Query 038673
Match_columns 548
No_of_seqs 698 out of 3836
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 13:28:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 5E-111 1E-115 899.5 60.3 530 15-548 85-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1E-110 2E-115 918.1 59.4 539 1-546 237-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 4.7E-66 1E-70 565.8 41.6 519 1-543 136-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.2E-58 4.8E-63 496.7 45.1 406 1-413 385-847 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.6E-58 3.5E-63 497.8 40.9 498 14-527 367-912 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.3E-56 7.1E-61 477.0 37.7 474 49-542 84-582 (697)
7 PF14432 DYW_deaminase: DYW fa 100.0 5.5E-31 1.2E-35 209.3 7.3 106 414-538 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 8E-25 1.7E-29 244.3 40.9 397 3-409 448-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-23 2.3E-28 235.2 42.5 395 2-405 481-898 (899)
10 PRK11788 tetratricopeptide rep 99.9 1.2E-19 2.5E-24 182.5 30.2 291 97-414 44-354 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 4.6E-19 1E-23 171.0 31.0 356 18-408 117-486 (966)
12 TIGR00990 3a0801s09 mitochondr 99.9 2.8E-18 6.1E-23 181.8 38.5 355 19-407 129-571 (615)
13 KOG4626 O-linked N-acetylgluco 99.9 1.8E-19 3.9E-24 173.8 25.2 362 1-396 131-508 (966)
14 PRK11447 cellulose synthase su 99.8 1.2E-17 2.7E-22 188.4 41.3 395 2-410 285-744 (1157)
15 PRK15174 Vi polysaccharide exp 99.8 7E-18 1.5E-22 178.4 36.4 327 20-378 45-386 (656)
16 PRK11788 tetratricopeptide rep 99.8 2.6E-18 5.7E-23 172.7 31.5 280 62-372 45-346 (389)
17 PRK11447 cellulose synthase su 99.8 6.6E-17 1.4E-21 182.5 41.1 341 62-408 279-701 (1157)
18 PRK15174 Vi polysaccharide exp 99.8 3.3E-17 7.2E-22 173.2 34.5 326 52-408 42-382 (656)
19 PRK10049 pgaA outer membrane p 99.8 6.5E-17 1.4E-21 174.6 37.2 384 2-407 31-456 (765)
20 TIGR00990 3a0801s09 mitochondr 99.8 2.7E-15 5.9E-20 159.1 36.2 352 2-378 143-576 (615)
21 PRK10049 pgaA outer membrane p 99.7 1.2E-14 2.7E-19 157.1 37.0 347 2-379 65-462 (765)
22 PRK09782 bacteriophage N4 rece 99.7 3.8E-14 8.2E-19 153.7 38.9 372 23-408 188-707 (987)
23 PRK14574 hmsH outer membrane p 99.7 4.6E-14 9.9E-19 150.0 38.1 385 3-407 51-513 (822)
24 KOG4422 Uncharacterized conser 99.7 1E-13 2.2E-18 129.0 30.3 368 5-410 196-593 (625)
25 PRK09782 bacteriophage N4 rece 99.6 8.8E-13 1.9E-17 143.2 35.2 347 31-409 356-742 (987)
26 PRK14574 hmsH outer membrane p 99.6 2.6E-12 5.6E-17 136.8 37.0 347 2-379 84-519 (822)
27 KOG2003 TPR repeat-containing 99.6 6E-12 1.3E-16 118.1 28.7 191 198-393 503-709 (840)
28 KOG2076 RNA polymerase III tra 99.5 7E-11 1.5E-15 120.3 33.6 308 1-338 154-509 (895)
29 KOG4422 Uncharacterized conser 99.5 3.5E-11 7.7E-16 112.4 28.7 318 53-409 117-464 (625)
30 PF13429 TPR_15: Tetratricopep 99.5 3.9E-14 8.5E-19 135.1 9.3 249 126-405 15-275 (280)
31 KOG0547 Translocase of outer m 99.5 2.6E-11 5.6E-16 115.2 27.5 351 20-405 118-564 (606)
32 PRK10747 putative protoheme IX 99.5 8.1E-11 1.8E-15 117.6 29.9 279 65-405 97-388 (398)
33 KOG2076 RNA polymerase III tra 99.5 4.7E-11 1E-15 121.6 28.0 328 65-417 152-522 (895)
34 KOG1126 DNA-binding cell divis 99.5 5E-12 1.1E-16 124.7 20.4 272 104-408 335-621 (638)
35 PF13429 TPR_15: Tetratricopep 99.5 4.1E-13 8.9E-18 128.1 12.6 219 91-338 47-274 (280)
36 KOG2002 TPR-containing nuclear 99.5 6.7E-11 1.5E-15 121.2 28.7 388 14-406 267-744 (1018)
37 KOG0495 HAT repeat protein [RN 99.5 4.9E-10 1.1E-14 110.1 32.5 367 18-421 517-892 (913)
38 PRK10747 putative protoheme IX 99.4 1E-10 2.2E-15 116.9 27.9 269 2-281 100-389 (398)
39 KOG1126 DNA-binding cell divis 99.4 1.1E-11 2.4E-16 122.3 19.8 279 67-377 334-624 (638)
40 KOG2002 TPR-containing nuclear 99.4 4.9E-10 1.1E-14 115.0 32.0 363 34-404 147-556 (1018)
41 TIGR00540 hemY_coli hemY prote 99.4 1.5E-10 3.3E-15 116.3 28.5 277 100-404 96-396 (409)
42 KOG2003 TPR repeat-containing 99.4 4.3E-10 9.4E-15 105.8 24.4 245 159-407 428-689 (840)
43 KOG4318 Bicoid mRNA stability 99.4 1.4E-10 3.1E-15 117.5 22.7 376 14-411 22-598 (1088)
44 KOG1155 Anaphase-promoting com 99.4 1E-09 2.3E-14 103.8 26.5 303 29-372 239-552 (559)
45 KOG4318 Bicoid mRNA stability 99.4 4.3E-11 9.2E-16 121.2 18.4 259 171-468 11-278 (1088)
46 PF13041 PPR_2: PPR repeat fam 99.3 2.1E-12 4.6E-17 87.0 6.0 50 15-64 1-50 (50)
47 PF13041 PPR_2: PPR repeat fam 99.3 3.5E-12 7.5E-17 85.9 6.5 50 251-300 1-50 (50)
48 TIGR00540 hemY_coli hemY prote 99.3 1.1E-09 2.3E-14 110.2 27.6 271 2-281 100-398 (409)
49 KOG0495 HAT repeat protein [RN 99.3 3.3E-08 7.2E-13 97.6 36.3 267 121-418 518-791 (913)
50 KOG1915 Cell cycle control pro 99.3 8.6E-09 1.9E-13 97.9 30.4 396 2-407 89-536 (677)
51 KOG1155 Anaphase-promoting com 99.3 9.2E-09 2E-13 97.6 27.8 299 85-408 161-462 (559)
52 COG2956 Predicted N-acetylgluc 99.3 1.1E-08 2.3E-13 92.9 26.7 217 31-282 49-278 (389)
53 COG3071 HemY Uncharacterized e 99.2 2.7E-08 5.9E-13 93.1 29.1 117 66-184 98-221 (400)
54 TIGR02521 type_IV_pilW type IV 99.2 2.5E-09 5.5E-14 98.8 22.7 191 190-406 36-231 (234)
55 COG2956 Predicted N-acetylgluc 99.2 8.5E-09 1.8E-13 93.5 23.3 207 2-213 51-277 (389)
56 TIGR02521 type_IV_pilW type IV 99.2 7.2E-09 1.6E-13 95.7 23.3 197 150-375 31-234 (234)
57 KOG1129 TPR repeat-containing 99.2 1.1E-09 2.3E-14 99.3 15.8 224 154-407 227-458 (478)
58 COG3071 HemY Uncharacterized e 99.2 5.7E-08 1.2E-12 90.9 27.3 252 27-287 128-395 (400)
59 PRK12370 invasion protein regu 99.2 6.8E-09 1.5E-13 108.5 23.7 237 33-282 277-535 (553)
60 PRK12370 invasion protein regu 99.2 7E-09 1.5E-13 108.4 23.5 257 118-408 255-536 (553)
61 KOG1840 Kinesin light chain [C 99.1 1.2E-08 2.6E-13 102.0 23.4 234 151-405 200-477 (508)
62 KOG1915 Cell cycle control pro 99.1 1.8E-07 3.8E-12 89.2 29.3 370 4-405 159-583 (677)
63 KOG1129 TPR repeat-containing 99.1 4.1E-09 8.9E-14 95.5 14.6 228 21-281 227-457 (478)
64 KOG1174 Anaphase-promoting com 99.1 7.1E-07 1.5E-11 83.8 29.4 259 117-405 230-498 (564)
65 KOG2047 mRNA splicing factor [ 99.1 9.8E-07 2.1E-11 87.3 31.8 360 18-407 249-687 (835)
66 KOG1173 Anaphase-promoting com 99.1 6.9E-08 1.5E-12 94.1 23.3 276 85-385 241-530 (611)
67 KOG1840 Kinesin light chain [C 99.0 5.5E-08 1.2E-12 97.4 22.2 233 23-280 205-477 (508)
68 PRK11189 lipoprotein NlpI; Pro 99.0 4.8E-08 1E-12 93.5 20.6 212 164-408 40-266 (296)
69 KOG1173 Anaphase-promoting com 99.0 2.6E-07 5.6E-12 90.2 25.2 267 117-405 242-516 (611)
70 COG3063 PilF Tfp pilus assembl 98.9 7.3E-08 1.6E-12 83.7 16.6 163 222-409 35-204 (250)
71 COG3063 PilF Tfp pilus assembl 98.9 4.4E-07 9.4E-12 79.0 21.2 199 152-379 37-242 (250)
72 KOG4162 Predicted calmodulin-b 98.9 2.5E-06 5.5E-11 86.4 29.5 362 41-408 312-784 (799)
73 KOG1174 Anaphase-promoting com 98.9 8.5E-07 1.8E-11 83.3 24.0 302 49-379 191-506 (564)
74 PF04733 Coatomer_E: Coatomer 98.9 7.5E-08 1.6E-12 90.9 17.1 248 129-406 11-264 (290)
75 KOG0547 Translocase of outer m 98.9 1.3E-06 2.8E-11 83.9 25.0 223 130-374 337-567 (606)
76 PF12569 NARP1: NMDA receptor- 98.9 2.8E-06 6E-11 86.3 29.0 291 25-338 12-331 (517)
77 PF12569 NARP1: NMDA receptor- 98.9 1.3E-05 2.8E-10 81.5 33.4 389 2-402 20-515 (517)
78 KOG2047 mRNA splicing factor [ 98.9 1.2E-05 2.7E-10 79.8 31.5 356 18-405 139-613 (835)
79 KOG1156 N-terminal acetyltrans 98.9 7.8E-06 1.7E-10 81.4 30.3 386 17-409 8-470 (700)
80 PRK11189 lipoprotein NlpI; Pro 98.8 1.1E-06 2.4E-11 84.2 23.0 206 150-387 64-280 (296)
81 KOG3785 Uncharacterized conser 98.8 5.8E-06 1.3E-10 76.3 25.2 183 24-213 29-213 (557)
82 KOG2376 Signal recognition par 98.8 2.5E-05 5.5E-10 77.0 29.1 356 24-402 19-515 (652)
83 KOG3616 Selective LIM binding 98.7 2.4E-06 5.3E-11 85.6 21.9 189 157-401 739-931 (1636)
84 KOG2376 Signal recognition par 98.7 0.00012 2.5E-09 72.5 32.8 338 58-406 18-486 (652)
85 KOG4340 Uncharacterized conser 98.7 2.4E-05 5.3E-10 70.6 24.7 287 20-339 13-337 (459)
86 cd05804 StaR_like StaR_like; a 98.7 2.7E-05 5.7E-10 77.2 28.4 197 189-408 118-337 (355)
87 KOG1125 TPR repeat-containing 98.7 5.3E-07 1.1E-11 88.4 14.8 206 197-406 297-526 (579)
88 cd05804 StaR_like StaR_like; a 98.7 0.00012 2.5E-09 72.7 31.5 303 17-338 6-333 (355)
89 KOG3617 WD40 and TPR repeat-co 98.6 1.6E-05 3.5E-10 81.0 24.6 40 493-532 1169-1208(1416)
90 PF12854 PPR_1: PPR repeat 98.6 6.1E-08 1.3E-12 58.6 4.6 34 306-339 1-34 (34)
91 KOG4340 Uncharacterized conser 98.6 1.2E-05 2.7E-10 72.5 20.4 286 99-403 21-335 (459)
92 KOG0624 dsRNA-activated protei 98.6 4.4E-05 9.5E-10 70.4 23.7 297 94-408 44-371 (504)
93 KOG1156 N-terminal acetyltrans 98.6 0.00016 3.6E-09 72.3 29.3 338 62-409 17-436 (700)
94 KOG0548 Molecular co-chaperone 98.6 5.1E-05 1.1E-09 74.2 25.1 393 1-408 17-456 (539)
95 PF04733 Coatomer_E: Coatomer 98.6 9.9E-07 2.2E-11 83.4 13.4 248 25-288 9-269 (290)
96 KOG4162 Predicted calmodulin-b 98.5 0.00069 1.5E-08 69.3 32.8 320 84-408 319-750 (799)
97 PF12854 PPR_1: PPR repeat 98.5 1.2E-07 2.7E-12 57.2 4.0 32 84-115 3-34 (34)
98 PLN02789 farnesyltranstransfer 98.5 4.5E-05 9.7E-10 73.2 22.6 224 152-405 39-300 (320)
99 KOG1070 rRNA processing protei 98.5 2.2E-05 4.7E-10 84.6 21.5 211 75-289 1447-1670(1710)
100 PRK10370 formate-dependent nit 98.5 1.2E-05 2.6E-10 71.8 16.7 149 228-409 22-175 (198)
101 PRK04841 transcriptional regul 98.5 0.00032 6.9E-09 78.9 32.1 324 64-408 386-761 (903)
102 KOG3785 Uncharacterized conser 98.5 0.00013 2.7E-09 67.7 23.1 225 151-413 286-520 (557)
103 KOG0624 dsRNA-activated protei 98.5 0.00041 8.8E-09 64.2 26.2 201 155-380 160-377 (504)
104 PRK14720 transcript cleavage f 98.5 6.8E-05 1.5E-09 80.1 24.4 180 155-389 88-268 (906)
105 KOG3617 WD40 and TPR repeat-co 98.4 0.0002 4.4E-09 73.3 25.9 261 9-303 718-1008(1416)
106 PRK15359 type III secretion sy 98.4 7.4E-06 1.6E-10 69.1 13.8 120 244-388 15-136 (144)
107 KOG0985 Vesicle coat protein c 98.4 0.0013 2.9E-08 69.1 30.9 336 38-402 968-1336(1666)
108 KOG1127 TPR repeat-containing 98.4 0.00011 2.4E-09 76.8 23.2 135 3-141 509-652 (1238)
109 KOG1070 rRNA processing protei 98.4 2.8E-05 6.1E-10 83.8 19.2 212 173-411 1447-1667(1710)
110 KOG0985 Vesicle coat protein c 98.4 0.0017 3.7E-08 68.3 31.3 351 15-399 982-1375(1666)
111 KOG3616 Selective LIM binding 98.4 0.00037 8.1E-09 70.5 25.7 192 27-249 742-935 (1636)
112 PLN02789 farnesyltranstransfer 98.3 9.8E-05 2.1E-09 70.9 20.9 208 19-234 39-267 (320)
113 TIGR03302 OM_YfiO outer membra 98.3 2.5E-05 5.4E-10 72.4 16.3 166 220-407 31-232 (235)
114 TIGR00756 PPR pentatricopeptid 98.3 8.5E-07 1.8E-11 54.4 4.3 35 18-52 1-35 (35)
115 COG4783 Putative Zn-dependent 98.3 0.0002 4.3E-09 69.6 20.5 128 253-405 306-435 (484)
116 PRK15359 type III secretion sy 98.2 1.3E-05 2.9E-10 67.5 11.1 95 314-408 26-122 (144)
117 TIGR00756 PPR pentatricopeptid 98.2 2E-06 4.4E-11 52.6 4.6 35 254-288 1-35 (35)
118 KOG1125 TPR repeat-containing 98.2 3.2E-05 6.8E-10 76.3 14.7 214 26-247 294-523 (579)
119 PRK04841 transcriptional regul 98.2 0.0021 4.5E-08 72.4 31.7 329 27-376 384-763 (903)
120 PRK10370 formate-dependent nit 98.2 6E-05 1.3E-09 67.3 15.5 116 163-282 52-173 (198)
121 KOG1128 Uncharacterized conser 98.2 3.7E-05 8.1E-10 77.8 15.3 214 155-409 403-618 (777)
122 PF13812 PPR_3: Pentatricopept 98.2 2.6E-06 5.6E-11 51.8 4.3 34 17-50 1-34 (34)
123 KOG1128 Uncharacterized conser 98.2 3.4E-05 7.4E-10 78.1 14.2 205 60-281 406-615 (777)
124 KOG2053 Mitochondrial inherita 98.2 0.015 3.2E-07 60.9 33.7 66 346-411 438-506 (932)
125 PRK15179 Vi polysaccharide bio 98.2 0.00024 5.3E-09 75.2 20.5 140 220-384 84-228 (694)
126 COG5010 TadD Flp pilus assembl 98.1 0.00025 5.3E-09 63.5 17.2 155 221-401 66-225 (257)
127 TIGR03302 OM_YfiO outer membra 98.1 0.00023 5E-09 65.9 18.2 96 16-115 32-142 (235)
128 KOG1127 TPR repeat-containing 98.1 0.00017 3.6E-09 75.6 17.6 60 344-403 850-909 (1238)
129 PF13812 PPR_3: Pentatricopept 98.1 6.5E-06 1.4E-10 50.0 4.5 34 253-286 1-34 (34)
130 KOG3081 Vesicle coat complex C 98.1 0.0022 4.8E-08 57.6 21.7 226 149-405 40-269 (299)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 9E-05 2E-09 72.6 14.3 122 124-249 174-295 (395)
132 COG4783 Putative Zn-dependent 98.1 0.00073 1.6E-08 65.8 19.8 121 153-278 309-433 (484)
133 COG5010 TadD Flp pilus assembl 98.0 0.00037 8E-09 62.4 16.1 160 86-250 65-230 (257)
134 PRK15363 pathogenicity island 98.0 0.00015 3.3E-09 60.4 12.6 94 313-406 36-131 (157)
135 KOG3060 Uncharacterized conser 98.0 0.0025 5.3E-08 56.9 20.1 188 163-378 25-225 (289)
136 KOG1914 mRNA cleavage and poly 98.0 0.022 4.8E-07 56.4 32.0 194 202-399 310-531 (656)
137 PRK15179 Vi polysaccharide bio 98.0 0.0012 2.7E-08 70.0 21.4 132 84-216 82-219 (694)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00013 2.8E-09 71.4 13.1 121 257-405 173-295 (395)
139 PF01535 PPR: PPR repeat; Int 97.9 1.1E-05 2.4E-10 47.7 3.4 31 18-48 1-31 (31)
140 TIGR02552 LcrH_SycD type III s 97.9 0.0001 2.3E-09 61.5 10.5 96 313-408 18-115 (135)
141 KOG3060 Uncharacterized conser 97.9 0.0028 6E-08 56.5 19.0 184 30-217 25-223 (289)
142 PRK14720 transcript cleavage f 97.9 0.00095 2.1E-08 71.7 19.2 216 14-264 28-268 (906)
143 TIGR02552 LcrH_SycD type III s 97.9 0.0003 6.6E-09 58.7 12.5 103 187-294 19-124 (135)
144 KOG3081 Vesicle coat complex C 97.9 0.0065 1.4E-07 54.7 20.8 157 189-378 112-276 (299)
145 PF01535 PPR: PPR repeat; Int 97.8 2.2E-05 4.7E-10 46.4 3.6 31 254-284 1-31 (31)
146 cd00189 TPR Tetratricopeptide 97.7 0.00036 7.7E-09 53.4 9.7 92 315-406 3-96 (100)
147 KOG0548 Molecular co-chaperone 97.7 0.0072 1.6E-07 59.7 20.0 348 26-407 11-421 (539)
148 PF09976 TPR_21: Tetratricopep 97.7 0.0023 5.1E-08 54.0 14.6 125 152-278 14-143 (145)
149 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00088 1.9E-08 54.2 10.9 96 313-408 3-106 (119)
150 KOG0553 TPR repeat-containing 97.6 0.00065 1.4E-08 62.1 10.5 100 262-386 90-191 (304)
151 PF09976 TPR_21: Tetratricopep 97.5 0.0026 5.7E-08 53.7 13.3 50 126-175 92-143 (145)
152 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0016 3.5E-08 52.7 11.5 107 254-382 3-114 (119)
153 PF13414 TPR_11: TPR repeat; P 97.5 0.00031 6.8E-09 50.6 6.2 64 343-406 2-66 (69)
154 PF12895 Apc3: Anaphase-promot 97.5 0.00011 2.3E-09 55.6 3.3 78 325-403 2-83 (84)
155 PLN03088 SGT1, suppressor of 97.4 0.003 6.5E-08 62.1 13.8 106 260-390 9-116 (356)
156 PRK15363 pathogenicity island 97.4 0.003 6.5E-08 52.8 11.5 104 142-249 26-130 (157)
157 PF13432 TPR_16: Tetratricopep 97.4 0.00049 1.1E-08 48.9 6.1 56 351-406 4-59 (65)
158 PLN03088 SGT1, suppressor of 97.4 0.001 2.3E-08 65.4 10.1 90 319-408 9-100 (356)
159 cd00189 TPR Tetratricopeptide 97.4 0.0017 3.6E-08 49.6 9.4 91 153-247 3-93 (100)
160 PF04840 Vps16_C: Vps16, C-ter 97.4 0.15 3.4E-06 48.9 31.1 282 18-369 1-287 (319)
161 PF05843 Suf: Suppressor of fo 97.3 0.0038 8.2E-08 59.2 12.8 131 223-378 2-141 (280)
162 PRK02603 photosystem I assembl 97.3 0.0055 1.2E-07 53.5 12.8 91 149-242 34-126 (172)
163 KOG0550 Molecular chaperone (D 97.3 0.0099 2.1E-07 56.8 14.5 273 61-376 58-353 (486)
164 PF12688 TPR_5: Tetratrico pep 97.2 0.0087 1.9E-07 48.2 12.0 109 156-264 7-117 (120)
165 PF08579 RPM2: Mitochondrial r 97.2 0.0055 1.2E-07 47.6 10.0 81 19-100 27-116 (120)
166 PF05843 Suf: Suppressor of fo 97.2 0.0071 1.5E-07 57.3 13.2 139 151-295 2-147 (280)
167 PF14559 TPR_19: Tetratricopep 97.2 0.00057 1.2E-08 49.1 4.3 52 355-406 2-53 (68)
168 PRK02603 photosystem I assembl 97.2 0.0062 1.3E-07 53.2 11.6 130 17-165 35-166 (172)
169 KOG1914 mRNA cleavage and poly 97.2 0.31 6.8E-06 48.6 29.3 361 15-411 18-468 (656)
170 PF10037 MRP-S27: Mitochondria 97.2 0.0077 1.7E-07 59.6 13.1 122 180-301 61-186 (429)
171 PF13432 TPR_16: Tetratricopep 97.1 0.0013 2.9E-08 46.7 5.9 61 318-378 3-65 (65)
172 PF08579 RPM2: Mitochondrial r 97.1 0.0074 1.6E-07 46.9 10.1 81 152-234 27-116 (120)
173 PF13371 TPR_9: Tetratricopept 97.1 0.0015 3.4E-08 47.6 6.1 57 352-408 3-59 (73)
174 PF12895 Apc3: Anaphase-promot 97.1 0.00095 2.1E-08 50.3 5.0 47 164-210 3-50 (84)
175 PF14938 SNAP: Soluble NSF att 97.1 0.058 1.3E-06 51.3 18.3 213 19-259 37-274 (282)
176 CHL00033 ycf3 photosystem I as 97.1 0.011 2.4E-07 51.4 12.2 81 150-233 35-117 (168)
177 PRK15331 chaperone protein Sic 97.1 0.014 3E-07 49.1 11.7 88 319-406 44-133 (165)
178 KOG0553 TPR repeat-containing 97.0 0.0021 4.5E-08 58.9 7.4 87 320-406 89-177 (304)
179 PRK10866 outer membrane biogen 97.0 0.097 2.1E-06 48.4 18.4 55 192-246 182-236 (243)
180 CHL00033 ycf3 photosystem I as 97.0 0.012 2.5E-07 51.2 11.7 92 17-110 35-135 (168)
181 COG4235 Cytochrome c biogenesi 97.0 0.008 1.7E-07 55.4 10.7 103 311-413 155-262 (287)
182 PRK10153 DNA-binding transcrip 96.9 0.056 1.2E-06 55.8 17.5 67 313-379 421-488 (517)
183 PRK10153 DNA-binding transcrip 96.9 0.033 7.2E-07 57.4 15.8 140 147-291 334-489 (517)
184 PF13431 TPR_17: Tetratricopep 96.9 0.0008 1.7E-08 40.5 2.2 32 367-398 2-33 (34)
185 PF14559 TPR_19: Tetratricopep 96.9 0.002 4.3E-08 46.2 4.6 63 323-385 2-66 (68)
186 KOG2796 Uncharacterized conser 96.8 0.068 1.5E-06 48.2 14.6 173 121-295 138-326 (366)
187 PF06239 ECSIT: Evolutionarily 96.8 0.0087 1.9E-07 52.5 8.8 97 6-103 34-153 (228)
188 PF14938 SNAP: Soluble NSF att 96.8 0.086 1.9E-06 50.1 16.6 200 153-374 38-267 (282)
189 PF12688 TPR_5: Tetratrico pep 96.8 0.026 5.6E-07 45.4 10.9 105 23-129 7-116 (120)
190 PF04840 Vps16_C: Vps16, C-ter 96.8 0.56 1.2E-05 45.1 24.3 101 289-402 178-286 (319)
191 PF06239 ECSIT: Evolutionarily 96.8 0.014 3.1E-07 51.2 9.9 95 141-237 36-153 (228)
192 PF13414 TPR_11: TPR repeat; P 96.7 0.0042 9.1E-08 44.6 5.7 65 311-375 2-69 (69)
193 COG4700 Uncharacterized protei 96.7 0.15 3.2E-06 43.6 15.0 95 49-144 86-185 (251)
194 PF10037 MRP-S27: Mitochondria 96.7 0.0081 1.8E-07 59.4 8.9 97 50-146 64-165 (429)
195 KOG1538 Uncharacterized conser 96.6 0.37 8.1E-06 49.1 19.7 76 236-344 730-806 (1081)
196 KOG1538 Uncharacterized conser 96.5 0.072 1.6E-06 53.9 14.1 247 122-409 559-848 (1081)
197 PRK10803 tol-pal system protei 96.5 0.027 5.8E-07 52.5 10.7 96 312-407 143-246 (263)
198 KOG2041 WD40 repeat protein [G 96.4 1.1 2.4E-05 46.3 21.4 248 49-338 689-949 (1189)
199 PF03704 BTAD: Bacterial trans 96.4 0.011 2.4E-07 49.9 6.8 68 346-413 64-136 (146)
200 PF13428 TPR_14: Tetratricopep 96.4 0.0078 1.7E-07 38.7 4.5 42 345-386 2-43 (44)
201 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.017 3.7E-07 56.7 8.5 97 311-410 74-177 (453)
202 smart00299 CLH Clathrin heavy 96.3 0.29 6.2E-06 40.9 15.1 126 188-355 10-136 (140)
203 PRK10866 outer membrane biogen 96.3 0.49 1.1E-05 43.7 17.7 54 352-405 183-239 (243)
204 COG3898 Uncharacterized membra 96.3 1.1 2.5E-05 43.0 26.7 282 64-415 96-398 (531)
205 PF07079 DUF1347: Protein of u 96.2 1.1 2.4E-05 44.0 19.5 66 304-369 448-520 (549)
206 PF13371 TPR_9: Tetratricopept 96.1 0.022 4.8E-07 41.3 6.5 64 319-382 2-67 (73)
207 KOG1130 Predicted G-alpha GTPa 96.1 0.26 5.7E-06 47.4 14.6 59 19-77 17-80 (639)
208 COG4700 Uncharacterized protei 96.0 0.84 1.8E-05 39.2 16.4 100 181-282 85-189 (251)
209 COG4235 Cytochrome c biogenesi 96.0 0.13 2.8E-06 47.7 11.8 110 148-261 154-268 (287)
210 KOG2796 Uncharacterized conser 95.9 0.27 5.9E-06 44.5 13.1 124 55-179 180-315 (366)
211 COG5107 RNA14 Pre-mRNA 3'-end 95.8 2.2 4.7E-05 41.9 24.5 75 7-82 30-106 (660)
212 PRK10803 tol-pal system protei 95.7 0.21 4.6E-06 46.6 12.6 102 255-378 145-251 (263)
213 KOG2280 Vacuolar assembly/sort 95.7 3.4 7.3E-05 43.4 28.2 306 46-401 426-793 (829)
214 COG5107 RNA14 Pre-mRNA 3'-end 95.6 2.5 5.5E-05 41.5 25.9 93 312-405 397-493 (660)
215 PF03704 BTAD: Bacterial trans 95.6 0.11 2.5E-06 43.7 9.6 71 221-291 61-139 (146)
216 PF13525 YfiO: Outer membrane 95.5 0.4 8.7E-06 43.0 13.4 61 22-82 10-72 (203)
217 PF07079 DUF1347: Protein of u 95.5 2.8 6.2E-05 41.3 25.1 50 354-404 472-521 (549)
218 PF13281 DUF4071: Domain of un 95.5 2.8 6E-05 41.0 21.0 184 155-377 146-338 (374)
219 KOG2041 WD40 repeat protein [G 95.4 4 8.7E-05 42.4 23.8 342 2-372 679-1085(1189)
220 PF13424 TPR_12: Tetratricopep 95.3 0.031 6.6E-07 41.2 4.5 60 346-405 7-73 (78)
221 PF09205 DUF1955: Domain of un 95.3 0.86 1.9E-05 36.7 12.4 132 263-410 12-152 (161)
222 KOG2053 Mitochondrial inherita 95.1 5.8 0.00013 42.6 35.5 82 20-105 44-127 (932)
223 PF12921 ATP13: Mitochondrial 95.0 0.26 5.7E-06 40.1 9.4 96 252-356 1-100 (126)
224 PF13424 TPR_12: Tetratricopep 95.0 0.027 5.9E-07 41.5 3.4 60 222-281 5-74 (78)
225 PF13525 YfiO: Outer membrane 95.0 2.6 5.6E-05 37.8 17.6 48 351-398 148-198 (203)
226 PRK15331 chaperone protein Sic 94.9 0.28 6.1E-06 41.4 9.3 92 155-250 42-133 (165)
227 KOG2114 Vacuolar assembly/sort 94.8 6.8 0.00015 41.8 20.6 176 121-339 336-517 (933)
228 COG3898 Uncharacterized membra 94.7 4.4 9.4E-05 39.2 26.5 284 18-338 83-389 (531)
229 KOG1920 IkappaB kinase complex 94.7 3.6 7.9E-05 45.5 19.0 30 85-115 788-819 (1265)
230 KOG3941 Intermediate in Toll s 94.7 0.24 5.1E-06 45.3 8.9 109 6-115 54-186 (406)
231 KOG1130 Predicted G-alpha GTPa 94.6 0.2 4.3E-06 48.2 8.7 93 313-405 236-342 (639)
232 KOG0550 Molecular chaperone (D 94.6 5 0.00011 39.2 19.3 252 24-281 56-349 (486)
233 PF12921 ATP13: Mitochondrial 94.5 0.4 8.7E-06 39.0 9.3 81 16-96 1-96 (126)
234 KOG0543 FKBP-type peptidyl-pro 94.5 0.73 1.6E-05 44.6 12.2 94 314-407 259-355 (397)
235 PF00637 Clathrin: Region in C 94.4 0.0024 5.3E-08 53.8 -4.0 84 191-279 13-96 (143)
236 COG3118 Thioredoxin domain-con 94.3 2.4 5.1E-05 39.5 14.4 142 240-407 121-265 (304)
237 PF04053 Coatomer_WDAD: Coatom 94.2 2.4 5.3E-05 42.9 16.1 131 90-247 297-427 (443)
238 PF09205 DUF1955: Domain of un 94.1 2.6 5.6E-05 34.1 14.2 65 152-217 88-152 (161)
239 KOG1920 IkappaB kinase complex 94.1 5.3 0.00011 44.3 18.7 234 18-276 791-1049(1265)
240 KOG0543 FKBP-type peptidyl-pro 94.1 0.51 1.1E-05 45.7 10.3 87 320-406 216-319 (397)
241 KOG3941 Intermediate in Toll s 94.0 0.51 1.1E-05 43.2 9.6 106 141-248 56-185 (406)
242 KOG2280 Vacuolar assembly/sort 94.0 9.5 0.00021 40.2 24.2 305 20-368 440-794 (829)
243 KOG1585 Protein required for f 94.0 4.6 0.0001 36.5 16.0 206 152-401 33-250 (308)
244 PF13512 TPR_18: Tetratricopep 93.9 1.3 2.8E-05 36.6 11.0 70 319-388 17-92 (142)
245 PF04053 Coatomer_WDAD: Coatom 93.9 0.9 1.9E-05 45.9 12.2 108 254-408 296-403 (443)
246 PF13281 DUF4071: Domain of un 93.8 5.1 0.00011 39.2 16.6 154 125-282 147-334 (374)
247 PLN03098 LPA1 LOW PSII ACCUMUL 93.6 0.64 1.4E-05 46.1 10.2 65 148-214 73-141 (453)
248 PF10300 DUF3808: Protein of u 93.5 2.9 6.2E-05 42.9 15.4 76 103-178 248-333 (468)
249 PF10300 DUF3808: Protein of u 93.4 3.6 7.8E-05 42.2 15.9 158 224-406 190-375 (468)
250 PRK11906 transcriptional regul 93.4 3.6 7.9E-05 41.0 15.0 90 311-401 337-430 (458)
251 COG1729 Uncharacterized protei 93.3 1.1 2.4E-05 41.2 10.5 93 312-407 142-244 (262)
252 smart00299 CLH Clathrin heavy 93.2 4.3 9.4E-05 33.7 15.2 44 56-101 11-54 (140)
253 PF07035 Mic1: Colon cancer-as 93.2 5 0.00011 34.3 16.1 132 206-372 15-148 (167)
254 PRK11906 transcriptional regul 93.1 4.1 9E-05 40.6 14.9 155 236-406 232-400 (458)
255 PF07035 Mic1: Colon cancer-as 92.8 3.6 7.8E-05 35.2 12.4 36 38-73 15-50 (167)
256 KOG4555 TPR repeat-containing 92.8 1.2 2.5E-05 35.9 8.6 90 320-409 51-146 (175)
257 PF00515 TPR_1: Tetratricopept 92.4 0.27 5.9E-06 29.2 3.9 32 345-376 2-33 (34)
258 PF07719 TPR_2: Tetratricopept 92.0 0.44 9.5E-06 28.1 4.5 32 346-377 3-34 (34)
259 PF04184 ST7: ST7 protein; In 91.9 15 0.00033 37.0 18.1 186 153-378 172-380 (539)
260 COG3118 Thioredoxin domain-con 91.9 11 0.00024 35.3 16.0 117 61-179 143-265 (304)
261 COG0457 NrfG FOG: TPR repeat [ 91.8 8.8 0.00019 34.1 21.0 62 315-376 205-268 (291)
262 COG0457 NrfG FOG: TPR repeat [ 91.8 8.9 0.00019 34.1 23.0 220 164-406 37-264 (291)
263 COG4785 NlpI Lipoprotein NlpI, 91.7 6.9 0.00015 34.7 12.8 177 198-407 78-266 (297)
264 PF09613 HrpB1_HrpK: Bacterial 91.6 1.3 2.9E-05 37.3 8.3 53 355-407 21-73 (160)
265 KOG2114 Vacuolar assembly/sort 91.5 23 0.00049 38.1 25.7 138 27-176 378-516 (933)
266 KOG2610 Uncharacterized conser 91.3 4.7 0.0001 38.2 12.1 107 66-174 117-233 (491)
267 PF04097 Nic96: Nup93/Nic96; 91.2 22 0.00048 38.0 19.0 209 18-249 113-354 (613)
268 COG3629 DnrI DNA-binding trans 91.1 1.2 2.6E-05 41.6 8.3 61 346-406 155-215 (280)
269 PF00637 Clathrin: Region in C 90.8 0.37 8.1E-06 40.3 4.4 84 58-145 13-96 (143)
270 COG1729 Uncharacterized protei 90.8 2.1 4.5E-05 39.4 9.3 97 19-116 144-243 (262)
271 PF13176 TPR_7: Tetratricopept 90.7 0.46 1E-05 28.8 3.6 26 380-405 1-26 (36)
272 TIGR02561 HrpB1_HrpK type III 90.7 1.6 3.5E-05 36.2 7.6 54 355-408 21-74 (153)
273 TIGR02508 type_III_yscG type I 90.7 6 0.00013 30.2 9.9 60 127-189 47-106 (115)
274 COG4105 ComL DNA uptake lipopr 90.3 14 0.00031 33.8 16.1 55 352-406 175-232 (254)
275 PF13431 TPR_17: Tetratricopep 90.0 0.36 7.7E-06 28.8 2.6 32 208-242 2-33 (34)
276 PF08631 SPO22: Meiosis protei 90.0 18 0.00038 34.3 20.8 118 28-146 4-148 (278)
277 COG3947 Response regulator con 89.7 17 0.00038 33.9 14.7 98 308-405 223-340 (361)
278 COG4105 ComL DNA uptake lipopr 89.7 16 0.00035 33.5 16.4 22 261-282 175-196 (254)
279 PRK09687 putative lyase; Provi 89.6 19 0.00041 34.1 26.7 195 147-376 65-266 (280)
280 KOG4234 TPR repeat-containing 89.6 2.2 4.7E-05 37.2 7.8 89 320-408 103-198 (271)
281 PF13428 TPR_14: Tetratricopep 89.4 0.98 2.1E-05 28.7 4.5 28 19-46 3-30 (44)
282 KOG4555 TPR repeat-containing 89.2 5.3 0.00011 32.3 9.1 50 63-114 54-103 (175)
283 PF08631 SPO22: Meiosis protei 89.1 18 0.00038 34.3 14.8 62 346-407 86-150 (278)
284 PF09613 HrpB1_HrpK: Bacterial 88.8 13 0.00029 31.4 13.0 90 262-376 19-109 (160)
285 PF13176 TPR_7: Tetratricopept 88.7 1 2.3E-05 27.2 4.1 26 152-177 1-26 (36)
286 COG3629 DnrI DNA-binding trans 88.6 2.9 6.3E-05 39.1 8.7 71 221-291 152-230 (280)
287 COG4649 Uncharacterized protei 87.7 10 0.00022 32.4 10.3 118 130-249 69-194 (221)
288 KOG2610 Uncharacterized conser 87.5 8.3 0.00018 36.6 10.7 37 265-302 115-151 (491)
289 PF10602 RPN7: 26S proteasome 87.4 10 0.00023 33.0 11.1 96 151-249 37-140 (177)
290 cd00923 Cyt_c_Oxidase_Va Cytoc 87.3 3.8 8.2E-05 31.1 6.9 62 33-96 23-84 (103)
291 KOG1941 Acetylcholine receptor 87.1 10 0.00022 36.4 11.2 221 27-248 16-272 (518)
292 PF00515 TPR_1: Tetratricopept 86.7 1.5 3.3E-05 25.8 3.9 32 254-287 2-33 (34)
293 PF04184 ST7: ST7 protein; In 86.7 15 0.00033 37.0 12.6 56 350-405 265-322 (539)
294 PF13512 TPR_18: Tetratricopep 86.6 10 0.00023 31.4 9.9 61 157-217 17-79 (142)
295 PF13181 TPR_8: Tetratricopept 86.1 1.4 3.1E-05 25.9 3.6 31 346-376 3-33 (34)
296 PF02284 COX5A: Cytochrome c o 85.9 4.2 9.2E-05 31.2 6.6 60 35-96 28-87 (108)
297 KOG0890 Protein kinase of the 85.7 96 0.0021 37.9 22.5 305 93-409 1388-1733(2382)
298 KOG1941 Acetylcholine receptor 85.6 21 0.00046 34.4 12.4 14 505-521 405-418 (518)
299 TIGR02561 HrpB1_HrpK type III 85.3 16 0.00035 30.4 10.2 91 197-290 22-114 (153)
300 PF02259 FAT: FAT domain; Int 85.2 39 0.00085 33.0 15.9 68 342-409 144-215 (352)
301 KOG0276 Vesicle coat complex C 85.1 30 0.00064 35.8 13.8 164 118-339 580-748 (794)
302 PF13170 DUF4003: Protein of u 84.9 14 0.0003 35.2 11.4 48 68-116 78-131 (297)
303 PF10602 RPN7: 26S proteasome 84.8 9 0.0002 33.4 9.4 64 18-81 37-102 (177)
304 KOG1585 Protein required for f 84.3 33 0.00071 31.3 13.3 52 223-275 191-249 (308)
305 PF02259 FAT: FAT domain; Int 83.5 47 0.001 32.4 20.4 63 220-282 144-213 (352)
306 COG4649 Uncharacterized protei 83.4 28 0.00061 29.9 12.6 121 263-406 68-195 (221)
307 PF13170 DUF4003: Protein of u 82.6 17 0.00038 34.6 11.0 123 166-290 78-219 (297)
308 PRK09687 putative lyase; Provi 82.3 46 0.00099 31.5 26.7 231 50-299 35-278 (280)
309 PF02284 COX5A: Cytochrome c o 82.2 9 0.00019 29.5 7.0 49 337-385 38-86 (108)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 82.2 9.1 0.0002 29.1 6.9 49 337-385 35-83 (103)
311 PF07721 TPR_4: Tetratricopept 81.2 2.1 4.5E-05 23.6 2.6 23 380-402 3-25 (26)
312 PF07719 TPR_2: Tetratricopept 81.0 3.6 7.9E-05 23.9 3.9 27 255-281 3-29 (34)
313 PF13374 TPR_10: Tetratricopep 80.6 4.1 8.9E-05 25.1 4.3 28 151-178 3-30 (42)
314 TIGR02508 type_III_yscG type I 80.2 25 0.00053 27.1 8.9 85 201-291 21-105 (115)
315 KOG0686 COP9 signalosome, subu 79.6 60 0.0013 32.0 13.1 162 222-405 150-331 (466)
316 PF14853 Fis1_TPR_C: Fis1 C-te 79.5 5.3 0.00012 26.7 4.5 30 350-379 7-36 (53)
317 PF13374 TPR_10: Tetratricopep 78.9 4.7 0.0001 24.8 4.2 28 254-281 3-30 (42)
318 KOG0276 Vesicle coat complex C 78.5 15 0.00032 37.9 9.1 82 149-247 665-746 (794)
319 KOG4570 Uncharacterized conser 78.3 9 0.0002 36.0 7.1 52 165-216 115-166 (418)
320 KOG1586 Protein required for f 77.9 54 0.0012 29.7 14.5 60 319-378 161-229 (288)
321 KOG1258 mRNA processing protei 77.7 93 0.002 32.3 26.0 341 17-399 45-421 (577)
322 KOG4234 TPR repeat-containing 77.4 43 0.00093 29.6 10.4 95 262-378 104-202 (271)
323 KOG3364 Membrane protein invol 77.3 15 0.00032 30.1 7.1 76 357-459 48-125 (149)
324 KOG4570 Uncharacterized conser 77.1 5.7 0.00012 37.3 5.5 104 9-115 56-162 (418)
325 PF13174 TPR_6: Tetratricopept 76.8 5 0.00011 23.1 3.6 24 353-376 9-32 (33)
326 PF11207 DUF2989: Protein of u 76.1 23 0.00051 31.2 8.8 75 167-242 123-198 (203)
327 KOG4648 Uncharacterized conser 76.0 6.2 0.00013 37.5 5.5 23 356-378 177-199 (536)
328 PF11207 DUF2989: Protein of u 76.0 22 0.00048 31.4 8.5 68 69-138 123-197 (203)
329 PF07721 TPR_4: Tetratricopept 75.9 5.6 0.00012 21.8 3.3 22 315-336 4-25 (26)
330 cd08819 CARD_MDA5_2 Caspase ac 75.2 23 0.00049 26.5 7.1 67 204-274 21-87 (88)
331 PRK11619 lytic murein transgly 75.0 1.3E+02 0.0027 32.5 31.4 54 317-370 317-372 (644)
332 PF04190 DUF410: Protein of un 74.9 73 0.0016 29.7 16.0 96 160-256 20-124 (260)
333 PF13181 TPR_8: Tetratricopept 73.9 6.8 0.00015 22.8 3.7 27 380-406 3-29 (34)
334 smart00028 TPR Tetratricopepti 73.9 7.2 0.00016 21.5 3.9 21 353-373 10-30 (34)
335 PF04910 Tcf25: Transcriptiona 73.6 98 0.0021 30.6 15.3 127 267-406 8-167 (360)
336 KOG2396 HAT (Half-A-TPR) repea 73.6 1.1E+02 0.0024 31.2 29.4 226 170-404 302-556 (568)
337 PF13174 TPR_6: Tetratricopept 73.3 4.3 9.2E-05 23.4 2.6 28 380-407 2-29 (33)
338 KOG1258 mRNA processing protei 73.1 1.2E+02 0.0027 31.5 27.1 343 20-393 82-490 (577)
339 PF09477 Type_III_YscG: Bacter 72.7 43 0.00094 26.1 8.9 79 199-282 20-98 (116)
340 PF13929 mRNA_stabil: mRNA sta 72.0 64 0.0014 30.4 10.9 123 20-145 134-264 (292)
341 COG2976 Uncharacterized protei 71.9 70 0.0015 28.2 13.5 130 152-283 56-189 (207)
342 COG2976 Uncharacterized protei 71.8 70 0.0015 28.2 14.6 92 260-377 96-192 (207)
343 PRK10941 hypothetical protein; 71.4 21 0.00046 33.5 8.0 60 347-406 184-243 (269)
344 KOG1464 COP9 signalosome, subu 71.1 81 0.0018 29.2 11.1 128 152-281 67-219 (440)
345 PF13762 MNE1: Mitochondrial s 70.5 55 0.0012 27.3 9.2 77 225-301 42-128 (145)
346 KOG4648 Uncharacterized conser 69.3 15 0.00033 34.9 6.4 75 261-337 105-183 (536)
347 PF14853 Fis1_TPR_C: Fis1 C-te 68.7 32 0.00069 23.0 6.4 50 381-457 4-53 (53)
348 PF09477 Type_III_YscG: Bacter 68.1 56 0.0012 25.5 9.2 50 129-180 50-99 (116)
349 COG4785 NlpI Lipoprotein NlpI, 67.8 93 0.002 28.0 16.2 164 150-338 99-263 (297)
350 KOG4642 Chaperone-dependent E3 67.7 22 0.00049 32.2 6.8 81 326-406 24-106 (284)
351 KOG3824 Huntingtin interacting 67.3 14 0.00031 34.6 5.7 47 355-401 127-173 (472)
352 COG1747 Uncharacterized N-term 67.1 1.6E+02 0.0034 30.3 19.8 172 149-352 65-247 (711)
353 COG4455 ImpE Protein of avirul 66.9 22 0.00048 31.7 6.5 65 314-378 3-69 (273)
354 PF06552 TOM20_plant: Plant sp 66.3 89 0.0019 27.2 9.9 91 315-412 31-141 (186)
355 PF11663 Toxin_YhaV: Toxin wit 66.2 8.1 0.00018 31.4 3.5 31 30-62 108-138 (140)
356 KOG4279 Serine/threonine prote 66.2 62 0.0013 34.5 10.4 182 150-377 201-399 (1226)
357 PRK15180 Vi polysaccharide bio 63.8 88 0.0019 31.6 10.5 93 321-413 332-426 (831)
358 PRK13800 putative oxidoreducta 63.0 2.7E+02 0.0058 31.6 25.0 157 114-281 723-880 (897)
359 PF08311 Mad3_BUB1_I: Mad3/BUB 62.7 59 0.0013 26.4 8.1 72 329-403 50-124 (126)
360 PHA02875 ankyrin repeat protei 62.6 1.3E+02 0.0028 30.2 12.5 20 349-368 204-223 (413)
361 PF10366 Vps39_1: Vacuolar sor 62.5 45 0.00097 26.3 7.1 25 315-339 42-66 (108)
362 KOG2066 Vacuolar assembly/sort 62.2 2.3E+02 0.0051 30.6 25.0 52 25-78 364-418 (846)
363 KOG2063 Vacuolar assembly/sort 62.1 2.1E+02 0.0046 31.8 14.0 27 152-178 506-532 (877)
364 PF13929 mRNA_stabil: mRNA sta 62.1 1.2E+02 0.0026 28.6 10.7 112 164-277 142-262 (292)
365 smart00386 HAT HAT (Half-A-TPR 61.5 18 0.00038 20.4 3.7 29 358-386 1-29 (33)
366 COG4455 ImpE Protein of avirul 61.5 68 0.0015 28.8 8.5 74 187-263 3-82 (273)
367 PF06552 TOM20_plant: Plant sp 60.9 33 0.00072 29.7 6.4 49 345-393 29-84 (186)
368 KOG4077 Cytochrome c oxidase, 59.9 47 0.001 26.8 6.5 33 46-78 78-110 (149)
369 PF14561 TPR_20: Tetratricopep 59.6 24 0.00051 26.7 4.9 43 365-407 9-51 (90)
370 KOG2066 Vacuolar assembly/sort 59.5 2.6E+02 0.0057 30.3 22.3 166 63-253 367-536 (846)
371 TIGR03504 FimV_Cterm FimV C-te 59.1 17 0.00037 23.2 3.4 24 23-46 5-28 (44)
372 PF10579 Rapsyn_N: Rapsyn N-te 59.1 24 0.00052 25.8 4.4 45 356-400 18-65 (80)
373 COG5159 RPN6 26S proteasome re 58.9 1.3E+02 0.0028 28.2 10.1 128 261-405 11-152 (421)
374 TIGR03504 FimV_Cterm FimV C-te 58.8 21 0.00046 22.7 3.8 24 259-282 5-28 (44)
375 PF13762 MNE1: Mitochondrial s 56.8 80 0.0017 26.4 7.8 53 148-200 77-130 (145)
376 PF08311 Mad3_BUB1_I: Mad3/BUB 56.7 1.1E+02 0.0023 24.9 9.1 44 271-337 81-124 (126)
377 cd08819 CARD_MDA5_2 Caspase ac 56.1 69 0.0015 24.0 6.5 39 100-139 48-86 (88)
378 PRK15180 Vi polysaccharide bio 55.7 1.3E+02 0.0027 30.5 10.1 115 64-180 301-421 (831)
379 KOG2396 HAT (Half-A-TPR) repea 55.7 2.5E+02 0.0053 28.8 16.8 235 36-281 301-558 (568)
380 KOG1308 Hsp70-interacting prot 55.2 7.1 0.00015 37.2 1.7 90 324-413 126-217 (377)
381 KOG0376 Serine-threonine phosp 54.1 16 0.00035 36.6 3.9 87 319-405 11-99 (476)
382 PF14863 Alkyl_sulf_dimr: Alky 53.6 63 0.0014 26.9 6.8 63 328-393 57-119 (141)
383 PF14669 Asp_Glu_race_2: Putat 52.9 1.6E+02 0.0035 25.9 13.3 91 147-247 104-206 (233)
384 KOG1464 COP9 signalosome, subu 52.6 2E+02 0.0043 26.8 14.4 57 190-249 150-218 (440)
385 PF11768 DUF3312: Protein of u 52.1 1.9E+02 0.0041 30.0 11.0 128 225-364 411-543 (545)
386 PRK13342 recombination factor 51.6 2.6E+02 0.0057 28.2 12.4 43 152-194 229-274 (413)
387 PF11846 DUF3366: Domain of un 51.5 53 0.0011 29.0 6.6 37 340-376 140-176 (193)
388 PF10366 Vps39_1: Vacuolar sor 51.3 1.2E+02 0.0026 23.9 8.4 27 152-178 41-67 (108)
389 PF07163 Pex26: Pex26 protein; 50.9 1.5E+02 0.0032 27.9 9.1 86 156-245 89-181 (309)
390 KOG4077 Cytochrome c oxidase, 50.0 88 0.0019 25.3 6.6 48 338-385 78-125 (149)
391 COG3947 Response regulator con 49.8 40 0.00086 31.6 5.4 48 60-109 287-334 (361)
392 KOG1550 Extracellular protein 49.1 3.5E+02 0.0076 28.6 17.1 131 149-284 287-428 (552)
393 KOG1586 Protein required for f 49.0 1.9E+02 0.0042 26.4 9.3 25 354-378 164-188 (288)
394 PF11846 DUF3366: Domain of un 48.5 51 0.0011 29.1 6.1 52 64-115 120-171 (193)
395 PRK10564 maltose regulon perip 48.3 35 0.00075 32.2 4.9 43 254-296 258-300 (303)
396 KOG4507 Uncharacterized conser 47.9 58 0.0012 33.7 6.6 74 316-389 646-721 (886)
397 PRK10564 maltose regulon perip 46.9 37 0.0008 32.1 4.9 39 152-190 259-297 (303)
398 PF11663 Toxin_YhaV: Toxin wit 46.8 24 0.00053 28.7 3.2 32 162-195 107-138 (140)
399 PF11848 DUF3368: Domain of un 46.8 67 0.0015 20.8 4.8 33 28-60 13-45 (48)
400 PF10579 Rapsyn_N: Rapsyn N-te 46.4 52 0.0011 24.1 4.5 15 226-240 47-61 (80)
401 PF11838 ERAP1_C: ERAP1-like C 45.6 2.8E+02 0.0061 26.6 16.0 87 201-287 146-236 (324)
402 PHA02875 ankyrin repeat protei 45.6 3.3E+02 0.0071 27.3 17.3 57 229-289 172-231 (413)
403 PF11848 DUF3368: Domain of un 45.5 83 0.0018 20.4 5.1 32 161-192 13-44 (48)
404 KOG2034 Vacuolar sorting prote 45.1 4.7E+02 0.01 29.0 14.3 53 343-403 503-555 (911)
405 PRK10941 hypothetical protein; 45.1 1.7E+02 0.0037 27.5 9.0 66 315-380 184-251 (269)
406 KOG1498 26S proteasome regulat 45.0 3.2E+02 0.007 27.1 18.4 184 220-421 50-255 (439)
407 smart00777 Mad3_BUB1_I Mad3/BU 44.9 1.5E+02 0.0032 24.1 7.5 68 329-402 50-123 (125)
408 PF07163 Pex26: Pex26 protein; 44.8 2E+02 0.0044 27.0 9.0 12 131-142 170-181 (309)
409 PF10345 Cohesin_load: Cohesin 44.7 4.3E+02 0.0092 28.4 15.9 182 203-405 39-252 (608)
410 COG2178 Predicted RNA-binding 44.7 2.1E+02 0.0046 25.2 8.7 92 315-406 32-149 (204)
411 cd08326 CARD_CASP9 Caspase act 43.9 53 0.0012 24.4 4.5 31 103-133 45-75 (84)
412 KOG1550 Extracellular protein 43.0 4.3E+02 0.0093 27.9 16.1 183 201-412 228-431 (552)
413 PF14044 NETI: NETI protein 42.1 19 0.00042 24.1 1.6 17 445-461 10-26 (57)
414 PF14689 SPOB_a: Sensor_kinase 41.5 42 0.00091 23.2 3.4 30 149-178 22-51 (62)
415 KOG2034 Vacuolar sorting prote 41.5 5.3E+02 0.012 28.6 23.0 173 94-278 364-555 (911)
416 KOG2297 Predicted translation 41.2 3.3E+02 0.0071 26.0 12.9 70 200-274 270-342 (412)
417 PF12862 Apc5: Anaphase-promot 40.9 87 0.0019 23.7 5.5 53 354-406 8-69 (94)
418 PF14689 SPOB_a: Sensor_kinase 38.4 52 0.0011 22.8 3.5 30 252-281 22-51 (62)
419 KOG0292 Vesicle coat complex C 37.2 32 0.00069 37.3 3.2 49 321-372 652-700 (1202)
420 COG4976 Predicted methyltransf 37.1 51 0.0011 29.8 4.0 58 321-378 4-63 (287)
421 COG5108 RPO41 Mitochondrial DN 35.9 1.8E+02 0.0038 30.9 8.0 22 93-114 33-54 (1117)
422 PF09986 DUF2225: Uncharacteri 35.8 3.1E+02 0.0066 24.7 9.0 64 346-409 120-196 (214)
423 PF12862 Apc5: Anaphase-promot 34.8 2E+02 0.0042 21.8 6.6 56 27-82 8-71 (94)
424 COG0735 Fur Fe2+/Zn2+ uptake r 34.4 1.3E+02 0.0027 25.2 5.9 61 41-103 10-70 (145)
425 PF04034 DUF367: Domain of unk 34.4 2.5E+02 0.0055 22.8 7.6 65 307-371 61-126 (127)
426 PF08967 DUF1884: Domain of un 34.1 50 0.0011 24.2 2.8 27 438-464 7-33 (85)
427 PF11525 CopK: Copper resistan 34.1 17 0.00037 25.4 0.5 21 524-544 8-28 (73)
428 cd08332 CARD_CASP2 Caspase act 33.9 95 0.0021 23.4 4.6 27 135-161 50-76 (90)
429 COG0735 Fur Fe2+/Zn2+ uptake r 33.5 2.1E+02 0.0045 23.9 7.1 61 174-237 10-70 (145)
430 KOG0292 Vesicle coat complex C 33.3 2.2E+02 0.0048 31.3 8.4 132 231-408 652-783 (1202)
431 KOG4507 Uncharacterized conser 32.5 1.8E+02 0.0038 30.4 7.3 111 169-282 592-705 (886)
432 KOG4521 Nuclear pore complex, 32.4 8.4E+02 0.018 28.2 14.3 92 226-338 924-1047(1480)
433 PF10255 Paf67: RNA polymerase 32.3 2.5E+02 0.0053 28.2 8.3 56 122-177 125-191 (404)
434 PRK11639 zinc uptake transcrip 32.1 1.3E+02 0.0027 26.0 5.7 61 43-105 17-77 (169)
435 PF10345 Cohesin_load: Cohesin 32.0 6.7E+02 0.014 26.9 27.7 84 31-114 153-251 (608)
436 cd08326 CARD_CASP9 Caspase act 31.8 2.2E+02 0.0047 21.2 6.9 61 206-272 20-80 (84)
437 COG1747 Uncharacterized N-term 31.6 6.1E+02 0.013 26.3 19.0 86 22-113 71-156 (711)
438 COG5159 RPN6 26S proteasome re 31.6 4.5E+02 0.0098 24.9 13.3 32 157-188 10-41 (421)
439 cd07153 Fur_like Ferric uptake 31.5 1.2E+02 0.0025 24.0 5.1 47 22-68 5-51 (116)
440 PF15469 Sec5: Exocyst complex 31.4 3.5E+02 0.0076 23.5 8.8 25 394-418 155-179 (182)
441 PRK11639 zinc uptake transcrip 31.4 1.9E+02 0.0042 24.8 6.7 18 200-217 40-57 (169)
442 PF12583 TPPII_N: Tripeptidyl 31.1 1.8E+02 0.0038 23.8 5.7 37 354-390 86-122 (139)
443 KOG0545 Aryl-hydrocarbon recep 30.9 3.9E+02 0.0085 24.7 8.4 87 320-406 186-292 (329)
444 PRK11619 lytic murein transgly 30.8 7.2E+02 0.016 26.9 35.6 367 25-413 107-511 (644)
445 KOG2581 26S proteasome regulat 30.6 5.6E+02 0.012 25.6 15.3 123 161-287 137-279 (493)
446 KOG0403 Neoplastic transformat 30.4 2.9E+02 0.0063 27.9 8.1 103 123-232 513-626 (645)
447 smart00777 Mad3_BUB1_I Mad3/BU 29.3 3.1E+02 0.0067 22.3 9.0 70 239-337 50-124 (125)
448 PF04762 IKI3: IKI3 family; I 29.3 7.8E+02 0.017 28.1 12.6 33 221-253 811-845 (928)
449 COG4976 Predicted methyltransf 29.0 1E+02 0.0022 27.9 4.5 55 354-408 5-59 (287)
450 PRK13184 pknD serine/threonine 28.6 9.2E+02 0.02 27.5 26.0 323 19-372 477-868 (932)
451 PF11817 Foie-gras_1: Foie gra 28.4 2.9E+02 0.0063 25.5 7.9 58 189-247 182-243 (247)
452 KOG4521 Nuclear pore complex, 28.4 9.8E+02 0.021 27.7 12.8 109 27-137 930-1072(1480)
453 PF09670 Cas_Cas02710: CRISPR- 28.3 6.1E+02 0.013 25.3 11.9 56 158-214 139-198 (379)
454 PF04190 DUF410: Protein of un 27.9 5E+02 0.011 24.2 15.2 142 26-179 19-170 (260)
455 KOG2297 Predicted translation 27.6 2.4E+02 0.0052 26.9 6.8 20 150-169 321-340 (412)
456 PF08424 NRDE-2: NRDE-2, neces 27.5 5.7E+02 0.012 24.7 14.1 117 167-287 48-189 (321)
457 cd00280 TRFH Telomeric Repeat 27.1 2.3E+02 0.0049 24.8 6.1 27 352-379 119-145 (200)
458 PRK13800 putative oxidoreducta 26.6 9.9E+02 0.021 27.2 25.6 92 310-404 787-878 (897)
459 TIGR02270 conserved hypothetic 26.6 6.8E+02 0.015 25.3 23.6 233 59-338 45-278 (410)
460 KOG1498 26S proteasome regulat 26.5 6.5E+02 0.014 25.0 12.5 196 132-351 25-255 (439)
461 PF02607 B12-binding_2: B12 bi 26.2 1E+02 0.0023 22.2 3.7 36 28-63 12-47 (79)
462 KOG0686 COP9 signalosome, subu 26.0 6.8E+02 0.015 25.1 13.2 156 19-178 152-332 (466)
463 KOG4642 Chaperone-dependent E3 25.6 5.4E+02 0.012 23.8 9.8 84 264-372 21-106 (284)
464 cd08332 CARD_CASP2 Caspase act 25.3 3E+02 0.0065 20.7 6.8 60 206-271 24-83 (90)
465 cd00280 TRFH Telomeric Repeat 25.0 4.8E+02 0.01 22.9 8.1 37 317-353 116-152 (200)
466 cd07153 Fur_like Ferric uptake 25.0 1.8E+02 0.0039 22.9 5.1 46 156-201 6-51 (116)
467 PF06957 COPI_C: Coatomer (COP 24.9 1.2E+02 0.0025 30.6 4.6 40 338-377 292-333 (422)
468 KOG3364 Membrane protein invol 24.9 4E+02 0.0087 22.1 6.8 66 49-115 29-98 (149)
469 KOG0991 Replication factor C, 24.8 5.5E+02 0.012 23.6 11.1 139 125-289 136-274 (333)
470 COG5108 RPO41 Mitochondrial DN 24.7 5.4E+02 0.012 27.6 9.2 77 258-356 33-115 (1117)
471 cd08323 CARD_APAF1 Caspase act 24.6 2.1E+02 0.0045 21.4 4.9 26 135-160 44-69 (86)
472 PF01475 FUR: Ferric uptake re 24.4 1.3E+02 0.0028 24.0 4.2 45 22-66 12-56 (120)
473 PF07064 RIC1: RIC1; InterPro 24.3 5.9E+02 0.013 23.8 13.9 62 155-216 184-251 (258)
474 KOG4567 GTPase-activating prot 24.3 6.4E+02 0.014 24.2 8.9 82 73-157 264-356 (370)
475 PF09454 Vps23_core: Vps23 cor 24.0 1.3E+02 0.0029 21.0 3.6 32 51-82 7-38 (65)
476 TIGR03581 EF_0839 conserved hy 23.9 1.7E+02 0.0036 26.2 4.8 62 186-248 164-234 (236)
477 PF07720 TPR_3: Tetratricopept 23.9 1.8E+02 0.0038 17.6 4.3 13 354-366 11-23 (36)
478 COG2909 MalT ATP-dependent tra 23.7 1E+03 0.023 26.5 24.2 184 100-286 427-651 (894)
479 PRK13342 recombination factor 23.6 7.7E+02 0.017 24.8 17.0 111 167-297 154-274 (413)
480 KOG0551 Hsp90 co-chaperone CNS 23.6 4E+02 0.0087 25.9 7.5 90 315-404 84-179 (390)
481 PF08424 NRDE-2: NRDE-2, neces 23.5 6.8E+02 0.015 24.2 16.4 83 15-100 17-111 (321)
482 PF10155 DUF2363: Uncharacteri 23.2 4.1E+02 0.0089 21.6 10.4 106 5-114 8-124 (126)
483 PF10255 Paf67: RNA polymerase 23.0 4.6E+02 0.0099 26.4 8.3 59 223-281 123-192 (404)
484 TIGR02328 conserved hypothetic 22.8 1E+02 0.0022 24.2 2.9 26 439-464 48-73 (120)
485 KOG0376 Serine-threonine phosp 22.8 1.9E+02 0.0042 29.3 5.6 102 196-302 15-119 (476)
486 KOG0991 Replication factor C, 22.5 6.1E+02 0.013 23.3 11.7 58 138-197 227-284 (333)
487 COG2912 Uncharacterized conser 22.4 2.5E+02 0.0055 26.2 6.0 55 352-406 189-243 (269)
488 PF12554 MOZART1: Mitotic-spin 22.1 1.5E+02 0.0033 19.3 3.2 28 24-51 11-38 (48)
489 KOG3807 Predicted membrane pro 21.8 1.1E+02 0.0024 29.3 3.5 111 31-155 230-352 (556)
490 KOG3636 Uncharacterized conser 21.8 6.2E+02 0.014 25.5 8.6 79 84-162 179-272 (669)
491 KOG2300 Uncharacterized conser 21.6 9E+02 0.02 24.9 20.5 126 157-282 330-474 (629)
492 smart00544 MA3 Domain in DAP-5 21.4 4E+02 0.0086 20.7 8.1 21 156-176 8-28 (113)
493 PRK14700 recombination factor 21.4 7.3E+02 0.016 23.8 9.9 51 149-199 122-175 (300)
494 smart00544 MA3 Domain in DAP-5 21.4 4E+02 0.0086 20.7 9.4 57 124-180 7-67 (113)
495 KOG2471 TPR repeat-containing 21.3 9.2E+02 0.02 24.9 13.5 112 230-356 248-381 (696)
496 PF01475 FUR: Ferric uptake re 21.2 1.6E+02 0.0034 23.5 4.1 45 155-199 12-56 (120)
497 PF11817 Foie-gras_1: Foie gra 21.2 3.8E+02 0.0083 24.7 7.2 60 221-280 177-245 (247)
498 PRK09857 putative transposase; 21.0 5.7E+02 0.012 24.4 8.4 65 347-411 209-273 (292)
499 smart00804 TAP_C C-terminal do 21.0 94 0.002 21.7 2.3 23 163-185 38-61 (63)
500 PF11768 DUF3312: Protein of u 20.8 7.7E+02 0.017 25.8 9.5 24 92-115 412-435 (545)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.3e-111 Score=899.47 Aligned_cols=530 Identities=37% Similarity=0.655 Sum_probs=495.7
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHH
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREG-IGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNT 93 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (548)
++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.++|..|.+.| +.||..+||.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 355678888888888888888888888887654 67888888888888888888888888888888887 8888888888
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHH--------------------------------
Q 038673 94 MIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGL-------------------------------- 141 (548)
Q Consensus 94 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~-------------------------------- 141 (548)
|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|.++
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 888888888888888888888887777777777777666666666555
Q ss_pred --------------------------------------HccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC
Q 038673 142 --------------------------------------FNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183 (548)
Q Consensus 142 --------------------------------------f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 183 (548)
|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 555566789999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHH
Q 038673 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGF 263 (548)
Q Consensus 184 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 263 (548)
|..||++++.+|++.|++++|.++|+.|.+.|+.| +..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~--d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL--DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC--CeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC------------ccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 264 AMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL------------KCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 264 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~------------~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
+++|+.++|+++|++|.+.|+.||..||+++|.+|++.|. .++|+.|+..+|++|+++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999999999999996 4579999999999999999999999999
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 038673 332 LKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411 (548)
Q Consensus 332 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 411 (548)
.+++++|+.+|+..+|++|+.+|..+|+++.|+.+++++.++.|++..+|..|+++|++.|+|++|.++++.|+++|+++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHhhhhhhhhHHHHHHHhcc
Q 038673 412 NPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRILMTHSEKLALAFGLL 491 (548)
Q Consensus 412 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~ 491 (548)
.|++|||+++ +++|.|++|+..||+.++|++.+.++..+|++.||.||+.++++++++++|+..+.+||||||++||++
T Consensus 562 ~~g~s~i~~~-~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~ 640 (697)
T PLN03081 562 HPACTWIEVK-KQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLI 640 (697)
T ss_pred CCCeeEEEEC-CeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCc
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEecccccCCCcchhhhhhhhcCceEEEecCCcccccccccccCCCCC
Q 038673 492 TTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFHHFQDGKCSCGNYW 548 (548)
Q Consensus 492 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~~s~~~~w 548 (548)
++|+|.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 641 ~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 641 NTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred cCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-110 Score=918.05 Aligned_cols=539 Identities=39% Similarity=0.759 Sum_probs=519.7
Q ss_pred CCcchHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHH
Q 038673 1 MDSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTIL 80 (548)
Q Consensus 1 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 80 (548)
++++|+++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+
T Consensus 237 ~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHH-------------------
Q 038673 81 LGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGL------------------- 141 (548)
Q Consensus 81 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~------------------- 141 (548)
.| +.||..+||+|+.+|+++|++++|.++|++|.+||.++||++|.+|++.|++++|.++
T Consensus 317 ~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 317 TG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred hC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 99 9999999999999999999999999999999999999999999888888887777776
Q ss_pred ---------------------------------------------------HccCCCCChhHHHHHHHHHHHCCChhHHH
Q 038673 142 ---------------------------------------------------FNELPLKDKVAWTAMVTGYVQNAKPREAI 170 (548)
Q Consensus 142 ---------------------------------------------------f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 170 (548)
|++|.++|+++||+||.+|+++|+.++|+
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence 44455678888999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 038673 171 EYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 171 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 250 (548)
.+|++|.. +++||..||++++.+|++.|+++.+.++|..+.+.|+.| +..++|+|+++|+++|++++|.++|+.+ .
T Consensus 476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~--~~~~~naLi~~y~k~G~~~~A~~~f~~~-~ 551 (857)
T PLN03077 476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF--DGFLPNALLDLYVRCGRMNYAWNQFNSH-E 551 (857)
T ss_pred HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc--cceechHHHHHHHHcCCHHHHHHHHHhc-C
Confidence 99999975 589999999999999999999999999999999999995 9999999999999999999999999999 9
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC------------ccCCCCcCHHHHHHH
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL------------KCYGVSPSTDHYACM 318 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~------------~~~~~~p~~~~~~~l 318 (548)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+++|.+|++.|+ ..+|+.|+..+|++|
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999996 378999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 038673 319 VDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVS 398 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 398 (548)
+++|++.|++++|.+++++|+++||..+|++|+.+|..+++.+.|+.+.+++++++|+++..|..|+++|++.|+|++|.
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHhhhhh
Q 038673 399 RVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRILM 478 (548)
Q Consensus 399 ~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~ 478 (548)
++++.|+++|++++||+|||+++ +++|.|++|+.+||+.++|+..|.++..+|++.||.||++.++ ++++++|+..++
T Consensus 712 ~vr~~M~~~g~~k~~g~s~ie~~-~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~ 789 (857)
T PLN03077 712 RVRKTMRENGLTVDPGCSWVEVK-GKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFC 789 (857)
T ss_pred HHHHHHHHcCCCCCCCccEEEEC-CEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999888 558889999999
Q ss_pred hhhHHHHHHHhccCCCCCCcEEEEecccccCCCcchhhhhhhhcCceEEEecCCcccccccccccCCC
Q 038673 479 THSEKLALAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNMRFHHFQDGKCSCGN 546 (548)
Q Consensus 479 ~~~e~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~~s~~~ 546 (548)
+||||||++|||++||+|.||||+||||+|+|||+++|+||++.+|+|||||.+|||||+||+|||+|
T Consensus 790 ~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 790 GHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred hccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.7e-66 Score=565.78 Aligned_cols=519 Identities=28% Similarity=0.425 Sum_probs=447.2
Q ss_pred CCcchHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHH
Q 038673 1 MDSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTIL 80 (548)
Q Consensus 1 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 80 (548)
++++|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.++|..+++
T Consensus 136 ~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred ChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHH----------------------
Q 038673 81 LGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESA---------------------- 138 (548)
Q Consensus 81 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A---------------------- 138 (548)
.| +.||..++|+|+.+|+++|++++|.++|++|++||.++||++|.+|++.|++++|
T Consensus 216 ~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l 294 (857)
T PLN03077 216 FG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294 (857)
T ss_pred cC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 99 9999999999999999999999999999999988888888888777665555554
Q ss_pred ------------------------------------------------HHHHccCCCCChhHHHHHHHHHHHCCChhHHH
Q 038673 139 ------------------------------------------------GGLFNELPLKDKVAWTAMVTGYVQNAKPREAI 170 (548)
Q Consensus 139 ------------------------------------------------~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 170 (548)
.++|++|..+|+++||+||.+|++.|++++|+
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH
Confidence 44566677788999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 038673 171 EYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 171 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 250 (548)
++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.| +..++++|+++|+++|++++|.++|++|.+
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~--~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS--YVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999995 999999999999999999999999999999
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC-----------ccCCCCcCHHHHHHHH
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-----------KCYGVSPSTDHYACMV 319 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----------~~~~~~p~~~~~~~li 319 (548)
+|+++||+||.+|+++|+.++|+.+|++|.. ++.||..||+++|.+|++.|. .+.|+.++..++++|+
T Consensus 453 ~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi 531 (857)
T PLN03077 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531 (857)
T ss_pred CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHH
Confidence 9999999999999999999999999999986 699999999999999999986 6789999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHH
Q 038673 320 DLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFE--LEPDKIGNYIILSNIYASAGMWDDV 397 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a 397 (548)
++|+++|++++|.++|+++ .||..+|+++|.+|.++|+.++|.++|++|.+ ..|+ ..+|..++.+|++.|++++|
T Consensus 532 ~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHH
Confidence 9999999999999999999 79999999999999999999999999999998 4555 45999999999999999999
Q ss_pred HHHHHHHH-hCCCccCCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHhhh
Q 038673 398 SRVRRLLK-MTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRI 476 (548)
Q Consensus 398 ~~~~~~m~-~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~ 476 (548)
.++|+.|. +.|+.|+.......++ .....++.+++. +++++| ++.||...+...+..+...+.
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~---------~l~r~G~~~eA~----~~~~~m---~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVD---------LLGRAGKLTEAY----NFINKM---PITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHH---------HHHhCCCHHHHH----HHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 99999998 7899887643332232 444556677774 445555 588998776655554433222
Q ss_pred hhhhhHHHH-HHHhccCCCCCCcEEEEecccccCCCcchhhhhhhhcCceEEE-------ecCCccccccccccc
Q 038673 477 LMTHSEKLA-LAFGLLTTSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVV-------RDNMRFHHFQDGKCS 543 (548)
Q Consensus 477 ~~~~~e~la-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~~g~~s 543 (548)
+... |..+ ..+.+.|..++..+.+..-+...|+..++.++...|..+.+.- --.+..|-|.-|--|
T Consensus 673 ~e~~-e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 673 VELG-ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred hHHH-HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 2111 1111 2345566656666555556778899999999998887774321 113577888665443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-58 Score=496.66 Aligned_cols=406 Identities=19% Similarity=0.225 Sum_probs=354.0
Q ss_pred CCcchHHHhccCCCCCcch-----HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHH
Q 038673 1 MDSFPRLVFEQVKYKNPFL-----WTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIH 75 (548)
Q Consensus 1 ~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~ 75 (548)
++++|+++|++|+.++... ++.++.+|.+.|..++|+.+|+.|.. ||..+|+.++.+|++.|+++.|.++|
T Consensus 385 ~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf 460 (1060)
T PLN03218 385 RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVL 460 (1060)
T ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3578999999998776554 45566778889999999999988874 89999999999999999999999999
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCC----CCCeehHHHHHHHHHhCCChHHHHHHHccCC----C
Q 038673 76 AQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP----ERDVVSWTELIVAYANNGDMESAGGLFNELP----L 147 (548)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~ 147 (548)
+.|.+.| +.||..+|++||.+|+++|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|. .
T Consensus 461 ~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 461 RLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 9999988 99999999999999999999999999999997 3889999999999999999999999999885 5
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHH
Q 038673 148 KDKVAWTAMVTGYVQNAKPREAIEYFERMQY--AGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVG 225 (548)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 225 (548)
||.++||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.|+.| +..+|
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p--~~~ty 617 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG--TPEVY 617 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--ChHHH
Confidence 7889999999999999999999999999976 5789999999999999999999999999999999999885 88999
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcCC----CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhc
Q 038673 226 SALIDMYSKCGSIDDAYRIFVGMK----QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301 (548)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 301 (548)
++++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|+++|.+|++.
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 999999999999999999999987 4788999999999999999999999999999999999999999999999999
Q ss_pred CC-----------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 038673 302 GL-----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP---VEPNGGVWGALLGACQIHRNPEIAQIAA 367 (548)
Q Consensus 302 ~~-----------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 367 (548)
|. ...|+.||..+|+.||.+|++.|++++|.++|++|. +.||..||++++.+|.+.|+++.|.+++
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 86 557889999999999999999999999999999884 7899999999999999999999999999
Q ss_pred HHHhhcC-CCCchhHHHHHHHHH----HcC-------------------CchHHHHHHHHHHhCCCccCC
Q 038673 368 NHLFELE-PDKIGNYIILSNIYA----SAG-------------------MWDDVSRVRRLLKMTGLKKNP 413 (548)
Q Consensus 368 ~~~~~~~-p~~~~~~~~l~~~~~----~~g-------------------~~~~a~~~~~~m~~~g~~~~~ 413 (548)
++|.+.. .++..+|..|+.+|. +++ ..++|..+|++|.+.|+.|+.
T Consensus 778 ~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 778 SQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 9998832 234557888876643 222 236799999999999998875
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-58 Score=497.77 Aligned_cols=498 Identities=18% Similarity=0.215 Sum_probs=425.9
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHH
Q 038673 14 YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGI-GPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGN 92 (548)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (548)
.+|...|..++..+++.|++++|+++|++|...|+ .|+..+++.++.+|.+.|.+++|..++..| ..||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M-----~~pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI-----RNPTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc-----CCCCHHHHH
Confidence 35777899999999999999999999999999996 468888899999999999999999999877 359999999
Q ss_pred HHHHHHHHcCChHHHHHHHccCCC----CCeehHHHHHHHHHhCCChHHHHHHHccCC----CCChhHHHHHHHHHHHCC
Q 038673 93 TMIGMYVKCGFLGCSRKVFDEMPE----RDVVSWTELIVAYANNGDMESAGGLFNELP----LKDKVAWTAMVTGYVQNA 164 (548)
Q Consensus 93 ~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g 164 (548)
.|+.+|++.|+++.|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|. .||..+|++||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 999999999999999999999975 899999999999999999999999999998 689999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHH--cCCCCCChHhHHHHHHHHHhcCCCHHHHH
Q 038673 165 KPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEG--SGFGPINNVVVGSALIDMYSKCGSIDDAY 242 (548)
Q Consensus 165 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~p~~~~~~~~~li~~y~~~g~~~~A~ 242 (548)
++++|+++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+ .++.| +..+|++|+.+|+++|++++|.
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P--D~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP--DHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67885 9999999999999999999999
Q ss_pred HHHhcCCC----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC-----------ccCC
Q 038673 243 RIFVGMKQ----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-----------KCYG 307 (548)
Q Consensus 243 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----------~~~~ 307 (548)
++|+.|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|. .+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999985 67799999999999999999999999999999999999999999999999996 6789
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCchhHH
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMP---VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE--LEPDKIGNYI 382 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~ 382 (548)
+.|+..+|+.||.+|++.|++++|.++|++|. +.||..+|++||.+|.+.|++++|.+++++|.+ ..| +..+|.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~ 758 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYS 758 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHH
Confidence 99999999999999999999999999999994 789999999999999999999999999999987 345 556999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEccC------------CeEEEEEeCCCCCCC-hHHHHHHHHHHH
Q 038673 383 ILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDR------------GVIHEFRAGDLTHPN-STEIQQALGDLL 449 (548)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~-~~~~~~~l~~l~ 449 (548)
.|+.+|++.|++++|.+++++|.+.|+.|+.......++. ..+..|-.+ ++. ..........++
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---ccccccchHHHHHHHH
Confidence 9999999999999999999999999999886433222210 111122111 111 011112345899
Q ss_pred HHHHHCCcccCCccccccCChHH-HhhhhhhhhHHHHHHHhccCCCCCCcE--EEEecccccCCC-cchhhhhhhhcCce
Q 038673 450 DRLQADGYQPNLRSVLYDVSDEE-KKRILMTHSEKLALAFGLLTTSPGATV--RIMKNLRICEDC-HLFMCGASQVIGRE 525 (548)
Q Consensus 450 ~~m~~~g~~pd~~~~~~~~~~~~-~~~~~~~~~e~la~~~~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~~~~~~~~~~ 525 (548)
++|.+.|+.||..++...+ .|- +.+- ....+.+--.++..+.+++... .+++.+ +.. .+|..++..|..+.
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVL-GCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHH-HHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcC
Confidence 9999999999998887665 222 1111 1223444455777777666442 344543 322 47999999888886
Q ss_pred EE
Q 038673 526 IV 527 (548)
Q Consensus 526 ~~ 527 (548)
|+
T Consensus 911 i~ 912 (1060)
T PLN03218 911 VV 912 (1060)
T ss_pred CC
Confidence 64
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-56 Score=477.00 Aligned_cols=474 Identities=18% Similarity=0.224 Sum_probs=413.4
Q ss_pred CCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----CCeehHHH
Q 038673 49 GPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE----RDVVSWTE 124 (548)
Q Consensus 49 ~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~ 124 (548)
.++..+|+.++.++.+.|++++|.++|+.|.+.+++.||..+|+.++.++++.++++.|.+++..|.+ ||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34667899999999999999999999999998765789999999999999999999999999999974 89999999
Q ss_pred HHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHH
Q 038673 125 LIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYA 204 (548)
Q Consensus 125 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 204 (548)
++.+|++.|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 038673 205 NWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTET 284 (548)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 284 (548)
.++|..+.+.|+.| +..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+
T Consensus 244 ~~l~~~~~~~g~~~--d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 244 QQLHCCVLKTGVVG--DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHhCCCc--cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999995 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHhhcCC-----------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 285 KPNGVTFIGVLTACSHVGL-----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353 (548)
Q Consensus 285 ~p~~~t~~~ll~a~~~~~~-----------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 353 (548)
.||..||++++.+|++.|. .+.|+.||..+|++||++|++.|++++|.++|++|. +||..+|++||.+
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~ 400 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAG 400 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHH
Confidence 9999999999999999986 678899999999999999999999999999999998 7999999999999
Q ss_pred HHhcCCHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh-CCCccCCceeEEEccCCeEEEEEe
Q 038673 354 CQIHRNPEIAQIAANHLFE--LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM-TGLKKNPGYSWLEGDRGVIHEFRA 430 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~~~~~ 430 (548)
|.++|+.++|.++|++|.+ ..| +..+|..++.+|++.|++++|.++|+.|.+ .|+.|+.......+ .
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li---------~ 470 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI---------E 470 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH---------H
Confidence 9999999999999999988 445 455999999999999999999999999976 68887754332222 3
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHhhhhhhhhHHHHHHHhccCCCCCCcEEEEecccccCC
Q 038673 431 GDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRILMTHSEKLALAFGLLTTSPGATVRIMKNLRICED 510 (548)
Q Consensus 431 ~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~l~~~~~ 510 (548)
+....++.+++++ + +++.++.||..++...+..+.+.+.+..-.+.....+++.+...+..+.+.+-+..+|+
T Consensus 471 ~l~r~G~~~eA~~----~---~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 471 LLGREGLLDEAYA----M---IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHhcCCHHHHHH----H---HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 5566777777753 3 34558899988776655555444333211111112245555545566667788999999
Q ss_pred CcchhhhhhhhcCceEEE-------ecCCcccccccccc
Q 038673 511 CHLFMCGASQVIGREIVV-------RDNMRFHHFQDGKC 542 (548)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~~g~~ 542 (548)
..+|.+++..|..+.+-. .-.+..|.|.-|-.
T Consensus 544 ~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 544 QAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 999999999999886532 22345677765543
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=5.5e-31 Score=209.30 Aligned_cols=106 Identities=53% Similarity=0.980 Sum_probs=95.5
Q ss_pred ceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChHHH--------hhhhhhhhHHHH
Q 038673 414 GYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEK--------KRILMTHSEKLA 485 (548)
Q Consensus 414 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~e~la 485 (548)
|+||+++ |.|++|+.+||+. ++..++...||.|++..+.++++++++ ...+..||||||
T Consensus 2 ~~~w~~~-----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV-----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLA 68 (116)
T ss_pred CCCccce-----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHH
Confidence 6789633 9999999999988 455677788999999999998877655 568899999999
Q ss_pred HHHhccCCCCCCcEEEEecc-cccCCCcchhhhhhhhcCceEEEecCCcccccc
Q 038673 486 LAFGLLTTSPGATVRIMKNL-RICEDCHLFMCGASQVIGREIVVRDNMRFHHFQ 538 (548)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 538 (548)
++||++++ +|+||+ |||+|||+++|+||++.||+|+|||++|||||+
T Consensus 69 iafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999998 899999 999999999999999999999999999999996
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=8e-25 Score=244.25 Aligned_cols=397 Identities=14% Similarity=0.072 Sum_probs=313.1
Q ss_pred cchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHH
Q 038673 3 SFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTI 79 (548)
Q Consensus 3 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 79 (548)
++|.++|+.+. +++...|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.++
T Consensus 448 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555544 2355677888888888888888888888877642 2345566667777777888888888888887
Q ss_pred HhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHH
Q 038673 80 LLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAW 153 (548)
Q Consensus 80 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~ 153 (548)
+.. +.+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|..+++.+. ..+...|
T Consensus 527 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 604 (899)
T TIGR02917 527 TID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAW 604 (899)
T ss_pred HhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 765 66777888888888888888888888887754 345567778888888888888888888775 3467788
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHh
Q 038673 154 TAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYS 233 (548)
Q Consensus 154 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~ 233 (548)
..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..+++.+.+..+. +..++..++..+.
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~ 680 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD---NTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHH
Confidence 888888888899999998888887653 345666777888888888999999988888876544 7788888888999
Q ss_pred cCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC-------
Q 038673 234 KCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL------- 303 (548)
Q Consensus 234 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~------- 303 (548)
+.|++++|.++++.+.+ .+...+..+...+...|++++|++.|+++... .|+..++..+..++.+.|.
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999998888864 35567888888889999999999999998884 4666777777788877775
Q ss_pred ---ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 304 ---KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VE-PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 304 ---~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
.-...+.+...+..+...|...|++++|.+.|+++. .. ++..++..+...+...|+ ++|...++++.+..|+++
T Consensus 759 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP 837 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc
Confidence 111234467888899999999999999999999874 33 457788888899999999 789999999999999999
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 379 GNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 379 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
..+..++.+|...|++++|.++++++.+.+.
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999987664
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=1.1e-23 Score=235.22 Aligned_cols=395 Identities=13% Similarity=0.041 Sum_probs=337.8
Q ss_pred CcchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHH
Q 038673 2 DSFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQT 78 (548)
Q Consensus 2 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 78 (548)
+++|.+.|+++. +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+...|+.++|...++.+
T Consensus 481 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 481 LAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456888887653 3456678889999999999999999999998753 346778888999999999999999999999
Q ss_pred HHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhH
Q 038673 79 ILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVA 152 (548)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~ 152 (548)
.+.. +.+...+..++..|.+.|++++|..+++.+.+ .+..+|..+...|.+.|++++|...|+++. +.+...
T Consensus 560 ~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 637 (899)
T TIGR02917 560 AELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637 (899)
T ss_pred HHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 8875 67788889999999999999999999999864 466789999999999999999999998875 346778
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
|..+...|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.++++.+.+.... +...+..+...|
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~ 713 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK---AALGFELEGDLY 713 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---ChHHHHHHHHHH
Confidence 9999999999999999999999998753 445778889999999999999999999999888754 778889999999
Q ss_pred hcCCCHHHHHHHHhcCCC--CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC-------
Q 038673 233 SKCGSIDDAYRIFVGMKQ--RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL------- 303 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~------- 303 (548)
.+.|++++|.+.|+.+.+ |+..++..++..+...|++++|.+.++++.+. .+.+...+..+...+...|.
T Consensus 714 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999998864 55677888899999999999999999999885 34456677777777777775
Q ss_pred ---ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 304 ---KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 304 ---~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
.-...+++..+++.+...+...|+ .+|+..+++.. ..|+ ..++..+...+...|++++|...++++++.+|.++
T Consensus 793 ~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 871 (899)
T TIGR02917 793 YRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA 871 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Confidence 111224577889999999999999 88999998873 4454 66777888889999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 379 GNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 379 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
.++..++.+|.+.|++++|.+++++|.
T Consensus 872 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 872 AIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999999999885
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.2e-19 Score=182.52 Aligned_cols=291 Identities=17% Similarity=0.104 Sum_probs=220.5
Q ss_pred HHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCCCC-------ChhHHHHHHHHHHHCCCh
Q 038673 97 MYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELPLK-------DKVAWTAMVTGYVQNAKP 166 (548)
Q Consensus 97 ~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~ 166 (548)
.+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+... ....+..+...|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34455666666666666654 2 2335555666666666666666666655422 124577788888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCCh---HhHHHHHHHHHhcCCCHHHHHH
Q 038673 167 REAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINN---VVVGSALIDMYSKCGSIDDAYR 243 (548)
Q Consensus 167 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~~~li~~y~~~g~~~~A~~ 243 (548)
++|+.+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+ .. ...+..+...|.+.|++++|.+
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS-LRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 88888888887652 4456778888888888888998988888888766442 11 2345677888889999999999
Q ss_pred HHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHH
Q 038673 244 IFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVD 320 (548)
Q Consensus 244 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~ 320 (548)
.|+++.+ .+...+..+...|...|++++|+++|+++... .|+.. ..+++.++.
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~----------------------~~~~~~l~~ 257 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYL----------------------SEVLPKLME 257 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhH----------------------HHHHHHHHH
Confidence 9998764 24557788888999999999999999999874 23211 245678889
Q ss_pred HHHHcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH---cCCchH
Q 038673 321 LLGRAGCLEEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS---AGMWDD 396 (548)
Q Consensus 321 ~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~ 396 (548)
+|.+.|++++|.+.++++. ..|+...+..+...+.+.|++++|..+++++.+..|++. .+..++..+.. .|+.++
T Consensus 258 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~ 336 (389)
T PRK11788 258 CYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKE 336 (389)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchh
Confidence 9999999999999999874 568877778888999999999999999999999999877 56555655553 569999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 038673 397 VSRVRRLLKMTGLKKNPG 414 (548)
Q Consensus 397 a~~~~~~m~~~g~~~~~~ 414 (548)
+..++++|.+++++++|.
T Consensus 337 a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 337 SLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999999985
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=4.6e-19 Score=171.03 Aligned_cols=356 Identities=15% Similarity=0.142 Sum_probs=306.6
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChh-HHHHHH
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLY-VGNTMI 95 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li 95 (548)
.+|..+...+-..|++++|+.+++.|.+. +| ....|..+..++...|+.+.|.+.|...++. .|+.. +.+.+-
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lg 191 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---Ccchhhhhcchh
Confidence 57888999999999999999999999984 56 5678999999999999999999999999885 45444 445555
Q ss_pred HHHHHcCChHHHHHHHccCCC--CC-eehHHHHHHHHHhCCChHHHHHHHccCCCCC---hhHHHHHHHHHHHCCChhHH
Q 038673 96 GMYVKCGFLGCSRKVFDEMPE--RD-VVSWTELIVAYANNGDMESAGGLFNELPLKD---KVAWTAMVTGYVQNAKPREA 169 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A 169 (548)
...-..|++++|...+.+..+ |. .+.|+.|...+-..|+.-.|+.-|++..+-| ...|-.|...|-..+.+++|
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 666678999999999888665 43 5789999999999999999999999987544 45888999999999999999
Q ss_pred HHHHHHHHHCCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcC
Q 038673 170 IEYFERMQYAGVETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 170 ~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 248 (548)
+..|.+.... .|+ .+.+..+...|-..|.++.|...|++.++..+. -...|+.|.+++-..|++.+|.+.+.+.
T Consensus 272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~---F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN---FPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC---chHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 9999888764 554 556778888889999999999999999887754 7889999999999999999999999987
Q ss_pred CC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHc
Q 038673 249 KQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRA 325 (548)
Q Consensus 249 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~ 325 (548)
.. ....+.+.|...|...|..++|..+|....+ +.|... ...+.|...|-..
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~a-----------------------aa~nNLa~i~kqq 401 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFA-----------------------AAHNNLASIYKQQ 401 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhh-----------------------hhhhhHHHHHHhc
Confidence 74 3456788899999999999999999999887 555532 4578899999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 326 GCLEEALKMVEKM-PVEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 326 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
|++++|+.-+++. .++|+ ...++.+-..|...|+++.|.+.+.+++..+|.-..++..|+.+|-..|+..+|++-++.
T Consensus 402 gnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred ccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence 9999999999887 48898 788999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhCC
Q 038673 404 LKMTG 408 (548)
Q Consensus 404 m~~~g 408 (548)
..+..
T Consensus 482 aLklk 486 (966)
T KOG4626|consen 482 ALKLK 486 (966)
T ss_pred HHccC
Confidence 87533
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.8e-18 Score=181.81 Aligned_cols=355 Identities=13% Similarity=0.017 Sum_probs=267.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMY 98 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 98 (548)
.+......+.+.|++++|+..|++.+. +.|+...|..+..++...|+++.|...++..++.. +.+...+..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 355667788899999999999999887 56888889999999999999999999999999875 66778899999999
Q ss_pred HHcCChHHHHHHHccCCC---------------------------------CCeehHHHHHHHH----------------
Q 038673 99 VKCGFLGCSRKVFDEMPE---------------------------------RDVVSWTELIVAY---------------- 129 (548)
Q Consensus 99 ~~~g~~~~A~~~~~~m~~---------------------------------~~~~~~~~li~~~---------------- 129 (548)
...|++++|...|..... ++..++..+...+
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 999999999765533211 1111111110000
Q ss_pred --------------------HhCCChHHHHHHHccCCC------CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC
Q 038673 130 --------------------ANNGDMESAGGLFNELPL------KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET 183 (548)
Q Consensus 130 --------------------~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 183 (548)
...+++++|.+.|++... .....|+.+...+...|++++|+..|++.... .|
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P 362 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DP 362 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Confidence 112567777777776542 23456777777888888888888888887764 34
Q ss_pred C-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHH
Q 038673 184 D-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSM 259 (548)
Q Consensus 184 ~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 259 (548)
+ ...|..+...+...|++++|...++.+++.... +..++..+...|...|++++|...|++..+ .+...|..+
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE---DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 3 446777777778888888888888888776533 777888888888888888888888887764 345567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 260 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
...+.+.|++++|+..|++.++ ..|+ +...|+.+..++...|++++|.+.|++..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~--~~P~-----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKK--NFPE-----------------------APDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCC-----------------------ChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7788888888888888888776 2343 34568888999999999999999998863
Q ss_pred -CCCCh-hH-------HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 340 -VEPNG-GV-------WGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 340 -~~p~~-~~-------~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+.|+. .+ ++..+..+...|++++|...++++++++|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 495 ~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 495 ELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44431 11 1112223344699999999999999999999889999999999999999999999988653
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1.8e-19 Score=173.81 Aligned_cols=362 Identities=14% Similarity=0.109 Sum_probs=309.7
Q ss_pred CCcchHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHH-HHHHhhccCCcHHHHHHHH
Q 038673 1 MDSFPRLVFEQVKY---KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSA-LFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 1 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~a~~~~~~~~~a~~~~~ 76 (548)
++++|...++.+.+ ..+..|-.+..++...|+.+.|.+.|...++ +.|+.....+ +.......|++++|...+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 46788888876653 4667899999999999999999999999887 5676654433 3333445788999999999
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CC-eehHHHHHHHHHhCCChHHHHHHHccCC---CCCh
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RD-VVSWTELIVAYANNGDMESAGGLFNELP---LKDK 150 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~ 150 (548)
..++.. +--..+|+.|...+-..|++..|..-|++... |+ ...|-.|-..|...+.+++|...+.+.. ....
T Consensus 209 kAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 209 KAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 998864 44466899999999999999999999999876 43 3578889999999999999999987754 3367
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
+.+..|...|-.+|..+-|+..|++.... .|+ ...|+.+..++-..|++.+|.+.|.......+. .....+.|.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~---hadam~NLg 361 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN---HADAMNNLG 361 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc---cHHHHHHHH
Confidence 88999999999999999999999998875 555 457999999999999999999999999988765 888999999
Q ss_pred HHHhcCCCHHHHHHHHhcCCCCC---hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccC
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQRN---VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCY 306 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 306 (548)
+.|...|++++|..+|....+-. ....|.|...|-++|+.++|+..|++.+. ++|+..
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA----------------- 422 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA----------------- 422 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH-----------------
Confidence 99999999999999999887532 35789999999999999999999999987 777743
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHH
Q 038673 307 GVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIIL 384 (548)
Q Consensus 307 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 384 (548)
..|+.+...|-..|+.+.|.+.+.+.- +.|. ....+.|.+.+...|++++|+..++..+++.|+.+.+|-.+
T Consensus 423 ------da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 423 ------DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred ------HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 568889999999999999999998774 7787 77889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchH
Q 038673 385 SNIYASAGMWDD 396 (548)
Q Consensus 385 ~~~~~~~g~~~~ 396 (548)
+.++----+|.+
T Consensus 497 lh~lq~vcdw~D 508 (966)
T KOG4626|consen 497 LHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHhcccc
Confidence 888766666666
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=1.2e-17 Score=188.39 Aligned_cols=395 Identities=12% Similarity=0.015 Sum_probs=275.3
Q ss_pred CcchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh---hhHH------------HHHHHhh
Q 038673 2 DSFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVS---FTLS------------ALFKACT 63 (548)
Q Consensus 2 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~------------~ll~a~~ 63 (548)
+++|...|++.. +.+...+..+...|.+.|++++|+..|++..+.. |+. ..+. .....+.
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 456677776543 2356677888888888888888888888877643 322 1111 1233456
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHH
Q 038673 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGG 140 (548)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~ 140 (548)
..|++++|...++++++.. +.+...+..+..+|...|++++|.+.|++..+ | +...+..+...|. .++.++|..
T Consensus 363 ~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~ 439 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALA 439 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHH
Confidence 7788888888888888864 55667777788888888888888888888764 3 3445555666654 456788888
Q ss_pred HHccCCCCC------------hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHH
Q 038673 141 LFNELPLKD------------KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVC 208 (548)
Q Consensus 141 ~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 208 (548)
+++.+.... ...+..+...+...|++++|+..|++..+.. +-+...+..+...+.+.|++++|...+
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777665321 1234456677888899999999999988753 224556677888889999999999999
Q ss_pred HHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC----h---------hhhHHHHHHHHhcCCHHHHHHH
Q 038673 209 EIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN----V---------FSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 209 ~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~~l 275 (548)
+.+.+..+. +...+..+...+.+.|+.++|...++.+.... . ..+..+...+...|+.++|+.+
T Consensus 519 ~~al~~~P~---~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 519 RRLAQQKPN---DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHcCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 998876543 56666666666777888888888888775321 1 1122345566777888888777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhhcCC---------ccCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-
Q 038673 276 FGDMVKTETKPNGVTFIGVLTACSHVGL---------KCYGVSP-STDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN- 343 (548)
Q Consensus 276 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~- 343 (548)
++. .+++...+..+-..+.+.|. ......| +...+..++..|...|++++|++.++... ..|+
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 761 22333344444445555554 1111223 56788899999999999999999999875 4555
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc------hhHHHHHHHHHHcCCchHHHHHHHHHH-hCCCc
Q 038673 344 GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI------GNYIILSNIYASAGMWDDVSRVRRLLK-MTGLK 410 (548)
Q Consensus 344 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~ 410 (548)
...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|.+.++... ..|+.
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 55566677888899999999999999998776554 256667899999999999999988775 33443
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=7e-18 Score=178.35 Aligned_cols=327 Identities=10% Similarity=-0.000 Sum_probs=267.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYV 99 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 99 (548)
.-.++..+.+.|++++|+.+++...... +-+...+..++.+....|+++.|...++.+++.. |.+...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Confidence 4456777889999999999999998853 2245566667777788999999999999999985 777888999999999
Q ss_pred HcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCC--C-CChhHHHHHHHHHHHCCChhHHHHHH
Q 038673 100 KCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELP--L-KDKVAWTAMVTGYVQNAKPREAIEYF 173 (548)
Q Consensus 100 ~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~l~ 173 (548)
..|++++|...|++..+ | +...|..+...+...|++++|...++.+. . .+...+..+ ..+.+.|++++|...+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999999875 3 56688889999999999999999988763 2 234444444 3488899999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHH----HHHHHhcCC
Q 038673 174 ERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD----AYRIFVGMK 249 (548)
Q Consensus 174 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~ 249 (548)
+.+.+..-.++...+..+..++...|++++|...++.+.+.... +...+..+...|.+.|++++ |...|++..
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~---~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD---GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99877643344455556677888999999999999999987644 88899999999999999986 788998876
Q ss_pred C---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcC
Q 038673 250 Q---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAG 326 (548)
Q Consensus 250 ~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g 326 (548)
+ .+...+..+...+...|++++|+..+++... ..|+. ...+..+..+|.+.|
T Consensus 278 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~-----------------------~~a~~~La~~l~~~G 332 (656)
T PRK15174 278 QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDL-----------------------PYVRAMYARALRQVG 332 (656)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC-----------------------HHHHHHHHHHHHHCC
Confidence 4 3556889999999999999999999999987 45553 334666788999999
Q ss_pred CHHHHHHHHHhCC-CCCChhHHHH-HHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 327 CLEEALKMVEKMP-VEPNGGVWGA-LLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 327 ~~~~A~~~~~~m~-~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
++++|.+.++++. ..|+...+.. +..++...|+.++|...++++++..|++.
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999885 5677544443 45678999999999999999999999864
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.6e-18 Score=172.71 Aligned_cols=280 Identities=13% Similarity=0.118 Sum_probs=213.3
Q ss_pred hhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-CC------eehHHHHHHHHHhCCC
Q 038673 62 CTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-RD------VVSWTELIVAYANNGD 134 (548)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~------~~~~~~li~~~~~~g~ 134 (548)
+...|+++.|...+..+++.. +.+..++..+...|...|++++|..+++.+.. ++ ..++..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 345566666666666666654 44555666666666677777777766666554 11 1345666777777777
Q ss_pred hHHHHHHHccCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCChhHHHHH
Q 038673 135 MESAGGLFNELPL---KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY----VTLVGVISACAQLGVIKYANWV 207 (548)
Q Consensus 135 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~ 207 (548)
+++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+...|++++|...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7777777777753 46678899999999999999999999999876533322 2345666778889999999999
Q ss_pred HHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CC--hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038673 208 CEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RN--VFSYSSMILGFAMHGRAHAAIQLFGDMVKTE 283 (548)
Q Consensus 208 ~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 283 (548)
++++.+.... +...+..+...|.+.|++++|.++|+++.+ |+ ..+++.++.+|...|+.++|...++++.+.
T Consensus 203 ~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 203 LKKALAADPQ---CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHhHCcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999887533 677888899999999999999999999874 33 346788999999999999999999999874
Q ss_pred CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHh---cCC
Q 038673 284 TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPNGGVWGALLGACQI---HRN 359 (548)
Q Consensus 284 ~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~---~~~ 359 (548)
.|+ ...+..++..+.+.|++++|..+++++- ..|+..+++.++..+.. .|+
T Consensus 279 -~p~------------------------~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 279 -YPG------------------------ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGR 333 (389)
T ss_pred -CCC------------------------chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCcc
Confidence 344 2345778889999999999999998764 67999999988877654 558
Q ss_pred HHHHHHHHHHHhh
Q 038673 360 PEIAQIAANHLFE 372 (548)
Q Consensus 360 ~~~a~~~~~~~~~ 372 (548)
.+++..+++++.+
T Consensus 334 ~~~a~~~~~~~~~ 346 (389)
T PRK11788 334 AKESLLLLRDLVG 346 (389)
T ss_pred chhHHHHHHHHHH
Confidence 8888888888776
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=6.6e-17 Score=182.53 Aligned_cols=341 Identities=13% Similarity=0.053 Sum_probs=203.1
Q ss_pred hhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CCe---ehHHH------------
Q 038673 62 CTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RDV---VSWTE------------ 124 (548)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~---~~~~~------------ 124 (548)
+...|++++|...++..++.. +.+..++..|..+|.+.|++++|...|++..+ |+. ..|..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 445677777777777777764 55677777777777777888888777777654 321 11221
Q ss_pred HHHHHHhCCChHHHHHHHccCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-------
Q 038673 125 LIVAYANNGDMESAGGLFNELPL---KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISA------- 194 (548)
Q Consensus 125 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~------- 194 (548)
....+.+.|++++|...|++... .+...+..+...+...|++++|++.|++..+.. +.+...+..+...
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHH
Confidence 12345677777777777776642 345566677777777788888887777776542 1222233222222
Q ss_pred -----------------------------------HHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHH
Q 038673 195 -----------------------------------CAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSID 239 (548)
Q Consensus 195 -----------------------------------~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~ 239 (548)
+...|++++|.+.++++++..+. +..++..+...|.+.|+++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~---~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG---SVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHH
Confidence 22334445555555544444322 4444444555555555555
Q ss_pred HHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh---------HHHHHHHHhhcCC----
Q 038673 240 DAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVT---------FIGVLTACSHVGL---- 303 (548)
Q Consensus 240 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---------~~~ll~a~~~~~~---- 303 (548)
+|...|+++.+ .+...+..+...+...|+.++|+..++.+......++... +......+...|.
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 55555544421 1222233333333444555555554444322111111110 1111222222332
Q ss_pred --ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 304 --KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 304 --~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
.-...+++...+..+...+.+.|++++|++.|++.. ..|+ ...+..+...+...|+.++|++.++.+.+..|+++.
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH
Confidence 000123355566778888888888888888888774 4554 677788888888889999999998888888888888
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 380 NYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
.+..++.++...|++++|.++++.+.+..
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88888888888899999999888887643
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=3.3e-17 Score=173.22 Aligned_cols=326 Identities=10% Similarity=-0.011 Sum_probs=269.4
Q ss_pred hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-CeehHHHHHHH
Q 038673 52 SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVA 128 (548)
Q Consensus 52 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~ 128 (548)
..-...++..+.+.|+++.|..+++..+... +.+......++......|++++|...|+++.+ | +...|..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3445667788889999999999999999875 56666777777788889999999999999875 3 45678888999
Q ss_pred HHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHH
Q 038673 129 YANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYAN 205 (548)
Q Consensus 129 ~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 205 (548)
+.+.|++++|...|++.. ..+...|..+...+...|++++|...++.+...... +...+.. +..+...|++++|.
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~-~~~l~~~g~~~eA~ 197 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIAT-CLSFLNKSRLPEDH 197 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHcCCHHHHH
Confidence 999999999999999876 336778999999999999999999999988765322 2223333 33478889999999
Q ss_pred HHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHH----HHHHHHH
Q 038673 206 WVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHA----AIQLFGD 278 (548)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~ 278 (548)
..++.+.+.... .+......+...+.+.|++++|...|+++.+ .+...+..+...|...|++++ |+..|++
T Consensus 198 ~~~~~~l~~~~~--~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 198 DLARALLPFFAL--ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHhcCCC--cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999998877543 2455556677889999999999999998774 356778889999999999986 8999999
Q ss_pred HHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHh
Q 038673 279 MVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQI 356 (548)
Q Consensus 279 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~ 356 (548)
..+ +.|+ +...+..+...+.+.|++++|...+++.. ..|+ ...+..+..++..
T Consensus 276 Al~--l~P~-----------------------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 276 ALQ--FNSD-----------------------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ 330 (656)
T ss_pred HHh--hCCC-----------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 987 4565 34568888999999999999999999874 5566 5567777789999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 357 HRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 357 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
.|++++|...++++.+..|+++..+..++.++...|++++|...+++..+..
T Consensus 331 ~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 331 VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988777778889999999999999999887653
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=6.5e-17 Score=174.63 Aligned_cols=384 Identities=12% Similarity=0.048 Sum_probs=277.2
Q ss_pred CcchHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHH
Q 038673 2 DSFPRLVFEQVKY---KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQ 77 (548)
Q Consensus 2 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~ 77 (548)
.++|.+++.+..+ .+...+..+...+.+.|++++|.++|++..+. .| +...+..+...+...|++++|...++.
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4567777766543 23345888888888889999999999888774 34 455666777778888889999998888
Q ss_pred HHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCCCCChh---
Q 038673 78 TILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELPLKDKV--- 151 (548)
Q Consensus 78 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~--- 151 (548)
+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|..++|++.++.... ++.
T Consensus 109 ~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~ 184 (765)
T PRK10049 109 LVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKR 184 (765)
T ss_pred HHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHH
Confidence 88874 66666 88888888888999999988888765 3 444566677778888888888888887765 211
Q ss_pred -----HHHHHHHHHH-----HCCCh---hHHHHHHHHHHHC-CCCCCHh-hHH----HHHHHHHccCChhHHHHHHHHHH
Q 038673 152 -----AWTAMVTGYV-----QNAKP---REAIEYFERMQYA-GVETDYV-TLV----GVISACAQLGVIKYANWVCEIAE 212 (548)
Q Consensus 152 -----~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~p~~~-t~~----~ll~~~~~~g~~~~a~~~~~~~~ 212 (548)
....++..+. ..+++ ++|+..++.+.+. ...|+.. .+. ..+.++...|+.++|...|+.+.
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 1222222222 12233 6788888888753 2233321 111 11334566788999999999988
Q ss_pred HcCCC-CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC-------hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 038673 213 GSGFG-PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN-------VFSYSSMILGFAMHGRAHAAIQLFGDMVKTET 284 (548)
Q Consensus 213 ~~~~~-p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 284 (548)
+.+.. | .... ..+...|...|++++|...|+++.+.+ ...+..+..++...|++++|..+++++...
T Consensus 265 ~~~~~~P-~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~-- 339 (765)
T PRK10049 265 AEGQIIP-PWAQ--RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN-- 339 (765)
T ss_pred ccCCCCC-HHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--
Confidence 87643 2 2222 335778999999999999999876422 123555666788899999999999998873
Q ss_pred CCCHhhHHHHHHHHhhcCCccCCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCC
Q 038673 285 KPNGVTFIGVLTACSHVGLKCYGVSPS---TDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRN 359 (548)
Q Consensus 285 ~p~~~t~~~ll~a~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~ 359 (548)
.|.......+ ..-.|+ ...+..+..++...|++++|+++++++. ..|+ ...+..+...+...|+
T Consensus 340 ~P~~~~~~~~-----------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 340 SPPFLRLYGS-----------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred CCceEeecCC-----------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 3332110000 011233 2345677888999999999999999974 4455 6778888899999999
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 360 PEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 360 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
++.|++.++++++++|+++..+..++..+.+.|+|++|..+++.+.+.
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999764
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=2.7e-15 Score=159.11 Aligned_cols=352 Identities=11% Similarity=0.006 Sum_probs=269.0
Q ss_pred CcchHHHhccCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHHH
Q 038673 2 DSFPRLVFEQVK--YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQT 78 (548)
Q Consensus 2 ~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 78 (548)
++.|.+.|++.- .|+...|..+..+|.+.|++++|++.++..++. .| +...|..+..++...|++++|..-+..+
T Consensus 143 ~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 143 FNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567888887644 467788999999999999999999999999874 45 5568888999999999999997665444
Q ss_pred HHhCCC----------------------------CCChhHHHHH------------------------------HHHH--
Q 038673 79 ILLGGF----------------------------TSDLYVGNTM------------------------------IGMY-- 98 (548)
Q Consensus 79 ~~~~~~----------------------------~~~~~~~~~l------------------------------i~~~-- 98 (548)
...+++ +++...+..+ +..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (615)
T TIGR00990 221 CIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLK 300 (615)
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHH
Confidence 322101 1111111100 1111
Q ss_pred ----HHcCChHHHHHHHccCCCC------CeehHHHHHHHHHhCCChHHHHHHHccCCC--C-ChhHHHHHHHHHHHCCC
Q 038673 99 ----VKCGFLGCSRKVFDEMPER------DVVSWTELIVAYANNGDMESAGGLFNELPL--K-DKVAWTAMVTGYVQNAK 165 (548)
Q Consensus 99 ----~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~ 165 (548)
...+++++|.+.|+...+. +...|+.+...+...|++++|...|++... | +..+|..+...+...|+
T Consensus 301 ~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 301 SPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD 380 (615)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC
Confidence 1125788899999877642 345688888889999999999999998753 3 46688899999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHH
Q 038673 166 PREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF 245 (548)
Q Consensus 166 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~ 245 (548)
+++|+..|++..+.. +.+...+..+...+...|++++|...++..++..+. +...+..+...|.+.|++++|...|
T Consensus 381 ~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~---~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 381 PDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD---FIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc---CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998763 345678888889999999999999999999988754 7888999999999999999999999
Q ss_pred hcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhhcCCccCCCCcCHHHHHHHHHH
Q 038673 246 VGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGV-TFIGVLTACSHVGLKCYGVSPSTDHYACMVDL 321 (548)
Q Consensus 246 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~ 321 (548)
++..+ .+...|+.+...+...|++++|++.|++.... .|+.. ++..+ ...++.....
T Consensus 457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~-----------------~~l~~~a~~~ 517 (615)
T TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNV-----------------LPLINKALAL 517 (615)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccH-----------------HHHHHHHHHH
Confidence 98764 45678999999999999999999999999873 34321 11000 0112223334
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 322 LGRAGCLEEALKMVEKM-PVEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 322 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
+...|++++|.+++++. ...|+ ...+..+...+...|++++|...++++.++.+...
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 45579999999999885 45566 45688888999999999999999999999877543
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=1.2e-14 Score=157.05 Aligned_cols=347 Identities=10% Similarity=-0.015 Sum_probs=262.5
Q ss_pred CcchHHHhcc---CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHH
Q 038673 2 DSFPRLVFEQ---VKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQ 77 (548)
Q Consensus 2 ~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~ 77 (548)
+++|.++|++ ..+.+...+..+...+...|++++|+..+++..+. .| +.. +..+..++...|+.+.|...++.
T Consensus 65 ~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 65 WQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 4678888887 44556677888999999999999999999999885 44 455 88888889999999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-CCe------ehHHHHHHHHH-----hCCCh---HHHHHHH
Q 038673 78 TILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-RDV------VSWTELIVAYA-----NNGDM---ESAGGLF 142 (548)
Q Consensus 78 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~------~~~~~li~~~~-----~~g~~---~~A~~~f 142 (548)
+++.. +.+...+..+..++...|..+.|.+.++.... |+. .....++.... ..+++ ++|++.+
T Consensus 142 al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 142 ALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 99985 66777888889999999999999999998776 221 01122222222 22234 6677777
Q ss_pred ccCCC---CChh---H----HHHHHHHHHHCCChhHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHccCChhHHHHHHHHH
Q 038673 143 NELPL---KDKV---A----WTAMVTGYVQNAKPREAIEYFERMQYAGVE-TDYVTLVGVISACAQLGVIKYANWVCEIA 211 (548)
Q Consensus 143 ~~m~~---~~~~---~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 211 (548)
+.+.. .++. . ....+..+...|++++|+..|+++.+.+-+ |+. ....+..++...|++++|...++.+
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 76652 1211 1 112234556789999999999999887632 332 2223567889999999999999998
Q ss_pred HHcCCCC-CChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC------------------hhhhHHHHHHHHhcCCHHHH
Q 038673 212 EGSGFGP-INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN------------------VFSYSSMILGFAMHGRAHAA 272 (548)
Q Consensus 212 ~~~~~~p-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------------------~~~~~~li~~~~~~g~~~~A 272 (548)
.+..... .........|..++.+.|++++|.++++.+.+.+ ...+..+...+...|+.++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 8755321 0123556777778999999999999999887422 12345667788899999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHH
Q 038673 273 IQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGAL 350 (548)
Q Consensus 273 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~l 350 (548)
+++++++.. ..|+. ...+..+...+...|++++|++.+++.. ..|+ ...+..+
T Consensus 379 ~~~l~~al~--~~P~n-----------------------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 379 EMRARELAY--NAPGN-----------------------QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred HHHHHHHHH--hCCCC-----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 999999987 35553 4567888899999999999999999885 6687 5556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 351 LGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 351 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
...+...|++++|+.+++.+++..|+++.
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 67888999999999999999999999984
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=3.8e-14 Score=153.68 Aligned_cols=372 Identities=12% Similarity=0.046 Sum_probs=254.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhc-cCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 038673 23 LIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTE-VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC 101 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 101 (548)
+...|.+.|++++|++++.++.+.+. .+..-...+-.++.. .++ +.+..++.. . ...|+.++..++..|.+.
T Consensus 188 ~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~-lk~d~~l~~ala~~yi~~ 260 (987)
T PRK09782 188 LLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----G-IFTDPQSRITYATALAYR 260 (987)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----h-cccCHHHHHHHHHHHHHC
Confidence 37788888888888888888888642 234445555566665 355 666666332 2 456788888899999999
Q ss_pred CChHHHHHHHccCCC-----CCeehHH------------------------------HHHHHHHhCCChHHHHHH-----
Q 038673 102 GFLGCSRKVFDEMPE-----RDVVSWT------------------------------ELIVAYANNGDMESAGGL----- 141 (548)
Q Consensus 102 g~~~~A~~~~~~m~~-----~~~~~~~------------------------------~li~~~~~~g~~~~A~~~----- 141 (548)
|+.++|.+++.+++. |...+|. .++..+.+.++++.++++
T Consensus 261 G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (987)
T PRK09782 261 GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLP 340 (987)
T ss_pred CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 999999998888863 2222221 113344455555544444
Q ss_pred ----------------------------------------------------------HccCCC--C----ChhHHHHHH
Q 038673 142 ----------------------------------------------------------FNELPL--K----DKVAWTAMV 157 (548)
Q Consensus 142 ----------------------------------------------------------f~~m~~--~----~~~~~~~li 157 (548)
|..... + +...-+-++
T Consensus 341 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 341 ANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred cchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 222211 1 122233455
Q ss_pred HHHHHCCC---hhHHHHH----------------------HHHHHH-CCC-CC--CHhhHHHHHHHHHccCChhHHHHHH
Q 038673 158 TGYVQNAK---PREAIEY----------------------FERMQY-AGV-ET--DYVTLVGVISACAQLGVIKYANWVC 208 (548)
Q Consensus 158 ~~~~~~g~---~~~A~~l----------------------~~~m~~-~g~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~ 208 (548)
..|.+.+. ..+++.+ +..... .+. ++ +...+..+..++.. +..++|...+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 55555544 2233222 111111 122 33 45566666666665 7888899988
Q ss_pred HHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 038673 209 EIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKP 286 (548)
Q Consensus 209 ~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 286 (548)
....... | +......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+. .|
T Consensus 500 ~~Al~~~--P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P 573 (987)
T PRK09782 500 LQAEQRQ--P--DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GL 573 (987)
T ss_pred HHHHHhC--C--chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 8777665 3 223344455666789999999999987764 44556777778889999999999999999885 35
Q ss_pred CHhhHH-HHHHHHhhcCC---------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHH
Q 038673 287 NGVTFI-GVLTACSHVGL---------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGAC 354 (548)
Q Consensus 287 ~~~t~~-~ll~a~~~~~~---------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~ 354 (548)
+..... .+.......|. ......|+...|..+..++.+.|++++|...+++.. ..|+ ...+..+-.++
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 543322 22233333343 334456788899999999999999999999999874 6676 56666777889
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
...|+.++|...++++++..|+++..+..++.+|...|++++|...+++..+..
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999987543
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=4.6e-14 Score=150.02 Aligned_cols=385 Identities=12% Similarity=0.055 Sum_probs=232.2
Q ss_pred cchHHHhccCCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh-hH--HHHHHHhhccCCcHHHHHHHH
Q 038673 3 SFPRLVFEQVKYKNPF---LWTALIRGYILQGHLKDSISLYCSMRREGIGPVSF-TL--SALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 3 ~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~--~~ll~a~~~~~~~~~a~~~~~ 76 (548)
+.|+..|++..+.++. .-..++..+...|+.++|+..+++.. .|+.. .+ ..+...+...|+++.|.++++
T Consensus 51 ~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 51 APVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred HHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566666655532222 12266666667777777777777666 23222 22 222345566677777777777
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CCeehHHHHHHHHHhCCChHHHHHHHccCCC--C-Chh
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RDVVSWTELIVAYANNGDMESAGGLFNELPL--K-DKV 151 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~ 151 (548)
.+++.. +.|..++..++..|...++.++|++.++++.. |+...+..++..+...++..+|++.++++.+ | +..
T Consensus 127 kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 127 SSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred HHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence 777764 55566666666777777777777777777665 3333332333333334444446666666541 2 333
Q ss_pred HHHHHHHHHHHCCChhHHHHH------------------------------------------------HHHHHH-CCCC
Q 038673 152 AWTAMVTGYVQNAKPREAIEY------------------------------------------------FERMQY-AGVE 182 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l------------------------------------------------~~~m~~-~g~~ 182 (548)
.+..+..+..+.|-...|+++ ++.+.. .+-.
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~ 284 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKD 284 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCC
Confidence 334444444443333333322 222221 1111
Q ss_pred CCHh-h----HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC------
Q 038673 183 TDYV-T----LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR------ 251 (548)
Q Consensus 183 p~~~-t----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------ 251 (548)
|... - ..-.+-++...++..++.+.++.+...+.+ ....+-.++.++|...+.+++|..+|..+...
T Consensus 285 p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~--~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~ 362 (822)
T PRK14574 285 PEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK--MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR 362 (822)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC--CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence 2111 1 112334455566666677777666666544 34556666777777777777777777665431
Q ss_pred ---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhhcCCccCCCCcCH-HHHHHHHHHHHHcC
Q 038673 252 ---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVT-FIGVLTACSHVGLKCYGVSPST-DHYACMVDLLGRAG 326 (548)
Q Consensus 252 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~~p~~-~~~~~li~~~~~~g 326 (548)
+......|.-+|...+++++|..+++++.+. .|..+. | |.......||- ..+..++..+...|
T Consensus 363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~----------~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVY----------GLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEecc----------CCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 1122345666666777777777777777652 221000 0 00001112222 34455678889999
Q ss_pred CHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 038673 327 CLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLL 404 (548)
Q Consensus 327 ~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 404 (548)
++.+|++.++++. ..| |...+..+-..+...|.+..|++.++.+..++|++..+...++..+...|+|++|..+.+..
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999985 345 57778888899999999999999999999999999999999999999999999999998777
Q ss_pred HhC
Q 038673 405 KMT 407 (548)
Q Consensus 405 ~~~ 407 (548)
.+.
T Consensus 511 ~~~ 513 (822)
T PRK14574 511 ISR 513 (822)
T ss_pred Hhh
Confidence 654
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1e-13 Score=129.01 Aligned_cols=368 Identities=14% Similarity=0.135 Sum_probs=232.7
Q ss_pred hHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCC
Q 038673 5 PRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGF 84 (548)
Q Consensus 5 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 84 (548)
|.-+|+.. +++..++.+||.++++--..+.|.+++++-.....+.+..+||.+|.+.+-. .++++..+|++.. +
T Consensus 196 AdL~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqk-m 269 (625)
T KOG4422|consen 196 ADLLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQK-M 269 (625)
T ss_pred HHHHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhh-c
Confidence 44444444 4566789999999999999999999999999888889999999999886543 3488899999998 9
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCC----CCChhHHHHHHHHH
Q 038673 85 TSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELP----LKDKVAWTAMVTGY 160 (548)
Q Consensus 85 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~ 160 (548)
.||.+|+|+++++.++.|+++.|++.+- +++.+|. +|...+|..+|..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aal---------------------------qil~EmKeiGVePsLsSyh~iik~f 322 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAAL---------------------------QILGEMKEIGVEPSLSSYHLIIKNF 322 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHH---------------------------HHHHHHHHhCCCcchhhHHHHHHHh
Confidence 9999999999999999999988776532 2233332 45555666666666
Q ss_pred HHCCChhH-HHHHHHHHHH----CCCCC----CHhhHHHHHHHHHccCChhHHHHHHHHHHHcC----CCC-CChHhHHH
Q 038673 161 VQNAKPRE-AIEYFERMQY----AGVET----DYVTLVGVISACAQLGVIKYANWVCEIAEGSG----FGP-INNVVVGS 226 (548)
Q Consensus 161 ~~~g~~~~-A~~l~~~m~~----~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~~~~~~~ 226 (548)
.+.++..+ |..++.+... ..++| |...|.+.++.|.+..+.+.|.+++....... +.| .....-|.
T Consensus 323 ~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr 402 (625)
T KOG4422|consen 323 KRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYR 402 (625)
T ss_pred cccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHH
Confidence 66555533 3333333332 22222 44567788888889999999999888765321 111 01234566
Q ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcC
Q 038673 227 ALIDMYSKCGSIDDAYRIFVGMKQ----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302 (548)
Q Consensus 227 ~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 302 (548)
.+....+....++.-...++.|.. |+..+..-++.+....|.++-.-++|.+|+..|..-+...-..++.-.++..
T Consensus 403 ~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 403 KFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 677888888888888888888874 5666677777788888888888888888888765444444333443333322
Q ss_pred CccCCCCcCHHHHHHHHHHHHHcCCHHHHH-HHHHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh---cCCCC
Q 038673 303 LKCYGVSPSTDHYACMVDLLGRAGCLEEAL-KMVEKMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE---LEPDK 377 (548)
Q Consensus 303 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~p~~ 377 (548)
. +-..|...-+.....-++ -++.++. ..-.+|. ..-.....+.....+.+.|..++|-+++..+.+ .-|..
T Consensus 483 ~--hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~ 558 (625)
T KOG4422|consen 483 L--HPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRS 558 (625)
T ss_pred C--CCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCC
Confidence 1 001121112221111110 0111111 1112221 223344555555666777777777777777754 22333
Q ss_pred chhHH---HHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 378 IGNYI---ILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 378 ~~~~~---~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
+ ..+ -+.+.-........|..+++.|...+..
T Consensus 559 p-~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 559 P-LLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred c-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 3 333 3334444556677777777777766664
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.64 E-value=8.8e-13 Score=143.20 Aligned_cols=347 Identities=11% Similarity=0.032 Sum_probs=247.4
Q ss_pred CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHh-CCCCCChhHHHHHHHHHHHcCChH---H
Q 038673 31 GHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILL-GGFTSDLYVGNTMIGMYVKCGFLG---C 106 (548)
Q Consensus 31 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~---~ 106 (548)
+...++...+..|.+.. +-+....-.+--.....|+.++|.+++.+.... +.-..+....+-|+..|.+.+.+. +
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 55666666666666531 114444444444456778888888888887662 212234556667888888877633 3
Q ss_pred HHHH------------HccC-------------CC---C--CeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHH
Q 038673 107 SRKV------------FDEM-------------PE---R--DVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAM 156 (548)
Q Consensus 107 A~~~------------~~~m-------------~~---~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l 156 (548)
+..+ .... .. + +...|..+..++.. ++.++|...|.+.....+..++.+
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L 513 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHR 513 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHH
Confidence 3222 1111 10 1 34456666666665 788888886666543222234444
Q ss_pred --HHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 157 --VTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 157 --i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
...+.+.|++++|...|+++... +|+...+..+..++...|+.+.|...++...+..+. ....+..+.....+
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~---~~~l~~~La~~l~~ 588 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG---DNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHh
Confidence 33445788999999888887543 444455566667778888888899888888876633 44555555555556
Q ss_pred CCCHHHHHHHHhcCCC--CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCH
Q 038673 235 CGSIDDAYRIFVGMKQ--RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPST 312 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~ 312 (548)
.|++++|...|++..+ |+...|..+...+.+.|+.++|+..|++... ..|+. .
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~-----------------------~ 643 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNN-----------------------S 643 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC-----------------------H
Confidence 6889999888888774 6677788888888888999999999988887 45653 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
..++.+...+...|++++|++.+++.. ..|+ ...+..+-.++...|+++.|+..+++++++.|++..+.........+
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ 723 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence 567888889999999999999999874 5665 77888888999999999999999999999999999899999999999
Q ss_pred cCCchHHHHHHHHHHhCCC
Q 038673 391 AGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 391 ~g~~~~a~~~~~~m~~~g~ 409 (548)
..+++.|.+-+++...-.+
T Consensus 724 ~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 724 RFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHhhcCc
Confidence 9999999998887665444
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=2.6e-12 Score=136.78 Aligned_cols=347 Identities=12% Similarity=0.049 Sum_probs=264.9
Q ss_pred CcchHHHhccCCCCCcchHHHHH---HHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHH
Q 038673 2 DSFPRLVFEQVKYKNPFLWTALI---RGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQ 77 (548)
Q Consensus 2 ~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~ 77 (548)
.++|+..+++...|+...+..+. ..|...|++++|+++|+++.+. .| |...+..++..+...++.++|.+.++.
T Consensus 84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATE 161 (822)
T ss_pred cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 46788888877766544444333 4677789999999999999985 34 456677777888899999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCC--------
Q 038673 78 TILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELP-------- 146 (548)
Q Consensus 78 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------- 146 (548)
+.+. .|+...+..++..+...++..+|.+.++++.+ | +...+..+..++.+.|-...|.++..+-+
T Consensus 162 l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~ 238 (822)
T PRK14574 162 LAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHY 238 (822)
T ss_pred hccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHH
Confidence 8775 45555555555555556667669999998875 4 44556667777777777777766633211
Q ss_pred ----------------------------------------C-----CC-----hhHHHHHHHHHHHCCChhHHHHHHHHH
Q 038673 147 ----------------------------------------L-----KD-----KVAWTAMVTGYVQNAKPREAIEYFERM 176 (548)
Q Consensus 147 ----------------------------------------~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m 176 (548)
. |. ....--.+.++...|++.++++.|+.|
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 0 11 011223455778889999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCC----CCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC
Q 038673 177 QYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGF----GPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN 252 (548)
Q Consensus 177 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 252 (548)
...|.+....+-..+.++|...+.+++|..++..+..... .| .+......|.-+|...+++++|..+++.+.+..
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~-~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNS-DDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCC-cchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 9988765666888999999999999999999999977542 12 355556889999999999999999999987521
Q ss_pred h------------------hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHH
Q 038673 253 V------------------FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDH 314 (548)
Q Consensus 253 ~------------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~ 314 (548)
+ ..+..++..+...|+..+|++.++++.. ..|. |...
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~-----------------------n~~l 452 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPA-----------------------NQNL 452 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC-----------------------CHHH
Confidence 1 1234567778899999999999999987 3444 5567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
...+.+.+...|.+.+|++.++... +.|+ ..+......+....+++++|..+.+.+.+..|+++.
T Consensus 453 ~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 453 RIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 8889999999999999999997765 5676 555666778888899999999999999999999984
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=6e-12 Score=118.10 Aligned_cols=191 Identities=15% Similarity=0.140 Sum_probs=150.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC---CCChhhhHHHHHHHHhcCCHHHHHH
Q 038673 198 LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK---QRNVFSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 198 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 274 (548)
.|++++|.+.|++.+...-. .+.....+.-.+-+.|++++|+..|-++. ..++...-.+.+.|-...+..+|++
T Consensus 503 ngd~dka~~~ykeal~ndas---c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDAS---CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred cCcHHHHHHHHHHHHcCchH---HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 46888888888888776544 33333344556778899999999887764 4566677777788888889999999
Q ss_pred HHHHHHHcCCCCC-HhhHHHHHHHHhhcCC---------ccCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC
Q 038673 275 LFGDMVKTETKPN-GVTFIGVLTACSHVGL---------KCYG-VSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP 342 (548)
Q Consensus 275 l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~---------~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p 342 (548)
++.+... +.|+ ...+..|-..|-+.|. ..+. ++-+.++...|..-|....-+++|..+|++.. ++|
T Consensus 580 ~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 580 LLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 9877665 5555 4555566667777776 2333 34478888899999999999999999999986 789
Q ss_pred ChhHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 038673 343 NGGVWGALL-GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGM 393 (548)
Q Consensus 343 ~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 393 (548)
+..-|..++ +++++.|+++.|..+++...+..|.+......|++++...|.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999 566789999999999999999999999999999999888875
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=7e-11 Score=120.32 Aligned_cols=308 Identities=14% Similarity=0.173 Sum_probs=235.3
Q ss_pred CCcchHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHH
Q 038673 1 MDSFPRLVFEQVKY---KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 1 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~ 76 (548)
++++|.+++.++-. .+...|.+|...|-+.|+.++++..+-..-. ..| |..-|..+..-..+.|+++.|.-+|.
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35778888877663 4667899999999999999999987754443 344 67788899888999999999999999
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCe-e-------hHHHHHHHHHhCCChHHHHHHHccCCC-
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDV-V-------SWTELIVAYANNGDMESAGGLFNELPL- 147 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~-------~~~~li~~~~~~g~~~~A~~~f~~m~~- 147 (548)
.+++.. +++....-.-+.+|-+.|+...|...|.++.+.++ + .--.+++.|...++-+.|.+.++....
T Consensus 232 rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 999986 77877777788899999999999999988876322 1 222356677788888999998887664
Q ss_pred -C---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC---------------------------CCCHhhHHHHHHHHH
Q 038673 148 -K---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV---------------------------ETDYVTLVGVISACA 196 (548)
Q Consensus 148 -~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------------------------~p~~~t~~~ll~~~~ 196 (548)
. +...++.++..|.+...++.|......+..... .++... .-+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 2 455789999999999999999999988876211 222222 12333445
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC----CChhhhHHHHHHHHhcCCHHHH
Q 038673 197 QLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ----RNVFSYSSMILGFAMHGRAHAA 272 (548)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A 272 (548)
+....+....+.....+....|..+...|.-+.++|...|++.+|..+|..+.. .+...|--+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 666777777777778877765556889999999999999999999999999874 4667899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 273 IQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 273 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
.+.|+..+. ..|+.. ..--.|...+.+.|+.++|.+.++.+
T Consensus 469 ~e~y~kvl~--~~p~~~-----------------------D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 469 IEFYEKVLI--LAPDNL-----------------------DARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHh--cCCCch-----------------------hhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 999999988 566643 22333444555555555555555554
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=3.5e-11 Score=112.38 Aligned_cols=318 Identities=16% Similarity=0.150 Sum_probs=203.7
Q ss_pred hhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHH--HHHcCChH-HHHHHHccCCC---CCeehHHHHH
Q 038673 53 FTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGM--YVKCGFLG-CSRKVFDEMPE---RDVVSWTELI 126 (548)
Q Consensus 53 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~-~A~~~~~~m~~---~~~~~~~~li 126 (548)
++=+.|++. ...|.+..+.-+++.|.+.| .+.+..+-..|... |.....+. .-++.|-.|.. .+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 345566654 45678888888999998888 77777776666654 33333322 22345555553 456666
Q ss_pred HHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHH
Q 038673 127 VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANW 206 (548)
Q Consensus 127 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 206 (548)
+.|++.+ ++-+...++..++.+||.+.++--..+.|.++|++-.....+.+..+|+.+|.+.+-. .+++
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK 259 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence 4555544 5555666778899999999999999999999999998888899999999999876533 3488
Q ss_pred HHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHH----hcCC----CCChhhhHHHHHHHHhcCCHHH-HHHHHH
Q 038673 207 VCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIF----VGMK----QRNVFSYSSMILGFAMHGRAHA-AIQLFG 277 (548)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~ 277 (548)
+..+|......| |..++|+++.+.++.|+++.|.+.+ .+|+ +|...+|.-+|.-+.+.++..+ |..+..
T Consensus 260 Lv~EMisqkm~P--nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 260 LVAEMISQKMTP--NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHhhcCC--chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 999999999996 9999999999999999988776543 2332 3555566666655555555432 222333
Q ss_pred HHHH----cCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCC---
Q 038673 278 DMVK----TETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-------VEPN--- 343 (548)
Q Consensus 278 ~m~~----~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~--- 343 (548)
++.. +.++|-..| +..-+..-++.+.+..+.+-|.++..-.. +.|+
T Consensus 338 dI~N~ltGK~fkp~~p~--------------------d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~ 397 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPT--------------------DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHR 397 (625)
T ss_pred HHHHhhccCcccCCCCc--------------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHH
Confidence 3222 112211111 23334455555556666666665544331 2233
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 344 GGVWGALLGACQIHRNPEIAQIAANHLFE-LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 344 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
...|..+..+.++....+.-...++.+.- +--.++.+...+.++..-.|.|+-.-+++..++..|.
T Consensus 398 ~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 398 NFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 23344555555555556666666665554 2222344666677777777777777777777776663
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=3.9e-14 Score=135.12 Aligned_cols=249 Identities=18% Similarity=0.195 Sum_probs=106.0
Q ss_pred HHHHHhCCChHHHHHHHccC-----CCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 038673 126 IVAYANNGDMESAGGLFNEL-----PLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGV 200 (548)
Q Consensus 126 i~~~~~~g~~~~A~~~f~~m-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 200 (548)
...+.+.|++++|++++++. +..|...|..+.......+++++|...++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 33444455555555555321 1224455555556666677777777777777665422 33445555555 56777
Q ss_pred hhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCChhhhHHHHHHHHhcCCHHHHHHH
Q 038673 201 IKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK-----QRNVFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l 275 (548)
+++|.++.....+.. .+...+..++..|.+.|+++++..+++.+. ..+...|..+...+.+.|+.++|+..
T Consensus 93 ~~~A~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 93 PEEALKLAEKAYERD----GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccc----cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777776654433 245556667777788888888888877743 24667788888888899999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHH
Q 038673 276 FGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGA 353 (548)
Q Consensus 276 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~ 353 (548)
+++..+ ..|+ |....+.++..+...|+.+++.++++... ...|+..|..+..+
T Consensus 169 ~~~al~--~~P~-----------------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 169 YRKALE--LDPD-----------------------DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp HHHHHH--H-TT------------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred HHHHHH--cCCC-----------------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999888 4455 34457778888888999998777777663 24567788899999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+...|+.+.|...+++..+..|+++.....++.++...|+.++|.+++++..
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999987653
No 31
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2.6e-11 Score=115.19 Aligned_cols=351 Identities=15% Similarity=0.056 Sum_probs=231.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCC-hhHHHHHHHH
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRREGIGPV-SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSD-LYVGNTMIGM 97 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~ 97 (548)
+-..-.-|.++|.+++|++.|.+.++ ..|| +.-|.....+|...|+|+.+.+--...++. .|+ +..+..-.++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl---~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL---NPDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---CcHHHHHHHHHHHH
Confidence 44455667789999999999999998 5788 566777777788999999888777776663 344 3455555666
Q ss_pred HHHcCChHHHHH------HHccCC-------------------------C--CCeehHHHHHHHHHhC------------
Q 038673 98 YVKCGFLGCSRK------VFDEMP-------------------------E--RDVVSWTELIVAYANN------------ 132 (548)
Q Consensus 98 ~~~~g~~~~A~~------~~~~m~-------------------------~--~~~~~~~~li~~~~~~------------ 132 (548)
+-..|++++|.. +++... + +-+..-.+.|..|...
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 666676665532 111111 0 1111112222222111
Q ss_pred C--------------------ChHHHHHHHccC-------CCCC---------hhHHHHHHHHHHHCCChhHHHHHHHHH
Q 038673 133 G--------------------DMESAGGLFNEL-------PLKD---------KVAWTAMVTGYVQNAKPREAIEYFERM 176 (548)
Q Consensus 133 g--------------------~~~~A~~~f~~m-------~~~~---------~~~~~~li~~~~~~g~~~~A~~l~~~m 176 (548)
+ .+..|.+.+.+- ...+ ..+...-...+.-.|+.-.|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 0 111111111110 0001 111111122234457777777777777
Q ss_pred HHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC---Ch
Q 038673 177 QYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR---NV 253 (548)
Q Consensus 177 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~ 253 (548)
....-.++. .|.-+..+|....+.++..+.|+.+.+.++. ++.+|.--..++.-.++++.|..=|++...- ++
T Consensus 353 I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~---n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 353 IKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE---NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred HhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC---CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence 665433222 2666667778888888888888888777655 7777777778888888888888888877653 34
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
..|-.+-.+..+.+++++++..|++.++ .++-.++.|+.....+...+++++|.+
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-------------------------kFP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKK-------------------------KFPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------hCCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 4555555566677788888888888877 344466789999999999999999999
Q ss_pred HHHhCC-CCCC---------hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 334 MVEKMP-VEPN---------GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 334 ~~~~m~-~~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
.|+... ++|+ +.+-..++-.- =.+++..|..+++++++++|....+|..|+..-.+.|+.++|+++|+.
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 998763 4444 22222333222 238999999999999999999999999999999999999999999986
Q ss_pred HH
Q 038673 404 LK 405 (548)
Q Consensus 404 m~ 405 (548)
-.
T Consensus 563 sa 564 (606)
T KOG0547|consen 563 SA 564 (606)
T ss_pred HH
Confidence 53
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=8.1e-11 Score=117.64 Aligned_cols=279 Identities=11% Similarity=0.023 Sum_probs=157.2
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCChhHHHHH-HHHHHHcCChHHHHHHHccCCC--CCeehHH--HHHHHHHhCCChHHHH
Q 038673 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTM-IGMYVKCGFLGCSRKVFDEMPE--RDVVSWT--ELIVAYANNGDMESAG 139 (548)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~--~~~~~~~--~li~~~~~~g~~~~A~ 139 (548)
.|+++.|.+......+.. +++.++-.+ .....+.|+++.|...|.++.+ |+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 588888887766544432 233333333 3444788899999999888765 3332222 2244566666666666
Q ss_pred HHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038673 140 GLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGF 216 (548)
Q Consensus 140 ~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 216 (548)
..++++. +.++.....+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 6666654 224556666677777777777777777777665533211 111000
Q ss_pred CCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 038673 217 GPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIG 293 (548)
Q Consensus 217 ~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 293 (548)
..+|..++....+..+.+...++++.+++ .++.....+..++...|+.++|.+++++..+. .||...
T Consensus 229 -----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--- 298 (398)
T PRK10747 229 -----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--- 298 (398)
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH---
Confidence 01122222222223334444455555442 35555666666666666666666666666552 222210
Q ss_pred HHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038673 294 VLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLF 371 (548)
Q Consensus 294 ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 371 (548)
.++.+....++.+++.+.+++.. ..|+ +.....+-..|...+++++|...|+.+.
T Consensus 299 -----------------------~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 299 -----------------------VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred -----------------------HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11122223466666666666553 3454 3344455566777777777777777777
Q ss_pred hcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 372 ELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 372 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+..|++. .+..|+.++.+.|+.++|.+++++-.
T Consensus 356 ~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 356 KQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred hcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777654 56677777777777777777766553
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=4.7e-11 Score=121.56 Aligned_cols=328 Identities=16% Similarity=0.139 Sum_probs=195.8
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCC---CCCeehHHHHHHHHHhCCChHHHHHH
Q 038673 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP---ERDVVSWTELIVAYANNGDMESAGGL 141 (548)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~ 141 (548)
.|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-... ..|..-|-.+.....+.|.++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 377777777777777765 6666677777777777777777666543322 23445566666666666666666666
Q ss_pred HccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038673 142 FNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYV----TLVGVISACAQLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 142 f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 214 (548)
|.+..+. +....---+..|-+.|+...|+.-|.++.+..-+.|.. +.-.++..+...++-+.|.+.+......
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 6655432 22222233445556666666666666665542111111 1222233344444445555555554442
Q ss_pred CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCh----------------------hhhH----HHHHHHH
Q 038673 215 GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ----RNV----------------------FSYS----SMILGFA 264 (548)
Q Consensus 215 ~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~----------------------~~~~----~li~~~~ 264 (548)
+..- .+...++.++.+|.+...++.|......+.. +|. .+|+ -++-++.
T Consensus 310 ~~~~-~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDE-ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred cccc-ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 1111 2444555566666666555555554443321 111 0111 0111222
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC---
Q 038673 265 MHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVE--- 341 (548)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 341 (548)
..+..+....+..-.....+.| .-+...|.-+.++|...|++.+|+.+|..+...
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~----------------------~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWV----------------------SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred cccccchHHHHHHHHHHhcCCh----------------------hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 2222222222222222222222 224567888999999999999999999988522
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeE
Q 038673 342 PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSW 417 (548)
Q Consensus 342 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 417 (548)
-+...|--+..++...|.++.|.+.+++++.+.|++..+-..|+.+|.+.|+.++|.+++..|..-+-...+++.|
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 2466898899999999999999999999999999999999999999999999999999999876333222244444
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=5e-12 Score=124.72 Aligned_cols=272 Identities=14% Similarity=0.033 Sum_probs=186.9
Q ss_pred hHHHHHHHccCCC--CCee-hHHHHHHHHHhCCChHHHHHHHccCCC------CChhHHHHHHHHHHHCCChhHHHHHHH
Q 038673 104 LGCSRKVFDEMPE--RDVV-SWTELIVAYANNGDMESAGGLFNELPL------KDKVAWTAMVTGYVQNAKPREAIEYFE 174 (548)
Q Consensus 104 ~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~ 174 (548)
..+|...|..+++ +|.. ....+..+|...+++++|+++|+.+.. .+...|.+.+..+-+. -++..+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence 4566666666554 3333 223455667777777777777776652 2556666666544221 1222222
Q ss_pred -HHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCCh
Q 038673 175 -RMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNV 253 (548)
Q Consensus 175 -~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 253 (548)
++... -+-...||..+...|+-.++.+.|.+.|+++++.+.. ...+|+.+..=+.....+|.|...|+.....|+
T Consensus 411 q~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~---faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 411 QDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR---FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc---cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 22221 1334567888888888888888888888888776644 778888888888888888888888888877666
Q ss_pred hhhHH---HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHH
Q 038673 254 FSYSS---MILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEE 330 (548)
Q Consensus 254 ~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 330 (548)
..||+ +...|.+.++++.|+-.|++..+ +.|.. ......+...+.+.|+.|+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~n-----------------------svi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSN-----------------------SVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccc-----------------------hhHHhhhhHHHHHhhhhhH
Confidence 55544 55578888888888888888876 55553 3345566777888888888
Q ss_pred HHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 331 ALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 331 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
|++++++.- +.| |+..----...+...+++++|.+.++++.++.|++...|..++..|-+.|+.+.|+.-|.-+.+..
T Consensus 542 AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 542 ALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 888888773 333 333333344556667888999999999999999998899999999999999999888887776543
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.47 E-value=4.1e-13 Score=128.09 Aligned_cols=219 Identities=16% Similarity=0.136 Sum_probs=104.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCC---CeehHHHHHHHHHhCCChHHHHHHHccCC--CCChhHHHHHHHHHHHCCC
Q 038673 91 GNTMIGMYVKCGFLGCSRKVFDEMPER---DVVSWTELIVAYANNGDMESAGGLFNELP--LKDKVAWTAMVTGYVQNAK 165 (548)
Q Consensus 91 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~ 165 (548)
|..+.......++.+.|.+.++++.+. +...+..++.. ...+++++|.+++...- .++...+..++..+.+.++
T Consensus 47 ~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 125 (280)
T PF13429_consen 47 WRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGD 125 (280)
T ss_dssp ------------------------------------------------------------------------H-HHHTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhH
Confidence 333333333444444444444444331 12223333333 34455555555444432 2355667777888888889
Q ss_pred hhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHH
Q 038673 166 PREAIEYFERMQYAG-VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244 (548)
Q Consensus 166 ~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~ 244 (548)
++++..+++...... .+++...|..+...+.+.|+.++|...++.+++..+. +..+.+.++..+...|+.+++.++
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~---~~~~~~~l~~~li~~~~~~~~~~~ 202 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD---DPDARNALAWLLIDMGDYDEAREA 202 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCChHHHHHH
Confidence 999988888876533 3456667777888888899999999999999888755 788888999999999999887777
Q ss_pred HhcCC---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHH
Q 038673 245 FVGMK---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDL 321 (548)
Q Consensus 245 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~ 321 (548)
+.... ..|...|..+..+|...|+.++|+..|++..+ ..|+ |+.....+.++
T Consensus 203 l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~-----------------------d~~~~~~~a~~ 257 (280)
T PF13429_consen 203 LKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPD-----------------------DPLWLLAYADA 257 (280)
T ss_dssp HHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT------------------------HHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--cccc-----------------------ccccccccccc
Confidence 76654 35677888999999999999999999999887 3444 44457778889
Q ss_pred HHHcCCHHHHHHHHHhC
Q 038673 322 LGRAGCLEEALKMVEKM 338 (548)
Q Consensus 322 ~~~~g~~~~A~~~~~~m 338 (548)
+...|+.++|.++..+.
T Consensus 258 l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 258 LEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HT---------------
T ss_pred ccccccccccccccccc
Confidence 99999999999887664
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.47 E-value=6.7e-11 Score=121.23 Aligned_cols=388 Identities=12% Similarity=0.045 Sum_probs=225.7
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC--CChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCC-hhH
Q 038673 14 YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIG--PVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSD-LYV 90 (548)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 90 (548)
..|++.-|.|..-|.-.|+++.++.+...+...... .-...|-.+.+++-..|+++.|.+.|-+..+.. +.+ +..
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccc
Confidence 347777888888888888888888888777764311 123457778888888888888888887777654 222 344
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCC----ChHHHHHHHccCCC----------------
Q 038673 91 GNTMIGMYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNG----DMESAGGLFNELPL---------------- 147 (548)
Q Consensus 91 ~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g----~~~~A~~~f~~m~~---------------- 147 (548)
+-.|..+|.+.|+++.+...|+.... | +..+...+...|+..+ ..+.|..++.+...
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 55677788888888888888887754 3 3345555555555553 34555555444332
Q ss_pred -------------------------CChhHHHHHHHHHHHCCChhHHHHHHHHHHHC---CCCCCH------hhHHHHHH
Q 038673 148 -------------------------KDKVAWTAMVTGYVQNAKPREAIEYFERMQYA---GVETDY------VTLVGVIS 193 (548)
Q Consensus 148 -------------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~------~t~~~ll~ 193 (548)
..+...|.+...+...|++++|...|...... ...+|. .+-..+..
T Consensus 425 e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 425 EQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 23334444444444455555555555444332 111121 11112222
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHH
Q 038673 194 ACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAH 270 (548)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 270 (548)
..-..++.+.|.+.|..+.+..+. -+..|--|+.+.-..+...+|...+..... .|+..|+.+-..|.....+.
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~---YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPG---YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCch---hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 333334455555555555444322 333333333233333444455555544432 34444544444555555555
Q ss_pred HHHHHHHHHHHcC-CCCCHhhHHHHHHHHhhcCC-----------------cc----CCC-CcCHHHHHHHHHHHHHcCC
Q 038673 271 AAIQLFGDMVKTE-TKPNGVTFIGVLTACSHVGL-----------------KC----YGV-SPSTDHYACMVDLLGRAGC 327 (548)
Q Consensus 271 ~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~-----------------~~----~~~-~p~~~~~~~li~~~~~~g~ 327 (548)
.|.+-|....+.- ..+|..+..+|=+.|...-. .. ... +.|...-|-+.-.++..|+
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC
Confidence 5555444443321 12444444433332221110 00 111 1244455556677788899
Q ss_pred HHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 328 LEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE--LEPDKIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 328 ~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
+.+|..+|.+.. ..-+..+|-.+..+|...|++..|+++|+...+ ...+++.....|++++.+.|+|.+|.+....
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999885 233567888899999999999999999999887 3334677888999999999999999988776
Q ss_pred HHh
Q 038673 404 LKM 406 (548)
Q Consensus 404 m~~ 406 (548)
...
T Consensus 742 a~~ 744 (1018)
T KOG2002|consen 742 ARH 744 (1018)
T ss_pred HHH
Confidence 654
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.45 E-value=4.9e-10 Score=110.14 Aligned_cols=367 Identities=13% Similarity=0.049 Sum_probs=258.1
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGM 97 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 97 (548)
.+|+.-.+.|.+.+.++-|..+|...++- ++-+...|......=-..|..+....+++.++.. .+.....|-....-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake 593 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKE 593 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHH
Confidence 35777777777777777777777777663 2224555666665555667777777777777765 35566666666777
Q ss_pred HHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCC--CCChhHHHHHHHHHHHCCChhHHHHH
Q 038673 98 YVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELP--LKDKVAWTAMVTGYVQNAKPREAIEY 172 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l 172 (548)
+...|++..|+.+++...+ | +...|-+-+..-..+.+++.|..+|.+.. .++...|..-+..---.++.++|+++
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 7777888888887777654 2 44567777777778888888888887765 34556666666666666778888888
Q ss_pred HHHHHHCCCCCCHh-hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-
Q 038673 173 FERMQYAGVETDYV-TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ- 250 (548)
Q Consensus 173 ~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 250 (548)
+++..+. -|+.. .|..+...+-+.++++.|...|..=.+.- | ..+..|-.|...=-+.|.+-.|..+|++..-
T Consensus 674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--P-~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--P-NSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--C-CCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 8777664 44443 44555566677777777777776544443 3 4677788888888888888888888887653
Q ss_pred --CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCH
Q 038673 251 --RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCL 328 (548)
Q Consensus 251 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 328 (548)
.|...|-..|..-.+.|+.+.|..+..+.++. ++.+...|..-|.+..+.++-
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-------------------------cp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-------------------------CPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------CCccchhHHHHHHhccCcccc
Confidence 35677888888888888888888877777663 122334466666666666665
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 329 EEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 329 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
....+.+++-. -|+...-.+-..+-....++.|..-|.+..+.+|++-.+|..+...+.+.|.-++-.++++......
T Consensus 804 Tks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 804 TKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred hHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 66666565553 4666666666777778889999999999999999999999999999999999888888888776533
Q ss_pred CccCCceeEEEcc
Q 038673 409 LKKNPGYSWLEGD 421 (548)
Q Consensus 409 ~~~~~~~s~~~~~ 421 (548)
|.-|..|+.+.
T Consensus 882 --P~hG~~W~avS 892 (913)
T KOG0495|consen 882 --PTHGELWQAVS 892 (913)
T ss_pred --CCCCcHHHHHh
Confidence 44566676443
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=1e-10 Score=116.90 Aligned_cols=269 Identities=9% Similarity=-0.001 Sum_probs=203.2
Q ss_pred CcchHHHhccCCCC--CcchHHHH-HHHHHhCCCchHHHHHHHHHHHCCCCCChhhHH--HHHHHhhccCCcHHHHHHHH
Q 038673 2 DSFPRLVFEQVKYK--NPFLWTAL-IRGYILQGHLKDSISLYCSMRREGIGPVSFTLS--ALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 2 ~~~A~~~f~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~a~~~~~~~~~a~~~~~ 76 (548)
++.|++.....+.. ++..+-.+ .....+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|.+.++
T Consensus 100 ~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~ 177 (398)
T PRK10747 100 YQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVD 177 (398)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45667777665542 22333333 33347889999999999999863 56654433 23456778899999999999
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCe-----------ehHHHHHHHHHhCCChHHHHHHHccC
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDV-----------VSWTELIVAYANNGDMESAGGLFNEL 145 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~~f~~m 145 (548)
.+.+.. |.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++.+
T Consensus 178 ~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 178 KLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 998875 77788899999999999999999998888875221 13444454445556667777777777
Q ss_pred CC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChH
Q 038673 146 PL---KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNV 222 (548)
Q Consensus 146 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 222 (548)
+. .++.....+...+...|+.++|.+++++..+. +||... .++.+....++.+++.+..+...+..+. +.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~---~~ 328 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD---TP 328 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC---CH
Confidence 63 47778888999999999999999999888774 455421 1233334558899999999988887755 88
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCC--CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMK--QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
....++...+.+.|++++|.+.|+... .|+...+..+...+...|+.++|.+++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 889999999999999999999999887 47878888899999999999999999987654
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.1e-11 Score=122.27 Aligned_cols=279 Identities=13% Similarity=0.076 Sum_probs=190.6
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC------CCeehHHHHHHHHHhCCChHHHHH
Q 038673 67 DVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE------RDVVSWTELIVAYANNGDMESAGG 140 (548)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~ 140 (548)
+.++|...|+.+.+. ......+...+..+|...+++++|+++|+.+.+ .+...|.+.+.-+-+.=.+.---+
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 356677777774333 334446677777888888888888888887765 366677777766554333322222
Q ss_pred HHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 038673 141 LFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPI 219 (548)
Q Consensus 141 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~ 219 (548)
-+-.+.+..+.+|-++..+|.-+++.+.|++.|++..+. .| ..++|+.+..-+.....+|.|...|+.++.....
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-- 487 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-- 487 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch--
Confidence 222233446778888888888888888888888877664 44 5667777777777777888888888877665433
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLT 296 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 296 (548)
+-.+|.-|...|.|.++++.|+-.|+++.+- +.+....+...+-+.|+.++|++++++... +.|.
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~k--------- 555 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPK--------- 555 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCC---------
Confidence 6666667788888888888888888877753 445555556667777888888888888766 2322
Q ss_pred HHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038673 297 ACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELE 374 (548)
Q Consensus 297 a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 374 (548)
|+..---.+..+...++.++|+..+++++ +.|+ ...+..+...|.+.|+.+.|..-|.-+.+++
T Consensus 556 --------------n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 556 --------------NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred --------------CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 22222334556666788888888888886 5566 4445555577888888888888888888888
Q ss_pred CCC
Q 038673 375 PDK 377 (548)
Q Consensus 375 p~~ 377 (548)
|.-
T Consensus 622 pkg 624 (638)
T KOG1126|consen 622 PKG 624 (638)
T ss_pred Ccc
Confidence 764
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.43 E-value=4.9e-10 Score=115.04 Aligned_cols=363 Identities=13% Similarity=0.092 Sum_probs=165.3
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhh--ccCCcHHHHHHHHHHHHhC-CCCCChhHHHHHHHHHHHcCChHHHHHH
Q 038673 34 KDSISLYCSMRREGIGPVSFTLSALFKACT--EVLDVSLGQQIHAQTILLG-GFTSDLYVGNTMIGMYVKCGFLGCSRKV 110 (548)
Q Consensus 34 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~--~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 110 (548)
+.|...|....+.. ++|. ...+.+||. ..+++..|..+|..++... ..+||+.+... .++.++|+.+.|...
T Consensus 147 ~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQS-PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHHH
Confidence 56666666665532 2222 333444443 3456666666666644432 13444443322 445566666666666
Q ss_pred HccCCCCCeehHHHHHHHH---H---hCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC
Q 038673 111 FDEMPERDVVSWTELIVAY---A---NNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV 181 (548)
Q Consensus 111 ~~~m~~~~~~~~~~li~~~---~---~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 181 (548)
|....+-|+..-++++... . ....+..+..++...- ..|++..+.|...|.-.|+++.+..+...+.....
T Consensus 222 ~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 222 FERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 6666553333222222211 1 1122333333333321 23555666666666666666666666655544321
Q ss_pred C--CCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhh
Q 038673 182 E--TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSY 256 (548)
Q Consensus 182 ~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~ 256 (548)
. .-...|..+..++-..|++++|.++|.+..+.... ..+..+.-|..+|.+.|+++.|...|+.+.+ .+..+.
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d--~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND--NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC--CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 1 11223555666666666666666666555554433 1244444556666666666666666665543 223344
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHhhHHHH------------HHHHhhcCC--ccCCCCcCHHHHHHH
Q 038673 257 SSMILGFAMHG----RAHAAIQLFGDMVKTETKPNGVTFIGV------------LTACSHVGL--KCYGVSPSTDHYACM 318 (548)
Q Consensus 257 ~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~l------------l~a~~~~~~--~~~~~~p~~~~~~~l 318 (548)
..+...|+..+ ..+.|..++.+..+. ..-|...|..+ +.++.++.. ...+-.+.++..|.+
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 44444444443 233444444433332 11122222222 222222221 222333455556666
Q ss_pred HHHHHHcCCHHHHHHHHHhCC------CCCCh-----hHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 319 VDLLGRAGCLEEALKMVEKMP------VEPNG-----GVWGALL-GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~------~~p~~-----~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
.......|.+++|...|.+.. ..+|. .|..-.+ ...-..++.+.|.+.+..+++..|.....|..|+.
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH
Confidence 666666666666666665442 11222 1111111 22223334555555555555555544444444443
Q ss_pred HHHHcCCchHHHHHHHHH
Q 038673 387 IYASAGMWDDVSRVRRLL 404 (548)
Q Consensus 387 ~~~~~g~~~~a~~~~~~m 404 (548)
+.-..+...+|...++..
T Consensus 539 ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDA 556 (1018)
T ss_pred HHHhccCcHHHHHHHHHH
Confidence 333334444444444443
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=1.5e-10 Score=116.29 Aligned_cols=277 Identities=13% Similarity=0.011 Sum_probs=157.8
Q ss_pred HcCChHHHHHHHccCCC--CCee-hHHHHHHHHHhCCChHHHHHHHccCCC--CC--hhHHHHHHHHHHHCCChhHHHHH
Q 038673 100 KCGFLGCSRKVFDEMPE--RDVV-SWTELIVAYANNGDMESAGGLFNELPL--KD--KVAWTAMVTGYVQNAKPREAIEY 172 (548)
Q Consensus 100 ~~g~~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~l 172 (548)
..|+++.|.+.+.+..+ |+.. .+-.......+.|+.+.|.+.|.+..+ |+ ....-.....+.+.|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34666666666655443 2221 222333445555666666666655421 22 22333345566667777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhH-------HHHHHHHHhcCCCHHHHHHHH
Q 038673 173 FERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVV-------GSALIDMYSKCGSIDDAYRIF 245 (548)
Q Consensus 173 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-------~~~li~~y~~~g~~~~A~~~~ 245 (548)
++++.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+ .... +..++..-......+...+.+
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~--~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD--DEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77776653 2244456666666777777777777777777665442 2211 111122212233345555556
Q ss_pred hcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH-HHHHHHhhcCCccCCCCcCHHHHHHHHHH
Q 038673 246 VGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFI-GVLTACSHVGLKCYGVSPSTDHYACMVDL 321 (548)
Q Consensus 246 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~~~~p~~~~~~~li~~ 321 (548)
...++ .++..+..+...+...|+.++|.+++++..+. .||..... .++. .-.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~----------------------~~~ 308 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCL----------------------PIP 308 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHH----------------------Hhh
Confidence 55553 36677777777777888888888888777773 44444210 0110 011
Q ss_pred HHHcCCHHHHHHHHHhCC-CCCCh---hHHHHHHHHHHhcCCHHHHHHHHH--HHhhcCCCCchhHHHHHHHHHHcCCch
Q 038673 322 LGRAGCLEEALKMVEKMP-VEPNG---GVWGALLGACQIHRNPEIAQIAAN--HLFELEPDKIGNYIILSNIYASAGMWD 395 (548)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~-~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~ 395 (548)
....++.+.+.+.+++.. ..|+. ....++-..|.+.|++++|.+.|+ ...+..|++. .+..++..+.+.|+.+
T Consensus 309 ~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 309 RLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKA 387 (409)
T ss_pred hcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHH
Confidence 122355566666665542 34442 445566677778888888888888 4555667655 4667888888888888
Q ss_pred HHHHHHHHH
Q 038673 396 DVSRVRRLL 404 (548)
Q Consensus 396 ~a~~~~~~m 404 (548)
+|.+++++-
T Consensus 388 ~A~~~~~~~ 396 (409)
T TIGR00540 388 EAAAMRQDS 396 (409)
T ss_pred HHHHHHHHH
Confidence 888877764
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=4.3e-10 Score=105.83 Aligned_cols=245 Identities=11% Similarity=0.040 Sum_probs=162.2
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCC
Q 038673 159 GYVQNAKPREAIEYFERMQYAGVETDYVTLV--GVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 159 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g 236 (548)
-|.++|+++.|+++++-+.+..-+.-...-+ .++.......++..|.++-+..+...-- +......-.+.-...|
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry---n~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY---NAAALTNKGNIAFANG 504 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc---CHHHhhcCCceeeecC
Confidence 3567777777777776665543221111111 1222222234566666666655543322 3333333344445679
Q ss_pred CHHHHHHHHhcCCCCChhhhHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC---------c
Q 038673 237 SIDDAYRIFVGMKQRNVFSYSSMIL---GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---------K 304 (548)
Q Consensus 237 ~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~ 304 (548)
++++|.+.+.+....|...-.+|.. .+-..|+.++|++.|-++..- +.-+...+..+.+-|..... .
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 9999999999998877655444433 466789999999999877542 23334444444444443332 2
Q ss_pred cCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHh-CC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 305 CYG-VSPSTDHYACMVDLLGRAGCLEEALKMVEK-MP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 305 ~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
... ++-|+...+.|.++|-+.|+-.+|.+.+-+ .. +..+..+..-|...|....-.++++..|++..-+.|+....-
T Consensus 584 ~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 223 444788899999999999999999987644 34 445677777777778888888999999999988999877566
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 382 IILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
..++.++-+.|+++.|.++++....+
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66677778899999999999988643
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=1.4e-10 Score=117.53 Aligned_cols=376 Identities=14% Similarity=0.088 Sum_probs=246.7
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHH
Q 038673 14 YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNT 93 (548)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (548)
.||-+||..+|..|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.++ .|...+|+.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhHHHH
Confidence 578899999999999999999988 9999988887778889999999988888876554 678889999
Q ss_pred HHHHHHHcCChHH---HHHHHccCCC-------------------------CCeehHHHHHHHHHhCCChHHHHHHHccC
Q 038673 94 MIGMYVKCGFLGC---SRKVFDEMPE-------------------------RDVVSWTELIVAYANNGDMESAGGLFNEL 145 (548)
Q Consensus 94 li~~~~~~g~~~~---A~~~~~~m~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~f~~m 145 (548)
|..+|...||+.. .++.+..+.. ||.. ..+.-....|-++.+.+++..+
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999998654 3332222211 1111 1222233334444444443222
Q ss_pred C----------------------------------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 038673 146 P----------------------------------LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGV 191 (548)
Q Consensus 146 ~----------------------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 191 (548)
+ .++..+|.+++..-..+|+.+.|..++.+|++.|++.+.+-|..+
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 1 257778889999999999999999999999999999988888877
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHH------------------------HHHhc
Q 038673 192 ISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY------------------------RIFVG 247 (548)
Q Consensus 192 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~------------------------~~~~~ 247 (548)
+-+ .++...+..+.+-|...|+.| +..|+.-.+-...+.|....+. +.++.
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p--~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQP--GSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCC--CcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHH
Confidence 765 788888889999999999996 7777766655555543322111 11110
Q ss_pred C---------CC-------CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC-HhhHHHHHHHHhhcC------
Q 038673 248 M---------KQ-------RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT--ETKPN-GVTFIGVLTACSHVG------ 302 (548)
Q Consensus 248 ~---------~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~-~~t~~~ll~a~~~~~------ 302 (548)
- ++ ....+|...+. ...+|..++.+++...|..- ...|+ ...|..++.-|.+.-
T Consensus 321 nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~ 399 (1088)
T KOG4318|consen 321 NLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICS 399 (1088)
T ss_pred HHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHH
Confidence 0 00 11123333332 23356655555555544321 11121 111222221111110
Q ss_pred --------C-----------------------------------ccCCC-------------------------------
Q 038673 303 --------L-----------------------------------KCYGV------------------------------- 308 (548)
Q Consensus 303 --------~-----------------------------------~~~~~------------------------------- 308 (548)
. ...-.
T Consensus 400 ~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l 479 (1088)
T KOG4318|consen 400 RIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKIL 479 (1088)
T ss_pred HHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000
Q ss_pred --------CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh---
Q 038673 309 --------SPSTDHYACMVDLLGRAGCLEEALKMVEKMP-----VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE--- 372 (548)
Q Consensus 309 --------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--- 372 (548)
..-...|..||+.+......++|..+.++.. ..-|..-+..+.+...+++....+..+.+.+.+
T Consensus 480 ~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~ 559 (1088)
T KOG4318|consen 480 CDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAE 559 (1088)
T ss_pred HHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhh
Confidence 0012447788888888888999998888885 234455577778888888888889888888877
Q ss_pred cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 038673 373 LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411 (548)
Q Consensus 373 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 411 (548)
..|.......-+.+..+..|+.+...++++-+...|+.-
T Consensus 560 n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 560 NEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred CCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 334445566677788888999999999999888888865
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1e-09 Score=103.85 Aligned_cols=303 Identities=14% Similarity=0.095 Sum_probs=212.6
Q ss_pred hCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCC-CChhHHHHHHHHHHHcCChHHH
Q 038673 29 LQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFT-SDLYVGNTMIGMYVKCGFLGCS 107 (548)
Q Consensus 29 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A 107 (548)
.....++++.-.+.....|++-+...-+....+.-...|++.|..+|+.+.+..++. .|..+|+.++-.--.+..+.--
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 334556666666666666654444333333334445677788888888877765332 2456666665433222222221
Q ss_pred HHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC
Q 038673 108 RKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPL---KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184 (548)
Q Consensus 108 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 184 (548)
....-.+.+--+.|...+.+-|.-.++.++|...|++..+ +....|+.|..-|....+...|.+-|+...+-. +.|
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~D 397 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRD 397 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chh
Confidence 1122223333455666777788888999999999998763 356789999999999999999999999998864 558
Q ss_pred HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHH
Q 038673 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMIL 261 (548)
Q Consensus 185 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 261 (548)
-..|-.+..+|.-.+...-|.-+|+++.+..+ .|..+|.+|.+.|.+.+++++|.+.|.+... .+...+..+..
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP---nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKP---NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 88999999999999999999999999988764 4999999999999999999999999998764 34478999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 038673 262 GFAMHGRAHAAIQLFGDMVKT----ETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEK 337 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (548)
.|-+.++.++|...|++-++. |..-+ .| ...-.-|..-+.+.+++++|......
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~-~t---------------------~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDD-ET---------------------IKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccch-HH---------------------HHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 999999999999998876652 22211 11 12223356667788888888665443
Q ss_pred CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038673 338 MPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 338 m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 372 (548)
.. .. ....++|..+++++.+
T Consensus 533 ~~-------------~~--~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 533 VL-------------KG--ETECEEAKALLREIRK 552 (559)
T ss_pred Hh-------------cC--CchHHHHHHHHHHHHH
Confidence 32 11 2235777777777666
No 45
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=4.3e-11 Score=121.23 Aligned_cols=259 Identities=17% Similarity=0.183 Sum_probs=185.9
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 038673 171 EYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 171 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 250 (548)
.++-.+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-.... .+..+++.++......++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLp--v~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLP--VREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccccc--ccchhHHHHHhcccccccccCCC-------C
Confidence 45677888999999999999999999999999999 99999877766 68999999999999999888776 7
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHH-HHH-------cCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHH
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGD-MVK-------TETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLL 322 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~-------~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~ 322 (548)
|...+|+.|..+|..+|+... ++..++ |.. .|+..-..-|...+++| -+.-||. ...+..+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~-------p~~lpda---~n~illl 149 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCC-------PHSLPDA---ENAILLL 149 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccC-------cccchhH---HHHHHHH
Confidence 888999999999999999765 222222 221 22222222222222222 1233443 3456667
Q ss_pred HHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 038673 323 GRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHR-NPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 323 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 401 (548)
.-.|.++.+++++..+|...-..++..++.-+.... .+++-....+...+ . .++.+|..+...-..+|+.+.|..++
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~-~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-A-PTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-C-CChHHHHHHHHHHHhcCchhhHHHHH
Confidence 778999999999999983222112222354444433 34444444444444 3 45669999999999999999999999
Q ss_pred HHHHhCCCccCCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccC
Q 038673 402 RLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQPNLRSVLYDV 468 (548)
Q Consensus 402 ~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~ 468 (548)
..|+++|++..+.+.|.++- |.. ....+..+..-|++.|+.|+.++...-+
T Consensus 228 ~emke~gfpir~HyFwpLl~---------g~~-------~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLL---------GIN-------AAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred HHHHHcCCCcccccchhhhh---------cCc-------cchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 99999999999999998765 321 1223356788999999999988776544
No 46
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=2.1e-12 Score=86.98 Aligned_cols=50 Identities=26% Similarity=0.573 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTE 64 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 64 (548)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999864
No 47
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=3.5e-12 Score=85.94 Aligned_cols=50 Identities=26% Similarity=0.531 Sum_probs=48.0
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhh
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSH 300 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 300 (548)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.33 E-value=1.1e-09 Score=110.17 Aligned_cols=271 Identities=10% Similarity=-0.004 Sum_probs=196.2
Q ss_pred CcchHHHhccCCC--CCcc-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh--hHHHHHHHhhccCCcHHHHHHHH
Q 038673 2 DSFPRLVFEQVKY--KNPF-LWTALIRGYILQGHLKDSISLYCSMRREGIGPVSF--TLSALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 2 ~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~~~~~~a~~~~~ 76 (548)
++.|++.+...++ |+.. .+-.......+.|+++.|.+.|.+..+. .|+.. .-..........|+++.|...++
T Consensus 100 ~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 100 YAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4566777665553 3322 2333345677789999999999998764 35543 33334667788899999999999
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCC---CeehH--------HHHHHHHHhCCChHHHHHHHccC
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPER---DVVSW--------TELIVAYANNGDMESAGGLFNEL 145 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~--------~~li~~~~~~g~~~~A~~~f~~m 145 (548)
.+.+.. |.+..+...+..+|...|++++|.+.+..+.+. +...+ ..++..-......+...+.....
T Consensus 178 ~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 178 KLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 999886 677888999999999999999999999888753 22222 11121112233344555556666
Q ss_pred CC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHH--HHccCChhHHHHHHHHHHHcCCCCC
Q 038673 146 PL---KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLV-GVISA--CAQLGVIKYANWVCEIAEGSGFGPI 219 (548)
Q Consensus 146 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~--~~~~g~~~~a~~~~~~~~~~~~~p~ 219 (548)
+. .+...+..+...+...|+.++|.+++++..+. .||..... .++.. ....++.+.+.+.++...+..+.
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-- 331 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-- 331 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC--
Confidence 53 47888999999999999999999999999876 34443210 12222 23457778888888888877654
Q ss_pred ChH--hHHHHHHHHHhcCCCHHHHHHHHhc--CC--CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 220 NNV--VVGSALIDMYSKCGSIDDAYRIFVG--MK--QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 220 ~~~--~~~~~li~~y~~~g~~~~A~~~~~~--~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
++ ....++...+.+.|++++|.+.|+. .. .|+...+..+...+.+.|+.++|.++|++...
T Consensus 332 -~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 -KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66 7788999999999999999999993 42 58888888999999999999999999998654
No 49
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.33 E-value=3.3e-08 Score=97.59 Aligned_cols=267 Identities=10% Similarity=0.032 Sum_probs=204.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 038673 121 SWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQ 197 (548)
Q Consensus 121 ~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 197 (548)
||+.-...|.+.+.++-|..+|.... ..+...|...+..--..|..++-..+|++.... ++-....+.......-.
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHh
Confidence 45555555666666666666665544 335667777777767778888889999888775 23333344444555677
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CChhhhHHHHHHHHhcCCHHHHHHH
Q 038673 198 LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNVFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 198 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l 275 (548)
.|++..|..++..+.+.... +..+|.+-+..-.....++.|..+|.+... ++...|.--+..--..++.++|+++
T Consensus 597 agdv~~ar~il~~af~~~pn---seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPN---SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCC---cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 79999999999999888755 888999999999999999999999988763 6667777777777778999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHH
Q 038673 276 FGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM-PVEPN-GGVWGALLGA 353 (548)
Q Consensus 276 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~ 353 (548)
+++.++ .-|+.. ..|..+.+.+-+.++++.|.+.|..- +.-|+ ...|-.|...
T Consensus 674 lEe~lk--~fp~f~-----------------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 674 LEEALK--SFPDFH-----------------------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred HHHHHH--hCCchH-----------------------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 988887 455544 44778888899999999998888665 35566 5567666677
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEE
Q 038673 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWL 418 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 418 (548)
--+.|++-.|..++++..-.+|.+...|...+.+-.+.|+.+.|..+..+.... -|..|.-|.
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWa 791 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWA 791 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHH
Confidence 788889999999999999999999999999999999999999999887766543 244455554
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=8.6e-09 Score=97.94 Aligned_cols=396 Identities=11% Similarity=0.072 Sum_probs=243.6
Q ss_pred CcchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh-hHHHHHHHhhccCCcHHHHHHHHH
Q 038673 2 DSFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSF-TLSALFKACTEVLDVSLGQQIHAQ 77 (548)
Q Consensus 2 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~ 77 (548)
+..|+.+|++.. .++...|-.-+..=.++.....|..+|++.... -|-.. .|---+..=-..|++..|+++|+.
T Consensus 89 ~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 89 IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 456888887655 466777888888888888999999999988863 34322 222222233456888999999988
Q ss_pred HHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCC--CCCeehHHHHHHHHHhCCChHHHHHHHccCCCC------C
Q 038673 78 TILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP--ERDVVSWTELIVAYANNGDMESAGGLFNELPLK------D 149 (548)
Q Consensus 78 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~ 149 (548)
-++ ..|+...|++.|+.=.+...++.|+.+++... .|++.+|--...-=.+.|....|..+|+...+. +
T Consensus 167 W~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 167 WME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 776 68999999999999889999999999998865 588888888888888889888888888765422 2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCh---hHHHH-----HHHHHHHcCCCCC
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD--YVTLVGVISACAQLGVI---KYANW-----VCEIAEGSGFGPI 219 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~---~~a~~-----~~~~~~~~~~~p~ 219 (548)
...+++...--.++..++.|.-+|+-.... ++-+ ...|......=-+-|+. +.+.- -++.+++.+ |
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n--p- 319 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN--P- 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC--C-
Confidence 334555555555667778888887766653 2323 22333333332233433 33221 223344444 3
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CCh---hhhHHHHH--------HHHhcCCHHHHHHHHHHHHHcCCCC
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNV---FSYSSMIL--------GFAMHGRAHAAIQLFGDMVKTETKP 286 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~--------~~~~~g~~~~A~~l~~~m~~~g~~p 286 (548)
.|-.+|--.+..-...|+.+...++|++... |.. ..|.-.|- .=....+.+.+.++|+..++. ++-
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 4777888888888888999999999988763 211 12322221 112457888888899888873 444
Q ss_pred CHhhHHHHHHHHhhcCC-------------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHH
Q 038673 287 NGVTFIGVLTACSHVGL-------------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALL 351 (548)
Q Consensus 287 ~~~t~~~ll~a~~~~~~-------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll 351 (548)
...||.-+=-.+++-.. ...|..|...++...|..-.+.+.++....++++.. ..| |..+|.-..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 45666544333322110 344555555555555555555555555555555542 333 244555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCC--chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 352 GACQIHRNPEIAQIAANHLFELEPDK--IGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
..-...|+.+.|..+|+.++.....+ ...+...+..-...|.++.|..+++++.++
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 55555555566655555555411111 113334444445555555666555555543
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.2e-09 Score=97.60 Aligned_cols=299 Identities=14% Similarity=0.117 Sum_probs=186.8
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHH-HHHHHHHHHC
Q 038673 85 TSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAW-TAMVTGYVQN 163 (548)
Q Consensus 85 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~li~~~~~~ 163 (548)
..|.+.+-.....+-+.|..+.|.+.|-.....-+..|.+.+...--..+.+.+..+-...+..+...- --+..+|-..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 445444444444566777888888888777665555666655554444455554444434433221111 1233455566
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHH
Q 038673 164 AKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~ 243 (548)
.+.++++.-.......|++-+...-+....+.-...++++|..+|+.+.+..+--..+..+|+.++-.-..+.++.---+
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 67788888777787777665555444455555677789999999999888753323466777776655444434333222
Q ss_pred HHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHH
Q 038673 244 IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLG 323 (548)
Q Consensus 244 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~ 323 (548)
..-.+.+--+.|...+.+-|...++.++|+..|++.++ +.|.. ...|+.|..-|.
T Consensus 321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~-----------------------~~aWTLmGHEyv 375 (559)
T KOG1155|consen 321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKY-----------------------LSAWTLMGHEYV 375 (559)
T ss_pred HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcch-----------------------hHHHHHhhHHHH
Confidence 22333333455666667777777788888888888776 33332 234666667777
Q ss_pred HcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 038673 324 RAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 324 ~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 401 (548)
...+...|.+-++... +.| |-..|-.|-.+|...+...-|.-.|+++.++.|+++..+..|+++|.+.++.++|++.+
T Consensus 376 EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 7777777777776653 333 56677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhCC
Q 038673 402 RLLKMTG 408 (548)
Q Consensus 402 ~~m~~~g 408 (548)
+.....|
T Consensus 456 krai~~~ 462 (559)
T KOG1155|consen 456 KRAILLG 462 (559)
T ss_pred HHHHhcc
Confidence 6665443
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=1.1e-08 Score=92.88 Aligned_cols=217 Identities=16% Similarity=0.101 Sum_probs=125.4
Q ss_pred CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHHcCChHHHH
Q 038673 31 GHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDL--YVGNTMIGMYVKCGFLGCSR 108 (548)
Q Consensus 31 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~ 108 (548)
+++++|+++|-+|.+.. +-+..+--+|.+.+.+.|..+.|..+|..++++.+++.+. .....
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~q--------------- 112 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQ--------------- 112 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHH---------------
Confidence 45566666666665521 1122333345555555666666666666555432111111 11122
Q ss_pred HHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH
Q 038673 109 KVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY 185 (548)
Q Consensus 109 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 185 (548)
|..-|...|-+|.|+++|..+.+. -......|+..|-+..+|++|++.-+++.+.+-.+..
T Consensus 113 ----------------L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 113 ----------------LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred ----------------HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence 333344444455555555554432 1334556677777777777777777777665544432
Q ss_pred h----hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCCh----hhhH
Q 038673 186 V----TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNV----FSYS 257 (548)
Q Consensus 186 ~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----~~~~ 257 (548)
+ .|.-+...+....+++.|...++.+.+.+.. .+.+--.+.+.+...|+++.|.+.++.+.+.|+ .+..
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~---cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKK---CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc---ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 2 2444555555556777777777777776644 666666777777777777777777777776554 2455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 258 SMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 258 ~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
.|..+|.+.|+.++.+..+.++.+.
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6666777777777777777777664
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=2.7e-08 Score=93.06 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=67.5
Q ss_pred CCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCC----CeehHHHHHHHHHhCCChHHHHHH
Q 038673 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPER----DVVSWTELIVAYANNGDMESAGGL 141 (548)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~ 141 (548)
|++..|.+......+.+ +-....|..-+.+--..|+.+.+-.++.+..++ +....-+........|+++.|..-
T Consensus 98 G~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred CcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 55555555555544433 222223333334444555555555555554432 222333444444555555555444
Q ss_pred H---ccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC
Q 038673 142 F---NELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184 (548)
Q Consensus 142 f---~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 184 (548)
. .+|...++........+|.+.|++.+...++..|.+.|+--|
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~ 221 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD 221 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh
Confidence 3 345566788888888999999999999999999988876544
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=2.5e-09 Score=98.76 Aligned_cols=191 Identities=14% Similarity=0.058 Sum_probs=112.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhc
Q 038673 190 GVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMH 266 (548)
Q Consensus 190 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 266 (548)
.+...+...|++++|...++.+.+... .+...+..+...|...|++++|.+.|++..+ .+...+..+...+...
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDP---DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 333344444444444444444443321 2344444445555555555555555544432 2233445555555666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-h
Q 038673 267 GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-G 344 (548)
Q Consensus 267 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~ 344 (548)
|++++|.+.|++.......|. ....+..+...+...|++++|.+.+++.. ..|+ .
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 169 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQ-----------------------PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP 169 (234)
T ss_pred ccHHHHHHHHHHHHhcccccc-----------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh
Confidence 666666666666654211111 12334555666777777777777776653 3333 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 345 GVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 345 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
..+..+...+...|+++.|...+++..+..|.++..+..++..+...|+.++|..+.+.+.+
T Consensus 170 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 170 ESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 56666777777888888888888888877777777777788888888888888887776653
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=8.5e-09 Score=93.52 Aligned_cols=207 Identities=14% Similarity=0.039 Sum_probs=121.1
Q ss_pred CcchHHHhccCCCCCcchHH---HHHHHHHhCCCchHHHHHHHHHHHCCCCCChh------hHHHHHHHhhccCCcHHHH
Q 038673 2 DSFPRLVFEQVKYKNPFLWT---ALIRGYILQGHLKDSISLYCSMRREGIGPVSF------TLSALFKACTEVLDVSLGQ 72 (548)
Q Consensus 2 ~~~A~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~ll~a~~~~~~~~~a~ 72 (548)
.+.|..+|-+|.+-|+.++. +|-.-|-+.|..+.|+.+-+.+.++ ||.. ..-.|.+-|...|-++.|.
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 57899999999887776654 5667788899999999999999875 5432 2344556677788888999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHH--------HHHHHHhCCChHHHHHHHcc
Q 038673 73 QIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTE--------LIVAYANNGDMESAGGLFNE 144 (548)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--------li~~~~~~g~~~~A~~~f~~ 144 (548)
.+|..+...+ ..-......|+..|-...++++|.++-+++..-+...++. +...+....+++.|..++.+
T Consensus 128 ~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 128 DIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9998887765 4455667778888888888888887766554433222222 22223333444444444444
Q ss_pred CCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 038673 145 LPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEG 213 (548)
Q Consensus 145 m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 213 (548)
..+. .+..--.+.+.+...|+++.|.+.++...+.+..--..+...+..+|...|+.+++...+..+.+
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3321 12222223334444444444444444444432222222333444444444444444444444443
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.20 E-value=7.2e-09 Score=95.72 Aligned_cols=197 Identities=15% Similarity=0.111 Sum_probs=148.4
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN---NGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHH
Confidence 4567777888888888888888888877653 334556677777888888888888888888876644 667778888
Q ss_pred HHHhcCCCHHHHHHHHhcCCC-----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQ-----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
..|...|++++|.+.|++..+ .....+..+...+...|++++|...+.+.... .|+
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----------------- 167 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQ----------------- 167 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC-----------------
Confidence 888888999999888888753 12345667777888889999999999888763 333
Q ss_pred cCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038673 305 CYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V-EPNGGVWGALLGACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
+...+..+...+...|++++|.+.+++.. . ..+...+..+...+...|+.+.|....+.+.+..|
T Consensus 168 ------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 168 ------RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred ------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 23456677888888999999998888763 2 23456666677788888999999888887766543
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.1e-09 Score=99.26 Aligned_cols=224 Identities=13% Similarity=0.060 Sum_probs=191.4
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHh
Q 038673 154 TAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYS 233 (548)
Q Consensus 154 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~ 233 (548)
+.|.++|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+..+.+.|..++.+-++.-+. ++....-....+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~---~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF---DVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc---hhhhhhhhHHHHH
Confidence 46888999999999999999988776 566778999999999999999999999998877644 7777788889999
Q ss_pred cCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCc
Q 038673 234 KCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSP 310 (548)
Q Consensus 234 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p 310 (548)
..++.++|.++++...+ .|+.+.-.+..+|.-.++++.|+..|+++++.|+.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~------------------------- 356 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ------------------------- 356 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-------------------------
Confidence 99999999999998875 45666667778899999999999999999998765
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP---VEPN--GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
+++.|+.+.-.+.-.+++|-++.-|++.. ..|+ ..+|-.+-......||...|.+.|+..+..+|++..+++.|+
T Consensus 357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa 436 (478)
T KOG1129|consen 357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA 436 (478)
T ss_pred ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence 34557777777777888888888887663 2355 667888888888899999999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHhC
Q 038673 386 NIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 386 ~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
-.-.+.|++++|..+++.....
T Consensus 437 vL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 437 VLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhcCchHHHHHHHHHhhhh
Confidence 9999999999999999887653
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.17 E-value=5.7e-08 Score=90.95 Aligned_cols=252 Identities=11% Similarity=0.029 Sum_probs=159.9
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHH
Q 038673 27 YILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGC 106 (548)
Q Consensus 27 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 106 (548)
--+.|+.+.|-..+.+..+..-.++...+-+..+.....|+...|..-.+.+.+.+ +.++.+......+|.+.|++..
T Consensus 128 A~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 128 AQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHH
Confidence 33445555555555555442112233333333444445555555555555555554 4455555555555555555555
Q ss_pred HHHHHccCCCCC-----------eehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHH
Q 038673 107 SRKVFDEMPERD-----------VVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEY 172 (548)
Q Consensus 107 A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l 172 (548)
...++..+.+.. ..+|+.+++-....+..+.-...++..+ ..++..-.+++.-+.+.|+.++|.++
T Consensus 206 ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~ 285 (400)
T COG3071 206 LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEI 285 (400)
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHH
Confidence 555555554311 1244555554444444444444455554 22455666777778888888889888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC--C
Q 038673 173 FERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK--Q 250 (548)
Q Consensus 173 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~ 250 (548)
..+-.+.+..|+.. .+-.+.+.++.+.-.+..+.-.+.... ++..+.+|...|.+.+.+.+|...|+... +
T Consensus 286 i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~---~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 286 IEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE---DPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 88888877666622 223345667777777776666665544 77889999999999999999999999776 4
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPN 287 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 287 (548)
++..+|+-+..++.+.|+..+|.+.+++....-..|+
T Consensus 359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 359 PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 7889999999999999999999999988775444444
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.16 E-value=6.8e-09 Score=108.49 Aligned_cols=237 Identities=12% Similarity=0.001 Sum_probs=125.2
Q ss_pred chHHHHHHHHHHHCCCCCCh-hhHHHHHHHhh---------ccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 038673 33 LKDSISLYCSMRREGIGPVS-FTLSALFKACT---------EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCG 102 (548)
Q Consensus 33 ~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 102 (548)
.++|++.|++..+. .|+. ..|..+..++. ..+++++|...++.+++.. +.+...+..+..++...|
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcc
Confidence 45666677666653 4432 33333333222 1233566666666666654 555666666666666667
Q ss_pred ChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 038673 103 FLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELPL--K-DKVAWTAMVTGYVQNAKPREAIEYFERM 176 (548)
Q Consensus 103 ~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 176 (548)
++++|...|++..+ | +...|..+...+...|++++|...|++... | +...+..++..+...|++++|+..+++.
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 77777777766554 3 234555666666666676666666666542 2 2222233333455566666666666665
Q ss_pred HHCCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----
Q 038673 177 QYAGVETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ----- 250 (548)
Q Consensus 177 ~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----- 250 (548)
.... .|+ ...+..+..++...|+.++|...+..+..... .+....+.+...|...| +.|...++.+.+
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI---TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc---hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 5432 232 22344455555666666666666666544432 24455555555666655 355555554432
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
+.-..+ +-..|+-.|+.+.+..+ +++.+.
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 111122 23334445555555444 555553
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.16 E-value=7e-09 Score=108.39 Aligned_cols=257 Identities=12% Similarity=-0.030 Sum_probs=171.6
Q ss_pred CeehHHHHHHHHHh-----CCChHHHHHHHccCCCC---ChhHHHHHHHHHHH---------CCChhHHHHHHHHHHHCC
Q 038673 118 DVVSWTELIVAYAN-----NGDMESAGGLFNELPLK---DKVAWTAMVTGYVQ---------NAKPREAIEYFERMQYAG 180 (548)
Q Consensus 118 ~~~~~~~li~~~~~-----~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g 180 (548)
+...|...+.+-.. .+.+++|..+|++.... +...|..+..+|.. .+++++|...+++..+..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 44455555555321 23467888888877633 34566666554432 244788898888887753
Q ss_pred CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CCh-hhhH
Q 038673 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNV-FSYS 257 (548)
Q Consensus 181 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~ 257 (548)
+-+...+..+...+...|++++|...++++.+.++. +...+..+...|...|++++|...+++..+ |+. ..+.
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI---SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 335566777777778888999999999998887754 777888888889999999999999988764 322 2333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 038673 258 SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEK 337 (548)
Q Consensus 258 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (548)
.++..+...|++++|+..+++.... ..|+. +..+..+..+|...|++++|...+++
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~-----------------------~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ-HLQDN-----------------------PILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh-ccccC-----------------------HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4444566688889999998887763 12332 23456677788889999999999988
Q ss_pred CC-CCCChhH-HHHHHHHHHhcCCHHHHHHHHHHHhh---cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 338 MP-VEPNGGV-WGALLGACQIHRNPEIAQIAANHLFE---LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 338 m~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
+. ..|+... ++.+...+...| +.|...++.+.+ ..|.++ ..+...|+-.|+-+.+..+ +++.+.|
T Consensus 467 ~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 467 ISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 74 4455333 334445556666 477777777766 334333 2356667777777777666 6666544
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=1.2e-08 Score=101.99 Aligned_cols=234 Identities=17% Similarity=0.143 Sum_probs=176.9
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHC-----C-CCCCHhhH-HHHHHHHHccCChhHHHHHHHHHHHc-----CCC-
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYA-----G-VETDYVTL-VGVISACAQLGVIKYANWVCEIAEGS-----GFG- 217 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~- 217 (548)
.+...+...|...|++++|+.+++...+. | ..|...+. ..+...|...+++.+|..+|+.+... |..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555889999999999999999887653 2 23444433 34667788999999999999988642 222
Q ss_pred CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC----------CCh-hhhHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 038673 218 PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ----------RNV-FSYSSMILGFAMHGRAHAAIQLFGDMVKT---E 283 (548)
Q Consensus 218 p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g 283 (548)
| .-..+++.|...|.+.|++++|...+++..+ +.+ ...+.++..+...+++++|..++++..+. -
T Consensus 280 ~-~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 280 P-AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred H-HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 3456777888899999999998888776642 222 24666777889999999999999977652 1
Q ss_pred CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC---------CCCC-hhHHHHHHHH
Q 038673 284 TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP---------VEPN-GGVWGALLGA 353 (548)
Q Consensus 284 ~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~~ 353 (548)
..++.+. -..+|+.|...|...|++++|.+++++.- ..+. ...++.|-.+
T Consensus 359 ~g~~~~~--------------------~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~ 418 (508)
T KOG1840|consen 359 PGEDNVN--------------------LAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEA 418 (508)
T ss_pred ccccchH--------------------HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHH
Confidence 2222211 24679999999999999999999998772 1222 4567778889
Q ss_pred HHhcCCHHHHHHHHHHHhh----cCCC---CchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 354 CQIHRNPEIAQIAANHLFE----LEPD---KIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
|.+.++++.|.++|.+... ..|+ ...+|..|+..|.+.|++++|.++.....
T Consensus 419 ~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 419 YEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999999999999987665 3444 45688899999999999999999988775
No 62
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=1.8e-07 Score=89.24 Aligned_cols=370 Identities=12% Similarity=0.085 Sum_probs=234.8
Q ss_pred chHHHhcc-CC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 038673 4 FPRLVFEQ-VK-YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILL 81 (548)
Q Consensus 4 ~A~~~f~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~ 81 (548)
.|+++|++ |. +|+...|++.|..=.+-...+.|..++++..- +.|+..+|.--.+.=-+.|....++++++.++..
T Consensus 159 gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 159 GARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 45555542 22 45666666666666666666666666666554 3466666555555555556666666666655553
Q ss_pred CCC-CCChhHHHHHHHHHHHcCChHHHHHHHccC----CC-CCeehHHHHHHHHHhCCChHHHHHH--------HccCCC
Q 038673 82 GGF-TSDLYVGNTMIGMYVKCGFLGCSRKVFDEM----PE-RDVVSWTELIVAYANNGDMESAGGL--------FNELPL 147 (548)
Q Consensus 82 ~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~-~~~~~~~~li~~~~~~g~~~~A~~~--------f~~m~~ 147 (548)
-+- ..+...+.+....=.++..++.|.-+|.-. +. +....|.....-=-+.|+.....+. ++.+..
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 100 111223333333333444555555554322 22 1222333333333334443333332 122222
Q ss_pred C---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-------hhHHHHHHHH---HccCChhHHHHHHHHHHHc
Q 038673 148 K---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY-------VTLVGVISAC---AQLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 148 ~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~ 214 (548)
. |-.+|-..++.--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.+.++++..++
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 2 5567888888888889999999999998764 56632 1232222222 346789999999999888
Q ss_pred CCCCCChHhHHHHHHHHHh----cCCCHHHHHHHHhcCC--CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 038673 215 GFGPINNVVVGSALIDMYS----KCGSIDDAYRIFVGMK--QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 215 ~~~p~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 288 (548)
+.| ....++.-+--+|+ ++.++..|.+++.... -|-..++...|..=.+.++++....++++.++- .|.
T Consensus 395 -lIP-HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe- 469 (677)
T KOG1915|consen 395 -LIP-HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPE- 469 (677)
T ss_pred -hcC-cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChH-
Confidence 334 46666666655555 6789999999998876 366778888888888999999999999999883 343
Q ss_pred hhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCCHHHHH
Q 038673 289 VTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPN----GGVWGALLGACQIHRNPEIAQ 364 (548)
Q Consensus 289 ~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~ 364 (548)
+..+|......-...|+.+.|..+|+-...+|. ...|.+.|.--...|..+.|.
T Consensus 470 ----------------------~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 470 ----------------------NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred ----------------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 345677777777788999999999987754453 567888888888899999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHH-----HcC-----------CchHHHHHHHHHH
Q 038673 365 IAANHLFELEPDKIGNYIILSNIYA-----SAG-----------MWDDVSRVRRLLK 405 (548)
Q Consensus 365 ~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~m~ 405 (548)
.+++++++..+... ++...+..-. ..| ....|..+|++..
T Consensus 528 ~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 528 ALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 99999999887665 6776665443 333 4556777777654
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=4.1e-09 Score=95.51 Aligned_cols=228 Identities=14% Similarity=0.045 Sum_probs=128.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 038673 21 TALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVK 100 (548)
Q Consensus 21 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 100 (548)
+-|..+|.+.|.+.+|.+.|+.-+.+ .|-+.||..|-++|.+....+.|..++.+-+.. ++.|+.......+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 34556666666666666666666553 455556666666666666666666666665554 35555555555556666
Q ss_pred cCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC
Q 038673 101 CGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180 (548)
Q Consensus 101 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 180 (548)
.++.++|.+++....+. ...++.+...+..+|.-.++++-|+.+|+++.+.|
T Consensus 303 m~~~~~a~~lYk~vlk~----------------------------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL----------------------------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHhHHHHHHHHHHHHhc----------------------------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 66666666665544321 11233444444455555566666666666666665
Q ss_pred CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC---ChhhhH
Q 038673 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR---NVFSYS 257 (548)
Q Consensus 181 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~ 257 (548)
+. +...|+.+.-+|.-.++++.+..-|.++...--.|.....+|..|.......|++..|.+.|+-.... +..++|
T Consensus 355 ~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealn 433 (478)
T KOG1129|consen 355 AQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALN 433 (478)
T ss_pred CC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHH
Confidence 33 44455555555555566666666665555444333234455666666666666666666666555432 234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 258 SMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 258 ~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
.|.-.-.+.|+.++|..++.....
T Consensus 434 NLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hHHHHHhhcCchHHHHHHHHHhhh
Confidence 555555566666666666665544
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7.1e-07 Score=83.82 Aligned_cols=259 Identities=12% Similarity=-0.042 Sum_probs=174.2
Q ss_pred CCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHH---HHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038673 117 RDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAM---VTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVIS 193 (548)
Q Consensus 117 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 193 (548)
.|+.....+...+...|+.++|+..|++...-|+.+...| .-.+.+.|+++....+...+.... +-....|..-+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 3566777888888888888888888887765544433332 334567788888777777775432 112222333333
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHH
Q 038673 194 ACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAH 270 (548)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 270 (548)
......+++.|..+-+..++.... +...+-.-...+...|+.++|.-.|+.... -+..+|..|+.+|...|...
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r---~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPR---NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcc---cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 344556778888888877776644 666666666777788888888888887652 36788889999999999988
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHH-HHHH-HcCCHHHHHHHHHhC-CCCCC-hhH
Q 038673 271 AAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMV-DLLG-RAGCLEEALKMVEKM-PVEPN-GGV 346 (548)
Q Consensus 271 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m-~~~p~-~~~ 346 (548)
+|.-+-+...+. +.-+.. +...+. ..+. ..---++|..++++- .++|+ ...
T Consensus 386 EA~~~An~~~~~-~~~sA~------------------------~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSAR------------------------SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred HHHHHHHHHHHH-hhcchh------------------------hhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 888777665542 111222 222221 1111 112236788888766 36777 344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 347 WGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 347 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
.+.+...|...|..+.++.++++.+...|+.. ..+.|+..+.....+++|++.|....
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55555778888888889999888888888765 78888888888888888888887654
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.06 E-value=9.8e-07 Score=87.35 Aligned_cols=360 Identities=14% Similarity=0.162 Sum_probs=239.3
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhcc----------------C------CcHHHHHHH
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV----------------L------DVSLGQQIH 75 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~----------------~------~~~~a~~~~ 75 (548)
..|++|..-|.+.|.+++|.++|++....= .+..-|..+..+|+.- + +++....-+
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 469999999999999999999999887642 2333355555544321 1 133344444
Q ss_pred HHHHHhCC----------CCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---C------CeehHHHHHHHHHhCCChH
Q 038673 76 AQTILLGG----------FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---R------DVVSWTELIVAYANNGDME 136 (548)
Q Consensus 76 ~~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~------~~~~~~~li~~~~~~g~~~ 136 (548)
+.++...+ .+.++..|..-+..+ .|+..+-..+|.+..+ | -...|..+...|-.+|+++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 44443321 234455555555544 3445555555554432 1 2246888999999999999
Q ss_pred HHHHHHccCCCCC-------hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC----------C-CH------hhHHHHH
Q 038673 137 SAGGLFNELPLKD-------KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE----------T-DY------VTLVGVI 192 (548)
Q Consensus 137 ~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------p-~~------~t~~~ll 192 (548)
.|..+|++..+-+ ..+|-.-...=.+..+++.|+++++......-. | -. ..|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 9999999876432 235666666667788899999988776432111 1 11 1233333
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCh-hhhHHHHHHHHh--
Q 038673 193 SACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ----RNV-FSYSSMILGFAM-- 265 (548)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~-- 265 (548)
..--..|-++..+.+|+.+++..+. ++.+.-.....+-...-++++.+++++-.. |++ ..|+.-+.-+.+
T Consensus 485 DleEs~gtfestk~vYdriidLria---TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIA---TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 4444567888999999999998877 565555566666777788999999998763 454 468877765554
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCC
Q 038673 266 -HGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEP 342 (548)
Q Consensus 266 -~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p 342 (548)
....+.|..+|++.++ |++|...-+. |-.....--+.|....|+.++++.. +++
T Consensus 562 gg~klEraRdLFEqaL~-~Cpp~~aKti----------------------yLlYA~lEEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD-GCPPEHAKTI----------------------YLLYAKLEEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred cCCCHHHHHHHHHHHHh-cCCHHHHHHH----------------------HHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence 2468999999999998 6777655432 3333344456688889999999885 344
Q ss_pred C--hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch--hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 343 N--GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG--NYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 343 ~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
. ...|+..|.-....=-+.....+++++++.-|++.. ...-.+.+-.+.|..+.|..++.--.+-
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 3 567888885444333366778899999998887543 3334566678889999999998765543
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6.9e-08 Score=94.06 Aligned_cols=276 Identities=14% Similarity=0.035 Sum_probs=123.9
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHH
Q 038673 85 TSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVT 158 (548)
Q Consensus 85 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~ 158 (548)
..++.+.-...+-+...+++.+..++++...+ .....+..-|.++...|+..+-..+=.++. +....+|-++..
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 34444444444444445555555555554443 222333333444444444443333333332 123445555555
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC
Q 038673 159 GYVQNAKPREAIEYFERMQYAGVETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS 237 (548)
Q Consensus 159 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~ 237 (548)
-|...|+..+|.+.|.+.... .|. ...|.....+++..|..++|...+..+-+.-..- .-+.. -+.--|.+.++
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~L--Ylgmey~~t~n 395 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSL--YLGMEYMRTNN 395 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHH--HHHHHHHHhcc
Confidence 555555555555555444321 111 1234444444555555555555554443321110 01111 12223444455
Q ss_pred HHHHHHHHhcCC---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHhhcCCccCCCCcCH
Q 038673 238 IDDAYRIFVGMK---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT--ETKPNGVTFIGVLTACSHVGLKCYGVSPST 312 (548)
Q Consensus 238 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~ 312 (548)
++.|.+.|.... ..|+...+-+.-.....+.+.+|..+|+..+.. .+.+... -..
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--------------------~w~ 455 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--------------------FWE 455 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc--------------------chh
Confidence 555555554443 124444444444444445555555555544421 0000000 122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VE-PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
.+++.|..+|.+.+.+++|+..+++.- .. .|..++.++.-.+...|+++.|...|.+.+.+.|++..+-..|.
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 344555556666666666666665542 22 24555555555566666666666666666666666654434333
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.03 E-value=5.5e-08 Score=97.35 Aligned_cols=233 Identities=16% Similarity=0.140 Sum_probs=145.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHC-----CC-CCChhh-HHHHHHHhhccCCcHHHHHHHHHHHHh-----CCCCCC-hh
Q 038673 23 LIRGYILQGHLKDSISLYCSMRRE-----GI-GPVSFT-LSALFKACTEVLDVSLGQQIHAQTILL-----GGFTSD-LY 89 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~~-~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~~~~~-~~ 89 (548)
+...|...|+++.|..++++..+. |. .|...+ .+.+...+...+++.+|..+|+.++.. |...|. ..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 556666666666666666665542 10 122211 222334445555566665555555442 111111 22
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChh-HHHHHHHHHHHCCC
Q 038673 90 VGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKV-AWTAMVTGYVQNAK 165 (548)
Q Consensus 90 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~-~~~~li~~~~~~g~ 165 (548)
+++.|..+|.+.|++++|... .+.|.+++.+.. .+.+. .++.++..+...++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~------------------------~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 340 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEY------------------------CERALEIYEKLLGASHPEVAAQLSELAAILQSMNE 340 (508)
T ss_pred HHHHHHHHHhccCChHHHHHH------------------------HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc
Confidence 444445555555555555555 233444444422 22222 46677778888899
Q ss_pred hhHHHHHHHHHHHC---CCCCCH----hhHHHHHHHHHccCChhHHHHHHHHHHHcC------CCCCChHhHHHHHHHHH
Q 038673 166 PREAIEYFERMQYA---GVETDY----VTLVGVISACAQLGVIKYANWVCEIAEGSG------FGPINNVVVGSALIDMY 232 (548)
Q Consensus 166 ~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~~~li~~y 232 (548)
+++|..+++...+. -..++. .+++.+...+...|++++|.++|+.++... ..+ ......+.|...|
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~-~~~~~l~~la~~~ 419 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY-GVGKPLNQLAEAY 419 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh-hhhHHHHHHHHHH
Confidence 99998888865431 123332 468888899999999999999998886431 122 3456677888899
Q ss_pred hcCCCHHHHHHHHhcCCC---------CCh-hhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 038673 233 SKCGSIDDAYRIFVGMKQ---------RNV-FSYSSMILGFAMHGRAHAAIQLFGDMV 280 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~---------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~ 280 (548)
.+.+++++|.++|.+... |++ .+|..|...|...|+++.|+++.+...
T Consensus 420 ~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 420 EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999988887541 333 578899999999999999999988775
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=4.8e-08 Score=93.54 Aligned_cols=212 Identities=14% Similarity=0.078 Sum_probs=146.8
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHH
Q 038673 164 AKPREAIEYFERMQYAG-VETD--YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~ 240 (548)
+..+.++.-+.++.... ..|+ ...|......+...|+.++|...|..+++..+. +..+|+.+...|...|++++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHH
Confidence 45667777777776532 2332 234666677788889999999999988887644 88899999999999999999
Q ss_pred HHHHHhcCCC--C-ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHH
Q 038673 241 AYRIFVGMKQ--R-NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYAC 317 (548)
Q Consensus 241 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~ 317 (548)
|...|++..+ | +..+|..+...+...|++++|++.|++..+ ..|+... ...
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~------------------------~~~ 170 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPY------------------------RAL 170 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHH------------------------HHH
Confidence 9999988864 3 456788888888889999999999999887 4454321 111
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHh-------hcCCCCchhHHHHHHHH
Q 038673 318 MVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLF-------ELEPDKIGNYIILSNIY 388 (548)
Q Consensus 318 li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~ 388 (548)
....+...+++++|.+.|++.. ..|+...| .+. ....|+...+ ..++.+. ++.|..+.+|..++..|
T Consensus 171 ~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~ 246 (296)
T PRK11189 171 WLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYY 246 (296)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 1122345678999999986542 23333222 222 2234444433 2344443 34556667899999999
Q ss_pred HHcCCchHHHHHHHHHHhCC
Q 038673 389 ASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 389 ~~~g~~~~a~~~~~~m~~~g 408 (548)
...|++++|...|++..+.+
T Consensus 247 ~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 247 LSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999887544
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.6e-07 Score=90.19 Aligned_cols=267 Identities=12% Similarity=0.016 Sum_probs=196.0
Q ss_pred CCeehHHHHHHHHHhCCChHHHHHHHccCCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038673 117 RDVVSWTELIVAYANNGDMESAGGLFNELPLKD---KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVIS 193 (548)
Q Consensus 117 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 193 (548)
.++.....-..-+...+++.+..++++...+.| ...+..-|.++...|+..+-..+=.+|++. .+-...+|-++..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 455555666777888999999999999887554 445666677889999988888887888875 3446678989888
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHH
Q 038673 194 ACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAH 270 (548)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 270 (548)
-|...|+.++|++++......... -...|-.+...|+-.|.-+.|...+....+ .....+--+---|.+.++.+
T Consensus 321 YYl~i~k~seARry~SKat~lD~~---fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT---FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc---ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 888889999999999988765533 667899999999999999999888776543 11122223344578889999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHH
Q 038673 271 AAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWG 348 (548)
Q Consensus 271 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~ 348 (548)
.|.+.|.+... +.|+......=+. +. ..++.....+ ..-+..|+...+... -++ -..+++
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elg-----------vv--ay~~~~y~~A---~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELG-----------VV--AYTYEEYPEA---LKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhh-----------he--eehHhhhHHH---HHHHHHHHHHhhhccccccchhHHHH
Confidence 99999998876 7777643211111 00 0111111111 122445555555553 122 245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 349 ALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 349 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
.|-.+|++.+.+++|+..+++.+.+.|.++.+|..++-+|.-.|+++.|.+.|.+..
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 777899999999999999999999999999999999999999999999999988764
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=7.3e-08 Score=83.71 Aligned_cols=163 Identities=15% Similarity=0.092 Sum_probs=140.0
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTAC 298 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 298 (548)
..+...|.-.|...|+...|.+-+++..+. +..+|..+...|-+.|+.+.|.+.|++..+ +.|+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~---------- 102 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNN---------- 102 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCc----------
Confidence 345666788899999999999999998864 346788899999999999999999999988 56663
Q ss_pred hhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038673 299 SHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELE 374 (548)
Q Consensus 299 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 374 (548)
-.+.|...--+|..|++++|...|++....|+ ..+|..+..+..+.|+.+.|...+++.++.+
T Consensus 103 -------------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 103 -------------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred -------------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 34577777788999999999999998753443 6788888888899999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 375 PDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 375 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
|+.+.....+.....+.|++-.|..+++....++.
T Consensus 170 p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 170 PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 99999999999999999999999999998887665
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=4.4e-07 Score=78.97 Aligned_cols=199 Identities=15% Similarity=0.046 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
+...+.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|+.+.+..+. +..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~---~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN---NGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---ccchhhhhhHH
Confidence 46667789999999999999999998863 334567888888899999999999999999988765 88999999999
Q ss_pred HhcCCCHHHHHHHHhcCCC-C----ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccC
Q 038673 232 YSKCGSIDDAYRIFVGMKQ-R----NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCY 306 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 306 (548)
+|..|++++|...|++... | -..+|..+.-+..+.|+.+.|.+.|++.++ ..|+
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~------------------- 171 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQ------------------- 171 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcC-------------------
Confidence 9999999999999998774 3 246788888888899999999999999988 3444
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 307 GVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 307 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
...+...+.....+.|++..|..+++... ..++..+....|..-...|+.+.+.+.-.++.+..|....
T Consensus 172 ----~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 172 ----FPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred ----CChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 23456678888889999999999998874 4577888878888889999999999998899989998763
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=2.5e-06 Score=86.39 Aligned_cols=362 Identities=12% Similarity=0.012 Sum_probs=222.9
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----
Q 038673 41 CSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---- 116 (548)
Q Consensus 41 ~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---- 116 (548)
.++....++.|...|..+.-+....|+++.+-+.|++.+..- -.....|+.+...|..+|.-..|..+++.-..
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 333334456677788888888888888888888888877643 45567788888888888888888888876543
Q ss_pred CCeehHHHHHH-HH-HhCCChHHHHHHHccCCC--------CChhHHHHHHHHHHHC-----------CChhHHHHHHHH
Q 038673 117 RDVVSWTELIV-AY-ANNGDMESAGGLFNELPL--------KDKVAWTAMVTGYVQN-----------AKPREAIEYFER 175 (548)
Q Consensus 117 ~~~~~~~~li~-~~-~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~ 175 (548)
|+..+--.++. .| -+.+..++++++-.+... .....|-.+.-+|... ....++++.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 33333333332 22 234556665555433321 1344555555555432 123467777777
Q ss_pred HHHCC-CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChh
Q 038673 176 MQYAG-VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVF 254 (548)
Q Consensus 176 m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 254 (548)
..+.+ -.|+..-|.++ -++..++++.|.+..++..+.+.. .+...|..|.-.+...+++.+|+.+.+........
T Consensus 470 av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~--~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRG--DSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 76643 34444444333 356677889999999888888655 58888888888888889999998888766531111
Q ss_pred hhH---HHHHHHHhcCCHHHHHHHHHHHHHc---------------------CC-----CC--CHhhHHHHHHHHh-hcC
Q 038673 255 SYS---SMILGFAMHGRAHAAIQLFGDMVKT---------------------ET-----KP--NGVTFIGVLTACS-HVG 302 (548)
Q Consensus 255 ~~~---~li~~~~~~g~~~~A~~l~~~m~~~---------------------g~-----~p--~~~t~~~ll~a~~-~~~ 302 (548)
.++ .-+..-...++.++|+.....+... |+ .| ...|+..+..-.. +..
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 111 1111111133344443332222110 00 01 0112222221111 100
Q ss_pred -------C-----------------------------------------ccCCCCc-CHHHHHHHHHHHHHcCCHHHHHH
Q 038673 303 -------L-----------------------------------------KCYGVSP-STDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 303 -------~-----------------------------------------~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
+ ...++.| ....|......+...|.+++|.+
T Consensus 626 ~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 626 SAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred hcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 0 1111111 22334444455666778888887
Q ss_pred HHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 334 MVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQI--AANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 334 ~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
.|...- +.|+ +.+..++-..+.+.|+...|.. ++..+.+++|.++..|..|+.++-+.|+.++|.+.|....+..
T Consensus 706 af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 706 AFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 776653 6777 6677888888999999888888 9999999999999999999999999999999999998876543
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=8.5e-07 Score=83.32 Aligned_cols=302 Identities=14% Similarity=0.037 Sum_probs=211.2
Q ss_pred CCChhhHHHHHHHhhc--cCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHH--
Q 038673 49 GPVSFTLSALFKACTE--VLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTE-- 124 (548)
Q Consensus 49 ~p~~~~~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-- 124 (548)
+|+..+....+.+++. .++-..+.+.+-.+.....++.|+....++.++|...|+.+.|...|++..--|+.+...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3444444455555443 344444444444444433378899999999999999999999999999876544433322
Q ss_pred -HHHHHHhCCChHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 038673 125 -LIVAYANNGDMESAGGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGV 200 (548)
Q Consensus 125 -li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 200 (548)
..-.+.+.|+++....+...+-.. ....|-.-....-..++++.|+.+-++-.+.. +-+...|..-..++...++
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence 233456788888877776655433 34456555566667788999999988877643 2234455555566788899
Q ss_pred hhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC---CCChhhhHHHH-HHH-HhcCCHHHHHHH
Q 038673 201 IKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK---QRNVFSYSSMI-LGF-AMHGRAHAAIQL 275 (548)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li-~~~-~~~g~~~~A~~l 275 (548)
.++|.-.|+.+.... | .+...|.-|+..|...|++.+|.-.-+... ..+..+.+.+- ..+ -...--++|.++
T Consensus 350 ~~~A~IaFR~Aq~La--p-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLA--P-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred hHHHHHHHHHHHhcc--h-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 999999999887765 4 599999999999999999999876544322 12222222221 111 112234677777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCChhHHHHHHHHH
Q 038673 276 FGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPNGGVWGALLGAC 354 (548)
Q Consensus 276 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~ 354 (548)
++.-.. +.|+-. ...+.+...+...|..+++..++++.- ..||....+.|-..+
T Consensus 427 ~ek~L~--~~P~Y~-----------------------~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 427 AEKSLK--INPIYT-----------------------PAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIM 481 (564)
T ss_pred HHhhhc--cCCccH-----------------------HHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHH
Confidence 776655 455522 345667788899999999999998874 679999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 355 QIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
+..+.+++|...|..++.++|++..
T Consensus 482 ~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHhhhHHHHHHHHHHHHhcCccchH
Confidence 9999999999999999999999763
No 74
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=7.5e-08 Score=90.94 Aligned_cols=248 Identities=10% Similarity=0.024 Sum_probs=161.7
Q ss_pred HHhCCChHHHHHHHc--cCCCC-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHH
Q 038673 129 YANNGDMESAGGLFN--ELPLK-DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYAN 205 (548)
Q Consensus 129 ~~~~g~~~~A~~~f~--~m~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 205 (548)
+.-.|++..++.-.+ ...+. +.....-+.++|...|+++.++. +..... .|.......+...+....+-+.+.
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 444567776664443 11111 23455667788888898776553 333333 566555555544444333444443
Q ss_pred HHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038673 206 WVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK 285 (548)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 285 (548)
.-++........+ .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +.
T Consensus 87 ~~l~~~~~~~~~~-~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~ 161 (290)
T PF04733_consen 87 EELKELLADQAGE-SNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--ID 161 (290)
T ss_dssp HHHHHCCCTS----CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHhcccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 3333322222221 24555555667888899999999998876 5666777788899999999999999999987 34
Q ss_pred CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHH
Q 038673 286 PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIA 363 (548)
Q Consensus 286 p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a 363 (548)
.|.. ...+ ..+.+..+.-.+.+.+|.-+|+++. ..+++.+.+.+..+....|++++|
T Consensus 162 eD~~-l~qL--------------------a~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 162 EDSI-LTQL--------------------AEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp CCHH-HHHH--------------------HHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred CcHH-HHHH--------------------HHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4432 2222 2233344433457899999999985 456788888888999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHcCCc-hHHHHHHHHHHh
Q 038673 364 QIAANHLFELEPDKIGNYIILSNIYASAGMW-DDVSRVRRLLKM 406 (548)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 406 (548)
+.++++.++.+|.++.+...++.+..-.|+. +.+.+++.+++.
T Consensus 221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 9999999999999999999999988888988 667788887764
No 75
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.3e-06 Score=83.94 Aligned_cols=223 Identities=11% Similarity=0.009 Sum_probs=170.3
Q ss_pred HhCCChHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHH
Q 038673 130 ANNGDMESAGGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANW 206 (548)
Q Consensus 130 ~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 206 (548)
.-.|+.-.|.+.|+....- +...|--+...|++..+.++....|++..+.+ +-|..+|..-.....-++++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 4557777777777776532 33347778889999999999999999998764 3356677777777777789999999
Q ss_pred HHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038673 207 VCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--R-NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTE 283 (548)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 283 (548)
=|+..+...++ +...|-.+.-+.-|.++++++...|++..+ | -+..||-....+..++++++|++.|+..++
T Consensus 416 DF~Kai~L~pe---~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 416 DFQKAISLDPE---NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHhhcChh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 99999887755 899999999999999999999999999885 3 457899999999999999999999999987
Q ss_pred CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHH
Q 038673 284 TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPE 361 (548)
Q Consensus 284 ~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~ 361 (548)
+.|+..-. -+.+.+.+--.++.. .-.+++.+|.+++++.- +.|. ...+.+|-..-.+.|+.+
T Consensus 491 LE~~~~~~---------------~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 491 LEPREHLI---------------IVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKID 554 (606)
T ss_pred hccccccc---------------cccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHH
Confidence 45553210 001111111122211 23489999999999874 5554 667888889999999999
Q ss_pred HHHHHHHHHhhcC
Q 038673 362 IAQIAANHLFELE 374 (548)
Q Consensus 362 ~a~~~~~~~~~~~ 374 (548)
+|+++|++...+-
T Consensus 555 eAielFEksa~lA 567 (606)
T KOG0547|consen 555 EAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877643
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.90 E-value=2.8e-06 Score=86.31 Aligned_cols=291 Identities=11% Similarity=-0.012 Sum_probs=196.9
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC-
Q 038673 25 RGYILQGHLKDSISLYCSMRREGIGPVS-FTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCG- 102 (548)
Q Consensus 25 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 102 (548)
..+...|++++|++.++.-... -+|. ..+......+.+.|+.++|..++..+++.+ |.|..-|..|..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 4467889999999999875543 3454 445666777899999999999999999987 777777788877773332
Q ss_pred ----ChHHHHHHHccCCC--CCeehHHHHHHHHHhCCChH-HHHHHHccCCCCC-hhHHHHHHHHHHHCCChhHHHHHHH
Q 038673 103 ----FLGCSRKVFDEMPE--RDVVSWTELIVAYANNGDME-SAGGLFNELPLKD-KVAWTAMVTGYVQNAKPREAIEYFE 174 (548)
Q Consensus 103 ----~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~-~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~l~~ 174 (548)
+.+....+|+++.+ |...+...+.-.+.....+. .+...+..+..+. +.+++.+-..|....+..-..+++.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 56777788887754 32222222222222211222 2222333333444 3567777777776665555566666
Q ss_pred HHHHC----C----------CCCCH--hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCH
Q 038673 175 RMQYA----G----------VETDY--VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSI 238 (548)
Q Consensus 175 ~m~~~----g----------~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~ 238 (548)
..... + -+|.. .++.-+...+...|+.++|.++.+..++..+. .+..|..-...|-..|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt---~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT---LVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHCCCH
Confidence 65432 1 12333 24455666788999999999999999998744 789999999999999999
Q ss_pred HHHHHHHhcCCCCC---hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHH
Q 038673 239 DDAYRIFVGMKQRN---VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHY 315 (548)
Q Consensus 239 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~ 315 (548)
++|.+.++....-| -..=+-.+..+.+.|+.++|.+++......+..|-...+ -+.+ .--.
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~--~mQc--------------~Wf~ 308 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN--DMQC--------------MWFE 308 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH--HHHH--------------HHHH
Confidence 99999999887644 345555677888999999999999988776653332211 0000 0012
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC
Q 038673 316 ACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 316 ~~li~~~~~~g~~~~A~~~~~~m 338 (548)
.....+|.+.|++..|++.|..+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 34567889999999998877665
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.89 E-value=1.3e-05 Score=81.51 Aligned_cols=389 Identities=13% Similarity=0.094 Sum_probs=231.9
Q ss_pred CcchHHHhccCCC--CCcch-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhh----c--cCCcHHHH
Q 038673 2 DSFPRLVFEQVKY--KNPFL-WTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT----E--VLDVSLGQ 72 (548)
Q Consensus 2 ~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~----~--~~~~~~a~ 72 (548)
.+.|.+.++.-.. .|..+ .......+.+.|+.++|..+|..++..+ |+...|...+..+. . ..+.+...
T Consensus 20 ~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 20 YEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred HHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 4566677655432 34444 4556677889999999999999999964 77777766666554 1 22467778
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHHcCCh-HHHHHHHccCCCCCe-ehHHHHHHHHHhCCChHHHHHHHccC-----
Q 038673 73 QIHAQTILLGGFTSDLYVGNTMIGMYVKCGFL-GCSRKVFDEMPERDV-VSWTELIVAYANNGDMESAGGLFNEL----- 145 (548)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m----- 145 (548)
++++.+...- +.....-..-+.. ..-..+ ..+...+..+..+.+ .+++.+-..|....+.+-..+++...
T Consensus 98 ~~y~~l~~~y--p~s~~~~rl~L~~-~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~ 174 (517)
T PF12569_consen 98 ELYDELAEKY--PRSDAPRRLPLDF-LEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLE 174 (517)
T ss_pred HHHHHHHHhC--ccccchhHhhccc-CCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhc
Confidence 8888776542 2211111111111 110111 122233333333333 34555555555444444333443332
Q ss_pred -------------CCCChh--HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCChhHHHHHHH
Q 038673 146 -------------PLKDKV--AWTAMVTGYVQNAKPREAIEYFERMQYAGVETD-YVTLVGVISACAQLGVIKYANWVCE 209 (548)
Q Consensus 146 -------------~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 209 (548)
..|... ++.-+...|-..|++++|+.++++.... .|+ ...|..-...+-+.|++.+|.+..+
T Consensus 175 ~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~ 252 (517)
T PF12569_consen 175 SNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMD 252 (517)
T ss_pred ccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 122333 3455677888999999999999988875 455 4567778888999999999999999
Q ss_pred HHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCCh----------hhh--HHHHHHHHhcCCHHHHHHHHH
Q 038673 210 IAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNV----------FSY--SSMILGFAMHGRAHAAIQLFG 277 (548)
Q Consensus 210 ~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~l~~ 277 (548)
.+...... |..+-+-.+..+.++|++++|.+++....+++. ..| .....+|.+.|++..|++.|.
T Consensus 253 ~Ar~LD~~---DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 253 EARELDLA---DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HHHhCChh---hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99988876 999999999999999999999999888776542 133 234567889999999988777
Q ss_pred HHHHc--CC-------------CCCHhhHHHHHHHHhhcCC-----------------------ccCCC-------CcCH
Q 038673 278 DMVKT--ET-------------KPNGVTFIGVLTACSHVGL-----------------------KCYGV-------SPST 312 (548)
Q Consensus 278 ~m~~~--g~-------------~p~~~t~~~ll~a~~~~~~-----------------------~~~~~-------~p~~ 312 (548)
...+. .+ +.+..+|..+|...-+... ...+- ..+.
T Consensus 330 ~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~ 409 (517)
T PF12569_consen 330 AVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSA 409 (517)
T ss_pred HHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCCh
Confidence 66543 11 1223334444433322211 00000 0011
Q ss_pred HHHHHHHHHH---HHcCCHHHHHHHH-H----------hC----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038673 313 DHYACMVDLL---GRAGCLEEALKMV-E----------KM----PVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELE 374 (548)
Q Consensus 313 ~~~~~li~~~---~~~g~~~~A~~~~-~----------~m----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 374 (548)
.--..+-.-. .+...-+++...- + +. +.+.|......-+ .....-.+.|.++++-+.+..
T Consensus 410 ~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL--~~t~dPLe~A~kfl~pL~~~a 487 (517)
T PF12569_consen 410 AERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKL--LKTEDPLEEAMKFLKPLLELA 487 (517)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHH--hcCCcHHHHHHHHHHHHHHhC
Confidence 1001111000 1111111111111 0 00 1222322222222 123345689999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHH
Q 038673 375 PDKIGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 375 p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
|++..+|..-...|.+.|++--|.+.+.
T Consensus 488 ~~~~et~~laFeVy~Rk~K~LLaLqaL~ 515 (517)
T PF12569_consen 488 PDNIETHLLAFEVYLRKGKYLLALQALK 515 (517)
T ss_pred ccchhhHHHHhHHHHhcCcHHHHHHHHH
Confidence 9999999999999999999999888765
No 78
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.88 E-value=1.2e-05 Score=79.84 Aligned_cols=356 Identities=15% Similarity=0.184 Sum_probs=180.8
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCC-----CCCCh----
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGG-----FTSDL---- 88 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-----~~~~~---- 88 (548)
..|...+......|-++-++.++++.++ +.|. .-.--+..+...+++++|.+.++..+.... -+.+-
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~--~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLK--VAPE--AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHh--cCHH--HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 4688888877788888888888888776 3343 345555566667777777766665543210 12233
Q ss_pred ----------------------------------hHHHHHHHHHHHcCChHHHHHHHccCCC--CCeehHHHHHHHHHhC
Q 038673 89 ----------------------------------YVGNTMIGMYVKCGFLGCSRKVFDEMPE--RDVVSWTELIVAYANN 132 (548)
Q Consensus 89 ----------------------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 132 (548)
..|++|.+-|.+.|.++.|+++|++..+ -++.-|+.+-+.|++-
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHH
Confidence 3455555555555555555555555433 1222222222222211
Q ss_pred C----------------C------hHHHHHHHccCCC---------------CChhHHHHHHHHHHHCCChhHHHHHHHH
Q 038673 133 G----------------D------MESAGGLFNELPL---------------KDKVAWTAMVTGYVQNAKPREAIEYFER 175 (548)
Q Consensus 133 g----------------~------~~~A~~~f~~m~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~ 175 (548)
. + ++-...-|+.+.. .++..|..-+. ...|+..+-...|.+
T Consensus 295 EE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyte 372 (835)
T KOG2047|consen 295 EESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTE 372 (835)
T ss_pred HHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHH
Confidence 0 0 1111111221110 12222222222 123444444555555
Q ss_pred HHHCCCCCC------HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-ChHhHHHHHHHHHhcCCCHHHHHHHHhcC
Q 038673 176 MQYAGVETD------YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPI-NNVVVGSALIDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 176 m~~~g~~p~------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 248 (548)
..+. +.|- ...+..+...|-+.|+++.|..+|++..+....-. .-..+|..-..+=.+..+++.|.++.++.
T Consensus 373 Av~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 373 AVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 4432 2221 11244455555555666666666655555443310 01244444445555555555555555544
Q ss_pred CC---------------------CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 249 KQ---------------------RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 249 ~~---------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
.. ++...|...+..--..|-++....+|+++++..+...
T Consensus 452 ~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP-------------------- 511 (835)
T KOG2047|consen 452 THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP-------------------- 511 (835)
T ss_pred hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH--------------------
Confidence 31 0122344444444444444555555555544322111
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CC-CC-hhHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCc--
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VE-PN-GGVWGALLGACQI---HRNPEIAQIAANHLFELEPDKI-- 378 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~-p~-~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~-- 378 (548)
..-......+-...-++++.+++++-- ++ |+ ...|++.+.-+.+ ...+|.|..+|+++++.-|+..
T Consensus 512 -----qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aK 586 (835)
T KOG2047|consen 512 -----QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAK 586 (835)
T ss_pred -----HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 111112223445667899999998763 33 55 5688888854432 3468999999999999877532
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 379 GNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 379 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
..|...+..-.+-|....|+.++++.-
T Consensus 587 tiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 587 TIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 244444444556677778888887753
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.88 E-value=7.8e-06 Score=81.36 Aligned_cols=386 Identities=10% Similarity=0.048 Sum_probs=213.3
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
...|..++..| ..+++...+++.+.+... .+-...|.....-.+...|+.++|.......++.. ..+.+.|..+.-
T Consensus 8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl 83 (700)
T KOG1156|consen 8 NALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHH
Confidence 34455555554 335666666666666652 22233344333333445566666666666555543 445555665555
Q ss_pred HHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccC---CCCChhHHHHHHHHHHHCCChhHHH
Q 038673 97 MYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNEL---PLKDKVAWTAMVTGYVQNAKPREAI 170 (548)
Q Consensus 97 ~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~ 170 (548)
.+-...++++|.+.|..... | |...|.-+.-.-.+.|+++.....-... .......|.....++.-.|++..|.
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555667777777765442 2 3334444333334444444444332222 2234456666666666667777777
Q ss_pred HHHHHHHHCC-CCCCHhhHHHHHH------HHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHH
Q 038673 171 EYFERMQYAG-VETDYVTLVGVIS------ACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243 (548)
Q Consensus 171 ~l~~~m~~~g-~~p~~~t~~~ll~------~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~ 243 (548)
.++++..+.. -.|+...|..... .....|.++.|.+.+..-...-+. ....--.-.+.+.+.+++++|..
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D---kla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD---KLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH---HHHHhhhHHHHHHHHhhHHhHHH
Confidence 7666665543 2344444432221 223445555555554443332222 33334445556666666666666
Q ss_pred HHhcCCC--CChhhhHHHH-HHHHhc----------------------------------CC-HHHHHHHHHHHHHcCCC
Q 038673 244 IFVGMKQ--RNVFSYSSMI-LGFAMH----------------------------------GR-AHAAIQLFGDMVKTETK 285 (548)
Q Consensus 244 ~~~~~~~--~~~~~~~~li-~~~~~~----------------------------------g~-~~~A~~l~~~m~~~g~~ 285 (548)
++..+.. ||..-|.-.. .++... .+ .+..-+.+..+.+.|++
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 6666654 2222222221 122111 11 22233345556666666
Q ss_pred CCHhhHHHHHH-------------HHhh----cCC-----ccCCCCcCHHHHH--HHHHHHHHcCCHHHHHHHHHhCC-C
Q 038673 286 PNGVTFIGVLT-------------ACSH----VGL-----KCYGVSPSTDHYA--CMVDLLGRAGCLEEALKMVEKMP-V 340 (548)
Q Consensus 286 p~~~t~~~ll~-------------a~~~----~~~-----~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~-~ 340 (548)
|-...+.++.. .+.+ .|+ ....-+|....|. .++..+-+.|+++.|+..++..- -
T Consensus 321 ~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 321 SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 54433333221 1211 111 1112255655554 57788899999999999998774 4
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 341 EPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 341 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
.|+ +..|-.-.+.+...|+++.|...+++..+++-.|...-.--+.-..++.+.++|.++....-+.|.
T Consensus 401 TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 401 TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 566 334444447788899999999999999998877663333566677889999999999988877765
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.84 E-value=1.1e-06 Score=84.20 Aligned_cols=206 Identities=7% Similarity=-0.160 Sum_probs=135.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
...|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|+++.|...++.+.+..+. +..++..+.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg 139 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAYLNRG 139 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Confidence 3457777778888888888888888887753 335667888888888888899888888888876644 677888888
Q ss_pred HHHhcCCCHHHHHHHHhcCCCCCh--hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQRNV--FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
..|...|++++|.+.|+...+.++ .........+...++.++|+..|.+.... ..|+..
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~------------------ 200 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQW------------------ 200 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCcccc------------------
Confidence 888888999999888888764322 11111122234567888999988765532 222211
Q ss_pred CCcCHHHHHHHHHHHHHcCCHH--HHHHHHHh-CC----CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-c
Q 038673 308 VSPSTDHYACMVDLLGRAGCLE--EALKMVEK-MP----VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDK-I 378 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~-m~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-~ 378 (548)
...++..+ .|+.. ++.+.+.+ .. ..| ....|..+...+...|++++|...|+++++.+|.+ +
T Consensus 201 -------~~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 201 -------GWNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred -------HHHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 11122222 33332 23322221 11 112 24578888899999999999999999999999754 4
Q ss_pred hhHHHHHHH
Q 038673 379 GNYIILSNI 387 (548)
Q Consensus 379 ~~~~~l~~~ 387 (548)
..-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333334433
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=5.8e-06 Score=76.30 Aligned_cols=183 Identities=10% Similarity=0.042 Sum_probs=98.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHH-HHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 038673 24 IRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALF-KACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCG 102 (548)
Q Consensus 24 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 102 (548)
+.-+..+.++..|+.+++--..-+-.- .......| ..+-+.|++++|...+..+.... .++...+-.|..++.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EE-E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREE-EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHH
Confidence 455667788888988887665433221 12333333 44568899999999999888765 677777777887777788
Q ss_pred ChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC
Q 038673 103 FLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE 182 (548)
Q Consensus 103 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 182 (548)
.+.+|..+-...++ ++..-..|.+.--+.|+-++-..+-+.+.... .---++.+..-..-.+++|+++|.+.... .
T Consensus 106 ~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n 181 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--N 181 (557)
T ss_pred HHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 89999888666543 11222233333344455444444333332211 11112222222223455666666655543 2
Q ss_pred CCHhhHHHHHH-HHHccCChhHHHHHHHHHHH
Q 038673 183 TDYVTLVGVIS-ACAQLGVIKYANWVCEIAEG 213 (548)
Q Consensus 183 p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~ 213 (548)
|+-...+.-+. +|.+..-++-+.++++--.+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 33333333222 23444444445555444433
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2.5e-05 Score=77.03 Aligned_cols=356 Identities=10% Similarity=0.017 Sum_probs=190.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 038673 24 IRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGF 103 (548)
Q Consensus 24 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 103 (548)
+.-+.++|++++|++.-.++...+ +-|...+..-+-+..+.+.++.|..+.+.- +....+...+..=.-+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN---GALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---chhhhcchhhHHHHHHHHHccc
Confidence 344566788889999888888754 335566777777777888888887543321 1011111111112223346677
Q ss_pred hHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCC-------------------------------ChhH
Q 038673 104 LGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLK-------------------------------DKVA 152 (548)
Q Consensus 104 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------------------------------~~~~ 152 (548)
.++|...++...+-+..+...-...+.+.|++++|..+++.+.+. ...+
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS 174 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence 777777777555545445555566677777777777776665210 1112
Q ss_pred HHH---HHHHHHHCCChhHHHHHHHHHHHCC-------------CCCCHhhH-HHHHHHHHccCChhHHHHHHHHHHHcC
Q 038673 153 WTA---MVTGYVQNAKPREAIEYFERMQYAG-------------VETDYVTL-VGVISACAQLGVIKYANWVCEIAEGSG 215 (548)
Q Consensus 153 ~~~---li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~ 215 (548)
|.. ....++..|++.+|+++++...+.+ +.-+..+. .-+.-++...|+-++|..++...++..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 332 2345567788888888877762211 00011111 123334556778888888777777665
Q ss_pred CCCC-ChHhHHHHHHHHHhc---------------------------------------------CCCHHHHHHHHhcCC
Q 038673 216 FGPI-NNVVVGSALIDMYSK---------------------------------------------CGSIDDAYRIFVGMK 249 (548)
Q Consensus 216 ~~p~-~~~~~~~~li~~y~~---------------------------------------------~g~~~~A~~~~~~~~ 249 (548)
.... .-...-|.|+.+-.. .+..+.+.++-...+
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 4310 001111222211110 011122222222221
Q ss_pred C--C------------------------------------ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 038673 250 Q--R------------------------------------NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTF 291 (548)
Q Consensus 250 ~--~------------------------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 291 (548)
. | ..+.--.++......|+++.|++++...... +
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~--------~ 406 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES--------W 406 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--------h
Confidence 1 1 1112223333344455555555555422110 0
Q ss_pred HHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-hhHHHHHHHHHHhcCCHHH
Q 038673 292 IGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM--------PVEPN-GGVWGALLGACQIHRNPEI 362 (548)
Q Consensus 292 ~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~ 362 (548)
.+ .-..+...+.+-..++.++.+.++-+-|-.++.+. ..++. ..+|.-+...-.++|+.++
T Consensus 407 ~s----------s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 407 KS----------SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred hh----------hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 00 00112223445566777787777766566555543 12222 2334444445567899999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 038673 363 AQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 363 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
|...++++.+.+|++..+...++.+|++. +.+.|..+-+
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 99999999999999999999999999976 5566666544
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.74 E-value=2.4e-06 Score=85.64 Aligned_cols=189 Identities=16% Similarity=0.239 Sum_probs=118.9
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCC
Q 038673 157 VTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 157 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g 236 (548)
|.+......|.+|+.+++.++.... -..-|..+..-|++.|+++.|.++|-+ ...++-.|+||.+.|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e-----------~~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTE-----------ADLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHh-----------cchhHHHHHHHhccc
Confidence 3445667788888888888776542 223466677788899999999888743 234566788999999
Q ss_pred CHHHHHHHHhcCCCC--ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHH
Q 038673 237 SIDDAYRIFVGMKQR--NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDH 314 (548)
Q Consensus 237 ~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~ 314 (548)
+|++|.++-.+...| .+..|-+-..-+-.+|++.+|.++|-.... |+.
T Consensus 806 kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-------------------------- 855 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-------------------------- 855 (1636)
T ss_pred cHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH--------------------------
Confidence 999999888877654 345566666667778888888877754322 331
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMPVEPN--GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAG 392 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 392 (548)
-|.+|-+.|..++.+++.++-. |+ ..|-..+..-+-..|+...|+.-|-+.- -|..-.++|-..+
T Consensus 856 ---aiqmydk~~~~ddmirlv~k~h--~d~l~dt~~~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 856 ---AIQMYDKHGLDDDMIRLVEKHH--GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASE 922 (1636)
T ss_pred ---HHHHHHhhCcchHHHHHHHHhC--hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhh
Confidence 2455666666666666665542 33 2334444445555566665555444322 3344455555555
Q ss_pred CchHHHHHH
Q 038673 393 MWDDVSRVR 401 (548)
Q Consensus 393 ~~~~a~~~~ 401 (548)
.|++|.++-
T Consensus 923 lw~dayria 931 (1636)
T KOG3616|consen 923 LWEDAYRIA 931 (1636)
T ss_pred hHHHHHHHH
Confidence 555555543
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=0.00012 Score=72.54 Aligned_cols=338 Identities=10% Similarity=0.036 Sum_probs=199.3
Q ss_pred HHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHH--HhCCCh
Q 038673 58 LFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAY--ANNGDM 135 (548)
Q Consensus 58 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~--~~~g~~ 135 (548)
=++-+...+++++|.+....++..+ +.|...+..=+-+..+.+.+++|+++.+.-..-.....-.+=.+| .+.++.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 3455677889999999999999875 667777777777888999999999776654431111111134444 578999
Q ss_pred HHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038673 136 ESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY-VTLVGVISACAQLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 136 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 214 (548)
++|+..++.....|..+...-...+-+.|++++|+++|+.+.+.+.+--. ..-..++.+-.. ..+. .+...
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~----~~q~v 167 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ----LLQSV 167 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----HHHhc
Confidence 99999999666556556666667788999999999999999877533211 111222222111 0111 12222
Q ss_pred CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC--------CCC-----hh-----hhHHHHHHHHhcCCHHHHHHHH
Q 038673 215 GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK--------QRN-----VF-----SYSSMILGFAMHGRAHAAIQLF 276 (548)
Q Consensus 215 ~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~~l~ 276 (548)
...|..+-..+......+...|++.+|+++++... ..| +. .---|.-.+-..|+..+|..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 23331233344445566777888888888887762 111 11 1112333455678888888888
Q ss_pred HHHHHcCCCCCHhhHHHHH---HHHhhcC------------------------------------------------C--
Q 038673 277 GDMVKTETKPNGVTFIGVL---TACSHVG------------------------------------------------L-- 303 (548)
Q Consensus 277 ~~m~~~g~~p~~~t~~~ll---~a~~~~~------------------------------------------------~-- 303 (548)
...++.. .+|........ -+..... .
T Consensus 248 ~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 248 VDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 8777652 23321111110 0110000 0
Q ss_pred ----------------------------------------ccCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHH------
Q 038673 304 ----------------------------------------KCYGVSP-STDHYACMVDLLGRAGCLEEALKMVE------ 336 (548)
Q Consensus 304 ----------------------------------------~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~------ 336 (548)
...+.+- ...+.-.++......|+++.|.+++.
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~ 406 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW 406 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 0001111 12344455666777888888888887
Q ss_pred --hCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCC---CchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 337 --KMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE----LEPD---KIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 337 --~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.++ +.-.+.+..+++..+.+.++.+.|..++...+. ..+. ....+..++..-.+.|+-++|..+++++.+
T Consensus 407 ~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 407 KSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 333 333355566666777777777777777776665 1121 122444455556677899999999888876
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=2.4e-05 Score=70.63 Aligned_cols=287 Identities=14% Similarity=0.095 Sum_probs=195.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHH-HHHHH
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGN-TMIGM 97 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~ 97 (548)
+++.+..+.+..+++.|++++..-.+. .| +...++.+...|-...++..|-..++++-+. .|...-|. --...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHH
Confidence 677788888999999999999988875 35 6677888888888999999999999998764 34433332 22344
Q ss_pred HHHcCChHHHHHHHccCCCC-CeehHHHHH--HHHHhCCChHHHHHHHccCC-CCChhHHHHHHHHHHHCCChhHHHHHH
Q 038673 98 YVKCGFLGCSRKVFDEMPER-DVVSWTELI--VAYANNGDMESAGGLFNELP-LKDKVAWTAMVTGYVQNAKPREAIEYF 173 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~~-~~~~~~~li--~~~~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~ 173 (548)
+.+.+.+.+|+++...|.+. +...-..-+ ......+++..+..+.++.+ +.+..+.+.......+.|++++|++-|
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 55778899999999888763 322211112 23456789999999999998 467778888888888999999999999
Q ss_pred HHHHHC-CCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-----------------CCh---------HhHHH
Q 038673 174 ERMQYA-GVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGP-----------------INN---------VVVGS 226 (548)
Q Consensus 174 ~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p-----------------~~~---------~~~~~ 226 (548)
+...+- |..| ...|+..+.- .+.++...|.+...++++.|+.. ..+ +..+|
T Consensus 168 qaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 988774 4544 4567665544 45688999999999998877541 001 11223
Q ss_pred HHHHHHhcCCCHHHHHHHHhcCCC-----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhc
Q 038673 227 ALIDMYSKCGSIDDAYRIFVGMKQ-----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301 (548)
Q Consensus 227 ~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 301 (548)
.-...+.+.|+++.|.+.+-.|+. -|++|...+.-.- ..+++.+..+-+.-+... .|-
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPf-------------- 308 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPF-------------- 308 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCC--------------
Confidence 333456678889999999888884 3666655443221 234444444444444432 221
Q ss_pred CCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 302 GLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 302 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
..+|+..++-.||+..-++-|-+++.+-+
T Consensus 309 ---------P~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 309 ---------PPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred ---------ChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 23456666677777777777777776543
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.69 E-value=2.7e-05 Score=77.24 Aligned_cols=197 Identities=10% Similarity=0.001 Sum_probs=117.4
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC-----Ch--hhhHHHHH
Q 038673 189 VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR-----NV--FSYSSMIL 261 (548)
Q Consensus 189 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~ 261 (548)
..+...+...|++++|.+.++...+..+. +...+..+...|...|++++|...+++..+. +. ..|..+..
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 34455667778888888888888776644 6677777888888888888888888776531 21 23456777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCC------HHHHHHHH
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGC------LEEALKMV 335 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~ 335 (548)
.+...|+.++|+.++++.... .|.......+. ....++..+...|. ++++....
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~--~~~~~~~~~~~------------------~~~~~l~~~~~~g~~~~~~~w~~~~~~~ 254 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAP--SAESDPALDLL------------------DAASLLWRLELAGHVDVGDRWEDLADYA 254 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--ccCCChHHHHh------------------hHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 788888888888888887542 22111110000 00011222222332 22222221
Q ss_pred HhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-C---C-----CchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 336 EKM-PVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELE-P---D-----KIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 336 ~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
... +.............++...|+.+.|...++.+.... . . ........+.++...|++++|.+.+....
T Consensus 255 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 255 AWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 110111222245567788889999999998877622 1 1 23345566677889999999999998876
Q ss_pred hCC
Q 038673 406 MTG 408 (548)
Q Consensus 406 ~~g 408 (548)
..+
T Consensus 335 ~~a 337 (355)
T cd05804 335 DDL 337 (355)
T ss_pred HHH
Confidence 544
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=5.3e-07 Score=88.42 Aligned_cols=206 Identities=13% Similarity=0.098 Sum_probs=138.8
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHH
Q 038673 197 QLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAI 273 (548)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 273 (548)
+.|++..|.-.|+..++..+. +...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred hcCCchHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 445555555555555555533 555555555555555555555555555443 23334444444555555555555
Q ss_pred HHHHHHHHcC-------------------CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 038673 274 QLFGDMVKTE-------------------TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKM 334 (548)
Q Consensus 274 ~l~~~m~~~g-------------------~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 334 (548)
..++.-+... -.++...+..+..-+.... ...+.++|+.++..|.-+|--.|.+++|.+.
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa-~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAA-RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHH-HhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 5555543321 0122222322222222221 1223357788899999999999999999999
Q ss_pred HHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 335 VEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 335 ~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
|+..- ++|+ ...||-|-..++...+.++|+.+|.+++++.|....+...|+-.|...|.+++|.+.|-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99874 7786 788999999999999999999999999999999999999999999999999999998766543
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.65 E-value=0.00012 Score=72.66 Aligned_cols=303 Identities=11% Similarity=-0.010 Sum_probs=183.7
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCChhh-HHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHH-
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGI-GPVSFT-LSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNT- 93 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~- 93 (548)
...|..+...+...|+++++...+....+... .++... .......+...|+++.+..+++..++.. |.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHh
Confidence 34567777777788888888777777665321 122211 1122233567799999999999998874 556555552
Q ss_pred --HHHHHHHcCChHHHHHHHccCCCCCe---ehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCC
Q 038673 94 --MIGMYVKCGFLGCSRKVFDEMPERDV---VSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAK 165 (548)
Q Consensus 94 --li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~ 165 (548)
+.......+..+.+.+.++.....+. .....+...+...|++++|...+++.. +.+...+..+...|...|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 22222335666777777765333222 233345568889999999999998875 3356778888999999999
Q ss_pred hhHHHHHHHHHHHCCC-CCCH--hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHH-H--HHHHHHhcCCCHH
Q 038673 166 PREAIEYFERMQYAGV-ETDY--VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVG-S--ALIDMYSKCGSID 239 (548)
Q Consensus 166 ~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-~--~li~~y~~~g~~~ 239 (548)
+++|..++++.....- .|+. ..+..+...+...|+.++|..+++.+......+ ...... + .++.-+...|..+
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAES-DPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCC-ChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999998876431 2332 235567778899999999999999986544311 122211 1 3334444444322
Q ss_pred HHHHH---Hhc---CCCCChhhhH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcC
Q 038673 240 DAYRI---FVG---MKQRNVFSYS--SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPS 311 (548)
Q Consensus 240 ~A~~~---~~~---~~~~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~ 311 (548)
.+.+. ... ........++ ....++...|+.++|..+++.+......++..-+ ....
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~ 306 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQ----------------PARD 306 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhh----------------hHHh
Confidence 22222 111 1111112222 4556778889999999999998764322110000 0001
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
+.......-++.+.|+.++|.+.+...
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122233334556788888888877654
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=1.6e-05 Score=81.00 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=33.2
Q ss_pred CCCCCcEEEEecccccCCCcchhhhhhhhcCceEEEecCC
Q 038673 493 TSPGATVRIMKNLRICEDCHLFMCGASQVIGREIVVRDNM 532 (548)
Q Consensus 493 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (548)
|..|..++-++.|-..||-...+-|.+...+|||.+..+|
T Consensus 1169 TQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAAN 1208 (1416)
T KOG3617|consen 1169 TQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAAN 1208 (1416)
T ss_pred hhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhh
Confidence 4567777788888899999998889999999999887655
No 90
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=6.1e-08 Score=58.57 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=31.1
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 306 YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
.|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788889999999999999999999999999985
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=1.2e-05 Score=72.52 Aligned_cols=286 Identities=12% Similarity=0.087 Sum_probs=173.2
Q ss_pred HHcCChHHHHHHHccCCCC---CeehHHHHHHHHHhCCChHHHHHHHccCCC--CChhHHHH-HHHHHHHCCChhHHHHH
Q 038673 99 VKCGFLGCSRKVFDEMPER---DVVSWTELIVAYANNGDMESAGGLFNELPL--KDKVAWTA-MVTGYVQNAKPREAIEY 172 (548)
Q Consensus 99 ~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~g~~~~A~~l 172 (548)
.+..++++|.+++..-.++ +....+.+..+|....++..|-..++++.. |...-|.. -...+-+.+.+..|+++
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3344444444444433331 222333444444444455555555544431 21111211 12344566777788887
Q ss_pred HHHHHHCCCCCCHhhHHHHHHH--HHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 038673 173 FERMQYAGVETDYVTLVGVISA--CAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 173 ~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 250 (548)
...|... |+...-..-+.+ ....+++..+..+.++.-.. .+..+.+...-...+.|+++.|.+-|+...+
T Consensus 101 ~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 101 AFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHHHHHHHHHHHHh
Confidence 7777542 332222222222 23456777777776655321 2555666666777789999999999988775
Q ss_pred ----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCC------cC-------HH
Q 038673 251 ----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVS------PS-------TD 313 (548)
Q Consensus 251 ----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~------p~-------~~ 313 (548)
.....||.-+ +..+.|+++.|+++..++++.|++-.... ..|+...|+. |- +.
T Consensus 173 vsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl---------gIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 173 VSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL---------GIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred hcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc---------CccceeccCchhcccchHHHHHHHHHH
Confidence 3456677655 45567899999999999999887633221 1111111111 11 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKMP----VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
.+|.-...+.+.|+++.|.+-+..|| ...|++|...+.-. -..+++..+.+-+.-+++++|-.+.++..++-.|+
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyC 321 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYC 321 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 34444455678899999999999997 44677777665422 23456777777788888999988889999999999
Q ss_pred HcCCchHHHHHHHH
Q 038673 390 SAGMWDDVSRVRRL 403 (548)
Q Consensus 390 ~~g~~~~a~~~~~~ 403 (548)
+..-++-|..++.+
T Consensus 322 KNeyf~lAADvLAE 335 (459)
T KOG4340|consen 322 KNEYFDLAADVLAE 335 (459)
T ss_pred hhHHHhHHHHHHhh
Confidence 99999999888753
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.59 E-value=4.4e-05 Score=70.39 Aligned_cols=297 Identities=13% Similarity=0.061 Sum_probs=183.7
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCeehHHHHH---HHHHhCCChHHHHHHHccCCCCChhHHHHHH---HHHHHCCChh
Q 038673 94 MIGMYVKCGFLGCSRKVFDEMPERDVVSWTELI---VAYANNGDMESAGGLFNELPLKDKVAWTAMV---TGYVQNAKPR 167 (548)
Q Consensus 94 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~ 167 (548)
|-+.+...|++.+|+.-|....+-|+..|.++- ..|...|+...|+.-|.++.+-.+..+.+-+ ..+.+.|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 334444455555555555555555554444433 2344555555555444444322222222222 2345566666
Q ss_pred HHHHHHHHHHHCCCC------------CCH--hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHh
Q 038673 168 EAIEYFERMQYAGVE------------TDY--VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYS 233 (548)
Q Consensus 168 ~A~~l~~~m~~~g~~------------p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~ 233 (548)
+|..=|+...+.... +-. ......+..+...|+...+......+++..+ .+...+..-..+|.
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~---Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP---WDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc---chhHHHHHHHHHHH
Confidence 666666665543210 000 1123334455667888888888888887654 48999999999999
Q ss_pred cCCCHHHHHHHHhc---CCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCc
Q 038673 234 KCGSIDDAYRIFVG---MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSP 310 (548)
Q Consensus 234 ~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p 310 (548)
..|++..|..=+.. +...++.+.--+-..+...|+.+.++...++-++ +.||....-..-...-
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklk----------- 267 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLK----------- 267 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHH-----------
Confidence 99999988765554 4456777777777788888999999888888777 6777642111110000
Q ss_pred CHHHHHHH--HHHHHHcCCHHHHHHHHHhC-CCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHH
Q 038673 311 STDHYACM--VDLLGRAGCLEEALKMVEKM-PVEPN-----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYI 382 (548)
Q Consensus 311 ~~~~~~~l--i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 382 (548)
..--.| +....+.+++.++++-.++. ...|. ...+..+-.++...+++.+|++...++++.+|++..++-
T Consensus 268 --Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 268 --KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred --HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 000011 12234567777777766654 34454 223444556778888999999999999999999988888
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 383 ILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
--+.+|.-...+++|+.=++...+.+
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 88888888888999988888776543
No 93
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.59 E-value=0.00016 Score=72.25 Aligned_cols=338 Identities=12% Similarity=0.088 Sum_probs=238.0
Q ss_pred hhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHH
Q 038673 62 CTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESA 138 (548)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 138 (548)
|-..+++..+.+..+.+++. ++....+.....-.+...|+-++|......-.. ++.+.|..+.-.+....++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence 34567788888888888884 455555544444445667899999888876655 5678899999999999999999
Q ss_pred HHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038673 139 GGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 139 ~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 214 (548)
.+.|.... +.|...|.-+.-.-++.++++.......++.+. .| ....|..+..+.--.|+...|..+.+...+.
T Consensus 95 iKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 95 IKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998754 447778888888888889999888888877765 34 4456777777788889999999999998877
Q ss_pred CCCCCChHhHHHHH------HHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038673 215 GFGPINNVVVGSAL------IDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK 285 (548)
Q Consensus 215 ~~~p~~~~~~~~~l------i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 285 (548)
...+ ++...+.-. .....+.|.++.|.+.+...... ....-.+....+.+.++.++|..++..++. ..
T Consensus 173 ~~~~-~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~--rn 249 (700)
T KOG1156|consen 173 QNTS-PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE--RN 249 (700)
T ss_pred hccC-CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh--hC
Confidence 6422 243333322 33456788899999888776532 222233455667889999999999999998 57
Q ss_pred CCHhhHHHHHHHHh-h-cCC---------------------------------------------ccCCCCcCHHHHHHH
Q 038673 286 PNGVTFIGVLTACS-H-VGL---------------------------------------------KCYGVSPSTDHYACM 318 (548)
Q Consensus 286 p~~~t~~~ll~a~~-~-~~~---------------------------------------------~~~~~~p~~~~~~~l 318 (548)
||..-|...+..+. + .++ ...|+++ ++..+
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl 326 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDL 326 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhh
Confidence 88777765554444 1 111 2223222 23333
Q ss_pred HHHHHHcCCHHH----HHHHHHhCC-------------CCCChhHHHHHH--HHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 319 VDLLGRAGCLEE----ALKMVEKMP-------------VEPNGGVWGALL--GACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 319 i~~~~~~g~~~~----A~~~~~~m~-------------~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
...|-.-...+- +..+...+. -.|....|.... ..+-..|+++.|....+.++...|.-+.
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliE 406 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIE 406 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHH
Confidence 333322111111 222222221 246777776654 5678899999999999999999999888
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 380 NYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
.|..-++++.-+|.+++|...+++..+.+.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 999999999999999999999999887654
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.1e-05 Score=74.22 Aligned_cols=393 Identities=11% Similarity=0.062 Sum_probs=218.5
Q ss_pred CCcchHHHhcc---CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCCcHHHHHHHH
Q 038673 1 MDSFPRLVFEQ---VKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPV-SFTLSALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 1 ~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~ 76 (548)
|+++|...|-+ +.++|.+.|+.=..+|+..|++++|++=-.+-++ +.|+ .-.|+....++.-.|++++|..-|.
T Consensus 17 d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~ 94 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAYS 94 (539)
T ss_pred cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence 46677777743 3356777888888888888888888776655555 4554 4567788888888888888888888
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHH-HHHccC------CC-C------CeehHHHHHHHHHhC----------
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSR-KVFDEM------PE-R------DVVSWTELIVAYANN---------- 132 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m------~~-~------~~~~~~~li~~~~~~---------- 132 (548)
.-++.. +.|...++.|..++. .+.+. +.|..- .. | ....|..++..+-++
T Consensus 95 ~GL~~d--~~n~~L~~gl~~a~~----~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 95 EGLEKD--PSNKQLKTGLAQAYL----EDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHhhcC--CchHHHHHhHHHhhh----HHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 877764 667777777777771 11111 111100 00 0 011122222221111
Q ss_pred CChHHHHHHHccCCCCChhHHHHHHHHHH-HCCChh----HHHHHHHHHHHC-CCCCCHhhHHHHHHHHHccCChhHHHH
Q 038673 133 GDMESAGGLFNELPLKDKVAWTAMVTGYV-QNAKPR----EAIEYFERMQYA-GVETDYVTLVGVISACAQLGVIKYANW 206 (548)
Q Consensus 133 g~~~~A~~~f~~m~~~~~~~~~~li~~~~-~~g~~~----~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~ 206 (548)
.++..|...+...... .....-.... ....+. .......++.+. ..+.-..-...+.++..+..+++.+.+
T Consensus 169 ~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred HHHHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 1111111111110000 0000000000 000000 000000000000 000012234556666666666777777
Q ss_pred HHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCCh---hhhHH-------HHHHHHhcCCHHHHHHHH
Q 038673 207 VCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNV---FSYSS-------MILGFAMHGRAHAAIQLF 276 (548)
Q Consensus 207 ~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~-------li~~~~~~g~~~~A~~l~ 276 (548)
-+....... . +..-++.....|...|.+......-+...+..- .-|+. +-.+|...++++.|+..|
T Consensus 246 ~y~~a~el~-~---~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 246 HYAKALELA-T---DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHhHh-h---hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 776666655 4 556666666667766666665555444332211 11111 223455566777777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHH
Q 038673 277 GDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTD-HYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGA 353 (548)
Q Consensus 277 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~ 353 (548)
.+....-..||..+=.....--.+......-+.|... -.-.=...+.+.|++.+|+..|.++. ..|+ ...|...--+
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac 401 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAAC 401 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 7766655555544332222221111111111222221 11112456678899999999999874 4565 7888888899
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
+.+.|.+..|..-.+..++++|+....|..-+.++....+|++|.+.|.+-.+..
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999998776543
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.57 E-value=9.9e-07 Score=83.37 Aligned_cols=248 Identities=13% Similarity=0.066 Sum_probs=159.5
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCh
Q 038673 25 RGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFL 104 (548)
Q Consensus 25 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 104 (548)
+-+.-.|.+..++.-.+ .....-..+......+.+++...|..+.+. ..+.+. -.|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~--~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS--SSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT--SSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC--CChhHHHHHHHHHHHhCccch
Confidence 44455688888886666 322211123445566777888888765432 333332 356666555555544443455
Q ss_pred HHHHHHHccCC-CCCe---ehH-HHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 038673 105 GCSRKVFDEMP-ERDV---VSW-TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYA 179 (548)
Q Consensus 105 ~~A~~~~~~m~-~~~~---~~~-~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 179 (548)
+.+..-+++.. ++.. .++ ......+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666665443 3211 122 22234566789999999888775 56777778888999999999999999999865
Q ss_pred CCCCCHhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CC
Q 038673 180 GVETDYVTLVGVISACAQ----LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RN 252 (548)
Q Consensus 180 g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~ 252 (548)
..| .+...+..++.. ...+..|..+|+++.+. +. .++.+.+.+..++...|++++|.+++.+... .+
T Consensus 161 --~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~--~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 161 --DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FG--STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp --SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred --CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 333 455555555433 34689999999997665 33 4888899999999999999999999988765 34
Q ss_pred hhhhHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCH
Q 038673 253 VFSYSSMILGFAMHGRA-HAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~ 288 (548)
..+.-.+|......|+. +.+.+++.++.. ..|+.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h 269 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTS
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCC
Confidence 55666677777778887 667788888887 34553
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.54 E-value=0.00069 Score=69.30 Aligned_cols=320 Identities=15% Similarity=0.120 Sum_probs=216.5
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCCCC-----ChhHHHH
Q 038673 84 FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELPLK-----DKVAWTA 155 (548)
Q Consensus 84 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~ 155 (548)
+.-|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..|...|.-..|..++++-..+ |+..+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 667888999999999999999999999998765 45668999999999999999999998876532 2333333
Q ss_pred HHHHHH-HCCChhHHHHHHHHHHH--CC----CCCCHhhHHHHHHHHHcc-----------CChhHHHHHHHHHHHcCCC
Q 038673 156 MVTGYV-QNAKPREAIEYFERMQY--AG----VETDYVTLVGVISACAQL-----------GVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 156 li~~~~-~~g~~~~A~~l~~~m~~--~g----~~p~~~t~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~ 217 (548)
.-..|. +.+..++++.+-.+... .+ +.| ..|..+.-+|+.. ....++.+.++..++.+..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333333 34777777777666654 11 233 2333333333321 1234677778888777755
Q ss_pred CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC----CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc-CC--------
Q 038673 218 PINNVVVGSALIDMYSKCGSIDDAYRIFVGMK----QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT-ET-------- 284 (548)
Q Consensus 218 p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~-------- 284 (548)
|+.+.--+.--|+..++++.|.+...+.. ..++..|.-+.-.+...+++.+|+.+.+..... |.
T Consensus 477 ---dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 477 ---DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred ---CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 55555556667888899999998887665 357889999999999999999999998876653 11
Q ss_pred ----------CCCHhhHHHHHHHHhh---------cC--------C---------------------c--cCCCC-----
Q 038673 285 ----------KPNGVTFIGVLTACSH---------VG--------L---------------------K--CYGVS----- 309 (548)
Q Consensus 285 ----------~p~~~t~~~ll~a~~~---------~~--------~---------------------~--~~~~~----- 309 (548)
.--..|...++.-.-. .| + . .....
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 0011233333333220 11 1 0 00000
Q ss_pred c--------C------HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038673 310 P--------S------TDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFEL 373 (548)
Q Consensus 310 p--------~------~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 373 (548)
| + ...|....+.+.+.++.++|...+.+.. +.| ....|...-..+...|..++|.+.|...+.+
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 0 1 1234455667777788888876666664 333 3555555556677889999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCCchHHHH--HHHHHHhCC
Q 038673 374 EPDKIGNYIILSNIYASAGMWDDVSR--VRRLLKMTG 408 (548)
Q Consensus 374 ~p~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~g 408 (548)
+|+++.....++.++.+.|+-.-|.. ++..+.+.+
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 99999999999999999998777776 777775533
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.2e-07 Score=57.22 Aligned_cols=32 Identities=34% Similarity=0.462 Sum_probs=26.4
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHccCC
Q 038673 84 FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP 115 (548)
Q Consensus 84 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 115 (548)
+.||..+||+||++|++.|++++|.++|++|+
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 78888888888888888888888888888774
No 98
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=4.5e-05 Score=73.19 Aligned_cols=224 Identities=10% Similarity=0.030 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYV-TLVGVISACAQLG-VIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
++..+-..+...++.++|+.+..++.+. .|+.. .+..--.++...| +++++...++.+.+...+ +..+|+...
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk---nyqaW~~R~ 113 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK---NYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---chHHhHHHH
Confidence 4455555667778899999999988875 45544 3444444555666 578999999999888766 777787666
Q ss_pred HHHhcCCCH--HHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc
Q 038673 230 DMYSKCGSI--DDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 230 ~~y~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
-.+.+.|.. +++..+++++.+ +|..+|+-..-.+...|+++++++.+.++++.....
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------------------ 175 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN------------------ 175 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc------------------
Confidence 666666653 667777777764 567888888888888899999999999999854332
Q ss_pred cCCCCcCHHHHHHHHHHHHHc---CC----HHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhc----CCHHHHHHHHHHHh
Q 038673 305 CYGVSPSTDHYACMVDLLGRA---GC----LEEALKMVEKM-PVEPN-GGVWGALLGACQIH----RNPEIAQIAANHLF 371 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~----~~~~~a~~~~~~~~ 371 (548)
...|+.....+.+. |. .++++++..++ ...|+ ...|+.+...+... +...+|...+..+.
T Consensus 176 -------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 176 -------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred -------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 22344333333332 22 24566666433 45565 78898888888773 34567888999988
Q ss_pred hcCCCCchhHHHHHHHHHHcC------------------CchHHHHHHHHHH
Q 038673 372 ELEPDKIGNYIILSNIYASAG------------------MWDDVSRVRRLLK 405 (548)
Q Consensus 372 ~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 405 (548)
..+|.++.+...|+..|+... ..++|.++++.+.
T Consensus 249 ~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 249 SKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 889999999999999998743 2366888888773
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=2.2e-05 Score=84.57 Aligned_cols=211 Identities=14% Similarity=0.078 Sum_probs=170.2
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--------CCeehHHHHHHHHHhCCChHHHHHHHccCC
Q 038673 75 HAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--------RDVVSWTELIVAYANNGDMESAGGLFNELP 146 (548)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 146 (548)
|+.++... |.+...|-..|......+++++|++++++... --...|.++++.-...|.-+...++|++..
T Consensus 1447 ferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44444443 56677888888888999999999999888764 123478888888888888888888998876
Q ss_pred CC-C-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhH
Q 038673 147 LK-D-KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVV 224 (548)
Q Consensus 147 ~~-~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 224 (548)
+- | ...|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++.+.-+.- .....
T Consensus 1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~-eHv~~ 1602 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ-EHVEF 1602 (1710)
T ss_pred HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh-hhHHH
Confidence 43 3 457889999999999999999999999874 33456678888888899988899999999988765431 35667
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 038673 225 GSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGV 289 (548)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 289 (548)
..-.+.+-.++|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-..
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 77788888899999999999998874 356789999999999999999999999999988777654
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=1.2e-05 Score=71.76 Aligned_cols=149 Identities=9% Similarity=0.121 Sum_probs=108.8
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
-+..|...|+++.+....+.+..+. ..+...++.++++..++...+ ..|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~-------------------- 71 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQ-------------------- 71 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCC--------------------
Confidence 3456777777777655443322221 012225566777777777666 3344
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHH-HHhcCC--HHHHHHHHHHHhhcCCCCchhHH
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGA-CQIHRN--PEIAQIAANHLFELEPDKIGNYI 382 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~-~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~ 382 (548)
+...|..+...|...|++++|...|++.. ..|+ ...+..+..+ +...|+ .++|.++++++++.+|+++.++.
T Consensus 72 ---~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~ 148 (198)
T PRK10370 72 ---NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM 148 (198)
T ss_pred ---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence 55678888899999999999999998774 5565 6666666665 356666 59999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 383 ILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
.++..+...|++++|...++++.+..-
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999876543
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.46 E-value=0.00032 Score=78.90 Aligned_cols=324 Identities=13% Similarity=0.012 Sum_probs=199.6
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----CC---e-----ehHHHHHHHHHh
Q 038673 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE----RD---V-----VSWTELIVAYAN 131 (548)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~---~-----~~~~~li~~~~~ 131 (548)
..|++..+....+.+-... ...+..........+...|++++|...++...+ .+ . .....+...+..
T Consensus 386 ~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 386 NQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred hcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 4456665555554431111 112233334445556678899998888765432 11 1 111222344568
Q ss_pred CCChHHHHHHHccCC----CCCh----hHHHHHHHHHHHCCChhHHHHHHHHHHHCC--C-CCC--HhhHHHHHHHHHcc
Q 038673 132 NGDMESAGGLFNELP----LKDK----VAWTAMVTGYVQNAKPREAIEYFERMQYAG--V-ETD--YVTLVGVISACAQL 198 (548)
Q Consensus 132 ~g~~~~A~~~f~~m~----~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~-~p~--~~t~~~ll~~~~~~ 198 (548)
.|++++|...+++.. ..+. ..++.+...+...|++++|...+.+..... . .+. ..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 899999998877643 2222 345666677788999999999998876421 1 111 23445556677888
Q ss_pred CChhHHHHHHHHHHHc----CCC--CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC------C--ChhhhHHHHHHHH
Q 038673 199 GVIKYANWVCEIAEGS----GFG--PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ------R--NVFSYSSMILGFA 264 (548)
Q Consensus 199 g~~~~a~~~~~~~~~~----~~~--p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~ 264 (548)
|+++.|...+++.... +.. | .....+..+...+...|++++|...+.+... + ....+..+...+.
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLP-MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999988876542 221 1 1334455667777888999999888877642 1 1233444566778
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC--
Q 038673 265 MHGRAHAAIQLFGDMVKTETKPN-GVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVE-- 341 (548)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 341 (548)
..|+.++|...+.+.....-... ...+. .......+..+...|+.+.|.+.+......
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 684 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWI-------------------ANADKVRLIYWQMTGDKEAAANWLRQAPKPEF 684 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHh-------------------hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC
Confidence 89999999999888765211100 00000 000111224455689999999998776411
Q ss_pred CChh----HHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 342 PNGG----VWGALLGACQIHRNPEIAQIAANHLFELE------PDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 342 p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
.... .+..+..++...|+.++|...++++.+.. +....++..++.+|.+.|+.++|...+.+..+..
T Consensus 685 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 685 ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 1111 13345567888999999999999887732 1223467788889999999999999998887644
No 102
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00013 Score=67.73 Aligned_cols=225 Identities=16% Similarity=0.141 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH-----HccCChhHHHHHHHHHHHcCCCCCChHhHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISAC-----AQLGVIKYANWVCEIAEGSGFGPINNVVVG 225 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 225 (548)
..--.++--|.++++..+|..+.+++.- ..|-......+..+. .....+.-|.+.|+.+-.++... .+..-.
T Consensus 286 EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec-DTIpGR 362 (557)
T KOG3785|consen 286 EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC-DTIPGR 362 (557)
T ss_pred HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc-ccccch
Confidence 3445566678899999999998877632 344444333333322 22234567778887776666553 233334
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhc
Q 038673 226 SALIDMYSKCGSIDDAYRIFVGMKQ----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301 (548)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 301 (548)
.++...+.-..++++..-.++.+.. .|...+| +..+++..|++.+|+++|-+.....+ -|..+|
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y---------- 430 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILY---------- 430 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHH----------
Confidence 5555556666677888877777763 3444444 77889999999999999976644212 233333
Q ss_pred CCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 038673 302 GLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALL-GACQIHRNPEIAQIAANHLFELEPDKIGN 380 (548)
Q Consensus 302 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 380 (548)
...|...|.+++.++-|++++-++....+..+.-.+| .-|-+.+.+=-|.++|+.+..++|... .
T Consensus 431 -------------~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE-n 496 (557)
T KOG3785|consen 431 -------------KSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE-N 496 (557)
T ss_pred -------------HHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc-c
Confidence 2345678899999999999998887444456666666 678888998889999999888888643 2
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCC
Q 038673 381 YIILSNIYASAGMWDDVSRVRRLLKMTGLKKNP 413 (548)
Q Consensus 381 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 413 (548)
| .|+-....-+|..+....-.|.|
T Consensus 497 W---------eGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 497 W---------EGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred c---------CCccchHHHHHHHHHcCCCCCCc
Confidence 2 23333444555555544444433
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.46 E-value=0.00041 Score=64.22 Aligned_cols=201 Identities=10% Similarity=0.023 Sum_probs=134.9
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
..+..+...|+...|+.....+.+.. +.|...+..-..+|...|.+..|..=++.+.+..-. +.....-+-..+..
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D---nTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD---NTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc---chHHHHHHHHHHHh
Confidence 34455667788888888888887652 456666666777788888888887777776666544 66666677777888
Q ss_pred CCCHHHHHHHHhcCCCCChh------hhHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038673 235 CGSIDDAYRIFVGMKQRNVF------SYSSM---------ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS 299 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~~~~~~------~~~~l---------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 299 (548)
.|+.+.++...++..+-|+. .|-.+ +......+++.++++-.+...+. .|....+
T Consensus 236 vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~i-------- 305 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMI-------- 305 (504)
T ss_pred hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccce--------
Confidence 88888888887776653321 11111 11234456666666666665553 2221110
Q ss_pred hcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038673 300 HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDK 377 (548)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 377 (548)
....+..+-..+...|++.+|++.-.+.. +.|| +.++---..+|.....++.|+.-|+.+.+.++++
T Consensus 306 -----------r~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 306 -----------RYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred -----------eeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 11224445566778899999998877664 5566 6677666788888999999999999999999988
Q ss_pred chh
Q 038673 378 IGN 380 (548)
Q Consensus 378 ~~~ 380 (548)
..+
T Consensus 375 ~~~ 377 (504)
T KOG0624|consen 375 TRA 377 (504)
T ss_pred HHH
Confidence 644
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.45 E-value=6.8e-05 Score=80.13 Aligned_cols=180 Identities=12% Similarity=0.095 Sum_probs=122.9
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
.++.......++.-+..+...|... .-+...+..+..+|-+.|+.+++..+++++++..+. ++.+.|.+...|+.
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~---n~~aLNn~AY~~ae 162 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD---NPEIVKKLATSYEE 162 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHH
Confidence 3444444455554444445555543 334457788888999999999999999999998844 99999999999999
Q ss_pred CCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH-HHHHHHHhhcCCccCCCCcCHH
Q 038673 235 CGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTF-IGVLTACSHVGLKCYGVSPSTD 313 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~~~~p~~~ 313 (548)
. ++++|.+++.+.. ..|...+++.++.++|.++.. ..|+...+ ..++..
T Consensus 163 ~-dL~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~k---------------- 212 (906)
T PRK14720 163 E-DKEKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERK---------------- 212 (906)
T ss_pred h-hHHHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHH----------------
Confidence 9 9999998877653 347778899999999999988 45554432 111111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
. ...+....-..++--+...|...++++.+..+++.+++.+|.|..+..-++..|.
T Consensus 213 --------i------------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 --------V------------LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred --------H------------HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 0 1111112234455555566777777777777777777777777767777776665
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=0.0002 Score=73.30 Aligned_cols=261 Identities=11% Similarity=0.097 Sum_probs=158.5
Q ss_pred hccCCCCCcchHHHHHH--HHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCC---
Q 038673 9 FEQVKYKNPFLWTALIR--GYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGG--- 83 (548)
Q Consensus 9 f~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--- 83 (548)
|-.+..=|..+-.+|+. .|+.-|+.+.|.+-.+-++ ....|..+.+.|.+..+++-|+-.+..|....+
T Consensus 718 Fvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRA 791 (1416)
T KOG3617|consen 718 FVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARA 791 (1416)
T ss_pred hcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHH
Confidence 44444446666666664 3667788888877766554 335678888888887777777766665533210
Q ss_pred -----CCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCC-ChhHHHHHH
Q 038673 84 -----FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLK-DKVAWTAMV 157 (548)
Q Consensus 84 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li 157 (548)
-.++ ..-....-.-...|.+++|..+|.+.++ |..|=..|...|.+++|.++-+.-..- =..||..-.
T Consensus 792 lR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA 865 (1416)
T KOG3617|consen 792 LRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYA 865 (1416)
T ss_pred HHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHH
Confidence 1121 2222222233456777888777776654 333445566677777777765432111 122454455
Q ss_pred HHHHHCCChhHHHHHHHHH----------HHCC---------CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038673 158 TGYVQNAKPREAIEYFERM----------QYAG---------VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGP 218 (548)
Q Consensus 158 ~~~~~~g~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 218 (548)
.-+-..++.+.|++.|++- .... -..|...|.....-.-..|+.+.|..+|..+.
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~------ 939 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK------ 939 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh------
Confidence 5555556666666666542 1111 01233444455555566788888888876543
Q ss_pred CChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038673 219 INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTAC 298 (548)
Q Consensus 219 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 298 (548)
-|-+++...|-.|+.++|-++-++- .|.....-+...|-..|++.+|+..|.+.+ +|...|.-|
T Consensus 940 -----D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlc 1003 (1416)
T KOG3617|consen 940 -----DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLC 1003 (1416)
T ss_pred -----hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence 3556777777788888888877664 455666678888999999999999998865 356666666
Q ss_pred hhcCC
Q 038673 299 SHVGL 303 (548)
Q Consensus 299 ~~~~~ 303 (548)
-..++
T Consensus 1004 KEnd~ 1008 (1416)
T KOG3617|consen 1004 KENDM 1008 (1416)
T ss_pred HhcCH
Confidence 55554
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.43 E-value=7.4e-06 Score=69.10 Aligned_cols=120 Identities=11% Similarity=-0.038 Sum_probs=79.9
Q ss_pred HHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHH
Q 038673 244 IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLG 323 (548)
Q Consensus 244 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~ 323 (548)
+|++..+-++..+......+...|++++|...|+.... +.|+ +...|..+..++.
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~-----------------------~~~a~~~lg~~~~ 69 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVM--AQPW-----------------------SWRAHIALAGTWM 69 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCC-----------------------cHHHHHHHHHHHH
Confidence 33443333444455556666777777777777777765 3444 3345667777777
Q ss_pred HcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 324 RAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 324 ~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
+.|++++|...|++.. ..| +...|..+..++...|+.++|...++..++..|+++..+.....+.
T Consensus 70 ~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 70 MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 7778888877777763 344 3666677777777788888888888888888888776666555444
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0013 Score=69.08 Aligned_cols=336 Identities=14% Similarity=0.088 Sum_probs=189.8
Q ss_pred HHHHHHHHCCCC--CChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC-CCCCChhHHHHHHHHHHHcCChHHHHHHHccC
Q 038673 38 SLYCSMRREGIG--PVSFTLSALFKACTEVLDVSLGQQIHAQTILLG-GFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEM 114 (548)
Q Consensus 38 ~~~~~m~~~g~~--p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 114 (548)
.+.++..+.+++ .|+...+...+|+...+-..+-.++++.++-.. .+..+....|.|+-.-.+. +.....+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 344444444332 245555666666666666666666666654322 1223333444444433333 333344444444
Q ss_pred CCCCeehHHHHHHHHHhCCChHHHHHHHccCC-------------------------CCChhHHHHHHHHHHHCCChhHH
Q 038673 115 PERDVVSWTELIVAYANNGDMESAGGLFNELP-------------------------LKDKVAWTAMVTGYVQNAKPREA 169 (548)
Q Consensus 115 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------------------------~~~~~~~~~li~~~~~~g~~~~A 169 (548)
..-|.. .+......++-+++|..+|++.. -..+..|+.+..+-.+.|...+|
T Consensus 1047 dnyDa~---~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1047 DNYDAP---DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred ccCCch---hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHH
Confidence 331111 11222333344444444444321 11356899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 170 IEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 170 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
++-|-+. .|...|..++..+.+.|.+++-.+++..+.+..-+| .+-+.|+-+|++.+++.+-++++.
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~----~id~eLi~AyAkt~rl~elE~fi~--- 1190 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP----YIDSELIFAYAKTNRLTELEEFIA--- 1190 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc----cchHHHHHHHHHhchHHHHHHHhc---
Confidence 8877533 366789999999999999999999998877776554 445678999999999988776653
Q ss_pred CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC-----ccCCCCcCHHHHHHHHHHHHH
Q 038673 250 QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-----KCYGVSPSTDHYACMVDLLGR 324 (548)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~~~~p~~~~~~~li~~~~~ 324 (548)
-||+.....+-.-|...|.++.|.-+|...-. |..+-..+.+.|. ....-.-+..+|-.+-.++..
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN---------~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN---------FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc
Confidence 35665566666667777777777666654322 1111111111111 000111133445555555544
Q ss_pred cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 038673 325 AGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 325 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
.+.+.-|.-. -+.+-....-..-|+..|...|-+++-+.+++..+.++.-+.+.|.-|+-.|++- +.++..+-++
T Consensus 1262 ~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1262 KEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred hhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 4443333110 0001122334556667777777777777777777777777777788887777764 3344444333
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.38 E-value=0.00011 Score=76.75 Aligned_cols=135 Identities=12% Similarity=0.034 Sum_probs=90.9
Q ss_pred cchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-Ch--hhHHHHHHHhhccCCcHHHHHHHH
Q 038673 3 SFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VS--FTLSALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 3 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~--~~~~~ll~a~~~~~~~~~a~~~~~ 76 (548)
..|.+.|+..- ..+..+|-.....|++..+++.|..+.-..-+. .| -. ..|..+.-.+...++...+..-|+
T Consensus 509 ~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ 586 (1238)
T KOG1127|consen 509 KRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQ 586 (1238)
T ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhccccccCccchhhHHHHHH
Confidence 35777777544 346678888999999999999998883332221 12 11 122233334566777888888888
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHH---HHHHHHhCCChHHHHHH
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTE---LIVAYANNGDMESAGGL 141 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~ 141 (548)
..++.. |.|...|..|..+|.++|++..|.++|.+...-++.++-. ....-+..|.+.+|+..
T Consensus 587 sALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 587 SALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred HHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 888875 7788999999999999999999999998887644333221 12233455666666555
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.38 E-value=2.8e-05 Score=83.75 Aligned_cols=212 Identities=14% Similarity=0.120 Sum_probs=166.1
Q ss_pred HHHHHHCCCCCCH-hhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCC-CChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 173 FERMQYAGVETDY-VTLVGVISACAQLGVIKYANWVCEIAEGS-GFGP-INNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 173 ~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
|+++... .||. ..|..-+......++++.|+++.+++++. ++.- ..-..+|.+++++-..-|.-+...++|+++.
T Consensus 1447 ferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 3444443 4544 45666777778889999999999988753 1110 0245678888888888888889999999988
Q ss_pred CC-C-hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCC
Q 038673 250 QR-N-VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGC 327 (548)
Q Consensus 250 ~~-~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 327 (548)
+- | ...|..|..-|...++.++|.++|+.|.+. +.-....|...++.+.+..+
T Consensus 1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-------------------------F~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-------------------------FGQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-------------------------hcchhhHHHHHHHHHhcccH
Confidence 63 3 456888999999999999999999999884 23355679999999999999
Q ss_pred HHHHHHHHHhCC-CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 328 LEEALKMVEKMP-VEPN---GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 328 ~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
-++|.+++.+.- .-|. .....-....-.++|+.+.+..+|+..+.-.|.....|..++++-.+.|..+.+..+|++
T Consensus 1580 ~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999987663 2233 334444556667899999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcc
Q 038673 404 LKMTGLKK 411 (548)
Q Consensus 404 m~~~g~~~ 411 (548)
....++.+
T Consensus 1660 vi~l~l~~ 1667 (1710)
T KOG1070|consen 1660 VIELKLSI 1667 (1710)
T ss_pred HHhcCCCh
Confidence 99888764
No 110
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.0017 Score=68.30 Aligned_cols=351 Identities=14% Similarity=0.154 Sum_probs=226.9
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhh-----HHHHHHHhhccCCcHHHHHHHHHHHHhC-------
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFT-----LSALFKACTEVLDVSLGQQIHAQTILLG------- 82 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-----~~~ll~a~~~~~~~~~a~~~~~~~~~~~------- 82 (548)
.|+..-+.-+.++...+-+.+-++++++..-. |+.++ -+.|+-...+. +........+.+-..+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~i 1057 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEI 1057 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHH
Confidence 35555667788999999999999999998753 32222 22222222221 2222222222222111
Q ss_pred ---------------CCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCC
Q 038673 83 ---------------GFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPL 147 (548)
Q Consensus 83 ---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 147 (548)
.+..+....+.||. .-+.++.|.+.-++.. ....|..+..+-.+.|.+.+|.+-|-+ .
T Consensus 1058 ai~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyik--a 1130 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIK--A 1130 (1666)
T ss_pred HhhhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHh--c
Confidence 01222222222222 1233444444444333 345799999999999999999988754 4
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 148 KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
.|+..|.-++....+.|.+++-.+++...++..-.|... +.++-+|++.+++.+.+++.. .| +......
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gp--N~A~i~~ 1199 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GP--NVANIQQ 1199 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CC--CchhHHH
Confidence 577889999999999999999999988777766566544 468889999998887666542 23 6667778
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC----
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---- 303 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---- 303 (548)
+.+-+...|.++.|.-+|.. +..|..|...+...|++..|.+.-++. .+..||..+-.||...+.
T Consensus 1200 vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH
Confidence 88889999999999888865 457888999999999999998876654 356788888888887664
Q ss_pred --ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhh-cC-CC-
Q 038673 304 --KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VE-PNGGVWGALLGACQIHRNPEIAQIAANHLFE-LE-PD- 376 (548)
Q Consensus 304 --~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~-p~- 376 (548)
....+.....-..-++..|...|.++|-..+++... ++ .....|+-|.-.|.+.+ +++..+-++.... ++ |.
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKv 1347 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKV 1347 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHH
Confidence 333444566778889999999999999999988652 22 22334444444444432 3333333222221 11 11
Q ss_pred -----CchhHHHHHHHHHHcCCchHHHH
Q 038673 377 -----KIGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 377 -----~~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
....|.-|.-.|.+-..|+.|.-
T Consensus 1348 iRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1348 IRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 12255566666666666666654
No 111
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.37 E-value=0.00037 Score=70.54 Aligned_cols=192 Identities=17% Similarity=0.128 Sum_probs=132.3
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHH
Q 038673 27 YILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGC 106 (548)
Q Consensus 27 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 106 (548)
-.....+.+|+.+++.+..+. .-..-|..+..-|+..|+++.|.++|-.. ..++.-|.+|.+.|++++
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc----------chhHHHHHHHhccccHHH
Confidence 344566777777777776542 22334667777788888888888877542 235567888888888888
Q ss_pred HHHHHccCCCC--CeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC
Q 038673 107 SRKVFDEMPER--DVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD 184 (548)
Q Consensus 107 A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 184 (548)
|.++-.+...| ....|-+-..-+-+.|++.+|++++-.+..|+. -|..|-+.|..+..+++..+-...-+
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l--- 881 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL--- 881 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhh---
Confidence 88888877665 445566666677888888888888888877764 35677888888888887765432211
Q ss_pred HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 185 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
..|-..+..-+-..|++..|..-|-+ ..-|.+.++||-..+-|++|.++-..--
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~fle-----------a~d~kaavnmyk~s~lw~dayriakteg 935 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLE-----------AGDFKAAVNMYKASELWEDAYRIAKTEG 935 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHh-----------hhhHHHHHHHhhhhhhHHHHHHHHhccc
Confidence 12344455566677888887765532 2345677888888888988888766543
No 112
>PLN02789 farnesyltranstransferase
Probab=98.35 E-value=9.8e-05 Score=70.85 Aligned_cols=208 Identities=11% Similarity=0.022 Sum_probs=123.5
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccC-CcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRREGIGPVS-FTLSALFKACTEVL-DVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
+++.+-..+...++.++|+.+..++++. .|+. .+|+.--.++...+ +++++...++.+++.. +.+..+|+..--
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~ 114 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHH
Confidence 4556666677778888999999888873 4643 34555555555556 5688888888888875 667777776665
Q ss_pred HHHHcCCh--HHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCCC---CChhHHHHHHHHHHHC---CC
Q 038673 97 MYVKCGFL--GCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELPL---KDKVAWTAMVTGYVQN---AK 165 (548)
Q Consensus 97 ~~~~~g~~--~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~---g~ 165 (548)
++.+.|.. +++..+++++.+ +|..+|+.....+...|+++++++.++++.+ .|..+|+.....+.+. |.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 66666652 556666666554 3455666666666666777777777766653 3455666555444433 22
Q ss_pred h----hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 166 P----REAIEYFERMQYAGVETDYVTLVGVISACAQ----LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 166 ~----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
. ++++....++.... +-|...|+-+...+.. .+...++..+...+.+.++. +......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~---s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN---HVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC---cHHHHHHHHHHHHh
Confidence 2 34455554444432 2244445544444444 22334455555555554433 55666666666664
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.34 E-value=2.5e-05 Score=72.41 Aligned_cols=166 Identities=13% Similarity=0.014 Sum_probs=119.3
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CC-h---hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RN-V---FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIG 293 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 293 (548)
.....+..+...|.+.|++++|...|+++.. |+ . .+|..+..+|...|++++|+..++++.+. .|+....
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-- 106 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDA-- 106 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCch--
Confidence 4667777888888889999999998887764 22 2 35677788888999999999999999873 4442210
Q ss_pred HHHHHhhcCCccCCCCcCHHHHHHHHHHHHH--------cCCHHHHHHHHHhCC-CCCCh-hHHH---------------
Q 038673 294 VLTACSHVGLKCYGVSPSTDHYACMVDLLGR--------AGCLEEALKMVEKMP-VEPNG-GVWG--------------- 348 (548)
Q Consensus 294 ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~--------~g~~~~A~~~~~~m~-~~p~~-~~~~--------------- 348 (548)
...+..+...+.. .|+.++|.+.++++- ..|+. ..+.
T Consensus 107 ------------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~ 168 (235)
T TIGR03302 107 ------------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGK 168 (235)
T ss_pred ------------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHH
Confidence 0112222223332 377888888888773 34542 2222
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHhhcCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 349 --ALLGACQIHRNPEIAQIAANHLFELEPDK---IGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 349 --~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.+...+...|+++.|...++.+++..|++ +..+..++.+|...|++++|..+++.+..+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23345778899999999999999987764 468899999999999999999999888654
No 114
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.33 E-value=8.5e-07 Score=54.38 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=32.9
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPVS 52 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 52 (548)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=0.0002 Score=69.61 Aligned_cols=128 Identities=19% Similarity=0.174 Sum_probs=104.6
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
...+-...-.+...|+.++|+..++.++. -.||.. .......+.+.+.++..+|.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~-----------------------~~~~~~~~i~~~~nk~~~A~ 360 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNP-----------------------YYLELAGDILLEANKAKEAI 360 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCH-----------------------HHHHHHHHHHHHcCChHHHH
Confidence 34444445556778999999999999887 355544 34666778999999999999
Q ss_pred HHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 333 KMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 333 ~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+.++++. ..|+ ...+-.+-.++.+.|++.+|+.+++....-+|+++..|..|+.+|...|+..++...+.++.
T Consensus 361 e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 361 ERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999885 6787 55566666899999999999999999999999999999999999999999999888877664
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.24 E-value=1.3e-05 Score=67.54 Aligned_cols=95 Identities=11% Similarity=-0.083 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASA 391 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 391 (548)
.+..+...+...|++++|...|+... ..| +...|..+..++...|+++.|...++++.+++|+++..+..++.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 35556778889999999999999874 555 4778888889999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 038673 392 GMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 392 g~~~~a~~~~~~m~~~g 408 (548)
|++++|...++...+..
T Consensus 106 g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999886643
No 117
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=2e-06 Score=52.63 Aligned_cols=35 Identities=29% Similarity=0.631 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 288 (548)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=3.2e-05 Score=76.30 Aligned_cols=214 Identities=14% Similarity=0.058 Sum_probs=126.1
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChH
Q 038673 26 GYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLG 105 (548)
Q Consensus 26 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 105 (548)
-+.++|+..+|.-.|+...... +-+...|-.|....+..++-..|...+.+.++.. +.|..+.-+|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHH
Confidence 3667888888888888887753 2266778888888887777778888888888765 667778888888888888888
Q ss_pred HHHHHHccCCCCC-eehHHHHH---------HHHHhCCChHHHHHHHccCC-----CCChhHHHHHHHHHHHCCChhHHH
Q 038673 106 CSRKVFDEMPERD-VVSWTELI---------VAYANNGDMESAGGLFNELP-----LKDKVAWTAMVTGYVQNAKPREAI 170 (548)
Q Consensus 106 ~A~~~~~~m~~~~-~~~~~~li---------~~~~~~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~ 170 (548)
.|.+.|+.-..-. ...|...- ..+.....+....++|-++. ..|......|.-.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888777652100 00000000 01111111222222332221 235555556666666666666666
Q ss_pred HHHHHHHHCCCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhc
Q 038673 171 EYFERMQYAGVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247 (548)
Q Consensus 171 ~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 247 (548)
+.|+..+.. +| |...|+-|...+++....++|...|.++++..+. -+.+...|.-.|...|.+++|.+.|-.
T Consensus 451 Dcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~---yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 451 DCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG---YVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC---eeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 666665543 33 3344555655566666666666666666554433 455555556666666666666655543
No 119
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.23 E-value=0.0021 Score=72.38 Aligned_cols=329 Identities=12% Similarity=-0.026 Sum_probs=202.3
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCC-C----CCC--hhHHHHHHHHHH
Q 038673 27 YILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGG-F----TSD--LYVGNTMIGMYV 99 (548)
Q Consensus 27 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~----~~~--~~~~~~li~~~~ 99 (548)
+...|++..+...++.+.......+..........+...|+++++...+......-. . .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666555555542211111222223334445677889999988887765310 0 111 112223344566
Q ss_pred HcCChHHHHHHHccCCC----CCe----ehHHHHHHHHHhCCChHHHHHHHccCCC-------CC--hhHHHHHHHHHHH
Q 038673 100 KCGFLGCSRKVFDEMPE----RDV----VSWTELIVAYANNGDMESAGGLFNELPL-------KD--KVAWTAMVTGYVQ 162 (548)
Q Consensus 100 ~~g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~~f~~m~~-------~~--~~~~~~li~~~~~ 162 (548)
..|++++|...+++..+ .+. ...+.+...+...|++++|...+.+... +. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 88999999998887543 221 2345566677889999999998877641 11 2345566778889
Q ss_pred CCChhHHHHHHHHHHH----CCCC--C-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcC--CCCCChHhHHHHHHHHHh
Q 038673 163 NAKPREAIEYFERMQY----AGVE--T-DYVTLVGVISACAQLGVIKYANWVCEIAEGSG--FGPINNVVVGSALIDMYS 233 (548)
Q Consensus 163 ~g~~~~A~~l~~~m~~----~g~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~~~li~~y~ 233 (548)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+....... ..|......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999887654 2211 1 22234445556677899999999988875531 112123455666777888
Q ss_pred cCCCHHHHHHHHhcCCC----C-ChhhhH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC
Q 038673 234 KCGSIDDAYRIFVGMKQ----R-NVFSYS-----SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL 303 (548)
Q Consensus 234 ~~g~~~~A~~~~~~~~~----~-~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 303 (548)
..|+++.|...++.... . ....+. ..+..+...|+.+.|..++.............
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~-------------- 689 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHF-------------- 689 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchh--------------
Confidence 99999999988877632 1 111111 12244556789999998877654311110000
Q ss_pred ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038673 304 KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-------VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 304 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
....+..+..++...|+.++|...+++.. ..++ ..+...+-.++...|+.+.|...+.+++++..
T Consensus 690 -------~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 690 -------LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred -------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 01123456677888999999999888762 1122 23444455778899999999999999998554
Q ss_pred C
Q 038673 376 D 376 (548)
Q Consensus 376 ~ 376 (548)
.
T Consensus 763 ~ 763 (903)
T PRK04841 763 R 763 (903)
T ss_pred c
Confidence 3
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.23 E-value=6e-05 Score=67.26 Aligned_cols=116 Identities=12% Similarity=0.029 Sum_probs=71.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH-HhcCCC--HH
Q 038673 163 NAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM-YSKCGS--ID 239 (548)
Q Consensus 163 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~-y~~~g~--~~ 239 (548)
.++.++++..++...+.+ +.|...|..+...+...|+++.|...++.+.+.... +..++..+..+ |...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCCCcH
Confidence 344455555555555443 445556666666666666677776666666665543 66666666664 355555 36
Q ss_pred HHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 240 DAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 240 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
+|.+++++..+ .+...+..+...+...|++++|+..|+++.+.
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67766666653 24456666666677777777777777777664
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=3.7e-05 Score=77.77 Aligned_cols=214 Identities=13% Similarity=0.048 Sum_probs=164.2
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
.+...+...|-..+|+.+|+++. .+..++.+|...|+..+|..+..+-.+. | ++...|..+.+....
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek---~-~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK---D-PDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC---C-CcchhHHHhhhhccC
Confidence 45567778888889999888764 3455777888888888888888877762 2 488889999998888
Q ss_pred CCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHH
Q 038673 235 CGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDH 314 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~ 314 (548)
.--+++|.++++....+--..|+. ...+++++.++.+.|+.-.+. .|- ...+
T Consensus 470 ~s~yEkawElsn~~sarA~r~~~~---~~~~~~~fs~~~~hle~sl~~--npl-----------------------q~~~ 521 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSLAL---LILSNKDFSEADKHLERSLEI--NPL-----------------------QLGT 521 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhhcc---ccccchhHHHHHHHHHHHhhc--Ccc-----------------------chhH
Confidence 888899999988765442222222 223478899999988876652 221 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKM-PVEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAG 392 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 392 (548)
|-.+.-+..+.++++.|.+.|..- ...|| ...||.+-.++.+.++..+|...+.++++.+-.+...+....-...+.|
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvg 601 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVG 601 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcc
Confidence 666667777889999988888765 36787 7889999999999999999999999999987777777777777888999
Q ss_pred CchHHHHHHHHHHhCCC
Q 038673 393 MWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 393 ~~~~a~~~~~~m~~~g~ 409 (548)
.|++|.+.+.++.+...
T Consensus 602 e~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 602 EFEDAIKAYHRLLDLRK 618 (777)
T ss_pred cHHHHHHHHHHHHHhhh
Confidence 99999999998875443
No 122
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.20 E-value=2.6e-06 Score=51.78 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGP 50 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 50 (548)
+.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999987
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=3.4e-05 Score=78.05 Aligned_cols=205 Identities=16% Similarity=0.045 Sum_probs=140.4
Q ss_pred HHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CCeehHHHHHHHHHhCCChHH
Q 038673 60 KACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RDVVSWTELIVAYANNGDMES 137 (548)
Q Consensus 60 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~ 137 (548)
..+...|-...|..+++.+ ..|..+|.+|...|+..+|..+..+-.+ ||...|..+.......--+++
T Consensus 406 ell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred HHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHH
Confidence 3444555556666666544 3345667777777777777776655443 566677777777666666777
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 038673 138 AGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 138 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 217 (548)
|.++++....+--..|+.. ...++++.++.+.|+.-.+.+ +.-..||-....+..+.++++.+.+.|...+...+.
T Consensus 476 awElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 476 AWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 7777766554322222222 233678888888887655432 234456777777777888888888888887776644
Q ss_pred CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 218 PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 218 p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
+...||.+-.+|.+.|+-.+|...+.+..+- +...|...+......|.+++|++.+.++..
T Consensus 552 ---~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 552 ---NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred ---chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888999999999999999998888887753 344566666677788889999888888765
No 124
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.16 E-value=0.015 Score=60.95 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 038673 346 VWGALLGACQIHRNPE---IAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 411 (548)
+.+.|+..|.+.++.. +|+-+++..+...|.|...-..|+++|+-.|-+..|.++++.+.-+.+..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 3456778888888764 56677777778889998888899999999999999999998886555543
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.15 E-value=0.00024 Score=75.18 Aligned_cols=140 Identities=9% Similarity=0.018 Sum_probs=112.5
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--R-NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLT 296 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 296 (548)
.+...+-.|.......|.+++|..+++...+ | +...+..+...+.+.+++++|+..+++... ..|+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~-------- 153 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSS-------- 153 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCC--------
Confidence 3688888899999999999999999998874 4 455677788889999999999999999887 45653
Q ss_pred HHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038673 297 ACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELE 374 (548)
Q Consensus 297 a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 374 (548)
......+..++.+.|++++|..+|++.. ..|+ ..+|.++-.++...|+.+.|...|+++++..
T Consensus 154 ---------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 154 ---------------AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred ---------------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3457888889999999999999999885 3454 6778888888999999999999999999866
Q ss_pred CCCchhHHHH
Q 038673 375 PDKIGNYIIL 384 (548)
Q Consensus 375 p~~~~~~~~l 384 (548)
.+....|..+
T Consensus 219 ~~~~~~~~~~ 228 (694)
T PRK15179 219 GDGARKLTRR 228 (694)
T ss_pred CcchHHHHHH
Confidence 5544444433
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00025 Score=63.52 Aligned_cols=155 Identities=11% Similarity=0.099 Sum_probs=102.2
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
+..+ ..+-..|--.|+-+.+..+...... .|....+..+....+.|++.+|+..|++... ..|
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p----------- 131 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAP----------- 131 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCC-----------
Confidence 4444 5555556666666666666555332 2334445566677777777777777777765 233
Q ss_pred HhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038673 298 CSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
+|...|+.+.-+|.+.|++++|..-|.+.. +.|+ +...+.|...+.-.|+.+.|+.++.......+
T Consensus 132 ------------~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 132 ------------TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred ------------CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 245567777777777777777777666553 4443 56667777777777778888777777777666
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHH
Q 038673 376 DKIGNYIILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~a~~~~ 401 (548)
.+..+-..|..+....|++++|..+.
T Consensus 200 ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 200 ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 67777777777777777777777654
No 127
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.14 E-value=0.00023 Score=65.89 Aligned_cols=96 Identities=11% Similarity=-0.066 Sum_probs=58.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh----hhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChh--
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVS----FTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLY-- 89 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~-- 89 (548)
....+-.+...+.+.|++++|...|++.... .|+. .++..+..++...|+++.|...++.+++.. +.+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchH
Confidence 4455666777777778888888888777663 2332 345666667777788888888888777764 22222
Q ss_pred -HHHHHHHHHHHc--------CChHHHHHHHccCC
Q 038673 90 -VGNTMIGMYVKC--------GFLGCSRKVFDEMP 115 (548)
Q Consensus 90 -~~~~li~~~~~~--------g~~~~A~~~~~~m~ 115 (548)
++..+..++... |+.+.|.+.|+.+.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 142 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELI 142 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 344444444433 44555555555544
No 128
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.11 E-value=0.00017 Score=75.57 Aligned_cols=60 Identities=15% Similarity=0.015 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 344 GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 344 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
..+|..+--.|....+++.|..+|.+...++|.+...+...+.+....|+.-+...+|..
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 455655555666777899999999999999999988888777777788887777777765
No 129
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.09 E-value=6.5e-06 Score=49.99 Aligned_cols=34 Identities=35% Similarity=0.616 Sum_probs=32.0
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKP 286 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 286 (548)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0022 Score=57.59 Aligned_cols=226 Identities=15% Similarity=0.054 Sum_probs=144.2
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChh-HHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIK-YANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
++..-.-+-++|...|.+...+.- ... |-.|....+..+......-++.+ .-..+.+.+...... .+......
T Consensus 40 ~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~--sn~i~~l~ 113 (299)
T KOG3081|consen 40 DVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDG--SNLIDLLL 113 (299)
T ss_pred hhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccc--hhHHHHHH
Confidence 334444455677777766544332 111 11333333333333333233322 233444555554444 34455555
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
-...|...|++++|.+.......-+....+. ..+.+..+.+-|.+.+++|.+- -+..|.+-|-.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~a---------- 178 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQA---------- 178 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHH----------
Confidence 5678899999999999998844333333333 3456777899999999999872 233333333322
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
.|....-.+.+.+|.-+|++|. ..|+..+.+....++...|++++|+.+++.++..+++++.+...++
T Consensus 179 ----------wv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 179 ----------WVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred ----------HHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 2233333567899999999995 5688999999999999999999999999999999999998988888
Q ss_pred HHHHHcCCchHHH-HHHHHHH
Q 038673 386 NIYASAGMWDDVS-RVRRLLK 405 (548)
Q Consensus 386 ~~~~~~g~~~~a~-~~~~~m~ 405 (548)
..-.-.|+-.++. +.+.+.+
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHH
Confidence 8777778765544 4455443
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=9e-05 Score=72.57 Aligned_cols=122 Identities=14% Similarity=0.042 Sum_probs=79.7
Q ss_pred HHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhH
Q 038673 124 ELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKY 203 (548)
Q Consensus 124 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 203 (548)
+|+..+...++++.|.++|+++.+.++.....++..+...++-.+|++++++..+.. +-|...+..-...+.+.++.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 345555566677777777777766666666666677767777777777777666542 2344444445555666777777
Q ss_pred HHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 204 ANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 204 a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
|.++.+++.+..+. +..+|..|..+|.+.|+++.|...++.++
T Consensus 253 AL~iAk~av~lsP~---~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELSPS---EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhCch---hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777666533 66677777777777777777777777665
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.06 E-value=0.00073 Score=65.80 Aligned_cols=121 Identities=13% Similarity=-0.001 Sum_probs=67.5
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTL-VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
+--....+...|++++|+..++.+... .||...| ......+.+.++..+|.+.++.+....+. .....-.+.++
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN---SPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ccHHHHHHHHH
Confidence 333334445556666666666665554 3333333 33444556666666666666666655433 35555556666
Q ss_pred HhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHH
Q 038673 232 YSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGD 278 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 278 (548)
|.+.|++.+|.++++.... .|+..|..|..+|...|+..+|..-..+
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 6666666666666665542 3555666666666666666555544443
No 133
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00037 Score=62.41 Aligned_cols=160 Identities=16% Similarity=0.033 Sum_probs=105.7
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHH
Q 038673 86 SDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTG 159 (548)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~ 159 (548)
.|..+ ..+-..+.-.|+-+....+...... .|....+..+....+.|++.+|...|.+.. .+|...|+.+..+
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 34444 5556666667777776666665432 233344556677777777777777777654 3467777777777
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHH
Q 038673 160 YVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSID 239 (548)
Q Consensus 160 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~ 239 (548)
|.+.|+.++|..-|.+..+.- .-+...++.+...+.-.|+++.|..++......+.. +..+-..|.-.....|+++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a---d~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA---DSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC---chHHHHHHHHHHhhcCChH
Confidence 777787777777777776542 123345566666666777777777777777666544 6677777777777777777
Q ss_pred HHHHHHhcCCC
Q 038673 240 DAYRIFVGMKQ 250 (548)
Q Consensus 240 ~A~~~~~~~~~ 250 (548)
+|.++-..-..
T Consensus 220 ~A~~i~~~e~~ 230 (257)
T COG5010 220 EAEDIAVQELL 230 (257)
T ss_pred HHHhhcccccc
Confidence 77777655443
No 134
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.02 E-value=0.00015 Score=60.36 Aligned_cols=94 Identities=11% Similarity=0.007 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
...-.+...+...|++++|.++|+-.- ..|. ..-|-.|-.+|...|++++|+..+.++..++|+++.++..++.+|..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 344455667778999999999999874 4554 67778888889999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHh
Q 038673 391 AGMWDDVSRVRRLLKM 406 (548)
Q Consensus 391 ~g~~~~a~~~~~~m~~ 406 (548)
.|+.+.|.+.|+....
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999997754
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.0025 Score=56.86 Aligned_cols=188 Identities=13% Similarity=0.141 Sum_probs=139.8
Q ss_pred CCChhHHHHHHHHHHH---CC-CCCCHhh-HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC
Q 038673 163 NAKPREAIEYFERMQY---AG-VETDYVT-LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS 237 (548)
Q Consensus 163 ~g~~~~A~~l~~~m~~---~g-~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~ 237 (548)
..+.++.++++.++.. .| ..|+..+ |-.++-+....|..+.|...++.+...-+ .+..+...-.-.+-..|+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp---~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP---GSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHhhc
Confidence 4567888888888754 34 6677765 44566677788899999999999877653 355554444455666899
Q ss_pred HHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHH
Q 038673 238 IDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDH 314 (548)
Q Consensus 238 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~ 314 (548)
+++|.++++.+.+. |.+++---+...-..|+.-+|++-+.+..+ .+.-|.+.
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-------------------------~F~~D~EA 156 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-------------------------KFMNDQEA 156 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-------------------------HhcCcHHH
Confidence 99999999999864 445666666667778888899988888777 34557888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHH---hcCCHHHHHHHHHHHhhcCCCCc
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQ---IHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
|.-+.+.|...|++++|.-.++++- +.|- +..+..+-..+. ...+.+.+.+.+.+.+++.|.+.
T Consensus 157 W~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 157 WHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 9999999999999999999999985 5665 444455544432 23467889999999999999644
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.98 E-value=0.022 Score=56.39 Aligned_cols=194 Identities=12% Similarity=0.079 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCC---CHHHHHHHHhcCCC----CChhhhHHHHHHHHhcCCHHHHHH
Q 038673 202 KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG---SIDDAYRIFVGMKQ----RNVFSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~ 274 (548)
+++..+++..+..-.. .+..+|..+.+.=-..- +.+.....++++.. .-..+|-..|..-.+..-...|..
T Consensus 310 ~e~~~~yEr~I~~l~~--~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLK--ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 4555666655544333 34555555444322221 23444444444331 122345555555555555666666
Q ss_pred HHHHHHHcCCCC-CHhhHHHHHHHHhhcCC-----------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC---
Q 038673 275 LFGDMVKTETKP-NGVTFIGVLTACSHVGL-----------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--- 339 (548)
Q Consensus 275 l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~-----------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--- 339 (548)
+|.+..+.+..+ +....++++.-++.... ..+|- ++.--...++-+...++-..|..+|++..
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 666666665555 44444455544443332 22221 23334567778888888888888888774
Q ss_pred CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----chhHHHHHHHHHHcCCchHHHH
Q 038673 340 VEPN--GGVWGALLGACQIHRNPEIAQIAANHLFELEPDK----IGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 340 ~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
+.|+ ..+|..+|.--..-|+...+.++-++.....|.+ ...-..+++.|.-.+....-..
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHH
Confidence 2344 5789999998889999999998888877755521 1133445555655555444333
No 137
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.96 E-value=0.0012 Score=69.99 Aligned_cols=132 Identities=9% Similarity=-0.016 Sum_probs=99.9
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CC-eehHHHHHHHHHhCCChHHHHHHHccCCCC---ChhHHHHHH
Q 038673 84 FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RD-VVSWTELIVAYANNGDMESAGGLFNELPLK---DKVAWTAMV 157 (548)
Q Consensus 84 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li 157 (548)
++.+...+-.|.....+.|.+++|..+++...+ |+ ...+..+...+.+.+++++|+..+++.... +....+.+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 566778888888888888888888888888765 43 445667778888888888888888777633 455667777
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038673 158 TGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGF 216 (548)
Q Consensus 158 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 216 (548)
.++.+.|++++|..+|++....+ +-+..++.++..++-..|+.++|...|+.+.+..-
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 78888888888888888887732 33466777888888888888888888888876543
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=0.00013 Score=71.45 Aligned_cols=121 Identities=14% Similarity=0.202 Sum_probs=98.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038673 257 SSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVE 336 (548)
Q Consensus 257 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 336 (548)
.+++..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.++++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--------------------------v~~~LA~v~l~~~~E~~AI~ll~ 224 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--------------------------VAVLLARVYLLMNEEVEAIRLLN 224 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--------------------------HHHHHHHHHHhcCcHHHHHHHHH
Confidence 345666677889999999999998852 43 23446777777888899999998
Q ss_pred hCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 337 KMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 337 ~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+.- ..| +...+......|...++++.|..+++++.+..|++..+|..|+.+|...|++++|+..++.+.
T Consensus 225 ~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 225 EALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 774 334 445555555778999999999999999999999999999999999999999999999988775
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.94 E-value=1.1e-05 Score=47.71 Aligned_cols=31 Identities=29% Similarity=0.695 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGI 48 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 48 (548)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998874
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.93 E-value=0.0001 Score=61.49 Aligned_cols=96 Identities=22% Similarity=0.265 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
.....+...+...|++++|.+.++... ..| +...|..+...+...|+++.|...++...+.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 446667788889999999999998874 445 467777888889999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhCC
Q 038673 391 AGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 391 ~g~~~~a~~~~~~m~~~g 408 (548)
.|++++|.+.++...+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 999999999998886643
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0028 Score=56.54 Aligned_cols=184 Identities=16% Similarity=0.122 Sum_probs=134.3
Q ss_pred CCCchHHHHHHHHHHH---CC-CCCChhh-HHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCh
Q 038673 30 QGHLKDSISLYCSMRR---EG-IGPVSFT-LSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFL 104 (548)
Q Consensus 30 ~g~~~~A~~~~~~m~~---~g-~~p~~~~-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 104 (548)
..++++.++++..+.. .| ..|+..+ |..++-+....|+.+.|..++.++... ++.+..+...-.-.+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 4678999999988876 34 5566654 556666777788999999999998776 555555544444445678999
Q ss_pred HHHHHHHccCCCC---CeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 038673 105 GCSRKVFDEMPER---DVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQY 178 (548)
Q Consensus 105 ~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 178 (548)
++|.++++.+.+. |.+++---+...-..|+.-+|++-+.... ..|...|.-+...|...|++++|.-.++++.-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999998863 45566666667777787778877666554 34889999999999999999999999999886
Q ss_pred CCCCCCHh-hHHHHHHHH---HccCChhHHHHHHHHHHHcCCC
Q 038673 179 AGVETDYV-TLVGVISAC---AQLGVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 179 ~g~~p~~~-t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~ 217 (548)
. .|... .+..+...+ +...+++.+.++|.+.++....
T Consensus 183 ~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 183 I--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred c--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 4 44433 333444433 3344678888999988886543
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.90 E-value=0.00095 Score=71.65 Aligned_cols=216 Identities=12% Similarity=0.067 Sum_probs=128.6
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHH-HHHHHhhccCCcHHHHHHHHHHHHhC----------
Q 038673 14 YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLS-ALFKACTEVLDVSLGQQIHAQTILLG---------- 82 (548)
Q Consensus 14 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~a~~~~~~~~~a~~~~~~~~~~~---------- 82 (548)
+.+...|-.|+..|...+++++|.++.+.-.+. .|+...+- .+.-.+.+.++...+..+ .+...-
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 446678999999999999999999999976663 56554432 222244455554444444 222221
Q ss_pred -------CCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhH
Q 038673 83 -------GFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVA 152 (548)
Q Consensus 83 -------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~ 152 (548)
.+..+...+..|..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... ++++|++++.+.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA------- 175 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA------- 175 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH-------
Confidence 0112225556666666666777777777666654 3455666666666666 666666655432
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCCChHhHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGS-GFGPINNVVVGSALIDM 231 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~~~li~~ 231 (548)
+..|...+++.++.++|.++... .|+ +++.-.++.+.+..+ +.. .-..++-.|-..
T Consensus 176 ----V~~~i~~kq~~~~~e~W~k~~~~--~~~---------------d~d~f~~i~~ki~~~~~~~--~~~~~~~~l~~~ 232 (906)
T PRK14720 176 ----IYRFIKKKQYVGIEEIWSKLVHY--NSD---------------DFDFFLRIERKVLGHREFT--RLVGLLEDLYEP 232 (906)
T ss_pred ----HHHHHhhhcchHHHHHHHHHHhc--Ccc---------------cchHHHHHHHHHHhhhccc--hhHHHHHHHHHH
Confidence 22355555666666666666654 222 222223333333332 333 355666777788
Q ss_pred HhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHH
Q 038673 232 YSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFA 264 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 264 (548)
|-+.++++++..+|..+.+ .|.....-++.+|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 8888888888888888774 34455666666665
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.88 E-value=0.0003 Score=58.66 Aligned_cols=103 Identities=9% Similarity=-0.008 Sum_probs=68.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHH
Q 038673 187 TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGF 263 (548)
Q Consensus 187 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 263 (548)
....+...+...|+.++|...++.+...+.. +...+..+...|.+.|++++|...|+...+ .+...|..+...|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3445555666677777777777777665533 667777777777777777777777776543 3445566666677
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 038673 264 AMHGRAHAAIQLFGDMVKTETKPNGVTFIGV 294 (548)
Q Consensus 264 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 294 (548)
...|++++|+..|++..+ ..|+...+..+
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 124 (135)
T TIGR02552 96 LALGEPESALKALDLAIE--ICGENPEYSEL 124 (135)
T ss_pred HHcCCHHHHHHHHHHHHH--hccccchHHHH
Confidence 777888888888877776 45665554433
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0065 Score=54.67 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=96.9
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC-ChhhhHHHHHHHHh--
Q 038673 189 VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR-NVFSYSSMILGFAM-- 265 (548)
Q Consensus 189 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~-- 265 (548)
..-...|.+.|++++|.+..... .+......=+..+.|..+.+-|.+.+++|.+- +-.+.+.|..++.+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~--------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la 183 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLG--------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLA 183 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhcc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh
Confidence 33344566777777777665441 14444444455666667777777777777763 33455555555443
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CC
Q 038673 266 --HGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VE 341 (548)
Q Consensus 266 --~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~ 341 (548)
.+...+|.-+|++|-++ ..|++.+.+-+..+....|++++|..++++.- ..
T Consensus 184 ~ggek~qdAfyifeE~s~k-------------------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEK-------------------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred ccchhhhhHHHHHHHHhcc-------------------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 34577778888887652 34445556666666667788888888887763 22
Q ss_pred CChhHHHHHHHH-HHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 342 PNGGVWGALLGA-CQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 342 p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
.++.+...++-. .....+.+--.+...++...+|.++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 346666555543 4444455666777788888888765
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.85 E-value=2.2e-05 Score=46.44 Aligned_cols=31 Identities=26% Similarity=0.574 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTET 284 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 284 (548)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988764
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00036 Score=53.43 Aligned_cols=92 Identities=22% Similarity=0.236 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAG 392 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 392 (548)
+..+...+...|++++|...+++.. ..|+ ...+..+...+...++++.|...++...+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 5567778888999999999998874 4454 4667777788889999999999999999999998889999999999999
Q ss_pred CchHHHHHHHHHHh
Q 038673 393 MWDDVSRVRRLLKM 406 (548)
Q Consensus 393 ~~~~a~~~~~~m~~ 406 (548)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999999987754
No 147
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0072 Score=59.65 Aligned_cols=348 Identities=12% Similarity=0.043 Sum_probs=192.1
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCCh
Q 038673 26 GYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSD-LYVGNTMIGMYVKCGFL 104 (548)
Q Consensus 26 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 104 (548)
+....|+++.|+..|.+.+.-. ++|...|+.-..+++..|++++|.+=-...++. .|+ ..-|+-+..++.-.|++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcccH
Confidence 3456799999999999888643 347777888888999999999888777666664 455 45678888888888999
Q ss_pred HHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHH-HHHHccCCCCChhHHHHHH-----HHHHHCCChhHHHHHHHH
Q 038673 105 GCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESA-GGLFNELPLKDKVAWTAMV-----TGYVQNAKPREAIEYFER 175 (548)
Q Consensus 105 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A-~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~ 175 (548)
++|...|.+-.+ | |...++.+..++ ..+.+ .+.|. ++..|..+. +.+...-.+..-++.+..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 999999988765 2 444556666655 11111 11111 111111111 111111111111111000
Q ss_pred HHH-CCCCCCHhhHHHHHHHHHccCChhHHHHHH-HHH----------HHcCCCCC-----------ChHhHHHHHHHHH
Q 038673 176 MQY-AGVETDYVTLVGVISACAQLGVIKYANWVC-EIA----------EGSGFGPI-----------NNVVVGSALIDMY 232 (548)
Q Consensus 176 m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~-~~~----------~~~~~~p~-----------~~~~~~~~li~~y 232 (548)
-.. .+...+ ...++.+.......+.....- ..+ ......|. .-..-...+.++.
T Consensus 158 ~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 158 NPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred CcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 000 000000 000111111000000000000 000 00000000 0122345567777
Q ss_pred hcCCCHHHHHHHHhcCCC--CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCc
Q 038673 233 SKCGSIDDAYRIFVGMKQ--RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSP 310 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p 310 (548)
-+..+++.|.+-+....+ .++.-++....+|...|.+.+....-....+.|.. ...-|+.+-.++.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~--------- 304 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL--------- 304 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh---------
Confidence 777888888888876654 34444666667888888888777776666555422 112233333333332
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC--------------------------C-CCCCh-hHHHHHHHHHHhcCCHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKM--------------------------P-VEPNG-GVWGALLGACQIHRNPEI 362 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m--------------------------~-~~p~~-~~~~~ll~~~~~~~~~~~ 362 (548)
..+|.+.++++.|...|++. . +.|.. .-...-.+.+.+.|++..
T Consensus 305 --------g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 305 --------GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred --------hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 23344444444444444432 1 33442 112222356788999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 363 AQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 363 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
|...+.+++..+|+++..|...+-+|.+.|.+..|+.=.+...+.
T Consensus 377 Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998865555443
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.67 E-value=0.0023 Score=54.03 Aligned_cols=125 Identities=13% Similarity=0.092 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY---VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
.|..++..+ ..++...+...++.+.... +.+. ...-.+...+...|++++|...|+.+......|.........|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344455554 3677777777777776652 2221 1222344556677777777777777777664321223455556
Q ss_pred HHHHhcCCCHHHHHHHHhcCCCC--ChhhhHHHHHHHHhcCCHHHHHHHHHH
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQR--NVFSYSSMILGFAMHGRAHAAIQLFGD 278 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~ 278 (548)
...+...|++++|...++....+ ....+......|...|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777778888887777665432 223445555667777888888777765
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.61 E-value=0.00088 Score=54.25 Aligned_cols=96 Identities=14% Similarity=0.004 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---chhHHHH
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDK---IGNYIIL 384 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 384 (548)
.++-.++..+.+.|++++|.+.|+++. ..|+ ...+..+..++...|+++.|...++.+....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456677888999999999999998884 3344 2455667788999999999999999999988875 4578889
Q ss_pred HHHHHHcCCchHHHHHHHHHHhCC
Q 038673 385 SNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 385 ~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
+.++...|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999997754
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.00065 Score=62.11 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=83.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V 340 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 340 (548)
-..+.+++.+|+..|.+.++ +.|+..+| |..-..+|.+.|.++.|++--+... +
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVy-----------------------ycNRAAAy~~Lg~~~~AVkDce~Al~i 144 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVY-----------------------YCNRAAAYSKLGEYEDAVKDCESALSI 144 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchH-----------------------HHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 35678999999999999998 67776655 7778889999999999988776653 6
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 341 EPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 341 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
.|. ..+|..|-.++...|++++|++.|++.++++|++......|-.
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 666 6789999999999999999999999999999999855444443
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.55 E-value=0.0026 Score=53.70 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=23.3
Q ss_pred HHHHHhCCChHHHHHHHccCCCC--ChhHHHHHHHHHHHCCChhHHHHHHHH
Q 038673 126 IVAYANNGDMESAGGLFNELPLK--DKVAWTAMVTGYVQNAKPREAIEYFER 175 (548)
Q Consensus 126 i~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~ 175 (548)
...+...|++++|+..++....+ ....+......|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444443322 223344444555555555555555543
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.53 E-value=0.0016 Score=52.70 Aligned_cols=107 Identities=17% Similarity=0.093 Sum_probs=80.8
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
.++..+...+...|++++|.+.|.++... .|+.. .....+..+...+.+.|++++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~--------------------~~~~~~~~l~~~~~~~~~~~~A~~ 60 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK--YPKST--------------------YAPNAHYWLGEAYYAQGKYADAAK 60 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcc--------------------ccHHHHHHHHHHHHhhccHHHHHH
Confidence 34566777788899999999999998874 23311 112345668888999999999999
Q ss_pred HHHhCC-CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHH
Q 038673 334 MVEKMP-VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYI 382 (548)
Q Consensus 334 ~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 382 (548)
.++++. ..|+ ..++..+..++...|+.+.|...++++++..|+++.+..
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 998874 3344 456777778889999999999999999999998875443
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.50 E-value=0.00031 Score=50.64 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=57.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC-CchHHHHHHHHHHh
Q 038673 343 NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAG-MWDDVSRVRRLLKM 406 (548)
Q Consensus 343 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 406 (548)
++.+|..+-..+...|++++|+..|++.++.+|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678888888999999999999999999999999999999999999999 79999999887754
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.46 E-value=0.00011 Score=55.58 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=64.3
Q ss_pred cCCHHHHHHHHHhCC-CCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHH
Q 038673 325 AGCLEEALKMVEKMP-VEP---NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRV 400 (548)
Q Consensus 325 ~g~~~~A~~~~~~m~-~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 400 (548)
.|++++|+.+++++. ..| +...|-.+..++.+.|+++.|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 588999999999884 234 455666678999999999999999999 777887777777889999999999999999
Q ss_pred HHH
Q 038673 401 RRL 403 (548)
Q Consensus 401 ~~~ 403 (548)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.42 E-value=0.003 Score=62.12 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=87.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 260 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
...+...|++++|+++|++.++ ..|+ +...|..+..+|.+.|++++|+..+++..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~-----------------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al 63 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPN-----------------------NAELYADRAQANIKLGNFTEAVADANKAI 63 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCC-----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456778999999999999988 4555 33557788889999999999999998884
Q ss_pred -CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 340 -VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 340 -~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
+.|+ ...|..+..+|...|+++.|...++++++++|+++.....+..+..+
T Consensus 64 ~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 64 ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5564 67788888899999999999999999999999998777766555443
No 156
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.42 E-value=0.003 Score=52.75 Aligned_cols=104 Identities=9% Similarity=0.003 Sum_probs=76.4
Q ss_pred HccCC-CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCC
Q 038673 142 FNELP-LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPIN 220 (548)
Q Consensus 142 f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 220 (548)
+..+. +.+....-.+...+.+.|++++|..+|+-+.... +-+..-|..|..++-..|++++|...|..+....+.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d--- 101 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID--- 101 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---
Confidence 44444 4455555666667778888888888888887643 224445566777777888888888888888887755
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
++..+..+..+|.+.|+.+.|.+.|+...
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 78888888888888888888888887653
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.41 E-value=0.00049 Score=48.93 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 351 LGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 351 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
...+...|+++.|+..++.+++..|+++..+..++.++...|++++|..+++++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888764
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.39 E-value=0.001 Score=65.35 Aligned_cols=90 Identities=13% Similarity=0.052 Sum_probs=79.3
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 038673 319 VDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDD 396 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 396 (548)
...+...|++++|++.|++.. ..|+ ...|..+..++...|+++.|...++++++++|+++..|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 456678899999999999884 5565 66777777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 038673 397 VSRVRRLLKMTG 408 (548)
Q Consensus 397 a~~~~~~m~~~g 408 (548)
|...+++..+..
T Consensus 89 A~~~~~~al~l~ 100 (356)
T PLN03088 89 AKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhC
Confidence 999999887543
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.38 E-value=0.0017 Score=49.55 Aligned_cols=91 Identities=20% Similarity=0.106 Sum_probs=47.5
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
|..+...+...|++++|...+++..+.. +.+...+..+...+...++++.|.+.++...+.... +..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD---NAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---chhHHHHHHHHH
Confidence 3445555556666666666666655432 222234444555555556666666666655554432 334445555555
Q ss_pred hcCCCHHHHHHHHhc
Q 038673 233 SKCGSIDDAYRIFVG 247 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~ 247 (548)
...|+++.|...+..
T Consensus 79 ~~~~~~~~a~~~~~~ 93 (100)
T cd00189 79 YKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHhHHHHHHHHHH
Confidence 555555555555444
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.36 E-value=0.15 Score=48.93 Aligned_cols=282 Identities=15% Similarity=0.081 Sum_probs=140.0
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGM 97 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 97 (548)
+||..+...-.+.|+.+-|..+++ ..|+..-= +..+...++.+.| +...++.| .||. +|..|+.+
T Consensus 1 IS~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~~q---VplLL~m~e~e~A---L~kAi~Sg--D~DL-i~~vLl~L 65 (319)
T PF04840_consen 1 ISYAEIARKAYEEGRPKLATKLLE------LEPRASKQ---VPLLLKMGEDELA---LNKAIESG--DTDL-IYLVLLHL 65 (319)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHH------cCCChHHH---HHHHhcCCchHHH---HHHHHHcC--CccH-HHHHHHHH
Confidence 367777777788899998888764 23443221 2233445555555 44566665 3332 34444443
Q ss_pred HHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 038673 98 YVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQ 177 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 177 (548)
--+. ...+-..++...+ .+ ..+...|++..+.+.-..+|.+-..........+-.++.. .+.++-...+....
T Consensus 66 ~~~l-~~s~f~~il~~~p----~a-~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~-~~~~~~~~~L~~a~ 138 (319)
T PF04840_consen 66 KRKL-SLSQFFKILNQNP----VA-SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ-KDVEEKISFLKQAQ 138 (319)
T ss_pred HHhC-CHHHHHHHHHhCc----ch-HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 3222 2222222222211 11 3344556666666665555554332222222222223222 23333222222221
Q ss_pred HC-CCCCCHhhHHHHHHHHHccCChhHHHHHHHHH----HHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC
Q 038673 178 YA-GVETDYVTLVGVISACAQLGVIKYANWVCEIA----EGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN 252 (548)
Q Consensus 178 ~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 252 (548)
+. +-..+......++ ++-.++++.- .+.+.. ....+.+..+.-+...|+...|.++-.+..-|+
T Consensus 139 ~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~--f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~d 207 (319)
T PF04840_consen 139 KLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTN--FVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPD 207 (319)
T ss_pred HHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccc--hhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcH
Confidence 10 0001111111111 1111222111 011111 112233344555666788888888888887788
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
-.-|-..+.+++..++|++-..+... .-. +.-|...++.+.+.|+..+|.
T Consensus 208 krfw~lki~aLa~~~~w~eL~~fa~s----kKs--------------------------PIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 208 KRFWWLKIKALAENKDWDELEKFAKS----KKS--------------------------PIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhC----CCC--------------------------CCChHHHHHHHHHCCCHHHHH
Confidence 88888888888888888776665332 111 123566677777777888888
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 038673 333 KMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANH 369 (548)
Q Consensus 333 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 369 (548)
.++.+++ +..-+..|.+.|++.+|.+..-+
T Consensus 258 ~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 258 KYIPKIP-------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHhCC-------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777753 13344556677777776655443
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.33 E-value=0.0038 Score=59.19 Aligned_cols=131 Identities=15% Similarity=0.223 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHH---H-HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMIL---G-FAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTAC 298 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 298 (548)
.+|..++...-+.+.++.|+++|.+..+....+|...+. . |...++.+.|..+|+...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---------------- 65 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---------------- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----------------
Confidence 356666777777777777777777776543333333322 2 22246666688888887763
Q ss_pred hhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038673 299 SHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFEL 373 (548)
Q Consensus 299 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 373 (548)
+..+...|...++.+.+.|+.+.|..+|++.- .-|. ...|...+..-.+.|+.+....+.+++.+.
T Consensus 66 ---------f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 66 ---------FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp ---------HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22244557777888888888888888888764 2233 358999999889999999999999999998
Q ss_pred CCCCc
Q 038673 374 EPDKI 378 (548)
Q Consensus 374 ~p~~~ 378 (548)
.|++.
T Consensus 137 ~~~~~ 141 (280)
T PF05843_consen 137 FPEDN 141 (280)
T ss_dssp TTTS-
T ss_pred hhhhh
Confidence 88755
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.31 E-value=0.0055 Score=53.52 Aligned_cols=91 Identities=13% Similarity=-0.003 Sum_probs=67.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD--YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGS 226 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 226 (548)
....+..+...+...|++++|+..|++.......++ ...+..+...+.+.|++++|...+..+.+.... +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---QPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHH
Confidence 455677778888888999999999888876533222 346777778888889999999998888876543 677777
Q ss_pred HHHHHHhcCCCHHHHH
Q 038673 227 ALIDMYSKCGSIDDAY 242 (548)
Q Consensus 227 ~li~~y~~~g~~~~A~ 242 (548)
.+...|...|+...+.
T Consensus 111 ~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 111 NIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHcCChHhHh
Confidence 7788888777755544
No 163
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0099 Score=56.83 Aligned_cols=273 Identities=12% Similarity=-0.038 Sum_probs=138.3
Q ss_pred HhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-C--CeehHHHHHHHHHhCCChHH
Q 038673 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-R--DVVSWTELIVAYANNGDMES 137 (548)
Q Consensus 61 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~--~~~~~~~li~~~~~~g~~~~ 137 (548)
++.+..++..|...+...++.. +.+..-|..-+..|.-.|++++|.--.+.-.+ . ......-.-+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHH
Confidence 3445556677777777777764 55566666666666666777766544433222 1 12222333344444455555
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCCHhhHHHHHH-HHHccCChhHHHHHHHHHHHcC
Q 038673 138 AGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETDYVTLVGVIS-ACAQLGVIKYANWVCEIAEGSG 215 (548)
Q Consensus 138 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~ 215 (548)
|.+.|+ +...+ ....|+..++....... +|.-.++-.+-. .+...|+.+.|.++-..+.+..
T Consensus 136 A~~~~~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 136 AEEKLK-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred HHHHhh-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence 555544 11111 11122222222222211 233334433322 2355677777777766666654
Q ss_pred CCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhh---------------hHHHHHHHHhcCCHHHHHHHHHHHH
Q 038673 216 FGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFS---------------YSSMILGFAMHGRAHAAIQLFGDMV 280 (548)
Q Consensus 216 ~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---------------~~~li~~~~~~g~~~~A~~l~~~m~ 280 (548)
.. +....-.=..++--.++.+.|...|++...-|+.. |..=-.-..++|++..|.+.|.+.+
T Consensus 200 ~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 200 AT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred cc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 33 32222222223334566777777777766433221 1111223455677777777777766
Q ss_pred HcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChh-HHHHHH--HHHHhc
Q 038673 281 KTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGG-VWGALL--GACQIH 357 (548)
Q Consensus 281 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-~~~~ll--~~~~~~ 357 (548)
. +.|+ ..+|+...|........+.|++++|+.--++.. +-|.. ++..+. .++...
T Consensus 277 ~--idP~-------------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 277 N--IDPS-------------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred c--CCcc-------------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHH
Confidence 5 5555 335555556666666666777777666554443 33322 222222 334555
Q ss_pred CCHHHHHHHHHHHhhcCCC
Q 038673 358 RNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 358 ~~~~~a~~~~~~~~~~~p~ 376 (548)
++++.|.+-++...+...+
T Consensus 335 e~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 6666666666666664433
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.24 E-value=0.0087 Score=48.15 Aligned_cols=109 Identities=18% Similarity=0.083 Sum_probs=70.8
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHh
Q 038673 156 MVTGYVQNAKPREAIEYFERMQYAGVETD--YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYS 233 (548)
Q Consensus 156 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~ 233 (548)
+..++-..|+.++|+.+|++....|+..+ ...+..+.+.+...|++++|..+++......+.+..+..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566778888888888888888776554 2345667777888888888888888877654331123344444455667
Q ss_pred cCCCHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 038673 234 KCGSIDDAYRIFVGMKQRNVFSYSSMILGFA 264 (548)
Q Consensus 234 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 264 (548)
..|+.++|...+-....++...|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888877766554444444444444443
No 165
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.22 E-value=0.0055 Score=47.58 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCChhhHHHHHHHhhccC--------CcHHHHHHHHHHHHhCCCCCChh
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRREGI-GPVSFTLSALFKACTEVL--------DVSLGQQIHAQTILLGGFTSDLY 89 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~a~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 89 (548)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..+ +.|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~-lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNK-LKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhc-cCCcHH
Confidence 344556667777999999999999999999 899999999999977543 2345788999999998 999999
Q ss_pred HHHHHHHHHHH
Q 038673 90 VGNTMIGMYVK 100 (548)
Q Consensus 90 ~~~~li~~~~~ 100 (548)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.20 E-value=0.0071 Score=57.32 Aligned_cols=139 Identities=12% Similarity=0.003 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISA-CAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.-.. +...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~---~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS---DPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---CHHHHHHHH
Confidence 478888988888888999999999998543 2233334333333 33356777899999999887544 889999999
Q ss_pred HHHhcCCCHHHHHHHHhcCCC--C----ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQ--R----NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
+.+.+.|+.+.|+.+|++... + -...|...+.-=.+.|+.+.+.++.+++.+ .-|+..++..++
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~ 147 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFS 147 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHH
Confidence 999999999999999999875 2 335899999999999999999999999988 345544433333
No 167
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.18 E-value=0.00057 Score=49.07 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=40.5
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
...|+++.|...++++.+.+|++...+..++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788888888888888888888888888888888888888888776543
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.17 E-value=0.0062 Score=53.18 Aligned_cols=130 Identities=12% Similarity=0.036 Sum_probs=79.6
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGPV--SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTM 94 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 94 (548)
...|..+...+...|++++|...|++....+..+. ...+..+...+...|+++.|...+...++.. +.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 34567777777788888888888888876432222 3466777777788888888888888887764 4456666677
Q ss_pred HHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCC
Q 038673 95 IGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAK 165 (548)
Q Consensus 95 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 165 (548)
..+|...|+...+..-++.. ...+++|.+.+.+....+...|..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCc
Confidence 77777766643333221110 0114555555555554444445555555554443
No 169
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.17 E-value=0.31 Score=48.65 Aligned_cols=361 Identities=13% Similarity=0.126 Sum_probs=190.6
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHH
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNT 93 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (548)
-|+.+|+.||+-+-.. .++++.+.++++.. +-| ....|..-+..-....+++....+|.+.+..- .++..|..
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW~l 91 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLWKL 91 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHHHH
Confidence 3788999999976555 99999999999986 445 56678888899899999999999999998864 45777777
Q ss_pred HHHHHHH-cCChHHH----HHHHccCCC------CCeehHHHHHHH---------HHhCCChHHHHHHHccCCC-C--C-
Q 038673 94 MIGMYVK-CGFLGCS----RKVFDEMPE------RDVVSWTELIVA---------YANNGDMESAGGLFNELPL-K--D- 149 (548)
Q Consensus 94 li~~~~~-~g~~~~A----~~~~~~m~~------~~~~~~~~li~~---------~~~~g~~~~A~~~f~~m~~-~--~- 149 (548)
.++---+ .|+...+ .+.|+-..+ ..-..|+..+.- |..+.+++...+++.++.. | +
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 7764332 2333332 222322221 233446655543 4555677777778877752 2 1
Q ss_pred ------hhHHHHHHHHH-------HHCCChhHHHHHHHHHHH--CCCCCCHhh---------------HHHHHHHHHccC
Q 038673 150 ------KVAWTAMVTGY-------VQNAKPREAIEYFERMQY--AGVETDYVT---------------LVGVISACAQLG 199 (548)
Q Consensus 150 ------~~~~~~li~~~-------~~~g~~~~A~~l~~~m~~--~g~~p~~~t---------------~~~ll~~~~~~g 199 (548)
-..|..=|... -+...+..|.++++++.. .|+.-+..+ |-.+|.- -+..
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcC
Confidence 11222111111 123345567777776643 333222211 1112211 1111
Q ss_pred Chh---------HHHHHHHHH-HHcCCCCCChHhHHHH-------HHHHHhcCCCH-------HHHHHHHhcCCC----C
Q 038673 200 VIK---------YANWVCEIA-EGSGFGPINNVVVGSA-------LIDMYSKCGSI-------DDAYRIFVGMKQ----R 251 (548)
Q Consensus 200 ~~~---------~a~~~~~~~-~~~~~~p~~~~~~~~~-------li~~y~~~g~~-------~~A~~~~~~~~~----~ 251 (548)
.+. ...-+|++. .-.+..| .+|-- .-+.+...|+. +++..++++... .
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~p----eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHP----EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 111111111 1112221 11111 11122223332 233333333221 1
Q ss_pred ChhhhHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCH
Q 038673 252 NVFSYSSMILGFAMH---GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCL 328 (548)
Q Consensus 252 ~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 328 (548)
+...|..+..---.. .+.+.....+++++.. ..+.|+ -+|..++..--|..-+
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~-----------------------~~~~~t-Lv~~~~mn~irR~eGl 382 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI-----------------------EDIDLT-LVYCQYMNFIRRAEGL 382 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh-----------------------hccCCc-eehhHHHHHHHHhhhH
Confidence 112222221110000 1123333334333321 111222 2466777777777777
Q ss_pred HHHHHHHHhCC---CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 038673 329 EEALKMVEKMP---VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLL 404 (548)
Q Consensus 329 ~~A~~~~~~m~---~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 404 (548)
..|..+|.+.+ ..+ ++.+.++++.-+ ..++.+.|.++|+..++..++++..-...+..+...++-..+..+|++.
T Consensus 383 kaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 383 KAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERV 461 (656)
T ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 88888887774 223 455555555433 3567788888888888877777766666777777778888888888887
Q ss_pred HhCCCcc
Q 038673 405 KMTGLKK 411 (548)
Q Consensus 405 ~~~g~~~ 411 (548)
...++.+
T Consensus 462 l~s~l~~ 468 (656)
T KOG1914|consen 462 LTSVLSA 468 (656)
T ss_pred HhccCCh
Confidence 7765543
No 170
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.16 E-value=0.0077 Score=59.57 Aligned_cols=122 Identities=16% Similarity=0.074 Sum_probs=91.7
Q ss_pred CCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC----CChhh
Q 038673 180 GVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ----RNVFS 255 (548)
Q Consensus 180 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~ 255 (548)
+.+.+...+..++..+....+++.+..++-......-.-..-..+..+++..|.+.|..+.+..++..=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556677777788888777888888877776654211002344556888888888888888888876553 78888
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhc
Q 038673 256 YSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301 (548)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 301 (548)
+|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888777776
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.15 E-value=0.0013 Score=46.67 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=51.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 318 MVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 318 li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
+...+.+.|++++|.+.|++.. ..|+ ...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567889999999999999884 5575 77788888999999999999999999999999874
No 172
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.15 E-value=0.0074 Score=46.88 Aligned_cols=81 Identities=10% Similarity=0.036 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHccC--------ChhHHHHHHHHHHHcCCCCCChH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETDYVTLVGVISACAQLG--------VIKYANWVCEIAEGSGFGPINNV 222 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~ 222 (548)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..++.| +.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP--~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKP--ND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCC--cH
Confidence 445566777777999999999999999999 999999999999877653 2345677888888888886 88
Q ss_pred hHHHHHHHHHhc
Q 038673 223 VVGSALIDMYSK 234 (548)
Q Consensus 223 ~~~~~li~~y~~ 234 (548)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999988887764
No 173
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.11 E-value=0.0015 Score=47.57 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=49.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 352 GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
..+.+.++++.|.++++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788899999999999999999999999999999999999999999998887543
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.10 E-value=0.00095 Score=50.33 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=19.2
Q ss_pred CChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHccCChhHHHHHHHH
Q 038673 164 AKPREAIEYFERMQYAGV-ETDYVTLVGVISACAQLGVIKYANWVCEI 210 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 210 (548)
|+++.|+.+|+++..... .|+...+..+..++.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555555555544321 11222222344444444444444444444
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.09 E-value=0.058 Score=51.31 Aligned_cols=213 Identities=14% Similarity=0.124 Sum_probs=116.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-----hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHH
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRREGIGPV-----SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNT 93 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (548)
.|+.....|-..|++++|.+.|.+....-...+ ...|......+ +..+++.|.. .+..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~----------------~~~~ 99 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIE----------------CYEK 99 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHH----------------HHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHH----------------HHHH
Confidence 466666777777778877777776644110000 01122222222 1123333333 3444
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhC-CChHHHHHHHccCC-------CC--ChhHHHHHHHHHHHC
Q 038673 94 MIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANN-GDMESAGGLFNELP-------LK--DKVAWTAMVTGYVQN 163 (548)
Q Consensus 94 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~f~~m~-------~~--~~~~~~~li~~~~~~ 163 (548)
.+..|...|++..|-+.+ ..+...|-.. |++++|.+.|.+.. .+ -...+..+...+.+.
T Consensus 100 A~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 455666666666665553 3344555555 66666666655542 11 123566778889999
Q ss_pred CChhHHHHHHHHHHHCCCC-----CCHh-hHHHHHHHHHccCChhHHHHHHHHHHHcC--CCCCChHhHHHHHHHHHhc-
Q 038673 164 AKPREAIEYFERMQYAGVE-----TDYV-TLVGVISACAQLGVIKYANWVCEIAEGSG--FGPINNVVVGSALIDMYSK- 234 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~~~li~~y~~- 234 (548)
|++++|.++|++....-.. .+.. .|...+-++...|+...|.+.++...... +...........|+.+|-.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 9999999999988764322 2222 22333445566789999999998876543 3311234566677777765
Q ss_pred -CCCHHHHHHHHhcCCCCChhhhHHH
Q 038673 235 -CGSIDDAYRIFVGMKQRNVFSYSSM 259 (548)
Q Consensus 235 -~g~~~~A~~~~~~~~~~~~~~~~~l 259 (548)
...+++|..-|+.+.+-|..--..|
T Consensus 249 D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp -CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred CHHHHHHHHHHHcccCccHHHHHHHH
Confidence 3457888888888887665444333
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.08 E-value=0.011 Score=51.39 Aligned_cols=81 Identities=7% Similarity=-0.146 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET--DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
...|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...+..+...... ....+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~---~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF---LPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHHHHHH
Confidence 4566777777778888888888888776543222 1246677777778888888888888877765433 4555666
Q ss_pred HHHHHh
Q 038673 228 LIDMYS 233 (548)
Q Consensus 228 li~~y~ 233 (548)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 666666
No 177
>PRK15331 chaperone protein SicA; Provisional
Probab=97.05 E-value=0.014 Score=49.13 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=75.8
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 038673 319 VDLLGRAGCLEEALKMVEKMP-VE-PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDD 396 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 396 (548)
..-+-..|++++|..+|+-+- .. -+..-|..|-.+|...++++.|...|.....+.+++|..+...+.+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 334457899999999998774 22 3466677888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 038673 397 VSRVRRLLKM 406 (548)
Q Consensus 397 a~~~~~~m~~ 406 (548)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.05 E-value=0.0021 Score=58.90 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=76.6
Q ss_pred HHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHH
Q 038673 320 DLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDV 397 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 397 (548)
.-+.+.+++++|+..|.+.- +.|+ ++.|..--.+|.+.|.++.|.+-.+..+.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34567899999999998874 6665 666677778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 038673 398 SRVRRLLKM 406 (548)
Q Consensus 398 ~~~~~~m~~ 406 (548)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999887654
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.02 E-value=0.097 Score=48.38 Aligned_cols=55 Identities=7% Similarity=-0.150 Sum_probs=26.2
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHh
Q 038673 192 ISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFV 246 (548)
Q Consensus 192 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~ 246 (548)
..-|.+.|.+.-|..-++.+++.-+.-.........++.+|.+.|..++|.++..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3344455555555555555544322211334444455555555555555555443
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.01 E-value=0.012 Score=51.18 Aligned_cols=92 Identities=14% Similarity=0.001 Sum_probs=63.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC--ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGP--VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTM 94 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 94 (548)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++..++.. +.....++.+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 3457777777888888888888888887643222 22467777778888888888888888887753 4445566666
Q ss_pred HHHHH-------HcCChHHHHHH
Q 038673 95 IGMYV-------KCGFLGCSRKV 110 (548)
Q Consensus 95 i~~~~-------~~g~~~~A~~~ 110 (548)
...|. +.|+++.|...
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHH
Confidence 66666 55565544444
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.008 Score=55.45 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQI---HRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
|...|-.|...|.+.|+++.|..-|.+.. +.| ++..+..+-.++.. .....++..+++++++++|.++.+...|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 67889999999999999999999998774 444 46666666655433 33568899999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHhCCCccCC
Q 038673 386 NIYASAGMWDDVSRVRRLLKMTGLKKNP 413 (548)
Q Consensus 386 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 413 (548)
..+...|++.+|...++.|.+..-..+|
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999876654333
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.93 E-value=0.056 Score=55.77 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
..|..+.-.....|++++|...+++.. +.|+...|..+...+...|+.++|...++++..++|.++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 446656555556788888888888774 6778777777778888888888888888888888888773
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.91 E-value=0.033 Score=57.41 Aligned_cols=140 Identities=12% Similarity=0.022 Sum_probs=99.0
Q ss_pred CCChhHHHHHHHHHHHC--C---ChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHcc---C-----ChhHHHHHHHHHH
Q 038673 147 LKDKVAWTAMVTGYVQN--A---KPREAIEYFERMQYAGVETDY-VTLVGVISACAQL---G-----VIKYANWVCEIAE 212 (548)
Q Consensus 147 ~~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~---g-----~~~~a~~~~~~~~ 212 (548)
..|...|...+++.... + ....|..+|++..+. .||. ..+..+..++... + ++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45788999998875443 2 366899999999875 5654 3344333332211 1 2233444444444
Q ss_pred HcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC--CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 038673 213 GSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK--QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVT 290 (548)
Q Consensus 213 ~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 290 (548)
.....| .+..++.++.-.+...|++++|...|++.. .++...|..+...+...|+.++|.+.+++... +.|...|
T Consensus 412 al~~~~-~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 412 ALPELN-VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred hcccCc-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 433334 466888888888888899999999999987 46777888899999999999999999999987 6777666
Q ss_pred H
Q 038673 291 F 291 (548)
Q Consensus 291 ~ 291 (548)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 5
No 184
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.86 E-value=0.0008 Score=40.46 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=30.1
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 038673 367 ANHLFELEPDKIGNYIILSNIYASAGMWDDVS 398 (548)
Q Consensus 367 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 398 (548)
+++.++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.85 E-value=0.002 Score=46.23 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=51.8
Q ss_pred HHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 323 GRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 323 ~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
...|++++|+++|+++- ..| +...+..+..++...|++++|...++++...+|+++..+..+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 46899999999999884 456 5777778889999999999999999999999999875555444
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.068 Score=48.18 Aligned_cols=173 Identities=14% Similarity=0.056 Sum_probs=119.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCCC--C--------hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 038673 121 SWTELIVAYANNGDMESAGGLFNELPLK--D--------KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVG 190 (548)
Q Consensus 121 ~~~~li~~~~~~g~~~~A~~~f~~m~~~--~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 190 (548)
.|+.+++.+.-..-+++-...|+.-..+ . ....+.++....-.|.+.-.+.++++..+..-+.+......
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 3455555554444444444444433322 2 23456677777778889899999999988765667777788
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCC---CChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHH
Q 038673 191 VISACAQLGVIKYANWVCEIAEGSGFGP---INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFA 264 (548)
Q Consensus 191 ll~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 264 (548)
+.+.--..|+.+.|...++...+..-.- +....+.......|.-.+++..|...|++++. .|+..-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 8888889999999999999776543220 02344444555667778899999999998875 45566666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 265 MHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
..|+..+|++..+.|.. ..|...+-++++
T Consensus 298 Ylg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 77999999999999998 566666554444
No 187
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.80 E-value=0.0087 Score=52.52 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=78.7
Q ss_pred HHHhccC--CCCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhcc-------------
Q 038673 6 RLVFEQV--KYKNPFLWTALIRGYILQ-----GHLKDSISLYCSMRREGIGPVSFTLSALFKACTEV------------- 65 (548)
Q Consensus 6 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~------------- 65 (548)
...|++. ..+|-.+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4567666 567888999999998865 56666777889999999999999999999887542
Q ss_pred ---CCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 038673 66 ---LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGF 103 (548)
Q Consensus 66 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 103 (548)
.+.+-|..++++|...| +-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~g-V~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNG-VMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHhccccH
Confidence 23467889999999998 99999999999999876654
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.79 E-value=0.086 Score=50.13 Aligned_cols=200 Identities=16% Similarity=0.095 Sum_probs=109.4
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHH----CCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHH----cCCCCCChHh
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQY----AGVETD-YVTLVGVISACAQLGVIKYANWVCEIAEG----SGFGPINNVV 223 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~ 223 (548)
|......|-..|++++|...|.+... .+-+.+ ...|......+ +..++++|...+..+.. .|-.. .-..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~-~aA~ 115 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFS-QAAK 115 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HH-HHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHH-HHHH
Confidence 44455666667777777766665532 111111 11233333333 33477777777776653 33221 2345
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHhcCCC-----CC----hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 038673 224 VGSALIDMYSKC-GSIDDAYRIFVGMKQ-----RN----VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIG 293 (548)
Q Consensus 224 ~~~~li~~y~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 293 (548)
.+..+...|.+. |+++.|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-...+..
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~---- 191 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL---- 191 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc----
Confidence 677788888888 899999988887752 12 2345667788999999999999999988753322211
Q ss_pred HHHHHhhcCCccCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC------hhHHHHHHHHHHhcCCH---HH
Q 038673 294 VLTACSHVGLKCYGVSPSTD-HYACMVDLLGRAGCLEEALKMVEKMP-VEPN------GGVWGALLGACQIHRNP---EI 362 (548)
Q Consensus 294 ll~a~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~------~~~~~~ll~~~~~~~~~---~~ 362 (548)
+.+.. .|-..+-.+...|++..|.+.+++.. ..|+ ......|+.+|.. ||. +.
T Consensus 192 ---------------~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~-~D~e~f~~ 255 (282)
T PF14938_consen 192 ---------------KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE-GDVEAFTE 255 (282)
T ss_dssp ---------------GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT-T-CCCHHH
T ss_pred ---------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh-CCHHHHHH
Confidence 11121 23334446666899999999998763 2232 3344555565543 343 34
Q ss_pred HHHHHHHHhhcC
Q 038673 363 AQIAANHLFELE 374 (548)
Q Consensus 363 a~~~~~~~~~~~ 374 (548)
+..-|+.+.+++
T Consensus 256 av~~~d~~~~ld 267 (282)
T PF14938_consen 256 AVAEYDSISRLD 267 (282)
T ss_dssp HCHHHTTSS---
T ss_pred HHHHHcccCccH
Confidence 444444443333
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.77 E-value=0.026 Score=45.43 Aligned_cols=105 Identities=11% Similarity=0.014 Sum_probs=70.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCC--hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCC---ChhHHHHHHHH
Q 038673 23 LIRGYILQGHLKDSISLYCSMRREGIGPV--SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTS---DLYVGNTMIGM 97 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~ 97 (548)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++...... +. +..+...+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44567778999999999999998876654 3456667777888899999999998887753 22 22333334445
Q ss_pred HHHcCChHHHHHHHccCCCCCeehHHHHHHHH
Q 038673 98 YVKCGFLGCSRKVFDEMPERDVVSWTELIVAY 129 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 129 (548)
+...|+.++|.+.+-....++...|.--|..|
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888776544433333444444443
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.77 E-value=0.56 Score=45.13 Aligned_cols=101 Identities=13% Similarity=0.152 Sum_probs=70.3
Q ss_pred hhHHHHHHHHhhcCC--------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCH
Q 038673 289 VTFIGVLTACSHVGL--------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNP 360 (548)
Q Consensus 289 ~t~~~ll~a~~~~~~--------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 360 (548)
.+.+..|.-|...|. .+..+ |+..-|-..+.+|+..++|++-.++... +-++..|..++.+|...|+.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHCCCH
Confidence 344444555554553 33444 6777788888888888888888776654 33568888888888888888
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 038673 361 EIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 361 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
.+|.....++ .+..-+.+|.+.|+|.+|.+.--
T Consensus 254 ~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 254 KEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 8888777661 22456678888888888877643
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.76 E-value=0.014 Score=51.21 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=70.4
Q ss_pred HHccC--CCCChhHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC--------------
Q 038673 141 LFNEL--PLKDKVAWTAMVTGYVQN-----AKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG-------------- 199 (548)
Q Consensus 141 ~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-------------- 199 (548)
.|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+..
T Consensus 36 ~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hy 115 (228)
T PF06239_consen 36 LFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHY 115 (228)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccC
Confidence 35544 456777777777777654 667777777888888888888889988888765421
Q ss_pred --ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC
Q 038673 200 --VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS 237 (548)
Q Consensus 200 --~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~ 237 (548)
+-+.|.+++++|...|+-| |..++..|++.+++.+.
T Consensus 116 p~Qq~c~i~lL~qME~~gV~P--d~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 116 PRQQECAIDLLEQMENNGVMP--DKETEQMLLNIFGRKSH 153 (228)
T ss_pred cHHHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHhccccH
Confidence 3467788888888888886 88888888888876654
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.74 E-value=0.0042 Score=44.64 Aligned_cols=65 Identities=22% Similarity=0.221 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCC
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHR-NPEIAQIAANHLFELEP 375 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 375 (548)
+...|..+...+...|++++|+..|++.- ..|+ ...|..+-.++...| ++++|.+.+++.++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678889999999999999999998874 5565 777888888999999 79999999999999887
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.70 E-value=0.15 Score=43.63 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=56.5
Q ss_pred CCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-----CCeehHH
Q 038673 49 GPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-----RDVVSWT 123 (548)
Q Consensus 49 ~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 123 (548)
.|+..--..|..+....|+..+|...|++...-- +-.|....-.+.++....++...|...++++-+ +++.+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~-fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGI-FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 4555555556666777777777777777766544 666677777777777777777777776666543 2233333
Q ss_pred HHHHHHHhCCChHHHHHHHcc
Q 038673 124 ELIVAYANNGDMESAGGLFNE 144 (548)
Q Consensus 124 ~li~~~~~~g~~~~A~~~f~~ 144 (548)
.+...|...|+.+.|+.-|+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~ 185 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEV 185 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHH
Confidence 444444455555544444443
No 194
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.69 E-value=0.0081 Score=59.41 Aligned_cols=97 Identities=11% Similarity=0.058 Sum_probs=49.3
Q ss_pred CChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----CCeehHHH
Q 038673 50 PVSFTLSALFKACTEVLDVSLGQQIHAQTILLGG-FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE----RDVVSWTE 124 (548)
Q Consensus 50 p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~ 124 (548)
.+...+..+++.+....+++.+..++-....... ...-..+..++|+.|.+.|..+.+..++..=.. ||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 3444455555555555555555555544443310 111223334555555555555555555554433 55555555
Q ss_pred HHHHHHhCCChHHHHHHHccCC
Q 038673 125 LIVAYANNGDMESAGGLFNELP 146 (548)
Q Consensus 125 li~~~~~~g~~~~A~~~f~~m~ 146 (548)
|+..+.+.|++..|.++...|.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHH
Confidence 5555555555555555555443
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.63 E-value=0.37 Score=49.05 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=47.9
Q ss_pred CCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHH
Q 038673 236 GSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHY 315 (548)
Q Consensus 236 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~ 315 (548)
|-.+-+.++-+++...+..+...+..-+.+...+.-|-++|..|-. .
T Consensus 730 gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------------------------------~ 776 (1081)
T KOG1538|consen 730 GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------------------------------L 776 (1081)
T ss_pred cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------------------------------H
Confidence 3334444444444444444555555555555666677777777654 3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC-CCCCh
Q 038673 316 ACMVDLLGRAGCLEEALKMVEKMP-VEPNG 344 (548)
Q Consensus 316 ~~li~~~~~~g~~~~A~~~~~~m~-~~p~~ 344 (548)
..++++....+++.+|..+-++.| ..||+
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccc
Confidence 457778888888888888888887 45553
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.52 E-value=0.072 Score=53.94 Aligned_cols=247 Identities=16% Similarity=0.131 Sum_probs=146.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHccC-----------CCCChhHHHHHHHHHHHCCC--hhHHHHHHHHHHHCCCCCCHhhH
Q 038673 122 WTELIVAYANNGDMESAGGLFNEL-----------PLKDKVAWTAMVTGYVQNAK--PREAIEYFERMQYAGVETDYVTL 188 (548)
Q Consensus 122 ~~~li~~~~~~g~~~~A~~~f~~m-----------~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~ 188 (548)
+.+=+..|...|.+++|.++---- ..-+...++.-=.+|.+-.+ +-+.+.-+++|++.|-.|+....
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl 638 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL 638 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH
Confidence 344444556666666665541110 01122334444456655443 33455556788888888887543
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--------------CChh
Q 038673 189 VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--------------RNVF 254 (548)
Q Consensus 189 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------------~~~~ 254 (548)
...|+-.|.+.+|.++|. +.|.+ |..+.+|-....++.|.++...-.. .|+.
T Consensus 639 ---A~~~Ay~gKF~EAAklFk---~~G~e--------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k 704 (1081)
T KOG1538|consen 639 ---ADVFAYQGKFHEAAKLFK---RSGHE--------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK 704 (1081)
T ss_pred ---HHHHHhhhhHHHHHHHHH---HcCch--------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC
Confidence 445677889999988885 34544 2345555555666666666544321 1111
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHH------HHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGD------MVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCL 328 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~------m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 328 (548)
--.+-...+...|+.++|..+.-+ +.+-+.+.|. .+.++...+..-+.+...+
T Consensus 705 ePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~---------------------~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 705 EPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK---------------------AEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred CcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch---------------------hhhhHHHHHHHHHhhcccc
Confidence 112334455667777777765422 1121111121 1334455555566677788
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh----------HHHHHHHHHHcCCchHHH
Q 038673 329 EEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGN----------YIILSNIYASAGMWDDVS 398 (548)
Q Consensus 329 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----------~~~l~~~~~~~g~~~~a~ 398 (548)
.-|-++|.+|. | ..+++......+++++|..+.++.-+..|+-... +.-.-.+|.++|+-.+|.
T Consensus 764 gLAaeIF~k~g---D---~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~ 837 (1081)
T KOG1538|consen 764 GLAAEIFLKMG---D---LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAV 837 (1081)
T ss_pred chHHHHHHHhc---c---HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHH
Confidence 88999999987 2 2456677788899999999999988876653222 223345788999999999
Q ss_pred HHHHHHHhCCC
Q 038673 399 RVRRLLKMTGL 409 (548)
Q Consensus 399 ~~~~~m~~~g~ 409 (548)
++++++....+
T Consensus 838 ~vLeQLtnnav 848 (1081)
T KOG1538|consen 838 QVLEQLTNNAV 848 (1081)
T ss_pred HHHHHhhhhhh
Confidence 99998865544
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.51 E-value=0.027 Score=52.53 Aligned_cols=96 Identities=10% Similarity=0.039 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---chhHHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-VEPNG----GVWGALLGACQIHRNPEIAQIAANHLFELEPDK---IGNYII 383 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~ 383 (548)
...|..-+..+.+.|++++|...|+.+. ..|+. ..+-.+..++...|+++.|...|+.+.+..|++ +.++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3457777777777899999999998884 34553 355566688999999999999999999988875 456666
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhC
Q 038673 384 LSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 384 l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
++.+|...|++++|..+++...+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788899999999999999988653
No 198
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.39 E-value=1.1 Score=46.31 Aligned_cols=248 Identities=14% Similarity=0.125 Sum_probs=150.5
Q ss_pred CCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCC--------CChhHHHHHHHHHHHcCChHHHHHHHccCCCCCee
Q 038673 49 GPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFT--------SDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVV 120 (548)
Q Consensus 49 ~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 120 (548)
.|.+..|..+..+....-+++.|...|-+.-...|++ .+...-.+=+.+| .|.+++|.+++-+|.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 3666667766665555555555555443322111110 1111112223333 4889999999988888774
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCCC-----ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038673 121 SWTELIVAYANNGDMESAGGLFNELPLK-----DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISAC 195 (548)
Q Consensus 121 ~~~~li~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 195 (548)
.|..+.+.|++-...++++.-... -...|+.+...++....+++|.+.|..-.. ....+.++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecl 832 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECL 832 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHH
Confidence 456677788888888877654322 135788888888888888888888865321 12345555
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHH
Q 038673 196 AQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 275 (548)
.+..++++-+.+...+ | .+....-.+.+++.+.|.-++|.+.|-+-..|- +-+..|...+++.+|.++
T Consensus 833 y~le~f~~LE~la~~L------p-e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTL------P-EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHHHhhhhHHHHHHhc------C-cccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHH
Confidence 5655555544443332 3 466777888999999999999999887766553 345667788889999888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 276 FGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 276 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
-++..- |...|..+--.+-. -.+.. ..--|..+-++|++-+|.+++.+|
T Consensus 901 aq~~~l----~qv~tliak~aaql---------l~~~~-~~eaIe~~Rka~~~~daarll~qm 949 (1189)
T KOG2041|consen 901 AQRFQL----PQVQTLIAKQAAQL---------LADAN-HMEAIEKDRKAGRHLDAARLLSQM 949 (1189)
T ss_pred HHhccc----hhHHHHHHHHHHHH---------Hhhcc-hHHHHHHhhhcccchhHHHHHHHH
Confidence 766432 33333221111100 00001 112356677788888888888887
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.38 E-value=0.011 Score=49.95 Aligned_cols=68 Identities=21% Similarity=0.202 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH-----hCCCccCC
Q 038673 346 VWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK-----MTGLKKNP 413 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 413 (548)
....++..+...|+++.|...++.++..+|.+...|..++.+|...|+..+|.++++.+. +.|+.|.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 445566778889999999999999999999999999999999999999999999998875 45776654
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.38 E-value=0.0078 Score=38.72 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 345 GVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 345 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
.+|..+-.++...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457778889999999999999999999999999888777653
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.33 E-value=0.017 Score=56.72 Aligned_cols=97 Identities=11% Similarity=0.036 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKM-PVEPNG----GVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+-.+|...|+.++|...+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 5667777778888888888888888774 466763 34777777888888888888888888776321 222111
Q ss_pred H--HHHHcCCchHHHHHHHHHHhCCCc
Q 038673 386 N--IYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 386 ~--~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
. .+....+.++..++++.+.+.|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112233445666777777776654
No 202
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.32 E-value=0.29 Score=40.87 Aligned_cols=126 Identities=16% Similarity=0.146 Sum_probs=77.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcC
Q 038673 188 LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHG 267 (548)
Q Consensus 188 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 267 (548)
...++..+...+.......+++.+.+.+. .+....+.++..|++.+ .++....+.. ..+.......+..|.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~---~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS---ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc---cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 34556666666777788888888777763 37778888888888653 3444455542 223344445666667777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHc-CCHHHHHHHHHhCCCCCChhH
Q 038673 268 RAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRA-GCLEEALKMVEKMPVEPNGGV 346 (548)
Q Consensus 268 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~ 346 (548)
.++++.-++.++.. |...++.+... ++++.|.+++.+-. +...
T Consensus 84 l~~~~~~l~~k~~~---------------------------------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~l 127 (140)
T smart00299 84 LYEEAVELYKKDGN---------------------------------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPEL 127 (140)
T ss_pred cHHHHHHHHHhhcC---------------------------------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHH
Confidence 77777777766543 33334444444 66777777776532 5556
Q ss_pred HHHHHHHHH
Q 038673 347 WGALLGACQ 355 (548)
Q Consensus 347 ~~~ll~~~~ 355 (548)
|..++..+.
T Consensus 128 w~~~~~~~l 136 (140)
T smart00299 128 WAEVLKALL 136 (140)
T ss_pred HHHHHHHHH
Confidence 666665554
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.29 E-value=0.49 Score=43.73 Aligned_cols=54 Identities=9% Similarity=0.118 Sum_probs=42.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 352 GACQIHRNPEIAQIAANHLFELEPDK---IGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
.-|.+.|.+..|..-++.+++.-|+. +.+...+..+|...|..++|..+.+.+.
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45777888888888888888866664 4566778888999999999988776653
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.29 E-value=1.1 Score=43.00 Aligned_cols=282 Identities=17% Similarity=0.108 Sum_probs=152.0
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHH--HHHcCChHHHHHHHccCCC-CCee--hHHHHHHHHHhCCChHHH
Q 038673 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGM--YVKCGFLGCSRKVFDEMPE-RDVV--SWTELIVAYANNGDMESA 138 (548)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~-~~~~--~~~~li~~~~~~g~~~~A 138 (548)
..||-..|++.-.+..+. +..|..-.-.|+.+ -.-.|++++|++-|+.|.. |... -...|.-.-.+.|+.+.|
T Consensus 96 gAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 96 GAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred ccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHH
Confidence 346666666665554433 34444444444433 2345888888888888865 3221 122333333466777777
Q ss_pred HHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCCHhh--HHHHHHHHHc---cCChhHHHHHHH
Q 038673 139 GGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAG-VETDYVT--LVGVISACAQ---LGVIKYANWVCE 209 (548)
Q Consensus 139 ~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t--~~~ll~~~~~---~g~~~~a~~~~~ 209 (548)
...-+..... -.-.+.+.+...+..|+++.|+++++.-+... +.+|..- -..|+.+-+. ..+...|...-.
T Consensus 174 r~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 174 RHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 6665544322 23467777778888888888888887655432 3343321 1122222110 012222332222
Q ss_pred HHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 038673 210 IAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYS-SMILGFAMHGRAHAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 210 ~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 288 (548)
+..+. +||.+.-- .-..++.+.|+..++-.+++.+-+....|+.
T Consensus 254 ~a~KL-----------------------------------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 254 EANKL-----------------------------------APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred HHhhc-----------------------------------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 22222 22222211 1223556666666666666666654333332
Q ss_pred hhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHH--HH--HHHHhCCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 038673 289 VTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEE--AL--KMVEKMPVEPN-GGVWGALLGACQIHRNPEIA 363 (548)
Q Consensus 289 ~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~--~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a 363 (548)
. . ...+.+.|+-.. .. +-++.| +|| ..+.-.+..+....|++..|
T Consensus 299 a--------------------------~--lY~~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~A 348 (531)
T COG3898 299 A--------------------------L--LYVRARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAA 348 (531)
T ss_pred H--------------------------H--HHHHhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHH
Confidence 1 1 111223333111 11 112333 455 55666666888888999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHc-CCchHHHHHHHHHHhCCCccCCce
Q 038673 364 QIAANHLFELEPDKIGNYIILSNIYASA-GMWDDVSRVRRLLKMTGLKKNPGY 415 (548)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~ 415 (548)
..-.+.+....|... .|..|.++-... |+-.++.+.+.+..+. +.+|.|
T Consensus 349 Ra~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW 398 (531)
T COG3898 349 RAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAW 398 (531)
T ss_pred HHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcc
Confidence 998888888888765 888888887555 8888888887766543 344543
No 205
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.19 E-value=1.1 Score=43.97 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=39.5
Q ss_pred ccCCCCc----CHHHHHHHHHH--HHHcCCHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 038673 304 KCYGVSP----STDHYACMVDL--LGRAGCLEEALKMVEKM-PVEPNGGVWGALLGACQIHRNPEIAQIAANH 369 (548)
Q Consensus 304 ~~~~~~p----~~~~~~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 369 (548)
.+.|+.| +...-|.|.++ +-..|++.++.-.-.-+ .+.|++.+|+.+.-+.....++++|-..+..
T Consensus 448 ~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 448 TEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4455555 34455555554 34567777765443333 2567777777776666677777777666554
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.14 E-value=0.022 Score=41.35 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=53.6
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHH
Q 038673 319 VDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYI 382 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 382 (548)
-..|.+.+++++|.+.++.+- ..|+ +..|...-..+...|+++.|...++++++..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 357889999999999999885 5565 666777778899999999999999999999998875443
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.09 E-value=0.26 Score=47.41 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=43.0
Q ss_pred hHHHHHH--HHHhCCCchHHHHHHHHHHHCCCCC---ChhhHHHHHHHhhccCCcHHHHHHHHH
Q 038673 19 LWTALIR--GYILQGHLKDSISLYCSMRREGIGP---VSFTLSALFKACTEVLDVSLGQQIHAQ 77 (548)
Q Consensus 19 ~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~a~~~~~~~~~a~~~~~~ 77 (548)
++..-+. -+++.|+....+.+|+..++-|..- =...|..|-++|.-.+++++|.++|..
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 3444443 3788999999999999999877431 223467777788888889999888764
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.04 E-value=0.84 Score=39.21 Aligned_cols=100 Identities=14% Similarity=0.038 Sum_probs=68.8
Q ss_pred CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CChhh
Q 038673 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RNVFS 255 (548)
Q Consensus 181 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~ 255 (548)
+.|+...-..+..+..+.|+..+|...|++....-+- .|..+.-.+.++....++...|...++++-+ +.+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA--~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFA--HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccC--CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 3555555566777777777777777777777655444 5677777777777777777777777776653 23344
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 256 YSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
.-.+...|...|.+.+|..-|+.....
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 555666777788888888888777763
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.13 Score=47.74 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=74.6
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---ccCChhHHHHHHHHHHHcCCCCCChHhH
Q 038673 148 KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACA---QLGVIKYANWVCEIAEGSGFGPINNVVV 224 (548)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 224 (548)
.|...|-.|...|...|+.+.|..-|.+..+.. .++...+..+..++. ......++..+++++++.... ++.+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~---~ira 229 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA---NIRA 229 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc---cHHH
Confidence 377888888888888888888888888876642 334444444444432 223456788888888877654 7777
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC--CChhhhHHHHH
Q 038673 225 GSALIDMYSKCGSIDDAYRIFVGMKQ--RNVFSYSSMIL 261 (548)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 261 (548)
..-|...+...|++.+|...|+.|.+ |.-..|..+|.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 77777777777777777777777764 33344555554
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.27 Score=44.46 Aligned_cols=124 Identities=12% Similarity=0.088 Sum_probs=88.5
Q ss_pred HHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----CCeehHHHH-----
Q 038673 55 LSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE----RDVVSWTEL----- 125 (548)
Q Consensus 55 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~l----- 125 (548)
.+.++..+...+.+.-....+..+++.. .+.++.....|.++-.+.||.+.|...|+...+ -|..+.+.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456666667788888888888888876 677889999999999999999999999996543 233333333
Q ss_pred HHHHHhCCChHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 038673 126 IVAYANNGDMESAGGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYA 179 (548)
Q Consensus 126 i~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 179 (548)
...|.-.+++.+|...|++++.. |++.-|.-.-+..-.|+...|++.++.|+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33456667777787777776633 4555555444555567778888888887764
No 211
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.79 E-value=2.2 Score=41.94 Aligned_cols=75 Identities=11% Similarity=0.077 Sum_probs=52.8
Q ss_pred HHhccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC
Q 038673 7 LVFEQVKY--KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLG 82 (548)
Q Consensus 7 ~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 82 (548)
++=+++.. .|+.+|-.||+-|...|..++..+++++|..- ++-=..+|..-+++=....++.....+|.+.++..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 44445542 37789999999999999999999999999752 22234556666665555667777777777776643
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.75 E-value=0.21 Score=46.56 Aligned_cols=102 Identities=16% Similarity=0.110 Sum_probs=77.0
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKM 334 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 334 (548)
.|..-+..+...|++++|+..|+.+++. .|+.. . ....+-.+..+|...|++++|...
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~------------------~--a~~A~y~LG~~y~~~g~~~~A~~~ 202 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDST------------------Y--QPNANYWLGQLNYNKGKKDDAAYY 202 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCc------------------c--hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555555556679999999999999984 45431 1 123456788999999999999999
Q ss_pred HHhCC-CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 335 VEKMP-VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 335 ~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
|+.+. ..|+ ...+-.+...+...|+.+.|...++.+++..|++.
T Consensus 203 f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 203 FASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 99884 2343 44454555677889999999999999999999876
No 213
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=3.4 Score=43.35 Aligned_cols=306 Identities=12% Similarity=0.022 Sum_probs=165.8
Q ss_pred CCCCCChhhHHH-----HHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC---hHHHHHHHccCCC-
Q 038673 46 EGIGPVSFTLSA-----LFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGF---LGCSRKVFDEMPE- 116 (548)
Q Consensus 46 ~g~~p~~~~~~~-----ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~- 116 (548)
-|++.+..-|.. ++.-+...+.+..|.++-..+--. ..-...++.....-+.+..+ -+.+..+=+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p--~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLP--ESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCc--cccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 466666555554 455556677788888887766321 11125677777777777632 3334444444544
Q ss_pred -CCeehHHHHHHHHHhCCChHHHHHHHccCCCC--------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhh
Q 038673 117 -RDVVSWTELIVAYANNGDMESAGGLFNELPLK--------DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT 187 (548)
Q Consensus 117 -~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 187 (548)
...++|..+..--...|+.+-|..+++.=+.. +..-+..-+.-..+.|+.+-...++-.|.+.- +...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 56778888888888999999999987654321 22234455556667777777777666654421 1111
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHc-CCCC----------------------------CChHhHHHHHHHHHhcCCCH
Q 038673 188 LVGVISACAQLGVIKYANWVCEIAEGS-GFGP----------------------------INNVVVGSALIDMYSKCGSI 238 (548)
Q Consensus 188 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p----------------------------~~~~~~~~~li~~y~~~g~~ 238 (548)
|...+ .+.-.|..+|.+..+. +..- ..-........+.+.+....
T Consensus 581 l~~~l------~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~ 654 (829)
T KOG2280|consen 581 LFMTL------RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEK 654 (829)
T ss_pred HHHHH------HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhh
Confidence 11111 1122222333322221 1000 00001111122222222211
Q ss_pred HHHH----------HHHhcCCC-----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC
Q 038673 239 DDAY----------RIFVGMKQ-----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL 303 (548)
Q Consensus 239 ~~A~----------~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 303 (548)
.-.. ++++.+.. -.-.+.+--+.-+...|+..+|.++-++.+
T Consensus 655 s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----------------------- 711 (829)
T KOG2280|consen 655 SFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----------------------- 711 (829)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----------------------
Confidence 1000 01111100 001122222333344444444444433322
Q ss_pred ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 038673 304 KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYII 383 (548)
Q Consensus 304 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 383 (548)
-||...|-.-+.+++..+++++-+++-++++ .+.-|.-++.+|.+.|+.++|.+.+.+.-.+ .-
T Consensus 712 -----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~e 775 (829)
T KOG2280|consen 712 -----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QE 775 (829)
T ss_pred -----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HH
Confidence 2556667777888888999998888887775 3677888889999999999888876654322 24
Q ss_pred HHHHHHHcCCchHHHHHH
Q 038673 384 LSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 384 l~~~~~~~g~~~~a~~~~ 401 (548)
...+|.+.|++.+|.++-
T Consensus 776 kv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 776 KVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHHhccHHHHHHHH
Confidence 667888889888888764
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.62 E-value=2.5 Score=41.50 Aligned_cols=93 Identities=13% Similarity=-0.036 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP----VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
..+|.+.+....|..-++.|..+|-+.+ +.+++.++++++.-+ ..|+...|..+|+..+...|+++..-.-....
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3467788888888888999999998875 557788888888654 45788899999999999899887555566667
Q ss_pred HHHcCCchHHHHHHHHHH
Q 038673 388 YASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 388 ~~~~g~~~~a~~~~~~m~ 405 (548)
+.+.++-+.|..+|+.-.
T Consensus 476 Li~inde~naraLFetsv 493 (660)
T COG5107 476 LIRINDEENARALFETSV 493 (660)
T ss_pred HHHhCcHHHHHHHHHHhH
Confidence 778888888888888443
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.60 E-value=0.11 Score=43.71 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=52.3
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHhhH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK-----TETKPNGVTF 291 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~ 291 (548)
-..+...++..+...|+++.|..+.+.+.. -|...|..+|.+|...|+..+|++.|+++.. .|+.|+..|-
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 344667788888899999999999998874 3567899999999999999999999988753 4777777653
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.55 E-value=0.4 Score=42.99 Aligned_cols=61 Identities=16% Similarity=0.037 Sum_probs=41.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCC-C-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC
Q 038673 22 ALIRGYILQGHLKDSISLYCSMRREGIG-P-VSFTLSALFKACTEVLDVSLGQQIHAQTILLG 82 (548)
Q Consensus 22 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 82 (548)
.....+.+.|++.+|.+.|+.+...-.. | -....-.+..++-..|+++.|...++..++.-
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3455567888999999999998875211 1 12345566777888889999998888888764
No 217
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.50 E-value=2.8 Score=41.28 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=44.0
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 038673 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLL 404 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 404 (548)
+..+|++.++.-...-+.+..| ++.+|..++-++....++++|..++..+
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5678889888888888888999 7889999999999999999999999764
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.47 E-value=2.8 Score=41.00 Aligned_cols=184 Identities=17% Similarity=0.086 Sum_probs=93.4
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCC--CCC-HhhHHHHHHHHHc---cCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGV--ETD-YVTLVGVISACAQ---LGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~-~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
.++-+|....+++..+++.+.|..... .++ ...--...-|+.+ .|+.++|.+++..+....-. .++.++..+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~--~~~d~~gL~ 223 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN--PDPDTLGLL 223 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC--CChHHHHHH
Confidence 455567778888888888888865410 011 1111122223444 67788888888775554444 366666666
Q ss_pred HHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH---HHHHHHHhhcCCcc
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTF---IGVLTACSHVGLKC 305 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~~~~~ 305 (548)
...|-. .|.+....|.. ..++|+..|.+.-+ +.||..+= ..++....+.....
T Consensus 224 GRIyKD---------~~~~s~~~d~~-------------~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 224 GRIYKD---------LFLESNFTDRE-------------SLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHH---------HHHHcCccchH-------------HHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccch
Confidence 665532 12221111111 15667766666544 33443321 11111111100000
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038673 306 YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDK 377 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 377 (548)
..+. ..-..+-..+++.|..+ -..|-.-+.+++.++.-.|+.+.|.+..+++.++.|+.
T Consensus 280 ~el~---~i~~~l~~llg~kg~~~----------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 280 EELR---KIGVKLSSLLGRKGSLE----------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHH---HHHHHHHHHHHhhcccc----------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 0000 00011111222222111 12455566788899999999999999999999987763
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.41 E-value=4 Score=42.43 Aligned_cols=342 Identities=14% Similarity=0.069 Sum_probs=164.3
Q ss_pred CcchHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCh--hhHHH--H--HHHhhccCCcHHHHHH
Q 038673 2 DSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRRE-GIGPVS--FTLSA--L--FKACTEVLDVSLGQQI 74 (548)
Q Consensus 2 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~~~~~--l--l~a~~~~~~~~~a~~~ 74 (548)
+++|.+..+. .|.+..|..+...-...-.++.|...|-+.... |++.-. .+..+ + ....+--|++++|.++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 4566666665 455678998888877777888888888776542 332100 01000 0 0112234778888888
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-----CCeehHHHHHHHHHhCCChHHHHHHHccCC---
Q 038673 75 HAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-----RDVVSWTELIVAYANNGDMESAGGLFNELP--- 146 (548)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--- 146 (548)
+-.+-+.. .-|.++.+.|++-...++++.-.. .-..+|+.+...++....+++|.+.+..-.
T Consensus 757 yld~drrD----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e 826 (1189)
T KOG2041|consen 757 YLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE 826 (1189)
T ss_pred hhccchhh----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 76664443 335556666666666665544221 112345555555555555555554433211
Q ss_pred ----------------------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHH
Q 038673 147 ----------------------LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYA 204 (548)
Q Consensus 147 ----------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 204 (548)
+.|....-.|...+...|.-++|.+.|-+- + .| ...+..|....++.+|
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEA 897 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHH
Confidence 224445566677777777777777766432 2 12 1345566666677666
Q ss_pred HHHHHHHHHcCCCCCChHhHH--------------HHHHHHHhcCCCHHHHHHHHhcCCCCCh---hhhHHHHHHH----
Q 038673 205 NWVCEIAEGSGFGPINNVVVG--------------SALIDMYSKCGSIDDAYRIFVGMKQRNV---FSYSSMILGF---- 263 (548)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~--------------~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~---- 263 (548)
.++-+...- + .+.+. ---|.++-+.|..-+|.+++.+|.++.. +.|--+-..|
T Consensus 898 velaq~~~l---~---qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 898 VELAQRFQL---P---QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHhccc---h---hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 655443211 0 11110 1124556666766666666666653211 1111111111
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhhcCCccCCCC--cCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-
Q 038673 264 AMHGRAHAAIQLFGDMVKTETKPNGVT-FIGVLTACSHVGLKCYGVS--PSTDHYACMVDLLGRAGCLEEALKMVEKMP- 339 (548)
Q Consensus 264 ~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 339 (548)
.-..+..++++-.+....+|...+... ..+.+.+ .......+.- ....++-.|.+--...|..+.|++.--.+.
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~--~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~D 1049 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATDLLESGLLA--EQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSD 1049 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhh--hHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhcc
Confidence 001122233333333333333322211 0000000 0000000000 123445555566677899998887654443
Q ss_pred ---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038673 340 ---VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 340 ---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 372 (548)
+-|-..+|..|.-+.+..+.+....++|-++..
T Consensus 1050 YEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1050 YEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 345566665555443344444445555544444
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.33 E-value=0.031 Score=41.23 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC---CchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 346 VWGALLGACQIHRNPEIAQIAANHLFEL----EPD---KIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+++.+-..+...|++++|...+++.+++ .++ ...++..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555555555441 111 13456667777777777777777776543
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.27 E-value=0.86 Score=36.74 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=78.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHH---------HHcCCHHHHHH
Q 038673 263 FAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLL---------GRAGCLEEALK 333 (548)
Q Consensus 263 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~---------~~~g~~~~A~~ 333 (548)
....|..++..++..+.... .+..-++.+|.-... ......++..+ ..+|++.....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiD-----------aa~C~yvv~~LdsIGkiFDis~C~NlKrVi~ 77 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIID-----------AADCDYVVETLDSIGKIFDISKCGNLKRVIE 77 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHH-----------H--HHHHHHHHHHHGGGS-GGG-S-THHHHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecch-----------hhchhHHHHHHHHHhhhcCchhhcchHHHHH
Confidence 44568888999998888764 122222222221110 00111121111 23455555555
Q ss_pred HHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 334 MVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 334 ~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
.+-.+. .+.......+......|.-+.-.+++..+.+.+..+|....-++++|.+.|+..++.+++++.-++|++
T Consensus 78 C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 78 CYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555553 345566777888999999999999999988766667779999999999999999999999999999985
No 222
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.11 E-value=5.8 Score=42.57 Aligned_cols=82 Identities=9% Similarity=0.038 Sum_probs=50.8
Q ss_pred HHHHHHHH--HhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 20 WTALIRGY--ILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGM 97 (548)
Q Consensus 20 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 97 (548)
|...+.++ .|.|+.++|..+++.....+.. |..|+..+-..|...+..+++..++++..+. -|+......+..+
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---~P~eell~~lFma 119 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK---YPSEELLYHLFMA 119 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCcHHHHHHHHHH
Confidence 45555553 4567777777666665543322 5566666666667777777777777777664 2446666666666
Q ss_pred HHHcCChH
Q 038673 98 YVKCGFLG 105 (548)
Q Consensus 98 ~~~~g~~~ 105 (548)
|.+.+++.
T Consensus 120 yvR~~~yk 127 (932)
T KOG2053|consen 120 YVREKSYK 127 (932)
T ss_pred HHHHHHHH
Confidence 66666554
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.04 E-value=0.26 Score=40.06 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=65.9
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
|..++.++|.++++.|+.+....+.+..- |+.++...-..- -.....+.|+..+..+++.+|+..|++..|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~-------~~~~spl~Pt~~lL~AIv~sf~~n~~i~~a 71 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGD-------YPPSSPLYPTSRLLIAIVHSFGYNGDIFSA 71 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCc-------cCCCCCCCCCHHHHHHHHHHHHhcccHHHH
Confidence 34567778888888888877777775543 333332100000 113346789999999999999999999999
Q ss_pred HHHHHhC----CCCCChhHHHHHHHHHHh
Q 038673 332 LKMVEKM----PVEPNGGVWGALLGACQI 356 (548)
Q Consensus 332 ~~~~~~m----~~~p~~~~~~~ll~~~~~ 356 (548)
+++++.. ++.-+..+|..|+.-+..
T Consensus 72 l~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 72 LKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9998876 355568899999965443
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.99 E-value=0.027 Score=41.50 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCC---------CC-hhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQ---------RN-VFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
..+++.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555556666666666666555554431 11 34566666667777777777777766543
No 225
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.98 E-value=2.6 Score=37.78 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=35.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHHcCCchHHH
Q 038673 351 LGACQIHRNPEIAQIAANHLFELEPDKI---GNYIILSNIYASAGMWDDVS 398 (548)
Q Consensus 351 l~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 398 (548)
..-|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3557888899999999999999888864 35567888888888877443
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=94.87 E-value=0.28 Score=41.43 Aligned_cols=92 Identities=11% Similarity=-0.048 Sum_probs=56.9
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
....-+-+.|++++|..+|+-+...+ .-|..-+..|..++-..+++++|...|......+.. |+...--....|..
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---dp~p~f~agqC~l~ 117 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---DYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---CCCccchHHHHHHH
Confidence 34444566777777777777766543 223333445555566667777777777776655543 44445556667777
Q ss_pred CCCHHHHHHHHhcCCC
Q 038673 235 CGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~~ 250 (548)
.|+.+.|...|.....
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 7777777777666543
No 227
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=6.8 Score=41.77 Aligned_cols=176 Identities=15% Similarity=0.087 Sum_probs=117.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHH----HHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 038673 121 SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMV----TGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACA 196 (548)
Q Consensus 121 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 196 (548)
+...-|..+.+...++-|..+-+.-.. |..+...+. .-+.+.|++++|...|-+-... +.|. .++.-+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 345566777777788888877655432 233333333 3455789999999888765432 3332 3445555
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChh--hhHHHHHHHHhcCCHHHHHH
Q 038673 197 QLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVF--SYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~ 274 (548)
....+..-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+.-. .... -....+..+.+.+-.++|.-
T Consensus 409 daq~IknLt~YLe~L~~~gla---~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA---NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc---cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHH
Confidence 666667777788888899988 77888899999999999999988888776 2222 13445555566666666665
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 275 LFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 275 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
+-.....+ -..+--.+-..|++++|++.++.+|
T Consensus 485 LA~k~~~h--------------------------------e~vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 485 LATKFKKH--------------------------------EWVLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHhccC--------------------------------HHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 55443321 1223334556789999999999997
No 228
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.73 E-value=4.4 Score=39.23 Aligned_cols=284 Identities=16% Similarity=0.090 Sum_probs=178.4
Q ss_pred chHHHHHHHHHhC--CCchHHHHHHHHHHHCCCCCChhhHHHHHHHh--hccCCcHHHHHHHHHHHHhCCCCCChhHHHH
Q 038673 18 FLWTALIRGYILQ--GHLKDSISLYCSMRREGIGPVSFTLSALFKAC--TEVLDVSLGQQIHAQTILLGGFTSDLYVGNT 93 (548)
Q Consensus 18 ~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (548)
.-|.+|-.++.-. |+-..|.++-.+-... +..|...+..|+.+- .-.|+.+.|++-|+.|+... +.-..-...
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP--EtRllGLRg 159 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP--ETRLLGLRG 159 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh--HHHHHhHHH
Confidence 3577777777654 6677777666554422 455777777777664 45699999999999997532 111111223
Q ss_pred HHHHHHHcCChHHHHHHHccCCC--CC-eehHHHHHHHHHhCCChHHHHHHHccCC-----CCChh--HHHHHHHHHHH-
Q 038673 94 MIGMYVKCGFLGCSRKVFDEMPE--RD-VVSWTELIVAYANNGDMESAGGLFNELP-----LKDKV--AWTAMVTGYVQ- 162 (548)
Q Consensus 94 li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~-----~~~~~--~~~~li~~~~~- 162 (548)
|.----+.|+.+.|+..-++.-+ |. .-.+.+.+...+..|+++.|+++.+.-. ++++. .-..|+.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33333477899998888777654 33 3367889999999999999999988654 34433 22233332221
Q ss_pred --CCChhHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHH
Q 038673 163 --NAKPREAIEYFERMQYAGVETDYVTL-VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSID 239 (548)
Q Consensus 163 --~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~ 239 (548)
..+...|...-.+. ..+.||.+.- .....++.+.|++.++-.+++.+-+..+.| +. .++..+.+.|+..
T Consensus 240 ~ldadp~~Ar~~A~~a--~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~i----a~lY~~ar~gdta 311 (531)
T COG3898 240 LLDADPASARDDALEA--NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DI----ALLYVRARSGDTA 311 (531)
T ss_pred HhcCChHHHHHHHHHH--hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HH----HHHHHHhcCCCcH
Confidence 23344455443333 3357776543 334567889999999999999999887665 32 2344556777643
Q ss_pred HH----HHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHH
Q 038673 240 DA----YRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHY 315 (548)
Q Consensus 240 ~A----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~ 315 (548)
.. .+-+..|+..|..+--.+..+-...|++..|..--+.... . .|....|
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~------------------------~pres~~ 365 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--E------------------------APRESAY 365 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--h------------------------CchhhHH
Confidence 22 1345667777777777777777777877766655554443 2 3333445
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHhC
Q 038673 316 ACMVDLLGR-AGCLEEALKMVEKM 338 (548)
Q Consensus 316 ~~li~~~~~-~g~~~~A~~~~~~m 338 (548)
..|.+.-.. .|+-.++...+.+.
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHH
Confidence 555555443 37777777777655
No 229
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.68 E-value=3.6 Score=45.45 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=15.5
Q ss_pred CCChhHHHHHHHHHHHcC--ChHHHHHHHccCC
Q 038673 85 TSDLYVGNTMIGMYVKCG--FLGCSRKVFDEMP 115 (548)
Q Consensus 85 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~ 115 (548)
.|+ .-...+|..|.+.+ .++.|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 444 33445666666665 5555555544433
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.67 E-value=0.24 Score=45.29 Aligned_cols=109 Identities=12% Similarity=0.134 Sum_probs=82.2
Q ss_pred HHHhccCC--CCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC------------
Q 038673 6 RLVFEQVK--YKNPFLWTALIRGYILQ-----GHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVL------------ 66 (548)
Q Consensus 6 ~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~------------ 66 (548)
++.|...+ ++|-.+|-+++..+... +..+=.-..++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 56777777 67888999999888654 455666677899999999999999999998875422
Q ss_pred ----CcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCh-HHHHHHHccCC
Q 038673 67 ----DVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFL-GCSRKVFDEMP 115 (548)
Q Consensus 67 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 115 (548)
.-+-+..++++|.-.| +.||..+-..|++++.+.+.. .+..++.-.|+
T Consensus 134 HYP~QQ~C~I~vLeqME~hG-VmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHG-VMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hCchhhhHHHHHHHHHHHcC-CCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2345778888888888 899999999999988887753 33444444444
No 231
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.63 E-value=0.2 Score=48.21 Aligned_cols=93 Identities=11% Similarity=0.006 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhc----C--CCCc
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKM-------P-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFEL----E--PDKI 378 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--p~~~ 378 (548)
..+..+..++.-.|+++.|.+.|+.. + -.....+.-+|-+.|....+++.|+..+.+-+.+ + ....
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 45666777788888888888887654 2 1122444556777777788899999888876552 1 2234
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 379 GNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 379 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
.++.+|+++|...|..+.|+.+...-.
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 589999999999999999988766554
No 232
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=5 Score=39.16 Aligned_cols=252 Identities=11% Similarity=-0.066 Sum_probs=110.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 038673 24 IRGYILQGHLKDSISLYCSMRREGIGPVS-FTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCG 102 (548)
Q Consensus 24 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 102 (548)
-..+.+..++..|+..+...++.+ ||. .-|..-+..+...++++.+.--..+-++.. +.......-.-.++...+
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCHLALS 131 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhhhhhH
Confidence 344555667888888888888753 433 334444444445555555544333333321 111223333334444444
Q ss_pred ChHHHHHHHccCC---------------C-----CCeehHHHH-HHHHHhCCChHHHHHHHccCCCCChh-HHHHHHH--
Q 038673 103 FLGCSRKVFDEMP---------------E-----RDVVSWTEL-IVAYANNGDMESAGGLFNELPLKDKV-AWTAMVT-- 158 (548)
Q Consensus 103 ~~~~A~~~~~~m~---------------~-----~~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~~~~~~-~~~~li~-- 158 (548)
+..+|.+.|+.-. . |.-.+|-.+ ..++.-.|+.++|.+.-..+.+-|.. .+...++
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence 5555554443111 0 111112111 12344556666665554333322222 2222222
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHH---HH----------HHHccCChhHHHHHHHHHHHcCCCC-CChHhH
Q 038673 159 GYVQNAKPREAIEYFERMQYAGVETDYVTLVGV---IS----------ACAQLGVIKYANWVCEIAEGSGFGP-INNVVV 224 (548)
Q Consensus 159 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~----------~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~ 224 (548)
++--.++.+.|...|++-+.. .||...-.++ .. -..+.|.+..|.+.|.+.+...+.- ..+...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 233345666666666665543 3443322211 11 1223455555555555554432210 013344
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHH---HHHHHhcCCHHHHHHHHHHHHH
Q 038673 225 GSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSM---ILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~ 281 (548)
|........+.|++.+|..--+....-|..-.-++ ..++...+++++|++-|+...+
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555444333221111 1223334455555555544443
No 233
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.54 E-value=0.4 Score=39.00 Aligned_cols=81 Identities=14% Similarity=-0.047 Sum_probs=46.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHC---------------CCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHH
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRRE---------------GIGPVSFTLSALFKACTEVLDVSLGQQIHAQTIL 80 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 80 (548)
|..++.++|.++++.|+.+....+.+..-.- ...|+..++.+++.+++..+++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3456788888899999988888877654321 1224444455555555555555555555554444
Q ss_pred hCCCCCChhHHHHHHH
Q 038673 81 LGGFTSDLYVGNTMIG 96 (548)
Q Consensus 81 ~~~~~~~~~~~~~li~ 96 (548)
.-+++-+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 4324444444544444
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.73 Score=44.63 Aligned_cols=94 Identities=11% Similarity=0.022 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKMP-VE-PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASA 391 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 391 (548)
.+..+.-.|.+.+++.+|++.-++.. .. +|....--=-.+|...|+++.|+..|+++++++|.|..+-.-|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 46778888999999999998887763 33 44555545557899999999999999999999999988888888777666
Q ss_pred CCchHH-HHHHHHHHhC
Q 038673 392 GMWDDV-SRVRRLLKMT 407 (548)
Q Consensus 392 g~~~~a-~~~~~~m~~~ 407 (548)
....+. .++|..|...
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 655544 6778888643
No 235
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.42 E-value=0.0024 Score=53.79 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=59.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHH
Q 038673 191 VISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAH 270 (548)
Q Consensus 191 ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (548)
++..+.+.+.++....+++.+.+.+.. .+....+.++..|++.+..+...++++.... .-...++..+.+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~--~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKE--NNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC---SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc--cCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 456666777888888888888876655 5788899999999999887888888774332 34455666777777777
Q ss_pred HHHHHHHHH
Q 038673 271 AAIQLFGDM 279 (548)
Q Consensus 271 ~A~~l~~~m 279 (548)
+|.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 777666654
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=2.4 Score=39.50 Aligned_cols=142 Identities=11% Similarity=0.066 Sum_probs=92.6
Q ss_pred HHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHH
Q 038673 240 DAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMV 319 (548)
Q Consensus 240 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li 319 (548)
...+.+++...+....--.-.......|+..+|..+|+..... .|. +...--.|+
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~--~~~-----------------------~~~~~~~la 175 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQA--APE-----------------------NSEAKLLLA 175 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHh--Ccc-----------------------cchHHHHHH
Confidence 3444445544432222222334567789999999999998873 222 234456688
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCChhHHHH---HHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 038673 320 DLLGRAGCLEEALKMVEKMPVEPNGGVWGA---LLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDD 396 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 396 (548)
..|...|+.++|..++..+|..-...-|.. -|....+.........+ +.-...+|++...-..|+..|...|+.++
T Consensus 176 ~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~ 254 (304)
T COG3118 176 ECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDL-QRRLAADPDDVEAALALADQLHLVGRNEA 254 (304)
T ss_pred HHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 899999999999999999984433333333 23333333333333322 23334689999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 038673 397 VSRVRRLLKMT 407 (548)
Q Consensus 397 a~~~~~~m~~~ 407 (548)
|.+.+-.+.++
T Consensus 255 Ale~Ll~~l~~ 265 (304)
T COG3118 255 ALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHHh
Confidence 99887666544
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.24 E-value=2.4 Score=42.86 Aligned_cols=131 Identities=14% Similarity=0.197 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHH
Q 038673 90 VGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREA 169 (548)
Q Consensus 90 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 169 (548)
-.+.++..+-+.|..+.|+.+-..- ..-.....+.|+++.|.++-++.. +...|..|.....++|+++-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 3566666666666666666652221 223334456666666666655544 455777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhc
Q 038673 170 IEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247 (548)
Q Consensus 170 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 247 (548)
.+.|.+... +..++-.|...|+.+.-.++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 367 e~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 367 EECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD--------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC--------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 777665432 34455555666666666666665555542 22223333334555555555443
No 238
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.11 E-value=2.6 Score=34.10 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 217 (548)
..+.-+.....+|+-+.-.+++.++.+.+ .++......+..||.+.|+..++.+++.++-+.|+.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455667777888888888887776533 667777778888888888888888888888887765
No 239
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.10 E-value=5.3 Score=44.27 Aligned_cols=234 Identities=12% Similarity=0.078 Sum_probs=116.6
Q ss_pred chHHHHHHHHHhCC--CchHHHHHHHHHHHCCCCCChh-h---------HHHHHHHhhccCCcHHHHHHHHHHHHhCCCC
Q 038673 18 FLWTALIRGYILQG--HLKDSISLYCSMRREGIGPVSF-T---------LSALFKACTEVLDVSLGQQIHAQTILLGGFT 85 (548)
Q Consensus 18 ~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~-~---------~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 85 (548)
.-.-.+|.+|++.+ ..++|+....+.....+.++.. . -+.+.+.....=|++.|..+.+.- +
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~S------q 864 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQKS------Q 864 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHHh------c
Confidence 34557788899987 6677777766666421111111 0 112222222223444444443322 2
Q ss_pred CChhHHHHHHHHHH-------------HcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhH
Q 038673 86 SDLYVGNTMIGMYV-------------KCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVA 152 (548)
Q Consensus 86 ~~~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~ 152 (548)
.|+.-|-.+++-+- ..+++++|+.-+.++. ...|.-.++.--+.|.+.+|+.++..=.+.--..
T Consensus 865 kDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i 941 (1265)
T KOG1920|consen 865 KDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVI 941 (1265)
T ss_pred cChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheeccCHHHHHHH
Confidence 23333322222221 1234555555544443 3344455555556666666666654333333344
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
|.+....+.+.+.+++|.-+|+..-+ ..-.+.+|-..|++.++..+..++....-. -..+...|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de---~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE---LVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH---HHHHHHHHHHHH
Confidence 55555555666777777776664421 123456677777777777777665332111 222235566666
Q ss_pred hcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHH
Q 038673 233 SKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLF 276 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 276 (548)
...++.-+|-++..+....-... +..|++...+++|+.+-
T Consensus 1010 ~e~~kh~eAa~il~e~~sd~~~a----v~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSDPEEA----VALLCKAKEWEEALRVA 1049 (1265)
T ss_pred HHcccchhHHHHHHHHhcCHHHH----HHHHhhHhHHHHHHHHH
Confidence 66777666666665554322222 22333334455555444
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.51 Score=45.66 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=72.2
Q ss_pred HHHHHcCCHHHHHHHHHhCC--------C---------CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHH
Q 038673 320 DLLGRAGCLEEALKMVEKMP--------V---------EPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYI 382 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~--------~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 382 (548)
..|.+.|++..|..-|++.. . ..-..++..|..++.+.+.+..|.+..++.++++|+|.-+..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 46778899988888877631 1 111334566667788999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHh
Q 038673 383 ILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.-+.+|...|.++.|...|+++.+
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH
Confidence 999999999999999999999865
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.05 E-value=0.51 Score=43.20 Aligned_cols=106 Identities=19% Similarity=0.205 Sum_probs=73.6
Q ss_pred HHccCC--CCChhHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC--------------
Q 038673 141 LFNELP--LKDKVAWTAMVTGYVQN-----AKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG-------------- 199 (548)
Q Consensus 141 ~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-------------- 199 (548)
.|.... ++|-.+|-+++..|... +..+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 56 ~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HY 135 (406)
T KOG3941|consen 56 QFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHY 135 (406)
T ss_pred hhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhC
Confidence 344444 45666676666666543 556666667788888899999999999888765432
Q ss_pred --ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCH-HHHHHHHhcC
Q 038673 200 --VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSI-DDAYRIFVGM 248 (548)
Q Consensus 200 --~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~ 248 (548)
.-+-+.+++++|...|+-| |-.+-..|++++++.+.. .+..+..--|
T Consensus 136 P~QQ~C~I~vLeqME~hGVmP--dkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 136 PQQQNCAIKVLEQMEWHGVMP--DKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred chhhhHHHHHHHHHHHcCCCC--chHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 3346788889999999886 888888888888887753 3333333333
No 242
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=9.5 Score=40.22 Aligned_cols=305 Identities=11% Similarity=-0.007 Sum_probs=174.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCc--HHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDV--SLGQQIHAQTILLGGFTSDLYVGNTMIGM 97 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 97 (548)
-..+|+-++..+.+..|+++-..+...-..- ...|.....-..+..+. +.+......-++.. . -....|....+-
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARR 516 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHH
Confidence 3456777888889999999887776421111 45566655555544322 22222222222221 2 234456677777
Q ss_pred HHHcCChHHHHHHHccCCCC--------CeehHHHHHHHHHhCCChHHHHHHHccCCCC-Chh--------------HHH
Q 038673 98 YVKCGFLGCSRKVFDEMPER--------DVVSWTELIVAYANNGDMESAGGLFNELPLK-DKV--------------AWT 154 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~--------------~~~ 154 (548)
-..+|+.+-|..+++.=+.. +..-+...+.-..+.|+.+-...++-.+... +.. .|-
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~ 596 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYR 596 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHH
Confidence 77899999999998765531 3334455566666777777766665544321 111 121
Q ss_pred HHHH--------HHHHCCChhHHHHHHH--HHH----HCCCCCCHhhHHHHHHHHHccCChhHHHHH----------HHH
Q 038673 155 AMVT--------GYVQNAKPREAIEYFE--RMQ----YAGVETDYVTLVGVISACAQLGVIKYANWV----------CEI 210 (548)
Q Consensus 155 ~li~--------~~~~~g~~~~A~~l~~--~m~----~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~----------~~~ 210 (548)
-+++ .+-+.++..+++.-|. ... ..|..|+ ......++++........+. .+.
T Consensus 597 ~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~ 673 (829)
T KOG2280|consen 597 QFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRT 673 (829)
T ss_pred HHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1111 1112222222222221 100 0122333 33344455544432211111 111
Q ss_pred HH-HcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 038673 211 AE-GSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGV 289 (548)
Q Consensus 211 ~~-~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 289 (548)
+. +.|.. ....+.+--+.-+...|+..+|.++-.+.+-||-..|---+.+++..+++++-+++-+.+..
T Consensus 674 Le~q~~~~--f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks-------- 743 (829)
T KOG2280|consen 674 LEDQFGGS--FVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------- 743 (829)
T ss_pred HHHHhccc--cccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--------
Confidence 11 12322 12333444555666789999999999999999999999999999999999887776665432
Q ss_pred hHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 038673 290 TFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAAN 368 (548)
Q Consensus 290 t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 368 (548)
+.-|.-.+..+.+.|+.+||.+++.+.+-.+ -...+|.+.|++.+|.+..-
T Consensus 744 ----------------------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 744 ----------------------PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ----------------------CCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHH
Confidence 1225556788889999999999998876222 45667788888877766543
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=4.6 Score=36.49 Aligned_cols=206 Identities=13% Similarity=0.102 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
.|..-..+|-...++++|...+.+..+- ..-|...|. .....++|.-+.+++.+.. .-+..++--..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls----Evvdl~eKAs~l 100 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS----EVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHH
Confidence 4555556777778888887766665421 111221111 1223455556666665532 345667778888
Q ss_pred HhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcC
Q 038673 232 YSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPS 311 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~ 311 (548)
|..+|..+.|-..+++.-+ ...+.++++|+++|++...- +.-+..+ ..-
T Consensus 101 Y~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralav-ve~~dr~------------------~ma 149 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAV-VEEDDRD------------------QMA 149 (308)
T ss_pred HHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHH-HhccchH------------------HHH
Confidence 8899988887766665421 23456778888888776542 1111111 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCCch
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-------VEPNG-GVWGALLGACQIHRNPEIAQIAANHLFE----LEPDKIG 379 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~p~~~~ 379 (548)
...|......|.+..++++|-..|.+-. -.|+. ..+-+.|-.+....++..|++.++.--+ ..|++..
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r 229 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSR 229 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHH
Confidence 2345666777888888888877666543 12332 2344555556666789999999888555 5566777
Q ss_pred hHHHHHHHHHHcCCchHHHHHH
Q 038673 380 NYIILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~ 401 (548)
+...|+.+|- .|+.+++..+.
T Consensus 230 ~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 230 SLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhc-cCCHHHHHHHH
Confidence 8888887775 56777766654
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.89 E-value=1.3 Score=36.56 Aligned_cols=70 Identities=20% Similarity=0.126 Sum_probs=52.2
Q ss_pred HHHHHHcCCHHHHHHHHHhCC----CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch-hHHHHHHHH
Q 038673 319 VDLLGRAGCLEEALKMVEKMP----VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG-NYIILSNIY 388 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~ 388 (548)
.....+.|++++|.+.|+.+. ..| ....--.|+.++.+.++++.|...+++.++++|.++. .|.....++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 344557899999999999884 222 2344556778999999999999999999999998753 344444443
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.86 E-value=0.9 Score=45.92 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
.-.+.++.-+-+.|..+.|+++-++-.. -.++..+.|+++.|.+
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------------------------------rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDH------------------------------------RFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHH------------------------------------HHHHHHHCT-HHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHH------------------------------------HhHHHHhcCCHHHHHH
Confidence 3466677777777777777776554322 1245567788888887
Q ss_pred HHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 334 MVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 334 ~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
+.++.. +...|..|-......|+.+.|++.+.+.. -+..|+-.|...|+.+...++.+....+|
T Consensus 340 ~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 340 IAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 776654 67788888888888888888888887754 45666677777787766666666555544
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.79 E-value=5.1 Score=39.21 Aligned_cols=154 Identities=13% Similarity=0.047 Sum_probs=86.8
Q ss_pred HHHHHHhCCChHHHHHHHccCCCC---Ch----hHHHHHHHHHHH---CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038673 125 LIVAYANNGDMESAGGLFNELPLK---DK----VAWTAMVTGYVQ---NAKPREAIEYFERMQYAGVETDYVTLVGVISA 194 (548)
Q Consensus 125 li~~~~~~g~~~~A~~~f~~m~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 194 (548)
++-.|....+++...++.+.+... +. ..--...-++-+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 334566667777777776666533 11 111122334445 67778888888775555556677777766665
Q ss_pred HHc---------cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHH----HHHHHH---hcC------C--C
Q 038673 195 CAQ---------LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSID----DAYRIF---VGM------K--Q 250 (548)
Q Consensus 195 ~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~----~A~~~~---~~~------~--~ 250 (548)
|-. ...+++|...|.+.-+.. | +....-.++..+.-.|... +..++- ..+ . .
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~--~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEIE--P--DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcCC--c--cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 521 123566666666554443 2 3333333333333333311 222222 111 1 1
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
.|-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34456678889999999999999999999975
No 247
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.60 E-value=0.64 Score=46.07 Aligned_cols=65 Identities=12% Similarity=-0.026 Sum_probs=54.3
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038673 148 KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY----VTLVGVISACAQLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 214 (548)
.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|++++|.+.++.+++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36778999999999999999999999987765 5653 35888888899999999999999888875
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.49 E-value=2.9 Score=42.92 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=32.8
Q ss_pred ChHHHHHHHccCCC--CCeehHHHHH-HHHHhCCChHHHHHHHccCCCC-------ChhHHHHHHHHHHHCCChhHHHHH
Q 038673 103 FLGCSRKVFDEMPE--RDVVSWTELI-VAYANNGDMESAGGLFNELPLK-------DKVAWTAMVTGYVQNAKPREAIEY 172 (548)
Q Consensus 103 ~~~~A~~~~~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~l 172 (548)
..+.|.++++.+.+ |+...|...- +.+...|++++|.+.|++.... ....+--+.-.+.-.++|++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34445555555544 4444443322 2334445555555555543211 111222233334444555555555
Q ss_pred HHHHHH
Q 038673 173 FERMQY 178 (548)
Q Consensus 173 ~~~m~~ 178 (548)
|..+.+
T Consensus 328 f~~L~~ 333 (468)
T PF10300_consen 328 FLRLLK 333 (468)
T ss_pred HHHHHh
Confidence 555544
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.42 E-value=3.6 Score=42.21 Aligned_cols=158 Identities=18% Similarity=0.119 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCC-CCh---------hhhHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHh
Q 038673 224 VGSALIDMYSKCGSIDDAYRIFVGMKQ-RNV---------FSYSSMILGFAM----HGRAHAAIQLFGDMVKTETKPNGV 289 (548)
Q Consensus 224 ~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~---------~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ 289 (548)
....++...+=.|+-+.+.+.+....+ .++ ..|..++..++. ....+.|.+++..+.+ .-|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcH
Confidence 344556666666777777666665543 221 245555555444 3467888999999887 356654
Q ss_pred hHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCC------CCChhHHHHHHHHHHhcCCHHHH
Q 038673 290 TFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPV------EPNGGVWGALLGACQIHRNPEIA 363 (548)
Q Consensus 290 t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~ll~~~~~~~~~~~a 363 (548)
-| .-.-...+...|++++|.+.|++... +.....+--+...+....++++|
T Consensus 268 lf-----------------------l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 268 LF-----------------------LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred HH-----------------------HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 43 11223556678999999999996531 11223334444567788899999
Q ss_pred HHHHHHHhhcCCCCchhHHHH-HHHHHHcCCc-------hHHHHHHHHHHh
Q 038673 364 QIAANHLFELEPDKIGNYIIL-SNIYASAGMW-------DDVSRVRRLLKM 406 (548)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~-------~~a~~~~~~m~~ 406 (548)
...+..+.+...-+...|..+ +-+|...|+. ++|.+++++...
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999777666566544 4456777888 888888877654
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=93.39 E-value=3.6 Score=41.02 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh--HHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGN--YIILSN 386 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~ 386 (548)
|......+..++.-.|+++.|..+|++.. +.|| ..+|...-..+.-.|+.++|.+.+++.++++|..... ....++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 45556666677777888999999998885 6787 5566655566777899999999999999999986433 333444
Q ss_pred HHHHcCCchHHHHHH
Q 038673 387 IYASAGMWDDVSRVR 401 (548)
Q Consensus 387 ~~~~~g~~~~a~~~~ 401 (548)
.|... ..++|.+++
T Consensus 417 ~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 417 MYVPN-PLKNNIKLY 430 (458)
T ss_pred HHcCC-chhhhHHHH
Confidence 56654 456666664
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.26 E-value=1.1 Score=41.18 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC----C---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---chhH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKM----P---VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDK---IGNY 381 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~ 381 (548)
...|+.-++.| +.|++.+|..-|... | ..||..-| |..++...|+++.|...|..+.+-.|++ |..+
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 34677777666 567799999998876 2 44555555 7789999999999999999999966654 5688
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 382 IILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.-|+.+..+.|+.++|..++++..++
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 89999999999999999999998754
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.16 E-value=4.3 Score=33.66 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=26.1
Q ss_pred HHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 038673 56 SALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC 101 (548)
Q Consensus 56 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 101 (548)
..++..+...+.......+++.+++.+ ..+....|.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH
Confidence 344555555555666666666666655 35566666666666654
No 253
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.15 E-value=5 Score=34.34 Aligned_cols=132 Identities=11% Similarity=0.085 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcC--CHHHHHHHHHHHHHcC
Q 038673 206 WVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHG--RAHAAIQLFGDMVKTE 283 (548)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g 283 (548)
++.+.+.+.++.| +...+..+++.+.+.|++.....++.--.-+|....-..+-.+.... -..-|++++.++..
T Consensus 15 EYirSl~~~~i~~--~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~-- 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPV--QHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT-- 90 (167)
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh--
Confidence 3444455666664 66677777777777777777666665443333332222221111110 13344555555442
Q ss_pred CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHH
Q 038673 284 TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIA 363 (548)
Q Consensus 284 ~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a 363 (548)
.+..+++.+...|++-+|+++.++.. .-+...-..++.+..+.+|...-
T Consensus 91 ------------------------------~~~~iievLL~~g~vl~ALr~ar~~~-~~~~~~~~~fLeAA~~~~D~~lf 139 (167)
T PF07035_consen 91 ------------------------------AYEEIIEVLLSKGQVLEALRYARQYH-KVDSVPARKFLEAAANSNDDQLF 139 (167)
T ss_pred ------------------------------hHHHHHHHHHhCCCHHHHHHHHHHcC-CcccCCHHHHHHHHHHcCCHHHH
Confidence 37778889999999999999998864 12223334566666666665555
Q ss_pred HHHHHHHhh
Q 038673 364 QIAANHLFE 372 (548)
Q Consensus 364 ~~~~~~~~~ 372 (548)
-.+++...+
T Consensus 140 ~~V~~ff~~ 148 (167)
T PF07035_consen 140 YAVFRFFEE 148 (167)
T ss_pred HHHHHHHHH
Confidence 555444443
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=93.09 E-value=4.1 Score=40.63 Aligned_cols=155 Identities=10% Similarity=0.112 Sum_probs=98.6
Q ss_pred CCHHHHHHHHhcCCCCCh---hhh--HHHHHHHHhc-----CCHHHHHHHHHHHHH-cCCCCCHhhHHHHHHHHhhcCCc
Q 038673 236 GSIDDAYRIFVGMKQRNV---FSY--SSMILGFAMH-----GRAHAAIQLFGDMVK-TETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 236 g~~~~A~~~~~~~~~~~~---~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
..+..++. -......+. ..| ..++.|.... ...+.|+.+|.+... +.+.|+...--+.+.-|-
T Consensus 232 ~~~~~~E~-~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h----- 305 (458)
T PRK11906 232 QTVHKPER-SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECH----- 305 (458)
T ss_pred hhhhhhhh-hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHH-----
Confidence 44444444 222323344 566 6666665542 235688889999882 236676543333332221
Q ss_pred cCCCCcCHHHHHHHHHHHH-HcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 305 CYGVSPSTDHYACMVDLLG-RAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
+......+. ......+|.++.++.. +.| |+.....+-.+....++.+.|...|++...++|+.+.+|
T Consensus 306 ----------~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~ 375 (458)
T PRK11906 306 ----------MSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLY 375 (458)
T ss_pred ----------HHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHH
Confidence 111111111 1334556666666553 333 466666666666777889999999999999999999999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 382 IILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
...+....-.|+.++|.+.+++..+
T Consensus 376 ~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 376 YYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999999999999887543
No 255
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.84 E-value=3.6 Score=35.20 Aligned_cols=36 Identities=14% Similarity=-0.046 Sum_probs=23.5
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHH
Q 038673 38 SLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQ 73 (548)
Q Consensus 38 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~ 73 (548)
+.++.+.+.|++|+...+..+++.+.+.|.+..-.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 444555566777777777777777777776554433
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.79 E-value=1.2 Score=35.89 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=74.3
Q ss_pred HHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----chhHHHHHHHHHHcCC
Q 038673 320 DLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDK----IGNYIILSNIYASAGM 393 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 393 (548)
-++...|+++.|++.|.+.- +-| ....||.-..+++-.|+.++|..-+++.+++..+. -..|+.-+..|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 46778999999999998774 333 58889999999999999999999999999954332 2367777788999999
Q ss_pred chHHHHHHHHHHhCCC
Q 038673 394 WDDVSRVRRLLKMTGL 409 (548)
Q Consensus 394 ~~~a~~~~~~m~~~g~ 409 (548)
-+.|..=|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999988877765
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.39 E-value=0.27 Score=29.16 Aligned_cols=32 Identities=25% Similarity=0.127 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 345 GVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 345 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666667777777777777777777777775
No 258
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.98 E-value=0.44 Score=28.11 Aligned_cols=32 Identities=28% Similarity=0.212 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038673 346 VWGALLGACQIHRNPEIAQIAANHLFELEPDK 377 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 377 (548)
.|..+-..+...|++++|.+.+++.++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 34455566667777777777777777776653
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.95 E-value=15 Score=37.01 Aligned_cols=186 Identities=17% Similarity=0.196 Sum_probs=102.7
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
...|-.+. +..+.+.-+++=++..+ +.||-.+...++ +--....+.++++++++..+.|-. ... ......
T Consensus 172 q~IMq~AW-RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~---~lg-~s~~~~-- 241 (539)
T PF04184_consen 172 QEIMQKAW-RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA---SLG-KSQFLQ-- 241 (539)
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH---hhc-hhhhhh--
Confidence 33344443 33334444444444433 355554433332 222345678889999888776532 000 000011
Q ss_pred hcCCCHHHHHHHHhcCCCCC----hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCC
Q 038673 233 SKCGSIDDAYRIFVGMKQRN----VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGV 308 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 308 (548)
..|. .++....++ +..-..+..+.-+.|+.++|++.|++|.+.. |...
T Consensus 242 -~~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~--p~~~------------------- 293 (539)
T PF04184_consen 242 -HHGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF--PNLD------------------- 293 (539)
T ss_pred -cccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC--Cccc-------------------
Confidence 0111 111122222 2333446667778899999999999998742 2211
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCC--hhHHHHHHHHHHhcCC---------------HHHHHHHHHH
Q 038673 309 SPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V-EPN--GGVWGALLGACQIHRN---------------PEIAQIAANH 369 (548)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~ll~~~~~~~~---------------~~~a~~~~~~ 369 (548)
+......|+..|...+.+.++..++.+-. + -|. ...|+..+-..+..++ -..|.++..+
T Consensus 294 --~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~R 371 (539)
T PF04184_consen 294 --NLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHR 371 (539)
T ss_pred --hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHH
Confidence 22346678899999999999999998875 2 244 4566665544443333 1235567777
Q ss_pred HhhcCCCCc
Q 038673 370 LFELEPDKI 378 (548)
Q Consensus 370 ~~~~~p~~~ 378 (548)
+.+.+|.-+
T Consensus 372 AvefNPHVp 380 (539)
T PF04184_consen 372 AVEFNPHVP 380 (539)
T ss_pred HHHhCCCCc
Confidence 777777655
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=11 Score=35.26 Aligned_cols=117 Identities=11% Similarity=0.049 Sum_probs=74.6
Q ss_pred HhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCC-CeehHH---HHHHHHHhCCChH
Q 038673 61 ACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPER-DVVSWT---ELIVAYANNGDME 136 (548)
Q Consensus 61 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~---~li~~~~~~g~~~ 136 (548)
.....+++..+...+....+.. +.+...--.|+.+|...|+.+.|..+++.++.. ....|. +-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4556788888888888888875 556677778888888899999999998888752 111121 2233333333333
Q ss_pred HHHHHHccCC-CC-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 038673 137 SAGGLFNELP-LK-DKVAWTAMVTGYVQNAKPREAIEYFERMQYA 179 (548)
Q Consensus 137 ~A~~~f~~m~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 179 (548)
+...+-.+.. .| |...--.+...+...|+.++|++.+-.+.+.
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222222222 23 5566667777788888888888777666554
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.84 E-value=8.8 Score=34.09 Aligned_cols=62 Identities=27% Similarity=0.188 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
+..+...+...+.+++|...+.... ..|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 205 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3334444444444445544444432 2222 222222222222334445555555555544443
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.82 E-value=8.9 Score=34.07 Aligned_cols=220 Identities=18% Similarity=0.121 Sum_probs=148.7
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHH
Q 038673 164 AKPREAIEYFERMQYAGVE-TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~ 242 (548)
+....+...+......... .....+......+...+.+..+...+.........+ .....+..+...+...+++..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP-NLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHhhHHHHH
Confidence 4455555555555443221 124556666667777777777777777666521111 36677777777888888888888
Q ss_pred HHHhcCCC--CCh-hhhHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHH
Q 038673 243 RIFVGMKQ--RNV-FSYSSMIL-GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACM 318 (548)
Q Consensus 243 ~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~l 318 (548)
+.+..... ++. ........ .+...|+.+.|...+.+... ..|.. ......+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~--------------------~~~~~~~~~~ 173 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPEL--------------------NELAEALLAL 173 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCc--------------------cchHHHHHHh
Confidence 88887764 221 22333333 68889999999999999855 33320 0011223333
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCch
Q 038673 319 VDLLGRAGCLEEALKMVEKMP-VEPN--GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWD 395 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 395 (548)
...+...++.++|...+.+.. ..|+ ...+..+-..+...++.+.+...+.......|.....+..+...+...|.++
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHH
Confidence 334777899999999998774 3333 5677777888889999999999999999999886556777777777777889
Q ss_pred HHHHHHHHHHh
Q 038673 396 DVSRVRRLLKM 406 (548)
Q Consensus 396 ~a~~~~~~m~~ 406 (548)
++...+....+
T Consensus 254 ~~~~~~~~~~~ 264 (291)
T COG0457 254 EALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
No 263
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.71 E-value=6.9 Score=34.74 Aligned_cols=177 Identities=18% Similarity=0.174 Sum_probs=101.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChh-hhHHHHH--HHHhcCCHHHHHH
Q 038673 198 LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVF-SYSSMIL--GFAMHGRAHAAIQ 274 (548)
Q Consensus 198 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~ 274 (548)
.|-...|+-=|.+..... | .-+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+=+ ++.--|++.-|.+
T Consensus 78 lGL~~LAR~DftQaLai~--P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAIR--P-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhcC--C-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 344444444444444433 5 47889999999999999999999999998875543 2322222 2334588888887
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH-HhCCCCCChhHHHHHHHH
Q 038673 275 LFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMV-EKMPVEPNGGVWGALLGA 353 (548)
Q Consensus 275 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~ 353 (548)
=|...-+. .|+.. -...|--+ --+.-++.+|..-+ ++.. +.|..-|...|-.
T Consensus 155 d~~~fYQ~--D~~DP---------------------fR~LWLYl---~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~ 207 (297)
T COG4785 155 DLLAFYQD--DPNDP---------------------FRSLWLYL---NEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVE 207 (297)
T ss_pred HHHHHHhc--CCCCh---------------------HHHHHHHH---HHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHH
Confidence 66665543 22211 11111111 11233455554433 3332 4555666665533
Q ss_pred HHh-cCCHHHHHHHHHHHhhcCCCC-------chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 354 CQI-HRNPEIAQIAANHLFELEPDK-------IGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 354 ~~~-~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+.- +=..+ .+++++.+...++ ..+|..|+.-|...|..++|..+|+.....
T Consensus 208 ~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 208 FYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 322 11112 2333333322222 248889999999999999999999987643
No 264
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.65 E-value=1.3 Score=37.26 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=31.9
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
...++.+.++.++..+.-+.|..+..-..-+..+...|+|.+|.++++.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 44556666666666666666666655555566666666666666666665443
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=23 Score=38.09 Aligned_cols=138 Identities=9% Similarity=0.069 Sum_probs=84.2
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHH
Q 038673 27 YILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGC 106 (548)
Q Consensus 27 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 106 (548)
+-+.|++++|...|-+-+.. +.| ..+++-+........-..+++.+.+.| -.+..--+.|+.+|.+.++.++
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~g--la~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKG--LANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcc--cccchhHHHHHHHHHHhcchHH
Confidence 34567788887777665532 223 234445555555556666677777777 4555566788999999999988
Q ss_pred HHHHHccCCCCCee-hHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 038673 107 SRKVFDEMPERDVV-SWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERM 176 (548)
Q Consensus 107 A~~~~~~m~~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 176 (548)
-.++.+...+-... -....+..+.+.+-.++|.-+-.+... +...... .+-..+++++|++.+..|
T Consensus 450 L~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 88888777632221 244556666666666666655443332 2222222 234457788888777665
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.34 E-value=4.7 Score=38.16 Aligned_cols=107 Identities=11% Similarity=0.003 Sum_probs=44.5
Q ss_pred CCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHH----HHHHHHHhCCChHHH
Q 038673 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWT----ELIVAYANNGDMESA 138 (548)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~----~li~~~~~~g~~~~A 138 (548)
|+..+|-..++++++. +|.|...++-.=++|.-.|+.+.-...++++.. +|...|. ...-++...|-+++|
T Consensus 117 g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4444444444444443 344444444444444444544444444444432 2322221 112233344555555
Q ss_pred HHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHH
Q 038673 139 GGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFE 174 (548)
Q Consensus 139 ~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~ 174 (548)
++.-++..+- |.-+-.+....+-.+|+..++.++..
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 5444443322 22223333334444455555544433
No 267
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.19 E-value=22 Score=37.96 Aligned_cols=209 Identities=17% Similarity=0.158 Sum_probs=89.9
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCc-------HHHHHHHHHHHHhCCCCCChh-
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDV-------SLGQQIHAQTILLGGFTSDLY- 89 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~- 89 (548)
-.| ++|--+.|.|++++|.++...... ........|...++++....+- +....-+.+.++.. ...|++
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~-~~~DpyK 189 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS-TDGDPYK 189 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT--TTS-HHH
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC-CCCChHH
Confidence 356 467778899999999999866654 3556667788889988765332 34445555555443 222544
Q ss_pred --HHHHHHHHHHHcCChHHHH-HHHccC-----------CC--C------CeehHHHHHHHHHhCCChHHHHHHHccCCC
Q 038673 90 --VGNTMIGMYVKCGFLGCSR-KVFDEM-----------PE--R------DVVSWTELIVAYANNGDMESAGGLFNELPL 147 (548)
Q Consensus 90 --~~~~li~~~~~~g~~~~A~-~~~~~m-----------~~--~------~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 147 (548)
+|..+ ++|.-...-. .+...+ .+ + +..++..+=+...+-|. ..|.. .
T Consensus 190 ~AvY~il----g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge-----~~F~~--~ 258 (613)
T PF04097_consen 190 RAVYKIL----GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE-----SHFNA--G 258 (613)
T ss_dssp HHHHHHH----HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G-----GGCTT---
T ss_pred HHHHHHH----hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch-----hhccc--c
Confidence 33333 3332211100 110000 00 0 01122111111111110 11222 1
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 148 KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
.++..| ...+.-.|+++.|++++.+ ..+...|.+.+...+.-+.-.+-.+... ..+....... +...-+..
T Consensus 259 ~~p~~Y---f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~-~~~ln~ar 329 (613)
T PF04097_consen 259 SNPLLY---FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGD-PPPLNFAR 329 (613)
T ss_dssp -----H---HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------HHH
T ss_pred hhHHHH---HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCC-CCCcCHHH
Confidence 122222 3445667999999998876 2344667777776665543322221111 2222211110 01245677
Q ss_pred HHHHHhc---CCCHHHHHHHHhcCC
Q 038673 228 LIDMYSK---CGSIDDAYRIFVGMK 249 (548)
Q Consensus 228 li~~y~~---~g~~~~A~~~~~~~~ 249 (548)
||..|.+ ..+..+|.+.|--+.
T Consensus 330 LI~~Y~~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 330 LIGQYTRSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HHHHHHHTTTTT-HHHHHHHHHGGG
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 8888876 457788888776665
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.12 E-value=1.2 Score=41.55 Aligned_cols=61 Identities=23% Similarity=0.210 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 346 VWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
++..++..+...|+.+.+...++++++.+|-+...|..++.+|.+.|+...|++.++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445566777888899999999999999999999999999999999999999999998875
No 269
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.79 E-value=0.37 Score=40.33 Aligned_cols=84 Identities=11% Similarity=0.049 Sum_probs=48.8
Q ss_pred HHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHH
Q 038673 58 LFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMES 137 (548)
Q Consensus 58 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 137 (548)
+++.+.+.+.+.....+++.+.+.+ ...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 4555666666667777777777655 455677777777777777766777776663332 222344444555555555
Q ss_pred HHHHHccC
Q 038673 138 AGGLFNEL 145 (548)
Q Consensus 138 A~~~f~~m 145 (548)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 55544443
No 270
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.76 E-value=2.1 Score=39.38 Aligned_cols=97 Identities=8% Similarity=-0.101 Sum_probs=74.7
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCC--CChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCC-CCChhHHHHHH
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRREGIG--PVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGF-TSDLYVGNTMI 95 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li 95 (548)
.|+.-+.. .+.|++..|...|...++.... -....+-.|..++...|+++.|..+|..+.+.-+- +.-+...--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 48877765 4677899999999999985311 12345778899999999999999999999886411 22245666777
Q ss_pred HHHHHcCChHHHHHHHccCCC
Q 038673 96 GMYVKCGFLGCSRKVFDEMPE 116 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~m~~ 116 (548)
....+.|+.++|..+|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 788899999999999988775
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.69 E-value=0.46 Score=28.76 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 380 NYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998854
No 272
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.67 E-value=1.6 Score=36.15 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=39.0
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
...++.+.++.+++.+.-+.|+.+..-..-+..+...|+|++|.++++...+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 346677777777777777777777777777777777777777777777776554
No 273
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=90.67 E-value=6 Score=30.25 Aligned_cols=60 Identities=25% Similarity=0.273 Sum_probs=42.3
Q ss_pred HHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHH
Q 038673 127 VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLV 189 (548)
Q Consensus 127 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 189 (548)
..+...|++++|..+.+.+..||...|-++-.. +.|..+++..-+.+|..+| .|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 456677888888888888888888888776553 5666677777777777776 55554543
No 274
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.31 E-value=14 Score=33.79 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=44.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 352 GACQIHRNPEIAQIAANHLFELEPDKI---GNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.-|.+.|.+..|..-++.+++.-|+.+ ..+..|.++|...|..++|...-+-+..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 567899999999999999999766643 4666788889999999999988776643
No 275
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.04 E-value=0.36 Score=28.85 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=23.6
Q ss_pred HHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHH
Q 038673 208 CEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242 (548)
Q Consensus 208 ~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~ 242 (548)
|+++++.. | .+..+|+.|...|...|++++|+
T Consensus 2 y~kAie~~--P-~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--P-NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--C-CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455555 4 48888888888888888888875
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.96 E-value=18 Score=34.28 Aligned_cols=118 Identities=8% Similarity=0.012 Sum_probs=59.0
Q ss_pred HhCCCchHHHHHHHHHHHCC--CCCChh------hHHHHHHHhhccC-CcHHHHHHHHHHHHh----C---CCCCCh---
Q 038673 28 ILQGHLKDSISLYCSMRREG--IGPVSF------TLSALFKACTEVL-DVSLGQQIHAQTILL----G---GFTSDL--- 88 (548)
Q Consensus 28 ~~~g~~~~A~~~~~~m~~~g--~~p~~~------~~~~ll~a~~~~~-~~~~a~~~~~~~~~~----~---~~~~~~--- 88 (548)
.+.|+.+.|...+.+....- ..|+.. .|+.-.. ....+ +++.|...+++..+. + ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46788999999998877632 233322 1222222 23344 777776666655443 2 122222
Q ss_pred --hHHHHHHHHHHHcCChHH---HHHHHccCCC--CC-eehHHHHHHHHHhCCChHHHHHHHccCC
Q 038673 89 --YVGNTMIGMYVKCGFLGC---SRKVFDEMPE--RD-VVSWTELIVAYANNGDMESAGGLFNELP 146 (548)
Q Consensus 89 --~~~~~li~~~~~~g~~~~---A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~ 146 (548)
.+...|+.+|...+..+. |.++++.+.. ++ +.++-.-+..+.+.++.+++.+.+.+|.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 345566666666665443 3334333322 22 2333333444444555555555555544
No 277
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.73 E-value=17 Score=33.87 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=71.0
Q ss_pred CCcCHHHHHHHHHHHHH-cCCHHHHHHHHHhCC---CC-------CC-----hhHHHHHH----HHHHhcCCHHHHHHHH
Q 038673 308 VSPSTDHYACMVDLLGR-AGCLEEALKMVEKMP---VE-------PN-----GGVWGALL----GACQIHRNPEIAQIAA 367 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~---~~-------p~-----~~~~~~ll----~~~~~~~~~~~a~~~~ 367 (548)
.+-|..-|...+...-+ ...++++.+++...+ +. -| ..+|..++ +.|...|.+.+|.++.
T Consensus 223 ~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~ 302 (361)
T COG3947 223 PKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLH 302 (361)
T ss_pred ccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44466666666554432 345677777666552 00 11 22344444 6789999999999999
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 368 NHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 368 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
++++.++|-+...+..|++.|+..|+--+|.+-++++.
T Consensus 303 qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 303 QRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 99999999999999999999999999888887777765
No 278
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.70 E-value=16 Score=33.47 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=15.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 038673 261 LGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
.-|.+.|.+..|..-+++|++.
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc
Confidence 4566677777777777777764
No 279
>PRK09687 putative lyase; Provisional
Probab=89.64 E-value=19 Score=34.12 Aligned_cols=195 Identities=10% Similarity=-0.006 Sum_probs=94.2
Q ss_pred CCChhHHHHHHHHHHHCCCh----hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChh--HHHHHHHHHHHcCCCCCC
Q 038673 147 LKDKVAWTAMVTGYVQNAKP----REAIEYFERMQYAGVETDYVTLVGVISACAQLGVIK--YANWVCEIAEGSGFGPIN 220 (548)
Q Consensus 147 ~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~p~~ 220 (548)
.+|...-...+.++.+.|+. ++++.++..+... .||...-...+.+++..+... ........+...-.. .
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D--~ 140 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD--K 140 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC--C
Confidence 34445555555555555543 3556666655332 344444444555554443211 011122222222122 2
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHG-RAHAAIQLFGDMVKTETKPNGVTFIGVLTACS 299 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 299 (548)
+..+-...+.++++.|+.+....+..-+..+|...-..-+.++...+ +...+...+..+..
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~------------------ 202 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ------------------ 202 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc------------------
Confidence 45566666777777776444433444444455544444444444432 13345555555443
Q ss_pred hcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 300 HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
.++..+-...+.++++.|+..-.-.+++.+. .++ .....+.++...|+. .|...+..+.+.+|+
T Consensus 203 ---------D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 203 ---------DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred ---------CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 1233444555666677776433333333333 233 233555667777764 577777777665663
No 280
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.57 E-value=2.2 Score=37.23 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=69.7
Q ss_pred HHHHHcCCHHHHHHHHHhCC-CCCC-hh-----HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 038673 320 DLLGRAGCLEEALKMVEKMP-VEPN-GG-----VWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAG 392 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~-~~p~-~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 392 (548)
.-+.+.|++++|..-|.... .-|. .. .|..-..+..+.+..+.|+.-..+.++++|.+..+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34567899999998887663 2233 22 22223356788999999999999999999998888888889999999
Q ss_pred CchHHHHHHHHHHhCC
Q 038673 393 MWDDVSRVRRLLKMTG 408 (548)
Q Consensus 393 ~~~~a~~~~~~m~~~g 408 (548)
++++|++=++.+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999987644
No 281
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.36 E-value=0.98 Score=28.74 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRRE 46 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 46 (548)
.|..+...|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666653
No 282
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.15 E-value=5.3 Score=32.31 Aligned_cols=50 Identities=12% Similarity=-0.033 Sum_probs=23.7
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccC
Q 038673 63 TEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEM 114 (548)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 114 (548)
+..|+++.|.+.|.+.+.. .+.....||.-..+|--.|+.++|++-+++.
T Consensus 54 aE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 3444555555555544443 2344444555555554455554444444443
No 283
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.10 E-value=18 Score=34.27 Aligned_cols=62 Identities=13% Similarity=-0.047 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 346 VWGALLGACQIHRNPE---IAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+...+..++...+..+ +|..+.+.+..-.|+.+..+..-+.++.+.++.+++.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555556666666544 3444555555566777777777777777777777777777777643
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.82 E-value=13 Score=31.38 Aligned_cols=90 Identities=18% Similarity=0.093 Sum_probs=61.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V 340 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 340 (548)
.-...++.+++..++..|.- ++|..... -..-...+.+.|++.+|.++|+++. -
T Consensus 19 ~al~~~~~~D~e~lL~ALrv--LRP~~~e~-----------------------~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV--LRPEFPEL-----------------------DLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHH--hCCCchHH-----------------------HHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34567789999999999887 56664432 2223345678999999999999986 3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 341 EPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 341 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
.|....-..|+..|.....-..-....+.+++..++
T Consensus 74 ~~~~p~~kALlA~CL~~~~D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 74 APGFPYAKALLALCLYALGDPSWRRYADEVLESGAD 109 (160)
T ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHhcCCC
Confidence 344555567777776666555566666666665553
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.72 E-value=1 Score=27.16 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQ 177 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~ 177 (548)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46667777777777777777777643
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.57 E-value=2.9 Score=39.07 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=58.1
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHhhH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK-----TETKPNGVTF 291 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~ 291 (548)
-..++..++..+..+|+.+.+...++++.. -+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 556788899999999999999999998875 3667899999999999999999999998876 3455544443
No 287
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.67 E-value=10 Score=32.44 Aligned_cols=118 Identities=18% Similarity=0.132 Sum_probs=52.2
Q ss_pred HhCCChHHHHHHHccCCCCChhHHHHHH-----HHHHHCCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHH--HHccCCh
Q 038673 130 ANNGDMESAGGLFNELPLKDKVAWTAMV-----TGYVQNAKPREAIEYFERMQYAGVETDYV-TLVGVISA--CAQLGVI 201 (548)
Q Consensus 130 ~~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~--~~~~g~~ 201 (548)
++.|..++|+.-|..+.+.+--.|-.|. ....+.|+..+|...|++.-...-.|-.. -...|=.+ +...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3444445555555554433333332222 23445566666666666654433233222 11111111 2344555
Q ss_pred hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 202 KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
++...-.+-+...+-. .....-.+|.-+-.+.|++.+|.+.|..+.
T Consensus 149 ~dV~srvepLa~d~n~--mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGDGNP--MRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCCCCh--hHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 5444444333222221 334444555555556666666666665554
No 288
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.51 E-value=8.3 Score=36.59 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=21.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcC
Q 038673 265 MHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302 (548)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 302 (548)
-.|+..+|-..++++++. .+.|-..+.-.=.+|...|
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G 151 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNG 151 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhcc
Confidence 367788888888888874 3334344433334444444
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.40 E-value=10 Score=32.98 Aligned_cols=96 Identities=16% Similarity=0.079 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChH------
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYV--TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNV------ 222 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~------ 222 (548)
..+..+...|.+.|+.++|++.|.++......|... .+-.++..+...+++..+.....++...-..+ .+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~-~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG-GDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-chHHHHHHH
Confidence 367777888888888888888888887765444332 35566777777788887777776665432221 122
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
.+|..|. +...+++..|-+.|-...
T Consensus 116 k~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHH--HHHhchHHHHHHHHHccC
Confidence 2222222 233567777777776654
No 290
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.34 E-value=3.8 Score=31.10 Aligned_cols=62 Identities=13% Similarity=0.025 Sum_probs=46.8
Q ss_pred chHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 33 LKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 33 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
.-++.+-++.+....+.|++....+.++||.+.+|+..|.++++-+.... ..+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~--~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC--GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cCchhhHHHHHH
Confidence 34566667777777888999999999999999999999999999776332 224456666554
No 291
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.11 E-value=10 Score=36.44 Aligned_cols=221 Identities=12% Similarity=0.004 Sum_probs=129.4
Q ss_pred HHhCCCchHHHHHHHHHHHCC--CCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC-CCCCC---hhHHHHHHHHHHH
Q 038673 27 YILQGHLKDSISLYCSMRREG--IGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLG-GFTSD---LYVGNTMIGMYVK 100 (548)
Q Consensus 27 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~---~~~~~~li~~~~~ 100 (548)
+.+..+.++|+..+.+-..+- ..--..+|..+..+.+..|.++++...--..++.- ..... ...|-.|.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666766666555421 11123466666677777777666554332222211 01112 2345566666666
Q ss_pred cCChHHHHHHHccCCC-C------C-eehHHHHHHHHHhCCChHHHHHHHccCC-------CC--ChhHHHHHHHHHHHC
Q 038673 101 CGFLGCSRKVFDEMPE-R------D-VVSWTELIVAYANNGDMESAGGLFNELP-------LK--DKVAWTAMVTGYVQN 163 (548)
Q Consensus 101 ~g~~~~A~~~~~~m~~-~------~-~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~--~~~~~~~li~~~~~~ 163 (548)
.-++.+++.+-..-.. | + -....+|..++...+.++++++.|+... ++ ....+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 6666666655433221 1 1 1123346667777778888888877643 22 345788899999999
Q ss_pred CChhHHHHHHHHHHH----CCCCCCHh-----hHHHHHHHHHccCChhHHHHHHHHHH----HcCCCCCChHhHHHHHHH
Q 038673 164 AKPREAIEYFERMQY----AGVETDYV-----TLVGVISACAQLGVIKYANWVCEIAE----GSGFGPINNVVVGSALID 230 (548)
Q Consensus 164 g~~~~A~~l~~~m~~----~g~~p~~~-----t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~~~~~~~li~ 230 (548)
.++++|+-+..+... -++..-.. ....+.-++-..|.+..|.+.-++.. ..|-.| ........+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra-~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA-LQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH-HHHHHHHHHHH
Confidence 999998877665432 22221111 22234445666777777777666654 456554 45556677889
Q ss_pred HHhcCCCHHHHHHHHhcC
Q 038673 231 MYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 231 ~y~~~g~~~~A~~~~~~~ 248 (548)
.|-..|+.+.|+.-|+..
T Consensus 255 IyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHhcccHhHHHHHHHHH
Confidence 999999999998877764
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.68 E-value=1.5 Score=25.80 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPN 287 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 287 (548)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3677788888888888888888888877 4443
No 293
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.67 E-value=15 Score=37.03 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=29.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC--CchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 350 LLGACQIHRNPEIAQIAANHLFELEPD--KIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 350 ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
|-.++.+.|+.++|.+.++.+.+..|. +......|++.+...+.+.++..++.+-.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444455555555555555555554443 23345555555555555555555555543
No 294
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.62 E-value=10 Score=31.36 Aligned_cols=61 Identities=15% Similarity=-0.048 Sum_probs=29.4
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 038673 157 VTGYVQNAKPREAIEYFERMQYAGV--ETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 157 i~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 217 (548)
.....+.|++++|.+.|+.+...=- +-....-..++.++.+.++++.|...++..++..+.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3334455566666666555554310 111223334455555555555555555555555433
No 295
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.09 E-value=1.4 Score=25.89 Aligned_cols=31 Identities=23% Similarity=0.117 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 346 VWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
+|..+-..+...|+.+.|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3444555666666666666666666666653
No 296
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.92 E-value=4.2 Score=31.19 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 35 DSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 35 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
+..+-++.+....+.|++....+.|+||.+.+++..|.++++-+...- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~--~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC--GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cChHHHHHHHHH
Confidence 556666777777888999999999999999999999999999876653 333337776654
No 297
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.71 E-value=96 Score=37.92 Aligned_cols=305 Identities=12% Similarity=0.010 Sum_probs=169.0
Q ss_pred HHHHHHHHcCChHHHHHHHccC----CCCC-eehHH-HHHHHHHhCCChHHHHHHHcc-CCCCChhHHHHHHHHHHHCCC
Q 038673 93 TMIGMYVKCGFLGCSRKVFDEM----PERD-VVSWT-ELIVAYANNGDMESAGGLFNE-LPLKDKVAWTAMVTGYVQNAK 165 (548)
Q Consensus 93 ~li~~~~~~g~~~~A~~~~~~m----~~~~-~~~~~-~li~~~~~~g~~~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~ 165 (548)
.|..+-.+|+.+..|...++.- .+.+ ...+. .+...|+.-+++|....+... ...++ ...-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555667889999999998883 2211 12233 333477888887777666552 22222 2334455667899
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHH-HHHHHHHhcCCCHHHHHHH
Q 038673 166 PREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVG-SALIDMYSKCGSIDDAYRI 244 (548)
Q Consensus 166 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-~~li~~y~~~g~~~~A~~~ 244 (548)
+..|...|+.+.+.+ ++...+++.++......|.++...-..+-......+ ....+ +.=+.+--+.++++.....
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se---~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE---EVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCH---HHHHHHHHHHHHHhhhcchhhhhhh
Confidence 999999999998764 334667888887777778777776655544433322 23233 3334444677777777766
Q ss_pred HhcCCCCChhhhHHH-HH-HHHhcC--CHHHHHHHHHHHHHcCCCC---------CHhhHHHHHHHHhhcCC-----ccC
Q 038673 245 FVGMKQRNVFSYSSM-IL-GFAMHG--RAHAAIQLFGDMVKTETKP---------NGVTFIGVLTACSHVGL-----KCY 306 (548)
Q Consensus 245 ~~~~~~~~~~~~~~l-i~-~~~~~g--~~~~A~~l~~~m~~~g~~p---------~~~t~~~ll~a~~~~~~-----~~~ 306 (548)
.. ..+..+|.+. +. ...+.. +.-.-.++.+.+.+.-+.| -...|..++....-... ...
T Consensus 1541 l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~ 1617 (2382)
T KOG0890|consen 1541 LS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELK 1617 (2382)
T ss_pred hh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 65 4556666655 22 222221 1111112233222221111 01223333333222111 111
Q ss_pred CCCcC------HHHHHH---HHHHHHHcCCHHHHHH-HHHhCCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038673 307 GVSPS------TDHYAC---MVDLLGRAGCLEEALK-MVEKMPVEPN-----GGVWGALLGACQIHRNPEIAQIAANHLF 371 (548)
Q Consensus 307 ~~~p~------~~~~~~---li~~~~~~g~~~~A~~-~~~~m~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 371 (548)
+..++ ..-|.. ..+.+.+...+--|.+ .+......|+ ..+|-.....++..|..+.|....-.+.
T Consensus 1618 ~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1618 KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 11111 111211 1222222111111111 0111112222 5678888889999999999999888877
Q ss_pred hcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 372 ELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 372 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
+..+ +..+.-.+..+...|+-..|+.+++...+...
T Consensus 1698 e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1698 ESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 7663 34788889999999999999999998876554
No 298
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.59 E-value=21 Score=34.40 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=9.6
Q ss_pred ccccCCCcchhhhhhhh
Q 038673 505 LRICEDCHLFMCGASQV 521 (548)
Q Consensus 505 l~~~~~~~~~~~~~~~~ 521 (548)
-|-|+.|. |++|.|
T Consensus 405 ~rsCP~Cr---klrSs~ 418 (518)
T KOG1941|consen 405 TRSCPNCR---KLRSSM 418 (518)
T ss_pred CCCCccHH---HHHhhc
Confidence 37788887 666643
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.32 E-value=16 Score=30.43 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=45.8
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC-hhhhHHHHHHHHhcCCHHHHHHH
Q 038673 197 QLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN-VFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l 275 (548)
..++++++..++..+.-..+. ....-..-.-.+...|++++|.++|+++.+.. ...|..-+.++|-.-..|-....
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~---~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN---LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC---ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence 356666666666666555433 33333333444566777777777777776543 22444444444433333333322
Q ss_pred H-HHHHHcCCCCCHhh
Q 038673 276 F-GDMVKTETKPNGVT 290 (548)
Q Consensus 276 ~-~~m~~~g~~p~~~t 290 (548)
+ .++.+.|-.|+...
T Consensus 99 ~A~~~le~~~~~~a~~ 114 (153)
T TIGR02561 99 HADEVLARDADADAVA 114 (153)
T ss_pred HHHHHHHhCCCHhHHH
Confidence 2 33344444444443
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.19 E-value=39 Score=32.97 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=55.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 342 PNGGVWGALLGACQIHRNPEIAQIAANHLFELEP----DKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 342 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
....+|..+...+++.|.++.|...+.++....+ ..+.....-+..+...|+-++|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3467888889999999999999999999888542 1355677778889999999999999888876433
No 301
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.09 E-value=30 Score=35.82 Aligned_cols=164 Identities=20% Similarity=0.187 Sum_probs=108.2
Q ss_pred CeehHHHHHH-----HHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 038673 118 DVVSWTELIV-----AYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVI 192 (548)
Q Consensus 118 ~~~~~~~li~-----~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 192 (548)
+++.|..++. ...-.|+++.|..++-.+++ ...+.++..+-++|..++|+++- ..||. -|
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF---- 644 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF---- 644 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----
Confidence 5555554443 33456777777776666652 34455666677778777777641 12222 12
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHH
Q 038673 193 SACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAA 272 (548)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 272 (548)
....+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+..
T Consensus 645 elal~lgrl~iA~~la~e~--------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA--------NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh--------cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHH
Confidence 2234678888888776554 366778899999999999999999988754 366777788888887766
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 273 IQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 273 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
..+-....+.|. .|.-..+|...|+++++.+++.+-.
T Consensus 712 ~~la~~~~~~g~------------------------------~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 712 AVLASLAKKQGK------------------------------NNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHhhcc------------------------------cchHHHHHHHcCCHHHHHHHHHhcC
Confidence 666666665543 2222345666788888888887654
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.90 E-value=14 Score=35.24 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH--cC----ChHHHHHHHccCCC
Q 038673 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVK--CG----FLGCSRKVFDEMPE 116 (548)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~ 116 (548)
++....+++.+.+.| +..+.+++-+..-.... .. ....|..+|+.|++
T Consensus 78 ~~~~~~~y~~L~~~g-Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk 131 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG-FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKK 131 (297)
T ss_pred HHHHHHHHHHHHHhc-cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 456788899999998 88888777664444333 11 24456666666654
No 303
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.78 E-value=9 Score=33.37 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=50.3
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--hhhHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 038673 18 FLWTALIRGYILQGHLKDSISLYCSMRREGIGPV--SFTLSALFKACTEVLDVSLGQQIHAQTILL 81 (548)
Q Consensus 18 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~ 81 (548)
..|..+..-|.+.|+.+.|++.|.++.+....|. ...+-.+++.+...+++..+......+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3688888999999999999999999988755553 345677888888888988888877776554
No 304
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.31 E-value=33 Score=31.31 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCCC-------CChhhhHHHHHHHHhcCCHHHHHHH
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQ-------RNVFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l 275 (548)
..+.+.|-.|.-..++..|.+.++.-.+ .+..+...|+.+|- .|+.+++-++
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 3455555666666777777777776332 34556667777664 4555554443
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.46 E-value=47 Score=32.44 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=49.5
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC-------ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR-------NVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
....++..++..+-+.|.++.|...+..+.+. ++...-.-+...-..|+..+|+..+++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46678889999999999999999999888752 2334444556677789999999999888873
No 306
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.44 E-value=28 Score=29.90 Aligned_cols=121 Identities=14% Similarity=0.021 Sum_probs=84.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CC
Q 038673 263 FAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VE 341 (548)
Q Consensus 263 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~ 341 (548)
+++.+..++|+.-|.++.+.|...-.+ -.--.+.......|+-.+|...|.++. ..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~Ypv-----------------------LA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPV-----------------------LARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchH-----------------------HHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 467788999999999998865432111 011223455678899999999999985 33
Q ss_pred CChhHHHHHH-----HHHHhcCCHHHHHHHHHHHhh-cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 342 PNGGVWGALL-----GACQIHRNPEIAQIAANHLFE-LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 342 p~~~~~~~ll-----~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
|.+....-+- -.+..+|.++....-.+-+-. .+|-....-..|+-+-.+.|++.+|.+.|..+..
T Consensus 125 ~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 125 SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4444432222 235678888887776665544 5555556777888889999999999999998864
No 307
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=82.60 E-value=17 Score=34.60 Aligned_cols=123 Identities=14% Similarity=0.163 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc--cC----ChhHHHHHHHHHHHcCCCC-CChHhHHHHHHHHHhcCCCH
Q 038673 166 PREAIEYFERMQYAGVETDYVTLVGVISACAQ--LG----VIKYANWVCEIAEGSGFGP-INNVVVGSALIDMYSKCGSI 238 (548)
Q Consensus 166 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~p-~~~~~~~~~li~~y~~~g~~ 238 (548)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+..+-- ..+...+..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788889999988888877664444333 22 3567889999998865431 1233444444433 33443
Q ss_pred ----HHHHHHHhcCCC-----CChhhhHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHhh
Q 038673 239 ----DDAYRIFVGMKQ-----RNVFSYSSMILGFAMHGR---AHAAIQLFGDMVKTETKPNGVT 290 (548)
Q Consensus 239 ----~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t 290 (548)
+.++.+|+.+.+ .|..-+.+-|-++..... ...+.++++.+.+.|+++....
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 345555555543 344334443333332221 4578889999999877766544
No 308
>PRK09687 putative lyase; Provisional
Probab=82.34 E-value=46 Score=31.53 Aligned_cols=231 Identities=6% Similarity=-0.105 Sum_probs=139.4
Q ss_pred CChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCh----HHHHHHHccC--CCCCeehHH
Q 038673 50 PVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFL----GCSRKVFDEM--PERDVVSWT 123 (548)
Q Consensus 50 p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m--~~~~~~~~~ 123 (548)
+|.......+.++...|..+....+ ..+.+ .+|..+....+.+++..|+. +++...+..+ .+++...-.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l-~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLA-IELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHH-HHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHH
Confidence 5666666666677666653333322 22322 45667777777777777763 4566666655 346666666
Q ss_pred HHHHHHHhCCCh-----HHHHHHHcc-CCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 038673 124 ELIVAYANNGDM-----ESAGGLFNE-LPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQ 197 (548)
Q Consensus 124 ~li~~~~~~g~~-----~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 197 (548)
..+.++...+.. ..+.+.+.. +..++..+--..+.++.+.++ ++|+..+-.+.+. +|...-...+.++++
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNS 185 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhc
Confidence 666666555421 223333322 334566666667777777775 5677777777653 444444555556665
Q ss_pred cC-ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHH
Q 038673 198 LG-VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLF 276 (548)
Q Consensus 198 ~g-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 276 (548)
.+ .-..+...+-.+.. . .+..+....+.++++.|+......+.+.+..++ ..-..+.++...|.. +|+..+
T Consensus 186 ~~~~~~~~~~~L~~~L~---D--~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 186 NKYDNPDIREAFVAMLQ---D--KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred CCCCCHHHHHHHHHHhc---C--CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHH
Confidence 43 23455555555553 2 377788888999999998654444555554444 344677888999986 789988
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHh
Q 038673 277 GDMVKTETKPNGVTFIGVLTACS 299 (548)
Q Consensus 277 ~~m~~~g~~p~~~t~~~ll~a~~ 299 (548)
..+... .||...-...+.+|.
T Consensus 258 ~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 258 DTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHhh--CCChhHHHHHHHHHh
Confidence 888873 456666555555553
No 309
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.23 E-value=9 Score=29.49 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=35.6
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 337 KMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 337 ~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
.+-+-|++.+..+.|.+|++.+++..|.++++.+...-.+....|..++
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3346799999999999999999999999999999885554444666655
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.18 E-value=9.1 Score=29.13 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=38.4
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 337 KMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 337 ~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
.+-+-|++.+..+-+.||++.+++..|.++++-+...-.++...|..++
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3347799999999999999999999999999988864443444555554
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.23 E-value=2.1 Score=23.60 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHcCCchHHHHHHH
Q 038673 380 NYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
....++.++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56677888888888888887764
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.00 E-value=3.6 Score=23.94 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=19.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456667777888888888888888776
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.56 E-value=4.1 Score=25.05 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQY 178 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 178 (548)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777778888888888887777643
No 314
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.17 E-value=25 Score=27.06 Aligned_cols=85 Identities=13% Similarity=0.059 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 038673 201 IKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMV 280 (548)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 280 (548)
.++|..+-+.+...+-. ...+--.-+..+.+.|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|.
T Consensus 21 HqEA~tIAdwL~~~~~~---~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 21 HQEANTIADWLHLKGES---EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHhcCCch---HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 46666666666555422 33333334566778999999999999999999999988765 46677777777777777
Q ss_pred HcCCCCCHhhH
Q 038673 281 KTETKPNGVTF 291 (548)
Q Consensus 281 ~~g~~p~~~t~ 291 (548)
.+| .|...+|
T Consensus 96 ~sg-~p~lq~F 105 (115)
T TIGR02508 96 ASG-DPRLQTF 105 (115)
T ss_pred hCC-CHHHHHH
Confidence 764 3444444
No 315
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.57 E-value=60 Score=31.99 Aligned_cols=162 Identities=20% Similarity=0.201 Sum_probs=96.2
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCC------CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQ------RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
...+.-+.+.|..||+++.|.+.+.+.+. .-+..|-.+|..-.-.|+|........+.... |+. +..
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st---~~~--~~~-- 222 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST---PDA--NEN-- 222 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC---chh--hhh--
Confidence 45677788999999999999999999663 23345667777777788888888877777653 221 000
Q ss_pred HHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC---------CCCChhHHHHHHHHHHhcCCHHHH---
Q 038673 296 TACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP---------VEPNGGVWGALLGACQIHRNPEIA--- 363 (548)
Q Consensus 296 ~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~~~~~~ll~~~~~~~~~~~a--- 363 (548)
....+.+-...+..+.....+ .+..|.+.|-... +.|...+.-..+.+.+.-+.-+.-
T Consensus 223 --------~~q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~v 292 (466)
T KOG0686|consen 223 --------LAQEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNV 292 (466)
T ss_pred --------HHHhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHH
Confidence 112334455566666666655 6666666554442 345433333444444433332222
Q ss_pred --HHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 364 --QIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 364 --~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
...|+...++.|. ....+..-|. +++....+++++++
T Consensus 293 i~n~~Fk~flel~Pq---lr~il~~fy~--sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 293 IKNESFKLFLELEPQ---LREILFKFYS--SKYASCLELLREIK 331 (466)
T ss_pred HcchhhhhHHhcChH---HHHHHHHHhh--hhHHHHHHHHHHhc
Confidence 2456667777775 4444444443 35666666665553
No 316
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.48 E-value=5.3 Score=26.69 Aligned_cols=30 Identities=27% Similarity=0.191 Sum_probs=24.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 350 LLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 350 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
+--++.+.|+++.|.+..+.+++.+|+|..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 345788999999999999999999999873
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.90 E-value=4.7 Score=24.76 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888888765
No 318
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.53 E-value=15 Score=37.90 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
+..-|..|..+..+.|++..|.+.|.+... |.+|+-.+...|+-+....+-....+.|.. |..
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~--------N~A 727 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN--------NLA 727 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc--------chH
Confidence 344555555555555665555555544332 334444444455544444444444444432 112
Q ss_pred HHHHhcCCCHHHHHHHHhc
Q 038673 229 IDMYSKCGSIDDAYRIFVG 247 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~ 247 (548)
..+|...|+++++.+++.+
T Consensus 728 F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 728 FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 2334445555555555544
No 319
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.30 E-value=9 Score=36.02 Aligned_cols=52 Identities=17% Similarity=0.034 Sum_probs=42.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038673 165 KPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGF 216 (548)
Q Consensus 165 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 216 (548)
++++++.++..=.+-|+-||.+|++.++..+.+.+++..|.++.-.|.....
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 5678888888878888999999999999999999998888888877765543
No 320
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.95 E-value=54 Score=29.74 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=38.3
Q ss_pred HHHHHHcCCHHHHHHHHHhCC---CCCChhHHH---HHH--HHHHh-cCCHHHHHHHHHHHhhcCCCCc
Q 038673 319 VDLLGRAGCLEEALKMVEKMP---VEPNGGVWG---ALL--GACQI-HRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~---~ll--~~~~~-~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
.+.-+..+++.+|.++|++.. +..+..-|. .++ ..|.- ..+.-.+...+++..+++|.-.
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 344456788999999998874 222222232 233 22333 3677788888999999999743
No 321
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=77.69 E-value=93 Score=32.32 Aligned_cols=341 Identities=9% Similarity=0.034 Sum_probs=188.8
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhh-HHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFT-LSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
-..|+.+|.---+....+.+..++..++.. -|..+- |.....-=.+.|..+.+.++|++.++. ++.++..|....
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYL 120 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHH
Confidence 346888777655555667777778777753 455443 223333335678888999999998875 678888888777
Q ss_pred HHHH-HcCChHHHHHHHccCCC------CCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHH---C--
Q 038673 96 GMYV-KCGFLGCSRKVFDEMPE------RDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQ---N-- 163 (548)
Q Consensus 96 ~~~~-~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~---~-- 163 (548)
.... ..|+.+..++.|+.... .....|...|.--..++++.....+++++.+-....++.....|.+ .
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 6554 45677778888877654 3555677777777778888888888887765545555544444332 1
Q ss_pred ----CChhHHHHHHHHHHHC-C---CCCCHhhHHHHHHHHHc-cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 164 ----AKPREAIEYFERMQYA-G---VETDYVTLVGVISACAQ-LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 164 ----g~~~~A~~l~~~m~~~-g---~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
-..+++.++-...... . ..+.......-+.-... .+.++.+..+.... ...--.+|-+
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~-------------~~~~~~~~~~ 267 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI-------------VSIHEKVYQK 267 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHH-------------HHHHHHHHHh
Confidence 1122222222111110 0 00011111111110000 01111111111111 0111112222
Q ss_pred CCCHHHHHHHHhcCCC-----------CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC
Q 038673 235 CGSIDDAYRIFVGMKQ-----------RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL 303 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 303 (548)
.-...+....|+.-.+ .+..+|+.-+.--...|+.+.+.-+|++..-- |+
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~---------------cA---- 328 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP---------------CA---- 328 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH---------------Hh----
Confidence 2333344444444331 24568888888888889998888888876531 00
Q ss_pred ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 038673 304 KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALL-GACQIHRNPEIAQIAANHLFELEPDKIGN 380 (548)
Q Consensus 304 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 380 (548)
.=...|--.+.-....|+.+-|..++.... ..|+......+- .-+-..|+...|..+++.+.+--|.....
T Consensus 329 ------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 329 ------LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred ------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhh
Confidence 011234444454555588777777666542 223322222222 22445678999999999888855776655
Q ss_pred HHHHHHHHHHcCCchHHHH
Q 038673 381 YIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 381 ~~~l~~~~~~~g~~~~a~~ 399 (548)
-..-++...+.|+.+.+..
T Consensus 403 ~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 403 VLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHhHHHHhcchhhhhH
Confidence 5566677778888888773
No 322
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.41 E-value=43 Score=29.56 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=64.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V 340 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 340 (548)
-+..+|++++|..-|.+.+.. ++|...-..++ .|..-..++.+.+.++.|+.--.+.- +
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsI-------------------ly~Nraaa~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSI-------------------LYSNRAAALIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHH-------------------HHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence 456789999999999998874 33332222222 25455567778888888876655542 4
Q ss_pred CCChhHHHHHH---HHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 341 EPNGGVWGALL---GACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 341 ~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
.|+ .-.+|. .+|.+...++.|..-++++++.+|...
T Consensus 164 ~pt--y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 164 NPT--YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred Cch--hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 443 223333 467788889999999999999999754
No 323
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.32 E-value=15 Score=30.07 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHHhh-cCCCCc-hhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEccCCeEEEEEeCCCC
Q 038673 357 HRNPEIAQIAANHLFE-LEPDKI-GNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLT 434 (548)
Q Consensus 357 ~~~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~ 434 (548)
..++.+++.+++.+.+ -.|... .....|+-++.+.|+++.+.++.+.+.+..
T Consensus 48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e-------------------------- 101 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE-------------------------- 101 (149)
T ss_pred hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC--------------------------
Confidence 3456778888888886 455432 344466778889999999999988775422
Q ss_pred CCChHHHHHHHHHHHHHHHHCCccc
Q 038673 435 HPNSTEIQQALGDLLDRLQADGYQP 459 (548)
Q Consensus 435 ~~~~~~~~~~l~~l~~~m~~~g~~p 459 (548)
|+..++...=..+.+.|+++|++-
T Consensus 102 -~~n~Qa~~Lk~~ied~itkegliG 125 (149)
T KOG3364|consen 102 -PNNRQALELKETIEDKITKEGLIG 125 (149)
T ss_pred -CCcHHHHHHHHHHHHHHhhcceee
Confidence 222344444455677888887753
No 324
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.14 E-value=5.7 Score=37.29 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=52.7
Q ss_pred hccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC---CCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCC
Q 038673 9 FEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREG---IGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFT 85 (548)
Q Consensus 9 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 85 (548)
|..-....+.+-..++..-.+..+++.++..+-+++.+- ..|+. +-..+++.|.+ -+.+++..+...-++.| +-
T Consensus 56 F~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYG-iF 132 (418)
T KOG4570|consen 56 FERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYG-IF 132 (418)
T ss_pred hhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhc-cc
Confidence 433444444445555555555556666666655555421 11211 11122222222 23445555555556666 66
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHccCC
Q 038673 86 SDLYVGNTMIGMYVKCGFLGCSRKVFDEMP 115 (548)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 115 (548)
||.++++.||+.+.+.+++.+|.++.-.|.
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 666666666666666666666665555443
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.83 E-value=5 Score=23.10 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=11.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 353 ACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 353 ~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
++...|+.+.|...++++++..|+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHccCHHHHHHHHHHHHHHCcC
Confidence 334444445555555544444443
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.13 E-value=23 Score=31.22 Aligned_cols=75 Identities=13% Similarity=-0.009 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CChHhHHHHHHHHHhcCCCHHHHH
Q 038673 167 REAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGP-INNVVVGSALIDMYSKCGSIDDAY 242 (548)
Q Consensus 167 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~~~li~~y~~~g~~~~A~ 242 (548)
++|...|-++...+.--+......+...|. ..+.+++.+++-.+.+..-.- ..++.++.+|+..|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 457777777766664444444444444444 556777777776665432111 146777777777777777777664
No 327
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=76.04 E-value=6.2 Score=37.45 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=13.4
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCc
Q 038673 356 IHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 356 ~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
..|+.++|.+-++.+++++|++.
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccH
Confidence 34555666666666666666643
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.95 E-value=22 Score=31.38 Aligned_cols=68 Identities=10% Similarity=-0.082 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCC-------CCCeehHHHHHHHHHhCCChHHH
Q 038673 69 SLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP-------ERDVVSWTELIVAYANNGDMESA 138 (548)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A 138 (548)
+.|.+.|-.+...+ .-.++....+|...|.+ .+.+++..++-... +.|+..+.+|++.|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~-~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTP-ELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444444 33444445555554442 34444444444332 13445555555555555555554
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.90 E-value=5.6 Score=21.83 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 038673 315 YACMVDLLGRAGCLEEALKMVE 336 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~ 336 (548)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456677788888888887765
No 330
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=75.21 E-value=23 Score=26.46 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHH
Q 038673 204 ANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 204 a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 274 (548)
+.+++..+.+.|+- +......+-.+-...|+.+.|.++++.+. +.+..|..+++++-..|+..-|.+
T Consensus 21 ~~~v~d~ll~~~il---T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL---TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC---CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence 34556666666654 44444444333345677888888888888 777788888888888877665543
No 331
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.03 E-value=1.3e+02 Score=32.52 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCC-CCChhHHHHH-HHHHHhcCCHHHHHHHHHHH
Q 038673 317 CMVDLLGRAGCLEEALKMVEKMPV-EPNGGVWGAL-LGACQIHRNPEIAQIAANHL 370 (548)
Q Consensus 317 ~li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~ 370 (548)
.-+..-.+.++++.+...+..|+. ..+..-|.-- ..+....|+.+.|...|+.+
T Consensus 317 ~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 317 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444456666666666666641 1122222222 24444456666666666665
No 332
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.93 E-value=73 Score=29.75 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=47.4
Q ss_pred HHHCCChhHHHHH----HHHHHHCCCCCCHhhHHHHHHHHHccCCh-----hHHHHHHHHHHHcCCCCCChHhHHHHHHH
Q 038673 160 YVQNAKPREAIEY----FERMQYAGVETDYVTLVGVISACAQLGVI-----KYANWVCEIAEGSGFGPINNVVVGSALID 230 (548)
Q Consensus 160 ~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~p~~~~~~~~~li~ 230 (548)
+.+.|+...|-++ ++-..+.++++|......++......+.- .-..+..+.. +.+-.|..++.....+..
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHH
Confidence 3444554443333 23333445566665555555544433221 1122222233 344444468889999999
Q ss_pred HHhcCCCHHHHHHHHhcCCCCChhhh
Q 038673 231 MYSKCGSIDDAYRIFVGMKQRNVFSY 256 (548)
Q Consensus 231 ~y~~~g~~~~A~~~~~~~~~~~~~~~ 256 (548)
.|.+.|++.+|+..|-.-..++...+
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~~~~~~~~ 124 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGTDPSAFAY 124 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred HHHhhccHHHHHHHHHhcCChhHHHH
Confidence 99999999999988766544444433
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.94 E-value=6.8 Score=22.81 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 380 NYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
+|..++..|...|++++|.+.+++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 688899999999999999999998764
No 334
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.89 E-value=7.2 Score=21.46 Aligned_cols=21 Identities=19% Similarity=-0.029 Sum_probs=8.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhc
Q 038673 353 ACQIHRNPEIAQIAANHLFEL 373 (548)
Q Consensus 353 ~~~~~~~~~~a~~~~~~~~~~ 373 (548)
.+...++.+.|...++..++.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 10 AYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHhhHHHHHHHHHHHHcc
Confidence 333344444444444444333
No 335
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=73.62 E-value=98 Score=30.57 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-------
Q 038673 267 GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP------- 339 (548)
Q Consensus 267 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~------- 339 (548)
..+.++...|...+..+ |......+|.. .+-.+.++-.+...+.+.|+.+.|.+++++.-
T Consensus 8 ~~Y~~~q~~F~~~v~~~---Dp~~l~~ll~~----------~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~ 74 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSH---DPNALINLLQK----------NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAF 74 (360)
T ss_pred HHHHHHHHHHHHHHHcc---CHHHHHHHHHH----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34566677777766643 44444445532 23356777788888999999999988877640
Q ss_pred ---C-----------------CC-ChhHHHHHH---HHHHhcCCHHHHHHHHHHHhhcCCC-CchhHHHHHHHHH-HcCC
Q 038673 340 ---V-----------------EP-NGGVWGALL---GACQIHRNPEIAQIAANHLFELEPD-KIGNYIILSNIYA-SAGM 393 (548)
Q Consensus 340 ---~-----------------~p-~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~ 393 (548)
+ .+ |...|.++. ..+.+.|-+..|.+..+-++.++|. ||-.....++.|+ ++++
T Consensus 75 ~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 75 HPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred HHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 2 11 333455544 5678999999999999999999999 8877778888875 6678
Q ss_pred chHHHHHHHHHHh
Q 038673 394 WDDVSRVRRLLKM 406 (548)
Q Consensus 394 ~~~a~~~~~~m~~ 406 (548)
++-..++.+....
T Consensus 155 y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 155 YQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHhHhh
Confidence 8888888877654
No 336
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=73.56 E-value=1.1e+02 Score=31.16 Aligned_cols=226 Identities=10% Similarity=-0.041 Sum_probs=104.9
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccC------ChhHHHHHHHHHHHc-CCCCCChHhHHHHHHHHHhcCCCHH-HH
Q 038673 170 IEYFERMQYAGVETDYVTLVGVISACAQLG------VIKYANWVCEIAEGS-GFGPINNVVVGSALIDMYSKCGSID-DA 241 (548)
Q Consensus 170 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g------~~~~a~~~~~~~~~~-~~~p~~~~~~~~~li~~y~~~g~~~-~A 241 (548)
..+|++..+. .|+...+...|..|...- .+..-..+++...+. +..| .....|..+.-++.....-. .|
T Consensus 302 ~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~-~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 302 CAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSE-CLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHhccchHhHHH
Confidence 3455554432 344445555566654332 233444555544433 3333 56667777777777766543 34
Q ss_pred HHHHhcCCCCChhhhHHHHHHHHhc-CCHH-HHHHHHHHHHH--------------cCCCCCHhhHHHHHHHHhhcCCcc
Q 038673 242 YRIFVGMKQRNVFSYSSMILGFAMH-GRAH-AAIQLFGDMVK--------------TETKPNGVTFIGVLTACSHVGLKC 305 (548)
Q Consensus 242 ~~~~~~~~~~~~~~~~~li~~~~~~-g~~~-~A~~l~~~m~~--------------~g~~p~~~t~~~ll~a~~~~~~~~ 305 (548)
..+..+..+.+...|-.-++..... .+.. .-.++|..... .|-.|...+...++++....+
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~--- 455 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVI--- 455 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc---
Confidence 4444455556666665544443322 1111 11122222222 122334444444444433322
Q ss_pred CCCCcCHHHH-HHHHHHHHHcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHH--HhcCCHHHHHHHHHHHhhcCCCCchh
Q 038673 306 YGVSPSTDHY-ACMVDLLGRAGCLEEALKMVEKMP-V-EPNGGVWGALLGAC--QIHRNPEIAQIAANHLFELEPDKIGN 380 (548)
Q Consensus 306 ~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~p~~~~~ 380 (548)
.|+..++ +.+++-+-+.|-..+|...+..+. . .|+...|..++..- ...-+..-+...++.+..-...++..
T Consensus 456 ---~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 ---GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred ---CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence 2222222 345555556666666666666553 1 23455555555321 11122555556666655533344445
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHH
Q 038673 381 YIILSNIYASAGMWDDVSRVRRLL 404 (548)
Q Consensus 381 ~~~l~~~~~~~g~~~~a~~~~~~m 404 (548)
|......-...|+.+.+-.++.+.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHH
Confidence 554444444555555555554433
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.32 E-value=4.3 Score=23.39 Aligned_cols=28 Identities=18% Similarity=0.174 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 380 NYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
++..++.+|.+.|++++|.++++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998753
No 338
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=73.10 E-value=1.2e+02 Score=31.49 Aligned_cols=343 Identities=12% Similarity=0.033 Sum_probs=199.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHh-hccCCcHHHHHHHHHHHHhCCCC-CChhHHHHHHHH
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKAC-TEVLDVSLGQQIHAQTILLGGFT-SDLYVGNTMIGM 97 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~-~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~ 97 (548)
|-....-=.+.|..+.+.++|++-.. |++-....|...+..+ ...|+.+..+..|+.+...-|.. .+...|...|..
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 44444444567889999999999886 5665666666666554 35678888899999888764332 234567777777
Q ss_pred HHHcCChHHHHHHHccCCCCCeehHHHHHHHHH---hC------CChHHHHHH-----------------------HccC
Q 038673 98 YVKCGFLGCSRKVFDEMPERDVVSWTELIVAYA---NN------GDMESAGGL-----------------------FNEL 145 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~---~~------g~~~~A~~~-----------------------f~~m 145 (548)
-..+++......+++++.+-....++..-.-|. +. ...+++.++ .+..
T Consensus 161 en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~ 240 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDS 240 (577)
T ss_pred HhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhc
Confidence 777888888888888887622222222111111 11 111222111 1111
Q ss_pred CCC-C--hhHHHHH-------HHHHHHCCChhHHHHHHHHHHHC---CCCC----CHhhHHHHHHHHHccCChhHHHHHH
Q 038673 146 PLK-D--KVAWTAM-------VTGYVQNAKPREAIEYFERMQYA---GVET----DYVTLVGVISACAQLGVIKYANWVC 208 (548)
Q Consensus 146 ~~~-~--~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~---g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~ 208 (548)
..+ + ...-+.+ -..|...-...+....|+.-.+. .++| +..+|..-+.--...|+.+...-++
T Consensus 241 ~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ 320 (577)
T KOG1258|consen 241 TDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILF 320 (577)
T ss_pred cCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHH
Confidence 111 0 0011111 11122222222222333322221 1223 3456777777778889999888888
Q ss_pred HHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---C---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 209 EIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---R---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 209 ~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
+...-.-- .-...|-..+.-....|+.+-|..++....+ + .+....+.+. -..|+.+.|..+++...+.
T Consensus 321 ercli~cA---~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 321 ERCLIPCA---LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE--ESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHHhHHh---hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhh
Confidence 87653211 1334455555555555888888888776553 2 3333333332 3458999999999999886
Q ss_pred CCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHH---HHHHhCC-CCCChhHHHHHH-----HH
Q 038673 283 ETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL---KMVEKMP-VEPNGGVWGALL-----GA 353 (548)
Q Consensus 283 g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~---~~~~~m~-~~p~~~~~~~ll-----~~ 353 (548)
. |+..- .-.--+...-+.|..+.+. +++.... .+-+..+...+. --
T Consensus 396 -~-pg~v~-----------------------~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 396 -Y-PGLVE-----------------------VVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred -C-Cchhh-----------------------hHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 3 55332 1112234556778888777 4544442 233333333333 22
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 038673 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGM 393 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 393 (548)
+...++.+.|..++..+.+..|++...|..+++.....+.
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 4567889999999999999999999899999988877664
No 339
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.72 E-value=43 Score=26.13 Aligned_cols=79 Identities=14% Similarity=0.049 Sum_probs=53.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHH
Q 038673 199 GVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGD 278 (548)
Q Consensus 199 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 278 (548)
...++|..+.+.+...+-. ...+--.-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.+
T Consensus 20 HcH~EA~tIa~wL~~~~~~---~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM---EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT---HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 3567888888888777643 55555556677788899999965555666788888877654 567888888888877
Q ss_pred HHHc
Q 038673 279 MVKT 282 (548)
Q Consensus 279 m~~~ 282 (548)
+..+
T Consensus 95 la~~ 98 (116)
T PF09477_consen 95 LASS 98 (116)
T ss_dssp HCT-
T ss_pred HHhC
Confidence 7654
No 340
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.03 E-value=64 Score=30.36 Aligned_cols=123 Identities=13% Similarity=0.111 Sum_probs=87.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHH-CCCCCChhhHHHHHHHhhc-cC-CcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRR-EGIGPVSFTLSALFKACTE-VL-DVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~a~~~-~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
|..|+. ++....+|+.+|+.... ..+--|..+...+++.... .+ ....--++.+.+...-+-.++..+....+.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 666654 34556788888874332 2345577788888887765 22 233344555555554224677888888999
Q ss_pred HHHHcCChHHHHHHHccCCC-----CCeehHHHHHHHHHhCCChHHHHHHHccC
Q 038673 97 MYVKCGFLGCSRKVFDEMPE-----RDVVSWTELIVAYANNGDMESAGGLFNEL 145 (548)
Q Consensus 97 ~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~m 145 (548)
.+++.+++..-.++++.... .|...|..+|......|+..-...+.++-
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 99999999999998886543 58889999999999999999888887653
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.87 E-value=70 Score=28.16 Aligned_cols=130 Identities=13% Similarity=0.078 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHH--HHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVG--VISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
.|..++.... .+.. +......++....-....-++.+ +...+...++++.|..-++......-+-.....+-..|.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 4445554433 3333 55555566665431211222222 334467788999999988877654322101223344567
Q ss_pred HHHhcCCCHHHHHHHHhcCCCCChhhh--HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQRNVFSY--SSMILGFAMHGRAHAAIQLFGDMVKTE 283 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g 283 (548)
......|.+++|.+.++....++-... ..--..+...|+-++|..-|++.+..+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 778889999999999998877643332 222346888999999999999998865
No 342
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.84 E-value=70 Score=28.16 Aligned_cols=92 Identities=11% Similarity=0.114 Sum_probs=66.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 260 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
...+...|++++|+.-++..... |....+..++. -.|.......|.+|+|+.+++...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~-------------------lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA-------------------LRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH-------------------HHHHHHHHHhhhHHHHHHHHhccc
Confidence 34577889999999998887652 44444444432 245677788999999999998765
Q ss_pred CCCChhHHHHHH-----HHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038673 340 VEPNGGVWGALL-----GACQIHRNPEIAQIAANHLFELEPDK 377 (548)
Q Consensus 340 ~~p~~~~~~~ll-----~~~~~~~~~~~a~~~~~~~~~~~p~~ 377 (548)
.+ .|.+++ ..+...|+.++|...|++.++..++.
T Consensus 154 -~~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 154 -EE---SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred -cc---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 23 333332 67889999999999999999876543
No 343
>PRK10941 hypothetical protein; Provisional
Probab=71.44 E-value=21 Score=33.45 Aligned_cols=60 Identities=17% Similarity=0.067 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 347 WGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 347 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.+.+-.++.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++...+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 345557889999999999999999999999998888888899999999999987776654
No 344
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.12 E-value=81 Score=29.24 Aligned_cols=128 Identities=11% Similarity=0.112 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHH---CCC--CCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc-----CCCCCCh
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQY---AGV--ETDYVTLVGVISACAQLGVIKYANWVCEIAEGS-----GFGPINN 221 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~ 221 (548)
+.-.+|..+.+.|++++.+..|.+|.. +.+ .-+..+.++++.--+...+.+.-..+++.-.+. +-. .-
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeR--LW 144 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNER--LW 144 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcce--ee
Confidence 445567777778888887777777643 111 123445677776666666666655555543321 101 12
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCC--------CC-------hhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQ--------RN-------VFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
..+-+-|...|...|.+.+..+++.++.+ .| ...|..=|..|..+.+-..-..++++.+.
T Consensus 145 FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 145 FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 23445677788888888888887776642 11 24677777888888887777778887654
No 345
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.55 E-value=55 Score=27.32 Aligned_cols=77 Identities=8% Similarity=0.116 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhcCC---------CCChhhhHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHhhHHHH
Q 038673 225 GSALIDMYSKCGSIDDAYRIFVGMK---------QRNVFSYSSMILGFAMHGR-AHAAIQLFGDMVKTETKPNGVTFIGV 294 (548)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l 294 (548)
.|.++.-...-++......+++.+. ..+..+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444444444444444432 1355678888888865555 34567789999888788888888888
Q ss_pred HHHHhhc
Q 038673 295 LTACSHV 301 (548)
Q Consensus 295 l~a~~~~ 301 (548)
+++|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8877653
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=69.30 E-value=15 Score=34.94 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=42.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHhhcCC---ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038673 261 LGFAMHGRAHAAIQLFGDMVKTETKP-NGVTFIGVLTACSHVGL---KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVE 336 (548)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~---~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 336 (548)
.-|.++|.+++|++.|..-+. +.| |.+++..-..||.+... .+..+..-...-...+.+|.|.+.-.+++..+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 457889999999999988776 566 77777665556554432 111111111112234566666555444444443
Q ss_pred h
Q 038673 337 K 337 (548)
Q Consensus 337 ~ 337 (548)
+
T Consensus 183 E 183 (536)
T KOG4648|consen 183 E 183 (536)
T ss_pred H
Confidence 3
No 347
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.71 E-value=32 Score=22.97 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCc
Q 038673 381 YIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGY 457 (548)
Q Consensus 381 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 457 (548)
...++-++.+.|++++|.+..+.+.+. .|...++......+.++|+++|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~---------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI---------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH---------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh---------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778899999999999999988652 13345565556667777877774
No 348
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.08 E-value=56 Score=25.54 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=20.8
Q ss_pred HHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC
Q 038673 129 YANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180 (548)
Q Consensus 129 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 180 (548)
+.+.|++++|+..=.....||...|-+|-. .+.|-.+++...+.++..+|
T Consensus 50 LmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 50 LMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 334444444433333334445555544432 34555555555555554444
No 349
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=67.82 E-value=93 Score=27.97 Aligned_cols=164 Identities=15% Similarity=0.040 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
+..||-+.--+...|+++.|.+.|+...+....-+-...+.-| ++--.|++..|.+=+-..-+..... +-...|--+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~D-PfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPND-PFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCC-hHHHHHHHHH
Confidence 4577777777778888888888887776543111111111111 2233466777666555544443321 1223333222
Q ss_pred HHHhcCCCHHHHHH-HHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCC
Q 038673 230 DMYSKCGSIDDAYR-IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGV 308 (548)
Q Consensus 230 ~~y~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 308 (548)
. ..-++.+|.. +.++....|..-|..-|-.|.- |+.. ...+++++..- .-|...+.-.+
T Consensus 177 E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~--a~~n~~~Ae~L------------- 236 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD--ATDNTSLAEHL------------- 236 (297)
T ss_pred H---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh--ccchHHHHHHH-------------
Confidence 2 2223444443 4445555565666665555442 3321 23345555442 22444444444
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 309 SPSTDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
.++|--|...+...|+.++|..+|+-.
T Consensus 237 ---TEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 237 ---TETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred ---HHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 357888899999999999999998754
No 350
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.70 E-value=22 Score=32.18 Aligned_cols=81 Identities=10% Similarity=0.107 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHhC-CCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 326 GCLEEALKMVEKM-PVEPNG-GVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 326 g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
.+++.|..-|.+. .+.|+. .-|+.=+-++.+..+++.+..-..+.+++.|+.......|.........+++|+..+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4556666655444 367886 44555666777889999999999999999999999999999999999999999999988
Q ss_pred HHh
Q 038673 404 LKM 406 (548)
Q Consensus 404 m~~ 406 (548)
...
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 743
No 351
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=67.27 E-value=14 Score=34.59 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=26.5
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 038673 355 QIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 401 (548)
.+.|+.|+|..+|+.++.+.|.++....-++.......++-+|.+++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 34566666666666666666666655555555444444444554444
No 352
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.06 E-value=1.6e+02 Score=30.27 Aligned_cols=172 Identities=15% Similarity=0.118 Sum_probs=110.9
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
|-...-+++..+.++..+.-+..+-.+|..-| .+...|..++..|... .-++-..+++++++..+. ++.....|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn---Dvv~~ReL 138 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN---DVVIGREL 138 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch---hHHHHHHH
Confidence 34456677888888888888888888888764 4667788888888877 557778888888888887 88888888
Q ss_pred HHHHhcCCCHHHHHHHHhcCCCC------Ch---hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQR------NV---FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS 299 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 299 (548)
++.|.+ ++.+.+...|.++..+ +. ..|.-++.. -..+.+..+.+..+....
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~----------------- 198 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTK----------------- 198 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHh-----------------
Confidence 888887 7888888887765421 11 134444321 123344444444444332
Q ss_pred hcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHH
Q 038673 300 HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLG 352 (548)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~ 352 (548)
.|...-...+.-+-.-|....++.+|++++..+. .+.|...-..++.
T Consensus 199 ------lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 199 ------LGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred ------hccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 1222233445556677888899999999998663 2233433344443
No 353
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.95 E-value=22 Score=31.74 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKM-PVEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
+.+.-+..+.+.+++.+|+...++- +-+|. ...-..++..++..|++++|..-++.+-++.|+..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3455667888899999999887644 45665 55556677999999999999999999999998754
No 354
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.33 E-value=89 Score=27.17 Aligned_cols=91 Identities=18% Similarity=0.115 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-hhHHHHHHHHHHhcC-----------CHHHHHHHHHHHhhcC
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKM--------PVEPN-GGVWGALLGACQIHR-----------NPEIAQIAANHLFELE 374 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~ 374 (548)
|...+.-+.......++.+++++. .+.|+ ..++..+-.++..++ .+++|...|+++.+.+
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~ 110 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED 110 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC
Confidence 333344444444444554454433 26787 455555555554332 2566777777788899
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 038673 375 PDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKN 412 (548)
Q Consensus 375 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 412 (548)
|++. .|..-+.+.. +|-+++.++.+.+....
T Consensus 111 P~ne-~Y~ksLe~~~------kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 111 PNNE-LYRKSLEMAA------KAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp TT-H-HHHHHHHHHH------THHHHHHHHHHSSS---
T ss_pred CCcH-HHHHHHHHHH------hhHHHHHHHHHHHhhhh
Confidence 9987 6666555553 58888888888776543
No 355
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.25 E-value=8.1 Score=31.39 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=24.7
Q ss_pred CCCchHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 038673 30 QGHLKDSISLYCSMRREGIGPVSFTLSALFKAC 62 (548)
Q Consensus 30 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 62 (548)
.|.-..|-.+|.+|+..|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 46667789999999999988875 77777665
No 356
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.17 E-value=62 Score=34.54 Aligned_cols=182 Identities=19% Similarity=0.203 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----------hhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCC
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDY----------VTLVGVISACAQLGVIKYANWVCEIAEGS-GFGP 218 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p 218 (548)
..+-..++..|....+++..+++.+.+++. ||. +.|...++---+-|+-++|..+.-.+++. |..
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v- 276 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV- 276 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC-
Confidence 345666777888888888888888888763 322 12333333333446666666665555443 221
Q ss_pred CChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh---hHHHHH
Q 038673 219 INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGV---TFIGVL 295 (548)
Q Consensus 219 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll 295 (548)
.+ ++||-||++ +..|- +-+.|...+..+.|.+.|++.-+ +.|+.. .+..||
T Consensus 277 --ap-------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL 330 (1226)
T KOG4279|consen 277 --AP-------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLL 330 (1226)
T ss_pred --CC-------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHH
Confidence 11 355556543 22221 11234445556677778877766 566653 344444
Q ss_pred HHHhhcCCccCCCCcCHH---HHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038673 296 TACSHVGLKCYGVSPSTD---HYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 296 ~a~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 372 (548)
.+-.+. ++-+.+ .-..|-.++++.|.++.-.++++- ...+.+-.-.+++.+|.++.+.|.+
T Consensus 331 ~aaG~~------Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfK 394 (1226)
T KOG4279|consen 331 RAAGEH------FENSLELQQIGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFK 394 (1226)
T ss_pred HHhhhh------ccchHHHHHHHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhc
Confidence 443221 111111 112344566788888777666642 2334555667889999999999999
Q ss_pred cCCCC
Q 038673 373 LEPDK 377 (548)
Q Consensus 373 ~~p~~ 377 (548)
+.|+.
T Consensus 395 Lk~P~ 399 (1226)
T KOG4279|consen 395 LKPPV 399 (1226)
T ss_pred cCCce
Confidence 88874
No 357
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.83 E-value=88 Score=31.56 Aligned_cols=93 Identities=9% Similarity=0.074 Sum_probs=68.9
Q ss_pred HHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 038673 321 LLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVS 398 (548)
Q Consensus 321 ~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 398 (548)
.....|.++.+.+.+.... +.....+...++......|+.+.|....+.++..+-.++......+..--..|-++++.
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 3456789999998888774 44567788888888889999999999999998866666655555555555667888999
Q ss_pred HHHHHHHhCCCccCC
Q 038673 399 RVRRLLKMTGLKKNP 413 (548)
Q Consensus 399 ~~~~~m~~~g~~~~~ 413 (548)
-.+++...-..+.+.
T Consensus 412 ~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 412 HYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHhccCChhcc
Confidence 888888654443333
No 358
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=62.95 E-value=2.7e+02 Score=31.58 Aligned_cols=157 Identities=12% Similarity=0.055 Sum_probs=65.2
Q ss_pred CCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhH-HHHHHHHHHHCCCCCCHhhHHHHH
Q 038673 114 MPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPRE-AIEYFERMQYAGVETDYVTLVGVI 192 (548)
Q Consensus 114 m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~t~~~ll 192 (548)
+..+|...-...+.++.+.+..+. +......++...-...+.++...+..+. +...+..+.+ .+|...-...+
T Consensus 723 L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~ 796 (897)
T PRK13800 723 LGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAAL 796 (897)
T ss_pred hcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHH
Confidence 334444444444444444433222 1222233444444444444444443322 2333333332 23444444555
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHH
Q 038673 193 SACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAA 272 (548)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 272 (548)
.++...|..+.+...+..+.+. .+..+-...+.++.+.+..+....+...+..++...--..+.++...+....+
T Consensus 797 ~aLg~~g~~~~~~~~l~~aL~d-----~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a 871 (897)
T PRK13800 797 AALAELGCPPDDVAAATAALRA-----SAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAA 871 (897)
T ss_pred HHHHhcCCcchhHHHHHHHhcC-----CChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHH
Confidence 5555555443332222222221 14444555555555555433333333333345554444455555544222344
Q ss_pred HHHHHHHHH
Q 038673 273 IQLFGDMVK 281 (548)
Q Consensus 273 ~~l~~~m~~ 281 (548)
...+....+
T Consensus 872 ~~~L~~al~ 880 (897)
T PRK13800 872 RDALTTALT 880 (897)
T ss_pred HHHHHHHHh
Confidence 444444443
No 359
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.74 E-value=59 Score=26.42 Aligned_cols=72 Identities=7% Similarity=0.064 Sum_probs=46.7
Q ss_pred HHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 329 EEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE--LEPDKIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 329 ~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
+++.+.|..-+ .+-|..-...-+. |+.. .+.+..+|+.|.. +.-..+..|...+..+...|++++|.++++.
T Consensus 50 er~~~~f~~~~~Y~nD~RylkiWi~-ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 50 ERCIRKFKDDERYKNDERYLKIWIK-YADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHTTSGGGTT-HHHHHHHHH-HHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhhhHhhcCCHHHHHHHHH-HHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44445554443 3444443333332 2222 2288889998887 5566778999999999999999999999875
No 360
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.63 E-value=1.3e+02 Score=30.25 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=9.0
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 038673 349 ALLGACQIHRNPEIAQIAAN 368 (548)
Q Consensus 349 ~ll~~~~~~~~~~~a~~~~~ 368 (548)
+++......|+.+.+..+++
T Consensus 204 t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 204 AALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 33433344555554444433
No 361
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.53 E-value=45 Score=26.26 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
|..|+..|...|..++|++++.+..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 8889999999999999999988775
No 362
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.22 E-value=2.3e+02 Score=30.64 Aligned_cols=52 Identities=0% Similarity=-0.189 Sum_probs=26.9
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCC---hhhHHHHHHHhhccCCcHHHHHHHHHH
Q 038673 25 RGYILQGHLKDSISLYCSMRREGIGPV---SFTLSALFKACTEVLDVSLGQQIHAQT 78 (548)
Q Consensus 25 ~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~~~~~~a~~~~~~~ 78 (548)
.-+.+.+.+++|++.-+.-.. ..|. .......+..+...|++++|-...-.|
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m 418 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKM 418 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHH
Confidence 345566677777766554432 2331 223444455555556665555544444
No 363
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.14 E-value=2.1e+02 Score=31.85 Aligned_cols=27 Identities=7% Similarity=0.257 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQY 178 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 178 (548)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488889999999999999999998876
No 364
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=62.11 E-value=1.2e+02 Score=28.57 Aligned_cols=112 Identities=6% Similarity=0.069 Sum_probs=66.3
Q ss_pred CChhHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHc-cC-ChhHHHHHHHHHHHc-CCCCCChHhHHHHHHHHHhcCCCHH
Q 038673 164 AKPREAIEYFERMQY-AGVETDYVTLVGVISACAQ-LG-VIKYANWVCEIAEGS-GFGPINNVVVGSALIDMYSKCGSID 239 (548)
Q Consensus 164 g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~-~g-~~~~a~~~~~~~~~~-~~~p~~~~~~~~~li~~y~~~g~~~ 239 (548)
....+|+++|+.... ..+--|......++..... .+ ...--.++.+.+... +-. .+..+....+..+++.+++.
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~--l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKS--LTRNVIISILEILAESRDWN 219 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccC--CChhHHHHHHHHHHhcccHH
Confidence 334566666663322 2345566666666665544 11 223333444444432 222 36667777888888888888
Q ss_pred HHHHHHhcCC-----CCChhhhHHHHHHHHhcCCHHHHHHHHH
Q 038673 240 DAYRIFVGMK-----QRNVFSYSSMILGFAMHGRAHAAIQLFG 277 (548)
Q Consensus 240 ~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~ 277 (548)
.-.++++... ..|...|..+|..-...|+..-..++..
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 8888877654 3477788888888888888655444443
No 365
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.49 E-value=18 Score=20.44 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 358 RNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 358 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788888888888888877766665554
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.48 E-value=68 Score=28.80 Aligned_cols=74 Identities=14% Similarity=-0.022 Sum_probs=50.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC------CChhhhHHHH
Q 038673 187 TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ------RNVFSYSSMI 260 (548)
Q Consensus 187 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li 260 (548)
|....++.+.+.+.+.++......-++..+. +......|++.|+-.|++++|..-++-.-+ +....|..+|
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt---da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT---DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc---cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 3444556666777777887777777776644 777777788888888888888776665432 2345677777
Q ss_pred HHH
Q 038673 261 LGF 263 (548)
Q Consensus 261 ~~~ 263 (548)
.+-
T Consensus 80 r~e 82 (273)
T COG4455 80 RCE 82 (273)
T ss_pred HHH
Confidence 653
No 367
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=60.89 E-value=33 Score=29.69 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhcC-------CHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 038673 345 GVWGALLGACQIHR-------NPEIAQIAANHLFELEPDKIGNYIILSNIYASAGM 393 (548)
Q Consensus 345 ~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 393 (548)
.-|...|.-+.+.. .+++|..-|++++.++|+...++..++++|...|.
T Consensus 29 ~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 29 TNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 34555554443333 35667777788888999999999999999987764
No 368
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.86 E-value=47 Score=26.80 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=16.8
Q ss_pred CCCCCChhhHHHHHHHhhccCCcHHHHHHHHHH
Q 038673 46 EGIGPVSFTLSALFKACTEVLDVSLGQQIHAQT 78 (548)
Q Consensus 46 ~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 78 (548)
..+.|++......++||.+.+|+..|.++++-+
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344455555555555555555555555555444
No 369
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.56 E-value=24 Score=26.71 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 365 IAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 365 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
..++...+.+|++...-..++..+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4455666788999889999999999999999999888777644
No 370
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.48 E-value=2.6e+02 Score=30.30 Aligned_cols=166 Identities=12% Similarity=0.162 Sum_probs=97.3
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCC---ChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHH
Q 038673 63 TEVLDVSLGQQIHAQTILLGGFTS---DLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAG 139 (548)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 139 (548)
.+.+.+++|...-+.. ++..| -..++..+|+.+...|++++|-...-.|...+..-|--.+..+...++.....
T Consensus 367 l~~k~yeeAl~~~k~~---~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKAS---IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHhhHHHHHHHHHHhc---cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 3344455555443322 12344 34577888888888999999999988888888888888888888777765543
Q ss_pred HHHccCCC-CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038673 140 GLFNELPL-KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGP 218 (548)
Q Consensus 140 ~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 218 (548)
.++=.-+. -+...|..++..+.. .+ ..-|.+..+. .+++...-..++++ +..+..+. ..
T Consensus 444 ~~lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~~-Wp~~Lys~l~iisa------------~~~q~~q~-Se- 503 (846)
T KOG2066|consen 444 PYLPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIKE-WPGHLYSVLTIISA------------TEPQIKQN-SE- 503 (846)
T ss_pred ccCCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHHh-CChhhhhhhHHHhh------------cchHHHhh-cc-
Confidence 33222222 245677777777766 22 2223333221 23332222222222 11111111 11
Q ss_pred CChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCCh
Q 038673 219 INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNV 253 (548)
Q Consensus 219 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 253 (548)
+....-.|+..|...+++++|.+++-...++++
T Consensus 504 --~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 504 --STALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred --chhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 333444599999999999999999988887654
No 371
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.13 E-value=17 Score=23.16 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=15.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHC
Q 038673 23 LIRGYILQGHLKDSISLYCSMRRE 46 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~ 46 (548)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666667777777777666654
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.11 E-value=24 Score=25.80 Aligned_cols=45 Identities=11% Similarity=-0.001 Sum_probs=32.6
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCch---hHHHHHHHHHHcCCchHHHHH
Q 038673 356 IHRNPEIAQIAANHLFELEPDKIG---NYIILSNIYASAGMWDDVSRV 400 (548)
Q Consensus 356 ~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~ 400 (548)
...+.+.|...++.+++..++.+. ++-.|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678888888888885555443 455677788888888887765
No 373
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.91 E-value=1.3e+02 Score=28.23 Aligned_cols=128 Identities=12% Similarity=0.039 Sum_probs=74.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-
Q 038673 261 LGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP- 339 (548)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 339 (548)
+-..+.+++++|+..+.+....|+..|..+.+- ...+...+.+.|.+.|+...--+++....
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nE-----------------qE~tvlel~~lyv~~g~~~~l~~~i~~sre 73 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNE-----------------QEATVLELFKLYVSKGDYCSLGDTITSSRE 73 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhH-----------------HHHHHHHHHHHHHhcCCcchHHHHHHhhHH
Confidence 344567889999999999999988888776532 12234456667777776655444443321
Q ss_pred -----CCCC-hhHHHHHHHHHHh-cCCHHHHHHHHHHHhhcCC-CCc-----hhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 340 -----VEPN-GGVWGALLGACQI-HRNPEIAQIAANHLFELEP-DKI-----GNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 340 -----~~p~-~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p-~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
.+|. ..+..+|+.-+-. ...++.-..+....++... .+. ..-.-++.++.+.|++.+|+.+...+.
T Consensus 74 ~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 74 AMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1222 4445555544432 2234555555555444111 111 122346778899999999998766543
No 374
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.80 E-value=21 Score=22.72 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=16.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 259 MILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 259 li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455667777777777777776654
No 375
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.76 E-value=80 Score=26.37 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=40.6
Q ss_pred CChhHHHHHHHHHHHCCC-hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 038673 148 KDKVAWTAMVTGYVQNAK-PREAIEYFERMQYAGVETDYVTLVGVISACAQLGV 200 (548)
Q Consensus 148 ~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 200 (548)
.+-.+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.++.+...
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 356678888888866655 33467888888888888999999999999877533
No 376
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.73 E-value=1.1e+02 Score=24.92 Aligned_cols=44 Identities=11% Similarity=0.167 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 038673 271 AAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEK 337 (548)
Q Consensus 271 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (548)
.+.++|+.|..+|+--...- -|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~-----------------------fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLAL-----------------------FYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHH-----------------------HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHH-----------------------HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 89999999999887655444 388888899999999999999864
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.14 E-value=69 Score=23.99 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=25.5
Q ss_pred HcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHH
Q 038673 100 KCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAG 139 (548)
Q Consensus 100 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 139 (548)
..|+.+.|+++++.++ +....|..++.++...|.-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4466777777777777 66666777777776666655443
No 378
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=55.69 E-value=1.3e+02 Score=30.51 Aligned_cols=115 Identities=8% Similarity=-0.032 Sum_probs=71.6
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHH
Q 038673 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGG 140 (548)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 140 (548)
..|++..|.+-....++..+-.|+..... ...+...|+++.+...+..... ....+-..++....+.|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 45666665444444444321244443333 3345677889988888776654 566677888888889999999998
Q ss_pred HHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC
Q 038673 141 LFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180 (548)
Q Consensus 141 ~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 180 (548)
+-..|... +......-....-+.|-+++++-.|++....+
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 87766533 22222222233345577888888888876654
No 379
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=55.65 E-value=2.5e+02 Score=28.82 Aligned_cols=235 Identities=13% Similarity=0.113 Sum_probs=124.1
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhhccC------CcHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCCh-HHH
Q 038673 36 SISLYCSMRREGIGPVSFTLSALFKACTEVL------DVSLGQQIHAQTILLGGFTSD-LYVGNTMIGMYVKCGFL-GCS 107 (548)
Q Consensus 36 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~------~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~-~~A 107 (548)
...+|+.... .-|+...|+..|..|...- .+.....+++...+.+...++ ..-|..+.-++.+.... +.|
T Consensus 301 ~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 301 CCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 3456665554 2356666766676665332 334455566665555434443 34555555555555433 334
Q ss_pred HHHHccCCCCCeehHHHHHHHHHhCC-ChHHH-HHHHccC----CCCChhHHHHHHHHHHHCCC-hhH-HHHHHHHHHHC
Q 038673 108 RKVFDEMPERDVVSWTELIVAYANNG-DMESA-GGLFNEL----PLKDKVAWTAMVTGYVQNAK-PRE-AIEYFERMQYA 179 (548)
Q Consensus 108 ~~~~~~m~~~~~~~~~~li~~~~~~g-~~~~A-~~~f~~m----~~~~~~~~~~li~~~~~~g~-~~~-A~~l~~~m~~~ 179 (548)
..+-.+..+.+...|-.-+....+.. +++-- .++|... ..+-...|++.. .|+ .+. .+.++-.....
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 44443444556666655554444221 21111 1112221 123344555544 122 111 12222222222
Q ss_pred CCCCCHhhH-HHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH---hcCCCHHHHHHHHhcCCC---CC
Q 038673 180 GVETDYVTL-VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY---SKCGSIDDAYRIFVGMKQ---RN 252 (548)
Q Consensus 180 g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y---~~~g~~~~A~~~~~~~~~---~~ 252 (548)
-..|+..|+ +.++.-+...+..+.|..++..+.... | .+...+.-++..= ..|| +.-++..++.|.. .|
T Consensus 454 ~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp--p-~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 454 VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP--P-FSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGAD 529 (568)
T ss_pred hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC--C-ccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCC
Confidence 246777776 456777778888888888888877653 2 4777777776542 2344 6666677766652 56
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
+..|---+.-=..+|..+.+-.++.+..+
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 66676666655667777766666655443
No 380
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.22 E-value=7.1 Score=37.17 Aligned_cols=90 Identities=13% Similarity=0.224 Sum_probs=74.0
Q ss_pred HcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 038673 324 RAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 324 ~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 401 (548)
..|.+++|++.|.... +.|. ...|.---+++.+.+....|++-+...++++|+....|-.-..+-...|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 4578999999987663 4444 4455555577888999999999999999999999888888888888899999999999
Q ss_pred HHHHhCCCccCC
Q 038673 402 RLLKMTGLKKNP 413 (548)
Q Consensus 402 ~~m~~~g~~~~~ 413 (548)
....+.+.....
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 999988876543
No 381
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=54.07 E-value=16 Score=36.58 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=69.4
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCChhHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 038673 319 VDLLGRAGCLEEALKMVEKMP-VEPNGGVWGALL-GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDD 396 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 396 (548)
...+...+.++.|..++.+.- +.||-..|-+.= .++.+.+++..|..=+.++++++|.....|..-+.++.+.+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 344556788899998888774 778755444433 778889999999999999999999988888888888888899999
Q ss_pred HHHHHHHHH
Q 038673 397 VSRVRRLLK 405 (548)
Q Consensus 397 a~~~~~~m~ 405 (548)
|...++.-.
T Consensus 91 A~~~l~~~~ 99 (476)
T KOG0376|consen 91 ALLDLEKVK 99 (476)
T ss_pred HHHHHHHhh
Confidence 988887553
No 382
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=53.61 E-value=63 Score=26.88 Aligned_cols=63 Identities=19% Similarity=0.090 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 038673 328 LEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGM 393 (548)
Q Consensus 328 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 393 (548)
-+.|.++.+-|+ .....-.........|++..|..+.+.+...+|++...-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 356777777775 333334444566789999999999999999999999888888887766553
No 383
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=52.88 E-value=1.6e+02 Score=25.89 Aligned_cols=91 Identities=12% Similarity=0.086 Sum_probs=51.7
Q ss_pred CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC---------
Q 038673 147 LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFG--------- 217 (548)
Q Consensus 147 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--------- 217 (548)
++..+.|-....+-++.-+.+++.+.|- ..+=.+++-.|-+.-++.+++++++.+-+..+.
T Consensus 104 dk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g 173 (233)
T PF14669_consen 104 DKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTG 173 (233)
T ss_pred ccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccC
Confidence 3344555555555555544444433221 112234555666777777787777776543221
Q ss_pred C---CChHhHHHHHHHHHhcCCCHHHHHHHHhc
Q 038673 218 P---INNVVVGSALIDMYSKCGSIDDAYRIFVG 247 (548)
Q Consensus 218 p---~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 247 (548)
| .+.-.+-|.....+.++|.+|.|..++++
T Consensus 174 ~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 174 PEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred ccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 0 01334566777777888888888877764
No 384
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.58 E-value=2e+02 Score=26.81 Aligned_cols=57 Identities=11% Similarity=0.005 Sum_probs=30.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHc------------CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 190 GVISACAQLGVIKYANWVCEIAEGS------------GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 190 ~ll~~~~~~g~~~~a~~~~~~~~~~------------~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
-+...|...+.+....++++++.++ |.. -..+|..-|.+|....+-..-..++++..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ---LLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ---LLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch---hhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 3444455555555555555555332 111 23456666777776666555555565443
No 385
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=52.06 E-value=1.9e+02 Score=30.01 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCC--Chh---hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038673 225 GSALIDMYSKCGSIDDAYRIFVGMKQR--NVF---SYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS 299 (548)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 299 (548)
...|+.-|.+++++++|..++..|.=. ... +.+.+.+.+.+..-.++.+..++.+...=..|....-......|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~ 490 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYR 490 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHH
Confidence 346778899999999999999998721 122 333444455555445555555665554322222211111111100
Q ss_pred hcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 038673 300 HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQ 364 (548)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~ 364 (548)
.|=...-.-....+.|.+++++|..+--++. +...|--+-......|+.+.|.
T Consensus 491 ---------d~V~~~aRRfFhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 491 ---------DPVSDLARRFFHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred ---------HHHHHHHHHHHHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 0000111224455667788888887776665 3333333333444555555554
No 386
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.55 E-value=2.6e+02 Score=28.18 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=27.3
Q ss_pred HHHHHHHHHHH---CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038673 152 AWTAMVTGYVQ---NAKPREAIEYFERMQYAGVETDYVTLVGVISA 194 (548)
Q Consensus 152 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 194 (548)
.+..+++++.+ .++.+.|+.++..|...|..|....-..+..+
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34455555554 47888888888888888877764443333333
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.53 E-value=53 Score=28.98 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=33.0
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 340 VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 340 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
..|++.++..++.++...|+.++|.+..+++..+.|.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 5789999999999999999999999999999988883
No 388
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.32 E-value=1.2e+02 Score=23.87 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQY 178 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 178 (548)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888899999999999988876
No 389
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.87 E-value=1.5e+02 Score=27.89 Aligned_cols=86 Identities=9% Similarity=0.023 Sum_probs=50.1
Q ss_pred HHHHHHHCCChhHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHh
Q 038673 156 MVTGYVQNAKPREAIEYFERMQY--AGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYS 233 (548)
Q Consensus 156 li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~ 233 (548)
=|.+++..+++.+++...-+--+ +.++|.. .-.-|-.|++.+....+.++-..-.+..-+ ....-|.+++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~N--q~lp~y~~vaELyL 164 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSN--QSLPEYGTVAELYL 164 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCccc--CCchhhHHHHHHHH
Confidence 36677778888887766554433 2234433 333444567777777777666655443222 23334666665555
Q ss_pred c-----CCCHHHHHHHH
Q 038673 234 K-----CGSIDDAYRIF 245 (548)
Q Consensus 234 ~-----~g~~~~A~~~~ 245 (548)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 3 57788887766
No 390
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.02 E-value=88 Score=25.34 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=38.2
Q ss_pred CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 338 MPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 338 m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
+.+-|++.+...-+.+|++-+|+..|.++++-+...-++....|-.++
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 346799999999999999999999999999998875555444555444
No 391
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=49.78 E-value=40 Score=31.62 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=23.0
Q ss_pred HHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHH
Q 038673 60 KACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRK 109 (548)
Q Consensus 60 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 109 (548)
++|...|.+.+|.++++..++.. +.+...+-.|+..++..|+--.|.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~k 334 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIK 334 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhh
Confidence 34444555555555555554443 4444445555555555554333333
No 392
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.06 E-value=3.5e+02 Score=28.62 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=77.9
Q ss_pred ChhHHHHHHHHHHHCC-----ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc-cCChhHHHHHHHHHHHcCCCCCChH
Q 038673 149 DKVAWTAMVTGYVQNA-----KPREAIEYFERMQYAGVETDYVTLVGVISACAQ-LGVIKYANWVCEIAEGSGFGPINNV 222 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~ 222 (548)
.....+.+...|.+.. +.+.|+.+|.+.-..| .|+...+...+.-... ..+...|.++|..+.+.|.. ..
T Consensus 287 ~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A 362 (552)
T KOG1550|consen 287 LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LA 362 (552)
T ss_pred CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HH
Confidence 3445666666676643 5667888888887777 5565555444433333 34678999999999888865 33
Q ss_pred hHHHHHHHHHh--cCCCHHHHHHHHhcCCCCCh-hhhHHHH--HHHHhcCCHHHHHHHHHHHHHcCC
Q 038673 223 VVGSALIDMYS--KCGSIDDAYRIFVGMKQRNV-FSYSSMI--LGFAMHGRAHAAIQLFGDMVKTET 284 (548)
Q Consensus 223 ~~~~~li~~y~--~~g~~~~A~~~~~~~~~~~~-~~~~~li--~~~~~~g~~~~A~~l~~~m~~~g~ 284 (548)
..+.++.--.. -..+.+.|...+.+.-+.+. .+.-.+. ..+.. ++++.+.-.+..+.+.|.
T Consensus 363 ~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 363 IYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 33333322222 23467888888887776553 2122222 22233 667777777766666543
No 393
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.03 E-value=1.9e+02 Score=26.40 Aligned_cols=25 Identities=8% Similarity=-0.173 Sum_probs=16.6
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 354 CQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
-...+++.+|+.+|+++.....+++
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccch
Confidence 3456677788888887777555544
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.45 E-value=51 Score=29.05 Aligned_cols=52 Identities=12% Similarity=-0.162 Sum_probs=33.6
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCC
Q 038673 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMP 115 (548)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 115 (548)
...+.+......+...+.-...|++.++..++..+...|+.++|.+..+++.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445444444444444432256788888888888888888888877766654
No 395
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.32 E-value=35 Score=32.23 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLT 296 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 296 (548)
.-|+..|..-.+.|++++|+.++++..+.|+.--..||...++
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 3477999999999999999999999999999877777765543
No 396
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=47.87 E-value=58 Score=33.73 Aligned_cols=74 Identities=18% Similarity=-0.004 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 316 ACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 316 ~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
..|...+.+.|..-+|-.++.+.. ....+.++-.+-+++....+++.|.+.++.+.+++|+++..-..|..+-+
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 345566666677777777765542 23446677777888999999999999999999999999877666655444
No 397
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.92 E-value=37 Score=32.08 Aligned_cols=39 Identities=10% Similarity=0.243 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVG 190 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 190 (548)
-||..|....+.|+.++|+.++++.++.|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 466888888888888888888888888876655555543
No 398
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.84 E-value=24 Score=28.75 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=24.8
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038673 162 QNAKPREAIEYFERMQYAGVETDYVTLVGVISAC 195 (548)
Q Consensus 162 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 195 (548)
..|.-..|..+|.+|+..|-+||. ++.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667799999999999999984 66666554
No 399
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.81 E-value=67 Score=20.83 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=20.8
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038673 28 ILQGHLKDSISLYCSMRREGIGPVSFTLSALFK 60 (548)
Q Consensus 28 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 60 (548)
.+.|-..++..++++|.+.|+.-+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666677777776666666666655554
No 400
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.37 E-value=52 Score=24.10 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=5.9
Q ss_pred HHHHHHHhcCCCHHH
Q 038673 226 SALIDMYSKCGSIDD 240 (548)
Q Consensus 226 ~~li~~y~~~g~~~~ 240 (548)
..|+.+|+..|++.+
T Consensus 47 G~l~qA~~e~Gkyr~ 61 (80)
T PF10579_consen 47 GYLIQAHMEWGKYRE 61 (80)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 401
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=45.58 E-value=2.8e+02 Score=26.55 Aligned_cols=87 Identities=8% Similarity=-0.020 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHHcCCCC--CChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-CChhhhHHHHHHHHhcCCHHHHHHHHH
Q 038673 201 IKYANWVCEIAEGSGFGP--INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-RNVFSYSSMILGFAMHGRAHAAIQLFG 277 (548)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~ 277 (548)
.+.+.+.++.....+..+ ..++.....+.....+.|+.+.-..+++.... ++..-...++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 467777777777642220 15777778888888888887776666666554 456667888888888888888888888
Q ss_pred HHHHcC-CCCC
Q 038673 278 DMVKTE-TKPN 287 (548)
Q Consensus 278 ~m~~~g-~~p~ 287 (548)
.....+ +++.
T Consensus 226 ~~l~~~~v~~~ 236 (324)
T PF11838_consen 226 LLLSNDKVRSQ 236 (324)
T ss_dssp HHHCTSTS-TT
T ss_pred HHcCCcccccH
Confidence 877743 4443
No 402
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.56 E-value=3.3e+02 Score=27.30 Aligned_cols=57 Identities=9% Similarity=0.016 Sum_probs=28.3
Q ss_pred HHHHhcCCCHHHHHHHHhcCCCCChh---hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQRNVF---SYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGV 289 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 289 (548)
+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..|+..
T Consensus 172 L~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 172 LIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNIM 231 (413)
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcchH
Confidence 33444556666666665544433322 1223444334556543 445555667776643
No 403
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.47 E-value=83 Score=20.40 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=18.1
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 038673 161 VQNAKPREAIEYFERMQYAGVETDYVTLVGVI 192 (548)
Q Consensus 161 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 192 (548)
.+.|-.+++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666666555555554444
No 404
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.15 E-value=4.7e+02 Score=28.97 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=37.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 343 NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 343 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
+.....+....+..+|+.+....+..-+. -|..++..+...|.|++|++++..
T Consensus 503 ~~~nretv~~l~~~~~~~e~ll~fA~l~~--------d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 503 DELNRETVYQLLASHGRQEELLQFANLIK--------DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HhhhHHHHHHHHHHccCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666778888888877766654 566677777888888888887654
No 405
>PRK10941 hypothetical protein; Provisional
Probab=45.12 E-value=1.7e+02 Score=27.50 Aligned_cols=66 Identities=14% Similarity=-0.007 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGN 380 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 380 (548)
.+.+-.+|.+.++++.|++..+.+- +.|+ +.-+.----.+.+.|.+..|..-++..++..|+++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 4556678899999999999999885 5666 5567666677999999999999999999999998743
No 406
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=45.04 E-value=3.2e+02 Score=27.05 Aligned_cols=184 Identities=19% Similarity=0.203 Sum_probs=115.9
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHhhHHHHHHH
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQ--LFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
.+..+...+++.|...++|+.--+... ...-++|+...|+. +.+-|.-..-.||..|-..++..
T Consensus 50 s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~t 115 (439)
T KOG1498|consen 50 SNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIET 115 (439)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Confidence 356666777777777777765543322 22345667666665 22333333345666666666555
Q ss_pred HhhcCCccCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHH------------HHHHHhcCCHHHHH
Q 038673 298 CSHVGLKCYGVSP-STDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGAL------------LGACQIHRNPEIAQ 364 (548)
Q Consensus 298 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~~~~~~~~~~~a~ 364 (548)
....-..+-=++. -...-..|...+-..|+.++|..++.+.+++ ||+++ +..|...+|+-.|.
T Consensus 116 Lr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~ 191 (439)
T KOG1498|consen 116 LRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQ 191 (439)
T ss_pred HHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4322110000111 1122345778888999999999999998732 33322 36788899999999
Q ss_pred HHHHHHhhc---CCCC----chhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEcc
Q 038673 365 IAANHLFEL---EPDK----IGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGD 421 (548)
Q Consensus 365 ~~~~~~~~~---~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~ 421 (548)
-+-+++... .|+- ...|..++......+.+-++-+.++..-..|-.+...--|+.+-
T Consensus 192 i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL 255 (439)
T KOG1498|consen 192 IISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVL 255 (439)
T ss_pred HHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhh
Confidence 888887762 2221 23788899988899999999999999988776665445566544
No 407
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=44.91 E-value=1.5e+02 Score=24.12 Aligned_cols=68 Identities=13% Similarity=0.249 Sum_probs=45.4
Q ss_pred HHHHHHHHhCC-CCCChh---HHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 038673 329 EEALKMVEKMP-VEPNGG---VWGALLGACQIHRNPEIAQIAANHLFE--LEPDKIGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 329 ~~A~~~~~~m~-~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
+++.+.|...+ .+-|+. .|-..+..| + ....+|..|.+ +.-..+..|...+..+...|++.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~---~---dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNC---D---EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555554 344543 344444433 3 35667888777 445566788899999999999999999986
No 408
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=44.77 E-value=2e+02 Score=27.02 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=7.0
Q ss_pred hCCChHHHHHHH
Q 038673 131 NNGDMESAGGLF 142 (548)
Q Consensus 131 ~~g~~~~A~~~f 142 (548)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666655
No 409
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=44.72 E-value=4.3e+02 Score=28.38 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=104.1
Q ss_pred HHHHHHHHHH-HcCCCCCChHhHHHHHHHHHh-cCCCHHHHHHHHhcCC----CCCh-----hhhHHHHHHHHhcCCHHH
Q 038673 203 YANWVCEIAE-GSGFGPINNVVVGSALIDMYS-KCGSIDDAYRIFVGMK----QRNV-----FSYSSMILGFAMHGRAHA 271 (548)
Q Consensus 203 ~a~~~~~~~~-~~~~~p~~~~~~~~~li~~y~-~~g~~~~A~~~~~~~~----~~~~-----~~~~~li~~~~~~g~~~~ 271 (548)
.|.+.++.+. +..+.|.....++-.+...|. ...+++.|+..+++.. +++. ..-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 3555666665 445555455667777788777 6788999999988664 1221 12234556666666665
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHH-HHHHHHcCCHHHHHHHHHhCC------CCCCh
Q 038673 272 AIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACM-VDLLGRAGCLEEALKMVEKMP------VEPNG 344 (548)
Q Consensus 272 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~------~~p~~ 344 (548)
|....++.++.--. .+..+....+..+ +..+...++...|.+.++.+. ..|-.
T Consensus 118 a~~~l~~~I~~~~~--------------------~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 118 ALKNLDKAIEDSET--------------------YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHhc--------------------cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 88888887653111 0112222333334 333434488999999888773 22334
Q ss_pred hHHHHHHHHH--HhcCCHHHHHHHHHHHhh----c--C----CCCchhHHHHHHHH--HHcCCchHHHHHHHHHH
Q 038673 345 GVWGALLGAC--QIHRNPEIAQIAANHLFE----L--E----PDKIGNYIILSNIY--ASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 345 ~~~~~ll~~~--~~~~~~~~a~~~~~~~~~----~--~----p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~ 405 (548)
.++-.++.+. ...+..+.+.+..+.+.. . + ++...++..++..+ ...|+++.+.+.++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555443 345556666666665533 1 2 22234555666654 55677778877766664
No 410
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=44.71 E-value=2.1e+02 Score=25.22 Aligned_cols=92 Identities=16% Similarity=0.066 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-----CCCChhHHHHHHH-HHHhcCC--HHHHHHHHHHHhhcCCCC-------ch
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-----VEPNGGVWGALLG-ACQIHRN--PEIAQIAANHLFELEPDK-------IG 379 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~-~~~~~~~--~~~a~~~~~~~~~~~p~~-------~~ 379 (548)
++..+-.....|++++|..-++++. ++.-...|..+.. +++.++. +-+|..++.-+....-++ +.
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~ 111 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPI 111 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHH
Confidence 4444455567788999998888773 2323445555554 5555554 445555666555522111 11
Q ss_pred hHH-HHHH----------HHHHcCCchHHHHHHHHHHh
Q 038673 380 NYI-ILSN----------IYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 380 ~~~-~l~~----------~~~~~g~~~~a~~~~~~m~~ 406 (548)
.|. -+++ -..+.|+++.|.+.++-|.+
T Consensus 112 ~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 112 AYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 221 1222 24567889999999888863
No 411
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=43.93 E-value=53 Score=24.44 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=13.7
Q ss_pred ChHHHHHHHccCCCCCeehHHHHHHHHHhCC
Q 038673 103 FLGCSRKVFDEMPERDVVSWTELIVAYANNG 133 (548)
Q Consensus 103 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 133 (548)
+.+.|.++++.++.+...+|..+..++-..|
T Consensus 45 r~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 45 RRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3444444444444444444444444444433
No 412
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.01 E-value=4.3e+02 Score=27.94 Aligned_cols=183 Identities=12% Similarity=0.006 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHHHcCCCCCChHhHHHHH--HHH-HhcCCCHHHHHHHHhcCCC--------CChhhhHHHHHHHHhcC--
Q 038673 201 IKYANWVCEIAEGSGFGPINNVVVGSAL--IDM-YSKCGSIDDAYRIFVGMKQ--------RNVFSYSSMILGFAMHG-- 267 (548)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~~~l--i~~-y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-- 267 (548)
...+.++++...+.|.. .......+ ..+ +....+++.|...|..+.+ -+......+-..|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS---EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcch---HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 46788888888777644 22222222 222 4466788888888877643 23445556666666543
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHH-cCCHHHHHHHHHhCCC--C
Q 038673 268 ---RAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGR-AGCLEEALKMVEKMPV--E 341 (548)
Q Consensus 268 ---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~--~ 341 (548)
+.+.|+.++.+.-+.|. |+...+ -..+...+. ..+...|.++|..... .
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~------------------------lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYL------------------------LGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHH------------------------HHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 56778888888877643 232221 111111111 2456788888887742 2
Q ss_pred CChhHHHHHHHH--HHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 038673 342 PNGGVWGALLGA--CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKN 412 (548)
Q Consensus 342 p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 412 (548)
++...+.+++-. -....+.+.|...+.+.-+.++.....-......+.. ++++.+.-.+..+.+.|.+-.
T Consensus 360 ~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~ 431 (552)
T KOG1550|consen 360 ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVA 431 (552)
T ss_pred hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHH
Confidence 333333333322 2244578899999999888773332222233333344 888888888888888777533
No 413
>PF14044 NETI: NETI protein
Probab=42.14 E-value=19 Score=24.13 Aligned_cols=17 Identities=35% Similarity=0.745 Sum_probs=14.3
Q ss_pred HHHHHHHHHHCCcccCC
Q 038673 445 LGDLLDRLQADGYQPNL 461 (548)
Q Consensus 445 l~~l~~~m~~~g~~pd~ 461 (548)
+.+.+.+|+++||.|-.
T Consensus 10 I~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVR 26 (57)
T ss_pred HHHHHHHHHHcCCCcee
Confidence 36889999999999943
No 414
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.53 E-value=42 Score=23.23 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=21.7
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQY 178 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 178 (548)
|-.-.-.+|.+|.+.|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444678889999999999988887754
No 415
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.49 E-value=5.3e+02 Score=28.57 Aligned_cols=173 Identities=9% Similarity=0.095 Sum_probs=88.6
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHH
Q 038673 94 MIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYF 173 (548)
Q Consensus 94 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 173 (548)
+=..|...|+++.|.+.-..-++.=...+..-...|.+.+++..|-+++.++ ..++..+.--|....+.+ ++..|
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~ 438 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTF 438 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHH
Confidence 3356777888888887754432110112223334566777888888888776 334444444555555554 55554
Q ss_pred HHHHHCCCCCCHhhHHHHH-----HHH-HccCChh----HHHHHHHH--------HHHc-CCCCCChHhHHHHHHHHHhc
Q 038673 174 ERMQYAGVETDYVTLVGVI-----SAC-AQLGVIK----YANWVCEI--------AEGS-GFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 174 ~~m~~~g~~p~~~t~~~ll-----~~~-~~~g~~~----~a~~~~~~--------~~~~-~~~p~~~~~~~~~li~~y~~ 234 (548)
-.=+-..++|...+-..++ ..+ .+.++++ ++..-++. +.+. ... .+...+.+.......
T Consensus 439 L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~--~~~~nretv~~l~~~ 516 (911)
T KOG2034|consen 439 LDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLH--KDELNRETVYQLLAS 516 (911)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhh--HHhhhHHHHHHHHHH
Confidence 3333334555554433322 222 2223222 22221111 1111 111 133334444555556
Q ss_pred CCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHH
Q 038673 235 CGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGD 278 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 278 (548)
.|+.+.+..+-.-|. -|..++.-+.+++++++|++++..
T Consensus 517 ~~~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 517 HGRQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred ccCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666655544332 366777788888888888887754
No 416
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.20 E-value=3.3e+02 Score=26.03 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=35.4
Q ss_pred ChhHHHHHH-HHHHHcCCCC-CChHhHHHHHHHHHhcCCCHH-HHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHH
Q 038673 200 VIKYANWVC-EIAEGSGFGP-INNVVVGSALIDMYSKCGSID-DAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 200 ~~~~a~~~~-~~~~~~~~~p-~~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 274 (548)
.+++..... ++|.+.+++- ..-..+|..++++--=..+-+ -|.++++ .+.+|..|+.+++.+|+.+-.+-
T Consensus 270 p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 270 PVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred CHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHHHH
Confidence 344443333 3455555441 011245666665533222111 1223332 34578889999999998876553
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.90 E-value=87 Score=23.73 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=33.2
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCC----C-----chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 354 CQIHRNPEIAQIAANHLFELEPD----K-----IGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
..+.|++..|.+.+.+....... . ......++......|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566777776655555542111 1 12344567778888999999998887753
No 418
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.39 E-value=52 Score=22.76 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=21.8
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
|-.-.-.+|.+|.+.|++++|.+..+++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445678888889999999888888765
No 419
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.25 E-value=32 Score=37.27 Aligned_cols=49 Identities=27% Similarity=0.322 Sum_probs=38.5
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038673 321 LLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 321 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 372 (548)
+...+|+++.|++.-.++. |..+|..|.......|+.+.|+..+++...
T Consensus 652 LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 3456788888888877765 677888888888888888888888887765
No 420
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.07 E-value=51 Score=29.80 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=47.6
Q ss_pred HHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 321 LLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 321 ~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
+..+.|+.+.|.+++++.- ..|+ ...|-.+-..-.+.|+.+.|.+.+++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 4556788888888888774 4454 78888888888999999999999999999988764
No 421
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.90 E-value=1.8e+02 Score=30.92 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=11.1
Q ss_pred HHHHHHHHcCChHHHHHHHccC
Q 038673 93 TMIGMYVKCGFLGCSRKVFDEM 114 (548)
Q Consensus 93 ~li~~~~~~g~~~~A~~~~~~m 114 (548)
+|..+|...|++-.+.++++..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~ 54 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSF 54 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHH
Confidence 4455555555555555554443
No 422
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.76 E-value=3.1e+02 Score=24.75 Aligned_cols=64 Identities=14% Similarity=0.034 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCHHH-------HHHHHHHHhhcC--CC----CchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 346 VWGALLGACQIHRNPEI-------AQIAANHLFELE--PD----KIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
.+.-+...|+..|+.+. |...|++..+.. |. .......++.++.+.|+.++|.+.+.++...+-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 33344456777777444 444455554422 22 234666788899999999999999999875443
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.79 E-value=2e+02 Score=21.76 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=32.9
Q ss_pred HHhCCCchHHHHHHHHHHHC----CCCCC--h--hhHHHHHHHhhccCCcHHHHHHHHHHHHhC
Q 038673 27 YILQGHLKDSISLYCSMRRE----GIGPV--S--FTLSALFKACTEVLDVSLGQQIHAQTILLG 82 (548)
Q Consensus 27 ~~~~g~~~~A~~~~~~m~~~----g~~p~--~--~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 82 (548)
..+.|++.+|++.+.+..+. +..+. . ...-.+.......|+.++|.+.+++.++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45778888887766665542 22221 1 122223344556788888888887776643
No 424
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.43 E-value=1.3e+02 Score=25.22 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=30.9
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 038673 41 CSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGF 103 (548)
Q Consensus 41 ~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 103 (548)
+.+.+.|++++.. =..+++.+...++.-.|..+|+.+.+.+ ..-+..|--.-++.+...|-
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~-p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEG-PGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhC-CCCCHhHHHHHHHHHHHCCC
Confidence 3444555554433 2334445555555566666666666655 34444433333455555553
No 425
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=34.39 E-value=2.5e+02 Score=22.78 Aligned_cols=65 Identities=17% Similarity=0.059 Sum_probs=47.0
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHHHh
Q 038673 307 GVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWG-ALLGACQIHRNPEIAQIAANHLF 371 (548)
Q Consensus 307 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~ 371 (548)
|-+--..+-.++..++.-.|..++|.++++..+-.++-...| -++..|+...+.++..++-++.+
T Consensus 61 GkP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 61 GKPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred CCcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 444455567778888888999999999999987555544444 46788888887777766655543
No 426
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=34.08 E-value=50 Score=24.15 Aligned_cols=27 Identities=22% Similarity=0.545 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHCCcccCCccc
Q 038673 438 STEIQQALGDLLDRLQADGYQPNLRSV 464 (548)
Q Consensus 438 ~~~~~~~l~~l~~~m~~~g~~pd~~~~ 464 (548)
..++...+++-..+++.+|+.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 456778888899999999999997544
No 427
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=34.08 E-value=17 Score=25.42 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=16.2
Q ss_pred ceEEEecCCcccccccccccC
Q 038673 524 REIVVRDNMRFHHFQDGKCSC 544 (548)
Q Consensus 524 ~~~~~~~~~~~h~~~~g~~s~ 544 (548)
..|=+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 356678999999999998653
No 428
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=33.92 E-value=95 Score=23.45 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=11.9
Q ss_pred hHHHHHHHccCCCCChhHHHHHHHHHH
Q 038673 135 MESAGGLFNELPLKDKVAWTAMVTGYV 161 (548)
Q Consensus 135 ~~~A~~~f~~m~~~~~~~~~~li~~~~ 161 (548)
.+.+.++++.++.++..+|..+..++-
T Consensus 50 ~~k~~~Lld~L~~RG~~AF~~F~~aL~ 76 (90)
T cd08332 50 FSQNVALLNLLPKRGPRAFSAFCEALR 76 (90)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 344444444444444444444444443
No 429
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.52 E-value=2.1e+02 Score=23.90 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=29.3
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC
Q 038673 174 ERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS 237 (548)
Q Consensus 174 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~ 237 (548)
..+++.|++++..- ..++..+...++.-.|.++|+.+.+.++. .+..|-..-++.+...|-
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~--islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPG--ISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCC--CCHhHHHHHHHHHHHCCC
Confidence 34444555544322 23344444444445566666666665544 334333334455555553
No 430
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.31 E-value=2.2e+02 Score=31.32 Aligned_cols=132 Identities=12% Similarity=0.070 Sum_probs=80.9
Q ss_pred HHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCc
Q 038673 231 MYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSP 310 (548)
Q Consensus 231 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p 310 (548)
....||+++.|.+.-..+. +..+|..|...-..+|+.+-|+..|++...
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------------------------- 700 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN----------------------------- 700 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh-----------------------------
Confidence 4567899999988777664 456899999999999999999999988765
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
|+.|--+|.-.|+.++-.++..-...+.|..+- .....-.|++++-.++++..-. -+-+|.. -..
T Consensus 701 ----fekLsfLYliTgn~eKL~Km~~iae~r~D~~~~---~qnalYl~dv~ervkIl~n~g~----~~laylt----a~~ 765 (1202)
T KOG0292|consen 701 ----FEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQ---FQNALYLGDVKERVKILENGGQ----LPLAYLT----AAA 765 (1202)
T ss_pred ----hhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHH---HHHHHHhccHHHHHHHHHhcCc----ccHHHHH----Hhh
Confidence 555556666677777766555544434443221 1112234556655555443221 1112221 123
Q ss_pred cCCchHHHHHHHHHHhCC
Q 038673 391 AGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 391 ~g~~~~a~~~~~~m~~~g 408 (548)
.|.-++|.++.++...++
T Consensus 766 ~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 766 HGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred cCcHHHHHHHHHhhcccc
Confidence 465667777777766543
No 431
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=32.53 E-value=1.8e+02 Score=30.41 Aligned_cols=111 Identities=13% Similarity=0.043 Sum_probs=70.7
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcC
Q 038673 169 AIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 169 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 248 (548)
+-.++..|.. .+.|--..++...--+...|+...|.+.+..+....+. ........|.+...+.|...+|..++.+.
T Consensus 592 ~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~--~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 592 GSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPL--QQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChh--hhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 4444555533 23444444443333344568888888877776554433 23444555677777777777888777654
Q ss_pred C---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 249 K---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 249 ~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
. ...+.++-.+-.+|....+.+.|++.|++..+.
T Consensus 669 l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 669 LAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 4 244567777888888888899999999888774
No 432
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.41 E-value=8.4e+02 Score=28.22 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC-------------------C-----------C--hhhhHHHHHHHHhcCCHHHHH
Q 038673 226 SALIDMYSKCGSIDDAYRIFVGMKQ-------------------R-----------N--VFSYSSMILGFAMHGRAHAAI 273 (548)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~~~~~~~-------------------~-----------~--~~~~~~li~~~~~~g~~~~A~ 273 (548)
-.+.-+|..+|...+|...|.+... + . ..-|-..++.+-+++..+.+.
T Consensus 924 fmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vc 1003 (1480)
T KOG4521|consen 924 FMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVC 1003 (1480)
T ss_pred HhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3344557888888888888877641 0 1 123566777788888888888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 274 QLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 274 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
++-...++. +.|+..+. ..+++++.+-....|.+-+|...+-.-
T Consensus 1004 QlA~~AIe~-l~dd~ps~--------------------a~~~t~vFnhhldlgh~~qAy~ai~~n 1047 (1480)
T KOG4521|consen 1004 QLAVKAIEN-LPDDNPSV--------------------ALISTTVFNHHLDLGHWFQAYKAILRN 1047 (1480)
T ss_pred HHHHHHHHh-CCCcchhH--------------------HHHHHHHHHhhhchhhHHHHHHHHHcC
Confidence 887777764 44443321 223455555555566666665555443
No 433
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=32.29 E-value=2.5e+02 Score=28.19 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCC-----------CCChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 038673 122 WTELIVAYANNGDMESAGGLFNELP-----------LKDKVAWTAMVTGYVQNAKPREAIEYFERMQ 177 (548)
Q Consensus 122 ~~~li~~~~~~g~~~~A~~~f~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 177 (548)
...|++.++-.||+..|+++++.+. .-.+.++--+.-+|.-.+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888876654 2245567777778888888888888887653
No 434
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.09 E-value=1.3e+02 Score=26.01 Aligned_cols=61 Identities=5% Similarity=-0.031 Sum_probs=35.5
Q ss_pred HHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChH
Q 038673 43 MRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLG 105 (548)
Q Consensus 43 m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 105 (548)
+...|+.++..-. .++..+....+.-.|.++++.+.+.+ ...+..|--.-++.+...|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~-~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAE-PQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhC-CCCCcchHHHHHHHHHHCCCEE
Confidence 4455666554433 34444444455567778888887776 5555555444556666666543
No 435
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=31.97 E-value=6.7e+02 Score=26.91 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=43.5
Q ss_pred CCchHHHHHHHHHHHCC---CCCChhhHHHHHHHhh--ccCCcHHHHHHHHHHHHhC--------CCCCChhHHHHHHHH
Q 038673 31 GHLKDSISLYCSMRREG---IGPVSFTLSALFKACT--EVLDVSLGQQIHAQTILLG--------GFTSDLYVGNTMIGM 97 (548)
Q Consensus 31 g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~a~~--~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~li~~ 97 (548)
+++..|++.++.+...- ..|-..++..++.+.. +.+..+.+.+..+.+.... ...|-..++..+++.
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 67777887777766532 2333444555555543 3344455555555443321 012344556666554
Q ss_pred H--HHcCChHHHHHHHccC
Q 038673 98 Y--VKCGFLGCSRKVFDEM 114 (548)
Q Consensus 98 ~--~~~g~~~~A~~~~~~m 114 (548)
+ ...|+++.+...+.++
T Consensus 233 ~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3 3556665665555444
No 436
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=31.79 E-value=2.2e+02 Score=21.21 Aligned_cols=61 Identities=10% Similarity=0.226 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHH
Q 038673 206 WVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAA 272 (548)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 272 (548)
.++..+.+.|+- +... .-...+.....+.|.++++.++.++..+|.++..++-..|+..-|
T Consensus 20 ~v~~~L~~~~Vl---t~~~---~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVF---TPDM---IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCC---CHHH---HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 455666666654 2222 222233455678888888888888888888888888877766554
No 437
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=31.64 E-value=6.1e+02 Score=26.32 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 038673 22 ALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC 101 (548)
Q Consensus 22 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 101 (548)
+++..+.++-..+-...+..+|...| -+...|..+++.+... ..+.-..+++++++.. -.|+.....|+..|-+
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~yEk- 144 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKYEK- 144 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHHHH-
Confidence 44444444444444444445554432 2344444455544444 2233444444444432 2233333334443333
Q ss_pred CChHHHHHHHcc
Q 038673 102 GFLGCSRKVFDE 113 (548)
Q Consensus 102 g~~~~A~~~~~~ 113 (548)
++.+.+...|.+
T Consensus 145 ik~sk~a~~f~K 156 (711)
T COG1747 145 IKKSKAAEFFGK 156 (711)
T ss_pred hchhhHHHHHHH
Confidence 444444444433
No 438
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.59 E-value=4.5e+02 Score=24.85 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=23.3
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHhhH
Q 038673 157 VTGYVQNAKPREAIEYFERMQYAGVETDYVTL 188 (548)
Q Consensus 157 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 188 (548)
..-..+.+++++|+..|.+....|+..|..+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 34456677888888888888888877665543
No 439
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.46 E-value=1.2e+02 Score=23.95 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCc
Q 038673 22 ALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDV 68 (548)
Q Consensus 22 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~ 68 (548)
.++..+...+.+-.|.++++.+.+.+..++..|....|+.+...|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 35556666667777888888888777666766666666666655543
No 440
>PF15469 Sec5: Exocyst complex component Sec5
Probab=31.43 E-value=3.5e+02 Score=23.48 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=14.7
Q ss_pred chHHHHHHHHHHhCCCccCCceeEE
Q 038673 394 WDDVSRVRRLLKMTGLKKNPGYSWL 418 (548)
Q Consensus 394 ~~~a~~~~~~m~~~g~~~~~~~s~~ 418 (548)
.++..+++..+.+.+...+|.+.|+
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 3455555566666666666666554
No 441
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.41 E-value=1.9e+02 Score=24.83 Aligned_cols=18 Identities=6% Similarity=-0.230 Sum_probs=8.6
Q ss_pred ChhHHHHHHHHHHHcCCC
Q 038673 200 VIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~ 217 (548)
..-.|.++++.+.+.+..
T Consensus 40 ~hlSa~eI~~~L~~~~~~ 57 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQ 57 (169)
T ss_pred CCCCHHHHHHHHHhhCCC
Confidence 334455555555554433
No 442
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=31.13 E-value=1.8e+02 Score=23.78 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=28.0
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
+...-+.+.|+++|+++++..|++...+..|+..+-.
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 3444567999999999999999999898888877654
No 443
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.94 E-value=3.9e+02 Score=24.69 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=62.6
Q ss_pred HHHHHcCCHHHHHHHHHhC---------CCCCChhHHHH-------HH----HHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 320 DLLGRAGCLEEALKMVEKM---------PVEPNGGVWGA-------LL----GACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m---------~~~p~~~~~~~-------ll----~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
+-+.+.|++.+|..-|.+. +-+|...-|-- |+ .++...|++-++++-...++..+|.|..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 4456788888888776654 24565555532 22 3455678888889999999999999999
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 380 NYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
+|..-+.+.+..=+.++|..=+....+
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 998888887777777777776666644
No 444
>PRK11619 lytic murein transglycosylase; Provisional
Probab=30.78 E-value=7.2e+02 Score=26.92 Aligned_cols=367 Identities=9% Similarity=-0.051 Sum_probs=190.3
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCh
Q 038673 25 RGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFL 104 (548)
Q Consensus 25 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 104 (548)
..+.+.+++...+..+. . .+.+...-.....+....|+.++|......+-..| ...+..++.+++.+.+.|.+
T Consensus 107 ~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 107 NELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCChHHHHHHHHHHHcCCC
Confidence 34445666666555221 1 12344444556666667777666666666665555 44455666666666655543
Q ss_pred ------------------HHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHH--HCC
Q 038673 105 ------------------GCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYV--QNA 164 (548)
Q Consensus 105 ------------------~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~--~~g 164 (548)
..|..+...+..........++..+.. ...+..++.... ++...-..++.++. ...
T Consensus 180 t~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~ 255 (644)
T PRK11619 180 DPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASVARQ 255 (644)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHHHHh
Confidence 333333333321111112222222222 222333333221 22211111122222 234
Q ss_pred ChhHHHHHHHHHHHCC-CCCCHh--hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHH
Q 038673 165 KPREAIEYFERMQYAG-VETDYV--TLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDA 241 (548)
Q Consensus 165 ~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A 241 (548)
+.+.|..++....... ..+... ....+.......+...++...+....... .+......-+....+.++++.+
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~----~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS----QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc----CCcHHHHHHHHHHHHccCHHHH
Confidence 5688899988875433 333322 12223222223222455555555433222 2344445555566689999999
Q ss_pred HHHHhcCCC--CChhhhHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc-cC--CCCcCHH--
Q 038673 242 YRIFVGMKQ--RNVFSYSS-MILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK-CY--GVSPSTD-- 313 (548)
Q Consensus 242 ~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-~~--~~~p~~~-- 313 (548)
...+..|.. .+...|.- +..++...|+.++|...|+++.. . .+|-.++.+- +.|.. .. ...|...
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa~-~Lg~~~~~~~~~~~~~~~~ 404 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAAQ-RLGEEYPLKIDKAPKPDSA 404 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHHH-HcCCCCCCCCCCCCchhhh
Confidence 999999874 22222322 44565668999999999999743 1 2454444332 22321 11 1111110
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCchhHHHHHH
Q 038673 314 ----HYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELE---PDKIGNYIILSN 386 (548)
Q Consensus 314 ----~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~ 386 (548)
.-..-+..+...|...+|...+..+....+......+.......|..+.+..........+ -.-|..|...+.
T Consensus 405 ~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~ 484 (644)
T PRK11619 405 LTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFR 484 (644)
T ss_pred hccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHH
Confidence 1122345667789999998888776434555556666666778888888887776543311 112335777777
Q ss_pred HHHHcCCchHHHHHHHHHHhCCCccCC
Q 038673 387 IYASAGMWDDVSRVRRLLKMTGLKKNP 413 (548)
Q Consensus 387 ~~~~~g~~~~a~~~~~~m~~~g~~~~~ 413 (548)
.+++.-.++.+.-.--...|.++.|..
T Consensus 485 ~~a~~~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 485 RYTSGKGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred HHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence 777777777766443333467776553
No 445
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.62 E-value=5.6e+02 Score=25.63 Aligned_cols=123 Identities=12% Similarity=0.009 Sum_probs=73.8
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHhhHHHH--------HHHHHccCChhHHHHHHHHHHH-----cCCCCCChHhHHHH
Q 038673 161 VQNAKPREAIEYFERMQYAGVETDYVTLVGV--------ISACAQLGVIKYANWVCEIAEG-----SGFGPINNVVVGSA 227 (548)
Q Consensus 161 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--------l~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~~~ 227 (548)
..+.++++|..+-+.....-..-|..|+..+ -.++-..|++..-..++....+ +... ......|.
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e--~qavLiN~ 214 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEE--GQAVLINL 214 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcch--hHHHHHHH
Confidence 3456777777666554433222233343322 2233445555555444443332 2233 35677899
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHH-------HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMIL-------GFAMHGRAHAAIQLFGDMVKTETKPN 287 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~-------~~~~~g~~~~A~~l~~~m~~~g~~p~ 287 (548)
|++.|...+.++.|.++..+..-|+..+-|-... -.+-++++..|.+.|-.... ..|.
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r--kapq 279 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR--KAPQ 279 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH--hCcc
Confidence 9999999999999999999988665544332222 22446788899998888776 3454
No 446
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=30.38 E-value=2.9e+02 Score=27.86 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 038673 123 TELIVAYANNGDMESAGGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG 199 (548)
Q Consensus 123 ~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 199 (548)
..|+.-|...|++.+|.....++.-| ..+.+-+++.+.-+.|+-...+.++++.-..|+. |.+.+-.++.+..
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhhhh
Q ss_pred --------ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 200 --------VIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 200 --------~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
++..|.+.|+...+.+.. +-.++-.|-+.+
T Consensus 589 dsl~DlsLDvPna~ekf~~~Ve~~~~---~G~i~~~l~~~~ 626 (645)
T KOG0403|consen 589 DSLPDLSLDVPNAYEKFERYVEECFQ---NGIISKQLRDLC 626 (645)
T ss_pred ccCcccccCCCcHHHHHHHHHHHHHH---cCchhHHhhhcc
No 447
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=29.34 E-value=3.1e+02 Score=22.25 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=46.3
Q ss_pred HHHHHHHhcCC--CCChh---hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHH
Q 038673 239 DDAYRIFVGMK--QRNVF---SYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTD 313 (548)
Q Consensus 239 ~~A~~~~~~~~--~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~ 313 (548)
+.+.+.|.... +.|+. .|-..+..+ ++..++|..|..+|+--....|
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~Alf---------------------- 101 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALF---------------------- 101 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHH----------------------
Confidence 44555555544 24443 344444332 3467789999998776555443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEK 337 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~ 337 (548)
|......+-..|++.+|.++|+.
T Consensus 102 -Ye~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 102 -YEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHc
Confidence 77888888899999999998863
No 448
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=29.31 E-value=7.8e+02 Score=28.08 Aligned_cols=33 Identities=9% Similarity=0.260 Sum_probs=23.8
Q ss_pred hHhHHHHHHHHHhcCC--CHHHHHHHHhcCCCCCh
Q 038673 221 NVVVGSALIDMYSKCG--SIDDAYRIFVGMKQRNV 253 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~~~~ 253 (548)
...-...++.+|++.+ ++++|++...++.+.+.
T Consensus 811 ~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~ 845 (928)
T PF04762_consen 811 KDKYLQPILTAYVKKSPPDLEEALQLIKELREEDP 845 (928)
T ss_pred chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcCh
Confidence 4555667788888887 78888888877775433
No 449
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=28.98 E-value=1e+02 Score=27.94 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=49.7
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 354 CQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
....++.+.+.+++.+++++-|.....|..+...-.++|+++.|.+.+++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4567899999999999999999999999999999999999999999999887644
No 450
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=28.56 E-value=9.2e+02 Score=27.46 Aligned_cols=323 Identities=12% Similarity=0.104 Sum_probs=154.3
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHH-------hhccCC---cHHHHHHHHHHHHhCCCCCCh
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKA-------CTEVLD---VSLGQQIHAQTILLGGFTSDL 88 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a-------~~~~~~---~~~a~~~~~~~~~~~~~~~~~ 88 (548)
++-++=.++.....++.|+..|++...+ ++--...|.+..++ ....|+ +++|..-|+.+.... -.|=.
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 554 (932)
T PRK13184 477 SCLAVPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGV-GAPLE 554 (932)
T ss_pred ecccCcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCC-CCchH
Confidence 4445557778888999999999998874 33334445444332 223333 556666666654332 23333
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC-----C------Cee--------------hHHHHHHHHH---hCCChHHHHH
Q 038673 89 YVGNTMIGMYVKCGFLGCSRKVFDEMPE-----R------DVV--------------SWTELIVAYA---NNGDMESAGG 140 (548)
Q Consensus 89 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~------~~~--------------~~~~li~~~~---~~g~~~~A~~ 140 (548)
.... .-.|-+.|++++-.+.+.-..+ | |.. +|.-|+-+.- +.-...+-..
T Consensus 555 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (932)
T PRK13184 555 YLGK--ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEK 632 (932)
T ss_pred HHhH--HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHH
Confidence 3333 3457888888776655443321 1 111 1121221111 1111122223
Q ss_pred HHccCCC-----------CChh-H----HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHH
Q 038673 141 LFNELPL-----------KDKV-A----WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYA 204 (548)
Q Consensus 141 ~f~~m~~-----------~~~~-~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 204 (548)
+|+.+.. +.+. . +..+++-+ .|..---.++|++... .+|..+...++-..+..|.++-+
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 707 (932)
T PRK13184 633 FLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFW--SGFTPFLPELFQRAWD---LRDYRALADIFYVACDLGNWEFF 707 (932)
T ss_pred HHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHH--hcCchhhHHHHHHHhh---cccHHHHHHHHHHHHHhccHHHH
Confidence 3333221 1111 1 11222211 1333333445554443 23445666666666788888877
Q ss_pred HHHHHHHHHcC--CC-C-------CChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC-hhhhHHHHHHHHhcCCHHHHH
Q 038673 205 NWVCEIAEGSG--FG-P-------INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN-VFSYSSMILGFAMHGRAHAAI 273 (548)
Q Consensus 205 ~~~~~~~~~~~--~~-p-------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~ 273 (548)
.+..+.+...- .. | ..+...|-.-+.+......++++.+.+....... ...+..++.-....++.+...
T Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (932)
T PRK13184 708 SQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLILYAFDLFAIQALLDEEGESII 787 (932)
T ss_pred HHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHHHHHHHHHHHHHHHhccchHHH
Confidence 77666554311 00 0 0111223333555566666666666555443211 122333333333445555444
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC--CChhHHHHHH
Q 038673 274 QLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVE--PNGGVWGALL 351 (548)
Q Consensus 274 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll 351 (548)
.+.+..... ..|... ........|.+|.-..++++|-++++..+.. .+..++.-++
T Consensus 788 ~~~~~~~~~-~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (932)
T PRK13184 788 QLLQLIYDY-VSEEER---------------------HDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVL 845 (932)
T ss_pred HHHHHHHhc-cCChhh---------------------hhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHH
Confidence 444444432 111111 0112344567777888888888888777521 2333444444
Q ss_pred HHH--HhcCCHHHHHHHHHHHhh
Q 038673 352 GAC--QIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 352 ~~~--~~~~~~~~a~~~~~~~~~ 372 (548)
.+| +..++.+.|..-|....+
T Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 846 YGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHHHHHhcCchhHHHHHHhhccc
Confidence 333 345666666666666553
No 451
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.45 E-value=2.9e+02 Score=25.47 Aligned_cols=58 Identities=17% Similarity=0.112 Sum_probs=39.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHH----HcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhc
Q 038673 189 VGVISACAQLGVIKYANWVCEIAE----GSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVG 247 (548)
Q Consensus 189 ~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 247 (548)
..+..-|...|+++.|.++++.+. +.|+.. ....+...+..++.+.|+.++...+--+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~-l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWS-LLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566777788888888887764 344443 4667777788888888888777665433
No 452
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.36 E-value=9.8e+02 Score=27.73 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=62.5
Q ss_pred HHhCCCchHHHHHHHHHHHC-----------------------CCCCC-----hhhHHHHHHHhhccCCcHHHHHHHHHH
Q 038673 27 YILQGHLKDSISLYCSMRRE-----------------------GIGPV-----SFTLSALFKACTEVLDVSLGQQIHAQT 78 (548)
Q Consensus 27 ~~~~g~~~~A~~~~~~m~~~-----------------------g~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~ 78 (548)
|...|.+.+|+..|.+.... |-.|. .+-|..+++.+-+.+-.+.+.++-..+
T Consensus 930 yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~A 1009 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKA 1009 (1480)
T ss_pred eecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 66778889999988876541 11111 112445556666666666666666665
Q ss_pred HHhCCCCCC----hhHHHHHHHHHHHcCChHHHHHHHccCCC--CCeehHHHHHHHHHhCCChHH
Q 038673 79 ILLGGFTSD----LYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RDVVSWTELIVAYANNGDMES 137 (548)
Q Consensus 79 ~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~ 137 (548)
++.- ++| ..+++.+.+-....|.+.+|.+.+-..+. +-......++..++.+|+++.
T Consensus 1010 Ie~l--~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1010 IENL--PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHhC--CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHH
Confidence 5542 222 23566666666667777777666554443 222344556666666666543
No 453
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.34 E-value=6.1e+02 Score=25.28 Aligned_cols=56 Identities=9% Similarity=-0.161 Sum_probs=39.8
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHHH--ccCChhHHHHHHHHHHHc
Q 038673 158 TGYVQNAKPREAIEYFERMQYAGVETDYV--TLVGVISACA--QLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 158 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 214 (548)
..+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445889999999999999887 666554 3445555554 345778888888877654
No 454
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=27.95 E-value=5e+02 Score=24.20 Aligned_cols=142 Identities=13% Similarity=0.064 Sum_probs=71.2
Q ss_pred HHHhCCCchHHHHHHHHHH----HCCCCCChhhHHHHHHHhhccCC-----cHHHHHHHHHHHHhCC-CCCChhHHHHHH
Q 038673 26 GYILQGHLKDSISLYCSMR----REGIGPVSFTLSALFKACTEVLD-----VSLGQQIHAQTILLGG-FTSDLYVGNTMI 95 (548)
Q Consensus 26 ~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~ll~a~~~~~~-----~~~a~~~~~~~~~~~~-~~~~~~~~~~li 95 (548)
.+.+.|+...|-++-..|. +.++++|......++..+...+. .+-..+...+- +.++ -.-|+.....+.
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a 97 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLA 97 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHH
Confidence 3556666666655444433 34666666665555555443322 12233333333 3321 234677888888
Q ss_pred HHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHH
Q 038673 96 GMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFER 175 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 175 (548)
..|.+.|++.+|+.-|-.-..++...+..++.-....|...++ |. ...-.+--|.-.++...|..++..
T Consensus 98 ~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------dl-fi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 98 EKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------DL-FIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp HHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------HH-HHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------hH-HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8888888888888877655544444443344333333333222 11 122233456667778888877776
Q ss_pred HHHC
Q 038673 176 MQYA 179 (548)
Q Consensus 176 m~~~ 179 (548)
..+.
T Consensus 167 f~~~ 170 (260)
T PF04190_consen 167 FTSK 170 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 455
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=27.62 E-value=2.4e+02 Score=26.86 Aligned_cols=20 Identities=0% Similarity=0.213 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHCCChhHH
Q 038673 150 KVAWTAMVTGYVQNAKPREA 169 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A 169 (548)
.-.|..|+.+++..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 44677777777777766543
No 456
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=27.54 E-value=5.7e+02 Score=24.71 Aligned_cols=117 Identities=10% Similarity=0.067 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc---CCCHHHHHH
Q 038673 167 REAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK---CGSIDDAYR 243 (548)
Q Consensus 167 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~---~g~~~~A~~ 243 (548)
+.-+.++++..+.+ +-+.......|..+.+..+.+...+-++.+...... +...|...++..-. .-.++....
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~---~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG---SPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 45567777777663 334455667788888888888888888888887644 77778777776554 234556666
Q ss_pred HHhcCC-------CCC-------hh-------hhHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC
Q 038673 244 IFVGMK-------QRN-------VF-------SYSSMILGFAMHGRAHAAIQLFGDMVKTET-KPN 287 (548)
Q Consensus 244 ~~~~~~-------~~~-------~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~ 287 (548)
+|.+.. ... .. .+.-+..-..+.|..+.|+.+++-+.+.++ .|.
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 555433 111 11 222233345678999999999999998654 444
No 457
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.08 E-value=2.3e+02 Score=24.84 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=18.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 352 GACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
..|.+.|.+++|.+++++..+ +|++..
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 457777777777777777776 665543
No 458
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=26.60 E-value=9.9e+02 Score=27.17 Aligned_cols=92 Identities=11% Similarity=-0.055 Sum_probs=46.7
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 310 PSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 310 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
++...-...+.+++..|..+.+...+......+|..+-...+.++...+..+ +...+..+++ +| +...-...+.++.
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~-a~~~L~~~L~-D~-~~~VR~~A~~aL~ 863 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADV-AVPALVEALT-DP-HLDVRKAAVLALT 863 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccc-hHHHHHHHhc-CC-CHHHHHHHHHHHh
Confidence 3445566667777777765554333333333456555555666666665433 3333333332 22 3335555566666
Q ss_pred HcCCchHHHHHHHHH
Q 038673 390 SAGMWDDVSRVRRLL 404 (548)
Q Consensus 390 ~~g~~~~a~~~~~~m 404 (548)
+.+.-..+...+...
T Consensus 864 ~~~~~~~a~~~L~~a 878 (897)
T PRK13800 864 RWPGDPAARDALTTA 878 (897)
T ss_pred ccCCCHHHHHHHHHH
Confidence 542233455555444
No 459
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=26.59 E-value=6.8e+02 Score=25.28 Aligned_cols=233 Identities=10% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHH
Q 038673 59 FKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESA 138 (548)
Q Consensus 59 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 138 (548)
|.++...| ..+...+-..++ -.++...+...+.++....+......+.+.+..++.........++...+..+-.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~---~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~ 119 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALA---EADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAE 119 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHh---hCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHH
Q ss_pred HHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038673 139 GGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGP 218 (548)
Q Consensus 139 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 218 (548)
..+..-+..++.....+.+.++...+ ..+...+....+ .+|...-...+.+++..+..+..-.+......
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~--~~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d----- 189 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHR--HDPGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYLRD----- 189 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhc--cChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHHcC-----
Q ss_pred CChHhHHHHHHHHHhcCCCHHHHHHHHhc-CCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 219 INNVVVGSALIDMYSKCGSIDDAYRIFVG-MKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 219 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
.+..+-..-+.+....|. +.|...... ...++....-.+.......|.. ++++.+....+
T Consensus 190 -~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~-~a~~~L~~ll~---------------- 250 (410)
T TIGR02270 190 -SDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGP-DAQAWLRELLQ---------------- 250 (410)
T ss_pred -CCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCch-hHHHHHHHHhc----------------
Q ss_pred HhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 298 CSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
+..+-...+.++++.|+..-+.-+++.|
T Consensus 251 -------------d~~vr~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 251 -------------AAATRREALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred -------------ChhhHHHHHHHHHHcCCcchHHHHHHHh
No 460
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=26.54 E-value=6.5e+02 Score=25.05 Aligned_cols=196 Identities=13% Similarity=0.068 Sum_probs=107.7
Q ss_pred CCChHHHHHHHccCCC-----C----ChhHHHHHHHHHHHCCChhHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHc----
Q 038673 132 NGDMESAGGLFNELPL-----K----DKVAWTAMVTGYVQNAKPREAIEYFERMQY-AGVETDYVTLVGVISACAQ---- 197 (548)
Q Consensus 132 ~g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~---- 197 (548)
.++.++|.+-+-...+ . +......++..|...++|+.--+...-+.+ .| . .......++.-+..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrg-q-lk~ai~~Mvq~~~~y~~~ 102 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRG-Q-LKQAIQSMVQQAMTYIDG 102 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh-H-HHHHHHHHHHHHHHhccC
Confidence 5667777665444321 1 333456667777788888776655554433 22 1 22233334433321
Q ss_pred cCChhHHHHHHHHH---HHcCCCC-CChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHH------------HH
Q 038673 198 LGVIKYANWVCEIA---EGSGFGP-INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSM------------IL 261 (548)
Q Consensus 198 ~g~~~~a~~~~~~~---~~~~~~p-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l------------i~ 261 (548)
..+.+.-..+.+.+ .+..+-. ......-..|...+-.+|++++|..++.+.+ +.||.+| +.
T Consensus 103 ~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~---VETygsm~~~ekV~fiLEQmr 179 (439)
T KOG1498|consen 103 TPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ---VETYGSMEKSEKVAFILEQMR 179 (439)
T ss_pred CCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---hhhhhhhHHHHHHHHHHHHHH
Confidence 11223323332222 2211110 0144555678888999999999999998875 4455543 33
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTET-KPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP- 339 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 339 (548)
.|...+++-.|--+-++....-+ .||... .-..-|+.|+......+.+-.+-+.|+..-
T Consensus 180 KOG~~~D~vra~i~skKI~~K~F~~~~~~~-------------------lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~ 240 (439)
T KOG1498|consen 180 LCLLRLDYVRAQIISKKINKKFFEKPDVQE-------------------LKLKYYELMIRLGLHDRAYLNVCRSYRAIYD 240 (439)
T ss_pred HHHHhhhHHHHHHHHHHhhHHhcCCccHHH-------------------HHHHHHHHHHHhcccccchhhHHHHHHHHhc
Confidence 45555666666555555443221 222211 123568999999989999988888888774
Q ss_pred ---CCCChhHHHHHH
Q 038673 340 ---VEPNGGVWGALL 351 (548)
Q Consensus 340 ---~~p~~~~~~~ll 351 (548)
++.|+.-|...+
T Consensus 241 t~~vk~d~~kw~~vL 255 (439)
T KOG1498|consen 241 TGNVKEDPEKWIEVL 255 (439)
T ss_pred ccccccChhhhhhhh
Confidence 333344465555
No 461
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=26.21 E-value=1e+02 Score=22.18 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=24.0
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhh
Q 038673 28 ILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACT 63 (548)
Q Consensus 28 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~ 63 (548)
...|+.+.+.+++++....|..|.......+..+..
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~ 47 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAME 47 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345788888888888888777776665555555443
No 462
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.97 E-value=6.8e+02 Score=25.08 Aligned_cols=156 Identities=12% Similarity=0.035 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC--------CCCCCh
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRREGI--GPVSFTLSALFKACTEVLDVSLGQQIHAQTILLG--------GFTSDL 88 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~--------~~~~~~ 88 (548)
...-+..-|...|+.+.|++.|.+.+..-. +-....|-.+|....-.|+|.....+-....+.. .+++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 466777888889999999999998665311 1123446666666677788776666655554431 033444
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCC----------CCCeehHHHHHHHHHhCCChHHHHHH-----HccCCCCChhHH
Q 038673 89 YVGNTMIGMYVKCGFLGCSRKVFDEMP----------ERDVVSWTELIVAYANNGDMESAGGL-----FNELPLKDKVAW 153 (548)
Q Consensus 89 ~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~~~~~~~~li~~~~~~g~~~~A~~~-----f~~m~~~~~~~~ 153 (548)
..+..|.....+ ++..|.+.|-... .|.-++-...+.+++.-++-+--..+ |....+-.+..+
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence 555555555444 6666666554333 12222222333333333332222222 333334455556
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHH
Q 038673 154 TAMVTGYVQNAKPREAIEYFERMQY 178 (548)
Q Consensus 154 ~~li~~~~~~g~~~~A~~l~~~m~~ 178 (548)
..+..-| .+++...++++++++.
T Consensus 310 ~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 310 EILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHh--hhhHHHHHHHHHHhcc
Confidence 5555554 3567777777777654
No 463
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=25.65 E-value=5.4e+02 Score=23.78 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=51.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH-HhCCCCC
Q 038673 264 AMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMV-EKMPVEP 342 (548)
Q Consensus 264 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p 342 (548)
....+++.|+.-|.+.+. +.|+..+| |..=+..+.+..+++.+..== ....+.|
T Consensus 21 f~~k~y~~ai~~y~raI~--~nP~~~~Y-----------------------~tnralchlk~~~~~~v~~dcrralql~~ 75 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAIC--INPTVASY-----------------------YTNRALCHLKLKHWEPVEEDCRRALQLDP 75 (284)
T ss_pred cchhhhchHHHHHHHHHh--cCCCcchh-----------------------hhhHHHHHHHhhhhhhhhhhHHHHHhcCh
Confidence 334567777776666665 66776665 555555666677777665432 2333567
Q ss_pred ChhHHHHHH-HHHHhcCCHHHHHHHHHHHhh
Q 038673 343 NGGVWGALL-GACQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 343 ~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~ 372 (548)
|.+-=..++ .+......++.|+..+.+...
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 755544444 445566677888887777754
No 464
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=25.31 E-value=3e+02 Score=20.74 Aligned_cols=60 Identities=8% Similarity=0.018 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHH
Q 038673 206 WVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHA 271 (548)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (548)
.++..+.+.|+- +...+. ...+.....+.+.++++.++.++..+|..+..++-..|+..-
T Consensus 24 ~v~~~L~~~gvl---t~~~~~---~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~L 83 (90)
T cd08332 24 ELLIHLLQKDIL---TDSMAE---SIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEHL 83 (90)
T ss_pred HHHHHHHHcCCC---CHHHHH---HHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHHH
Confidence 455556666554 322222 222344567888888888888888888888888866555433
No 465
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.97 E-value=4.8e+02 Score=22.94 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 317 CMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353 (548)
Q Consensus 317 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 353 (548)
..+-.|.+.|.+++|.+++++.--.|+......-+..
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 3456788999999999999988646665555444433
No 466
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.97 E-value=1.8e+02 Score=22.86 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=29.8
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCh
Q 038673 156 MVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVI 201 (548)
Q Consensus 156 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 201 (548)
++..+...+..-.|.++++.+.+.+..++..|....|..+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4444555555666777777777776666777766666666666643
No 467
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=24.94 E-value=1.2e+02 Score=30.59 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=28.9
Q ss_pred CCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038673 338 MPVEPN--GGVWGALLGACQIHRNPEIAQIAANHLFELEPDK 377 (548)
Q Consensus 338 m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 377 (548)
..++|. ..++++-++.+.+++++..|..+.++++++.|..
T Consensus 292 c~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 292 CKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp S---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 345555 4566777788899999999999999999998864
No 468
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=24.94 E-value=4e+02 Score=22.09 Aligned_cols=66 Identities=12% Similarity=-0.112 Sum_probs=39.8
Q ss_pred CCChhhHHHHHHHhhccC---CcHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCChHHHHHHHccCC
Q 038673 49 GPVSFTLSALFKACTEVL---DVSLGQQIHAQTILLGGFTSD-LYVGNTMIGMYVKCGFLGCSRKVFDEMP 115 (548)
Q Consensus 49 ~p~~~~~~~ll~a~~~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 115 (548)
.++..+--.+..++.++. +..++..+++.+.+.. .+.. ..-.--|.-++.+.++++.++++.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 455555555555555544 4667888888888743 2222 2233345556778888888888866554
No 469
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=24.82 E-value=5.5e+02 Score=23.63 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=76.6
Q ss_pred HHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHH
Q 038673 125 LIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYA 204 (548)
Q Consensus 125 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 204 (548)
-+..|.+.-++.-|-..++++.+| +.+-.+++ -|.+..+.+---++.+-....+++-+...+..++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP-IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP-IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh-HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 344555555665555555555544 11111111 2333333222233333334445554444444333 2345666666
Q ss_pred HHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 038673 205 NWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTET 284 (548)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 284 (548)
...++.-.. |+. +-.+..+|.-..+|.+.....|+..+. .++.++|.+++.++-+.|.
T Consensus 212 lNnLQst~~-g~g--------------------~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgy 269 (333)
T KOG0991|consen 212 LNNLQSTVN-GFG--------------------LVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGY 269 (333)
T ss_pred HHHHHHHhc-ccc--------------------ccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCC
Confidence 555543321 111 123456777777888888888887654 6789999999999999998
Q ss_pred CCCHh
Q 038673 285 KPNGV 289 (548)
Q Consensus 285 ~p~~~ 289 (548)
.|...
T Consensus 270 sp~Di 274 (333)
T KOG0991|consen 270 SPEDI 274 (333)
T ss_pred CHHHH
Confidence 88764
No 470
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.72 E-value=5.4e+02 Score=27.57 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=53.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCH------HHH
Q 038673 258 SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCL------EEA 331 (548)
Q Consensus 258 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~------~~A 331 (548)
+|..+|..+|++..+.++++......- |-+.-...||..+....+.|.+ +.|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~----------------------~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~ 90 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNK----------------------GDKILLPMINLYIREIIQRGSFELTDVLSNA 90 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCc----------------------CCeeehhHHHHHHHHHHhcCCccHHHHHHHH
Confidence 788999999999999999998876411 1122234466667777777764 346
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHh
Q 038673 332 LKMVEKMPVEPNGGVWGALLGACQI 356 (548)
Q Consensus 332 ~~~~~~m~~~p~~~~~~~ll~~~~~ 356 (548)
.++++...+.-|..||..|+.+...
T Consensus 91 ~~~lq~a~ln~d~~t~all~~~sln 115 (1117)
T COG5108 91 KELLQQARLNGDSLTYALLCQASLN 115 (1117)
T ss_pred HHHHHHhhcCCcchHHHHHHHhhcC
Confidence 6677776667778888777765444
No 471
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=24.61 E-value=2.1e+02 Score=21.44 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=10.5
Q ss_pred hHHHHHHHccCCCCChhHHHHHHHHH
Q 038673 135 MESAGGLFNELPLKDKVAWTAMVTGY 160 (548)
Q Consensus 135 ~~~A~~~f~~m~~~~~~~~~~li~~~ 160 (548)
.++|..+++.++.++..+|.....++
T Consensus 44 ~~qa~~Lld~L~trG~~Af~~F~~aL 69 (86)
T cd08323 44 KEKAVMLINMILTKDNHAYVSFYNAL 69 (86)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 33344444444444444444444333
No 472
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=24.43 E-value=1.3e+02 Score=24.02 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC
Q 038673 22 ALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVL 66 (548)
Q Consensus 22 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~ 66 (548)
.++..+...+.+-.|.++++.|.+.|...+..|.-..|+.+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 455555566666777777777777665556555544455444443
No 473
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=24.35 E-value=5.9e+02 Score=23.77 Aligned_cols=62 Identities=8% Similarity=0.055 Sum_probs=36.8
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCC-CCC-----CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAG-VET-----DYVTLVGVISACAQLGVIKYANWVCEIAEGSGF 216 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 216 (548)
.++.-+.+.|+.+.|-.++--+...+ ... +......++......++++.+.++.+.+...+.
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~ 251 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDP 251 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 45556666777777666655554322 111 233344566666777888888887777765543
No 474
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=24.34 E-value=6.4e+02 Score=24.22 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-CCeehHHHHHHHH----------HhCCChHHHHHH
Q 038673 73 QIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-RDVVSWTELIVAY----------ANNGDMESAGGL 141 (548)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~----------~~~g~~~~A~~~ 141 (548)
++++.+...+ +.|.-+.+.=+.-++.++=.+.+...+++.+.. |.. |..++..| .-.|++..-.++
T Consensus 264 EL~~~L~~~~-i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r--fd~Ll~iCcsmlil~Re~il~~DF~~nmkL 340 (370)
T KOG4567|consen 264 ELWRHLEEKE-IHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR--FDFLLYICCSMLILVRERILEGDFTVNMKL 340 (370)
T ss_pred HHHHHHHhcC-CCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh--hHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3444444444 555544444444444444555555555555443 111 22222222 234667766777
Q ss_pred HccCCCCChhHHHHHH
Q 038673 142 FNELPLKDKVAWTAMV 157 (548)
Q Consensus 142 f~~m~~~~~~~~~~li 157 (548)
++.-+.-|+...-++.
T Consensus 341 LQ~yp~tdi~~~l~~A 356 (370)
T KOG4567|consen 341 LQNYPTTDISKMLAVA 356 (370)
T ss_pred HhcCCCCCHHHHHHHH
Confidence 6666555554443333
No 475
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.98 E-value=1.3e+02 Score=21.04 Aligned_cols=32 Identities=9% Similarity=-0.001 Sum_probs=14.9
Q ss_pred ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC
Q 038673 51 VSFTLSALFKACTEVLDVSLGQQIHAQTILLG 82 (548)
Q Consensus 51 ~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 82 (548)
+...++.++..++.-..++.+...+...++.|
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444444444444444444444444
No 476
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.90 E-value=1.7e+02 Score=26.24 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHccC---------ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcC
Q 038673 186 VTLVGVISACAQLG---------VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 186 ~t~~~ll~~~~~~g---------~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 248 (548)
.-|..+..+|++.| +++--.++++..++.|++- .-+.+|+++|+--.-.-++++..++|..+
T Consensus 164 eE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~k-viPHIYssiIDk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 164 EEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEK-VIPHVYSSIIDKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred HHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCe-eccccceeccccccCCCCHHHHHHHHHHh
Confidence 34566666666665 4455667777777777663 45677777777666666677777776654
No 477
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=23.88 E-value=1.8e+02 Score=17.55 Aligned_cols=13 Identities=8% Similarity=-0.281 Sum_probs=5.6
Q ss_pred HHhcCCHHHHHHH
Q 038673 354 CQIHRNPEIAQIA 366 (548)
Q Consensus 354 ~~~~~~~~~a~~~ 366 (548)
+-..|++++|+.+
T Consensus 11 ~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 11 FYQKGKYDEAIHF 23 (36)
T ss_dssp HHHTT-HHHHHHH
T ss_pred HHHHhhHHHHHHH
Confidence 3444444444444
No 478
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=23.75 E-value=1e+03 Score=26.48 Aligned_cols=184 Identities=13% Similarity=0.061 Sum_probs=103.4
Q ss_pred HcCChHHHHHHHccCC----CCCee-------hHHHHHHH-HHhCCChHHHHHHHccC----C----CCChhHHHHHHHH
Q 038673 100 KCGFLGCSRKVFDEMP----ERDVV-------SWTELIVA-YANNGDMESAGGLFNEL----P----LKDKVAWTAMVTG 159 (548)
Q Consensus 100 ~~g~~~~A~~~~~~m~----~~~~~-------~~~~li~~-~~~~g~~~~A~~~f~~m----~----~~~~~~~~~li~~ 159 (548)
...++++|..++.+.. .|+.. .|+++-.. ....|++++|.++-+.. + ...++.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4578888888877654 33222 45555443 34568888888774433 2 3367778888888
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHhhHHH---H--HHHHHccCCh--hHHHHHHHHHHHcCC--CCC--ChHhHHHHH
Q 038673 160 YVQNAKPREAIEYFERMQYAGVETDYVTLVG---V--ISACAQLGVI--KYANWVCEIAEGSGF--GPI--NNVVVGSAL 228 (548)
Q Consensus 160 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---l--l~~~~~~g~~--~~a~~~~~~~~~~~~--~p~--~~~~~~~~l 228 (548)
..-.|++++|..+..+..+..-.-|...+.. + ...+-..|.. ++....+........ .|. .-..++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 8999999999988877665422233333322 2 1224455632 223333333322111 110 133455556
Q ss_pred HHHHhcCCCHHHHHHHHhcCC------CCCh-h---hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 038673 229 IDMYSKCGSIDDAYRIFVGMK------QRNV-F---SYSSMILGFAMHGRAHAAIQLFGDMVKTETKP 286 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~------~~~~-~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 286 (548)
...+.+ ++.+..-...-. .+.. . .+..|+..+...|+.++|...+.++......+
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 666665 333333222211 1211 1 22367778888999999999999998764444
No 479
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.61 E-value=7.7e+02 Score=24.84 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHH---CCC-CCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHH
Q 038673 167 REAIEYFERMQY---AGV-ETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242 (548)
Q Consensus 167 ~~A~~l~~~m~~---~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~ 242 (548)
++...++..... .|+ ..+......++..+ .|+...+..+++.+...+.. .+.. ...
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~--It~~----------------~v~ 213 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDS--ITLE----------------LLE 213 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCC--CCHH----------------HHH
Confidence 445555554432 133 44444444444432 57777777777766543211 1222 222
Q ss_pred HHHhcC---CCCChhhhHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 243 RIFVGM---KQRNVFSYSSMILGFAM---HGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 243 ~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
+++... ..++...+..+++++.+ .++.+.|+..+..|.+.|..|....-..++.+
T Consensus 214 ~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 214 EALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222211 11222334455555554 47899999999999998888776544333333
No 480
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=23.59 E-value=4e+02 Score=25.86 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC--C--CCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP--V--EPN--GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~--~--~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
|--=.+-|.+..++..|...|.+-- - .|| .+.|+.-..+-...|++..++.-..+++..+|.+...|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 4344456778899999999998762 1 233 344444445556678999999999999999999988888888888
Q ss_pred HHcCCchHHHHHHHHH
Q 038673 389 ASAGMWDDVSRVRRLL 404 (548)
Q Consensus 389 ~~~g~~~~a~~~~~~m 404 (548)
....++++|....+..
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8888877776655443
No 481
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.48 E-value=6.8e+02 Score=24.18 Aligned_cols=83 Identities=8% Similarity=-0.014 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHhCCC------------chHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC
Q 038673 15 KNPFLWTALIRGYILQGH------------LKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLG 82 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~------------~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 82 (548)
.|+.+|=.++..--..-. .+.-+.++++.++.. +-+...+...|+.+.+..+.+...+.++.++...
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 367777777754322211 234556666666652 2244455566666666666666677777777653
Q ss_pred CCCCChhHHHHHHHHHHH
Q 038673 83 GFTSDLYVGNTMIGMYVK 100 (548)
Q Consensus 83 ~~~~~~~~~~~li~~~~~ 100 (548)
+.+...|...++....
T Consensus 96 --~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 96 --PGSPELWREYLDFRQS 111 (321)
T ss_pred --CCChHHHHHHHHHHHH
Confidence 5566667666665443
No 482
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=23.23 E-value=4.1e+02 Score=21.59 Aligned_cols=106 Identities=8% Similarity=0.011 Sum_probs=65.9
Q ss_pred hHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHH----HHHhhcc-------CCcHHHHH
Q 038673 5 PRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSAL----FKACTEV-------LDVSLGQQ 73 (548)
Q Consensus 5 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----l~a~~~~-------~~~~~a~~ 73 (548)
|..++-.....+ -....++.+.+..-.-.++++..++....-.|..+. ... ++.|-.. +.....-.
T Consensus 8 A~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl-~~yI~~cI~~ce~~kd~~~q~R~VRlvcv 84 (126)
T PF10155_consen 8 AIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFL-HMYISNCIKSCESIKDKYMQNRLVRLVCV 84 (126)
T ss_pred HHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHH-HHHHHHHHHHHHhhcccccccchhhhHHH
Confidence 444444443322 377778888888888888888888887664554432 333 3333321 22334455
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccC
Q 038673 74 IHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEM 114 (548)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 114 (548)
+...+++.+ .......+..+-..+.+..++.+|..+|+-+
T Consensus 85 fl~sLir~~-i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 85 FLQSLIRNK-IIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HHHHHHHcC-CCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 566677776 5555666777777777888888888887654
No 483
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.99 E-value=4.6e+02 Score=26.36 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCCC-----------CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQ-----------RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
.+...|+..++-.|++..|.++++.+.- -.+.++--+.-+|...+++.+|++.|....-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777888888777776641 2344566666678888888888888877653
No 484
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=22.80 E-value=1e+02 Score=24.25 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHCCcccCCccc
Q 038673 439 TEIQQALGDLLDRLQADGYQPNLRSV 464 (548)
Q Consensus 439 ~~~~~~l~~l~~~m~~~g~~pd~~~~ 464 (548)
...+..-..+.++|+..||.||..+.
T Consensus 48 ~~L~~yH~lv~~EM~~RGY~~~~~W~ 73 (120)
T TIGR02328 48 YKLFAYHLLVMEEMATRGYHVSKQWL 73 (120)
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhhc
Confidence 34444556789999999999999776
No 485
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=22.78 E-value=1.9e+02 Score=29.27 Aligned_cols=102 Identities=13% Similarity=-0.017 Sum_probs=55.9
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChh---hhHHHHHHHHhcCCHHHH
Q 038673 196 AQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVF---SYSSMILGFAMHGRAHAA 272 (548)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A 272 (548)
.....++.|..++..+++.... .+..|..=..++.+.+++..|..=+....+-++. .|--=..++...+.+.+|
T Consensus 15 l~~~~fd~avdlysKaI~ldpn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPN---CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCc---ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3445666666666666665533 4444444446666777766666666555554421 111111223334455566
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhhcC
Q 038673 273 IQLFGDMVKTETKPNGVTFIGVLTACSHVG 302 (548)
Q Consensus 273 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 302 (548)
+..|+.... +.|+..-+...+.-|....
T Consensus 92 ~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 92 LLDLEKVKK--LAPNDPDATRKIDECNKIV 119 (476)
T ss_pred HHHHHHhhh--cCcCcHHHHHHHHHHHHHH
Confidence 666655554 7788777777776665443
No 486
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=22.55 E-value=6.1e+02 Score=23.35 Aligned_cols=58 Identities=9% Similarity=0.117 Sum_probs=38.8
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 038673 138 AGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQ 197 (548)
Q Consensus 138 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 197 (548)
+..+|.-..+|.+.....|+..+ ..+++++|.+.+.++-+.|..|.. ..+++.+++-.
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~ 284 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED-IITTLFRVVKN 284 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHh
Confidence 34456666677777777777654 456788999999998888887754 33445555433
No 487
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=22.40 E-value=2.5e+02 Score=26.23 Aligned_cols=55 Identities=20% Similarity=0.117 Sum_probs=47.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 352 GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
+++.+.++++.|....++.+.++|.++.-..--+-+|.+.|...-|.+-+....+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 6788899999999999999999999987777788899999999999888776543
No 488
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=22.13 E-value=1.5e+02 Score=19.33 Aligned_cols=28 Identities=18% Similarity=0.423 Sum_probs=21.0
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 038673 24 IRGYILQGHLKDSISLYCSMRREGIGPV 51 (548)
Q Consensus 24 i~~~~~~g~~~~A~~~~~~m~~~g~~p~ 51 (548)
|+.+...|--.+++++.-++.+.|+.|.
T Consensus 11 iS~lLntgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 11 ISDLLNTGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHCCCCHH
Confidence 4556667888888888888888887664
No 489
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=21.79 E-value=1.1e+02 Score=29.31 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=57.7
Q ss_pred CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHH--HHHHHHHHHcCChHHHH
Q 038673 31 GHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVG--NTMIGMYVKCGFLGCSR 108 (548)
Q Consensus 31 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~ 108 (548)
--..+|.++|++..+.| ..+|+. -+.+...|. .++.+.+. ..++.+| ..|.-+--+.|++.+|.
T Consensus 230 ~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~------~~da~~rR---Dtnvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSP------QHEAQLRR---DTNVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhcc------chhhhhhc---ccchhhHHHHHHHHHHHHhhhHHHHH
Confidence 34677888888887643 223331 111222222 22333333 2344444 34555555788999999
Q ss_pred HHHccCCC--CCeeh---HHHHHHHHHhCCChHHHHHH---HccCCCCC--hhHHHH
Q 038673 109 KVFDEMPE--RDVVS---WTELIVAYANNGDMESAGGL---FNELPLKD--KVAWTA 155 (548)
Q Consensus 109 ~~~~~m~~--~~~~~---~~~li~~~~~~g~~~~A~~~---f~~m~~~~--~~~~~~ 155 (548)
+.|+.+.+ |-... ...+|.++....-+.+...+ ++.+..|. ...|++
T Consensus 296 K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTa 352 (556)
T KOG3807|consen 296 KIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTA 352 (556)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHH
Confidence 98887654 31111 23466666665555444444 55555442 345654
No 490
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=21.79 E-value=6.2e+02 Score=25.52 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=46.1
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-CCee--hHHHHH---HH-----HHhCCChHHHHHHHccCCCC----
Q 038673 84 FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-RDVV--SWTELI---VA-----YANNGDMESAGGLFNELPLK---- 148 (548)
Q Consensus 84 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~--~~~~li---~~-----~~~~g~~~~A~~~f~~m~~~---- 148 (548)
+.||.++.|-+.+.++.+-..+-...+++...+ .|+. -+-++| ++ -.+...-+++.++++.|+..
T Consensus 179 itPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~e 258 (669)
T KOG3636|consen 179 ITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVE 258 (669)
T ss_pred cCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccc
Confidence 677777777777777766666666666665443 3332 222222 11 13445567788888887732
Q ss_pred ChhHHHHHHHHHHH
Q 038673 149 DKVAWTAMVTGYVQ 162 (548)
Q Consensus 149 ~~~~~~~li~~~~~ 162 (548)
|+.-+-.|..-|+.
T Consensus 259 DvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 259 DVPDFFSLAQYYSD 272 (669)
T ss_pred cchhHHHHHHHHhh
Confidence 55566666666553
No 491
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.58 E-value=9e+02 Score=24.94 Aligned_cols=126 Identities=15% Similarity=0.074 Sum_probs=81.3
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCC-CCCC--Hh-----hHHHHHHH-HHccCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 157 VTGYVQNAKPREAIEYFERMQYAG-VETD--YV-----TLVGVISA-CAQLGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 157 i~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~-----t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
+.+=.-.|++.+|++-...|++.- -.|. .. ....++.. |...+.++.|..-|..+.+.--.-..-...-..
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 334455799999999999997632 1232 11 12223333 456678888888777766543221012333455
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCCCChhhhHHH--------HHH--HHhcCCHHHHHHHHHHHHHc
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSM--------ILG--FAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l--------i~~--~~~~g~~~~A~~l~~~m~~~ 282 (548)
+.-.|.+.|+.++-.++++.+..+|..++.+- +.| ....+++.+|...+++-.+-
T Consensus 410 lAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 67889999999999999999987766554431 112 13468899999999887763
No 492
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.39 E-value=4e+02 Score=20.73 Aligned_cols=21 Identities=14% Similarity=0.439 Sum_probs=11.5
Q ss_pred HHHHHHHCCChhHHHHHHHHH
Q 038673 156 MVTGYVQNAKPREAIEYFERM 176 (548)
Q Consensus 156 li~~~~~~g~~~~A~~l~~~m 176 (548)
++..|...+++++|..-+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 444555555555555555554
No 493
>PRK14700 recombination factor protein RarA; Provisional
Probab=21.38 E-value=7.3e+02 Score=23.75 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=34.6
Q ss_pred ChhHHHHHHHHHHH---CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 038673 149 DKVAWTAMVTGYVQ---NAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG 199 (548)
Q Consensus 149 ~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 199 (548)
+-..+-.+|+++.+ -.+.+.|+-++-+|.+.|-.|....=..++.++-.-|
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 33344455666654 4788999999999999997776655555555555444
No 494
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.35 E-value=4e+02 Score=20.73 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=29.3
Q ss_pred HHHHHHHhCCChHHHHHHHccCCCCC--hhHHHHHHHHHHHCC--ChhHHHHHHHHHHHCC
Q 038673 124 ELIVAYANNGDMESAGGLFNELPLKD--KVAWTAMVTGYVQNA--KPREAIEYFERMQYAG 180 (548)
Q Consensus 124 ~li~~~~~~g~~~~A~~~f~~m~~~~--~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g 180 (548)
.++..|...++.++|..-+.++..|+ ...-..++......+ .-+.+..++..+.+.+
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 45566667777777777777766542 112223333333332 2233445555555554
No 495
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.31 E-value=9.2e+02 Score=24.92 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=74.3
Q ss_pred HHHhcCCCHHHHHHHHhcCCC---C---------ChhhhHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCHh-
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQ---R---------NVFSYSSMILGFAMHGRAHAAIQLFGDMVK-------TETKPNGV- 289 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~---~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~p~~~- 289 (548)
+.+.-.|++.+|.+++....- + .-..||.|-..+.+.|.+..+..+|.+..+ .|++|...
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 445567999999998876541 1 123467777777788888888888887764 23333211
Q ss_pred hHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHh
Q 038673 290 TFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQI 356 (548)
Q Consensus 290 t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~ 356 (548)
|. ..-+.-...||+=+ .|...|++-.|.+.|.+.. +..++..|-.|..+|..
T Consensus 328 tl--------------s~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TL--------------SQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred eh--------------hcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 00 00111234566644 4567899999999998774 67889999999988864
No 496
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=21.25 E-value=1.6e+02 Score=23.48 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=25.9
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG 199 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 199 (548)
.++......+..-.|.++++.|.+.+...+..|....|..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 445555555556666777777776666666666555555555555
No 497
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.16 E-value=3.8e+02 Score=24.69 Aligned_cols=60 Identities=8% Similarity=0.061 Sum_probs=43.1
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---------CChhhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---------RNVFSYSSMILGFAMHGRAHAAIQLFGDMV 280 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 280 (548)
...+...+..-|.+.|++++|.++|+.+.. ....+...+..++...|+.+..+.+--+|.
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 445556788889999999999999988852 122345556677788898888887665554
No 498
>PRK09857 putative transposase; Provisional
Probab=21.04 E-value=5.7e+02 Score=24.38 Aligned_cols=65 Identities=8% Similarity=0.072 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 038673 347 WGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411 (548)
Q Consensus 347 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 411 (548)
+..++......++.+.-.++++.+.+..|........++.-+.+.|.-+++.++.+.|...|+..
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 45566555667787777888888877667666677788888888888888999999999888863
No 499
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=21.02 E-value=94 Score=21.68 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=17.3
Q ss_pred CCChhHHHHHHHHHHHCC-CCCCH
Q 038673 163 NAKPREAIEYFERMQYAG-VETDY 185 (548)
Q Consensus 163 ~g~~~~A~~l~~~m~~~g-~~p~~ 185 (548)
.-+++.|+..|.++...| ++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 457889999999998765 55553
No 500
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=20.78 E-value=7.7e+02 Score=25.77 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCChHHHHHHHccCC
Q 038673 92 NTMIGMYVKCGFLGCSRKVFDEMP 115 (548)
Q Consensus 92 ~~li~~~~~~g~~~~A~~~~~~m~ 115 (548)
..|+.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 356667888888888888877775
Done!