +E+A+ + E
Sbjct: 250 TVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEG 309
Query: 338 MPVEPNGGVWGALLGACQIH 357
+P E + W +++ +H
Sbjct: 310 LP-ETDSLSWSSIIKGLAVH 328
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/558 (39%), Positives = 332/558 (59%), Gaps = 17/558 (3%)
Query: 4 FPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT 63
+ ++VF+ + FLW +IRG+ + S+ LY M ++T +L KAC+
Sbjct: 67 YAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACS 126
Query: 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWT 123
+ QIHAQ LG + +D+Y N++I Y G + +FD +PE D VSW
Sbjct: 127 NLSAFEETTQIHAQITKLG-YENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWN 185
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183
+I Y G M+ A LF ++ K+ ++WT M++GYVQ +EA++ F MQ + VE
Sbjct: 186 SVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEP 245
Query: 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243
D V+L +SACAQLG ++ W+ + + V+G LIDMY+KCG +++A
Sbjct: 246 DNVSLANALSACAQLGALEQGKWIHSYLNKTRIRM--DSVLGCVLIDMYAKCGEMEEALE 303
Query: 244 IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL 303
+F +K+++V +++++I G+A HG AI F +M K KPN +TF VLTACS+ GL
Sbjct: 304 VFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGL 363
Query: 304 ------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL 351
+ Y + P+ +HY C+VDLLGRAG L+EA + +++MP++PN +WGALL
Sbjct: 364 VEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALL 423
Query: 352 GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411
AC+IH+N E+ + L ++P G Y+ +NI+A WD + RRL+K G+ K
Sbjct: 424 KACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAK 483
Query: 412 NPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYD-VSD 470
PG S + + G HEF AGD +HP +IQ + +L+ +GY P L +L D V D
Sbjct: 484 VPGCSTISLE-GTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDD 542
Query: 471 EEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRD 530
+E++ I+ HSEKLA+ +GL+ T PG +RIMKNLR+C+DCH S++ R+IV+RD
Sbjct: 543 DEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRD 602
Query: 531 NMRFHHFQDGKCSCGNYW 548
RFHHF+DGKCSCG+YW
Sbjct: 603 RTRFHHFRDGKCSCGDYW 620
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/556 (40%), Positives = 345/556 (62%), Gaps = 17/556 (3%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
+ +F++ N L A+ Y+ QG ++++ ++ M G+ P ++ + +C+++
Sbjct: 291 KRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL 350
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
++ G+ H +L GF S + N +I MY+KC + ++FD M + VV+W +
Sbjct: 351 RNILWGKSCHGY-VLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSI 409
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQ-YAGVETD 184
+ Y NG++++A F +P K+ V+W +++G VQ + EAIE F MQ GV D
Sbjct: 410 VAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNAD 469
Query: 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
VT++ + SAC LG + A W+ E +G +V +G+ L+DM+S+CG + A I
Sbjct: 470 GVTMMSIASACGHLGALDLAKWIYYYIEKNGIQL--DVRLGTTLVDMFSRCGDPESAMSI 527
Query: 245 FVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL- 303
F + R+V ++++ I AM G A AI+LF DM++ KP+GV F+G LTACSH GL
Sbjct: 528 FNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLV 587
Query: 304 -----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLG 352
K +GVSP HY CMVDLLGRAG LEEA++++E MP+EPN +W +LL
Sbjct: 588 QQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLA 647
Query: 353 ACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKN 412
AC++ N E+A AA + L P++ G+Y++LSN+YASAG W+D+++VR +K GL+K
Sbjct: 648 ACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKP 707
Query: 413 PGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEE 472
PG S ++ RG HEF +GD +HP I+ L ++ R G+ P+L +VL DV ++E
Sbjct: 708 PGTSSIQ-IRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKE 766
Query: 473 KKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNM 532
K +L HSEKLA+A+GL++++ G T+RI+KNLR+C DCH F AS+V REI++RDN
Sbjct: 767 KIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNN 826
Query: 533 RFHHFQDGKCSCGNYW 548
RFH+ + GKCSCG++W
Sbjct: 827 RFHYIRQGKCSCGDFW 842
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 154/312 (49%), Gaps = 41/312 (13%)
Query: 3 SFPRLVFEQVK-YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKA 61
SF + VFE + Y F++ +LIRGY G ++I L+ M GI P +T A
Sbjct: 84 SFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSA 143
Query: 62 CTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVS 121
C + G QIH + +G + DL+V N+++ Y +CG
Sbjct: 144 CAKSRAKGNGIQIHGLIVKMG-YAKDLFVQNSLVHFYAECG------------------- 183
Query: 122 WTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERM-QYAG 180
+++SA +F+E+ ++ V+WT+M+ GY + ++A++ F RM +
Sbjct: 184 ------------ELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEE 231
Query: 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240
V + VT+V VISACA+L ++ V SG +N+++V SAL+DMY KC +ID
Sbjct: 232 VTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGI-EVNDLMV-SALVDMYMKCNAIDV 289
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSH 300
A R+F N+ ++M + G A+ +F M+ + +P+ ++ + +++CS
Sbjct: 290 AKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349
Query: 301 V-----GLKCYG 307
+ G C+G
Sbjct: 350 LRNILWGKSCHG 361
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 120/255 (47%), Gaps = 36/255 (14%)
Query: 108 RKVFDEMPERDVVSWTELIVAYANNGDMES---AGGLF-NELPLKDKVAWTAMVTGYVQN 163
R + + + DV + T+L+ G ES A +F N + +++ GY +
Sbjct: 53 RSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASS 112
Query: 164 AKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGF------- 216
EAI F RM +G+ D T +SACA+ A+G+G
Sbjct: 113 GLCNEAILLFLRMMNSGISPDKYTFPFGLSACAK-----------SRAKGNGIQIHGLIV 161
Query: 217 --GPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQ 274
G ++ V ++L+ Y++CG +D A ++F M +RNV S++SMI G+A A A+
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 275 LFGDMVK-TETKPNGVTFIGVLTACSHV-----GLKCY------GVSPSTDHYACMVDLL 322
LF MV+ E PN VT + V++AC+ + G K Y G+ + + +VD+
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281
Query: 323 GRAGCLEEALKMVEK 337
+ ++ A ++ ++
Sbjct: 282 MKCNAIDVAKRLFDE 296
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/597 (38%), Positives = 341/597 (57%), Gaps = 58/597 (9%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R VF+++ +N + +IR Y+ G + + ++ +M + P +T + KAC+
Sbjct: 94 RKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCS 153
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
+ +G++IH +G +S L+VGN ++ MY KCGFL +R V DEM RDVVSW L
Sbjct: 154 GTIVIGRKIHGSATKVG-LSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSL 212
Query: 126 IVAYANNG----------DMES------AGGLFNELPL---------------------K 148
+V YA N +MES AG + + LP K
Sbjct: 213 VVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKK 272
Query: 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVC 208
V+W M+ Y++NA P EA+E + RM+ G E D V++ V+ AC + +
Sbjct: 273 SLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIH 332
Query: 209 EIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGR 268
E P N+++ +ALIDMY+KCG ++ A +F MK R+V S+++MI + GR
Sbjct: 333 GYIERKKLIP--NLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGR 390
Query: 269 AHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-----KC-------YGVSPSTDHYA 316
A+ LF + + P+ + F+ L ACSH GL C Y ++P +H A
Sbjct: 391 GCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLA 450
Query: 317 CMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376
CMVDLLGRAG ++EA + ++ M +EPN VWGALLGAC++H + +I +AA+ LF+L P+
Sbjct: 451 CMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPE 510
Query: 377 KIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHP 436
+ G Y++LSNIYA AG W++V+ +R ++K GLKKNPG S +E +R +IH F GD +HP
Sbjct: 511 QSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNR-IIHTFLVGDRSHP 569
Query: 437 NSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRILMTHSEKLALAFGLLTTS-- 494
S EI + L L+ +++ GY P+ S L+DV +E+K+ L HSEKLA+ F L+ T
Sbjct: 570 QSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEE 629
Query: 495 ---PGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFHHFQDGKCSCGNYW 548
T+RI KNLRIC DCH+ SQ+ REI++RD RFH F+ G CSCG+YW
Sbjct: 630 EEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 91/177 (51%), Gaps = 2/177 (1%)
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183
+L+ AYA+ D+ SA +F+E+P ++ + M+ YV N E ++ F M V
Sbjct: 79 KLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRP 138
Query: 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243
D+ T V+ AC+ G I + A G + + VG+ L+ MY KCG + +A
Sbjct: 139 DHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLS--STLFVGNGLVSMYGKCGFLSEARL 196
Query: 244 IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSH 300
+ M +R+V S++S+++G+A + R A+++ +M + + T +L A S+
Sbjct: 197 VLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSN 253
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 113/259 (43%), Gaps = 34/259 (13%)
Query: 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMV 280
N +G L+ Y+ + A ++F + +RNV + MI + +G +++FG M
Sbjct: 73 NSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMC 132
Query: 281 KTETKPNGVTFIGVLTACS-----HVGLKCYGVSPSTDHYAC------MVDLLGRAGCLE 329
+P+ TF VL ACS +G K +G + + +V + G+ G L
Sbjct: 133 GCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLS 192
Query: 330 EALKMVEKMPVEPNGGVWGAL-LGACQIHRNPEIAQIAANHLFELEPDKIGNY--IILSN 386
EA ++++M + W +L +G Q R + ++ E+E KI + + S
Sbjct: 193 EARLVLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCR----EMESVKISHDAGTMASL 247
Query: 387 IYA-SAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQAL 445
+ A S ++V V+ + G K ++ + G + N+ ++
Sbjct: 248 LPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIG------------VYMKNAMPVEAV- 294
Query: 446 GDLLDRLQADGYQPNLRSV 464
+L R++ADG++P+ S+
Sbjct: 295 -ELYSRMEADGFEPDAVSI 312
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust.
Identities = 231/570 (40%), Positives = 342/570 (60%), Gaps = 33/570 (5%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISL---YCSMRREGIGPVSFTLSALFKACTE 64
+F Q+ +N F W +IRG+ K I++ Y M E + P FT ++ KAC +
Sbjct: 81 IFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAK 140
Query: 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVF-DEMPERD----- 118
+ G+QIH L GF D +V + ++ MYV CGF+ +R +F + E+D
Sbjct: 141 TGKIQEGKQIHGLA-LKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMT 199
Query: 119 --------VVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAI 170
+V W +I Y GD ++A LF+++ + V+W M++GY N ++A+
Sbjct: 200 DRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAV 259
Query: 171 EYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALID 230
E F M+ + +YVTLV V+ A ++LG ++ W+ AE SG I++V+ GSALID
Sbjct: 260 EVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGI-RIDDVL-GSALID 317
Query: 231 MYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVT 290
MYSKCG I+ A +F + + NV ++S+MI GFA+HG+A AI F M + +P+ V
Sbjct: 318 MYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 377
Query: 291 FIGVLTACSHVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM 338
+I +LTACSH GL G+ P +HY CMVDLLGR+G L+EA + + M
Sbjct: 378 YINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNM 437
Query: 339 PVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVS 398
P++P+ +W ALLGAC++ N E+ + AN L ++ P G Y+ LSN+YAS G W +VS
Sbjct: 438 PIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVS 497
Query: 399 RVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQ 458
+R +K ++K+PG S ++ D GV+HEF D +HP + EI L ++ D+L+ GY+
Sbjct: 498 EMRLRMKEKDIRKDPGCSLIDID-GVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYR 556
Query: 459 PNLRSVLYDVSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGA 518
P VL ++ +E+K+ +L HSEK+A AFGL++TSPG +RI+KNLRICEDCH +
Sbjct: 557 PITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLI 616
Query: 519 SQVIGREIVVRDNMRFHHFQDGKCSCGNYW 548
S+V R+I VRD RFHHFQDG CSC +YW
Sbjct: 617 SKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 139/304 (45%), Gaps = 66/304 (21%)
Query: 117 RDVVSWTELIVAYANNG----DMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIE- 171
RD ++ E++ A + D++ A +FN++P ++ +W ++ G+ ++ + + I
Sbjct: 53 RDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAI 112
Query: 172 --YFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229
++E M VE + T V+ ACA+ G I+ + +A GFG + V S L+
Sbjct: 113 TLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFG--GDEFVMSNLV 170
Query: 230 DMYSKCGSIDDA----YR-----------------------------------------I 244
MY CG + DA Y+ +
Sbjct: 171 RMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARML 230
Query: 245 FVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG-- 302
F M+QR+V S+++MI G++++G A+++F +M K + +PN VT + VL A S +G
Sbjct: 231 FDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSL 290
Query: 303 -----LKCY----GVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353
L Y G+ + ++D+ + G +E+A+ + E++P E N W A++
Sbjct: 291 ELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRE-NVITWSAMING 349
Query: 354 CQIH 357
IH
Sbjct: 350 FAIH 353
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 114/244 (46%), Gaps = 35/244 (14%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R++F++++ ++ W +I GY L G KD++ ++ M++ I P TL ++ A + +
Sbjct: 228 RMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRL 287
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
+ LG+ +H G D +G+ +I MY KCG + + VF+ +P +V++W
Sbjct: 288 GSLELGEWLHLYA-EDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITW--- 343
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
+AM+ G+ + + +AI+ F +M+ AGV
Sbjct: 344 ----------------------------SAMINGFAIHGQAGDAIDCFCKMRQAGVRPSD 375
Query: 186 VTLVGVISACAQLGVIKYA-NWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
V + +++AC+ G+++ + ++ G P + ++D+ + G +D+A
Sbjct: 376 VAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEP--RIEHYGCMVDLLGRSGLLDEAEEF 433
Query: 245 FVGM 248
+ M
Sbjct: 434 ILNM 437
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/555 (38%), Positives = 335/555 (60%), Gaps = 22/555 (3%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
+F Q + FL+TA I + G + LY + I P FT S+L K+C+
Sbjct: 86 LFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS---- 141
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
G+ IH +L G D YV ++ +Y K G + ++KVFD MPER +VS T +I
Sbjct: 142 TKSGKLIHTH-VLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMIT 200
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETDYV 186
YA G++E+A LF+ + +D V+W M+ GY Q+ P +A+ F+++ G + D +
Sbjct: 201 CYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEI 260
Query: 187 TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFV 246
T+V +SAC+Q+G ++ W+ + S NV V + LIDMYSKCGS+++A +F
Sbjct: 261 TVVAALSACSQIGALETGRWIHVFVKSSRIRL--NVKVCTGLIDMYSKCGSLEEAVLVFN 318
Query: 247 GMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVK-TETKPNGVTFIGVLTACSHVGL-- 303
++++ ++++MI G+AMHG + A++LF +M T +P +TFIG L AC+H GL
Sbjct: 319 DTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVN 378
Query: 304 ----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353
+ YG+ P +HY C+V LLGRAG L+ A + ++ M ++ + +W ++LG+
Sbjct: 379 EGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGS 438
Query: 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNP 413
C++H + + + A +L L G Y++LSNIYAS G ++ V++VR L+K G+ K P
Sbjct: 439 CKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEP 498
Query: 414 GYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEK 473
G S +E + V HEFRAGD H S EI L + +R+++ GY PN +VL D+ + EK
Sbjct: 499 GISTIEIENKV-HEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEK 557
Query: 474 KRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMR 533
++ L HSE+LA+A+GL++T PG+ ++I KNLR+C DCH S++ GR+IV+RD R
Sbjct: 558 EQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNR 617
Query: 534 FHHFQDGKCSCGNYW 548
FHHF DG CSCG++W
Sbjct: 618 FHHFTDGSCSCGDFW 632
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 34/264 (12%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREG-IGPVSFTLSALFKACTE 64
R +F+ + ++ W +I GY G D++ L+ + EG P T+ A AC++
Sbjct: 212 RALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQ 271
Query: 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTE 124
+ + G+ IH + ++ V +I MY KCG L + VF++ P +D+V+W
Sbjct: 272 IGALETGRWIHV-FVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNA 330
Query: 125 LIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184
+I YA +G + A LFNE+ G++
Sbjct: 331 MIAGYAMHGYSQDALRLFNEM------------------------------QGITGLQPT 360
Query: 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
+T +G + ACA G++ + E + G +G + L+ + + G + AY
Sbjct: 361 DITFIGTLQACAHAGLVNEGIRIFE-SMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYET 419
Query: 245 FVGMK-QRNVFSYSSMILGFAMHG 267
M + +SS++ +HG
Sbjct: 420 IKNMNMDADSVLWSSVLGSCKLHG 443
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 120/267 (44%), Gaps = 38/267 (14%)
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187
AYA++G + + LF++ D +TA + N +A + ++ + + + T
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132
Query: 188 LVGVISACAQ--------------LGVIKY-ANWVCEIAEGSG----------FGPINNV 222
++ +C+ LG+ Y A + ++ G P ++
Sbjct: 133 FSSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSL 192
Query: 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMV-K 281
V +A+I Y+K G+++ A +F M +R++ S++ MI G+A HG + A+ LF ++ +
Sbjct: 193 VSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAE 252
Query: 282 TETKPNGVTFIGVLTACS-----------HVGLKCYGVSPSTDHYACMVDLLGRAGCLEE 330
+ KP+ +T + L+ACS HV +K + + ++D+ + G LEE
Sbjct: 253 GKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEE 312
Query: 331 ALKMVEKMPVEPNGGVWGALLGACQIH 357
A+ + P + W A++ +H
Sbjct: 313 AVLVFNDTP-RKDIVAWNAMIAGYAMH 338
Score = 38.9 bits (89), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
Query: 7 LVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRR-EGIGPVSFTLSALFKACTEV 65
LVF K+ W A+I GY + G+ +D++ L+ M+ G+ P T +AC
Sbjct: 315 LVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHA 374
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP-ERDVVSWTE 124
V+ G +I G + ++ + + G L + + M + D V W+
Sbjct: 375 GLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSS 434
Query: 125 LIVAYANNGD 134
++ + +GD
Sbjct: 435 VLGSCKLHGD 444
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/555 (37%), Positives = 323/555 (58%), Gaps = 47/555 (8%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R VFE + K+ + +I GY G +D++ + M + P SFTLS++ +E
Sbjct: 196 RRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEY 255
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
+DV G++IH ++ G SD+Y+G++++ MY K
Sbjct: 256 VDVIKGKEIHGY-VIRKGIDSDVYIGSSLVDMYAK------------------------- 289
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
+ +E + +F+ L +D ++W ++V GYVQN + EA+ F +M A V+
Sbjct: 290 ------SARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGA 343
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
V VI ACA L + + GFG +N+ + SAL+DMYSKCG+I A +IF
Sbjct: 344 VAFSSVIPACAHLATLHLGKQLHGYVLRGGFG--SNIFIASALVDMYSKCGNIKAARKIF 401
Query: 246 VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-- 303
M + S++++I+G A+HG H A+ LF +M + KPN V F+ VLTACSHVGL
Sbjct: 402 DRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVD 461
Query: 304 ----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353
K YG++ +HYA + DLLGRAG LEEA + KM VEP G VW LL +
Sbjct: 462 EAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSS 521
Query: 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNP 413
C +H+N E+A+ A +F ++ + +G Y+++ N+YAS G W +++++R ++ GL+K P
Sbjct: 522 CSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKP 581
Query: 414 GYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEK 473
SW+E + H F +GD +HP+ +I + L ++++++ +GY + VL+DV +E K
Sbjct: 582 ACSWIEM-KNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHK 640
Query: 474 KRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMR 533
+ +L HSE+LA+AFG++ T PG T+R+ KN+RIC DCH+ + S++ REI+VRDN R
Sbjct: 641 RELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSR 700
Query: 534 FHHFQDGKCSCGNYW 548
FHHF G CSCG+YW
Sbjct: 701 FHHFNRGNCSCGDYW 715
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 181/371 (48%), Gaps = 32/371 (8%)
Query: 9 FEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDV 68
F+ +K W ++IR + Q +++ + MR G P ++ K+CT ++D+
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
Query: 69 SLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRK-----VFDEMPERDVVSWT 123
G+ +H + L G DLY GN ++ MY K LG K VFDEMP+R S
Sbjct: 122 RFGESVHGFIVRL-GMDCDLYTGNALMNMYAK--LLGMGSKISVGNVFDEMPQRTSNSGD 178
Query: 124 ELIVAYA--NNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV 181
E + A ++S +F +P KD V++ ++ GY Q+ +A+ M +
Sbjct: 179 EDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDL 238
Query: 182 ETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGF----GPINNVVVGSALIDMYSKCGS 237
+ D TL V+ ++ Y + V + E G+ G ++V +GS+L+DMY+K
Sbjct: 239 KPDSFTLSSVLPIFSE-----YVD-VIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSAR 292
Query: 238 IDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297
I+D+ R+F + R+ S++S++ G+ +GR + A++LF MV + KP V F V+ A
Sbjct: 293 IEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPA 352
Query: 298 CSHVG-------LKCY----GVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGV 346
C+H+ L Y G + + +VD+ + G ++ A K+ ++M V
Sbjct: 353 CAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS- 411
Query: 347 WGALLGACQIH 357
W A++ +H
Sbjct: 412 WTAIIMGHALH 422
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/273 (19%), Positives = 114/273 (41%), Gaps = 46/273 (16%)
Query: 125 LIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184
+I Y N + A LF L +AW +++ + + +A+ F M+ +G D
Sbjct: 45 VISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPD 104
Query: 185 YVTLVGVISACAQLGVIKYANWV----------CEIAEGSGF--------GPINNVVVGS 226
+ V+ +C + +++ V C++ G+ G + + VG+
Sbjct: 105 HNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGN 164
Query: 227 ALIDMYSKCGS----------------IDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAH 270
+M + + ID R+F M +++V SY+++I G+A G
Sbjct: 165 VFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYE 224
Query: 271 AAIQLFGDMVKTETKPNGVTFIGVLTACSHV-----GLKCYGV----SPSTDHY--ACMV 319
A+++ +M T+ KP+ T VL S G + +G +D Y + +V
Sbjct: 225 DALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLV 284
Query: 320 DLLGRAGCLEEALKMVEKMPVEPNGGVWGALLG 352
D+ ++ +E++ ++ ++ +G W +L+
Sbjct: 285 DMYAKSARIEDSERVFSRLYCR-DGISWNSLVA 316
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/564 (37%), Positives = 325/564 (57%), Gaps = 22/564 (3%)
Query: 3 SFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKAC 62
++ R VF+++ +++ W +I Y G + ++ L+ M+ + P L + AC
Sbjct: 163 NYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSAC 222
Query: 63 TEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSW 122
++ + I+ + ++ D ++ ++ MY G + +R+ F +M R++
Sbjct: 223 GRTGNMRYNRAIY-EFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVS 281
Query: 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182
T ++ Y+ G ++ A +F++ KD V WT M++ YV++ P+EA+ FE M +G++
Sbjct: 282 TAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIK 341
Query: 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242
D V++ VISACA LG++ A WV +G + + + +ALI+MY+KCG +D
Sbjct: 342 PDVVSMFSVISACANLGILDKAKWVHSCIHVNGLE--SELSINNALINMYAKCGGLDATR 399
Query: 243 RIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302
+F M +RNV S+SSMI +MHG A A+ LF M + +PN VTF+GVL CSH G
Sbjct: 400 DVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSG 459
Query: 303 L------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGAL 350
L Y ++P +HY CMVDL GRA L EAL+++E MPV N +WG+L
Sbjct: 460 LVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSL 519
Query: 351 LGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410
+ AC+IH E+ + AA + ELEPD G +++SNIYA W+DV +RR+++ +
Sbjct: 520 MSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVF 579
Query: 411 KNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSD 470
K G S ++ + G HEF GD H S EI L +++ +L+ GY P+ SVL DV +
Sbjct: 580 KEKGLSRIDQN-GKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEE 638
Query: 471 EEKKRILMTHSEKLALAFGLLTTSPG------ATVRIMKNLRICEDCHLFMCGASQVIGR 524
EEKK +++ HSEKLAL FGL+ +RI+KNLR+CEDCHLF S+V R
Sbjct: 639 EEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYER 698
Query: 525 EIVVRDNMRFHHFQDGKCSCGNYW 548
EI+VRD RFH +++G CSC +YW
Sbjct: 699 EIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 158/357 (44%), Gaps = 28/357 (7%)
Query: 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIH 75
NPFL R + +I Y +R G F+ + KA ++V + G ++H
Sbjct: 80 NPFL-----RDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELH 134
Query: 76 AQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDM 135
+ D +V + MY CG + +R VFDEM RDVV+W +I Y G +
Sbjct: 135 GVAFKIATLC-DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLV 193
Query: 136 ESAGGLFNELP----LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGV 191
+ A LF E+ + D++ +V+ + R +E + V D L +
Sbjct: 194 DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTAL 253
Query: 192 ISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR 251
++ A G + A E + N+ V +A++ YSKCG +DDA IF +++
Sbjct: 254 VTMYAGAGCMDMAR------EFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKK 307
Query: 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG--------- 302
++ +++MI + A+++F +M + KP+ V+ V++AC+++G
Sbjct: 308 DLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVH 367
Query: 303 --LKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIH 357
+ G+ ++++ + G L+ + EKMP N W +++ A +H
Sbjct: 368 SCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMH 423
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/556 (38%), Positives = 334/556 (60%), Gaps = 20/556 (3%)
Query: 9 FEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGI-GPVSFTLSALFKACTEVLD 67
FEQ+ ++ W ++I G+ +G+ ++ ++ M R+ + P FTL+++ AC +
Sbjct: 235 FEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEK 294
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERD--VVSWTEL 125
+ +G+QIH+ I+ GF V N +I MY +CG + +R++ ++ +D + +T L
Sbjct: 295 LCIGKQIHSH-IVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTAL 353
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
+ Y GDM A +F L +D VAWTAM+ GY Q+ EAI F M G +
Sbjct: 354 LDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNS 413
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
TL ++S + L + + + A SG I +V V +ALI MY+K G+I A R F
Sbjct: 414 YTLAAMLSVASSLASLSHGKQIHGSAVKSG--EIYSVSVSNALITMYAKAGNITSASRAF 471
Query: 246 VGMK-QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304
++ +R+ S++SMI+ A HG A A++LF M+ +P+ +T++GV +AC+H GL
Sbjct: 472 DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLV 531
Query: 305 CYG------------VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLG 352
G + P+ HYACMVDL GRAG L+EA + +EKMP+EP+ WG+LL
Sbjct: 532 NQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLS 591
Query: 353 ACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKN 412
AC++H+N ++ ++AA L LEP+ G Y L+N+Y++ G W++ +++R+ +K +KK
Sbjct: 592 ACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKE 651
Query: 413 PGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEE 472
G+SW+E V H F D THP EI + + D ++ GY P+ SVL+D+ +E
Sbjct: 652 QGFSWIEVKHKV-HVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEV 710
Query: 473 KKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNM 532
K++IL HSEKLA+AFGL++T T+RIMKNLR+C DCH + S+++GREI+VRD
Sbjct: 711 KEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTT 770
Query: 533 RFHHFQDGKCSCGNYW 548
RFHHF+DG CSC +YW
Sbjct: 771 RFHHFKDGFCSCRDYW 786
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/417 (27%), Positives = 195/417 (46%), Gaps = 50/417 (11%)
Query: 9 FEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDV 68
F+Q+ ++ WT +I GY G +I + M +EGI P FTL+ + + +
Sbjct: 103 FDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCM 162
Query: 69 SLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVA 128
G+++H+ + LG ++ V N+++ MY KCG ++ VFD M RD+ SW +I
Sbjct: 163 ETGKKVHSFIVKLG-LRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIAL 221
Query: 129 YANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERM-QYAGVETDYVT 187
+ G M+ A F ++ +D V W +M++G+ Q A++ F +M + + + D T
Sbjct: 222 HMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFT 281
Query: 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR---- 243
L V+SACA L + + +GF I+ +V+ +ALI MYS+CG ++ A R
Sbjct: 282 LASVLSACANLEKLCIGKQIHSHIVTTGF-DISGIVL-NALISMYSRCGGVETARRLIEQ 339
Query: 244 -----------------------------IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQ 274
IFV +K R+V ++++MI+G+ HG AI
Sbjct: 340 RGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAIN 399
Query: 275 LFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG------VSPSTDHYA-----CMVDLLG 323
LF MV +PN T +L+ S + +G S + Y+ ++ +
Sbjct: 400 LFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYA 459
Query: 324 RAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIA-QIAANHLFE-LEPDKI 378
+AG + A + + + E + W +++ A H + E A ++ L E L PD I
Sbjct: 460 KAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHI 516
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 155/340 (45%), Gaps = 54/340 (15%)
Query: 49 GPVSFTLSALFKACTEVLDVSL--------GQQIHAQTILLGGFTSDLYVGNTMIGMYVK 100
PV +LS L + CT +L S+ Q +H + ++ G +Y+ N ++ +Y K
Sbjct: 3 APVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCR-VIKSGLMFSVYLMNNLMNVYSK 61
Query: 101 CGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGY 160
G+ +RK+FDEMP R SW ++ AY+ GDM+S F++LP +D V+WT M+ GY
Sbjct: 62 TGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGY 121
Query: 161 VQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPIN 220
+ +AI M G+E TL V+++ A ++ V G
Sbjct: 122 KNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFI--VKLGLRG 179
Query: 221 NVVVGSALIDMYSKC-------------------------------GSIDDAYRIFVGMK 249
NV V ++L++MY+KC G +D A F M
Sbjct: 180 NVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMA 239
Query: 250 QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTE-TKPNGVTFIGVLTACSHVGLKCYG- 307
+R++ +++SMI GF G A+ +F M++ P+ T VL+AC+++ C G
Sbjct: 240 ERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGK 299
Query: 308 ------VSPSTDHYA----CMVDLLGRAGCLEEALKMVEK 337
V+ D ++ + R G +E A +++E+
Sbjct: 300 QIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQ 339
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 122/261 (46%), Gaps = 35/261 (13%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
+F +K ++ WTA+I GY G ++I+L+ SM G P S+TL+A+ + +
Sbjct: 369 IFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLAS 428
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP-ERDVVSWTELI 126
+S G+QIH + G S + V N +I MY K G + + + FD + ERD VSWT +I
Sbjct: 429 LSHGKQIHGSAVKSGEIYS-VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMI 487
Query: 127 VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYV 186
+A A +G E EA+E FE M G+ D++
Sbjct: 488 IALAQHGHAE-------------------------------EALELFETMLMEGLRPDHI 516
Query: 187 TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFV 246
T VGV SAC G++ ++ + I + + ++D++ + G + +A
Sbjct: 517 TYVGVFSACTHAGLVNQGRQYFDMMKDVD-KIIPTLSHYACMVDLFGRAGLLQEAQEFIE 575
Query: 247 GMK-QRNVFSYSSMILGFAMH 266
M + +V ++ S++ +H
Sbjct: 576 KMPIEPDVVTWGSLLSACRVH 596
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/561 (41%), Positives = 325/561 (57%), Gaps = 53/561 (9%)
Query: 4 FPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT 63
+ R VF+++ FLW L +GY+ +S+ LY MR G+ P FT + KA +
Sbjct: 61 YARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAIS 120
Query: 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWT 123
++ D S G +HA VK GF GC V T
Sbjct: 121 QLGDFSCGFALHAHV--------------------VKYGF-GCLGIV-----------AT 148
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183
EL++ Y G++ SA LF + +KD VAW A + VQ A+EYF +M V+
Sbjct: 149 ELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQF 208
Query: 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPIN-NVVVGSALIDMYSKCGSIDDAY 242
D T+V ++SAC QLG ++ EI + + I+ N++V +A +DM+ KCG+ + A
Sbjct: 209 DSFTVVSMLSACGQLGSLEIGE---EIYDRARKEEIDCNIIVENARLDMHLKCGNTEAAR 265
Query: 243 RIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302
+F MKQRNV S+S+MI+G+AM+G + A+ LF M +PN VTF+GVL+ACSH G
Sbjct: 266 VLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAG 325
Query: 303 LKCYG--------------VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWG 348
L G + P +HYACMVDLLGR+G LEEA + ++KMPVEP+ G+WG
Sbjct: 326 LVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWG 385
Query: 349 ALLGACQIHRNPEIAQIAANHLFELEPDKIGNY-IILSNIYASAGMWDDVSRVRRLLKMT 407
ALLGAC +HR+ + Q A+ L E PD IG+Y ++LSNIYA+AG WD V +VR ++
Sbjct: 386 ALLGACAVHRDMILGQKVADVLVETAPD-IGSYHVLLSNIYAAAGKWDCVDKVRSKMRKL 444
Query: 408 GLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYD 467
G KK YS +E + G IH F GD +HP S I + L ++L +++ GY P+ SV +D
Sbjct: 445 GTKKVAAYSSVEFE-GKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHD 503
Query: 468 VSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIV 527
V EEK+ L HSEKLA+AFGL+ PG +R+MKNLR C+DCH F S + EI+
Sbjct: 504 VEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEII 563
Query: 528 VRDNMRFHHFQDGKCSCGNYW 548
+RD RFHHF++G CSC +W
Sbjct: 564 MRDKNRFHHFRNGVCSCKEFW 584
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 116/250 (46%), Gaps = 39/250 (15%)
Query: 3 SFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKAC 62
S +FE ++ K+ W A + + G+ ++ + M + + SFT+ ++ AC
Sbjct: 161 SSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSAC 220
Query: 63 TEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSW 122
++ + +G++I+ + ++ V N + M++KCG +R +F+EM +R+VVSW
Sbjct: 221 GQLGSLEIGEEIYDRA-RKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSW 279
Query: 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182
+ +IV YA NGD REA+ F MQ G+
Sbjct: 280 STMIVGYAMNGD-------------------------------SREALTLFTTMQNEGLR 308
Query: 183 TDYVTLVGVISACAQLGVI----KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSI 238
+YVT +GV+SAC+ G++ +Y + + + + P + ++D+ + G +
Sbjct: 309 PNYVTFLGVLSACSHAGLVNEGKRYFSLMVQ-SNDKNLEPRKEHY--ACMVDLLGRSGLL 365
Query: 239 DDAYRIFVGM 248
++AY M
Sbjct: 366 EEAYEFIKKM 375
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 12/185 (6%)
Query: 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182
T+L+ GDM A +F+E+ W + GYV+N P E++ +++M+ GV
Sbjct: 47 TQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVR 106
Query: 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGS-----GFGPINNVVVGSALIDMYSKCGS 237
D T V+ A +QLG ++ C A + GFG + +V + L+ MY K G
Sbjct: 107 PDEFTYPFVVKAISQLG-----DFSCGFALHAHVVKYGFGCLG--IVATELVMMYMKFGE 159
Query: 238 IDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297
+ A +F M+ +++ ++++ + G + A++ F M + + T + +L+A
Sbjct: 160 LSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSA 219
Query: 298 CSHVG 302
C +G
Sbjct: 220 CGQLG 224
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/561 (39%), Positives = 323/561 (57%), Gaps = 49/561 (8%)
Query: 4 FPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT 63
+ R VF++ + + ++W AL R L GH ++ + LY M R G+ FT + + KAC
Sbjct: 130 YARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACV 189
Query: 64 ----EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDV 119
V + G++IHA + G++S +Y+ T++ MY + G + + VF MP R+V
Sbjct: 190 ASECTVNHLMKGKEIHAH-LTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNV 248
Query: 120 VSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYA 179
VSW+ +I YA NG A F E+ + K ++ P
Sbjct: 249 VSWSAMIACYAKNGKAFEALRTFREMMRETK------------DSSP------------- 283
Query: 180 GVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSID 239
+ VT+V V+ ACA L ++ + G I V+ SAL+ MY +CG ++
Sbjct: 284 ----NSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVI--SALVTMYGRCGKLE 337
Query: 240 DAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS 299
R+F M R+V S++S+I + +HG AIQ+F +M+ P VTF+ VL ACS
Sbjct: 338 VGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACS 397
Query: 300 HVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVW 347
H GL + +G+ P +HYACMVDLLGRA L+EA KMV+ M EP VW
Sbjct: 398 HEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVW 457
Query: 348 GALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407
G+LLG+C+IH N E+A+ A+ LF LEP GNY++L++IYA A MWD+V RV++LL+
Sbjct: 458 GSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHR 517
Query: 408 GLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYD 467
GL+K PG W+E R ++ F + D +P +I L L + ++ GY P + VLY+
Sbjct: 518 GLQKLPGRCWMEVRRK-MYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYE 576
Query: 468 VSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIV 527
+ EEK+RI++ HSEKLALAFGL+ TS G +RI KNLR+CEDCHLF S+ + +EI+
Sbjct: 577 LETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEIL 636
Query: 528 VRDNMRFHHFQDGKCSCGNYW 548
VRD RFH F++G CSCG+YW
Sbjct: 637 VRDVNRFHRFKNGVCSCGDYW 657
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 218/555 (39%), Positives = 324/555 (58%), Gaps = 48/555 (8%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R +F+ + +N W ++I Y+ + K+++ ++ M EG+ P ++ AC ++
Sbjct: 291 RQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADL 350
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
D+ G+ IH ++ LG ++ V N++I MY KC
Sbjct: 351 GDLERGRFIHKLSVELG-LDRNVSVVNSLISMYCKCK----------------------- 386
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
++++A +F +L + V+W AM+ G+ QN +P +A+ YF +M+ V+ D
Sbjct: 387 --------EVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDT 438
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
T V VI+A A+L + +A W+ + S NV V +AL+DMY+KCG+I A IF
Sbjct: 439 FTYVSVITAIAELSITHHAKWIHGVVMRSCLD--KNVFVTTALVDMYAKCGAIMIARLIF 496
Query: 246 VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSH----- 300
M +R+V ++++MI G+ HG AA++LF +M K KPNGVTF+ V++ACSH
Sbjct: 497 DMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVE 556
Query: 301 VGLKC-------YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353
GLKC Y + S DHY MVDLLGRAG L EA + +MPV+P V+GA+LGA
Sbjct: 557 AGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGA 616
Query: 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNP 413
CQIH+N A+ AA LFEL PD G +++L+NIY +A MW+ V +VR + GL+K P
Sbjct: 617 CQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTP 676
Query: 414 GYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEK 473
G S +E + +H F +G HP+S +I L L+ ++ GY P+ VL V ++ K
Sbjct: 677 GCSMVE-IKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVK 734
Query: 474 KRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMR 533
+++L THSEKLA++FGLL T+ G T+ + KNLR+C DCH S V GREIVVRD R
Sbjct: 735 EQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQR 794
Query: 534 FHHFQDGKCSCGNYW 548
FHHF++G CSCG+YW
Sbjct: 795 FHHFKNGACSCGDYW 809
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 147/295 (49%), Gaps = 34/295 (11%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
VFE + K L+ +++G+ L ++ + MR + + PV + + L K C + +
Sbjct: 91 VFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAE 150
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
+ +G++IH ++ GF+ DL+ + MY KC + +RKVFD
Sbjct: 151 LRVGKEIHG-LLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDR-------------- 195
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187
+P +D V+W +V GY QN R A+E + M ++ ++T
Sbjct: 196 -----------------MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFIT 238
Query: 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247
+V V+ A + L +I + A SGF + N+ +AL+DMY+KCGS++ A ++F G
Sbjct: 239 IVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNI--STALVDMYAKCGSLETARQLFDG 296
Query: 248 MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302
M +RNV S++SMI + + A+ +F M+ KP V+ +G L AC+ +G
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLG 351
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 181/394 (45%), Gaps = 79/394 (20%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R VF+++ ++ W ++ GY G + ++ + SM E + P T+ ++ A + +
Sbjct: 190 RKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSAL 249
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
+S+G++IH + GF S + + ++ MY KCG
Sbjct: 250 RLISVGKEIHGYA-MRSGFDSLVNISTALVDMYAKCG----------------------- 285
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
+E+A LF+ + ++ V+W +M+ YVQN P+EA+ F++M GV+
Sbjct: 286 --------SLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTD 337
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
V+++G + ACA LG ++ ++ +++ G NV V ++LI MY KC +D A +F
Sbjct: 338 VSVMGALHACADLGDLERGRFIHKLSVELGLD--RNVSVVNSLISMYCKCKEVDTAASMF 395
Query: 246 VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-- 303
++ R + S+++MILGFA +GR A+ F M KP+ T++ V+TA + + +
Sbjct: 396 GKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITH 455
Query: 304 ----------------KCYGVSPSTDHYA------------------------CMVDLLG 323
+ + D YA M+D G
Sbjct: 456 HAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYG 515
Query: 324 RAGCLEEALKMVEKM---PVEPNGGVWGALLGAC 354
G + AL++ E+M ++PNG + +++ AC
Sbjct: 516 THGFGKAALELFEEMQKGTIKPNGVTFLSVISAC 549
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 149/306 (48%), Gaps = 23/306 (7%)
Query: 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182
T+L+ + G ++ A +F + K V + M+ G+ + + +A+++F RM+Y VE
Sbjct: 73 TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132
Query: 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242
++ C ++ + + SGF ++ + L +MY+KC +++A
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSL--DLFAMTGLENMYAKCRQVNEAR 190
Query: 243 RIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302
++F M +R++ S+++++ G++ +G A A+++ M + KP+ +T + VL A S
Sbjct: 191 KVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVS--A 248
Query: 303 LKCYGVSPSTDHYA-------------CMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGA 349
L+ V YA +VD+ + G LE A ++ + M +E N W +
Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM-LERNVVSWNS 307
Query: 350 LLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT-- 407
++ A + NP+ A + + + E K + ++ ++A A + D+ R R + K++
Sbjct: 308 MIDAYVQNENPKEAMLIFQKMLD-EGVKPTDVSVMGALHACADL-GDLERGRFIHKLSVE 365
Query: 408 -GLKKN 412
GL +N
Sbjct: 366 LGLDRN 371
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/555 (39%), Positives = 330/555 (59%), Gaps = 30/555 (5%)
Query: 18 FLWTALIRGYI-----LQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQ 72
FLW +IR + Q H IS+Y MR + P T L + L + LGQ
Sbjct: 25 FLWNIIIRAIVHNVSSPQRH--SPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQ 82
Query: 73 QIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANN 132
+ HAQ ILL G D +V +++ MY CG L +++VFD+ +D+ +W ++ AYA
Sbjct: 83 RTHAQ-ILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKA 141
Query: 133 GDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQY-----AGVETDYVT 187
G ++ A LF+E+P ++ ++W+ ++ GYV K +EA++ F MQ A V + T
Sbjct: 142 GLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFT 201
Query: 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247
+ V+SAC +LG ++ WV A + ++V+G+ALIDMY+KCGS++ A R+F
Sbjct: 202 MSTVLSACGRLGALEQGKWVH--AYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNA 259
Query: 248 M-KQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTET-KPNGVTFIGVLTACSHVGL-- 303
+ +++V +YS+MI AM+G QLF +M ++ PN VTF+G+L AC H GL
Sbjct: 260 LGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLIN 319
Query: 304 ----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353
+ +G++PS HY CMVDL GR+G ++EA + MP+EP+ +WG+LL
Sbjct: 320 EGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSG 379
Query: 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNP 413
++ + + + A L EL+P G Y++LSN+YA G W +V +R +++ G+ K P
Sbjct: 380 SRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVP 439
Query: 414 GYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEK 473
G S++E + GV+HEF GD + S I L +++ RL+ GY + + VL D+++++K
Sbjct: 440 GCSYVEVE-GVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDK 498
Query: 474 KRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMR 533
+ L HSEKLA+AF L+ T PG VRI+KNLRIC DCHL M S++ REIVVRD R
Sbjct: 499 EIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNR 558
Query: 534 FHHFQDGKCSCGNYW 548
FHHF+DG CSC ++W
Sbjct: 559 FHHFRDGSCSCRDFW 573
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 121/270 (44%), Gaps = 41/270 (15%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMR-----REGIGPVSFTLSALFK 60
R +F+++ +N W+ LI GY++ G K+++ L+ M+ + P FT+S +
Sbjct: 148 RKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLS 207
Query: 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEM-PERDV 119
AC + + G+ +HA I D+ +G +I MY KCG L +++VF+ + ++DV
Sbjct: 208 ACGRLGALEQGKWVHAY-IDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDV 266
Query: 120 VSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYA 179
+++ +I A G + LF+E+ D
Sbjct: 267 KAYSAMICCLAMYGLTDECFQLFSEMTTSD------------------------------ 296
Query: 180 GVETDYVTLVGVISACAQLGVIKYA-NWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSI 238
+ + VT VG++ AC G+I ++ + E G P ++ ++D+Y + G I
Sbjct: 297 NINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITP--SIQHYGCMVDLYGRSGLI 354
Query: 239 DDAYRIFVGMK-QRNVFSYSSMILGFAMHG 267
+A M + +V + S++ G M G
Sbjct: 355 KEAESFIASMPMEPDVLIWGSLLSGSRMLG 384
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/579 (38%), Positives = 334/579 (57%), Gaps = 50/579 (8%)
Query: 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREG-IGPVSFTLSALFKACTEVLDVSLGQQI 74
+ F++ L+RGY +S++++ M R+G + P SF+ + + KA + G Q+
Sbjct: 69 DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 128
Query: 75 HAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVA------ 128
H Q L G S L+VG T+IGMY CG + +RKVFDEM + ++V+W +I A
Sbjct: 129 HCQA-LKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGND 187
Query: 129 -------------------------YANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQN 163
Y G++ESA +F+E+P +D V+W+ M+ G N
Sbjct: 188 VAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHN 247
Query: 164 AKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVV 223
E+ YF +Q AG+ + V+L GV+SAC+Q G ++ + E +G+ I V
Sbjct: 248 GSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWI--VS 305
Query: 224 VGSALIDMYSKCGSIDDAYRIFVGMKQ-RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282
V +ALIDMYS+CG++ A +F GM++ R + S++SMI G AMHG+ A++LF +M
Sbjct: 306 VNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAY 365
Query: 283 ETKPNGVTFIGVLTACSHVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEE 330
P+G++FI +L ACSH GL + Y + P +HY CMVDL GR+G L++
Sbjct: 366 GVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQK 425
Query: 331 ALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390
A + +MP+ P VW LLGAC H N E+A+ L EL+P+ G+ ++LSN YA+
Sbjct: 426 AYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYAT 485
Query: 391 AGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLD 450
AG W DV+ +R+ + + +KK +S +E + +++F AG+ E + L +++
Sbjct: 486 AGKWKDVASIRKSMIVQRIKKTTAWSLVEVGK-TMYKFTAGEKKKGIDIEAHEKLKEIIL 544
Query: 451 RLQAD-GYQPNLRSVLYDVSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICE 509
RL+ + GY P + S LYDV +EEK+ + HSEKLALAF L S GA +RI+KNLRIC
Sbjct: 545 RLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICR 604
Query: 510 DCHLFMCGASQVIGREIVVRDNMRFHHFQDGKCSCGNYW 548
DCH M S+V G EI+VRD RFH F+DG CSC +YW
Sbjct: 605 DCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 218/564 (38%), Positives = 330/564 (58%), Gaps = 56/564 (9%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSM------RREGIGPVSFTLSALF 59
R VF+++ +N WT++IRGY L G+ D++SL+ + + + S L ++
Sbjct: 131 RKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVI 190
Query: 60 KACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCS--RKVFDEMPER 117
AC+ V L + IH+ ++ GF + VGNT++ Y K G G + RK+FD++ +
Sbjct: 191 SACSRVPAKGLTESIHS-FVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD- 248
Query: 118 DVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQ 177
KD+V++ ++++ Y Q+ EA E F R+
Sbjct: 249 ------------------------------KDRVSYNSIMSVYAQSGMSNEAFEVFRRLV 278
Query: 178 YAGVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG 236
V T + +TL V+ A + G ++ C + G ++V+VG+++IDMY KCG
Sbjct: 279 KNKVVTFNAITLSTVLLAVSHSGALRIGK--CIHDQVIRMGLEDDVIVGTSIIDMYCKCG 336
Query: 237 SIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLT 296
++ A + F MK +NV S+++MI G+ MHG A A++LF M+ + +PN +TF+ VL
Sbjct: 337 RVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLA 396
Query: 297 ACSHVGLKC------------YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNG 344
ACSH GL +GV P +HY CMVDLLGRAG L++A ++++M ++P+
Sbjct: 397 ACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDS 456
Query: 345 GVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLL 404
+W +LL AC+IH+N E+A+I+ LFEL+ G Y++LS+IYA AG W DV RVR ++
Sbjct: 457 IIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIM 516
Query: 405 KMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSV 464
K GL K PG+S LE + G +H F GD HP +I + L +L +L GY N SV
Sbjct: 517 KNRGLVKPPGFSLLELN-GEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSV 575
Query: 465 LYDVSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGR 524
+DV +EEK+ L HSEKLA+AFG++ T PG+TV ++KNLR+C DCH + S+++ R
Sbjct: 576 CHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDR 635
Query: 525 EIVVRDNMRFHHFQDGKCSCGNYW 548
E VVRD RFHHF+DG CSCG+YW
Sbjct: 636 EFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 178/398 (44%), Gaps = 55/398 (13%)
Query: 12 VKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLG 71
V + F W ++I G +++ + SMR+ + P + KAC+ + D+ G
Sbjct: 36 VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSG 95
Query: 72 QQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYAN 131
+Q H Q + G + SD++V + +I MY CG L +RKVFDE+P+R++VSWT +I Y
Sbjct: 96 KQTHQQAFVFG-YQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDL 154
Query: 132 NGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGV 191
NG+ A LF +L + + AM D + LV V
Sbjct: 155 NGNALDAVSLFKDLLVDENDDDDAMF-------------------------LDSMGLVSV 189
Query: 192 ISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS--IDDAYRIFVGMK 249
ISAC+++ + GF V VG+ L+D Y+K G + A +IF +
Sbjct: 190 ISACSRVPAKGLTESIHSFVIKRGFD--RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIV 247
Query: 250 QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKP-NGVTFIGVLTACSHVGL----K 304
++ SY+S++ +A G ++ A ++F +VK + N +T VL A SH G K
Sbjct: 248 DKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGK 307
Query: 305 C-------YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIH 357
C G+ ++D+ + G +E A K ++M N W A++ +H
Sbjct: 308 CIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMH 366
Query: 358 RNPEIAQIAANHLFELEPDKIG-----NYIILSNIYAS 390
+ A EL P I NYI ++ A+
Sbjct: 367 GHAAKA-------LELFPAMIDSGVRPNYITFVSVLAA 397
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 123/275 (44%), Gaps = 36/275 (13%)
Query: 141 LFNELPLK-DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG 199
LFN K D +W +++ ++ EA+ F M+ + + I AC+ L
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90
Query: 200 VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSM 259
I + + FG +++ V SALI MYS CG ++DA ++F + +RN+ S++SM
Sbjct: 91 DIFSGKQTHQ--QAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148
Query: 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTF------IGVLTACSHVGLKCYGVSPSTD 313
I G+ ++G A A+ LF D++ E + F + V++ACS V K
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAK--------- 199
Query: 314 HYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFE- 372
G E V K + V LL A + E A +F+
Sbjct: 200 ------------GLTESIHSFVIKRGFDRGVSVGNTLLDAYA--KGGEGGVAVARKIFDQ 245
Query: 373 -LEPDKIGNYIILSNIYASAGMWDDVSRV-RRLLK 405
++ D++ I+S +YA +GM ++ V RRL+K
Sbjct: 246 IVDKDRVSYNSIMS-VYAQSGMSNEAFEVFRRLVK 279
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/559 (36%), Positives = 323/559 (57%), Gaps = 18/559 (3%)
Query: 4 FPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREG--IGPVSFTLSALFKA 61
+ + ++ + F ++IR + + S Y + G + P ++T++ L +A
Sbjct: 58 YANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQA 117
Query: 62 CTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVS 121
CT + G Q+H TI G F +D +V +I +Y + G L KVF+ +P D V
Sbjct: 118 CTGLRMRETGLQVHGMTIRRG-FDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVC 176
Query: 122 WTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV 181
T ++ A A GD+ A LF +P +D +AW AM++GY Q + REA+ F MQ GV
Sbjct: 177 RTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGV 236
Query: 182 ETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDA 241
+ + V ++ V+SAC QLG + W E + V + + L+D+Y+KCG ++ A
Sbjct: 237 KVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKI--TVRLATTLVDLYAKCGDMEKA 294
Query: 242 YRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301
+F GM+++NV+++SS + G AM+G ++LF M + PN VTF+ VL CS V
Sbjct: 295 MEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVV 354
Query: 302 GL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGA 349
G +G+ P +HY C+VDL RAG LE+A+ ++++MP++P+ VW +
Sbjct: 355 GFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSS 414
Query: 350 LLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409
LL A ++++N E+ +A+ + ELE G Y++LSNIYA + WD+VS VR+ +K G+
Sbjct: 415 LLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGV 474
Query: 410 KKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVS 469
+K PG S +E + G +HEF GD +HP T+I D+ RL+ GY+ + V++D+
Sbjct: 475 RKQPGCSVMEVN-GEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDID 533
Query: 470 DEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVR 529
+EEK+ L HSEK A+AFG+++ +RI+KNLR+C DCH S++ REI+VR
Sbjct: 534 EEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVR 593
Query: 530 DNMRFHHFQDGKCSCGNYW 548
D RFHHF+DG CSC +W
Sbjct: 594 DRNRFHHFKDGHCSCNGFW 612
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/562 (37%), Positives = 330/562 (58%), Gaps = 52/562 (9%)
Query: 3 SFPRLVFEQV-KYKNPFLWTALIRGYILQGHLKDSISLYCSMRREG-IGPVSFTLSALFK 60
S+ VF ++ K N F+W LIRGY G+ + SLY MR G + P + T L K
Sbjct: 70 SYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIK 129
Query: 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVV 120
A T + DV LG+ IH+ ++ GF S +YV N+++ +Y CG
Sbjct: 130 AVTTMADVRLGETIHS-VVIRSGFGSLIYVQNSLLHLYANCG------------------ 170
Query: 121 SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180
D+ SA +F+++P KD VAW +++ G+ +N KP EA+ + M G
Sbjct: 171 -------------DVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKG 217
Query: 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240
++ D T+V ++SACA++G + V G N+ + L+D+Y++CG +++
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL--TRNLHSSNVLLDLYARCGRVEE 275
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTE-TKPNGVTFIGVLTACS 299
A +F M +N S++S+I+G A++G AI+LF M TE P +TF+G+L ACS
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335
Query: 300 HVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVW 347
H G+ + Y + P +H+ CMVDLL RAG +++A + ++ MP++PN +W
Sbjct: 336 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 395
Query: 348 GALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407
LLGAC +H + ++A+ A + +LEP+ G+Y++LSN+YAS W DV ++R+ +
Sbjct: 396 RTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 455
Query: 408 GLKKNPGYSWLE-GDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLY 466
G+KK PG+S +E G+R +HEF GD +HP S I L ++ RL+++GY P + +V
Sbjct: 456 GVKKVPGHSLVEVGNR--VHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYV 513
Query: 467 DVSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREI 526
DV +EEK+ ++ HSEK+A+AF L++T + + ++KNLR+C DCHL + S+V REI
Sbjct: 514 DVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREI 573
Query: 527 VVRDNMRFHHFQDGKCSCGNYW 548
VVRD RFHHF++G CSC +YW
Sbjct: 574 VVRDRSRFHHFKNGSCSCQDYW 595
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/553 (37%), Positives = 317/553 (57%), Gaps = 56/553 (10%)
Query: 9 FEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDV 68
F+++ +K+ W +I GY +G ++ + L+ SM E +V
Sbjct: 147 FDRMPFKDAASWNTMITGYARRGEMEKARELFYSM-------------------MEKNEV 187
Query: 69 SLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVA 128
S N MI Y++CG L + F P R VV+WT +I
Sbjct: 188 SW---------------------NAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITG 226
Query: 129 YANNGDMESAGGLFNELPL-KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187
Y +E A +F ++ + K+ V W AM++GYV+N++P + ++ F M G+ +
Sbjct: 227 YMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSG 286
Query: 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247
L + C++L ++ + +I S N+V ++LI MY KCG + DA+++F
Sbjct: 287 LSSALLGCSELSALQLGRQIHQIVSKSTL--CNDVTALTSLISMYCKCGELGDAWKLFEV 344
Query: 248 MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---- 303
MK+++V ++++MI G+A HG A A+ LF +M+ + +P+ +TF+ VL AC+H GL
Sbjct: 345 MKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIG 404
Query: 304 --------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQ 355
+ Y V P DHY CMVDLLGRAG LEEALK++ MP P+ V+G LLGAC+
Sbjct: 405 MAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACR 464
Query: 356 IHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGY 415
+H+N E+A+ AA L +L Y+ L+NIYAS W+DV+RVR+ +K + + K PGY
Sbjct: 465 VHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGY 524
Query: 416 SWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKR 475
SW+E R +H FR+ D HP I + L +L +++ GY+P L L++V +E+K++
Sbjct: 525 SWIE-IRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEK 583
Query: 476 ILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFH 535
+L+ HSEKLA+AFG + G+ +++ KNLRIC DCH + S++ REI+VRD RFH
Sbjct: 584 LLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFH 643
Query: 536 HFQDGKCSCGNYW 548
HF+DG CSCG+YW
Sbjct: 644 HFKDGSCSCGDYW 656
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 127/269 (47%), Gaps = 23/269 (8%)
Query: 107 SRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKP 166
+ ++FDE+PE D S+ ++ Y N + E A F+ +P KD +W M+TGY + +
Sbjct: 112 AHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEM 171
Query: 167 REAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGS 226
+A E F Y+ +E + V+ +IS + G ++ A+ ++A P+ VV +
Sbjct: 172 EKARELF----YSMMEKNEVSWNAMISGYIECGDLEKASHFFKVA------PVRGVVAWT 221
Query: 227 ALIDMYSKCGSIDDAYRIFVGMK-QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK 285
A+I Y K ++ A +F M +N+ ++++MI G+ + R ++LF M++ +
Sbjct: 222 AMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIR 281
Query: 286 PNGVTFIGVLTACSHVGLKCYG------VSPST-----DHYACMVDLLGRAGCLEEALKM 334
PN L CS + G VS ST ++ + + G L +A K+
Sbjct: 282 PNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKL 341
Query: 335 VEKMPVEPNGGVWGALLGACQIHRNPEIA 363
E M + + W A++ H N + A
Sbjct: 342 FEVMK-KKDVVAWNAMISGYAQHGNADKA 369
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 125/302 (41%), Gaps = 37/302 (12%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R +F + KN W A+I GYI G L+ + + G+ + ++ KA
Sbjct: 175 RELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVE 234
Query: 66 L------DVSLGQQIHAQTILLGGFTSD------LYVGNTMIGMYVK-------CGFLGC 106
L D+++ + + ++ G+ + L + M+ ++ LGC
Sbjct: 235 LAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGC 294
Query: 107 S--------RKVFDEMPE----RDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWT 154
S R++ + + DV + T LI Y G++ A LF + KD VAW
Sbjct: 295 SELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWN 354
Query: 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCE-IAEG 213
AM++GY Q+ +A+ F M + D++T V V+ AC G++ E +
Sbjct: 355 AMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRD 414
Query: 214 SGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAI 273
P + + ++D+ + G +++A ++ M R + +LG R H +
Sbjct: 415 YKVEPQPDHY--TCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGAC---RVHKNV 469
Query: 274 QL 275
+L
Sbjct: 470 EL 471
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/554 (37%), Positives = 311/554 (56%), Gaps = 46/554 (8%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R VFE++ ++ WT LI GY D++ + M R G P FTLS++ KA
Sbjct: 115 RKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAE 174
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
G Q+H + G F S+++VG+ ++ +Y + G
Sbjct: 175 RRGCCGHQLHGFCVKCG-FDSNVHVGSALLDLYTRYGL---------------------- 211
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
M+ A +F+ L ++ V+W A++ G+ + + +A+E F+ M G +
Sbjct: 212 ---------MDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSH 262
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
+ + AC+ G ++ WV SG + G+ L+DMY+K GSI DA +IF
Sbjct: 263 FSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLV--AFAGNTLLDMYAKSGSIHDARKIF 320
Query: 246 VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-- 303
+ +R+V S++S++ +A HG A+ F +M + +PN ++F+ VLTACSH GL
Sbjct: 321 DRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLD 380
Query: 304 ---------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGAC 354
K G+ P HY +VDLLGRAG L AL+ +E+MP+EP +W ALL AC
Sbjct: 381 EGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNAC 440
Query: 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPG 414
++H+N E+ AA H+FEL+PD G ++IL NIYAS G W+D +RVR+ +K +G+KK P
Sbjct: 441 RMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPA 500
Query: 415 YSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKK 474
SW+E + IH F A D HP EI + ++L +++ GY P+ V+ V +E++
Sbjct: 501 CSWVEIE-NAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQERE 559
Query: 475 RILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRF 534
L HSEK+ALAF LL T PG+T+ I KN+R+C DCH + AS+V+GREI+VRD RF
Sbjct: 560 VNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRF 619
Query: 535 HHFQDGKCSCGNYW 548
HHF+DG CSC +YW
Sbjct: 620 HHFKDGNCSCKDYW 633
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 146/313 (46%), Gaps = 46/313 (14%)
Query: 56 SALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP 115
+ L K CT + G+ +HA IL F D+ +GNT++ MY KCG
Sbjct: 64 NTLLKKCTVFKLLIQGRIVHAH-ILQSIFRHDIVMGNTLLNMYAKCG------------- 109
Query: 116 ERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFER 175
+E A +F ++P +D V WT +++GY Q+ +P +A+ +F +
Sbjct: 110 ------------------SLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQ 151
Query: 176 MQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKC 235
M G + TL VI A A + + GF +NV VGSAL+D+Y++
Sbjct: 152 MLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFD--SNVHVGSALLDLYTRY 209
Query: 236 GSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295
G +DDA +F ++ RN S++++I G A A++LF M++ +P+ ++ +
Sbjct: 210 GLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLF 269
Query: 296 TACSHVG-------LKCYGVSPSTDHYA----CMVDLLGRAGCLEEALKMVEKMPVEPNG 344
ACS G + Y + A ++D+ ++G + +A K+ +++ + +
Sbjct: 270 GACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL-AKRDV 328
Query: 345 GVWGALLGACQIH 357
W +LL A H
Sbjct: 329 VSWNSLLTAYAQH 341
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/558 (36%), Positives = 324/558 (58%), Gaps = 30/558 (5%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVS--FTLSALFKACT 63
R F+ + ++ W +I GY G + ++ L+ PV FT +A+
Sbjct: 239 RQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE------SPVQDVFTWTAMVSGYI 292
Query: 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWT 123
+ V +++ + + N M+ YV+ + ++++FD MP R+V +W
Sbjct: 293 QNRMVEEARELFDKMP-----ERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWN 347
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183
+I YA G + A LF+++P +D V+W AM+ GY Q+ EA+ F +M+ G
Sbjct: 348 TMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRL 407
Query: 184 DYVTLVGVISACAQLGVIKYANWV-CEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242
+ + +S CA + ++ + + +G G VG+AL+ MY KCGSI++A
Sbjct: 408 NRSSFSSALSTCADVVALELGKQLHGRLVKG---GYETGCFVGNALLLMYCKCGSIEEAN 464
Query: 243 RIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302
+F M +++ S+++MI G++ HG A++ F M + KP+ T + VL+ACSH G
Sbjct: 465 DLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTG 524
Query: 303 L------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGAL 350
L + YGV P++ HYACMVDLLGRAG LE+A +++ MP EP+ +WG L
Sbjct: 525 LVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTL 584
Query: 351 LGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410
LGA ++H N E+A+ AA+ +F +EP+ G Y++LSN+YAS+G W DV ++R ++ G+K
Sbjct: 585 LGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVK 644
Query: 411 KNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSD 470
K PGYSW+E + H F GD HP EI L +L R++ GY VL+DV +
Sbjct: 645 KVPGYSWIE-IQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEE 703
Query: 471 EEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRD 530
EEK+R++ HSE+LA+A+G++ S G +R++KNLR+CEDCH + +++ GR I++RD
Sbjct: 704 EEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRD 763
Query: 531 NMRFHHFQDGKCSCGNYW 548
N RFHHF+DG CSCG+YW
Sbjct: 764 NNRFHHFKDGSCSCGDYW 781
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 146/296 (49%), Gaps = 19/296 (6%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R +FE + ++ W ++ GY G + D+ S++ M + + LSA
Sbjct: 146 RELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAY------- 198
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
V + A + L N ++G +VK + +R+ FD M RDVVSW +
Sbjct: 199 --VQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTI 256
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
I YA +G ++ A LF+E P++D WTAMV+GY+QN EA E F++M E +
Sbjct: 257 ITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP----ERNE 312
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
V+ +++ Q ++ A + ++ P NV + +I Y++CG I +A +F
Sbjct: 313 VSWNAMLAGYVQGERMEMAKELFDVM------PCRNVSTWNTMITGYAQCGKISEAKNLF 366
Query: 246 VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301
M +R+ S+++MI G++ G + A++LF M + + N +F L+ C+ V
Sbjct: 367 DKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADV 422
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 157/340 (46%), Gaps = 31/340 (9%)
Query: 20 WTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTI 79
W I Y+ G +++ ++ M R + +S + L L ++ +
Sbjct: 67 WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPER-- 124
Query: 80 LLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAG 139
DL N MI YV+ LG +R++F+ MPERDV SW ++ YA NG ++ A
Sbjct: 125 -------DLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDAR 177
Query: 140 GLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFE-RMQYAGVETDYVTLVGVISACAQL 198
+F+ +P K+ V+W A+++ YVQN+K EA F+ R +A V + C
Sbjct: 178 SVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWN----------CLLG 227
Query: 199 GVIKYANWVCEIAEGSGFGP---INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFS 255
G +K +I E F + +VV + +I Y++ G ID+A ++F ++VF+
Sbjct: 228 GFVKKK----KIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFT 283
Query: 256 YSSMILGFAMHGRAHAAIQLFGDM-VKTETKPNGVTFIGVLTACSHVGLKCYGVSP--ST 312
+++M+ G+ + A +LF M + E N + V + + + V P +
Sbjct: 284 WTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNV 343
Query: 313 DHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLG 352
+ M+ + G + EA + +KMP + + W A++
Sbjct: 344 STWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIA 382
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 141/311 (45%), Gaps = 27/311 (8%)
Query: 72 QQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYAN 131
Q+ + +L G SD+ N I Y++ G + +VF MP VS+ +I Y
Sbjct: 49 QKSQTKPLLKCG-DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLR 107
Query: 132 NGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGV 191
NG+ E A LF+E+P +D V+W M+ GYV+N +A E FE M E D + +
Sbjct: 108 NGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMP----ERDVCSWNTM 163
Query: 192 ISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR 251
+S AQ G + A V + P N V +AL+ Y + +++A +F +
Sbjct: 164 LSGYAQNGCVDDARSVFDRM------PEKNDVSWNALLSAYVQNSKMEEACMLFKSRENW 217
Query: 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG-----LKCY 306
+ S++ ++ GF + A Q F M + V++ ++T + G + +
Sbjct: 218 ALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDV----VSWNTIITGYAQSGKIDEARQLF 273
Query: 307 GVSPSTD--HYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQ 364
SP D + MV + +EEA ++ +KMP E N W A+L E+A+
Sbjct: 274 DESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP-ERNEVSWNAMLAGYVQGERMEMAK 332
Query: 365 IAANHLFELEP 375
LF++ P
Sbjct: 333 ----ELFDVMP 339
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/553 (38%), Positives = 321/553 (58%), Gaps = 22/553 (3%)
Query: 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQI 74
K+ WT L+ + G L +S+ L+ MRR+ + ++ LF C ++ D+ QQ
Sbjct: 74 KDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQG 133
Query: 75 HAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGD 134
H + +G TS + V N ++ MY KCG + +++F+E+ E+ VVSWT ++
Sbjct: 134 HGVAVKMGVLTS-VKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEG 192
Query: 135 MESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQY-AGVETDYVTLVGVIS 193
+E +F+E+P ++ VAWT MV GY+ RE +E M + G ++VTL ++S
Sbjct: 193 LERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLS 252
Query: 194 ACAQLGVIKYANWVCEIAEGSGF-----GPINNVVVGSALIDMYSKCGSIDDAYRIFVGM 248
ACAQ G + WV A ++V+VG+AL+DMY+KCG+ID + +F M
Sbjct: 253 ACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLM 312
Query: 249 KQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG------ 302
++RNV +++++ G AMHG+ I +F M++ E KP+ +TF VL+ACSH G
Sbjct: 313 RKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR-EVKPDDLTFTAVLSACSHSGIVDEGW 371
Query: 303 -----LKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIH 357
L+ YG+ P DHYACMVDLLGRAG +EEA ++ +MPV PN V G+LLG+C +H
Sbjct: 372 RCFHSLRFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVH 431
Query: 358 RNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSW 417
EIA+ L ++ P I++SN+Y + G D +R L+ G++K PG S
Sbjct: 432 GKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSS 491
Query: 418 LEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSD--EEKKR 475
+ + V H F +GD +HP + EI L ++++R+++ GY P++ ++ EEK++
Sbjct: 492 IYVNDSV-HRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQ 550
Query: 476 ILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFH 535
L HSEKLA+ FGLL T P + + KNLRIC DCH M S+V REI++RD RFH
Sbjct: 551 ALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFH 610
Query: 536 HFQDGKCSCGNYW 548
F+ G CSC +YW
Sbjct: 611 QFKGGSCSCSDYW 623
Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 148/339 (43%), Gaps = 65/339 (19%)
Query: 129 YANNGDMESAGGLFNELPL--KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYV 186
YA++G+M +A LF+E+PL KD V WT +++ + + +++ F M+ VE D V
Sbjct: 53 YASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDV 112
Query: 187 TLVGVISACAQLGVIKYANWVCEIAEGSG----FGPINNVVVGSALIDMYSKCGSIDDAY 242
++V + CA+L + +A +G G G + +V V +AL+DMY KCG + +
Sbjct: 113 SVVCLFGVCAKLEDLGFAQ------QGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVK 166
Query: 243 RIFV-------------------------------GMKQRNVFSYSSMILGFAMHGRAHA 271
RIF M +RN +++ M+ G+ G
Sbjct: 167 RIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTRE 226
Query: 272 AIQLFGDMV-KTETKPNGVTFIGVLTACSHVG------------LK---CYGVSPSTDHY 315
++L +MV + N VT +L+AC+ G LK G S D
Sbjct: 227 VLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDV 286
Query: 316 ---ACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIH-RNPEIAQIAANHLF 371
+VD+ + G ++ ++ + M + N W AL +H + + + +
Sbjct: 287 MVGTALVDMYAKCGNIDSSMNVFRLMR-KRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR 345
Query: 372 ELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410
E++PD + +LS + +G+ D+ R L+ GL+
Sbjct: 346 EVKPDDLTFTAVLSAC-SHSGIVDEGWRCFHSLRFYGLE 383
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 134/289 (46%), Gaps = 18/289 (6%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMR-REGIGPVSFTLSALFKACTE 64
R VF ++ +N WT ++ GY+ G ++ + L M R G G TL ++ AC +
Sbjct: 197 REVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQ 256
Query: 65 VLDVSLGQQIHA----QTILLGGFTS--DLYVGNTMIGMYVKCGFLGCSRKVFDEMPERD 118
++ +G+ +H + +++G S D+ VG ++ MY KCG + S VF M +R+
Sbjct: 257 SGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRN 316
Query: 119 VVSWTELIVAYANNGDMESAGGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFER 175
VV+W L A +G +F ++ + D + +TA+++ + E F
Sbjct: 317 VVTWNALFSGLAMHGKGRMVIDMFPQMIREVKPDDLTFTAVLSACSHSGIVDEGWRCFHS 376
Query: 176 MQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKC 235
+++ G+E ++ + G+I+ A EI P N VV+GS L+ S
Sbjct: 377 LRFYGLEPKVDHYACMVDLLGRAGLIEEA----EILMREMPVPPNEVVLGS-LLGSCSVH 431
Query: 236 GSIDDAYRIFVGMKQRNVFSYSSMILGFAMH---GRAHAAIQLFGDMVK 281
G ++ A RI + Q + + IL M+ GR+ A L G + K
Sbjct: 432 GKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRK 480
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 218/628 (34%), Positives = 338/628 (53%), Gaps = 85/628 (13%)
Query: 3 SFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKAC 62
+F R VF+ + F W A+IRGY H +D++ +Y +M+ + P SFT L KAC
Sbjct: 70 TFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKAC 129
Query: 63 T-------------EVLDVSLGQQIHAQTILLGGFTSDLYVGNT---------------- 93
+ +V + + Q L+ + +G+
Sbjct: 130 SGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVS 189
Query: 94 ---MIGMYVKCGFLGCSRKVFDEMPERDVV-SWTELI----------------------- 126
++ Y + G + ++F +M + DV W L+
Sbjct: 190 WTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVV 249
Query: 127 ---------------VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIE 171
YA G + +A LF+++ + + W AM++GY +N REAI+
Sbjct: 250 KMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAID 309
Query: 172 YFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231
F M V D +++ ISACAQ+G ++ A + E S + ++V + SALIDM
Sbjct: 310 MFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYR--DDVFISSALIDM 367
Query: 232 YSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTF 291
++KCGS++ A +F R+V +S+MI+G+ +HGRA AI L+ M + PN VTF
Sbjct: 368 FAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTF 427
Query: 292 IGVLTACSHVGLKCYG-----------VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPV 340
+G+L AC+H G+ G ++P HYAC++DLLGRAG L++A ++++ MPV
Sbjct: 428 LGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPV 487
Query: 341 EPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRV 400
+P VWGALL AC+ HR+ E+ + AA LF ++P G+Y+ LSN+YA+A +WD V+ V
Sbjct: 488 QPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEV 547
Query: 401 RRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPN 460
R +K GL K+ G SW+E RG + FR GD +HP EI++ + + RL+ G+ N
Sbjct: 548 RVRMKEKGLNKDVGCSWVEV-RGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVAN 606
Query: 461 LRSVLYDVSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQ 520
+ L+D++DEE + L +HSE++A+A+GL++T G +RI KNLR C +CH S+
Sbjct: 607 KDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISK 666
Query: 521 VIGREIVVRDNMRFHHFQDGKCSCGNYW 548
++ REIVVRD RFHHF+DG CSCG+YW
Sbjct: 667 LVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 117/243 (48%), Gaps = 16/243 (6%)
Query: 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182
T+LI A ++ GD+ A +F++LP W A++ GY +N ++A+ + MQ A V
Sbjct: 57 TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116
Query: 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242
D T ++ AC+ L ++ +V GF +V V + LI +Y+KC + A
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDA--DVFVQNGLIALYAKCRRLGSAR 174
Query: 243 RIFVG--MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS- 299
+F G + +R + S+++++ +A +G A+++F M K + KP+ V + VL A +
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTC 234
Query: 300 ----------HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGA 349
H + G+ D + + + G + A + +KM PN +W A
Sbjct: 235 LQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNA 293
Query: 350 LLG 352
++
Sbjct: 294 MIS 296
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/553 (37%), Positives = 313/553 (56%), Gaps = 52/553 (9%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
+F+Q+ +N WT +I Y + ++ L M R+ + P +T S++ ++C + D
Sbjct: 118 LFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSD 177
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
V + + CG + E E DV + LI
Sbjct: 178 VRM----------------------------LHCG-------IIKEGLESDVFVRSALID 202
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187
+A G+ E A +F+E+ D + W +++ G+ QN++ A+E F+RM+ AG + T
Sbjct: 203 VFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQAT 262
Query: 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247
L V+ AC L +++ A ++++ +AL+DMY KCGS++DA R+F
Sbjct: 263 LTSVLRACTGLALLELGMQ----AHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQ 318
Query: 248 MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---- 303
MK+R+V ++S+MI G A +G + A++LF M + TKPN +T +GVL ACSH GL
Sbjct: 319 MKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378
Query: 304 --------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQ 355
K YG+ P +HY CM+DLLG+AG L++A+K++ +M EP+ W LLGAC+
Sbjct: 379 WYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACR 438
Query: 356 IHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGY 415
+ RN +A+ AA + L+P+ G Y +LSNIYA++ WD V +R ++ G+KK PG
Sbjct: 439 VQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGC 498
Query: 416 SWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKR 475
SW+E ++ IH F GD +HP E+ + L L+ RL GY P VL D+ E+ +
Sbjct: 499 SWIEVNKQ-IHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMED 557
Query: 476 ILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFH 535
L HSEKLALAFGL+T +RI KNLRIC DCH+F AS++ R IV+RD +R+H
Sbjct: 558 SLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYH 617
Query: 536 HFQDGKCSCGNYW 548
HFQDGKCSCG+YW
Sbjct: 618 HFQDGKCSCGDYW 630
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/553 (37%), Positives = 324/553 (58%), Gaps = 45/553 (8%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
+F+++ K+ W A+I GY G+ K+++ L+ M + + P T+ + AC +
Sbjct: 222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 281
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
+ LG+Q+H I GF S+L + N +I +Y KCG
Sbjct: 282 IELGRQVHLW-IDDHGFGSNLKIVNALIDLYSKCG------------------------- 315
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187
++E+A GLF LP KD ++W ++ GY +EA+ F+ M +G + VT
Sbjct: 316 ------ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 369
Query: 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247
++ ++ ACA LG I W+ + G N + ++LIDMY+KCG I+ A+++F
Sbjct: 370 MLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNS 429
Query: 248 MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---- 303
+ +++ S+++MI GFAMHGRA A+ LF M K +P+ +TF+G+L+ACSH G+
Sbjct: 430 ILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLG 489
Query: 304 --------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQ 355
+ Y ++P +HY CM+DLLG +G +EA +M+ M +EP+G +W +LL AC+
Sbjct: 490 RHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACK 549
Query: 356 IHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGY 415
+H N E+ + A +L ++EP+ G+Y++LSNIYASAG W++V++ R LL G+KK PG
Sbjct: 550 MHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGC 609
Query: 416 SWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKR 475
S +E D V+HEF GD HP + EI L ++ L+ G+ P+ VL ++ +E K+
Sbjct: 610 SSIEID-SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEG 668
Query: 476 ILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFH 535
L HSEKLA+AFGL++T PG + I+KNLR+C +CH S++ REI+ RD RFH
Sbjct: 669 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 728
Query: 536 HFQDGKCSCGNYW 548
HF+DG CSC +YW
Sbjct: 729 HFRDGVCSCNDYW 741
Score = 219 bits (559), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 220/407 (54%), Gaps = 28/407 (6%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
VF+ ++ N +W + RG+ L ++ LY M G+ P S+T + K+C +
Sbjct: 90 VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
GQQIH + LG DLYV ++I MYV+ G L + KVFD+ P RDVVS+T LI
Sbjct: 150 FKEGQQIHGHVLKLGC-DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIK 208
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187
YA+ G +E+A LF+E+P+KD V+W AM++GY + +EA+E F+ M V D T
Sbjct: 209 GYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDEST 268
Query: 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247
+V V+SACAQ G I+ V + GFG +N+ + +ALID+YSKCG ++ A +F
Sbjct: 269 MVTVVSACAQSGSIELGRQVHLWIDDHGFG--SNLKIVNALIDLYSKCGELETACGLFER 326
Query: 248 MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---- 303
+ ++V S++++I G+ A+ LF +M+++ PN VT + +L AC+H+G
Sbjct: 327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 386
Query: 304 ---------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGAC 354
+ GV+ ++ ++D+ + G +E A ++ + + + W A++
Sbjct: 387 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGF 445
Query: 355 QIHRNPEIAQIAANHLFE------LEPDKIGNYIILSNIYASAGMWD 395
+H + A+ LF ++PD I ++ L + + +GM D
Sbjct: 446 AMHGRAD----ASFDLFSRMRKIGIQPDDI-TFVGLLSACSHSGMLD 487
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSH 300
A +F +++ N+ +++M G A+ +A++L+ M+ PN TF VL +C+
Sbjct: 87 AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146
Query: 301 V-----GLKCYG----VSPSTDHY--ACMVDLLGRAGCLEEALKMVEKMP 339
G + +G + D Y ++ + + G LE+A K+ +K P
Sbjct: 147 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSP 196
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/553 (36%), Positives = 329/553 (59%), Gaps = 28/553 (5%)
Query: 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIH 75
N W ++ G+ G+ K+++ ++ + G P T+S++ + + +++G+ IH
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275
Query: 76 AQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDM 135
I G D V + MI MY K G + +F++ + I + NG +
Sbjct: 276 GYVIK-QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334
Query: 136 ESA---GGLFNELPLK-DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGV 191
+ A LF E ++ + V+WT+++ G QN K EA+E F MQ AGV+ ++VT+ +
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394
Query: 192 ISACAQLGVIKYANWVCEIAEGSGFGP----INNVVVGSALIDMYSKCGSIDDAYRIFVG 247
+ AC + + + GF ++NV VGSALIDMY+KCG I+ + +F
Sbjct: 395 LPACGNIAALGHGR------STHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNM 448
Query: 248 MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---- 303
M +N+ ++S++ GF+MHG+A + +F +++T KP+ ++F +L+AC VGL
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508
Query: 304 --------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQ 355
+ YG+ P +HY+CMV+LLGRAG L+EA ++++MP EP+ VWGALL +C+
Sbjct: 509 WKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCR 568
Query: 356 IHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGY 415
+ N ++A+IAA LF LEP+ G Y++LSNIYA+ GMW +V +R ++ GLKKNPG
Sbjct: 569 LQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGC 628
Query: 416 SWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKR 475
SW++ + ++ AGD +HP +I + + ++ ++ G++PNL L+DV ++E+++
Sbjct: 629 SWIQV-KNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQ 687
Query: 476 ILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFH 535
+L HSEKLA+ FGLL T G ++++KNLRIC DCH + S GREI +RD RFH
Sbjct: 688 MLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFH 747
Query: 536 HFQDGKCSCGNYW 548
HF+DG CSCG++W
Sbjct: 748 HFKDGICSCGDFW 760
Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 110/433 (25%), Positives = 196/433 (45%), Gaps = 60/433 (13%)
Query: 7 LVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVL 66
LV + + + +++LI SI ++ M G+ P S L LFK C E+
Sbjct: 71 LVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELS 130
Query: 67 DVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELI 126
+G+QIH + + G D +V +M MY++CG +G +RKVFD M ++DVV+ + L+
Sbjct: 131 AFKVGKQIHCVSCV-SGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALL 189
Query: 127 VAYANNGDMESAGGLFNELPLK----DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182
AYA G +E + +E+ + V+W +++G+ ++ +EA+ F+++ + G
Sbjct: 190 CAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFC 249
Query: 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS----- 237
D VT+ V+ + ++ + G + + V SA+IDMY K G
Sbjct: 250 PDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGL--LKDKCVISAMIDMYGKSGHVYGII 307
Query: 238 --------------------------IDDAYRIFVGMKQR----NVFSYSSMILGFAMHG 267
+D A +F K++ NV S++S+I G A +G
Sbjct: 308 SLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNG 367
Query: 268 RAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYA----------- 316
+ A++LF +M KPN VT +L AC ++ +G ST +A
Sbjct: 368 KDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHG--RSTHGFAVRVHLLDNVHV 425
Query: 317 --CMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIH-RNPEIAQIAANHL-FE 372
++D+ + G + + + MP + N W +L+ +H + E+ I + +
Sbjct: 426 GSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR 484
Query: 373 LEPDKIGNYIILS 385
L+PD I +LS
Sbjct: 485 LKPDFISFTSLLS 497
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 83/180 (46%), Gaps = 2/180 (1%)
Query: 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182
+LI +Y+N A + +P ++++++ + ++I F RM G+
Sbjct: 54 AKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLI 113
Query: 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242
D L + CA+L K + ++ SG + V ++ MY +CG + DA
Sbjct: 114 PDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLD--MDAFVQGSMFHMYMRCGRMGDAR 171
Query: 243 RIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302
++F M ++V + S+++ +A G +++ +M + + N V++ G+L+ + G
Sbjct: 172 KVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSG 231
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Query: 3 SFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKAC 62
+ ++VF + KN W +L+ G+ + G K+ +S++ S+ R + P + ++L AC
Sbjct: 440 NLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSAC 499
Query: 63 TEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP-ERDVVS 121
+V G + G L + M+ + + G L + + EMP E D
Sbjct: 500 GQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCV 559
Query: 122 WTELIVA--YANNGDME--SAGGLFNELP 146
W L+ + NN D+ +A LF+ P
Sbjct: 560 WGALLNSCRLQNNVDLAEIAAEKLFHLEP 588
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 222/623 (35%), Positives = 329/623 (52%), Gaps = 84/623 (13%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPV-SFTLSALFKACTE 64
R VF+++ K+ LW +I GY +SI ++ + E + + TL + A E
Sbjct: 174 RKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAE 233
Query: 65 VLDVSLGQQIHA---------QTILLGGFTS---------------------DLYVGNTM 94
+ ++ LG QIH+ +L GF S D+ N M
Sbjct: 234 LQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAM 293
Query: 95 IGMYVKCGFLGCSRKVFDEM-------PERDVVSW------------------------- 122
I Y G S +F E+ +VS
Sbjct: 294 IHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSH 353
Query: 123 ----TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQY 178
T L Y+ ++ESA LF+E P K +W AM++GY QN +AI F MQ
Sbjct: 354 ASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQK 413
Query: 179 AGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSI 238
+ + VT+ ++SACAQLG + WV ++ + F +++ V +ALI MY+KCGSI
Sbjct: 414 SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFE--SSIYVSTALIGMYAKCGSI 471
Query: 239 DDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTAC 298
+A R+F M ++N ++++MI G+ +HG+ A+ +F +M+ + P VTF+ VL AC
Sbjct: 472 AEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYAC 531
Query: 299 SHVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGV 346
SH GL YG PS HYACMVD+LGRAG L+ AL+ +E M +EP V
Sbjct: 532 SHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSV 591
Query: 347 WGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406
W LLGAC+IH++ +A+ + LFEL+PD +G +++LSNI+++ + + VR+ K
Sbjct: 592 WETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKK 651
Query: 407 TGLKKNPGYSWLE-GDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVL 465
L K PGY+ +E G+ H F +GD +HP EI + L L +++ GYQP L
Sbjct: 652 RKLAKAPGYTLIEIGE--TPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELAL 709
Query: 466 YDVSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGRE 525
+DV +EE++ ++ HSE+LA+AFGL+ T PG +RI+KNLR+C DCH S++ R
Sbjct: 710 HDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERV 769
Query: 526 IVVRDNMRFHHFQDGKCSCGNYW 548
IVVRD RFHHF+DG CSCG+YW
Sbjct: 770 IVVRDANRFHHFKDGVCSCGDYW 792
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 163/360 (45%), Gaps = 47/360 (13%)
Query: 4 FPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRRE-GIGPVSFTLSALFKAC 62
+ R +F V+ + FL+ L+RG+ + S+S++ +R+ + P S T + A
Sbjct: 70 YARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAA 129
Query: 63 TEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSW 122
+ D G+ IH Q ++ G S+L +G+ ++ MY K + +RKVFD MPE+D + W
Sbjct: 130 SGFRDDRAGRVIHGQAVV-DGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILW 188
Query: 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYF-ERMQYAGV 181
M++GY +N E+I+ F + + +
Sbjct: 189 -------------------------------NTMISGYRKNEMYVESIQVFRDLINESCT 217
Query: 182 ETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDA 241
D TL+ ++ A A+L ++ + +A +G + V+ G I +YSKCG I
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTG--FISLYSKCGKIKMG 275
Query: 242 YRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301
+F ++ ++ +Y++MI G+ +G ++ LF +++ + + T + ++ H+
Sbjct: 276 SALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHL 335
Query: 302 GLKCYGV------SPSTDHYA---CMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLG 352
L Y + S H + + + + +E A K+ ++ P E + W A++
Sbjct: 336 ML-IYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESP-EKSLPSWNAMIS 393
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 187 TLVGVISACAQLGVIKYANWVCEIAEGSG----FGPINNVVVGSALIDMYSKCGSIDDAY 242
T +IS L K + + +A+ G N++ + + L S G+I A
Sbjct: 13 TTAALISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYAR 72
Query: 243 RIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVK-TETKPNGVTFIGVLTACS 299
IF+ +++ +VF ++ ++ GF+++ H+++ +F + K T+ KPN T+ ++A S
Sbjct: 73 DIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAAS 130
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/557 (36%), Positives = 314/557 (56%), Gaps = 47/557 (8%)
Query: 4 FPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT 63
R VF+ + ++ W +I Y +++ ++ MR EG FT+S++ AC
Sbjct: 114 LARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACG 173
Query: 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWT 123
D +++H ++ +LYVG ++ +Y KCG + + +VF+ M +
Sbjct: 174 VNCDALECKKLHCLSVK-TCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQD------- 225
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183
K V W++MV GYVQN EA+ + R Q +E
Sbjct: 226 ------------------------KSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQ 261
Query: 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243
+ TL VI AC+ L + + + SGFG +NV V S+ +DMY+KCGS+ ++Y
Sbjct: 262 NQFTLSSVICACSNLAALIEGKQMHAVICKSGFG--SNVFVASSAVDMYAKCGSLRESYI 319
Query: 244 IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL 303
IF ++++N+ ++++I GFA H R + LF M + PN VTF +L+ C H GL
Sbjct: 320 IFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGL 379
Query: 304 ------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL 351
YG+SP+ HY+CMVD+LGRAG L EA ++++ +P +P +WG+LL
Sbjct: 380 VEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLL 439
Query: 352 GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411
+C++++N E+A++AA LFELEP+ GN+++LSNIYA+ W+++++ R+LL+ +KK
Sbjct: 440 ASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKK 499
Query: 412 NPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDE 471
G SW++ + +H F G+ HP EI L +L+ + + GY+P++ L+DV
Sbjct: 500 VRGKSWID-IKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIG 558
Query: 472 EKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDN 531
+K+ +LM HSEKLAL FGL+ + VRIMKNLRIC DCH FM AS R I+VRD
Sbjct: 559 KKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDV 618
Query: 532 MRFHHFQDGKCSCGNYW 548
RFHHF DG CSCG++W
Sbjct: 619 NRFHHFSDGHCSCGDFW 635
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 149/333 (44%), Gaps = 40/333 (12%)
Query: 105 GCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNA 164
C K+ E DV LI AY+ G +E A +F+ + + V+W M+ Y +N
Sbjct: 82 ACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNR 141
Query: 165 KPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPIN---- 220
EA++ F M+ G + T+ V+SAC GV C+ E ++
Sbjct: 142 MESEALDIFLEMRNEGFKFSEFTISSVLSAC---GV------NCDALECKKLHCLSVKTC 192
Query: 221 ---NVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFG 277
N+ VG+AL+D+Y+KCG I DA ++F M+ ++ ++SSM+ G+ + A+ L+
Sbjct: 193 IDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYR 252
Query: 278 DMVKTETKPNGVTFIGVLTACS-----------HVGLKCYGVSPSTDHYACMVDLLGRAG 326
+ + N T V+ ACS H + G + + VD+ + G
Sbjct: 253 RAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCG 312
Query: 327 CLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFE------LEPDKIGN 380
L E+ + ++ E N +W ++ H P+ I LFE + P+++
Sbjct: 313 SLRESYIIFSEVQ-EKNLELWNTIISGFAKHARPKEVMI----LFEKMQQDGMHPNEVTF 367
Query: 381 YIILSNIYASAGMWDDVSRVRRLLKMT-GLKKN 412
+LS + G+ ++ R +L++ T GL N
Sbjct: 368 SSLLS-VCGHTGLVEEGRRFFKLMRTTYGLSPN 399
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/560 (37%), Positives = 327/560 (58%), Gaps = 26/560 (4%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHL--KDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
VF+++ +++ W +++ + Q +L K G+ P F SAL KAC +
Sbjct: 60 VFDEMPHRDHIAWASVLTA-LNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANL 118
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
+ G+Q+H I+ + +D V ++++ MY KCG L ++ VFD + ++ +SWT +
Sbjct: 119 GSIDHGRQVHCHFIV-SEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAM 177
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET-D 184
+ YA +G E A LF LP+K+ +WTA+++G+VQ+ K EA F M+ V+ D
Sbjct: 178 VSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILD 237
Query: 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
+ L ++ ACA L V + GF + V + +ALIDMY+KC + A I
Sbjct: 238 PLVLSSIVGACANLAASIAGRQVHGLVIALGFD--SCVFISNALIDMYAKCSDVIAAKDI 295
Query: 245 FVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL- 303
F M+ R+V S++S+I+G A HG+A A+ L+ DMV KPN VTF+G++ ACSHVG
Sbjct: 296 FSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFV 355
Query: 304 -----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLG 352
K YG+ PS HY C++DLLGR+G L+EA ++ MP P+ W ALL
Sbjct: 356 EKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLS 415
Query: 353 ACQIHRNPEIAQIAANHL---FELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409
AC+ ++ A+HL F+L+ YI+LSNIYASA +W VS RR L +
Sbjct: 416 ACKRQGRGQMGIRIADHLVSSFKLKDP--STYILLSNIYASASLWGKVSEARRKLGEMEV 473
Query: 410 KKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQ-ADGYQPNLRSVLYDV 468
+K+PG+S +E R F AG+ +HP +I + L L + ++ +GY P+ +L+D+
Sbjct: 474 RKDPGHSSVEV-RKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDM 532
Query: 469 SDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVV 528
++EK+++L HSE+ A+A+GLL PG +RI+KNLR+C DCH+ + S++ REI+V
Sbjct: 533 DEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIV 592
Query: 529 RDNMRFHHFQDGKCSCGNYW 548
RD R+HHF+ GKCSC ++W
Sbjct: 593 RDATRYHHFKGGKCSCNDFW 612
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 138/320 (43%), Gaps = 66/320 (20%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSI---------------------------- 37
+ VF+ ++ KN WTA++ GY G ++++
Sbjct: 160 KAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGL 219
Query: 38 ---SLYCSMRREGIGPVS-FTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNT 93
S++ MRRE + + LS++ AC + G+Q+H I L GF S +++ N
Sbjct: 220 EAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIAL-GFDSCVFISNA 278
Query: 94 MIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAW 153
+I MY KC + ++ +F M RDVVSWT LIV A +G E A L+++
Sbjct: 279 LIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDD--------- 329
Query: 154 TAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEG 213
M GV+ + VT VG+I AC+ +G ++ + + +
Sbjct: 330 ----------------------MVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQ-SMT 366
Query: 214 SGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK-QRNVFSYSSMILGFAMHGRAHAA 272
+G ++ + L+D+ + G +D+A + M + ++++++ GR
Sbjct: 367 KDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMG 426
Query: 273 IQLFGDMVKTETKPNGVTFI 292
I++ +V + + T+I
Sbjct: 427 IRIADHLVSSFKLKDPSTYI 446
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 39/221 (17%)
Query: 59 FKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERD 118
+ C ++ + +HA + LG + NT++ +Y KCG + +VFDEMP RD
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLG-IVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRD 68
Query: 119 VVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQY 178
++W ++ A N+ L K G +P
Sbjct: 69 HIAWASVLTA-------------LNQANLSGKTLSVFSSVGSSSGLRP------------ 103
Query: 179 AGVETDYVTLVGVISACAQLGVIKYANWV-CE--IAEGSGFGPINNVVVGSALIDMYSKC 235
D ++ ACA LG I + V C ++E + N+ VV S+L+DMY+KC
Sbjct: 104 -----DDFVFSALVKACANLGSIDHGRQVHCHFIVSEYA-----NDEVVKSSLVDMYAKC 153
Query: 236 GSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLF 276
G ++ A +F ++ +N S+++M+ G+A GR A++LF
Sbjct: 154 GLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELF 194
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/175 (20%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 216 FGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQL 275
G + + + L+++Y KCG+ A ++F M R+ +++S++ + + +
Sbjct: 32 LGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSV 91
Query: 276 FGDMVKTET-KPNGVTFIGVLTACSHVG-------LKCYGVSPSTDH----YACMVDLLG 323
F + + +P+ F ++ AC+++G + C+ + + + +VD+
Sbjct: 92 FSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYA 151
Query: 324 RAGCLEEALKMVEKMPVEPNGGVWGALL-GACQIHRNPEIAQIAANHLFELEPDK 377
+ G L A + + + V+ N W A++ G + R E A LF + P K
Sbjct: 152 KCGLLNSAKAVFDSIRVK-NTISWTAMVSGYAKSGRKEE-----ALELFRILPVK 200
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/569 (37%), Positives = 324/569 (56%), Gaps = 62/569 (10%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRRE-GIGPVSFTLSALFKACTE 64
R VF+ + + LW A+I GY H K+++ L+ M G+ S T++ + AC
Sbjct: 358 RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVR 417
Query: 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTE 124
S + IH ++ G D +V NT++ MY + G + + ++F +M +RD+
Sbjct: 418 SGAFSRKEAIHG-FVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDL----- 471
Query: 125 LIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQ------- 177
V W M+TGYV + +A+ +MQ
Sbjct: 472 --------------------------VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVS 505
Query: 178 ----YAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYS 233
++ + +TL+ ++ +CA L + + A + +V VGSAL+DMY+
Sbjct: 506 KGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLA--TDVAVGSALVDMYA 563
Query: 234 KCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIG 293
KCG + + ++F + Q+NV +++ +I+ + MHG AI L M+ KPN VTFI
Sbjct: 564 KCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFIS 623
Query: 294 VLTACSHVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVE 341
V ACSH G+ YGV PS+DHYAC+VDLLGRAG ++EA +++ MP +
Sbjct: 624 VFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 683
Query: 342 PN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRV 400
N G W +LLGA +IH N EI +IAA +L +LEP+ +Y++L+NIY+SAG+WD + V
Sbjct: 684 FNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEV 743
Query: 401 RRLLKMTGLKKNPGYSWLE-GDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQP 459
RR +K G++K PG SW+E GD +H+F AGD +HP S ++ L L +R++ +GY P
Sbjct: 744 RRNMKEQGVRKEPGCSWIEHGDE--VHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVP 801
Query: 460 NLRSVLYDVSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGAS 519
+ VL++V ++EK+ +L HSEKLA+AFG+L TSPG +R+ KNLR+C DCHL S
Sbjct: 802 DTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFIS 861
Query: 520 QVIGREIVVRDNMRFHHFQDGKCSCGNYW 548
+++ REI++RD RFH F++G CSCG+YW
Sbjct: 862 KIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 33/290 (11%)
Query: 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQI 74
++P W L+R + L++++ Y M GI P ++ AL KA ++ D+ LG+QI
Sbjct: 60 RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQI 119
Query: 75 HAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGD 134
HA G + V NT++ +Y KCG G KVFD + ER+ VSW LI + +
Sbjct: 120 HAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEK 179
Query: 135 MESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISA 194
E A+E F M VE TLV V++A
Sbjct: 180 WEM-------------------------------ALEAFRCMLDENVEPSSFTLVSVVTA 208
Query: 195 CAQLGVIKYANWVCEI-AEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNV 253
C+ L + + ++ A G G +N+ ++ + L+ MY K G + + + R++
Sbjct: 209 CSNLPMPEGLMMGKQVHAYGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDL 267
Query: 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL 303
++++++ + + A++ +MV +P+ T VL ACSH+ +
Sbjct: 268 VTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEM 317
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 152/346 (43%), Gaps = 49/346 (14%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVL- 66
VF+++ +N W +LI + ++ + M E + P SFTL ++ AC+ +
Sbjct: 155 VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM 214
Query: 67 --DVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTE 124
+ +G+Q+HA + G S ++ NT++ MY K G L S+ + RD+V+
Sbjct: 215 PEGLMMGKQVHAYGLRKGELNS--FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVT--- 269
Query: 125 LIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184
W +++ QN + EA+EY M GVE D
Sbjct: 270 ----------------------------WNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301
Query: 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
T+ V+ AC+ L +++ + A +G N VGSAL+DMY C + R+
Sbjct: 302 EFTISSVLPACSHLEMLRTGKELHAYALKNG-SLDENSFVGSALVDMYCNCKQVLSGRRV 360
Query: 245 FVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTE-TKPNGVTFIGVLTACSHVG- 302
F GM R + +++MI G++ + A+ LF M ++ N T GV+ AC G
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 420
Query: 303 ------LKCYGVSPSTDH----YACMVDLLGRAGCLEEALKMVEKM 338
+ + V D ++D+ R G ++ A+++ KM
Sbjct: 421 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/557 (36%), Positives = 323/557 (57%), Gaps = 55/557 (9%)
Query: 6 RLVFEQVKYKNPF--LWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT 63
R VFE+ + + ALI GY + D+ ++ M+ G+ S T+ L CT
Sbjct: 108 RKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCT 167
Query: 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWT 123
+ LG+ +H Q + GG S++ V N+ I MY+KCG + R+
Sbjct: 168 VPEYLWLGRSLHGQCVK-GGLDSEVAVLNSFITMYMKCGSVEAGRR-------------- 212
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183
LF+E+P+K + W A+++GY QN + +E +E+M+ +GV
Sbjct: 213 -----------------LFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCP 255
Query: 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243
D TLV V+S+CA LG K + V ++ E +GF P NV V +A I MY++CG++ A
Sbjct: 256 DPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVP--NVFVSNASISMYARCGNLAKARA 313
Query: 244 IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL 303
+F M +++ S+++MI + MHG + LF DM+K +P+G F+ VL+ACSH GL
Sbjct: 314 VFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGL 373
Query: 304 ------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL 351
+ Y + P +HY+C+VDLLGRAG L+EA++ +E MPVEP+G VWGALL
Sbjct: 374 TDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALL 433
Query: 352 GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411
GAC+IH+N ++A++A + E EP+ IG Y+++SNIY+ + + + R+R +++ +K
Sbjct: 434 GACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRK 493
Query: 412 NPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDE 471
PGYS++E +G +H F AGD +H + E+ + +LD L+ + L + E
Sbjct: 494 KPGYSYVE-HKGRVHLFLAGDRSHEQTEEVHR----MLDELETSVME--LAGNMDCDRGE 546
Query: 472 EKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDN 531
E HSE+LA+AFG+L + PG + ++KNLR+CEDCH+F+ S+++ R+ VVRD
Sbjct: 547 EVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDA 606
Query: 532 MRFHHFQDGKCSCGNYW 548
RFH+F+DG CSC +YW
Sbjct: 607 SRFHYFKDGVCSCKDYW 623
Score = 145 bits (367), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 190/410 (46%), Gaps = 52/410 (12%)
Query: 20 WTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTI 79
W +R Q +SISLY SM R G P +F+ + K+C + GQQ+H +
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCH-V 79
Query: 80 LLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAG 139
GG ++ +V +I MY KCG + +RKVF+E P+ +S
Sbjct: 80 TKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLS------------------ 121
Query: 140 GLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG 199
V + A+++GY N+K +A F RM+ GV D VT++G++ C
Sbjct: 122 -----------VCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCT--- 167
Query: 200 VIKYANWVCEIAEGSGF--GPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYS 257
V +Y W+ G G + V V ++ I MY KCGS++ R+F M + + +++
Sbjct: 168 VPEYL-WLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWN 226
Query: 258 SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK-----------CY 306
++I G++ +G A+ ++L+ M + P+ T + VL++C+H+G K
Sbjct: 227 AVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESN 286
Query: 307 GVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIA 366
G P+ + + R G L +A + + MPV+ W A++G +H EI +
Sbjct: 287 GFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVS-WTAMIGCYGMHGMGEIGLML 345
Query: 367 ANHLFE--LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPG 414
+ + + + PD ++LS + +G+ D + R +K K PG
Sbjct: 346 FDDMIKRGIRPDGAVFVMVLSAC-SHSGLTDKGLELFRAMKRE-YKLEPG 393
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/553 (36%), Positives = 308/553 (55%), Gaps = 47/553 (8%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
+F+++ ++ WTAL GY G +++I L+ M G+ P S+ + + AC V D
Sbjct: 168 LFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGD 227
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
+ G+ I + + + +V T++ +Y KCG
Sbjct: 228 LDSGEWI-VKYMEEMEMQKNSFVRTTLVNLYAKCG------------------------- 261
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187
ME A +F+ + KD V W+ M+ GY N+ P+E IE F +M ++ D +
Sbjct: 262 ------KMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFS 315
Query: 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247
+VG +S+CA LG + W + + F + N+ + +ALIDMY+KCG++ + +F
Sbjct: 316 IVGFLSSCASLGALDLGEWGISLIDRHEF--LTNLFMANALIDMYAKCGAMARGFEVFKE 373
Query: 248 MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---- 303
MK++++ ++ I G A +G + +FG K P+G TF+G+L C H GL
Sbjct: 374 MKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDG 433
Query: 304 -------KC-YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQ 355
C Y + + +HY CMVDL GRAG L++A +++ MP+ PN VWGALL C+
Sbjct: 434 LRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCR 493
Query: 356 IHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGY 415
+ ++ ++A+ L LEP GNY+ LSNIY+ G WD+ + VR ++ G+KK PGY
Sbjct: 494 LVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGY 553
Query: 416 SWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKR 475
SW+E + G +HEF A D +HP S +I L DL + ++ G+ P V +DV +EEK+R
Sbjct: 554 SWIELE-GKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKER 612
Query: 476 ILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFH 535
+L HSEKLA+A GL++T G +R++KNLR+C DCH M S++ REIVVRDN RFH
Sbjct: 613 VLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFH 672
Query: 536 HFQDGKCSCGNYW 548
F +G CSC +YW
Sbjct: 673 CFTNGSCSCNDYW 685
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 171/346 (49%), Gaps = 45/346 (13%)
Query: 4 FPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT 63
+ L+F ++ N FL+ +LI G++ +++ L+ S+R+ G+ FT + KACT
Sbjct: 63 YSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACT 122
Query: 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWT 123
LG +H+ + VKCGF DV + T
Sbjct: 123 RASSRKLGIDLHS--------------------LVVKCGF------------NHDVAAMT 150
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183
L+ Y+ +G + A LF+E+P + V WTA+ +GY + + REAI+ F++M GV+
Sbjct: 151 SLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKP 210
Query: 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243
D +V V+SAC +G + W+ + E N V + L+++Y+KCG ++ A
Sbjct: 211 DSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQ--KNSFVRTTLVNLYAKCGKMEKARS 268
Query: 244 IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG- 302
+F M ++++ ++S+MI G+A + I+LF M++ KP+ + +G L++C+ +G
Sbjct: 269 VFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGA 328
Query: 303 --LKCYGVSPSTDH--------YACMVDLLGRAGCLEEALKMVEKM 338
L +G+S H ++D+ + G + ++ ++M
Sbjct: 329 LDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEM 374
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 119/283 (42%), Gaps = 42/283 (14%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R VF+ + K+ W+ +I+GY K+ I L+ M +E + P F++ +C +
Sbjct: 267 RSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASL 326
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
+ LG+ I F ++L++ N +I MY KCG + +VF EM E+D+
Sbjct: 327 GALDLGEW-GISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDI------ 379
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
V A ++G +N + + F + + G+ D
Sbjct: 380 -------------------------VIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDG 414
Query: 186 VTLVGVISACAQLGVI----KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDA 241
T +G++ C G+I ++ N + + + V ++D++ + G +DDA
Sbjct: 415 STFLGLLCGCVHAGLIQDGLRFFNAISCV-----YALKRTVEHYGCMVDLWGRAGMLDDA 469
Query: 242 YRIFVGMKQR-NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTE 283
YR+ M R N + +++ G + A + +++ E
Sbjct: 470 YRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALE 512
Score = 39.3 bits (90), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSH 300
+Y +F + N+F Y+S+I GF + H + LF + K +G TF VL AC+
Sbjct: 64 SYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTR 123
Query: 301 VGLKCYGVSPST-------DH-YACMVDLL---GRAGCLEEALKMVEKMPVEPNGGVWGA 349
+ G+ + +H A M LL +G L +A K+ +++P + + W A
Sbjct: 124 ASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIP-DRSVVTWTA 182
Query: 350 LLG 352
L
Sbjct: 183 LFS 185
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/558 (36%), Positives = 315/558 (56%), Gaps = 51/558 (9%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R V +++ KN WTA+I Y GH ++++++ M R P FT + + +C
Sbjct: 107 RKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRA 166
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
+ LG+QIH I+ + S ++VG++++ MY K G + +R++
Sbjct: 167 SGLGLGKQIHG-LIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREI--------------- 210
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
F LP +D V+ TA++ GY Q EA+E F R+ G+ +Y
Sbjct: 211 ----------------FECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNY 254
Query: 186 VTLVGVISACAQLGVIKYANWV-CEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
VT +++A + L ++ + C + P V+ S LIDMYSKCG++ A R+
Sbjct: 255 VTYASLLTALSGLALLDHGKQAHCHVLRREL--PFYAVLQNS-LIDMYSKCGNLSYARRL 311
Query: 245 FVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMV-KTETKPNGVTFIGVLTACSH--- 300
F M +R S+++M++G++ HG ++LF M + KP+ VT + VL+ CSH
Sbjct: 312 FDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRM 371
Query: 301 --VGLKC--------YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGAL 350
GL YG P T+HY C+VD+LGRAG ++EA + +++MP +P GV G+L
Sbjct: 372 EDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSL 431
Query: 351 LGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410
LGAC++H + +I + L E+EP+ GNY+ILSN+YASAG W DV+ VR ++ +
Sbjct: 432 LGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVT 491
Query: 411 KNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSD 470
K PG SW++ ++ +H F A D THP E+ + ++ +++ GY P+L VLYDV +
Sbjct: 492 KEPGRSWIQHEQ-TLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDE 550
Query: 471 EEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRD 530
E+K+++L+ HSEKLAL FGL+ T G +R+ KNLRIC DCH F S+V RE+ +RD
Sbjct: 551 EQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRD 610
Query: 531 NMRFHHFQDGKCSCGNYW 548
RFH DG CSCG+YW
Sbjct: 611 KNRFHQIVDGICSCGDYW 628
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 73/125 (58%), Gaps = 11/125 (8%)
Query: 226 SALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK 285
+ L+ Y KC ++DA ++ M ++NV S+++MI ++ G + A+ +F +M++++ K
Sbjct: 91 TRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGK 150
Query: 286 PNGVTFIGVLTACSH-----VGLKCYG--VSPSTDHY----ACMVDLLGRAGCLEEALKM 334
PN TF VLT+C +G + +G V + D + + ++D+ +AG ++EA ++
Sbjct: 151 PNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREI 210
Query: 335 VEKMP 339
E +P
Sbjct: 211 FECLP 215
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/542 (36%), Positives = 317/542 (58%), Gaps = 18/542 (3%)
Query: 20 WTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTI 79
+ A+I GY+ +G ++++ + M GI FT ++ +AC + LG+Q+HA +
Sbjct: 254 YNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVL 313
Query: 80 LLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAG 139
F+ + N+++ +Y KCG +R +F++MP +D+VSW L+ Y ++G + A
Sbjct: 314 RREDFS--FHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAK 371
Query: 140 GLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG 199
+F E+ K+ ++W M++G +N E ++ F M+ G E G I +CA LG
Sbjct: 372 LIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLG 431
Query: 200 VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSM 259
Y N A+ G +++ G+ALI MY+KCG +++A ++F M + S++++
Sbjct: 432 A--YCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNAL 489
Query: 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL------------KCYG 307
I HG A+ ++ +M+K +P+ +T + VLTACSH GL Y
Sbjct: 490 IAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYR 549
Query: 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAA 367
+ P DHYA ++DLL R+G +A ++E +P +P +W ALL C++H N E+ IAA
Sbjct: 550 IPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAA 609
Query: 368 NHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDRGVIHE 427
+ LF L P+ G Y++LSN++A+ G W++V+RVR+L++ G+KK SW+E + V H
Sbjct: 610 DKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQV-HT 668
Query: 428 FRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDV-SDEEKKRILMTHSEKLAL 486
F D +HP + + L DL ++ GY P+ VL+DV SD K+ +L THSEK+A+
Sbjct: 669 FLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAV 728
Query: 487 AFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFHHFQDGKCSCGN 546
AFGL+ PG T+RI KNLR C DCH F S V+ R+I++RD RFHHF++G+CSCGN
Sbjct: 729 AFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGN 788
Query: 547 YW 548
+W
Sbjct: 789 FW 790
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 119/443 (26%), Positives = 195/443 (44%), Gaps = 54/443 (12%)
Query: 3 SFPRLVFEQ--VKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFK 60
+ R VFE+ V ++ ++ A+I G+ +I+L+C M+ EG P +FT +++
Sbjct: 97 TLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLA 156
Query: 61 ACTEVLDVSLG-QQIHAQTILLG-GFTSDLYVGNTMIGMYVKCG----FLGCSRKVFDEM 114
V D Q HA + G G+ + V N ++ +Y KC L +RKVFDE+
Sbjct: 157 GLALVADDEKQCVQFHAAALKSGAGYITS--VSNALVSVYSKCASSPSLLHSARKVFDEI 214
Query: 115 PERDVVSWTELIVAYANNGDMESAGGLFNELPLKDK-VAWTAMVTGYVQNAKPREAIEYF 173
E+D SWT ++ Y NG + L + K VA+ AM++GYV +EA+E
Sbjct: 215 LEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMV 274
Query: 174 ERMQYAGVETDYVTLVGVISACAQLGVIKYANWV-CEIAEGSGFG--------------- 217
RM +G+E D T VI ACA G+++ V + F
Sbjct: 275 RRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCG 334
Query: 218 ------------PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAM 265
P ++V +AL+ Y G I +A IF MK++N+ S+ MI G A
Sbjct: 335 KFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAE 394
Query: 266 HGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKC-----------YGVSPSTDH 314
+G ++LF M + +P F G + +C+ +G C G S
Sbjct: 395 NGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSA 454
Query: 315 YACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFE-- 372
++ + + G +EEA ++ MP + W AL+ A H + A + +
Sbjct: 455 GNALITMYAKCGVVEEARQVFRTMPC-LDSVSWNALIAALGQHGHGAEAVDVYEEMLKKG 513
Query: 373 LEPDKIGNYIILSNIYASAGMWD 395
+ PD+I +L+ + AG+ D
Sbjct: 514 IRPDRITLLTVLTAC-SHAGLVD 535
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 124/281 (44%), Gaps = 46/281 (16%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
+L+F+++K KN W +I G G ++ + L+ M+REG P + S K+C +
Sbjct: 371 KLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVL 430
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
GQQ HAQ + + GF S L GN +I MY KCG + +R+VF MP D VSW L
Sbjct: 431 GAYCNGQQYHAQLLKI-GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNAL 489
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
I A +G EA++ +E M G+ D
Sbjct: 490 IAALGQHG-------------------------------HGAEAVDVYEEMLKKGIRPDR 518
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVG----SALIDMYSKCGSIDDA 241
+TL+ V++AC+ G++ + E + + G + LID+ + G DA
Sbjct: 519 ITLLTVLTACSHAGLVDQGRKYFDSME-----TVYRIPPGADHYARLIDLLCRSGKFSDA 573
Query: 242 YRIFVGMKQRNVFS-YSSMILGFAMHGRAH----AAIQLFG 277
+ + + + +++ G +HG AA +LFG
Sbjct: 574 ESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFG 614
Score = 99.0 bits (245), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 151/336 (44%), Gaps = 59/336 (17%)
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
+ L + +H I G F ++ N +I +Y K L +R++FDE+ E D ++ T ++
Sbjct: 30 LQLARAVHGNIITFG-FQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVS 88
Query: 128 AYANNGDMESAGGLFNELP--LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
Y +GD+ A G+F + P ++D V + AM+TG+ N AI F +M++ G + D
Sbjct: 89 GYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDN 148
Query: 186 VTLVGVISACAQLGVIKYANWVC----EIAEGSGFGPINNVVVGSALIDMYSKCGS---- 237
T V+ A L ++ C A SG G I + V +AL+ +YSKC S
Sbjct: 149 FTFASVL---AGLALVADDEKQCVQFHAAALKSGAGYITS--VSNALVSVYSKCASSPSL 203
Query: 238 IDDAYRIFVGMKQRN--------------------------------VFSYSSMILGFAM 265
+ A ++F + +++ + +Y++MI G+
Sbjct: 204 LHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVN 263
Query: 266 HGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG------VSPSTD---HY- 315
G A+++ MV + + + T+ V+ AC+ GL G V D H+
Sbjct: 264 RGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFD 323
Query: 316 ACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL 351
+V L + G +EA + EKMP + + W ALL
Sbjct: 324 NSLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALL 358
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/554 (37%), Positives = 314/554 (56%), Gaps = 47/554 (8%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
VF+++ ++ W ++I+ Y L +ISL+ MR I P TL +L +++ D
Sbjct: 304 VFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGD 363
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
+ + + T+ G F D+ +GN ++ MY K G +
Sbjct: 364 IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLV----------------------- 400
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG-VETDYV 186
+SA +FN LP D ++W +++GY QN EAIE + M+ G + +
Sbjct: 401 --------DSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQG 452
Query: 187 TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFV 246
T V V+ AC+Q G ++ + +G +V V ++L DMY KCG ++DA +F
Sbjct: 453 TWVSVLPACSQAGALRQGMKLHGRLLKNGL--YLDVFVVTSLADMYGKCGRLEDALSLFY 510
Query: 247 GMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL--- 303
+ + N ++++I HG A+ LF +M+ KP+ +TF+ +L+ACSH GL
Sbjct: 511 QIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDE 570
Query: 304 ---------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGAC 354
YG++PS HY CMVD+ GRAG LE ALK ++ M ++P+ +WGALL AC
Sbjct: 571 GQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSAC 630
Query: 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPG 414
++H N ++ +IA+ HLFE+EP+ +G +++LSN+YASAG W+ V +R + GL+K PG
Sbjct: 631 RVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPG 690
Query: 415 YSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKK 474
+S +E D V F G+ THP E+ + L L +L+ GY P+ R VL DV D+EK+
Sbjct: 691 WSSMEVDNKV-EVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKE 749
Query: 475 RILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRF 534
ILM+HSE+LA+AF L+ T T+RI KNLR+C DCH S++ REI+VRD+ RF
Sbjct: 750 HILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRF 809
Query: 535 HHFQDGKCSCGNYW 548
HHF++G CSCG+YW
Sbjct: 810 HHFKNGVCSCGDYW 823
Score = 142 bits (357), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 198/408 (48%), Gaps = 59/408 (14%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R++F+++ ++ W A+I GY G+ K++++L +R S T+ +L ACTE
Sbjct: 205 RILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMD----SVTVVSLLSACTEA 260
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
D + G IH+ +I G S+L+V N +I +Y + G L +KV
Sbjct: 261 GDFNRGVTIHSYSIK-HGLESELFVSNKLIDLYAEFGRLRDCQKV--------------- 304
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
F+ + ++D ++W +++ Y N +P AI F+ M+ + ++ D
Sbjct: 305 ----------------FDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDC 348
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGP---INNVVVGSALIDMYSKCGSIDDAY 242
+TL+ + S +QLG I+ C +G + ++ +G+A++ MY+K G +D A
Sbjct: 349 LTLISLASILSQLGDIR----ACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSAR 404
Query: 243 RIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT-ETKPNGVTFIGVLTACSHV 301
+F + +V S++++I G+A +G A AI+++ M + E N T++ VL ACS
Sbjct: 405 AVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQA 464
Query: 302 -----GLKCYGVSPSTDHY------ACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGAL 350
G+K +G Y + D+ G+ G LE+AL + ++P N W L
Sbjct: 465 GALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTL 523
Query: 351 LGACQIHRNPEIAQIAANHLFE--LEPDKIGNYIILSNIYASAGMWDD 396
+ H + E A + + + ++PD I ++ L + + +G+ D+
Sbjct: 524 IACHGFHGHGEKAVMLFKEMLDEGVKPDHI-TFVTLLSACSHSGLVDE 570
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 132/283 (46%), Gaps = 25/283 (8%)
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFER-MQYAGVE 182
+L+ Y G++ A F+ + +D AW M++GY + E I F M +G+
Sbjct: 91 KLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLT 150
Query: 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242
DY T V+ AC VI C + FG + +V V ++LI +YS+ ++ +A
Sbjct: 151 PDYRTFPSVLKACRT--VIDGNKIHCLALK---FGFMWDVYVAASLIHLYSRYKAVGNAR 205
Query: 243 RIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302
+F M R++ S+++MI G+ G A A+ L + ++ VT + +L+AC+ G
Sbjct: 206 ILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDS----VTVVSLLSACTEAG 261
Query: 303 LKCYGV---SPSTDH--------YACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL 351
GV S S H ++DL G L + K+ ++M V + W +++
Sbjct: 262 DFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVR-DLISWNSII 320
Query: 352 GACQIHRNP--EIAQIAANHLFELEPDKIGNYIILSNIYASAG 392
A +++ P I+ L ++PD + I L++I + G
Sbjct: 321 KAYELNEQPLRAISLFQEMRLSRIQPDCL-TLISLASILSQLG 362
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/559 (35%), Positives = 322/559 (57%), Gaps = 48/559 (8%)
Query: 3 SFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKAC 62
S+ R +FE + + ++ ++ RGY + + SL+ + +GI P ++T +L KAC
Sbjct: 80 SYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKAC 139
Query: 63 TEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSW 122
+ G+Q+H ++ LG ++YV T+I MY +C + +R VFD + E VV
Sbjct: 140 AVAKALEEGRQLHCLSMKLG-LDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVV-- 196
Query: 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182
+ AM+TGY + +P EA+ F MQ ++
Sbjct: 197 -----------------------------CYNAMITGYARRNRPNEALSLFREMQGKYLK 227
Query: 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242
+ +TL+ V+S+CA LG + W+ + A+ F V V +ALIDM++KCGS+DDA
Sbjct: 228 PNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF--CKYVKVNTALIDMFAKCGSLDDAV 285
Query: 243 RIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302
IF M+ ++ ++S+MI+ +A HG+A ++ +F M +P+ +TF+G+L ACSH G
Sbjct: 286 SIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTG 345
Query: 303 ------------LKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGAL 350
+ +G+ PS HY MVDLL RAG LE+A + ++K+P+ P +W L
Sbjct: 346 RVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRIL 405
Query: 351 LGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410
L AC H N ++A+ + +FEL+ G+Y+ILSN+YA W+ V +R+++K
Sbjct: 406 LAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAV 465
Query: 411 KNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLY-DVS 469
K PG S +E + V+HEF +GD +T++ +AL +++ L+ GY P+ V++ +++
Sbjct: 466 KVPGCSSIEVN-NVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMN 524
Query: 470 DEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVR 529
D+EK+ L HSEKLA+ FGLL T PG T+R++KNLR+C DCH S + GR++V+R
Sbjct: 525 DQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLR 584
Query: 530 DNMRFHHFQDGKCSCGNYW 548
D RFHHF+DGKCSCG++W
Sbjct: 585 DVQRFHHFEDGKCSCGDFW 603
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 126/276 (45%), Gaps = 20/276 (7%)
Query: 120 VSWTELIVAYANNGDMES----AGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFER 175
VS+ ++ + ES A LF + D V + +M GY + P E F
Sbjct: 60 VSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVE 119
Query: 176 MQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKC 235
+ G+ D T ++ ACA ++ + ++ G +NV V LI+MY++C
Sbjct: 120 ILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLD--DNVYVCPTLINMYTEC 177
Query: 236 GSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295
+D A +F + + V Y++MI G+A R + A+ LF +M KPN +T + VL
Sbjct: 178 EDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVL 237
Query: 296 TACSHVG-------LKCYGVSPSTDHY----ACMVDLLGRAGCLEEALKMVEKMPVEPNG 344
++C+ +G + Y S Y ++D+ + G L++A+ + EKM + +
Sbjct: 238 SSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DT 296
Query: 345 GVWGALLGACQIHRNPEIAQIAANHLF--ELEPDKI 378
W A++ A H E + + + ++PD+I
Sbjct: 297 QAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEI 332
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/553 (37%), Positives = 307/553 (55%), Gaps = 61/553 (11%)
Query: 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQI 74
K+ W A+I+G G K++I + M+ +G+ + ++ AC + ++ G+QI
Sbjct: 233 KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQI 292
Query: 75 HAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGD 134
HA I+ F +YVG+ +I MY KC L ++ VFD M +++VVS
Sbjct: 293 HA-CIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS------------- 338
Query: 135 MESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISA 194
WTAMV GY Q + EA++ F MQ +G++ D+ TL ISA
Sbjct: 339 ------------------WTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISA 380
Query: 195 CAQLGVIKYANWVCEIAEGSGF-------GPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247
CA V + EGS F G I+ V V ++L+ +Y KCG IDD+ R+F
Sbjct: 381 CAN---------VSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE 431
Query: 248 MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---- 303
M R+ S+++M+ +A GRA IQLF MV+ KP+GVT GV++ACS GL
Sbjct: 432 MNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKG 491
Query: 304 --------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQ 355
YG+ PS HY+CM+DL R+G LEEA++ + MP P+ W LL AC+
Sbjct: 492 QRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACR 551
Query: 356 IHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGY 415
N EI + AA L EL+P Y +LS+IYAS G WD V+++RR ++ +KK PG
Sbjct: 552 NKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQ 611
Query: 416 SWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKR 475
SW++ +G +H F A D + P +I L +L +++ +GY+P+ V +DV + K +
Sbjct: 612 SWIKW-KGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVK 670
Query: 476 ILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFH 535
+L HSE+LA+AFGL+ G +R+ KNLR+C DCH S V GREI+VRD +RFH
Sbjct: 671 MLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFH 730
Query: 536 HFQDGKCSCGNYW 548
F+DG CSCG++W
Sbjct: 731 RFKDGTCSCGDFW 743
Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 200/385 (51%), Gaps = 19/385 (4%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVS-FTLSALFKACTEVL 66
FE++ ++ W LI GY L G + ++ Y +M R+ ++ TL + K +
Sbjct: 94 TFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNG 153
Query: 67 DVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELI 126
VSLG+QIH Q I LG F S L VG+ ++ MY G + ++KVF + +R+ V + L+
Sbjct: 154 HVSLGKQIHGQVIKLG-FESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLM 212
Query: 127 VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYV 186
G +E A LF + KD V+W AM+ G QN +EAIE F M+ G++ D
Sbjct: 213 GGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQY 271
Query: 187 TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFV 246
V+ AC LG I + + F +++ VGSALIDMY KC + A +F
Sbjct: 272 PFGSVLPACGGLGAINEGKQIHACIIRTNFQ--DHIYVGSALIDMYCKCKCLHYAKTVFD 329
Query: 247 GMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV----- 301
MKQ+NV S+++M++G+ GRA A+++F DM ++ P+ T ++AC++V
Sbjct: 330 RMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEE 389
Query: 302 GLKCYG--VSPSTDHYAC----MVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA-C 354
G + +G ++ HY +V L G+ G ++++ ++ +M V + W A++ A
Sbjct: 390 GSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWTAMVSAYA 448
Query: 355 QIHRNPEIAQIAANHLFE-LEPDKI 378
Q R E Q+ + L+PD +
Sbjct: 449 QFGRAVETIQLFDKMVQHGLKPDGV 473
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 125/245 (51%), Gaps = 33/245 (13%)
Query: 4 FPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT 63
+ + VF+++K KN WTA++ GY G ++++ ++ M+R GI P +TL AC
Sbjct: 323 YAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACA 382
Query: 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWT 123
V + G Q H + I G + V N+++ +Y KCG + S ++F+EM RD VSWT
Sbjct: 383 NVSSLEEGSQFHGKAI-TSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWT 441
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183
++ AYA G + E I+ F++M G++
Sbjct: 442 AMVSAYAQFG-------------------------------RAVETIQLFDKMVQHGLKP 470
Query: 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243
D VTL GVISAC++ G+++ ++ S +G + ++ S +ID++S+ G +++A R
Sbjct: 471 DGVTLTGVISACSRAGLVEKGQRYFKLMT-SEYGIVPSIGHYSCMIDLFSRSGRLEEAMR 529
Query: 244 IFVGM 248
GM
Sbjct: 530 FINGM 534
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 135/322 (41%), Gaps = 46/322 (14%)
Query: 87 DLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELP 146
+ ++ N ++ Y +R+VFD +P+ ++ SW L++AY+ G + F +LP
Sbjct: 40 ETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLP 99
Query: 147 LKDKVAWTAMVTGYVQNAKPREAIE-YFERMQYAGVETDYVTLVGVISACAQLGVIKYAN 205
+D V W ++ GY + A++ Y M+ VTL+ ++ + G +
Sbjct: 100 DRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGK 159
Query: 206 WVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSS------- 258
+ GF + ++VGS L+ MY+ G I DA ++F G+ RN Y+S
Sbjct: 160 QIHGQVIKLGFE--SYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLA 217
Query: 259 -----------------------MILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295
MI G A +G A AI+ F +M K + F VL
Sbjct: 218 CGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277
Query: 296 TACSHVGL--------KCYGVSPSTDHY---ACMVDLLGRAGCLEEALKMVEKMPVEPNG 344
AC +G C + DH + ++D+ + CL A + ++M + N
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMK-QKNV 336
Query: 345 GVWGAL-LGACQIHRNPEIAQI 365
W A+ +G Q R E +I
Sbjct: 337 VSWTAMVVGYGQTGRAEEAVKI 358
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 210/562 (37%), Positives = 313/562 (55%), Gaps = 59/562 (10%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R +F+++ +N W A I + G +++I + RR P S T A AC++
Sbjct: 163 RKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDW 222
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
L ++LG Q+H +L GF +D+ V N +I Y KC
Sbjct: 223 LHLNLGMQLHG-LVLRSGFDTDVSVCNGLIDFYGKCK----------------------- 258
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
+ S+ +F E+ K+ V+W ++V YVQN + +A + R + VET
Sbjct: 259 --------QIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSD 310
Query: 186 VTLVGVISACA-----QLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240
+ V+SACA +LG +A+ V E + F VGSAL+DMY KCG I+D
Sbjct: 311 FMISSVLSACAGMAGLELGRSIHAHAVKACVERTIF-------VGSALVDMYGKCGCIED 363
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTE--TKPNGVTFIGVLTAC 298
+ + F M ++N+ + +S+I G+A G+ A+ LF +M PN +TF+ +L+AC
Sbjct: 364 SEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSAC 423
Query: 299 SHVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGV 346
S G YG+ P +HY+C+VD+LGRAG +E A + ++KMP++P V
Sbjct: 424 SRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISV 483
Query: 347 WGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406
WGAL AC++H P++ +AA +LF+L+P GN+++LSN +A+AG W + + VR LK
Sbjct: 484 WGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKG 543
Query: 407 TGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLY 466
G+KK GYSW+ + +H F+A D +H + EIQ L L + ++A GY+P+L+ LY
Sbjct: 544 VGIKKGAGYSWITV-KNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLY 602
Query: 467 DVSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREI 526
D+ +EEK + HSEKLALAFGLL+ +RI KNLRIC DCH F S + REI
Sbjct: 603 DLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREI 662
Query: 527 VVRDNMRFHHFQDGKCSCGNYW 548
+VRDN RFH F+DG CSC +YW
Sbjct: 663 IVRDNNRFHRFKDGICSCKDYW 684
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 154/358 (43%), Gaps = 46/358 (12%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
RLV +N WT+LI G GH ++ + MRREG+ P FT FKA +
Sbjct: 62 RLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASL 121
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
G+QIHA + G D++VG + MY K +RK+FDE+PER++ +
Sbjct: 122 RLPVTGKQIHALAVKCGRIL-DVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLET---- 176
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
W A ++ V + +PREAIE F + +
Sbjct: 177 ---------------------------WNAFISNSVTDGRPREAIEAFIEFRRIDGHPNS 209
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
+T ++AC+ + + + SGF +V V + LID Y KC I + IF
Sbjct: 210 ITFCAFLNACSDWLHLNLGMQLHGLVLRSGFD--TDVSVCNGLIDFYGKCKQIRSSEIIF 267
Query: 246 VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG--- 302
M +N S+ S++ + + A L+ K + + VL+AC+ +
Sbjct: 268 TEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLE 327
Query: 303 ----LKCYGVSPSTDHY----ACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLG 352
+ + V + + +VD+ G+ GC+E++ + ++MP E N +L+G
Sbjct: 328 LGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLVTRNSLIG 384
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 146/352 (41%), Gaps = 48/352 (13%)
Query: 54 TLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDE 113
L L K + LG+ +HA+ + ++ N +I MY K +R V
Sbjct: 8 ALGLLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRL 67
Query: 114 MPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYF 173
P R+VVS WT++++G QN A+ F
Sbjct: 68 TPARNVVS-------------------------------WTSLISGLAQNGHFSTALVEF 96
Query: 174 ERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYS 233
M+ GV + T A A L + + +A G I +V VG + DMY
Sbjct: 97 FEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCG--RILDVFVGCSAFDMYC 154
Query: 234 KCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIG 293
K DDA ++F + +RN+ ++++ I GR AI+ F + + + PN +TF
Sbjct: 155 KTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCA 214
Query: 294 VLTACS-----HVGLKCYGV----SPSTDHYAC--MVDLLGRAGCLEEALKMVEKMPVEP 342
L ACS ++G++ +G+ TD C ++D G+ + + + +M +
Sbjct: 215 FLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTK- 273
Query: 343 NGGVWGALLGA-CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGM 393
N W +L+ A Q H + + + + ++ + +++I S + A AGM
Sbjct: 274 NAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIV--ETSDFMISSVLSACAGM 323
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/541 (36%), Positives = 304/541 (56%), Gaps = 47/541 (8%)
Query: 20 WTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTI 79
W A++ GY ++ L+ M ++G FTL+ +FK C + ++ G+Q+HA I
Sbjct: 485 WNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAI 544
Query: 80 LLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAG 139
G+ DL+V + ++ MYVKCG DM +A
Sbjct: 545 K-SGYDLDLWVSSGILDMYVKCG-------------------------------DMSAAQ 572
Query: 140 GLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG 199
F+ +P+ D VAWT M++G ++N + A F +M+ GV D T+ + A + L
Sbjct: 573 FAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLT 632
Query: 200 VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSM 259
++ + A N+ VG++L+DMY+KCGSIDDAY +F ++ N+ ++++M
Sbjct: 633 ALEQGRQIH--ANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAM 690
Query: 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKC------------YG 307
++G A HG +QLF M KP+ VTFIGVL+ACSH GL YG
Sbjct: 691 LVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYG 750
Query: 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAA 367
+ P +HY+C+ D LGRAG +++A ++E M +E + ++ LL AC++ + E + A
Sbjct: 751 IKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVA 810
Query: 368 NHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDRGVIHE 427
L ELEP Y++LSN+YA+A WD++ R ++K +KK+PG+SW+E + IH
Sbjct: 811 TKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEV-KNKIHI 869
Query: 428 FRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRILMTHSEKLALA 487
F D ++ + I + + D++ ++ +GY P L DV +EEK+R L HSEKLA+A
Sbjct: 870 FVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVA 929
Query: 488 FGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFHHFQDGKCSCGNY 547
FGLL+T P +R++KNLR+C DCH M ++V REIV+RD RFH F+DG CSCG+Y
Sbjct: 930 FGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDY 989
Query: 548 W 548
W
Sbjct: 990 W 990
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 166/396 (41%), Gaps = 50/396 (12%)
Query: 4 FPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT 63
F R VF+ + ++ W ++I G G +++ L+ + R G+ P +T++++ KA +
Sbjct: 368 FARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427
Query: 64 EVLD-VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSW 122
+ + +SL +Q+H I + SD +V
Sbjct: 428 SLPEGLSLSKQVHVHAIKINN-VSDSFVS------------------------------- 455
Query: 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182
T LI AY+ N M+ A LF D VAW AM+ GY Q+ + ++ F M G
Sbjct: 456 TALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGER 514
Query: 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242
+D TL V C L I V A SG+ ++ V S ++DMY KCG + A
Sbjct: 515 SDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDL--DLWVSSGILDMYVKCGDMSAAQ 572
Query: 243 RIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS--- 299
F + + ++++MI G +G A +F M P+ T + A S
Sbjct: 573 FAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLT 632
Query: 300 ------HVGLKCYGVSPSTDHY--ACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL 351
+ ++ + D + +VD+ + G +++A + +++ + N W A+L
Sbjct: 633 ALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAML 691
Query: 352 -GACQIHRNPEIAQIAAN-HLFELEPDKIGNYIILS 385
G Q E Q+ ++PDK+ +LS
Sbjct: 692 VGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLS 727
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 124/282 (43%), Gaps = 45/282 (15%)
Query: 3 SFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKAC 62
S + F+ + + WT +I G I G + + ++ MR G+ P FT++ L KA
Sbjct: 569 SAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKAS 628
Query: 63 TEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSW 122
+ + + G+QIHA + L T+D +VG +++ MY KCG + + +F + ++ +W
Sbjct: 629 SCLTALEQGRQIHANALKLNC-TNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAW 687
Query: 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182
++V G Q+ + +E ++ F++M+ G++
Sbjct: 688 NAMLV-------------------------------GLAQHGEGKETLQLFKQMKSLGIK 716
Query: 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242
D VT +GV+SAC+ G++ A G +G + S L D + G + A
Sbjct: 717 PDKVTFIGVLSACSHSGLVSEAYKHMRSMHGD-YGIKPEIEHYSCLADALGRAGLVKQA- 774
Query: 243 RIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTET 284
N+ SM +M+ AA ++ GD TET
Sbjct: 775 --------ENLIESMSMEASASMYRTLLAACRVQGD---TET 805
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 133/350 (38%), Gaps = 68/350 (19%)
Query: 27 YILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTS 86
Y+ G + + M + T + +V ++LGQQ+H + LG
Sbjct: 290 YLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLG-LDL 348
Query: 87 DLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELP 146
L V N++I MY K G +R VFD M ERD++S
Sbjct: 349 MLTVSNSLINMYCKLRKFGFARTVFDNMSERDLIS------------------------- 383
Query: 147 LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANW 206
W +++ G QN EA+ F ++ G++ D T+ V+ A + L
Sbjct: 384 ------WNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSL-------- 429
Query: 207 VCEIAEGSGFG--------PINNV---VVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFS 255
EG INNV V +ALID YS+ + +A I ++ +
Sbjct: 430 ----PEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEA-EILFERHNFDLVA 484
Query: 256 YSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV-------GLKCYGV 308
+++M+ G+ H ++LF M K + + T V C + + Y +
Sbjct: 485 WNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAI 544
Query: 309 SPSTDH----YACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGAC 354
D + ++D+ + G + A + +PV P+ W ++ C
Sbjct: 545 KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGC 593
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 33/227 (14%)
Query: 67 DVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELI 126
D+ LG+ HA+ IL + ++ N +I MY KCG L +R+VFD+MP+RD+VSW ++
Sbjct: 54 DLMLGKCTHAR-ILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSIL 112
Query: 127 VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYV 186
AYA + + V+N + +A F ++ V T +
Sbjct: 113 AAYAQSSEC------------------------VVENIQ--QAFLLFRILRQDVVYTSRM 146
Query: 187 TLVGVISACAQLGVIKYANWVCEIAEGSG--FGPINNVVVGSALIDMYSKCGSIDDAYRI 244
TL ++ C G + W E G G + V AL+++Y K G + + +
Sbjct: 147 TLSPMLKLCLHSGYV----WASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVL 202
Query: 245 FVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTF 291
F M R+V ++ M+ + G AI L + PN +T
Sbjct: 203 FEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/306 (18%), Positives = 115/306 (37%), Gaps = 75/306 (24%)
Query: 3 SFPRLVFEQVKYKNPFLWTALIRGYILQG-----HLKDSISLYCSMRREGIGPVSFTLSA 57
++ R VF+++ ++ W +++ Y +++ + L+ +R++ + TLS
Sbjct: 91 TYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSP 150
Query: 58 LFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPER 117
+ K C V + H +G D +V ++ +Y+K F ++ E
Sbjct: 151 MLKLCLHSGYVWASESFHGYACKIG-LDGDEFVAGALVNIYLK----------FGKVKEG 199
Query: 118 DVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQ 177
V LF E+P +D V W M+ Y++ EAI+
Sbjct: 200 KV---------------------LFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFH 238
Query: 178 YAGVETDYVT--LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKC 235
+G+ + +T L+ IS G A V A G+ ++ ++ + + Y
Sbjct: 239 SSGLNPNEITLRLLARIS-----GDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHS 293
Query: 236 GSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295
G YS++ ++ F DMV+++ + + VTFI +L
Sbjct: 294 G------------------QYSAL-------------LKCFADMVESDVECDQVTFILML 322
Query: 296 TACSHV 301
V
Sbjct: 323 ATAVKV 328
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 207/564 (36%), Positives = 327/564 (57%), Gaps = 58/564 (10%)
Query: 3 SFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKAC 62
S+ + VF ++ K W ALI G+ + S+ + M+ G+ P SFT+ +L AC
Sbjct: 447 SYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSAC 506
Query: 63 TEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSW 122
+++ + LG+++H I+ DL+V +++ +Y+ C
Sbjct: 507 SKLKSLRLGKEVHG-FIIRNWLERDLFVYLSVLSLYIHC--------------------- 544
Query: 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182
G++ + LF+ + K V+W ++TGY+QN P A+ F +M G++
Sbjct: 545 ----------GELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQ 594
Query: 183 TDYVTLVGVISACA-----QLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS 237
++++ V AC+ +LG +A + + E F + +LIDMY+K GS
Sbjct: 595 LCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAF-------IACSLIDMYAKNGS 647
Query: 238 IDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297
I + ++F G+K+++ S+++MI+G+ +HG A AI+LF +M +T P+ +TF+GVLTA
Sbjct: 648 ITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA 707
Query: 298 CSHVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMV-EKMPVEPNG 344
C+H GL +G+ P+ HYAC++D+LGRAG L++AL++V E+M E +
Sbjct: 708 CNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADV 767
Query: 345 GVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLL 404
G+W +LL +C+IH+N E+ + A LFELEP+K NY++LSN+YA G W+DV +VR+ +
Sbjct: 768 GIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRM 827
Query: 405 KMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSV 464
L+K+ G SW+E +R V F G+ EI+ L ++ GY+P+ SV
Sbjct: 828 NEMSLRKDAGCSWIELNRKVF-SFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSV 886
Query: 465 LYDVSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGR 524
+D+S+EEK L HSEKLAL +GL+ TS G T+R+ KNLRIC DCH S+V+ R
Sbjct: 887 QHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMER 946
Query: 525 EIVVRDNMRFHHFQDGKCSCGNYW 548
EIVVRDN RFHHF++G CSCG+YW
Sbjct: 947 EIVVRDNKRFHHFKNGVCSCGDYW 970
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 154/380 (40%), Gaps = 61/380 (16%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSM-RREGIGPVSFTLSALFKACTE 64
R VF+ ++ KN F W A+I Y + + + M + P FT + KAC
Sbjct: 140 RFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAG 199
Query: 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTE 124
+ DV +G +H ++ G D++VGN ++ Y GF+
Sbjct: 200 MSDVGIGLAVHG-LVVKTGLVEDVFVGNALVSFYGTHGFV-------------------- 238
Query: 125 LIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAI----EYFERMQYAG 180
A LF+ +P ++ V+W +M+ + N E+ E E
Sbjct: 239 -----------TDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGA 287
Query: 181 VETDYVTLVGVISACA---QLGVIKYAN-WVCEIAEGSGFGPINNVVVGSALIDMYSKCG 236
D TLV V+ CA ++G+ K + W ++ +V+ +AL+DMYSKCG
Sbjct: 288 FMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLD------KELVLNNALMDMYSKCG 341
Query: 237 SIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVK--TETKPNGVTFIGV 294
I +A IF +NV S+++M+ GF+ G H + M+ + K + VT +
Sbjct: 342 CITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNA 401
Query: 295 LTACSHVG-------LKCYGVSPSTDHYACMVDLL----GRAGCLEEALKMVEKMPVEPN 343
+ C H L CY + + + + + G L A ++ + +
Sbjct: 402 VPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTV 461
Query: 344 GGVWGALLGACQIHRNPEIA 363
W AL+G +P ++
Sbjct: 462 NS-WNALIGGHAQSNDPRLS 480
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 133/314 (42%), Gaps = 48/314 (15%)
Query: 54 TLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDE 113
L L +A + D+ +G++IH +D + +I MY CG SR VFD
Sbjct: 86 ALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDA 145
Query: 114 MPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYF 173
+ +++ W +I +Y+ N L D+V T +
Sbjct: 146 LRSKNLFQWNAVISSYSRN-------------ELYDEVLET-----------------FI 175
Query: 174 ERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYS 233
E + + D+ T VI ACA + + V + +G + +V VG+AL+ Y
Sbjct: 176 EMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGL--VEDVFVGNALVSFYG 233
Query: 234 KCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK----PNGV 289
G + DA ++F M +RN+ S++SMI F+ +G + + L G+M++ P+
Sbjct: 234 THGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVA 293
Query: 290 TFIGVLTACSH-------VGLKCYGVSPSTDHYA----CMVDLLGRAGCLEEALKMVEKM 338
T + VL C+ G+ + V D ++D+ + GC+ A +M+ KM
Sbjct: 294 TLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNA-QMIFKM 352
Query: 339 PVEPNGGVWGALLG 352
N W ++G
Sbjct: 353 NNNKNVVSWNTMVG 366
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 122/300 (40%), Gaps = 40/300 (13%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRRE----GIGPVSFTLSALFKACT 63
+F+ + +N W ++IR + G ++S L M E P TL + C
Sbjct: 244 LFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA 303
Query: 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWT 123
++ LG+ +H + L +L + N ++ MY KCG ++
Sbjct: 304 REREIGLGKGVHGWAVKLR-LDKELVLNNALMDMYSKCG----------------CITNA 346
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG--V 181
++I NN K+ V+W MV G+ + +M G V
Sbjct: 347 QMIFKMNNN---------------KNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDV 391
Query: 182 ETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDA 241
+ D VT++ + C + + + F + N +V +A + Y+KCGS+ A
Sbjct: 392 KADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF--VYNELVANAFVASYAKCGSLSYA 449
Query: 242 YRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301
R+F G++ + V S++++I G A ++ M + P+ T +L+ACS +
Sbjct: 450 QRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKL 509
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/558 (35%), Positives = 306/558 (54%), Gaps = 56/558 (10%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
+F + F + +IRGY+ ++++ Y M + G P +FT L KACT +
Sbjct: 88 IFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKS 147
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
+ G+QIH Q LG +D++V N++I MY +C
Sbjct: 148 IREGKQIHGQVFKLG-LEADVFVQNSLINMYGRC-------------------------- 180
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERM-QYAGVETDYV 186
G+ME + +F +L K +W++MV+ E + F M ++ +
Sbjct: 181 -----GEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEES 235
Query: 187 TLVGVISACAQLGVIKYANWVCEIAEGSGFGPIN----NVVVGSALIDMYSKCGSIDDAY 242
+V + ACA G + + GF N N++V ++L+DMY KCG +D A
Sbjct: 236 GMVSALLACANTGALNLGMSI------HGFLLRNISELNIIVQTSLVDMYVKCGCLDKAL 289
Query: 243 RIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302
IF M++RN +YS+MI G A+HG +A+++F M+K +P+ V ++ VL ACSH G
Sbjct: 290 HIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSG 349
Query: 303 LKCYG------------VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGAL 350
L G V P+ +HY C+VDLLGRAG LEEAL+ ++ +P+E N +W
Sbjct: 350 LVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTF 409
Query: 351 LGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410
L C++ +N E+ QIAA L +L G+Y+++SN+Y+ MWDDV+R R + + GLK
Sbjct: 410 LSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLK 469
Query: 411 KNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSD 470
+ PG+S +E +G H F + D +HP EI + L + +L+ +GY P+L +L +V +
Sbjct: 470 QTPGFSIVEL-KGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDE 528
Query: 471 EEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRD 530
EEKK L HS+K+A+AFGLL T PG+ ++I +NLR+C DCH + S + REIVVRD
Sbjct: 529 EEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRD 588
Query: 531 NMRFHHFQDGKCSCGNYW 548
RFH F+ G CSC +YW
Sbjct: 589 RNRFHLFKGGTCSCKDYW 606
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 125/282 (44%), Gaps = 22/282 (7%)
Query: 135 MESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISA 194
M A +F + + M+ GYV EA+ ++ M G E D T ++ A
Sbjct: 82 MNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKA 141
Query: 195 CAQLGVIKYANWVCEIAEGSGF--GPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN 252
C +L I+ + G F G +V V ++LI+MY +CG ++ + +F ++ +
Sbjct: 142 CTRLKSIREGKQI----HGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKT 197
Query: 253 VFSYSSMILGFAMHGRAHAAIQLFGDMV-KTETKPNGVTFIGVLTACSHVGLKCYGVSP- 310
S+SSM+ A G + LF M +T K + L AC++ G G+S
Sbjct: 198 AASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIH 257
Query: 311 ----------STDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNP 360
+ +VD+ + GCL++AL + +KM + N + A++ +H
Sbjct: 258 GFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKME-KRNNLTYSAMISGLALHGEG 316
Query: 361 EIAQIAANHLFE--LEPDKIGNYIILSNIYASAGMWDDVSRV 400
E A + + + LEPD + Y+ + N + +G+ + RV
Sbjct: 317 ESALRMFSKMIKEGLEPDHVV-YVSVLNACSHSGLVKEGRRV 357
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 217/611 (35%), Positives = 325/611 (53%), Gaps = 72/611 (11%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTL---------- 55
R VF+ + +N WTAL++GY+ G + + SL+ M + VS+T+
Sbjct: 99 RKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKN--KVSWTVMLIGFLQDGR 156
Query: 56 ----SALFKACTEVLDVSLGQQIH----------AQTILLGGFTSDLYVGNTMIGMYVKC 101
L++ + +++ IH A+ I + TM+ Y +
Sbjct: 157 IDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQN 216
Query: 102 GFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYV 161
+ +RK+FD MPE+ VSWT +++ Y NG +E A LF +P+K +A AM++G
Sbjct: 217 NRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLG 276
Query: 162 QN---AKPR----------------------------EAIEYFERMQYAGVETDYVTLVG 190
Q AK R EA++ F MQ GV + TL+
Sbjct: 277 QKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLIS 336
Query: 191 VISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ 250
++S CA L + + V F +V V S L+ MY KCG + + IF
Sbjct: 337 ILSVCASLASLHHGKQVHAQLVRCQFDV--DVYVASVLMTMYIKCGELVKSKLIFDRFPS 394
Query: 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDM-VKTETKPNGVTFIGVLTACSHVGL------ 303
+++ ++S+I G+A HG A+++F +M + TKPN VTF+ L+ACS+ G+
Sbjct: 395 KDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLK 454
Query: 304 ------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIH 357
+GV P T HYACMVD+LGRAG EA++M++ M VEP+ VWG+LLGAC+ H
Sbjct: 455 IYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTH 514
Query: 358 RNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSW 417
++A+ A L E+EP+ G YI+LSN+YAS G W DV+ +R+L+K ++K+PG SW
Sbjct: 515 SQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSW 574
Query: 418 LEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRIL 477
E + V R G +HP I + L +L L+ GY P+ L+DV +EEK L
Sbjct: 575 TEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSL 634
Query: 478 MTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFHHF 537
HSE+LA+A+ LL S G +R+MKNLR+C DCH + S+V REI++RD RFHHF
Sbjct: 635 KYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHF 694
Query: 538 QDGKCSCGNYW 548
++G+CSC +YW
Sbjct: 695 RNGECSCKDYW 705
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 108/189 (57%), Gaps = 12/189 (6%)
Query: 92 NTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKV 151
N ++ Y+K G + +RKVFD MPER+VVSWT L+ Y +NG ++ A LF ++P K+KV
Sbjct: 83 NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKV 142
Query: 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVC-EI 210
+WT M+ G++Q+ + +A + +E + + D + +I + G + A + E+
Sbjct: 143 SWTVMLIGFLQDGRIDDACKLYEMIP----DKDNIARTSMIHGLCKEGRVDEAREIFDEM 198
Query: 211 AEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAH 270
+E S V+ + ++ Y + +DDA +IF M ++ S++SM++G+ +GR
Sbjct: 199 SERS-------VITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIE 251
Query: 271 AAIQLFGDM 279
A +LF M
Sbjct: 252 DAEELFEVM 260
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 131/263 (49%), Gaps = 14/263 (5%)
Query: 92 NTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKV 151
N+M+ Y +RK+FDEMP+R+++SW L+ Y NG+++ A +F+ +P ++ V
Sbjct: 52 NSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVV 111
Query: 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIA 211
+WTA+V GYV N K A F +M + V L+G + Q G I A C++
Sbjct: 112 SWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFL----QDGRIDDA---CKLY 164
Query: 212 EGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHA 271
E P + + +++I K G +D+A IF M +R+V ++++M+ G+ + R
Sbjct: 165 E---MIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDD 221
Query: 272 AIQLFGDMV-KTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYAC--MVDLLGRAGCL 328
A ++F M KTE + V + + V P AC M+ LG+ G +
Sbjct: 222 ARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEI 281
Query: 329 EEALKMVEKMPVEPNGGVWGALL 351
+A ++ + M E N W ++
Sbjct: 282 AKARRVFDSMK-ERNDASWQTVI 303
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 123/261 (47%), Gaps = 23/261 (8%)
Query: 90 VGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKD 149
N I + G + +RK+FD + + SW ++ Y N A LF+E+P ++
Sbjct: 19 TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRN 78
Query: 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCE 209
++W +V+GY++N + EA + F+ M E + V+ ++ G + +
Sbjct: 79 IISWNGLVSGYMKNGEIDEARKVFDLMP----ERNVVSWTALVKGYVHNGKV-------D 127
Query: 210 IAEGSGFG-PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGR 268
+AE + P N V + ++ + + G IDDA +++ + ++ + +SMI G GR
Sbjct: 128 VAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGR 187
Query: 269 AHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV-----GLKCYGVSPSTDHYACMVDLLG 323
A ++F +M ++ + +T+ ++T K + V P + L+G
Sbjct: 188 VDEAREIFDEM----SERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMG 243
Query: 324 --RAGCLEEALKMVEKMPVEP 342
+ G +E+A ++ E MPV+P
Sbjct: 244 YVQNGRIEDAEELFEVMPVKP 264
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 209/565 (36%), Positives = 308/565 (54%), Gaps = 52/565 (9%)
Query: 4 FPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT 63
F ++ E++K + W+A I GY +G +++ + M GI P TL ++ C
Sbjct: 318 FEKMQEEKIKM-DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCA 376
Query: 64 EVLDVSLGQQIHAQTILL------GGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPER 117
V + G++IH I G + V N +I MY KC + +R +FD + +
Sbjct: 377 SVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPK 436
Query: 118 DVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQ 177
+ +D V WT M+ GY Q+ +A+E M
Sbjct: 437 E-----------------------------RDVVTWTVMIGGYSQHGDANKALELLSEMF 467
Query: 178 YAGVET--DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKC 235
+T + T+ + ACA L ++ + A + + + V + LIDMY+KC
Sbjct: 468 EEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKC 526
Query: 236 GSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295
GSI DA +F M +N +++S++ G+ MHG A+ +F +M + K +GVT + VL
Sbjct: 527 GSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVL 586
Query: 296 TACSHVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPN 343
ACSH G+ +GVSP +HYAC+VDLLGRAG L AL+++E+MP+EP
Sbjct: 587 YACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPP 646
Query: 344 GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRL 403
VW A L C+IH E+ + AA + EL + G+Y +LSN+YA+AG W DV+R+R L
Sbjct: 647 PVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSL 706
Query: 404 LKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRS 463
++ G+KK PG SW+EG +G F GD THP++ EI Q L D + R++ GY P
Sbjct: 707 MRHKGVKKRPGCSWVEGIKGTT-TFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGF 765
Query: 464 VLYDVSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIG 523
L+DV DEEK +L HSEKLALA+G+LTT GA +RI KNLR+C DCH S++I
Sbjct: 766 ALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIID 825
Query: 524 REIVVRDNMRFHHFQDGKCSCGNYW 548
+I++RD+ RFHHF++G CSC YW
Sbjct: 826 HDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 189/380 (49%), Gaps = 32/380 (8%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRRE-GIGPVSFTLSALFKACTE 64
R VF+++ + W ++I Y G K ++ ++ M E G P + TL + C
Sbjct: 182 RKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCAS 241
Query: 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTE 124
+ SLG+Q+H + +++VGN ++ MY KCG + + VF M +DVVSW
Sbjct: 242 LGTHSLGKQLHCFAV-TSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNA 300
Query: 125 LIVAYANNGDMESAGGLFNELPLK----DKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180
++ Y+ G E A LF ++ + D V W+A ++GY Q EA+ +M +G
Sbjct: 301 MVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSG 360
Query: 181 VETDYVTLVGVISACAQLGVIKYANWVCEIA-------EGSGFGPINNVVVGSALIDMYS 233
++ + VTL+ V+S CA +G + + + A +G G N V+ + LIDMY+
Sbjct: 361 IKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVI--NQLIDMYA 418
Query: 234 KCGSIDDAYRIFVGM--KQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT--ETKPNGV 289
KC +D A +F + K+R+V +++ MI G++ HG A+ A++L +M + +T+PN
Sbjct: 419 KCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAF 478
Query: 290 TFIGVLTACS-----HVGLKCYGVSPSTDHYA-------CMVDLLGRAGCLEEALKMVEK 337
T L AC+ +G + + + A C++D+ + G + +A + +
Sbjct: 479 TISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDN 538
Query: 338 MPVEPNGGVWGALLGACQIH 357
M + N W +L+ +H
Sbjct: 539 M-MAKNEVTWTSLMTGYGMH 557
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/423 (26%), Positives = 180/423 (42%), Gaps = 89/423 (21%)
Query: 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQ 77
+ W +LIR Y G + L+ M P ++T +FKAC E+ V G+ HA
Sbjct: 93 YHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHAL 152
Query: 78 TILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMES 137
+ L+ GF S+++VGN ++ MY +C L +RKVFD
Sbjct: 153 S-LVTGFISNVFVGNALVAMYSRCRSLSDARKVFD------------------------- 186
Query: 138 AGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYA-GVETDYVTLVGVISACA 196
E+ + D V+W +++ Y + KP+ A+E F RM G D +TLV V+ CA
Sbjct: 187 ------EMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCA 240
Query: 197 QLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSY 256
LG + A S I N+ VG+ L+DMY+KCG +D+A +F M ++V S+
Sbjct: 241 SLGTHSLGKQLHCFAVTSEM--IQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSW 298
Query: 257 SSMILGFAMHGRAHAAIQLFG-----------------------------------DMVK 281
++M+ G++ GR A++LF M+
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358
Query: 282 TETKPNGVTFIGVLTACSHVG-------LKCYGVSPSTDHYAC-----------MVDLLG 323
+ KPN VT I VL+ C+ VG + CY + D ++D+
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYA 418
Query: 324 RAGCLEEALKMVEKM-PVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYI 382
+ ++ A M + + P E + W ++G H + A + +FE + N
Sbjct: 419 KCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAF 478
Query: 383 ILS 385
+S
Sbjct: 479 TIS 481
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 226 SALIDMYSKCGSIDDAYRIFVGMKQRN--VFSYSSMILGFAMHGRAHAAIQLFGDMVKTE 283
S LI Y G + A + + V+ ++S+I + +G A+ + LFG M
Sbjct: 63 SHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLS 122
Query: 284 TKPNGVTFIGVLTACSHV-----GLKCYGVSPSTDHYA------CMVDLLGRAGCLEEAL 332
P+ TF V AC + G + +S T + +V + R L +A
Sbjct: 123 WTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDAR 182
Query: 333 KMVEKMPV 340
K+ ++M V
Sbjct: 183 KVFDEMSV 190
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 216/562 (38%), Positives = 318/562 (56%), Gaps = 55/562 (9%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHL-KDSISLYCSMRREG-IGPVSFTLSALFKACT 63
R VF++++ + WTALI GY+ +L ++I+L+ M +G + P FT S+ FKAC
Sbjct: 325 RKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACG 384
Query: 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWT 123
+ D +G+Q+ Q G S+ V N++I M+VK + +++ F+ + E+++VS+
Sbjct: 385 NLSDPRVGKQVLGQA-FKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYN 443
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183
+ N + E A L +E+ ++ GV
Sbjct: 444 TFLDGTCRNLNFEQAFKLLSEITERE-----------------------------LGVSA 474
Query: 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243
T ++S A +G I+ + ++ G N V +ALI MYSKCGSID A R
Sbjct: 475 --FTFASLLSGVANVGSIRKGEQI--HSQVVKLGLSCNQPVCNALISMYSKCGSIDTASR 530
Query: 244 IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL 303
+F M+ RNV S++SMI GFA HG A ++ F M++ KPN VT++ +L+ACSHVGL
Sbjct: 531 VFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGL 590
Query: 304 KCYG------------VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL 351
G + P +HYACMVDLL RAG L +A + + MP + + VW L
Sbjct: 591 VSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650
Query: 352 GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411
GAC++H N E+ ++AA + EL+P++ YI LSNIYA AG W++ + +RR +K L K
Sbjct: 651 GACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVK 710
Query: 412 NPGYSWLE-GDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDV-- 468
G SW+E GD+ IH+F GD HPN+ +I L L+ ++ GY P+ VL+ +
Sbjct: 711 EGGCSWIEVGDK--IHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEE 768
Query: 469 --SDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREI 526
+ EK+R+L HSEK+A+AFGL++TS VR+ KNLR+C DCH M S V GREI
Sbjct: 769 ENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREI 828
Query: 527 VVRDNMRFHHFQDGKCSCGNYW 548
V+RD RFHHF+DGKCSC +YW
Sbjct: 829 VLRDLNRFHHFKDGKCSCNDYW 850
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 147/304 (48%), Gaps = 44/304 (14%)
Query: 8 VFEQVKY---KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTE 64
VFE ++ ++ W+A++ Y G D+I ++ G+ P + +A+ +AC+
Sbjct: 119 VFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSN 178
Query: 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC-GFLGCSRKVFDEMPERDVVSWT 123
V +G+ + G F SD+ VG ++I M+VK + KVFD+M E +VV+
Sbjct: 179 SDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVT-- 236
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183
WT M+T +Q PREAI +F M +G E+
Sbjct: 237 -----------------------------WTLMITRCMQMGFPREAIRFFLDMVLSGFES 267
Query: 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKC---GSIDD 240
D TL V SACA+L + + A SG +++ V +L+DMY+KC GS+DD
Sbjct: 268 DKFTLSSVFSACAELENLSLGKQLHSWAIRSGL--VDD--VECSLVDMYAKCSADGSVDD 323
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMH-GRAHAAIQLFGDMV-KTETKPNGVTFIGVLTAC 298
++F M+ +V S++++I G+ + A AI LF +M+ + +PN TF AC
Sbjct: 324 CRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383
Query: 299 SHVG 302
++
Sbjct: 384 GNLS 387
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 174/398 (43%), Gaps = 65/398 (16%)
Query: 23 LIRGYILQGHLKDSISLYCSMRREGIGPV-SFTLSALFKACTEVLDVSLGQQIHAQTILL 81
LI ++ G L+ ++S M R+GI P+ S T S+L K+C D LG+ +HA+ I
Sbjct: 32 LILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEF 91
Query: 82 GGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP---ERDVVSWTELIVAYANNGDMESA 138
D + N++I +Y K G + VF+ M +RDVVSW+ ++ Y NNG
Sbjct: 92 D-IEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNG----- 145
Query: 139 GGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYF-ERMQYAGVETDYVTLVGVISACAQ 197
+ +AI+ F E ++ V DY VI AC+
Sbjct: 146 --------------------------RELDAIKVFVEFLELGLVPNDYC-YTAVIRACSN 178
Query: 198 LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKC-GSIDDAYRIFVGMKQRNVFSY 256
+ +G ++V VG +LIDM+ K S ++AY++F M + NV ++
Sbjct: 179 SDFVGVGRVTLGFLMKTGHFE-SDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTW 237
Query: 257 SSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV-------GLKCYGV- 308
+ MI G AI+ F DMV + + + T V +AC+ + L + +
Sbjct: 238 TLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIR 297
Query: 309 SPSTDHYAC-MVDLLGRA---GCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQ 364
S D C +VD+ + G +++ K+ ++M + + W AL+ +N +A
Sbjct: 298 SGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRME-DHSVMSWTALITG--YMKNCNLAT 354
Query: 365 IAANHLFEL------EPDKIGNYIILSNIYASAGMWDD 396
A N E+ EP N+ S+ + + G D
Sbjct: 355 EAINLFSEMITQGHVEP----NHFTFSSAFKACGNLSD 388
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/556 (35%), Positives = 308/556 (55%), Gaps = 48/556 (8%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R++F+++ + + +I Y + S+ + M+ G +F + + +
Sbjct: 305 RMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANL 364
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
+ +G+Q+H Q LL S L+VGN+++ MY KC ++F+E EL
Sbjct: 365 SSLQMGRQLHCQA-LLATADSILHVGNSLVDMYAKC-------EMFEE---------AEL 407
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
I F LP + V+WTA+++GYVQ ++ F +M+ + + D
Sbjct: 408 I---------------FKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQ 452
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
T V+ A A + + SG + NV GS L+DMY+KCGSI DA ++F
Sbjct: 453 STFATVLKASASFASLLLGKQLHAFIIRSG--NLENVFSGSGLVDMYAKCGSIKDAVQVF 510
Query: 246 VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-- 303
M RN S++++I A +G AAI F M+++ +P+ V+ +GVLTACSH G
Sbjct: 511 EEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVE 570
Query: 304 ----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353
YG++P HYACM+DLLGR G EA K++++MP EP+ +W ++L A
Sbjct: 571 QGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNA 630
Query: 354 CQIHRNPEIAQIAANHLFELEPDK-IGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKN 412
C+IH+N +A+ AA LF +E + Y+ +SNIYA+AG W+ V V++ ++ G+KK
Sbjct: 631 CRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKV 690
Query: 413 PGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEE 472
P YSW+E + IH F + D THPN EI + + +L ++ +GY+P+ SV+ DV ++
Sbjct: 691 PAYSWVEVNHK-IHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQM 749
Query: 473 KKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNM 532
K L HSE+LA+AF L++T G + +MKNLR C DCH + S+++ REI VRD
Sbjct: 750 KIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTS 809
Query: 533 RFHHFQDGKCSCGNYW 548
RFHHF +G CSCG+YW
Sbjct: 810 RFHHFSEGVCSCGDYW 825
Score = 135 bits (341), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 179/387 (46%), Gaps = 50/387 (12%)
Query: 7 LVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVL 66
++FE++ K+ + LI GY G +SI L+ MR+ G P FT S + KA +
Sbjct: 205 VLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLH 264
Query: 67 DVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELI 126
D +LGQQ+HA ++ G F+ D VGN ++ Y K D V T +
Sbjct: 265 DFALGQQLHALSVTTG-FSRDASVGNQILDFYSK----------------HDRVLETRM- 306
Query: 127 VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYV 186
LF+E+P D V++ +++ Y Q + ++ +F MQ G +
Sbjct: 307 --------------LFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNF 352
Query: 187 TLVGVISACAQLGVIKYANWV-CEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
++S A L ++ + C+ + ++ VG++L+DMY+KC ++A IF
Sbjct: 353 PFATMLSIAANLSSLQMGRQLHCQALLATADSILH---VGNSLVDMYAKCEMFEEAELIF 409
Query: 246 VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS------ 299
+ QR S++++I G+ G A ++LF M + + + TF VL A +
Sbjct: 410 KSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLL 469
Query: 300 -----HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGAC 354
H + G + + +VD+ + G +++A+++ E+MP + N W AL+ A
Sbjct: 470 LGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALISAH 528
Query: 355 QIHRNPEIAQIAANHLFE--LEPDKIG 379
+ + E A A + E L+PD +
Sbjct: 529 ADNGDGEAAIGAFAKMIESGLQPDSVS 555
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 4/232 (1%)
Query: 79 ILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESA 138
I+ GF +D N ++ ++ G + +RKV+DEMP ++ VS +I + GD+ SA
Sbjct: 39 IIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSA 98
Query: 139 GGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET--DYVTLVGVISACA 196
LF+ +P + V WT ++ Y +N+ EA + F +M + T D+VT ++ C
Sbjct: 99 RDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCN 158
Query: 197 QLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSY 256
V A GF + V + L+ Y + +D A +F + +++ ++
Sbjct: 159 DAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTF 218
Query: 257 SSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGV 308
+++I G+ G +I LF M ++ +P+ TF GVL A VGL + +
Sbjct: 219 NTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAV--VGLHDFAL 268
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 144/363 (39%), Gaps = 46/363 (12%)
Query: 3 SFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREG--IGPVSFTLSALFK 60
S R +F+ + + WT L+ Y H ++ L+ M R P T + L
Sbjct: 96 SSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLP 155
Query: 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVV 120
C + + + Q+HA + LG FD P V
Sbjct: 156 GCNDAVPQNAVGQVHAFAVKLG----------------------------FDTNPFLTVS 187
Query: 121 SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180
+ L+ +Y ++ A LF E+P KD V + ++TGY ++ E+I F +M+ +G
Sbjct: 188 NV--LLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSG 245
Query: 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240
+ T GV+ A L + ++ +GF + VG+ ++D YSK + +
Sbjct: 246 HQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFS--RDASVGNQILDFYSKHDRVLE 303
Query: 241 AYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSH 300
+F M + + SY+ +I ++ + A++ F +M F +L+ ++
Sbjct: 304 TRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAAN 363
Query: 301 VG-------LKCYGVSPSTDHY----ACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGA 349
+ L C + + D +VD+ + EEA + + +P + W A
Sbjct: 364 LSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLP-QRTTVSWTA 422
Query: 350 LLG 352
L+
Sbjct: 423 LIS 425
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/546 (35%), Positives = 293/546 (53%), Gaps = 47/546 (8%)
Query: 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQI 74
K+ WT +I GY +++ + M GI L+ AC + + GQQI
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613
Query: 75 HAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGD 134
HAQ + GF+SDL N ++ +Y +CG
Sbjct: 614 HAQACV-SGFSSDLPFQNALVTLYSRCG-------------------------------K 641
Query: 135 MESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISA 194
+E + F + D +AW A+V+G+ Q+ EA+ F RM G++ + T + A
Sbjct: 642 IEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 701
Query: 195 CAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVF 254
++ +K V + +G+ + V +ALI MY+KCGSI DA + F+ + +N
Sbjct: 702 ASETANMKQGKQVHAVITKTGYD--SETEVCNALISMYAKCGSISDAEKQFLEVSTKNEV 759
Query: 255 SYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL----------- 303
S++++I ++ HG A+ F M+ + +PN VT +GVL+ACSH+GL
Sbjct: 760 SWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESM 819
Query: 304 -KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEI 362
YG+SP +HY C+VD+L RAG L A + +++MP++P+ VW LL AC +H+N EI
Sbjct: 820 NSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEI 879
Query: 363 AQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDR 422
+ AA+HL ELEP+ Y++LSN+YA + WD R+ +K G+KK PG SW+E +
Sbjct: 880 GEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEV-K 938
Query: 423 GVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRILMTHSE 482
IH F GD HP + EI + DL R GY + S+L ++ E+K I+ HSE
Sbjct: 939 NSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSE 998
Query: 483 KLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFHHFQDGKC 542
KLA++FGLL+ + +MKNLR+C DCH ++ S+V REI+VRD RFHHF+ G C
Sbjct: 999 KLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGAC 1058
Query: 543 SCGNYW 548
SC +YW
Sbjct: 1059 SCKDYW 1064
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 164/360 (45%), Gaps = 46/360 (12%)
Query: 9 FEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDV 68
F + + +N LW ++ Y L L++S ++ M+ E I P +T ++ K C + D+
Sbjct: 447 FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDL 506
Query: 69 SLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVA 128
LG+QIH+Q I+ F + YV + +I MY K G L +W ++++
Sbjct: 507 ELGEQIHSQ-IIKTNFQLNAYVCSVLIDMYAKLGKLD--------------TAW-DILIR 550
Query: 129 YANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTL 188
+A KD V+WT M+ GY Q +A+ F +M G+ +D V L
Sbjct: 551 FAG----------------KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGL 594
Query: 189 VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGM 248
+SACA L +K + A SGF +++ +AL+ +YS+CG I+++Y F
Sbjct: 595 TNAVSACAGLQALKEGQQIHAQACVSGFS--SDLPFQNALVTLYSRCGKIEESYLAFEQT 652
Query: 249 KQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS--------- 299
+ + ++++++ GF G A+++F M + N TF + A S
Sbjct: 653 EAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGK 712
Query: 300 --HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIH 357
H + G T+ ++ + + G + +A K ++ + N W A++ A H
Sbjct: 713 QVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK-NEVSWNAIINAYSKH 771
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 135/299 (45%), Gaps = 34/299 (11%)
Query: 4 FPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT 63
R VF+ ++ K+ W A+I G ++I L+C M GI P + S++ AC
Sbjct: 240 LARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACK 299
Query: 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWT 123
++ + +G+Q+H + L GF+SD YV N ++ +Y G L + +F M +RD V++
Sbjct: 300 KIESLEIGEQLHGLVLKL-GFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYN 358
Query: 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183
LI G Q +A+E F+RM G+E
Sbjct: 359 TLI-------------------------------NGLSQCGYGEKAMELFKRMHLDGLEP 387
Query: 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243
D TL ++ AC+ G + + GF NN + G AL+++Y+KC I+ A
Sbjct: 388 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFAS-NNKIEG-ALLNLYAKCADIETALD 445
Query: 244 IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302
F+ + NV ++ M++ + + + ++F M E PN T+ +L C +G
Sbjct: 446 YFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 504
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/386 (24%), Positives = 162/386 (41%), Gaps = 61/386 (15%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKAC---TE 64
VF+++ + F W +I+ + + + L+ M E + P T S + +AC +
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201
Query: 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTE 124
DV +QIHA+ IL G V N +I +Y + GF+ +R+V
Sbjct: 202 AFDVV--EQIHAR-ILYQGLRDSTVVCNPLIDLYSRNGFVDLARRV-------------- 244
Query: 125 LIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184
F+ L LKD +W AM++G +N EAI F M G+
Sbjct: 245 -----------------FDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPT 287
Query: 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
V+SAC ++ ++ + + GF ++ V +AL+ +Y G++ A I
Sbjct: 288 PYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS--SDTYVCNALVSLYFHLGNLISAEHI 345
Query: 245 FVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG-- 302
F M QR+ +Y+++I G + G A++LF M +P+ T ++ ACS G
Sbjct: 346 FSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTL 405
Query: 303 -----LKCY----GVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL-- 351
L Y G + + +++L + +E AL + VE N +W +L
Sbjct: 406 FRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVA 464
Query: 352 --------GACQIHRNPEIAQIAANH 369
+ +I R +I +I N
Sbjct: 465 YGLLDDLRNSFRIFRQMQIEEIVPNQ 490
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 101/195 (51%), Gaps = 32/195 (16%)
Query: 7 LVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVL 66
L FEQ + + W AL+ G+ G+ ++++ ++ M REGI +FT + KA +E
Sbjct: 647 LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETA 706
Query: 67 DVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELI 126
++ G+Q+HA I G+ S+ V N +I MY KCG + + K F E+ ++ VSW +I
Sbjct: 707 NMKQGKQVHA-VITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAII 765
Query: 127 VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYV 186
AY+ +G EA++ F++M ++ V ++V
Sbjct: 766 NAYSKHG-------------------------------FGSEALDSFDQMIHSNVRPNHV 794
Query: 187 TLVGVISACAQLGVI 201
TLVGV+SAC+ +G++
Sbjct: 795 TLVGVLSACSHIGLV 809
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 149/351 (42%), Gaps = 52/351 (14%)
Query: 42 SMRREGIGPVSFTLSALFKACTEVL-DVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVK 100
S+ GI P TL L + C + + G+++H+Q + LG ++
Sbjct: 74 SVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSN-------------- 119
Query: 101 CGFLGC-SRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTG 159
GC S K+FD Y GD+ A +F+E+P + W M+
Sbjct: 120 ----GCLSEKLFD---------------FYLFKGDLYGAFKVFDEMPERTIFTWNKMIKE 160
Query: 160 YVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGF-GP 218
E F RM V + T GV+ AC + G + + + V +I + G
Sbjct: 161 LASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC-RGGSVAF-DVVEQIHARILYQGL 218
Query: 219 INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGD 278
++ VV + LID+YS+ G +D A R+F G++ ++ S+ +MI G + + AI+LF D
Sbjct: 219 RDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCD 278
Query: 279 MVKTETKPNGVTFIGVLTACS-----HVGLKCYG----VSPSTDHYAC--MVDLLGRAGC 327
M P F VL+AC +G + +G + S+D Y C +V L G
Sbjct: 279 MYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN 338
Query: 328 LEEALKMVEKMPVEPNGGVWGALL-GACQIHRNPEIAQIAAN-HLFELEPD 376
L A + M + + + L+ G Q + ++ HL LEPD
Sbjct: 339 LISAEHIFSNMS-QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPD 388
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/554 (36%), Positives = 309/554 (55%), Gaps = 50/554 (9%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
+F+Q+ KN WT +I G +++ L+ +M R I S + + AC
Sbjct: 181 LFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPA 240
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
+G Q+H I LG F + YV ++I Y C +G SRKVFDE V
Sbjct: 241 FHMGIQVHGLIIKLG-FLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVA------- 292
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187
WTA+++GY N K +A+ F M + + T
Sbjct: 293 ------------------------VWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQST 328
Query: 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247
+++C+ LG + + + +A G + VG++L+ MYS G+++DA +F+
Sbjct: 329 FASGLNSCSALGTLDWGKEMHGVAVKLGLE--TDAFVGNSLVVMYSDSGNVNDAVSVFIK 386
Query: 248 MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307
+ ++++ S++S+I+G A HGR A +FG M++ +P+ +TF G+L+ACSH G G
Sbjct: 387 IFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKG 446
Query: 308 -------------VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGAC 354
+ HY CMVD+LGR G L+EA +++E+M V+PN VW ALL AC
Sbjct: 447 RKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSAC 506
Query: 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPG 414
++H + + + AA +F L+ Y++LSNIYASAG W +VS++R +K G+ K PG
Sbjct: 507 RMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPG 566
Query: 415 YSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKK 474
SW+ RG HEF +GD P+ + I + L L ++L+ GY P+ RS L+DV DE+K+
Sbjct: 567 SSWVV-IRGKKHEFFSGD--QPHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKE 623
Query: 475 RILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRF 534
+L HSE+LA+AFGL+ T G+ V +MKNLR+CEDCH + S V+GREIV+RD +RF
Sbjct: 624 EMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRF 683
Query: 535 HHFQDGKCSCGNYW 548
HHF++G CSCG+YW
Sbjct: 684 HHFKNGTCSCGDYW 697
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 175/417 (41%), Gaps = 87/417 (20%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R VF QV + L+T +I GY L D+++L+ M PV
Sbjct: 55 REVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEM------PVR------------- 95
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
D+ N+MI V+CG + + K+FDEMPER VVSWT +
Sbjct: 96 ---------------------DVVSWNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAM 134
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYV------------------------ 161
+ +G ++ A LF ++P+KD AW +MV GY+
Sbjct: 135 VNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWT 194
Query: 162 -------QNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGS 214
QN + EA++ F+ M +++ VI+ACA V +
Sbjct: 195 TMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKL 254
Query: 215 GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQ 274
GF + V ++LI Y+ C I D+ ++F V +++++ G++++ + A+
Sbjct: 255 GF--LYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALS 312
Query: 275 LFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG---------VSPSTDHYA--CMVDLLG 323
+F M++ PN TF L +CS +G +G + TD + +V +
Sbjct: 313 IFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYS 372
Query: 324 RAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFEL--EPDKI 378
+G + +A+ + K+ + + W +++ C H + A + + L EPD+I
Sbjct: 373 DSGNVNDAVSVFIKI-FKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEI 428
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/553 (35%), Positives = 308/553 (55%), Gaps = 65/553 (11%)
Query: 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIH 75
N WTA+I G++ ++++ L+ M+R+G+ P FT S + A L V ++H
Sbjct: 361 NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA----LPVISPSEVH 416
Query: 76 AQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDM 135
AQ VK + ER T L+ AY G +
Sbjct: 417 AQV--------------------VKTNY------------ERSSTVGTALLDAYVKLGKV 444
Query: 136 ESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISAC 195
E A +F+ + KD VAW+AM+ GY Q + AI+ F + G++ + T +++ C
Sbjct: 445 EEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVC 504
Query: 196 AQLGVIKYANWVCEIAEGSGFGPI-------NNVVVGSALIDMYSKCGSIDDAYRIFVGM 248
A + +G F +++ V SAL+ MY+K G+I+ A +F
Sbjct: 505 AATN--------ASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQ 556
Query: 249 KQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG- 307
+++++ S++SMI G+A HG+A A+ +F +M K + K +GVTFIGV AC+H GL G
Sbjct: 557 REKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGE 616
Query: 308 -----------VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQI 356
++P+ +H +CMVDL RAG LE+A+K++E MP +W +L AC++
Sbjct: 617 KYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRV 676
Query: 357 HRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYS 416
H+ E+ ++AA + ++P+ Y++LSN+YA +G W + ++VR+L+ +KK PGYS
Sbjct: 677 HKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYS 736
Query: 417 WLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRI 476
W+E + + F AGD +HP +I L DL RL+ GY+P+ VL D+ DE K+ +
Sbjct: 737 WIEV-KNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAV 795
Query: 477 LMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFHH 536
L HSE+LA+AFGL+ T G+ + I+KNLR+C DCHL + +++ REIVVRD+ RFHH
Sbjct: 796 LAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHH 855
Query: 537 F-QDGKCSCGNYW 548
F DG CSCG++W
Sbjct: 856 FSSDGVCSCGDFW 868
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 164/361 (45%), Gaps = 55/361 (15%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R VF+++K +N WT LI GY + ++L+ M+ EG P SFT +A E
Sbjct: 148 RKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEE 207
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
G Q+H ++ G + V N++I +Y+KCG + +R +FD+ + VV+W +
Sbjct: 208 GVGGRGLQVHT-VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSM 266
Query: 126 IVAYANNG-DMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184
I YA NG D+E A G+F Y R+ Y V
Sbjct: 267 ISGYAANGLDLE-ALGMF-----------------------------YSMRLNY--VRLS 294
Query: 185 YVTLVGVISACAQLGVIKYANWV-CEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243
+ VI CA L +++ + C + + +G + + + +AL+ YSKC ++ DA R
Sbjct: 295 ESSFASVIKLCANLKELRFTEQLHCSVVK---YGFLFDQNIRTALMVAYSKCTAMLDALR 351
Query: 244 IF-----VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTAC 298
+F VG NV S+++MI GF + A+ LF +M + +PN T+ +LTA
Sbjct: 352 LFKEIGCVG----NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL 407
Query: 299 S-------HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL 351
H + S+ ++D + G +EEA K+ + + + W A+L
Sbjct: 408 PVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGID-DKDIVAWSAML 466
Query: 352 G 352
Sbjct: 467 A 467
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 137/294 (46%), Gaps = 34/294 (11%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
+F++ ++ + +L+ G+ G +++ L+ ++ R G+ S++ K + D
Sbjct: 49 LFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCD 108
Query: 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127
G+Q+H Q I G F D+ VG +++ Y+K RKVFDEM ER+VV+WT LI
Sbjct: 109 ELFGRQLHCQCIKFG-FLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLI- 166
Query: 128 AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187
+GY +N+ E + F RMQ G + + T
Sbjct: 167 ------------------------------SGYARNSMNDEVLTLFMRMQNEGTQPNSFT 196
Query: 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247
+ A+ GV V + +G + V ++LI++Y KCG++ A +F
Sbjct: 197 FAAALGVLAEEGVGGRGLQVHTVVVKNGLD--KTIPVSNSLINLYLKCGNVRKARILFDK 254
Query: 248 MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301
+ ++V +++SMI G+A +G A+ +F M + + +F V+ C+++
Sbjct: 255 TEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANL 308
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 38/244 (15%)
Query: 8 VFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD 67
VF + K+ W+A++ GY G + +I ++ + + GI P FT S++ C +
Sbjct: 450 VFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAAT-N 508
Query: 68 VSLGQ--QIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
S+GQ Q H I S L V + ++ MY K G + + +VF E+D+VSW +
Sbjct: 509 ASMGQGKQFHGFAIK-SRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSM 567
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
I YA +G + +A++ F+ M+ V+ D
Sbjct: 568 ISGYAQHG-------------------------------QAMKALDVFKEMKKRKVKMDG 596
Query: 186 VTLVGVISACAQLGVIKYANWVCEI-AEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244
VT +GV +AC G+++ +I P S ++D+YS+ G ++ A ++
Sbjct: 597 VTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKE--HNSCMVDLYSRAGQLEKAMKV 654
Query: 245 FVGM 248
M
Sbjct: 655 IENM 658
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 91/177 (51%), Gaps = 4/177 (2%)
Query: 137 SAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACA 196
+A LF++ P +D+ ++ +++ G+ ++ + +EA F + G+E D V+ A
Sbjct: 45 NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSA 104
Query: 197 QLGVIKYANWV-CEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFS 255
L + + C+ + FG +++V VG++L+D Y K + D ++F MK+RNV +
Sbjct: 105 TLCDELFGRQLHCQCIK---FGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVT 161
Query: 256 YSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPST 312
++++I G+A + + LF M T+PN TF L + G+ G+ T
Sbjct: 162 WTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHT 218
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 199/556 (35%), Positives = 303/556 (54%), Gaps = 48/556 (8%)
Query: 6 RLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV 65
R VF+++ + W A+I G I ++ +SL+ M G P +TL ++F +
Sbjct: 130 RKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGL 189
Query: 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTEL 125
VS+GQQIH TI G DL V +++ MY++
Sbjct: 190 RSVSIGQQIHGYTIKYG-LELDLVVNSSLAHMYMR------------------------- 223
Query: 126 IVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185
NG ++ + +P+++ VAW ++ G QN P + ++ M+ +G +
Sbjct: 224 ------NGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNK 277
Query: 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245
+T V V+S+C+ L + + AE G + V V S+LI MYSKCG + DA + F
Sbjct: 278 ITFVTVLSSCSDLAIRGQGQQIH--AEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAF 335
Query: 246 VGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMV-KTETKPNGVTFIGVLTACSHVGLK 304
+ + +SSMI + HG+ AI+LF M +T + N V F+ +L ACSH GLK
Sbjct: 336 SEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLK 395
Query: 305 ------------CYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLG 352
YG P HY C+VDLLGRAGCL++A ++ MP++ + +W LL
Sbjct: 396 DKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLS 455
Query: 353 ACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKN 412
AC IH+N E+AQ + +++P+ Y++L+N++ASA W DVS VR+ ++ +KK
Sbjct: 456 ACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKE 515
Query: 413 PGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEE 472
G SW E +G +H+F+ GD + S EI L +L ++ GY+P+ SVL+D+ +EE
Sbjct: 516 AGISWFE-HKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEE 574
Query: 473 KKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNM 532
K+ L+ HSEKLA+AF L+ GA +RI+KNLR+C DCH+ S + REI +RD
Sbjct: 575 KESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGS 634
Query: 533 RFHHFQDGKCSCGNYW 548
RFHHF +GKCSCG+YW
Sbjct: 635 RFHHFINGKCSCGDYW 650
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 165/352 (46%), Gaps = 19/352 (5%)
Query: 53 FTLSALF----KACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSR 108
FT ++LF ++CT + G+Q+H +++ GF+SD ++ N ++ MY K G +
Sbjct: 41 FTNTSLFTPFIQSCTTRQSLPSGKQLHC-LLVVSGFSSDKFICNHLMSMYSKLGDFPSAV 99
Query: 109 KVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPRE 168
V+ M +++ +S LI Y GD+ +A +F+E+P + W AM+ G +Q E
Sbjct: 100 AVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEE 159
Query: 169 AIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228
+ F M G D TL V S A L + + +G ++VV S+L
Sbjct: 160 GLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIH--GYTIKYGLELDLVVNSSL 217
Query: 229 IDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNG 288
MY + G + D + M RN+ +++++I+G A +G + L+ M + +PN
Sbjct: 218 AHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNK 277
Query: 289 VTFIGVLTACSHVGLKCYGVSPSTD-----------HYACMVDLLGRAGCLEEALKMVEK 337
+TF+ VL++CS + ++ G + + ++ + + GCL +A K +
Sbjct: 278 ITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSE 337
Query: 338 MPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389
E + +W +++ A H + A N + E +I L+ +YA
Sbjct: 338 REDE-DEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYA 388
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,873,387
Number of Sequences: 539616
Number of extensions: 8962028
Number of successful extensions: 25471
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 19102
Number of HSP's gapped (non-prelim): 1955
length of query: 548
length of database: 191,569,459
effective HSP length: 123
effective length of query: 425
effective length of database: 125,196,691
effective search space: 53208593675
effective search space used: 53208593675
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)