Query 038673
Match_columns 548
No_of_seqs 698 out of 3836
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 23:35:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.1E-36 2.1E-40 316.9 37.2 395 3-407 70-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.6E-33 1.2E-37 295.6 29.7 381 2-389 133-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.8E-26 1.3E-30 228.2 36.2 351 23-406 5-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5E-26 1.7E-30 227.4 36.0 361 1-393 14-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 4.2E-28 1.4E-32 247.7 19.5 213 34-302 7-224 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.8E-27 6.3E-32 243.0 21.7 202 4-235 8-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 4.8E-23 1.7E-27 213.3 28.0 357 17-407 6-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 9E-23 3.1E-27 207.8 27.9 325 16-387 25-372 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 1.9E-21 6.4E-26 198.0 27.3 305 85-407 23-358 (450)
10 3fp2_A TPR repeat-containing p 99.9 2.6E-20 8.9E-25 194.0 34.2 359 17-408 25-492 (537)
11 2gw1_A Mitochondrial precursor 99.9 1.2E-20 4E-25 195.4 26.7 357 2-384 22-489 (514)
12 3ieg_A DNAJ homolog subfamily 99.8 4.7E-18 1.6E-22 166.8 33.9 328 16-390 2-352 (359)
13 1b89_A Protein (clathrin heavy 99.8 7.6E-19 2.6E-23 171.5 23.1 342 2-400 19-365 (449)
14 3ieg_A DNAJ homolog subfamily 99.8 3.6E-17 1.2E-21 160.4 35.6 308 52-407 3-335 (359)
15 3fp2_A TPR repeat-containing p 99.8 1.6E-18 5.6E-23 180.4 27.3 357 1-382 40-500 (537)
16 3hym_B Cell division cycle pro 99.8 2.2E-17 7.6E-22 160.1 29.3 295 50-394 20-321 (330)
17 3hym_B Cell division cycle pro 99.8 5.5E-16 1.9E-20 150.2 32.9 287 15-361 20-322 (330)
18 1fch_A Peroxisomal targeting s 99.8 4.1E-17 1.4E-21 161.1 22.3 273 100-402 37-354 (368)
19 3mkr_A Coatomer subunit epsilo 99.8 8E-16 2.7E-20 146.5 28.5 250 127-406 7-263 (291)
20 4eqf_A PEX5-related protein; a 99.7 5.9E-17 2E-21 159.9 19.4 256 118-402 64-351 (365)
21 2xm6_A Protein corresponding t 99.7 1.3E-14 4.4E-19 149.3 37.1 352 14-409 36-434 (490)
22 4g1t_A Interferon-induced prot 99.7 2.2E-15 7.6E-20 154.1 30.9 367 17-418 51-470 (472)
23 4eqf_A PEX5-related protein; a 99.7 7.3E-17 2.5E-21 159.3 17.5 257 15-278 63-352 (365)
24 1fch_A Peroxisomal targeting s 99.7 1.6E-16 5.5E-21 156.8 19.2 257 16-279 63-356 (368)
25 3mkr_A Coatomer subunit epsilo 99.7 9.7E-16 3.3E-20 145.9 23.7 264 98-399 9-286 (291)
26 3cv0_A Peroxisome targeting si 99.7 5.3E-16 1.8E-20 150.1 21.7 255 120-403 22-311 (327)
27 1b89_A Protein (clathrin heavy 99.7 4.5E-17 1.6E-21 159.0 13.1 279 64-400 15-304 (449)
28 2ooe_A Cleavage stimulation fa 99.7 1.9E-14 6.6E-19 149.5 33.9 359 16-406 12-453 (530)
29 2xm6_A Protein corresponding t 99.7 1.2E-14 4.1E-19 149.5 30.8 347 2-390 59-452 (490)
30 2ooe_A Cleavage stimulation fa 99.7 7.4E-15 2.5E-19 152.6 29.3 376 2-407 28-492 (530)
31 3cv0_A Peroxisome targeting si 99.7 6.8E-16 2.3E-20 149.3 18.3 259 16-281 20-314 (327)
32 3spa_A Mtrpol, DNA-directed RN 99.7 4.6E-17 1.6E-21 171.1 8.4 146 120-267 128-286 (1134)
33 3spa_A Mtrpol, DNA-directed RN 99.7 8.2E-17 2.8E-21 169.2 9.7 120 150-302 127-250 (1134)
34 1xi4_A Clathrin heavy chain; a 99.6 3.1E-13 1.1E-17 146.7 34.6 333 20-391 988-1327(1630)
35 3uq3_A Heat shock protein STI1 99.6 4.6E-14 1.6E-18 131.3 20.0 226 150-407 5-236 (258)
36 1xi4_A Clathrin heavy chain; a 99.6 1.3E-12 4.5E-17 141.9 32.2 355 3-400 1002-1377(1630)
37 2pl2_A Hypothetical conserved 99.6 6.5E-14 2.2E-18 127.2 17.3 207 149-404 4-211 (217)
38 3u4t_A TPR repeat-containing p 99.6 2.4E-13 8.3E-18 127.7 21.8 243 121-391 5-268 (272)
39 4g1t_A Interferon-induced prot 99.5 4.3E-13 1.5E-17 137.0 21.3 328 16-384 93-470 (472)
40 2ho1_A Type 4 fimbrial biogene 99.5 2.2E-12 7.6E-17 119.6 23.5 203 150-381 37-246 (252)
41 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.6E-13 1.2E-17 126.6 18.3 238 131-401 17-269 (275)
42 3uq3_A Heat shock protein STI1 99.5 5E-13 1.7E-17 124.2 18.3 223 17-281 5-235 (258)
43 2vq2_A PILW, putative fimbrial 99.5 3.5E-12 1.2E-16 115.8 23.4 206 149-383 7-221 (225)
44 2h6f_A Protein farnesyltransfe 99.5 5.1E-13 1.8E-17 131.5 19.0 242 120-390 98-365 (382)
45 2pl2_A Hypothetical conserved 99.5 2.9E-13 9.9E-18 122.9 15.6 206 15-249 3-212 (217)
46 2q7f_A YRRB protein; TPR, prot 99.5 4.4E-13 1.5E-17 123.5 16.8 210 149-387 22-236 (243)
47 2ho1_A Type 4 fimbrial biogene 99.5 3.3E-12 1.1E-16 118.5 22.4 198 185-408 37-239 (252)
48 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.3E-13 8E-18 128.0 14.3 243 29-276 17-269 (275)
49 2vq2_A PILW, putative fimbrial 99.5 8.2E-12 2.8E-16 113.2 21.9 198 184-407 7-211 (225)
50 2h6f_A Protein farnesyltransfe 99.5 1.4E-12 4.8E-17 128.4 17.8 228 149-406 96-347 (382)
51 2q7f_A YRRB protein; TPR, prot 99.5 2.2E-12 7.7E-17 118.7 17.5 197 184-408 22-223 (243)
52 3u4t_A TPR repeat-containing p 99.5 8.7E-12 3E-16 117.0 21.6 232 151-408 4-251 (272)
53 3e4b_A ALGK; tetratricopeptide 99.5 7.8E-12 2.7E-16 126.8 22.7 345 23-409 9-389 (452)
54 1ouv_A Conserved hypothetical 99.4 6.1E-11 2.1E-15 111.5 27.2 224 149-409 5-253 (273)
55 3sf4_A G-protein-signaling mod 99.4 6E-12 2E-16 125.4 20.2 297 52-395 9-364 (406)
56 1ouv_A Conserved hypothetical 99.4 3.9E-11 1.3E-15 112.8 23.2 223 121-378 8-256 (273)
57 4a1s_A PINS, partner of inscut 99.4 1.5E-12 5E-17 130.4 13.3 234 152-406 88-371 (411)
58 4abn_A Tetratricopeptide repea 99.4 2.7E-12 9.2E-17 131.0 14.8 209 166-403 84-317 (474)
59 3e4b_A ALGK; tetratricopeptide 99.4 8E-12 2.7E-16 126.7 16.3 358 2-405 19-419 (452)
60 4a1s_A PINS, partner of inscut 99.4 2.8E-11 9.6E-16 121.0 20.1 276 54-376 50-375 (411)
61 3vtx_A MAMA; tetratricopeptide 99.4 5.2E-11 1.8E-15 104.6 18.6 162 221-407 4-170 (184)
62 3sf4_A G-protein-signaling mod 99.3 8.3E-12 2.8E-16 124.4 14.8 265 15-281 7-335 (406)
63 3nf1_A KLC 1, kinesin light ch 99.3 3.4E-12 1.1E-16 122.2 11.4 237 149-406 26-306 (311)
64 3ro2_A PINS homolog, G-protein 99.3 5.1E-12 1.8E-16 122.0 12.6 261 127-407 13-332 (338)
65 3ro2_A PINS homolog, G-protein 99.3 1.3E-11 4.6E-16 119.1 15.4 262 19-282 7-332 (338)
66 4gyw_A UDP-N-acetylglucosamine 99.3 3.1E-11 1.1E-15 128.3 17.1 162 220-406 7-173 (723)
67 2ond_A Cleavage stimulation fa 99.3 2.8E-10 9.4E-15 109.1 22.3 214 136-378 33-275 (308)
68 3nf1_A KLC 1, kinesin light ch 99.3 2.4E-11 8.1E-16 116.2 14.2 247 88-376 27-310 (311)
69 3vtx_A MAMA; tetratricopeptide 99.3 9.3E-11 3.2E-15 103.0 16.6 167 184-378 4-175 (184)
70 2ond_A Cleavage stimulation fa 99.3 8.8E-10 3E-14 105.6 24.1 215 34-282 33-270 (308)
71 3ulq_A Response regulator aspa 99.3 3.1E-10 1.1E-14 112.4 21.0 201 150-372 143-367 (383)
72 4abn_A Tetratricopeptide repea 99.3 8.8E-11 3E-15 119.8 17.2 213 34-279 85-318 (474)
73 3as5_A MAMA; tetratricopeptide 99.2 6.9E-10 2.4E-14 96.9 19.5 162 221-407 7-173 (186)
74 4e6h_A MRNA 3'-END-processing 99.2 7.1E-09 2.4E-13 108.9 29.9 366 15-409 64-572 (679)
75 1hz4_A MALT regulatory protein 99.2 2.4E-08 8.1E-13 98.3 29.7 274 21-338 18-319 (373)
76 4i17_A Hypothetical protein; T 99.2 5.9E-09 2E-13 94.9 22.2 207 148-387 5-223 (228)
77 3ulq_A Response regulator aspa 99.1 6.1E-09 2.1E-13 103.0 23.3 234 23-281 109-367 (383)
78 3as5_A MAMA; tetratricopeptide 99.1 4.1E-09 1.4E-13 91.9 19.1 157 122-282 11-173 (186)
79 3q15_A PSP28, response regulat 99.1 9.3E-09 3.2E-13 101.5 23.4 223 129-372 111-364 (378)
80 1hz4_A MALT regulatory protein 99.1 1.5E-08 5.3E-13 99.6 24.6 235 152-406 55-321 (373)
81 3edt_B KLC 2, kinesin light ch 99.1 1.1E-09 3.8E-14 102.7 14.3 201 185-406 43-280 (283)
82 4gyw_A UDP-N-acetylglucosamine 99.1 2.8E-09 9.6E-14 113.3 16.9 161 149-338 8-171 (723)
83 3q15_A PSP28, response regulat 99.0 4E-08 1.4E-12 97.0 23.7 232 24-281 108-364 (378)
84 4i17_A Hypothetical protein; T 99.0 5.5E-09 1.9E-13 95.1 15.4 198 183-407 5-209 (228)
85 3edt_B KLC 2, kinesin light ch 99.0 1.3E-08 4.3E-13 95.4 17.6 229 28-281 12-280 (283)
86 4e6h_A MRNA 3'-END-processing 99.0 3.1E-07 1.1E-11 96.5 29.4 360 32-409 47-535 (679)
87 1qqe_A Vesicular transport pro 99.0 1.9E-08 6.3E-13 95.5 17.7 211 32-281 32-268 (292)
88 4ga2_A E3 SUMO-protein ligase 99.0 1.8E-09 6.1E-14 91.3 9.4 141 228-393 3-149 (150)
89 3mv2_B Coatomer subunit epsilo 99.0 6.2E-08 2.1E-12 90.7 20.2 181 169-379 85-288 (310)
90 2fo7_A Synthetic consensus TPR 98.9 3.2E-08 1.1E-12 80.9 15.0 129 254-407 2-132 (136)
91 2fo7_A Synthetic consensus TPR 98.9 4.8E-08 1.6E-12 79.8 14.8 127 152-282 3-132 (136)
92 3qky_A Outer membrane assembly 98.9 5.8E-08 2E-12 90.3 16.7 189 220-454 13-247 (261)
93 3mv2_B Coatomer subunit epsilo 98.9 1.1E-07 3.6E-12 89.1 18.1 236 131-407 25-282 (310)
94 1qqe_A Vesicular transport pro 98.9 2.7E-07 9.4E-12 87.3 20.8 213 19-255 39-273 (292)
95 2pzi_A Probable serine/threoni 98.8 9.5E-09 3.3E-13 109.5 11.3 169 196-393 402-583 (681)
96 2pzi_A Probable serine/threoni 98.8 1.5E-07 5.2E-12 100.2 19.7 190 161-380 402-609 (681)
97 3qky_A Outer membrane assembly 98.8 4E-08 1.4E-12 91.4 13.0 213 149-393 14-247 (261)
98 3urz_A Uncharacterized protein 98.8 1.4E-07 4.7E-12 84.5 15.1 178 152-378 6-191 (208)
99 3qou_A Protein YBBN; thioredox 98.8 3.3E-07 1.1E-11 86.5 18.5 158 186-404 118-281 (287)
100 2yhc_A BAMD, UPF0169 lipoprote 98.8 5.8E-07 2E-11 81.4 19.1 208 150-410 4-216 (225)
101 2r5s_A Uncharacterized protein 98.7 1.1E-07 3.9E-12 82.4 13.4 157 223-405 7-171 (176)
102 3gyz_A Chaperone protein IPGC; 98.7 1.3E-07 4.4E-12 79.6 12.5 102 307-408 30-134 (151)
103 3urz_A Uncharacterized protein 98.7 3E-07 1E-11 82.2 14.8 129 155-289 59-191 (208)
104 2vsy_A XCC0866; transferase, g 98.7 2.1E-07 7.1E-12 97.2 15.8 160 198-385 2-169 (568)
105 2vsy_A XCC0866; transferase, g 98.7 1.7E-07 5.7E-12 98.0 14.9 148 163-339 2-155 (568)
106 2r5s_A Uncharacterized protein 98.7 3.3E-07 1.1E-11 79.5 13.9 154 123-281 10-172 (176)
107 3rjv_A Putative SEL1 repeat pr 98.6 1.3E-06 4.6E-11 78.2 17.5 160 221-409 17-199 (212)
108 2uy1_A Cleavage stimulation fa 98.6 5.9E-06 2E-10 84.1 24.3 336 31-406 28-412 (493)
109 2c2l_A CHIP, carboxy terminus 98.6 1.1E-07 3.9E-12 89.4 9.6 192 185-407 4-199 (281)
110 1hh8_A P67PHOX, NCF-2, neutrop 98.6 3.2E-06 1.1E-10 75.5 18.8 132 222-378 6-155 (213)
111 3dra_A Protein farnesyltransfe 98.6 5.9E-06 2E-10 78.0 21.1 215 162-406 45-286 (306)
112 3qou_A Protein YBBN; thioredox 98.6 8.1E-07 2.8E-11 83.8 15.2 162 84-247 113-280 (287)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.8E-06 6E-11 77.2 15.9 126 123-250 10-149 (213)
114 4gco_A Protein STI-1; structur 98.6 7.3E-07 2.5E-11 72.5 12.0 107 255-386 15-123 (126)
115 4ga2_A E3 SUMO-protein ligase 98.6 1.8E-07 6.3E-12 78.7 8.6 133 100-236 9-148 (150)
116 2ifu_A Gamma-SNAP; membrane fu 98.6 3E-07 1E-11 87.7 11.0 186 192-399 43-253 (307)
117 2yhc_A BAMD, UPF0169 lipoprote 98.5 3E-06 1E-10 76.7 16.8 60 120-179 5-70 (225)
118 3rjv_A Putative SEL1 repeat pr 98.5 2.5E-06 8.4E-11 76.4 15.8 159 52-217 18-200 (212)
119 2ifu_A Gamma-SNAP; membrane fu 98.5 2.3E-06 8E-11 81.5 16.3 120 151-274 117-253 (307)
120 3dra_A Protein farnesyltransfe 98.5 2.3E-05 7.8E-10 73.9 22.6 215 31-281 47-286 (306)
121 1na0_A Designed protein CTPR3; 98.5 2.6E-06 8.8E-11 68.3 13.7 115 253-392 9-125 (125)
122 1a17_A Serine/threonine protei 98.5 2.7E-06 9.1E-11 72.4 13.9 127 254-405 14-144 (166)
123 4gco_A Protein STI-1; structur 98.5 1.7E-06 5.7E-11 70.3 11.6 95 312-406 13-109 (126)
124 2uy1_A Cleavage stimulation fa 98.4 2.2E-05 7.5E-10 79.8 22.1 333 3-372 31-412 (493)
125 2vyi_A SGTA protein; chaperone 98.4 3.6E-06 1.2E-10 68.0 13.2 119 252-395 11-131 (131)
126 2vgx_A Chaperone SYCD; alterna 98.4 2E-06 6.8E-11 72.1 11.5 97 311-407 20-118 (148)
127 3u3w_A Transcriptional activat 98.4 5.4E-06 1.9E-10 78.3 15.9 156 125-281 81-265 (293)
128 2lni_A Stress-induced-phosphop 98.4 3.1E-06 1E-10 68.8 12.4 117 252-393 15-133 (133)
129 2fbn_A 70 kDa peptidylprolyl i 98.4 5.4E-07 1.9E-11 79.7 7.6 172 226-407 8-186 (198)
130 3u3w_A Transcriptional activat 98.4 1.5E-05 5.2E-10 75.2 18.1 162 225-405 78-264 (293)
131 1wao_1 Serine/threonine protei 98.4 1.6E-06 5.4E-11 88.1 11.6 121 258-403 11-135 (477)
132 3gw4_A Uncharacterized protein 98.4 2.2E-06 7.6E-11 75.7 11.3 151 131-281 4-175 (203)
133 2xcb_A PCRH, regulatory protei 98.4 3.3E-06 1.1E-10 70.1 11.5 96 312-407 18-115 (142)
134 1p5q_A FKBP52, FK506-binding p 98.3 2.4E-06 8.2E-11 82.6 11.7 143 252-405 146-292 (336)
135 1a17_A Serine/threonine protei 98.3 9.8E-06 3.3E-10 68.8 14.1 128 150-281 13-145 (166)
136 2qfc_A PLCR protein; TPR, HTH, 98.3 1.7E-05 5.8E-10 74.9 16.9 166 221-405 74-264 (293)
137 4f3v_A ESX-1 secretion system 98.3 5.2E-06 1.8E-10 76.6 12.7 182 29-215 18-238 (282)
138 3upv_A Heat shock protein STI1 98.3 4.6E-06 1.6E-10 67.4 11.1 96 312-407 4-101 (126)
139 4f3v_A ESX-1 secretion system 98.3 5.9E-06 2E-10 76.2 12.8 183 64-249 18-235 (282)
140 3gw4_A Uncharacterized protein 98.3 1.6E-05 5.4E-10 70.1 14.8 153 234-406 4-175 (203)
141 2e2e_A Formate-dependent nitri 98.3 3.5E-06 1.2E-10 72.8 10.0 120 264-408 21-145 (177)
142 2vgx_A Chaperone SYCD; alterna 98.3 2.9E-06 9.9E-11 71.1 9.1 105 252-381 20-126 (148)
143 2qfc_A PLCR protein; TPR, HTH, 98.3 6.6E-05 2.2E-09 70.8 19.4 161 52-212 75-264 (293)
144 2kck_A TPR repeat; tetratricop 98.3 4.8E-06 1.7E-10 65.2 9.8 98 312-409 6-108 (112)
145 3q49_B STIP1 homology and U bo 98.3 9.6E-06 3.3E-10 66.4 11.9 98 310-407 7-106 (137)
146 2c2l_A CHIP, carboxy terminus 98.3 2.3E-06 7.7E-11 80.4 8.8 90 124-214 9-101 (281)
147 1na0_A Designed protein CTPR3; 98.2 1.5E-05 5.1E-10 63.6 12.6 93 152-248 11-103 (125)
148 3q7a_A Farnesyltransferase alp 98.2 9E-05 3.1E-09 70.7 19.7 225 153-406 57-330 (349)
149 1hxi_A PEX5, peroxisome target 98.2 3.2E-06 1.1E-10 68.1 8.4 94 314-407 19-114 (121)
150 3sz7_A HSC70 cochaperone (SGT) 98.2 7.6E-06 2.6E-10 69.7 11.1 97 311-407 10-108 (164)
151 1elw_A TPR1-domain of HOP; HOP 98.2 1.2E-05 3.9E-10 63.6 11.3 97 311-407 3-101 (118)
152 2e2e_A Formate-dependent nitri 98.2 7.5E-06 2.6E-10 70.7 10.8 116 162-281 22-143 (177)
153 2lni_A Stress-induced-phosphop 98.2 1.9E-05 6.6E-10 63.9 12.4 113 149-265 15-130 (133)
154 1elw_A TPR1-domain of HOP; HOP 98.2 3.1E-05 1.1E-09 61.0 13.1 111 253-388 4-116 (118)
155 3q7a_A Farnesyltransferase alp 98.2 0.00029 9.9E-09 67.2 21.7 227 20-282 57-331 (349)
156 2xcb_A PCRH, regulatory protei 98.2 8.8E-06 3E-10 67.5 10.0 116 244-384 6-126 (142)
157 3upv_A Heat shock protein STI1 98.2 1.7E-05 5.7E-10 64.1 11.3 110 254-388 5-122 (126)
158 2vyi_A SGTA protein; chaperone 98.2 2.2E-05 7.5E-10 63.2 11.9 115 150-268 12-129 (131)
159 3sz7_A HSC70 cochaperone (SGT) 98.2 2.1E-05 7.1E-10 67.0 12.1 109 252-385 10-120 (164)
160 3gyz_A Chaperone protein IPGC; 98.1 1.7E-05 5.8E-10 66.5 11.0 91 152-246 38-128 (151)
161 2dba_A Smooth muscle cell asso 98.1 2.1E-05 7.1E-10 65.2 11.3 98 310-407 26-128 (148)
162 4gcn_A Protein STI-1; structur 98.1 1.2E-05 4E-10 65.3 9.0 94 313-406 9-111 (127)
163 1p5q_A FKBP52, FK506-binding p 98.1 2.8E-05 9.5E-10 75.0 13.2 130 149-281 146-293 (336)
164 2dba_A Smooth muscle cell asso 98.1 6.7E-05 2.3E-09 62.0 13.6 116 251-388 26-143 (148)
165 3dss_A Geranylgeranyl transfer 98.1 0.00022 7.4E-09 67.7 18.3 97 267-389 207-320 (331)
166 3dss_A Geranylgeranyl transfer 98.1 0.00063 2.2E-08 64.5 21.3 216 161-406 40-303 (331)
167 2hr2_A Hypothetical protein; a 98.0 1.7E-05 5.9E-10 66.1 8.9 94 313-406 12-130 (159)
168 1wao_1 Serine/threonine protei 98.0 5E-05 1.7E-09 77.0 13.9 116 193-336 14-134 (477)
169 2kck_A TPR repeat; tetratricop 98.0 6.2E-05 2.1E-09 58.6 11.5 102 252-378 5-111 (112)
170 2fbn_A 70 kDa peptidylprolyl i 98.0 1.1E-05 3.7E-10 71.2 7.7 129 150-281 38-185 (198)
171 2xev_A YBGF; tetratricopeptide 98.0 3.5E-05 1.2E-09 62.2 10.1 93 315-407 5-105 (129)
172 4gcn_A Protein STI-1; structur 98.0 4.4E-05 1.5E-09 61.8 10.3 96 190-290 13-118 (127)
173 1elr_A TPR2A-domain of HOP; HO 98.0 3.5E-05 1.2E-09 62.1 9.2 96 312-407 4-108 (131)
174 3rkv_A Putative peptidylprolyl 97.9 3.7E-05 1.3E-09 65.2 9.1 96 312-407 11-126 (162)
175 3q49_B STIP1 homology and U bo 97.9 0.00015 5.3E-09 59.0 12.5 96 149-248 8-103 (137)
176 3k9i_A BH0479 protein; putativ 97.9 9E-06 3.1E-10 64.8 4.8 84 324-407 2-90 (117)
177 3n71_A Histone lysine methyltr 97.9 3.9E-05 1.3E-09 77.4 10.4 129 262-410 318-467 (490)
178 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 6E-05 2E-09 76.0 11.8 139 253-405 268-413 (457)
179 4b4t_Q 26S proteasome regulato 97.9 0.00011 3.7E-09 73.4 13.6 93 313-405 136-243 (434)
180 1elr_A TPR2A-domain of HOP; HO 97.9 6.1E-05 2.1E-09 60.6 9.4 110 254-389 5-123 (131)
181 2xev_A YBGF; tetratricopeptide 97.8 0.00027 9.4E-09 56.8 12.6 108 256-385 5-117 (129)
182 3ro3_A PINS homolog, G-protein 97.8 5.5E-05 1.9E-09 63.4 8.5 132 255-406 11-157 (164)
183 1hxi_A PEX5, peroxisome target 97.8 8.5E-05 2.9E-09 59.5 9.0 92 153-248 20-111 (121)
184 4b4t_Q 26S proteasome regulato 97.8 0.00052 1.8E-08 68.3 16.7 195 158-372 12-244 (434)
185 1ihg_A Cyclophilin 40; ppiase 97.8 0.0002 6.7E-09 69.9 12.5 135 255-399 225-362 (370)
186 3rkv_A Putative peptidylprolyl 97.7 0.0001 3.5E-09 62.4 8.9 118 255-385 13-139 (162)
187 3ro3_A PINS homolog, G-protein 97.7 9.4E-05 3.2E-09 61.9 8.4 130 151-281 10-157 (164)
188 1dce_A Protein (RAB geranylger 97.7 0.0015 5.2E-08 67.4 18.9 167 202-396 46-244 (567)
189 3k9i_A BH0479 protein; putativ 97.7 9.3E-05 3.2E-09 58.8 7.5 95 265-381 2-98 (117)
190 2l6j_A TPR repeat-containing p 97.7 0.00011 3.9E-09 57.2 7.7 91 311-401 3-101 (111)
191 2if4_A ATFKBP42; FKBP-like, al 97.7 9.1E-05 3.1E-09 71.4 8.1 140 254-407 180-328 (338)
192 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00031 1E-08 70.8 12.2 127 150-281 268-414 (457)
193 1na3_A Designed protein CTPR2; 97.6 0.00031 1.1E-08 52.3 9.2 82 311-392 8-91 (91)
194 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00023 8E-09 68.5 10.4 126 151-281 180-327 (338)
195 3ma5_A Tetratricopeptide repea 97.6 0.00027 9.1E-09 54.3 8.6 64 343-406 6-69 (100)
196 1ihg_A Cyclophilin 40; ppiase 97.5 0.00048 1.6E-08 67.2 10.6 89 150-242 273-361 (370)
197 2kat_A Uncharacterized protein 97.4 0.0006 2E-08 53.7 8.3 77 330-406 3-81 (115)
198 2l6j_A TPR repeat-containing p 97.3 0.00022 7.6E-09 55.5 5.0 97 16-115 3-105 (111)
199 3n71_A Histone lysine methyltr 97.3 0.00038 1.3E-08 70.2 7.8 116 320-454 317-450 (490)
200 1zu2_A Mitochondrial import re 97.3 0.00015 5.3E-09 60.2 3.7 85 323-407 13-120 (158)
201 3bee_A Putative YFRE protein; 97.3 0.0015 5E-08 49.3 8.8 69 342-410 4-75 (93)
202 2hr2_A Hypothetical protein; a 97.2 0.003 1E-07 52.5 11.0 93 152-247 13-127 (159)
203 3qwp_A SET and MYND domain-con 97.2 0.00055 1.9E-08 68.0 7.7 117 318-453 293-427 (429)
204 1klx_A Cysteine rich protein B 97.1 0.0078 2.7E-07 49.1 12.3 111 164-284 9-128 (138)
205 1na3_A Designed protein CTPR2; 97.1 0.0042 1.4E-07 45.9 9.7 81 150-234 9-89 (91)
206 1dce_A Protein (RAB geranylger 97.0 0.012 4.2E-07 60.6 15.2 180 33-240 45-244 (567)
207 3qww_A SET and MYND domain-con 96.9 0.0048 1.7E-07 61.1 11.2 96 265-380 310-423 (433)
208 3qww_A SET and MYND domain-con 96.9 0.0012 4.3E-08 65.3 6.8 83 324-406 310-410 (433)
209 3mkq_A Coatomer beta'-subunit; 96.9 0.015 5.3E-07 62.9 15.9 156 127-339 607-763 (814)
210 2kat_A Uncharacterized protein 96.9 0.0033 1.1E-07 49.2 7.9 76 169-248 4-79 (115)
211 3qwp_A SET and MYND domain-con 96.9 0.007 2.4E-07 60.0 12.0 104 259-382 293-414 (429)
212 3lvg_A Clathrin heavy chain 1; 96.9 5.7E-05 2E-09 73.3 -3.1 237 17-274 54-325 (624)
213 1zu2_A Mitochondrial import re 96.7 0.0016 5.4E-08 54.1 5.0 110 162-297 14-133 (158)
214 1klx_A Cysteine rich protein B 96.7 0.0049 1.7E-07 50.3 8.0 114 266-410 8-129 (138)
215 3ma5_A Tetratricopeptide repea 96.6 0.0046 1.6E-07 47.1 6.9 87 15-102 5-91 (100)
216 2kc7_A BFR218_protein; tetratr 96.4 0.018 6E-07 43.4 9.1 64 318-381 6-72 (99)
217 2kc7_A BFR218_protein; tetratr 96.4 0.008 2.7E-07 45.4 6.8 58 351-408 7-65 (99)
218 3ly7_A Transcriptional activat 96.3 0.2 6.7E-06 47.8 16.8 143 250-408 191-340 (372)
219 3ly7_A Transcriptional activat 96.2 0.067 2.3E-06 51.0 13.3 141 147-292 191-347 (372)
220 1wy6_A Hypothetical protein ST 96.2 0.24 8.2E-06 39.1 13.7 135 263-410 17-157 (172)
221 1pc2_A Mitochondria fission pr 95.9 0.045 1.6E-06 44.8 9.2 92 341-459 29-125 (152)
222 3mkq_B Coatomer subunit alpha; 95.5 0.86 2.9E-05 38.2 15.7 127 195-370 15-141 (177)
223 3mkq_A Coatomer beta'-subunit; 95.3 0.4 1.4E-05 51.6 17.1 131 92-249 633-763 (814)
224 3u64_A Protein TP_0956; tetrat 95.3 0.049 1.7E-06 49.8 8.1 87 328-414 179-276 (301)
225 3bee_A Putative YFRE protein; 95.2 0.095 3.2E-06 39.1 8.3 79 309-388 3-86 (93)
226 2v5f_A Prolyl 4-hydroxylase su 94.9 0.17 5.9E-06 38.5 9.1 74 311-384 4-86 (104)
227 3mkq_B Coatomer subunit alpha; 94.6 0.68 2.3E-05 38.9 12.6 129 229-404 12-141 (177)
228 1wy6_A Hypothetical protein ST 94.2 1.6 5.6E-05 34.5 15.2 144 55-217 8-157 (172)
229 3lvg_A Clathrin heavy chain 1; 93.7 4.2E-06 1.5E-10 81.0 -23.5 226 151-401 55-285 (624)
230 1nzn_A CGI-135 protein, fissio 93.2 0.66 2.3E-05 36.4 9.3 104 327-457 16-126 (126)
231 2v5f_A Prolyl 4-hydroxylase su 93.1 0.71 2.4E-05 34.9 9.4 68 150-217 5-78 (104)
232 2wpv_A GET4, UPF0363 protein Y 92.9 5.9 0.0002 36.7 22.2 145 100-266 25-178 (312)
233 1pc2_A Mitochondria fission pr 92.7 0.69 2.4E-05 37.8 9.1 79 168-249 16-98 (152)
234 4h7y_A Dual specificity protei 92.3 0.87 3E-05 36.8 8.8 100 12-114 8-120 (161)
235 4h7y_A Dual specificity protei 92.1 0.49 1.7E-05 38.3 7.2 100 311-410 12-126 (161)
236 3lpz_A GET4 (YOR164C homolog); 91.5 8.9 0.0003 35.8 23.3 133 122-265 38-179 (336)
237 4gns_B Protein CSD3, chitin bi 90.2 0.82 2.8E-05 48.1 8.8 54 352-405 345-398 (754)
238 3ltj_A Alpharep-4; protein eng 90.1 8 0.00027 32.9 17.0 121 87-212 58-178 (201)
239 2uwj_G Type III export protein 90.1 4.4 0.00015 29.9 9.8 60 127-189 47-106 (115)
240 2p58_C Putative type III secre 89.9 4.7 0.00016 29.8 9.9 59 127-188 48-106 (116)
241 1y8m_A FIS1; mitochondria, unk 89.4 7.1 0.00024 31.2 13.1 91 341-458 36-130 (144)
242 3u64_A Protein TP_0956; tetrat 89.4 1.3 4.5E-05 40.5 8.3 80 202-282 180-269 (301)
243 2ff4_A Probable regulatory pro 88.8 0.91 3.1E-05 44.0 7.5 68 347-414 174-246 (388)
244 1v54_E Cytochrome C oxidase po 88.7 2 7E-05 31.9 7.3 63 32-96 25-87 (109)
245 4fhn_B Nucleoporin NUP120; pro 88.5 14 0.00047 41.5 17.8 190 190-406 817-1049(1139)
246 3ltm_A Alpha-REP4; protein eng 87.6 13 0.00043 31.9 17.5 186 34-237 18-203 (211)
247 4gns_B Protein CSD3, chitin bi 86.5 3.9 0.00013 43.1 11.0 124 189-339 252-398 (754)
248 1v54_E Cytochrome C oxidase po 84.8 5.2 0.00018 29.7 7.7 50 337-386 38-87 (109)
249 3txn_A 26S proteasome regulato 84.8 29 0.00098 33.3 19.4 287 91-410 22-346 (394)
250 1qsa_A Protein (soluble lytic 82.8 46 0.0016 34.2 26.5 105 267-372 228-347 (618)
251 4b4t_P 26S proteasome regulato 82.8 38 0.0013 33.2 16.9 93 314-406 139-246 (445)
252 2y69_E Cytochrome C oxidase su 82.0 5.7 0.0002 31.3 7.3 56 38-95 74-129 (152)
253 3o48_A Mitochondria fission 1 81.6 11 0.00038 29.7 9.0 66 341-406 37-106 (134)
254 3ffl_A Anaphase-promoting comp 80.6 8.4 0.00029 31.7 8.4 62 20-81 23-92 (167)
255 4b4t_P 26S proteasome regulato 80.4 46 0.0016 32.6 17.0 54 226-279 141-203 (445)
256 3lpz_A GET4 (YOR164C homolog); 80.0 39 0.0013 31.5 20.4 157 223-406 36-215 (336)
257 4b4t_R RPN7, 26S proteasome re 78.8 50 0.0017 32.1 16.0 62 152-213 133-196 (429)
258 2ff4_A Probable regulatory pro 78.7 5.6 0.00019 38.4 8.1 68 223-290 172-247 (388)
259 1wdy_A 2-5A-dependent ribonucl 78.0 26 0.0009 31.2 12.4 246 22-288 7-281 (285)
260 1nzn_A CGI-135 protein, fissio 77.8 23 0.00078 27.6 10.7 83 201-288 17-107 (126)
261 3esl_A Checkpoint serine/threo 77.6 21 0.00072 30.4 10.2 103 329-458 61-169 (202)
262 2p58_C Putative type III secre 77.4 19 0.00067 26.6 8.8 78 66-148 21-98 (116)
263 3ltm_A Alpha-REP4; protein eng 77.2 33 0.0011 29.1 18.6 141 87-237 32-172 (211)
264 3ltj_A Alpharep-4; protein eng 75.6 35 0.0012 28.7 16.7 81 85-165 25-105 (201)
265 3ffl_A Anaphase-promoting comp 75.6 17 0.00057 30.0 8.7 29 221-249 121-149 (167)
266 2y69_E Cytochrome C oxidase su 74.9 15 0.0005 29.0 7.7 50 337-386 81-130 (152)
267 4fhn_B Nucleoporin NUP120; pro 74.9 64 0.0022 36.0 16.4 89 186-274 900-992 (1139)
268 4ady_A RPN2, 26S proteasome re 73.7 1E+02 0.0036 33.2 18.5 167 129-303 500-676 (963)
269 2uwj_G Type III export protein 70.0 31 0.0011 25.5 9.1 78 200-283 21-98 (115)
270 2wpv_A GET4, UPF0363 protein Y 69.4 70 0.0024 29.5 20.5 158 222-405 33-215 (312)
271 1y8m_A FIS1; mitochondria, unk 69.0 34 0.0012 27.3 8.8 70 310-379 37-112 (144)
272 4a1g_A Mitotic checkpoint seri 68.8 40 0.0014 27.2 9.4 80 329-411 52-134 (152)
273 1zbp_A Hypothetical protein VP 64.4 15 0.0005 33.0 6.6 59 320-378 5-65 (273)
274 3o48_A Mitochondria fission 1 64.1 51 0.0017 25.9 8.9 68 312-379 40-113 (134)
275 2nsz_A Programmed cell death p 62.2 28 0.00094 27.3 7.3 64 123-186 11-79 (129)
276 2wvi_A Mitotic checkpoint seri 62.2 54 0.0019 26.9 9.2 80 329-411 47-129 (164)
277 1wdy_A 2-5A-dependent ribonucl 61.8 84 0.0029 27.6 14.1 59 229-288 152-214 (285)
278 3txn_A 26S proteasome regulato 60.2 1.2E+02 0.0042 29.0 15.0 96 258-372 104-209 (394)
279 1zbp_A Hypothetical protein VP 58.2 13 0.00045 33.3 5.2 54 194-250 6-59 (273)
280 3esl_A Checkpoint serine/threo 55.8 95 0.0033 26.4 10.3 76 239-338 61-141 (202)
281 2ion_A PDCD4, programmed cell 53.8 26 0.0009 28.4 5.9 63 123-185 13-80 (152)
282 1n11_A Ankyrin; clathrin, BAND 53.2 1.6E+02 0.0054 28.2 13.5 335 27-412 21-371 (437)
283 3eu9_A Huntingtin-interacting 52.0 27 0.00094 30.1 6.5 88 16-113 6-98 (240)
284 4b4t_R RPN7, 26S proteasome re 47.0 58 0.002 31.6 8.4 34 374-409 343-376 (429)
285 3jxi_A Vanilloid receptor-rela 46.3 41 0.0014 29.5 6.8 118 25-143 10-161 (260)
286 4b4t_S RPN3, 26S proteasome re 46.1 2.4E+02 0.008 28.1 13.7 173 221-410 230-432 (523)
287 2l0z_A Glycoprotein G2; zinc-b 45.8 6.6 0.00022 23.3 0.8 13 535-547 16-29 (42)
288 1qsa_A Protein (soluble lytic 45.0 2.7E+02 0.0092 28.5 33.9 237 164-412 228-484 (618)
289 3b7b_A Euchromatic histone-lys 43.8 1.4E+02 0.0049 25.3 9.9 53 228-281 180-235 (237)
290 2qx5_A Nucleoporin NIC96; mRNA 42.6 3E+02 0.01 28.3 17.5 85 319-404 450-564 (661)
291 3ygs_P Procaspase 9; apoptosis 42.5 63 0.0022 23.7 6.0 40 236-275 51-90 (97)
292 4aez_C MAD3, mitotic spindle c 40.7 1.2E+02 0.0041 26.3 8.2 80 329-411 101-183 (223)
293 1k1a_A B-cell lymphoma 3-encod 40.3 1.3E+02 0.0046 25.5 9.2 23 28-50 17-39 (241)
294 4ady_A RPN2, 26S proteasome re 39.7 4E+02 0.014 28.9 27.9 153 128-281 383-552 (963)
295 4a1g_A Mitotic checkpoint seri 39.6 57 0.0019 26.4 5.7 50 169-218 84-134 (152)
296 2nsz_A Programmed cell death p 38.6 1E+02 0.0035 24.0 7.0 60 225-284 10-74 (129)
297 3kea_A K1L; tropism, ANK repea 38.3 77 0.0026 28.4 7.4 211 163-413 9-223 (285)
298 3bqo_A Telomeric repeat-bindin 38.2 1.7E+02 0.0059 24.7 8.4 62 328-389 94-162 (211)
299 3ygs_P Procaspase 9; apoptosis 38.2 25 0.00085 25.9 3.2 63 8-74 26-90 (97)
300 2pnn_A Transient receptor pote 37.4 1.2E+02 0.004 26.8 8.5 127 15-143 9-169 (273)
301 2pk8_A Uncharacterized protein 36.2 20 0.00069 25.8 2.2 47 436-490 13-59 (103)
302 1k1a_A B-cell lymphoma 3-encod 35.9 2E+02 0.0068 24.3 10.0 46 324-369 125-172 (241)
303 2k0q_A Putative uncharacterize 35.7 13 0.00045 25.1 1.1 22 524-545 8-29 (74)
304 3mv2_A Coatomer subunit alpha; 35.1 2.7E+02 0.0093 25.6 12.4 68 327-408 185-257 (325)
305 4gq2_M Nucleoporin NUP120; bet 35.0 2.7E+02 0.0091 30.3 12.0 33 346-378 899-932 (950)
306 2p1h_A APAF-1, apoptotic prote 33.9 1.3E+02 0.0043 21.7 6.5 63 205-273 25-87 (94)
307 1n11_A Ankyrin; clathrin, BAND 31.4 2.6E+02 0.0088 26.6 10.4 304 59-411 18-337 (437)
308 2ion_A PDCD4, programmed cell 31.3 88 0.003 25.2 5.7 60 225-284 12-76 (152)
309 2d2s_A Exocyst complex compone 31.3 1.9E+02 0.0065 25.2 8.3 88 318-407 24-120 (235)
310 2d2s_A Exocyst complex compone 31.1 1.7E+02 0.0057 25.6 7.9 88 22-113 23-116 (235)
311 2hgo_A CASSIICOLIN; toxin, dis 31.0 9.8 0.00034 19.4 -0.1 13 536-548 8-22 (27)
312 2wvi_A Mitotic checkpoint seri 30.7 1E+02 0.0035 25.2 6.0 50 169-218 79-129 (164)
313 2ko4_A Mediator of RNA polymer 30.2 79 0.0027 22.0 4.2 39 6-44 23-63 (81)
314 3b7b_A Euchromatic histone-lys 30.1 1.1E+02 0.0038 26.0 6.8 148 229-406 81-235 (237)
315 3hra_A Ankyrin repeat family p 29.5 1.9E+02 0.0065 23.7 8.1 77 28-113 13-94 (201)
316 1ug3_A EIF4GI, eukaryotic prot 28.7 1.2E+02 0.0041 28.3 7.0 25 93-117 16-40 (339)
317 2fe3_A Peroxide operon regulat 28.5 1.3E+02 0.0045 23.8 6.3 60 175-237 12-71 (145)
318 2zu6_B Programmed cell death p 27.9 3.5E+02 0.012 24.7 14.3 63 225-287 169-236 (307)
319 3kea_A K1L; tropism, ANK repea 27.9 1.8E+02 0.0062 25.9 8.0 15 99-113 103-117 (285)
320 3qye_A TBC1 domain family memb 26.9 3.1E+02 0.011 25.1 9.6 140 21-165 153-309 (331)
321 3ljn_A Hypothetical protein; a 26.6 2.6E+02 0.0089 25.7 9.2 56 228-288 176-239 (364)
322 3i5p_A Nucleoporin NUP170; hel 26.4 4.9E+02 0.017 25.9 11.9 68 342-409 176-248 (525)
323 4aez_C MAD3, mitotic spindle c 26.4 77 0.0026 27.5 4.7 45 203-248 132-176 (223)
324 2zu6_B Programmed cell death p 26.1 1.1E+02 0.0039 28.0 6.1 64 122-185 169-237 (307)
325 4gq2_M Nucleoporin NUP120; bet 25.8 5.5E+02 0.019 27.8 12.5 50 187-236 899-950 (950)
326 4b4t_S RPN3, 26S proteasome re 25.8 1.3E+02 0.0046 29.8 6.8 66 312-377 231-303 (523)
327 3hra_A Ankyrin repeat family p 25.2 2.8E+02 0.0094 22.6 10.3 153 231-412 11-172 (201)
328 2fe3_A Peroxide operon regulat 24.2 1.3E+02 0.0045 23.8 5.6 62 41-104 11-72 (145)
329 3eyy_A Putative iron uptake re 24.2 1.5E+02 0.0051 23.5 5.9 35 68-103 33-67 (145)
330 1oyz_A Hypothetical protein YI 24.2 3.6E+02 0.012 23.6 20.9 241 7-279 27-277 (280)
331 2xig_A Ferric uptake regulatio 24.0 2.1E+02 0.0071 22.8 6.7 61 175-238 17-77 (150)
332 2lo3_A SAGA-associated factor 23.9 23 0.00079 21.2 0.6 13 504-516 16-28 (44)
333 2o03_A Probable zinc uptake re 23.7 1.3E+02 0.0045 23.3 5.3 45 22-66 15-59 (131)
334 2r9g_A AAA ATPase, central reg 23.7 3E+02 0.01 23.3 7.6 46 153-199 14-62 (204)
335 1ug3_A EIF4GI, eukaryotic prot 22.7 3.3E+02 0.011 25.2 8.8 62 122-183 14-79 (339)
336 3aji_A 26S proteasome non-ATPa 22.5 3E+02 0.01 23.0 8.2 13 161-173 14-26 (231)
337 2yru_A Steroid receptor RNA ac 22.2 1.4E+02 0.0049 22.8 5.0 45 171-215 47-91 (118)
338 4ets_A Ferric uptake regulatio 21.1 1E+02 0.0035 25.1 4.3 70 33-104 13-85 (162)
339 2xig_A Ferric uptake regulatio 21.0 1.3E+02 0.0043 24.1 4.8 62 41-104 16-77 (150)
340 3mwm_A ZUR, putative metal upt 21.0 1.2E+02 0.004 23.9 4.6 42 23-64 19-60 (139)
341 2p1h_A APAF-1, apoptotic prote 20.7 2.4E+02 0.0081 20.1 6.4 38 101-138 49-86 (94)
342 3qye_A TBC1 domain family memb 20.6 4.9E+02 0.017 23.8 10.7 94 171-266 209-307 (331)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-36 Score=316.90 Aligned_cols=395 Identities=10% Similarity=-0.028 Sum_probs=339.3
Q ss_pred cchHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC
Q 038673 3 SFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLG 82 (548)
Q Consensus 3 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 82 (548)
..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..+++.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 145 (597)
T 2xpi_A 70 LKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-- 145 (597)
T ss_dssp ------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--
Confidence 4567888999989999999999999999999999999999985 568889999999999999999999999998765
Q ss_pred CCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCC-------------------CeehHHHHHHHHHhCCChHHHHHHHc
Q 038673 83 GFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPER-------------------DVVSWTELIVAYANNGDMESAGGLFN 143 (548)
Q Consensus 83 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~f~ 143 (548)
.+++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++|.++|+
T Consensus 146 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 224 (597)
T 2xpi_A 146 -YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYK 224 (597)
T ss_dssp -GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4688999999999999999999999999965433 47899999999999999999988876
Q ss_pred cCC------------------------------------------------------------------------C--CC
Q 038673 144 ELP------------------------------------------------------------------------L--KD 149 (548)
Q Consensus 144 ~m~------------------------------------------------------------------------~--~~ 149 (548)
+|. . ++
T Consensus 225 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 304 (597)
T 2xpi_A 225 EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS 304 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGC
T ss_pred HHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCch
Confidence 652 1 46
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++...|++++|.++++.+.+... .+..+++.++
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~ 380 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP---EKAVTWLAVG 380 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc---ccHHHHHHHH
Confidence 6788889999999999999999999998765 44677889999999999999999999999987654 3889999999
Q ss_pred HHHhcCCCHHHHHHHHhcCC---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC---
Q 038673 230 DMYSKCGSIDDAYRIFVGMK---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL--- 303 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~--- 303 (548)
.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+. .+++..++..+..+|.+.|.
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999876 356789999999999999999999999999985 34477899999999999987
Q ss_pred ------ccC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--hhHHHHHHHHHHhcCCHHHHHHHH
Q 038673 304 ------KCY-GVSPSTDHYACMVDLLGRAGCLEEALKMVEKM-------PVEPN--GGVWGALLGACQIHRNPEIAQIAA 367 (548)
Q Consensus 304 ------~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~ 367 (548)
... ..+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..+..+|.+.|++++|...+
T Consensus 460 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 111 12346889999999999999999999999988 34677 789999999999999999999999
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 368 NHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 368 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+++.+..|+++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-33 Score=295.62 Aligned_cols=381 Identities=7% Similarity=-0.024 Sum_probs=332.6
Q ss_pred CcchHHHhccC--CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH-C--------------CCCCChhhHHHHHHHhhc
Q 038673 2 DSFPRLVFEQV--KYKNPFLWTALIRGYILQGHLKDSISLYCSMRR-E--------------GIGPVSFTLSALFKACTE 64 (548)
Q Consensus 2 ~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~--------------g~~p~~~~~~~ll~a~~~ 64 (548)
+++|..+|+.+ .++++.+|+.++.+|.+.|++++|+++|+++.. . |.+++..+|+.++.++.+
T Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 133 YARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 56788999988 467889999999999999999999999985322 1 223457899999999999
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCChhHHHHH--------------------------------------HHHHHHcCChHH
Q 038673 65 VLDVSLGQQIHAQTILLGGFTSDLYVGNTM--------------------------------------IGMYVKCGFLGC 106 (548)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------i~~~~~~g~~~~ 106 (548)
.|++++|.++|+.+++.+ +.+...+..+ +.+|.+.|++++
T Consensus 213 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 999999999999999876 4444443333 556778899999
Q ss_pred HHHHHccCCC--CCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC
Q 038673 107 SRKVFDEMPE--RDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV 181 (548)
Q Consensus 107 A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 181 (548)
|.++|+++.+ ++..+|+.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|..+|+++.+..
T Consensus 291 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp HHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 9999999988 789999999999999999999999999985 4478899999999999999999999999998653
Q ss_pred CCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC---CCChhhhHH
Q 038673 182 ETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK---QRNVFSYSS 258 (548)
Q Consensus 182 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~ 258 (548)
+.+..++..++..|.+.|++++|.++|+.+.+.... +..+|+.++.+|.+.|++++|.++|+++. ..+..+|+.
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 446 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ---FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF 446 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 557889999999999999999999999999987644 88899999999999999999999999876 357889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC---------------ccCCCCcC--HHHHHHHHHH
Q 038673 259 MILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL---------------KCYGVSPS--TDHYACMVDL 321 (548)
Q Consensus 259 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------------~~~~~~p~--~~~~~~li~~ 321 (548)
++.+|.+.|++++|+++|++|.+. .+.+..+|..+...+.+.|. .+.+..|+ ..+|..++.+
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYAL-FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 999999999999999999999985 34468899999999999996 22366787 7899999999
Q ss_pred HHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 322 LGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
|.+.|++++|.++++++. ..| +..+|..+..+|...|++++|...++++++++|+++..+..|+++|.
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999874 345 68999999999999999999999999999999999999999988774
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.8e-26 Score=228.24 Aligned_cols=351 Identities=13% Similarity=0.053 Sum_probs=305.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 038673 23 LIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC 101 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 101 (548)
+...+.+.|++++|++.|..+.+. .| +...+..+...+...|+++.|...++..++.. +.+..++..+...|.+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHC
Confidence 345677889999999999998875 45 44566667777888999999999999999875 77889999999999999
Q ss_pred CChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHH
Q 038673 102 GFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFER 175 (548)
Q Consensus 102 g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 175 (548)
|++++|...|+++.+ | +..+|..+..++.+.|++++|.+.|+++. +.+...+..+...+...|++++|...|++
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998864 4 45579999999999999999999998875 33566788888999999999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CC
Q 038673 176 MQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RN 252 (548)
Q Consensus 176 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~ 252 (548)
+.+.. +.+..++..+...+...|++++|...++.+.+..+. +...+..+...|...|++++|...|++..+ .+
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 236 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence 98763 345778899999999999999999999999987754 888999999999999999999999987753 45
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
..+|..+...|...|++++|++.|+++.+ ..|+ +..+|..+...|.+.|++++|.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~-----------------------~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPH-----------------------FPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSS-----------------------CHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC-----------------------CHHHHHHHHHHHHHcCCHHHHH
Confidence 78899999999999999999999999988 3444 3456888999999999999999
Q ss_pred HHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 333 KMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 333 ~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
+.|+++. ..++..+|..+...+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 292 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999884 3346889999999999999999999999999999999999999999999999999999999999875
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=5e-26 Score=227.35 Aligned_cols=361 Identities=14% Similarity=0.069 Sum_probs=314.1
Q ss_pred CCcchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHH
Q 038673 1 MDSFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQ 77 (548)
Q Consensus 1 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~ 77 (548)
++++|.+.|+.+. +.+...+..+...+.+.|++++|...++..... .+.+..+|..+..++...|++++|...++.
T Consensus 14 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3567888876653 335567778888899999999999999998874 345778999999999999999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CC-eehHHHHHHHHHhCCChHHHHHHHccCC---CCChh
Q 038673 78 TILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RD-VVSWTELIVAYANNGDMESAGGLFNELP---LKDKV 151 (548)
Q Consensus 78 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~ 151 (548)
+++.. +.+..++..+..+|.+.|++++|.+.|+++.+ |+ ...+..+...+...|++++|.+.|+++. +.+..
T Consensus 93 al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 170 (388)
T 1w3b_A 93 ALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170 (388)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 99975 66778899999999999999999999998864 54 4567788889999999999999999875 34678
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
+|+.+...|.+.|++++|+..|+++.+.+ +.+...+..+...+...|++++|...+..+.+..+. +..++..+...
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~ 246 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN---HAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---CHHHHHHHHHH
Confidence 99999999999999999999999998864 345677888999999999999999999999887644 88999999999
Q ss_pred HhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCC
Q 038673 232 YSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGV 308 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 308 (548)
|.+.|++++|.+.|+++.+ .+..+|..+...+...|++++|++.|+++.+. .|+
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~--------------------- 303 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPT--------------------- 303 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTT---------------------
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccc---------------------
Confidence 9999999999999998763 35678999999999999999999999999884 333
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 309 SPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
+..++..+...+.+.|++++|.+.++++. ..|+ ..++..+..++...|++++|...+++++++.|+++..|..++.
T Consensus 304 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 304 --HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp --CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence 45678889999999999999999999885 4565 7789999999999999999999999999999999999999999
Q ss_pred HHHHcCC
Q 038673 387 IYASAGM 393 (548)
Q Consensus 387 ~~~~~g~ 393 (548)
++...|+
T Consensus 382 ~~~~~~~ 388 (388)
T 1w3b_A 382 TLKEMQD 388 (388)
T ss_dssp HHHHTCC
T ss_pred HHHHccC
Confidence 8887663
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.2e-28 Score=247.75 Aligned_cols=213 Identities=13% Similarity=0.048 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHc
Q 038673 34 KDSISLYCSMRREGIGPVS-FTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFD 112 (548)
Q Consensus 34 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 112 (548)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.| +.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~----- 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATES----- 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSS-----
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhh-----
Confidence 4456677788877776544 458888999999999999999999999998 999999999999988876653211
Q ss_pred cCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 038673 113 EMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVI 192 (548)
Q Consensus 113 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 192 (548)
.+.+..++|.++|++|...|+.||..||+++|
T Consensus 81 ------------------------------------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 81 ------------------------------------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp ------------------------------------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ------------------------------------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 12234567788888888888888888888888
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC----CCChhhhHHHHHHHHhcCC
Q 038673 193 SACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK----QRNVFSYSSMILGFAMHGR 268 (548)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 268 (548)
.+|++.|++++|.+++++|.+.|+.| +..+|++||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQP--RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC--ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888885 88888888888888888888888888886 4788899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcC
Q 038673 269 AHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302 (548)
Q Consensus 269 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 302 (548)
.++|.++|++|.+.|+.|+..||+.++..++..+
T Consensus 191 ~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 191 ADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999988887643
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.8e-27 Score=243.01 Aligned_cols=202 Identities=12% Similarity=0.052 Sum_probs=166.5
Q ss_pred chHHHhccCCCC-----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC---------cH
Q 038673 4 FPRLVFEQVKYK-----NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD---------VS 69 (548)
Q Consensus 4 ~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~---------~~ 69 (548)
.+..++..+.++ +...++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|+..+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345556655533 2246899999999999999999999999999999999999999999987654 57
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCC
Q 038673 70 LGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKD 149 (548)
Q Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 149 (548)
.|.++|+.|.+.| +.||..+||+||.+|++.|++++|.++|++|.+. -..||
T Consensus 88 ~A~~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---------------------------g~~Pd 139 (501)
T 4g26_A 88 RGFDIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF---------------------------GIQPR 139 (501)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---------------------------TCCCC
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------------------CCCCc
Confidence 8999999999999 9999999999999999999999999998877431 13578
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.+..| +..||+.++
T Consensus 140 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p--s~~T~~~l~ 217 (501)
T 4g26_A 140 LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV--SKSTFDMIE 217 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB--CHHHHHHHH
T ss_pred cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc--CHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888885 888888888
Q ss_pred HHHhcC
Q 038673 230 DMYSKC 235 (548)
Q Consensus 230 ~~y~~~ 235 (548)
..|+..
T Consensus 218 ~~F~s~ 223 (501)
T 4g26_A 218 EWFKSE 223 (501)
T ss_dssp HHHHSH
T ss_pred HHHhcC
Confidence 888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.8e-23 Score=213.32 Aligned_cols=357 Identities=11% Similarity=-0.049 Sum_probs=292.7
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
...|......+.+.|++++|+..|+++.... ||..+|..+..++...|+++.|...++.+++.. +.+..++..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHH
Confidence 3456777788889999999999999998854 788889999999999999999999999998876 677888999999
Q ss_pred HHHHcCChHHHHHHHccCCC--C-C-------------------------------------------------------
Q 038673 97 MYVKCGFLGCSRKVFDEMPE--R-D------------------------------------------------------- 118 (548)
Q Consensus 97 ~~~~~g~~~~A~~~~~~m~~--~-~------------------------------------------------------- 118 (548)
+|.+.|++++|...|+++.+ | +
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999988877632 1 1
Q ss_pred ------------------------eehHHHHHHHHHh---CCChHHHHHHHccCCC----------------C-ChhHHH
Q 038673 119 ------------------------VVSWTELIVAYAN---NGDMESAGGLFNELPL----------------K-DKVAWT 154 (548)
Q Consensus 119 ------------------------~~~~~~li~~~~~---~g~~~~A~~~f~~m~~----------------~-~~~~~~ 154 (548)
...+......+.. .|++++|...|+++.. + +..+|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1122222233333 7899999998877644 1 355788
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
.+...+...|++++|+..|+++.... |+...+..+...+...|++++|...++.+.+.... +..++..+...|..
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN---NSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT---CTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC---CHHHHHHHHHHHHH
Confidence 88889999999999999999988764 34777888888899999999999999998887644 77788899999999
Q ss_pred CCCHHHHHHHHhcCC---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcC
Q 038673 235 CGSIDDAYRIFVGMK---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPS 311 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~ 311 (548)
.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+. .|+ +
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------~ 371 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPE-----------------------A 371 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STT-----------------------C
T ss_pred hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--ccc-----------------------C
Confidence 999999999998765 345678888888999999999999999998873 333 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCchh
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP----VEPN----GGVWGALLGACQI---HRNPEIAQIAANHLFELEPDKIGN 380 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~ 380 (548)
...+..+...|.+.|++++|.+.++++. ..|+ ...|..+...+.. .|+++.|...++++++..|+++.+
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 4568888999999999999999998873 2222 3388888899999 999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 381 YIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 381 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+..++.+|.+.|++++|.+.+++..+.
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999998764
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=9e-23 Score=207.78 Aligned_cols=325 Identities=12% Similarity=0.013 Sum_probs=251.0
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
++..|..+...+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|...++.+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 4567888899999999999999999998875 23467788888888999999999999999999886 66788888999
Q ss_pred HHHHHcCChHHHHHHHccCCCCC---e---ehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHH
Q 038673 96 GMYVKCGFLGCSRKVFDEMPERD---V---VSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREA 169 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~m~~~~---~---~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 169 (548)
.+|.+.|++++|.+.|+++.+.+ . .+|..++..+.. ..+..+...+.+.|++++|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988876522 2 455555444221 1223344456677777788
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 170 IEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 170 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
+..|+++.... +.+...+..+..++...|++++|...++.+.+.... +..++..+...|.+.|++++|...|+++.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND---NTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 87777776643 345666777777777778888888887777766533 67777778888888888888888877765
Q ss_pred C--C-ChhhhHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHH
Q 038673 250 Q--R-NVFSYSSM------------ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDH 314 (548)
Q Consensus 250 ~--~-~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~ 314 (548)
+ | +...+..+ ...+...|++++|+..|+++.+ +.|+...+ ...+
T Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~-------------------~~~~ 297 (450)
T 2y4t_A 239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEY-------------------TVRS 297 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHH-------------------HHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHH-------------------HHHH
Confidence 2 2 33344444 7889999999999999999988 44553221 1246
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
|..+..++.+.|++++|.+.++++. ..| +...|..+..+|...|++++|...+++++++.|+++..+..+..+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 8889999999999999999999874 445 588999999999999999999999999999999999999888843
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.9e-21 Score=198.00 Aligned_cols=305 Identities=11% Similarity=0.062 Sum_probs=229.7
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHH
Q 038673 85 TSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVT 158 (548)
Q Consensus 85 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~ 158 (548)
+.+...+..+...|.+.|++++|...|+++.+ .+..+|..+..+|...|++++|...|+++. +.+..+|..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 33444555555555555555555555555432 234455555555555555555555555543 335667777888
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCH----hhHHHH------------HHHHHccCChhHHHHHHHHHHHcCCCCCChH
Q 038673 159 GYVQNAKPREAIEYFERMQYAGVETDY----VTLVGV------------ISACAQLGVIKYANWVCEIAEGSGFGPINNV 222 (548)
Q Consensus 159 ~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 222 (548)
.|.+.|++++|...|+++... .|+. ..+..+ ...+...|++++|...++.+.+.... +.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~ 177 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW---DA 177 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---Ch
Confidence 888888888888888887764 3433 334333 44478899999999999999987654 88
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS 299 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 299 (548)
.++..++.+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.. ..|+.......+....
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHH
Confidence 9999999999999999999999998863 5788999999999999999999999999987 4666554433332111
Q ss_pred hcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038673 300 HVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-----GGVWGALLGACQIHRNPEIAQIAANHLFEL 373 (548)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 373 (548)
....+..+...+.+.|++++|.+.|+++. ..|+ ...|..+..++...|++++|...++++++.
T Consensus 256 -----------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 256 -----------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp -----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11233445888999999999999999884 4455 346777889999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 374 EPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 374 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999763
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=2.6e-20 Score=194.00 Aligned_cols=359 Identities=10% Similarity=-0.006 Sum_probs=288.2
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
...|..+...+.+.|++++|++.|+++.... +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 3568888999999999999999999999853 3477889999999999999999999999999986 778899999999
Q ss_pred HHHHcCChHHHHHHHccCCC-CCee-------------------------------------------------------
Q 038673 97 MYVKCGFLGCSRKVFDEMPE-RDVV------------------------------------------------------- 120 (548)
Q Consensus 97 ~~~~~g~~~~A~~~~~~m~~-~~~~------------------------------------------------------- 120 (548)
+|...|++++|...|+.+.. |+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999998864421 2110
Q ss_pred --------------hHHHHHHHHHh--------CCChHHHHHHHccCCCC---C-------hhHHHHHHHHHHHCCChhH
Q 038673 121 --------------SWTELIVAYAN--------NGDMESAGGLFNELPLK---D-------KVAWTAMVTGYVQNAKPRE 168 (548)
Q Consensus 121 --------------~~~~li~~~~~--------~g~~~~A~~~f~~m~~~---~-------~~~~~~li~~~~~~g~~~~ 168 (548)
.+..+...+.. .|++++|..+|+++... + ..+|..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 11111111111 14788888888877532 2 2357777788889999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcC
Q 038673 169 AIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 169 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 248 (548)
|+..|++.... .|+...+..+...+...|++++|...+..+.+.... +..++..+...|...|++++|...|+++
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE---YPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999875 466778888888899999999999999999887754 7888999999999999999999999987
Q ss_pred CC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHc
Q 038673 249 KQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRA 325 (548)
Q Consensus 249 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~ 325 (548)
.+ .+...|..+...|...|++++|+..|+++.+. .|+ +...+..+...+...
T Consensus 337 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~-----------------------~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 337 QSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPT-----------------------LPEVPTFFAEILTDR 391 (537)
T ss_dssp HHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CTHHHHHHHHHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------------ChHHHHHHHHHHHHh
Confidence 63 45678889999999999999999999999874 343 345688889999999
Q ss_pred CCHHHHHHHHHhCC-C---CC----ChhHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 326 GCLEEALKMVEKMP-V---EP----NGGVWGALLGACQIH----------RNPEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 326 g~~~~A~~~~~~m~-~---~p----~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
|++++|.+.++++. . .+ ....+..+...+... |++++|...++++++..|+++..+..++.+
T Consensus 392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999998862 1 11 122233444566777 999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHhCC
Q 038673 388 YASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 388 ~~~~g~~~~a~~~~~~m~~~g 408 (548)
|.+.|++++|.+.+++..+..
T Consensus 472 ~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 472 KLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999987643
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.2e-20 Score=195.35 Aligned_cols=357 Identities=11% Similarity=-0.016 Sum_probs=293.3
Q ss_pred CcchHHHhccCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHH
Q 038673 2 DSFPRLVFEQVK--YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTI 79 (548)
Q Consensus 2 ~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 79 (548)
+++|.+.|+++. .||...|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|...++.++
T Consensus 22 ~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 22 YDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567888888765 3788999999999999999999999999999853 3356789999999999999999999999998
Q ss_pred HhCCCCCC------------------------------------------------------------------------
Q 038673 80 LLGGFTSD------------------------------------------------------------------------ 87 (548)
Q Consensus 80 ~~~~~~~~------------------------------------------------------------------------ 87 (548)
+.+ +++
T Consensus 101 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (514)
T 2gw1_A 101 LNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178 (514)
T ss_dssp HSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred hcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence 765 222
Q ss_pred -------hhHHHHHHHHHHH---cCChHHHHHHHccCCC----------------C-CeehHHHHHHHHHhCCChHHHHH
Q 038673 88 -------LYVGNTMIGMYVK---CGFLGCSRKVFDEMPE----------------R-DVVSWTELIVAYANNGDMESAGG 140 (548)
Q Consensus 88 -------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~----------------~-~~~~~~~li~~~~~~g~~~~A~~ 140 (548)
...+..+...+.. .|++++|...|+++.+ | +..+|..+...+...|++++|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 258 (514)
T 2gw1_A 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258 (514)
T ss_dssp SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 2222333333333 7999999999987654 1 34578888999999999999999
Q ss_pred HHccCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038673 141 LFNELP--LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGP 218 (548)
Q Consensus 141 ~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 218 (548)
.|+++. .|+...|..+...|...|++++|+..|+++.... +.+...+..+...+...|++++|...++.+.+....
T Consensus 259 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 336 (514)
T 2gw1_A 259 DIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE- 336 (514)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-
T ss_pred HHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-
Confidence 998874 3347889999999999999999999999998764 445667888999999999999999999999987654
Q ss_pred CChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 219 INNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 219 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+. .|+..
T Consensus 337 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~------ 406 (514)
T 2gw1_A 337 --NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLD------ 406 (514)
T ss_dssp --CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSS------
T ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccc------
Confidence 778999999999999999999999998763 46778999999999999999999999999873 22210
Q ss_pred HHHhhcCCccCCCCcCHHHHHHHHHHHHH---cCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038673 296 TACSHVGLKCYGVSPSTDHYACMVDLLGR---AGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHL 370 (548)
Q Consensus 296 ~a~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 370 (548)
...-....+..+...+.. .|++++|.+.+++.. ..| +..+|..+...+...|+++.|...++++
T Consensus 407 -----------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 407 -----------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp -----------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 000013468888999999 999999999999874 344 4778888889999999999999999999
Q ss_pred hhcCCCCchhHHHH
Q 038673 371 FELEPDKIGNYIIL 384 (548)
Q Consensus 371 ~~~~p~~~~~~~~l 384 (548)
+++.|+++..+..+
T Consensus 476 ~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 476 ADLARTMEEKLQAI 489 (514)
T ss_dssp HHHCSSHHHHHHHH
T ss_pred HHhccccHHHHHHH
Confidence 99999988666655
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=4.7e-18 Score=166.80 Aligned_cols=328 Identities=12% Similarity=0.017 Sum_probs=245.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
|+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+++.. +.+..++..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHH
Confidence 35578888899999999999999999998852 3357788888899999999999999999999885 66788899999
Q ss_pred HHHHHcCChHHHHHHHccCCCCCe------ehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHH
Q 038673 96 GMYVKCGFLGCSRKVFDEMPERDV------VSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREA 169 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 169 (548)
.+|...|++++|...|++..+.+. ..+..+...+. ...+..+...+...|++++|
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------MQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHccCHHHH
Confidence 999999999999999988765322 22222211100 11233445667777777777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 170 IEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 170 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
+..|+++.+.. +.+...+..+...+...|++++|...++.+.+..+. +..++..+...|...|++++|...|++..
T Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 140 ITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD---NTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776653 345566677777777777777777777777766533 66777777777777888888877777665
Q ss_pred C--C-ChhhhH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHH
Q 038673 250 Q--R-NVFSYS------------SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDH 314 (548)
Q Consensus 250 ~--~-~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~ 314 (548)
+ | +...|. .+...+...|++++|+..++++.+. .|+...+ ....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-------------------~~~~ 274 (359)
T 3ieg_A 216 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEY-------------------TVRS 274 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH-------------------HHHH
T ss_pred hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHH-------------------HHHH
Confidence 3 2 222222 2356688999999999999999884 3443221 1133
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
+..+...+...|++++|.+.+++.. ..| +..+|..+...+...|++++|...++++++++|+++..+..+..++..
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 5667888999999999999998874 345 578888888999999999999999999999999998887777766543
No 13
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=7.6e-19 Score=171.45 Aligned_cols=342 Identities=13% Similarity=0.103 Sum_probs=168.9
Q ss_pred CcchHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 038673 2 DSFPRLVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILL 81 (548)
Q Consensus 2 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~ 81 (548)
+++|.+.|++++.|+ +|+.|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++..++.
T Consensus 19 ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 19 LDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 689999999997775 8999999999999999999999653 67889999999999999999999988887774
Q ss_pred CCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHH
Q 038673 82 GGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYV 161 (548)
Q Consensus 82 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 161 (548)
.+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..++.++.
T Consensus 91 ---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~ 159 (449)
T 1b89_A 91 ---ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLV 159 (449)
T ss_dssp ---------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHHHH
T ss_pred ---CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHH
Confidence 45688999999999999999999988864 78889999999999999999999999987 48999999999
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHH
Q 038673 162 QNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDA 241 (548)
Q Consensus 162 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A 241 (548)
+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +. ..+.-...++..|.+.|.+++|
T Consensus 160 ~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~--~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 160 HLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IV--VHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp TTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TT--TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HH--hCHhhHHHHHHHHHHCCCHHHH
Confidence 999999999999988 2788999999999999999999654443 22 2344455799999999999999
Q ss_pred HHHHhcCCC---CChhhhHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHH
Q 038673 242 YRIFVGMKQ---RNVFSYSSMILGFAMH--GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYA 316 (548)
Q Consensus 242 ~~~~~~~~~---~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~ 316 (548)
..+++.... .....|+-|.-+|++. ++..+.+++|.. .....-+|++|.. ...|.
T Consensus 227 i~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---------~ini~k~~~~~~~-----------~~~w~ 286 (449)
T 1b89_A 227 ITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS---------RVNIPKVLRAAEQ-----------AHLWA 286 (449)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---------TSCHHHHHHHHHT-----------TTCHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------HhcCcHHHHHHHH-----------HHHHH
Confidence 999998764 3456788888788776 344455554431 2334456777764 34699
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 038673 317 CMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDD 396 (548)
Q Consensus 317 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 396 (548)
-++..|...++++.|....-+-+ |+..--..+.....+-.+.|.--++..-.++..|. ..+.|..++...=+...
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~---~l~~ll~~l~~~ld~~r 361 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL---LLNDLLMVLSPRLDHTR 361 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG---GHHHHHHHHGGGCCHHH
T ss_pred HHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH---HHHHHHHHHHhccCcHH
Confidence 99999999999999988765543 34333344445555666666665555555554444 34444444433333333
Q ss_pred HHHH
Q 038673 397 VSRV 400 (548)
Q Consensus 397 a~~~ 400 (548)
+.++
T Consensus 362 ~v~~ 365 (449)
T 1b89_A 362 AVNY 365 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=3.6e-17 Score=160.42 Aligned_cols=308 Identities=10% Similarity=0.018 Sum_probs=232.5
Q ss_pred hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHh
Q 038673 52 SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYAN 131 (548)
Q Consensus 52 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 131 (548)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|+++.+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------------- 65 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIA--------------- 65 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------------
Confidence 3456666667777777888888877777764 55667777777777777777777777655422
Q ss_pred CCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC----CHhhHHHH------------HHHH
Q 038673 132 NGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVET----DYVTLVGV------------ISAC 195 (548)
Q Consensus 132 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~l------------l~~~ 195 (548)
..+.+...|..+...|...|++++|...|++..+. .| +...+..+ ...+
T Consensus 66 -------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (359)
T 3ieg_A 66 -------------LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDA 130 (359)
T ss_dssp -------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------hCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234556777777777777777777777777654 33 22233333 5678
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHH
Q 038673 196 AQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAA 272 (548)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 272 (548)
...|++++|...++.+.+..+. +..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVCVW---DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999999988755 889999999999999999999999998764 4678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCChh-----H
Q 038673 273 IQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPNGG-----V 346 (548)
Q Consensus 273 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~-----~ 346 (548)
+..|++..+. .|+.......+.... .......+...+.+.|++++|.+.+++.. ..|+.. .
T Consensus 208 ~~~~~~a~~~--~~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 274 (359)
T 3ieg_A 208 LSEVRECLKL--DQDHKRCFAHYKQVK-----------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274 (359)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHHHHhh--CccchHHHHHHHHHH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 9999999874 454433211111100 11223345778899999999999999874 345532 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 347 WGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 347 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+..+...+...|+++.|...++++.+..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4446678999999999999999999999999999999999999999999999999998753
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=1.6e-18 Score=180.39 Aligned_cols=357 Identities=12% Similarity=0.012 Sum_probs=278.1
Q ss_pred CCcchHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHH
Q 038673 1 MDSFPRLVFEQVK---YKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQ 77 (548)
Q Consensus 1 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~ 77 (548)
++++|.+.|+++. +.++..|..+...|.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++
T Consensus 40 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~- 117 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS- 117 (537)
T ss_dssp CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence 4678888887654 4577899999999999999999999999999853 3367788999999999999999999986
Q ss_pred HHHhCCCC------------------------------------CChh------------------------------HH
Q 038673 78 TILLGGFT------------------------------------SDLY------------------------------VG 91 (548)
Q Consensus 78 ~~~~~~~~------------------------------------~~~~------------------------------~~ 91 (548)
.+...+-. |+.. ..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence 33221000 0000 22
Q ss_pred HHHHHHHHH--------cCChHHHHHHHccCCC--CC--------eehHHHHHHHHHhCCChHHHHHHHccCC--CCChh
Q 038673 92 NTMIGMYVK--------CGFLGCSRKVFDEMPE--RD--------VVSWTELIVAYANNGDMESAGGLFNELP--LKDKV 151 (548)
Q Consensus 92 ~~li~~~~~--------~g~~~~A~~~~~~m~~--~~--------~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~ 151 (548)
..+...+.. .|++++|..+|+++.+ |+ ..+|..+...+...|++++|...|++.. .|+..
T Consensus 198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~ 277 (537)
T 3fp2_A 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN 277 (537)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCch
Confidence 222222221 2478899999998876 33 2246677788999999999999999875 45578
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
+|..+...|...|++++|+..|++..... +.+..++..+...+...|++++|...++.+.+.... +..++..+...
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~ 353 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE---NVYPYIQLACL 353 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence 89999999999999999999999998764 446778899999999999999999999999987754 77889999999
Q ss_pred HhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCC
Q 038673 232 YSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGV 308 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 308 (548)
|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. |+.. ..
T Consensus 354 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~-----------------~~ 414 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQE-----------------KI 414 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCS-----------------SC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--Ccch-----------------hh
Confidence 9999999999999998763 456789999999999999999999999988742 2111 11
Q ss_pred CcCHHHHHHHHHHHHHc----------CCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 309 SPSTDHYACMVDLLGRA----------GCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 309 ~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
......+..+...+.+. |++++|...|++.. ..| +...|..+...+...|+++.|...+++++++.|.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 11223344556677777 99999999999874 345 4778888999999999999999999999999998
Q ss_pred CchhHH
Q 038673 377 KIGNYI 382 (548)
Q Consensus 377 ~~~~~~ 382 (548)
++....
T Consensus 495 ~~~~~~ 500 (537)
T 3fp2_A 495 MDEKLQ 500 (537)
T ss_dssp CHHHHH
T ss_pred cHHHHH
Confidence 775544
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.2e-17 Score=160.09 Aligned_cols=295 Identities=14% Similarity=-0.004 Sum_probs=202.2
Q ss_pred CChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHH
Q 038673 50 PVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAY 129 (548)
Q Consensus 50 p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 129 (548)
.+...+..+...+...|++++|..+++.+++.. +.+..++..++..+...|++++|...|+++.+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------- 84 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVD------------- 84 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH-------------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH-------------
Confidence 344445555555555555555555555555553 44444444455555555555555555443321
Q ss_pred HhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCC-ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHH
Q 038673 130 ANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNA-KPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVC 208 (548)
Q Consensus 130 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 208 (548)
..+.+...|..+...+...| ++++|...|++..... +.+...+..+...+...|++++|...+
T Consensus 85 ---------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 85 ---------------LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp ---------------HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ---------------hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 01234556666667777777 7777777777766543 224455667777777777777777777
Q ss_pred HHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038673 209 EIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK 285 (548)
Q Consensus 209 ~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 285 (548)
+.+.+.... +...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|++..+....
T Consensus 149 ~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 149 FTAAQLMKG---CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp HHHHHHTTT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 777776544 555666688888888888888888877653 35677888888888999999999999888763111
Q ss_pred CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHH
Q 038673 286 PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIA 363 (548)
Q Consensus 286 p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a 363 (548)
... ......+...+..+...|.+.|++++|.+.+++.. ..| +...|..+...+...|++++|
T Consensus 226 ~~~----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 226 IGN----------------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp TSC----------------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred ccc----------------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 000 00123345678899999999999999999999874 334 477888899999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHH-HcCCc
Q 038673 364 QIAANHLFELEPDKIGNYIILSNIYA-SAGMW 394 (548)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~ 394 (548)
...+++++++.|+++..+..++.++. ..|+.
T Consensus 290 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999999999999999999884 44543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=5.5e-16 Score=150.19 Aligned_cols=287 Identities=10% Similarity=-0.009 Sum_probs=216.7
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHH
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTM 94 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 94 (548)
.++..+..+...+...|++++|+++|+++.... +.+...+..++..+...|++++|...++.+++.. +.+..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence 466778889999999999999999999998853 3356677778888999999999999999999985 6778889999
Q ss_pred HHHHHHcC-ChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHH
Q 038673 95 IGMYVKCG-FLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYF 173 (548)
Q Consensus 95 i~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 173 (548)
...|...| ++++|...|++..+. .+.+...|..+...+...|++++|+..|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 148 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTL----------------------------EKTYGPAWIAYGHSFAVESEHDQAMAAY 148 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTT----------------------------CTTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHh----------------------------CCccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999 888888887665431 1224556677777777777777777777
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---
Q 038673 174 ERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--- 250 (548)
Q Consensus 174 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--- 250 (548)
++..+.. +.+...+..+...+...|++++|...++.+.+.... +..++..+...|.+.|++++|...|+++.+
T Consensus 149 ~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 149 FTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE---DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 7776643 223445555677777777788888777777776543 677777888888888888888877776542
Q ss_pred ---------CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHH
Q 038673 251 ---------RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDL 321 (548)
Q Consensus 251 ---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~ 321 (548)
.+..+|..+...|...|++++|+..|++..+. .|+ +...+..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~-----------------------~~~~~~~la~~ 279 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQ-----------------------NASTYSAIGYI 279 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------------------CSHHHHHHHHH
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--Ccc-----------------------chHHHHHHHHH
Confidence 23467888888999999999999999998874 333 34567888889
Q ss_pred HHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHH-HhcCCHH
Q 038673 322 LGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGAC-QIHRNPE 361 (548)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~-~~~~~~~ 361 (548)
|.+.|++++|.+.+++.. ..|+ ...+..+..++ ...|+.+
T Consensus 280 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 280 HSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999998885 5565 56666666666 4555543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=4.1e-17 Score=161.05 Aligned_cols=273 Identities=14% Similarity=0.038 Sum_probs=210.0
Q ss_pred HcCChHHHHH-HHccCCC-----C--CeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhH
Q 038673 100 KCGFLGCSRK-VFDEMPE-----R--DVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPRE 168 (548)
Q Consensus 100 ~~g~~~~A~~-~~~~m~~-----~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~ 168 (548)
-.|++++|.. .|++..+ | +...|..+...+.+.|++++|...|+++. +.+..+|..+...|...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3467777777 6665443 1 35567777788888888888888877764 3466788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHH----------------HHHHHH
Q 038673 169 AIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGS----------------ALIDMY 232 (548)
Q Consensus 169 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~----------------~li~~y 232 (548)
|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.... +...+. .+...+
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA---YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT---TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 888888887754 446677888888888888888888888888876644 322222 233334
Q ss_pred hcCCCHHHHHHHHhcCCC--C---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 233 SKCGSIDDAYRIFVGMKQ--R---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
..|++++|...|+++.+ | +..+|..+...|...|++++|+..|+++.+. .|+
T Consensus 193 -~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~-------------------- 249 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPN-------------------- 249 (368)
T ss_dssp -HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------------------
T ss_pred -hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC--------------------
Confidence 88999999999998763 3 4678899999999999999999999999873 333
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--------
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDK-------- 377 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------- 377 (548)
+...|..+...+.+.|++++|.+.++++. ..| +...|..+..++...|+++.|...+++++++.|++
T Consensus 250 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 250 ---DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 34568889999999999999999999874 345 47788888899999999999999999999988877
Q ss_pred ---chhHHHHHHHHHHcCCchHHHHHHH
Q 038673 378 ---IGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 378 ---~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
...|..++.+|...|++++|..+++
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 7899999999999999999998875
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=8e-16 Score=146.46 Aligned_cols=250 Identities=10% Similarity=-0.005 Sum_probs=197.5
Q ss_pred HHHHhCCChHHHHHHHccCCCCCh----hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChh
Q 038673 127 VAYANNGDMESAGGLFNELPLKDK----VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIK 202 (548)
Q Consensus 127 ~~~~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 202 (548)
+-....|++..|+..++.....++ .....+.++|...|++++|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 344567888888888777654432 3445677889999999988876654 2 3567778888888888889999
Q ss_pred HHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 203 YANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
.|.+.++.+...+..| .+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|++.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P-~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDV-TNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHSCCCC-SCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCC-CCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 9999999988877656 5778888888999999999999999998 567788888999999999999999999999885
Q ss_pred CCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCH
Q 038673 283 ETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNP 360 (548)
Q Consensus 283 g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~ 360 (548)
.|+.... .....++..+...|++++|..+|+++. ...+...|+.+..++...|++
T Consensus 160 --~p~~~~~---------------------~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 160 --DEDATLT---------------------QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp --CTTCHHH---------------------HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH
T ss_pred --CcCcHHH---------------------HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 4553211 011223344455689999999998884 334678888899999999999
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH-HHHHHHHHHh
Q 038673 361 EIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDD-VSRVRRLLKM 406 (548)
Q Consensus 361 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 406 (548)
++|+..++++++.+|+++.++..++.++...|++++ +.++++++.+
T Consensus 217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999976 5688887765
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=5.9e-17 Score=159.92 Aligned_cols=256 Identities=11% Similarity=0.030 Sum_probs=201.8
Q ss_pred CeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038673 118 DVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISA 194 (548)
Q Consensus 118 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 194 (548)
+...|..+...+.+.|++++|...|+++. +.+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45567777888888888888888887764 3467788888889999999999999998887753 3457778888888
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCChHh----------HHHHHHHHHhcCCCHHHHHHHHhcCCC--C---ChhhhHHH
Q 038673 195 CAQLGVIKYANWVCEIAEGSGFGPINNVV----------VGSALIDMYSKCGSIDDAYRIFVGMKQ--R---NVFSYSSM 259 (548)
Q Consensus 195 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~----------~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~l 259 (548)
+...|++++|...++.+.+.... +.. ++..+...|.+.|++++|...|+++.+ | +..+|..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPK---YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH---HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCcc---chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 88999999999999888876532 322 334458899999999999999998863 2 57789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 260 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
...|...|++++|+..|+++.+. .|+ +..+|..+..+|.+.|++++|.+.|++..
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~-----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPE-----------------------DYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCC-----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999873 333 34568889999999999999999998874
Q ss_pred -CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------------CchhHHHHHHHHHHcCCchHHHHHHH
Q 038673 340 -VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPD------------KIGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 340 -~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
..|+ ..+|..+..++...|++++|...+++++++.|+ +...+..|..++...|+.+.+.++.+
T Consensus 275 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 275 EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 4555 788888989999999999999999999997776 35688999999999999998887764
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=1.3e-14 Score=149.26 Aligned_cols=352 Identities=12% Similarity=0.007 Sum_probs=290.1
Q ss_pred CCCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhc----cCCcHHHHHHHHHHHHhCCCC
Q 038673 14 YKNPFLWTALIRGYIL----QGHLKDSISLYCSMRREGIGPVSFTLSALFKACTE----VLDVSLGQQIHAQTILLGGFT 85 (548)
Q Consensus 14 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~ 85 (548)
..++.++..+-..|.. .+++++|+..|++..+.| +...+..|...+.. .++.++|...++...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3467778888888888 899999999999998864 56778888888877 899999999999998865
Q ss_pred CChhHHHHHHHHHHH----cCChHHHHHHHccCCC-CCeehHHHHHHHHHh----CCChHHHHHHHccCCC-CChhHHHH
Q 038673 86 SDLYVGNTMIGMYVK----CGFLGCSRKVFDEMPE-RDVVSWTELIVAYAN----NGDMESAGGLFNELPL-KDKVAWTA 155 (548)
Q Consensus 86 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~ 155 (548)
+...+..|..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|.+.|++..+ .+..++..
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~ 188 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 56777888888988 7899999999998765 456678888888887 8899999999987653 47788889
Q ss_pred HHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 156 MVTGYVQ----NAKPREAIEYFERMQYAGVETDYVTLVGVISACAQ----LGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 156 li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~ 260 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-----NSIAQFR 260 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-----CHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHH
Confidence 9999988 899999999999988865 45567777777765 789999999999988764 4557777
Q ss_pred HHHHHhc----CCCHHHHHHHHhcCCC-CChhhhHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 228 LIDMYSK----CGSIDDAYRIFVGMKQ-RNVFSYSSMILGFAMH-----GRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 228 li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
|..+|.. .++.++|...|++..+ .+...+..+...|... ++.++|+..|++..+.|
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-------------- 326 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-------------- 326 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--------------
Confidence 8888887 8999999999998765 4667777888888877 89999999999988753
Q ss_pred HhhcCCccCCCCcCHHHHHHHHHHHHHcC---CHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 038673 298 CSHVGLKCYGVSPSTDHYACMVDLLGRAG---CLEEALKMVEKMPVEPNGGVWGALLGACQI----HRNPEIAQIAANHL 370 (548)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~ 370 (548)
+...+..+..+|...| ++++|.+.|++.....++..+..|-..+.. .+++++|...+++.
T Consensus 327 -------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 327 -------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp -------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 2234666777777656 789999999887534567888888888888 89999999999999
Q ss_pred hhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 038673 371 FELEPDKIGNYIILSNIYAS----AGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 371 ~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 409 (548)
.+.. ++..+..|+.+|.. .+++++|...+++..+.+.
T Consensus 394 ~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8754 56789999999998 8999999999999988774
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=2.2e-15 Score=154.08 Aligned_cols=367 Identities=10% Similarity=-0.056 Sum_probs=249.9
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHC-----C--CCC-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhC-----C
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRRE-----G--IGP-VSFTLSALFKACTEVLDVSLGQQIHAQTILLG-----G 83 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----~ 83 (548)
...||.|...+...|++++|++.|++..+. + ..| ...+|+.+..++...|++++|...++.+++.. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 457999999999999999999999887641 1 123 35678999999999999999999999887642 0
Q ss_pred CC-CChhHHHHHHHHHHHcC--ChHHHHHHHccCCC--C-CeehHHHHHHH---HHhCCChHHHHHHHccCC---CCChh
Q 038673 84 FT-SDLYVGNTMIGMYVKCG--FLGCSRKVFDEMPE--R-DVVSWTELIVA---YANNGDMESAGGLFNELP---LKDKV 151 (548)
Q Consensus 84 ~~-~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~--~-~~~~~~~li~~---~~~~g~~~~A~~~f~~m~---~~~~~ 151 (548)
.. ....++..+..++.+.| ++++|...|++..+ | +...+..+... +...++.++|++.|++.. +.+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 11 23456666666666554 68999999998764 4 34455544444 456678888888877643 44666
Q ss_pred HHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 152 AWTAMVTGYVQ----NAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 152 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
.+..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+..+. +..++..
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~ 286 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN---NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC---hHHHHHH
Confidence 77766655554 467889999999887754 456677888999999999999999999999988755 7788888
Q ss_pred HHHHHhcC-------------------CCHHHHHHHHhcCC---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038673 228 LIDMYSKC-------------------GSIDDAYRIFVGMK---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK 285 (548)
Q Consensus 228 li~~y~~~-------------------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 285 (548)
+...|... +..+.|...|+... ..+..+|..+...|...|++++|+..|++..+. .
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~ 364 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--E 364 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--C
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--C
Confidence 87776532 23566777776654 345678899999999999999999999999884 3
Q ss_pred CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHH-HHHHcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHH
Q 038673 286 PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVD-LLGRAGCLEEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIA 363 (548)
Q Consensus 286 p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a 363 (548)
|+..... ..+..+.. .+...|++++|++.|++.- +.|+...+... .+.+
T Consensus 365 ~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l 415 (472)
T 4g1t_A 365 LTPVAKQ--------------------LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKL 415 (472)
T ss_dssp CCHHHHH--------------------HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHH
T ss_pred CCChHHH--------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHH
Confidence 4332111 11222222 2346799999999998763 66775444332 3455
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEE
Q 038673 364 QIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWL 418 (548)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 418 (548)
..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.|-......+|+
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 6778888889999999999999999999999999999999988765544445554
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=7.3e-17 Score=159.28 Aligned_cols=257 Identities=11% Similarity=-0.062 Sum_probs=201.2
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHH
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTM 94 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 94 (548)
.+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...++.+++.. +.+..++..+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 139 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMAL 139 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHH
Confidence 355668889999999999999999999998753 3367788889999999999999999999999875 6678889999
Q ss_pred HHHHHHcCChHHHHHHHccCCC--C-C----------eehHHHHHHHHHhCCChHHHHHHHccCC---CC--ChhHHHHH
Q 038673 95 IGMYVKCGFLGCSRKVFDEMPE--R-D----------VVSWTELIVAYANNGDMESAGGLFNELP---LK--DKVAWTAM 156 (548)
Q Consensus 95 i~~~~~~g~~~~A~~~~~~m~~--~-~----------~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~--~~~~~~~l 156 (548)
..+|...|++++|...|+++.+ | + ...+..+...+...|++++|...|+++. +. +..+|..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999988764 1 1 2233445778888899999999888775 22 57788888
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCC
Q 038673 157 VTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 157 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g 236 (548)
...|...|++++|+..|++..+.. +.+..++..+..++...|++++|...++.+.+..+. +..++..+..+|.+.|
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG---FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCC
Confidence 888999999999999998887753 446778888888888999999999999988887644 7888888899999999
Q ss_pred CHHHHHHHHhcCCC--C-------------ChhhhHHHHHHHHhcCCHHHHHHHHHH
Q 038673 237 SIDDAYRIFVGMKQ--R-------------NVFSYSSMILGFAMHGRAHAAIQLFGD 278 (548)
Q Consensus 237 ~~~~A~~~~~~~~~--~-------------~~~~~~~li~~~~~~g~~~~A~~l~~~ 278 (548)
++++|...|+++.+ | +...|..+..++...|+.+.+....++
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999888887753 1 256788888888888888887776654
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=1.6e-16 Score=156.76 Aligned_cols=257 Identities=11% Similarity=-0.017 Sum_probs=200.3
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+++.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~ 139 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALA 139 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 45678888888999999999999999988753 3366778888888888999999999999988875 66788888899
Q ss_pred HHHHHcCChHHHHHHHccCCC--C-CeehHHH---------------HHHHHHhCCChHHHHHHHccCC---CC--ChhH
Q 038673 96 GMYVKCGFLGCSRKVFDEMPE--R-DVVSWTE---------------LIVAYANNGDMESAGGLFNELP---LK--DKVA 152 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~---------------li~~~~~~g~~~~A~~~f~~m~---~~--~~~~ 152 (548)
.+|...|++++|...|+++.+ | +...+.. .+..+...|++++|...|+++. +. +..+
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 999999999999998887653 2 2222211 2333347888888888888764 22 4678
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
|..+...|.+.|++++|+..|+++.... +.+..++..+...+...|++++|...++.+.+..+. +..++..+...|
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~ 295 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG---YIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHH
Confidence 8888888888899999988888887653 345677888888888888899998888888877543 778888888888
Q ss_pred hcCCCHHHHHHHHhcCCC---CC-----------hhhhHHHHHHHHhcCCHHHHHHHHHHH
Q 038673 233 SKCGSIDDAYRIFVGMKQ---RN-----------VFSYSSMILGFAMHGRAHAAIQLFGDM 279 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~---~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m 279 (548)
.+.|++++|...|+++.+ .+ ..+|..+..+|...|+.++|..++++.
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 888998888888887653 12 567888888888888888888877643
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=9.7e-16 Score=145.90 Aligned_cols=264 Identities=11% Similarity=-0.023 Sum_probs=206.9
Q ss_pred HHHcCChHHHHHHHccCCCCC----eehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHH
Q 038673 98 YVKCGFLGCSRKVFDEMPERD----VVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYF 173 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 173 (548)
....|++..|...++.....+ ......+..+|...|++++|...++....++..++..+...+...|+.++|++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 345688888888887766533 2344567788899999999998888766667778888999999999999999999
Q ss_pred HHHHHCCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--
Q 038673 174 ERMQYAGVETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-- 250 (548)
Q Consensus 174 ~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 250 (548)
+++...+..|+ ...+..+..++...|++++|.+.++. | .+..++..++..|.+.|++++|.+.|+++.+
T Consensus 89 ~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------G-DSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------C-CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 99988776565 44556666888999999999999886 3 5888999999999999999999999999874
Q ss_pred CChhhhHHH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcC
Q 038673 251 RNVFSYSSM----ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAG 326 (548)
Q Consensus 251 ~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g 326 (548)
|+.. ...+ +..+...|++++|+.+|+++.+. .|+ +...++.+..++.+.|
T Consensus 161 p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~-----------------------~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 161 EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSP-----------------------TLLLLNGQAACHMAQG 214 (291)
T ss_dssp TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCC-----------------------CHHHHHHHHHHHHHTT
T ss_pred cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCC-----------------------cHHHHHHHHHHHHHcC
Confidence 4432 2222 33344568999999999999984 343 4567889999999999
Q ss_pred CHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHH-HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 038673 327 CLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEI-AQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 327 ~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
++++|.+.|++.- ..|+ +.+|..+...+...|+.++ +.++++++++++|+++.+ .+...+.+.++++..
T Consensus 215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 9999999999863 4564 7889999999999998865 678999999999998843 334455555555543
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=5.3e-16 Score=150.09 Aligned_cols=255 Identities=11% Similarity=0.028 Sum_probs=190.0
Q ss_pred ehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 038673 120 VSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACA 196 (548)
Q Consensus 120 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 196 (548)
..|..+...+...|++++|..+|+++. +.+...|..+...+...|++++|...|+++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 344455555555566666665555543 2356667777777777777777777777776653 335566677777777
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCChHhHHHHH--------------HH-HHhcCCCHHHHHHHHhcCCC---CChhhhHH
Q 038673 197 QLGVIKYANWVCEIAEGSGFGPINNVVVGSAL--------------ID-MYSKCGSIDDAYRIFVGMKQ---RNVFSYSS 258 (548)
Q Consensus 197 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l--------------i~-~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 258 (548)
..|++++|.+.++.+.+.... +...+..+ .. .+...|++++|.+.++++.+ .+...+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ---YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT---TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc---cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 777777777777777766533 33333333 33 47788889999998888753 46678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 259 MILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 259 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
+...|...|++++|+..++++.+. .|+ +...+..+...+...|++++|.+.+++.
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPD-----------------------DAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCC-----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999999998873 333 3456888889999999999999999887
Q ss_pred C-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------------CchhHHHHHHHHHHcCCchHHHHHHHH
Q 038673 339 P-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPD------------KIGNYIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 339 ~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
. ..| +..+|..+...+...|+++.|...++++++..|+ ++..+..++.+|...|++++|..++++
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3 344 4778888889999999999999999999999998 688999999999999999999998764
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=4.5e-17 Score=158.97 Aligned_cols=279 Identities=11% Similarity=0.079 Sum_probs=111.0
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHc
Q 038673 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFN 143 (548)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 143 (548)
+.|+++.|.++++++ +++.+|..|+.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+..++
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345556666665554 11236666666666666666666666443 344466666666666666666666544
Q ss_pred cCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCCh
Q 038673 144 ELPL--KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINN 221 (548)
Q Consensus 144 ~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 221 (548)
...+ +++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.++.|..+|..+
T Consensus 86 ~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------- 148 (449)
T 1b89_A 86 MARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------- 148 (449)
T ss_dssp -----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------
T ss_pred HHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------
Confidence 4432 234556666666666666666665553 245556666666666666666666666543
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhc
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 301 (548)
..|..|++++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~----------------------- 202 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH----------------------- 202 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----------------------
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH-----------------------
Confidence 24556666666666666666666666 2556666666666666666666332221
Q ss_pred CCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCC--
Q 038673 302 GLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHR--NPEIAQIAANHLFELEP-- 375 (548)
Q Consensus 302 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p-- 375 (548)
+..++.....++..|.+.|++++|..+++..- ..+- ...|+-|--++++.+ +..+..+.|..-..+.|
T Consensus 203 ------L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~ 276 (449)
T 1b89_A 203 ------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL 276 (449)
T ss_dssp ------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH
T ss_pred ------HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH
Confidence 22344456678999999999999999998763 4433 667777766666653 34444455444444555
Q ss_pred ---CCchhHHHHHHHHHHcCCchHHHHH
Q 038673 376 ---DKIGNYIILSNIYASAGMWDDVSRV 400 (548)
Q Consensus 376 ---~~~~~~~~l~~~~~~~g~~~~a~~~ 400 (548)
.+...|.-++..|..-+.|+.|..+
T Consensus 277 ~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 277 RAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 5677899999999999999999875
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1.9e-14 Score=149.48 Aligned_cols=359 Identities=9% Similarity=0.012 Sum_probs=201.2
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
|...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+|+.+++. .|+...|..++
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHH
Confidence 5667888887 46778888888888888764 2335566777788888888888888888888774 34666777776
Q ss_pred HHH-HHcCChHHHHH----HHccCC-----C-CCeehHHHHHHHHHh---------CCChHHHHHHHccCCC-CC---hh
Q 038673 96 GMY-VKCGFLGCSRK----VFDEMP-----E-RDVVSWTELIVAYAN---------NGDMESAGGLFNELPL-KD---KV 151 (548)
Q Consensus 96 ~~~-~~~g~~~~A~~----~~~~m~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~f~~m~~-~~---~~ 151 (548)
... ...|+.+.|++ +|+... . ++...|...+....+ .|+++.|..+|++... |+ ..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 34566665554 555432 1 345567666665544 5778888888877543 21 12
Q ss_pred HHHHHHHHH-------------HHCCChhHHHHHHHHHH------HCC---CCCCH--------hhHHHHHHHHHc----
Q 038673 152 AWTAMVTGY-------------VQNAKPREAIEYFERMQ------YAG---VETDY--------VTLVGVISACAQ---- 197 (548)
Q Consensus 152 ~~~~li~~~-------------~~~g~~~~A~~l~~~m~------~~g---~~p~~--------~t~~~ll~~~~~---- 197 (548)
.|....... .+.+++.+|..++.++. +.. ++|+. ..|...+.....
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 333222110 12345666766666532 111 24431 234333332221
Q ss_pred cCCh----hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc-------CCCHH-------HHHHHHhcCCC---C-Chhh
Q 038673 198 LGVI----KYANWVCEIAEGSGFGPINNVVVGSALIDMYSK-------CGSID-------DAYRIFVGMKQ---R-NVFS 255 (548)
Q Consensus 198 ~g~~----~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~ 255 (548)
.++. +.+..+|++++...+ .+..+|..++..+.+ .|+++ +|..+|++..+ | +...
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p---~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 1222 356677777777643 367777777777765 67765 77788777653 2 4567
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038673 256 YSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMV 335 (548)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 335 (548)
|..++..+...|++++|..+|+++.+ +.|+..+ ..|..++..+.+.|++++|.++|
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~----------------------~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPT----------------------LVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHH----------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCch----------------------HHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777777778888888888888776 3444211 12444444444445555555555
Q ss_pred HhCC-CCCC-hhHHHHHHH-HHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 336 EKMP-VEPN-GGVWGALLG-ACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 336 ~~m~-~~p~-~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
++.. ..|+ ...|..... .+...|+.+.|..+|+++++..|+++..+..++..+.+.|+.++|..++++...
T Consensus 380 ~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 380 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 4442 1121 111111111 112344555555555555555555544555555555555555555555555444
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=1.2e-14 Score=149.50 Aligned_cols=347 Identities=12% Similarity=0.001 Sum_probs=281.7
Q ss_pred CcchHHHhccCC-CCCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhc----cCCcHHHH
Q 038673 2 DSFPRLVFEQVK-YKNPFLWTALIRGYIL----QGHLKDSISLYCSMRREGIGPVSFTLSALFKACTE----VLDVSLGQ 72 (548)
Q Consensus 2 ~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~~~~~~a~ 72 (548)
++.|...|.... ..++..+..|-..|.. .+++++|++.|++..+.| +...+..+...+.. .+++++|.
T Consensus 59 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 135 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESV 135 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 355677776443 3466788889999998 899999999999999865 66777778777777 78999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHH----cCChHHHHHHHccCCC-CCeehHHHHHHHHHh----CCChHHHHHHHc
Q 038673 73 QIHAQTILLGGFTSDLYVGNTMIGMYVK----CGFLGCSRKVFDEMPE-RDVVSWTELIVAYAN----NGDMESAGGLFN 143 (548)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~f~ 143 (548)
..++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.. .++.++|.+.|+
T Consensus 136 ~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 136 KWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 9999998876 56788888889987 7899999999998765 567788888888988 899999999998
Q ss_pred cCC-CCChhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChhHHHHHHHHHHHc
Q 038673 144 ELP-LKDKVAWTAMVTGYVQ----NAKPREAIEYFERMQYAGVETDYVTLVGVISACAQ----LGVIKYANWVCEIAEGS 214 (548)
Q Consensus 144 ~m~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~ 214 (548)
+.. ..+..++..+...|.. .+++++|..+|++..+.| +...+..+...+.. .++.++|...++...+.
T Consensus 212 ~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 212 KSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 865 3467788888888887 899999999999988765 44566666666766 78999999999999876
Q ss_pred CCCCCChHhHHHHHHHHHhcC-----CCHHHHHHHHhcCCC-CChhhhHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q 038673 215 GFGPINNVVVGSALIDMYSKC-----GSIDDAYRIFVGMKQ-RNVFSYSSMILGFAMHG---RAHAAIQLFGDMVKTETK 285 (548)
Q Consensus 215 ~~~p~~~~~~~~~li~~y~~~-----g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~ 285 (548)
+ +...+..|..+|... +++++|...|++..+ .+...+..+...|...| +.++|++.|++..+.|
T Consensus 289 ~-----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-- 361 (490)
T 2xm6_A 289 G-----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-- 361 (490)
T ss_dssp T-----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--
T ss_pred C-----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--
Confidence 4 556778888999887 999999999998764 46677888888888766 7899999999998752
Q ss_pred CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----c
Q 038673 286 PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGR----AGCLEEALKMVEKMPVEPNGGVWGALLGACQI----H 357 (548)
Q Consensus 286 p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~ 357 (548)
++..+..|..+|.. .+++++|.+.|++.....+...+..|-..+.. .
T Consensus 362 -------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 362 -------------------------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred -------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC
Confidence 34557778888887 89999999999987533467788888888887 8
Q ss_pred CCHHHHHHHHHHHhhcCCC---CchhHHHHHHHHHH
Q 038673 358 RNPEIAQIAANHLFELEPD---KIGNYIILSNIYAS 390 (548)
Q Consensus 358 ~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 390 (548)
++.++|...+++..+..|+ ++.....|..++..
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999999998854 66566666555443
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=7.4e-15 Score=152.64 Aligned_cols=376 Identities=10% Similarity=-0.009 Sum_probs=276.4
Q ss_pred CcchHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHh-hccCCcHHHHH----
Q 038673 2 DSFPRLVFEQVKY---KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKAC-TEVLDVSLGQQ---- 73 (548)
Q Consensus 2 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~-~~~~~~~~a~~---- 73 (548)
++.|+.+|+++.. .+...|...+..+.+.|++++|..+|++.... .|+...|...+... ...|+.+.|.+
T Consensus 28 ~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~ 105 (530)
T 2ooe_A 28 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQ 105 (530)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHH
Confidence 4678899987754 35567999999999999999999999999985 47877777776533 34577776655
Q ss_pred HHHHHHHhCCCC-CChhHHHHHHHHHHH---------cCChHHHHHHHccCCC-CCe---ehHHHHHHHH----------
Q 038673 74 IHAQTILLGGFT-SDLYVGNTMIGMYVK---------CGFLGCSRKVFDEMPE-RDV---VSWTELIVAY---------- 129 (548)
Q Consensus 74 ~~~~~~~~~~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~-~~~---~~~~~li~~~---------- 129 (548)
+|+..++.-|.. ++..+|...+....+ .|+++.|+++|++..+ |+. ..|.......
T Consensus 106 ~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~ 185 (530)
T 2ooe_A 106 AYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKK 185 (530)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHH
Confidence 777777652244 456788888887765 7899999999998775 332 2343322211
Q ss_pred ---HhCCChHHHHHHHcc-------CC------CCC--------hhHHHHHHHHHHHC----CCh----hHHHHHHHHHH
Q 038673 130 ---ANNGDMESAGGLFNE-------LP------LKD--------KVAWTAMVTGYVQN----AKP----REAIEYFERMQ 177 (548)
Q Consensus 130 ---~~~g~~~~A~~~f~~-------m~------~~~--------~~~~~~li~~~~~~----g~~----~~A~~l~~~m~ 177 (548)
.+.++++.|..++.. +. .|+ ...|...+.....+ ++. ++|..+|++..
T Consensus 186 ~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al 265 (530)
T 2ooe_A 186 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL 265 (530)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence 123566777765553 11 122 34676666544332 232 37888999988
Q ss_pred HCCCCCCHhhHHHHHHHHHc-------cCChh-------HHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHH
Q 038673 178 YAGVETDYVTLVGVISACAQ-------LGVIK-------YANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYR 243 (548)
Q Consensus 178 ~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~ 243 (548)
... +-+...|......+.+ .|+++ +|..+++..++. ..| .+..++..++..+.+.|++++|..
T Consensus 266 ~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p-~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 266 LVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLK-KNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCS-SCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCc-ccHHHHHHHHHHHHhcCCHHHHHH
Confidence 752 3456677777777765 79987 899999999862 124 589999999999999999999999
Q ss_pred HHhcCCC--C-Ch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHH
Q 038673 244 IFVGMKQ--R-NV-FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMV 319 (548)
Q Consensus 244 ~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li 319 (548)
+|+++.+ | +. ..|..++..+.+.|+.++|.++|++..+. .|+. ...|...+
T Consensus 343 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~-----------------------~~~~~~~a 397 (530)
T 2ooe_A 343 IYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTR-----------------------HHVYVTAA 397 (530)
T ss_dssp HHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCC-----------------------THHHHHHH
T ss_pred HHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCc-----------------------hHHHHHHH
Confidence 9998763 3 33 47999999999999999999999999873 3331 12232222
Q ss_pred HH-HHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch----hHHHHHHHHHHcC
Q 038673 320 DL-LGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG----NYIILSNIYASAG 392 (548)
Q Consensus 320 ~~-~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g 392 (548)
.. +...|+.++|..+|++.- ..| +...|..++......|+.+.|..+|+++++..|.++. .|...+......|
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 22 346899999999999763 345 4789999999999999999999999999998776654 7777888888999
Q ss_pred CchHHHHHHHHHHhC
Q 038673 393 MWDDVSRVRRLLKMT 407 (548)
Q Consensus 393 ~~~~a~~~~~~m~~~ 407 (548)
+.+.+..+.+++.+.
T Consensus 478 ~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 478 DLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=6.8e-16 Score=149.31 Aligned_cols=259 Identities=10% Similarity=-0.079 Sum_probs=217.7
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+...+...|+++.|...++.+++.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHH
Confidence 55678888999999999999999999998853 3367788889999999999999999999999986 77888999999
Q ss_pred HHHHHcCChHHHHHHHccCCC--C-CeehHHHH--------------HH-HHHhCCChHHHHHHHccCC---CCChhHHH
Q 038673 96 GMYVKCGFLGCSRKVFDEMPE--R-DVVSWTEL--------------IV-AYANNGDMESAGGLFNELP---LKDKVAWT 154 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~f~~m~---~~~~~~~~ 154 (548)
..|...|++++|.+.|+++.+ | +...+..+ .. .+...|++++|...|+++. +.+...+.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 176 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA 176 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Confidence 999999999999999988754 2 22333333 22 3777889999999998865 34678999
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
.+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+.... +..++..+...|.+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG---YVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHH
Confidence 99999999999999999999998764 446778889999999999999999999999887644 78899999999999
Q ss_pred CCCHHHHHHHHhcCCC--C-------------ChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 235 CGSIDDAYRIFVGMKQ--R-------------NVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 235 ~g~~~~A~~~~~~~~~--~-------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
.|++++|.+.|+++.+ | +...|..+...+...|+.++|..++++..+
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999988753 2 367889999999999999999999876543
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=4.6e-17 Score=171.13 Aligned_cols=146 Identities=10% Similarity=0.084 Sum_probs=121.3
Q ss_pred ehHHHHHHHHHhCCChHHHHHHHccCC-------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 038673 120 VSWTELIVAYANNGDMESAGGLFNELP-------LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVI 192 (548)
Q Consensus 120 ~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 192 (548)
.|||+||.+|++.|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|...|+.||.+||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 478999999999999999999986653 6899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCh-hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CChhhhHHHHHHHHhc
Q 038673 193 SACAQLGVI-KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RNVFSYSSMILGFAMH 266 (548)
Q Consensus 193 ~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~ 266 (548)
.++++.|.. +.|.+++++|.+.|+.| |..+|++++..+.+.+-++...+++..+.. +.+.+.+.|.+.|.+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~P--D~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKL--QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCS--HHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCC--ChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 999999985 78999999999999996 999999999888877666666555544442 1233445555666655
Q ss_pred C
Q 038673 267 G 267 (548)
Q Consensus 267 g 267 (548)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=8.2e-17 Score=169.21 Aligned_cols=120 Identities=12% Similarity=0.052 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHH---CCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQY---AGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGS 226 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 226 (548)
..|||+||.+|++.|+.++|.++|++|.+ .|+.||.+||++||.+|++.|++++|.++|++|.+.|+.| |..+||
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P--DvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP--DLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC--CHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--cHHHHH
Confidence 45899999999999999999999988764 5788999999999999999999999999999999999885 555555
Q ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcC
Q 038673 227 ALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGR-AHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302 (548)
Q Consensus 227 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 302 (548)
+|| .++++.|+ .++|.++|++|.+.|+.||.+||++++.++.+.+
T Consensus 205 tLI-------------------------------~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 205 AAL-------------------------------QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHH-------------------------------HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHH-------------------------------HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 555 45555554 3455666666666666666666665444444433
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.65 E-value=3.1e-13 Score=146.66 Aligned_cols=333 Identities=13% Similarity=0.092 Sum_probs=213.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRREGI--GPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGM 97 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 97 (548)
-...+++|...|.+.+|++++++....+- .-+...-+.++....+. +...+.......- ......+...
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--------~~d~~eIA~I 1058 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--------NYDAPDIANI 1058 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--------hccHHHHHHH
Confidence 35667888899999999999999884321 01223344455555444 4555555544432 1224446677
Q ss_pred HHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 038673 98 YVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQ 177 (548)
Q Consensus 98 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 177 (548)
+...|.+++|..+|++... .....+.++ -..|++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1059 ai~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 7788888888888888642 111122222 26778888888887663 4677888888888888888888888553
Q ss_pred HCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhH
Q 038673 178 YAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYS 257 (548)
Q Consensus 178 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 257 (548)
-|...|..++.+|.+.|+++++.+++....+... ++.+.+.++.+|++.+++++...+. ..++...|.
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~----e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~ 1199 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR----ESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQ 1199 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc----cccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHH
Confidence 3666778888888888888888888888777652 2233345888888888888655443 345666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC-----ccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 258 SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-----KCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 258 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
.+...|...|++++|..+|.... .|..+...+.+.|. ...+-..+..+|..+..++...|++..|.
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA~---------ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhh---------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHH
Confidence 78888888888888888888742 34444444444432 11111123445555555555555555555
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 038673 333 KMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASA 391 (548)
Q Consensus 333 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 391 (548)
.....+. .++..+..++..|...|.+++|..+++..+.++|.+...|.-|+.+|++-
T Consensus 1271 ~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1271 MCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 5544322 23344446666666777777777777777777766666666666666654
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=4.6e-14 Score=131.31 Aligned_cols=226 Identities=12% Similarity=0.009 Sum_probs=187.7
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-Ch---HhHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPI-NN---VVVG 225 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~---~~~~ 225 (548)
...|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+...... .. ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888889999999999999999988876 6777888888999999999999999998877543200 01 6888
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCcc
Q 038673 226 SALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKC 305 (548)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 305 (548)
..+...|.+.|++++|...|+++.+.+.. ...+...|++++|+..++++... .|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~------------------ 137 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPE------------------ 137 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHH------------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--Ccc------------------
Confidence 99999999999999999999887642211 24566778899999999998873 333
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 038673 306 YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYII 383 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 383 (548)
+...+..+...+...|++++|...+++.. ..| +..+|..+...+...|+++.|...++++++..|+++..+..
T Consensus 138 -----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 212 (258)
T 3uq3_A 138 -----KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212 (258)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 33567888899999999999999999874 334 57888888899999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhC
Q 038673 384 LSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 384 l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
++.+|...|++++|.+.+++..+.
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999988653
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.59 E-value=1.3e-12 Score=141.91 Aligned_cols=355 Identities=13% Similarity=0.084 Sum_probs=266.8
Q ss_pred cchHHHhccCCC-C-----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHH
Q 038673 3 SFPRLVFEQVKY-K-----NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHA 76 (548)
Q Consensus 3 ~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~ 76 (548)
.+|.++++++.- | +....|.++....+. +..+..+..++... .....+...+...|.+++|..+|+
T Consensus 1002 ~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYk 1073 (1630)
T 1xi4_A 1002 NELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFR 1073 (1630)
T ss_pred HHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHH
Confidence 456777766552 2 335677788877777 55666666665542 113447778889999999999998
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHH
Q 038673 77 QTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAM 156 (548)
Q Consensus 77 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l 156 (548)
... ......+.++. ..|++++|.++.++.. +..+|..+..++...|++++|.+.|.+. .|...|..+
T Consensus 1074 Ka~------~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eV 1140 (1630)
T 1xi4_A 1074 KFD------VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEV 1140 (1630)
T ss_pred HcC------CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHH
Confidence 852 12222333332 7789999999998774 4678999999999999999999999764 688889999
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCC
Q 038673 157 VTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 157 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g 236 (548)
+..+.+.|++++|.++|...++.. ++....+.++.+|++.++++....+. + . .+...+..+.+.|...|
T Consensus 1141 a~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~--~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1141 VQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G--PNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C--CCHHHHHHHHHHHHhcC
Confidence 999999999999999999877653 34333445888999999888644442 1 2 25566777999999999
Q ss_pred CHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC------ccCCCCc
Q 038673 237 SIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL------KCYGVSP 310 (548)
Q Consensus 237 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~------~~~~~~p 310 (548)
++++|..+|..+ ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|. ...++..
T Consensus 1210 ~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv 1278 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 1278 (1630)
T ss_pred CHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc
Confidence 999999999996 48999999999999999999999987 345788877778866654 2223556
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhc--CCHHHHHHHHHHHhhcCC-----CCchhH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIH--RNPEIAQIAANHLFELEP-----DKIGNY 381 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~ 381 (548)
++..+..++..|.+.|.+++|+.+++..- +.|. ...|.-|..++.+. ++..++.+.|..-..+.| .+...|
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW 1358 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLW 1358 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHH
Confidence 78889999999999999999999997663 4443 44555555555554 344555556655554544 456689
Q ss_pred HHHHHHHHHcCCchHHHHH
Q 038673 382 IILSNIYASAGMWDDVSRV 400 (548)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~ 400 (548)
.-++..|.+.|+|+.|..+
T Consensus 1359 ~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1359 AELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHhcccHHHHHHH
Confidence 9999999999999999854
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=6.5e-14 Score=127.18 Aligned_cols=207 Identities=13% Similarity=0.020 Sum_probs=134.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++..+. +...+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR---YLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Confidence 44455555556666666666666666555432 224444555555555556666666666555555433 44455555
Q ss_pred HHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCC
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGV 308 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 308 (548)
...|.+.+. .. .+ .+...|++++|+..|++..+ +.|+
T Consensus 80 g~~~~~~~~---------~~--~~---------~~~~~g~~~~A~~~~~~al~--~~P~--------------------- 116 (217)
T 2pl2_A 80 SEAYVALYR---------QA--ED---------RERGKGYLEQALSVLKDAER--VNPR--------------------- 116 (217)
T ss_dssp HHHHHHHHH---------TC--SS---------HHHHHHHHHHHHHHHHHHHH--HCTT---------------------
T ss_pred HHHHHHhhh---------hh--hh---------hcccccCHHHHHHHHHHHHH--hCcc---------------------
Confidence 444443210 00 00 11223999999999999988 4555
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 309 SPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
+...+..+..+|...|++++|+..|++.. +..+...|..+..++...|++++|...++++++.+|+++..+..++.+
T Consensus 117 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 194 (217)
T 2pl2_A 117 --YAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA 194 (217)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34568888899999999999999998873 226788899999999999999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHH
Q 038673 388 YASAGMWDDVSRVRRLL 404 (548)
Q Consensus 388 ~~~~g~~~~a~~~~~~m 404 (548)
+...|++++|.+.+++.
T Consensus 195 ~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 195 LLLKGKAEEAARAAALE 211 (217)
T ss_dssp HTC--------------
T ss_pred HHHccCHHHHHHHHHHH
Confidence 99999999999988754
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=2.4e-13 Score=127.74 Aligned_cols=243 Identities=13% Similarity=-0.020 Sum_probs=182.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHH
Q 038673 121 SWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD--YVTLVGVISAC 195 (548)
Q Consensus 121 ~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~ 195 (548)
.+......+...|++++|...|++.. +.+...|..+...|...|++++|+..|++....+-.|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 44455666777777777777777653 33566888999999999999999999999987432222 22378888899
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHH
Q 038673 196 AQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAA 272 (548)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 272 (548)
...|++++|...++.+.+.... +..++..+...|...|++++|...|++..+ .+...|..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT---RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987655 778999999999999999999999999875 3556777777344445699999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCC---HHHHHHHHHhCC----CCCCh-
Q 038673 273 IQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGC---LEEALKMVEKMP----VEPNG- 344 (548)
Q Consensus 273 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~----~~p~~- 344 (548)
++.|+++.+. .|+. ...+..+...+...|+ +++|...+++.. ..|+.
T Consensus 162 ~~~~~~a~~~--~p~~-----------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 216 (272)
T 3u4t_A 162 DSSFVKVLEL--KPNI-----------------------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216 (272)
T ss_dssp HHHHHHHHHH--STTC-----------------------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG
T ss_pred HHHHHHHHHh--Cccc-----------------------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc
Confidence 9999999883 4442 3445566667776676 666666666552 12332
Q ss_pred -----hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 038673 345 -----GVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASA 391 (548)
Q Consensus 345 -----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 391 (548)
.+|..+...+...|+++.|...++++++++|+++.+...+.......
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 46777778899999999999999999999999987777666555443
No 39
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=4.3e-13 Score=137.00 Aligned_cols=328 Identities=9% Similarity=-0.081 Sum_probs=209.9
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHC-----C-CCC-ChhhHHHHHHHhhc--cCCcHHHHHHHHHHHHhCCCCC
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRRE-----G-IGP-VSFTLSALFKACTE--VLDVSLGQQIHAQTILLGGFTS 86 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~~ 86 (548)
..++|+.+...|...|++++|...|++..+. + ..+ ...++.....++.. .+++++|...|+.+++.. |.
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~ 170 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PK 170 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CC
Confidence 4578999999999999999999999887652 1 112 23456655555544 356899999999999986 56
Q ss_pred ChhHHHHHHHHH---HHcCChHHHHHHHccCCC---CCeehHHHHHHHHHh----CCChHHHHHHHccCC---CCChhHH
Q 038673 87 DLYVGNTMIGMY---VKCGFLGCSRKVFDEMPE---RDVVSWTELIVAYAN----NGDMESAGGLFNELP---LKDKVAW 153 (548)
Q Consensus 87 ~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~---~~~~~~~ 153 (548)
++..+..+..++ ...++.++|.+.|++..+ .+..++..+...+.. .|++++|.+.+++.. +.+..++
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~ 250 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH
Confidence 677777666654 445777788888776543 345556555555444 467889999988754 4567889
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc-------------------CChhHHHHHHHHHHHc
Q 038673 154 TAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQL-------------------GVIKYANWVCEIAEGS 214 (548)
Q Consensus 154 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-------------------g~~~~a~~~~~~~~~~ 214 (548)
..+...|...|++++|+..|++..+.. +-+..++..+..++... +..+.|...++.+.+.
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 999999999999999999999988753 33445555555444321 2356777888888776
Q ss_pred CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CChh----hhHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 038673 215 GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNVF----SYSSMIL-GFAMHGRAHAAIQLFGDMVKTETKPN 287 (548)
Q Consensus 215 ~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~ 287 (548)
.+. +..++..+...|.+.|++++|...|++..+ ++.. .+..+.. .+...|+.++|+..|++..+ +.|+
T Consensus 330 ~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~ 404 (472)
T 4g1t_A 330 NDN---LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQK 404 (472)
T ss_dssp CTT---TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCC
T ss_pred CCc---hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcc
Confidence 644 778889999999999999999999998753 3322 1222222 34567999999999999887 5555
Q ss_pred HhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CChhHHHHHHHHHHhcCCHHHHHH
Q 038673 288 GVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM-PVE-PNGGVWGALLGACQIHRNPEIAQI 365 (548)
Q Consensus 288 ~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~a~~ 365 (548)
..... +....+.+++++. ... .+..+|..+-..+...|++++|.+
T Consensus 405 ~~~~~---------------------------------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 405 SREKE---------------------------------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp CHHHH---------------------------------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred cHHHH---------------------------------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 33211 1112222333322 123 357889999999999999999999
Q ss_pred HHHHHhhcCCCCchhHHHH
Q 038673 366 AANHLFELEPDKIGNYIIL 384 (548)
Q Consensus 366 ~~~~~~~~~p~~~~~~~~l 384 (548)
.+++++++.|.+|.+...+
T Consensus 452 ~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 452 DSERGLESGSLIPSASSWN 470 (472)
T ss_dssp -------------------
T ss_pred HHHHHHhcCCCCCcHhhcC
Confidence 9999999998887665544
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=2.2e-12 Score=119.64 Aligned_cols=203 Identities=14% Similarity=0.053 Sum_probs=155.4
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.... +..++..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR---NARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---cHHHHHHHH
Confidence 5677888888888889999998888887653 345667778888888888888888888888877644 777888888
Q ss_pred HHHhcCCCHHHHHHHHhcCCC----C-ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQ----R-NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
..|.+.|++++|.+.|+++.+ | +...|..+...|...|++++|+..|+++.+. .|+
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~----------------- 173 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRN----------------- 173 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC-----------------
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--Ccc-----------------
Confidence 888888888888888887765 2 3456777778888888888888888888763 232
Q ss_pred cCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 305 CYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
+...+..+...|...|++++|...+++.. ..| +...+..+...+...|+.+.|...++++.+..|+++...
T Consensus 174 ------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 174 ------QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred ------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 23456777788888888888888887763 333 456667777778888888888888888888888876443
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=3.6e-13 Score=126.63 Aligned_cols=238 Identities=7% Similarity=-0.183 Sum_probs=181.1
Q ss_pred hCCChHHHHHHHccCCCC-------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhH
Q 038673 131 NNGDMESAGGLFNELPLK-------DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKY 203 (548)
Q Consensus 131 ~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 203 (548)
..|++++|...|+++... +..+|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777665432 45678888999999999999999999988764 4467788888999999999999
Q ss_pred HHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 204 ANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 204 a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
|...++.+.+..+. +..++..+...|.+.|++++|...|+++.+ |+.......+..+...|++++|+..+++...
T Consensus 96 A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc---ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999887644 778899999999999999999999998863 4444444455556777999999999988877
Q ss_pred cCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-----hhHHHHHHHHHH
Q 038673 282 TETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-----GGVWGALLGACQ 355 (548)
Q Consensus 282 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~ 355 (548)
. .+++. ..+ .++..+...++.++|.+.+++.. ..|+ ..+|..+...+.
T Consensus 173 ~-~~~~~------------------------~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 226 (275)
T 1xnf_A 173 K-SDKEQ------------------------WGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL 226 (275)
T ss_dssp H-SCCCS------------------------THH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred c-CCcch------------------------HHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence 4 12221 122 35566777788899999998764 2232 467788889999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 038673 356 IHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 356 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 401 (548)
..|++++|...++++++.+|++...+ ..++...|++++|.+.+
T Consensus 227 ~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 227 SLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 99999999999999999999875443 55677888888887665
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=5e-13 Score=124.20 Aligned_cols=223 Identities=10% Similarity=-0.091 Sum_probs=157.4
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCC-CCCC----hhHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGG-FTSD----LYVG 91 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~ 91 (548)
...|..+...+...|++++|+..|++..+.. ++..++..+...+...|++++|...++.+++..+ ..++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3468888889999999999999999998876 7788888899999999999999999998887540 1112 5677
Q ss_pred HHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHH
Q 038673 92 NTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIE 171 (548)
Q Consensus 92 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 171 (548)
..+...|.+.|++++|...|++..+.+ ++ ...+...|++++|..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------------~~-------~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH-----------------------------RT-------ADILTKLRNAEKELK 126 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------CC-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-----------------------------ch-------hHHHHHHhHHHHHHH
Confidence 788888888888888888876654311 11 123444556666666
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-
Q 038673 172 YFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ- 250 (548)
Q Consensus 172 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 250 (548)
.++++.... +.+...+..+...+...|++++|...++.+.+.... +..++..+...|.+.|++++|...|++..+
T Consensus 127 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 127 KAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 666666542 223445556666666777777777777777665533 666777777777777777777777776652
Q ss_pred --CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 251 --RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 251 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
.+...|..+...|...|++++|...|++..+
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456677777777778888888887777766
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=3.5e-12 Score=115.77 Aligned_cols=206 Identities=11% Similarity=-0.047 Sum_probs=151.6
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.... +..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD---SAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChHHHHHH
Confidence 45677788888888888888888888877653 345667777888888888888888888888776544 67778888
Q ss_pred HHHHhcC-CCHHHHHHHHhcCCC--CC---hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcC
Q 038673 229 IDMYSKC-GSIDDAYRIFVGMKQ--RN---VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302 (548)
Q Consensus 229 i~~y~~~-g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 302 (548)
...|... |++++|...|+++.+ .+ ...|..+...+...|++++|+..|+++.+. .|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~--------------- 145 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQ--------------- 145 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT---------------
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------------
Confidence 8888888 888888888877654 22 456777777888888888888888887763 232
Q ss_pred CccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 303 LKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP--NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 303 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
+...+..+...+.+.|++++|.+.+++.. ..| +...+..+...+...|+.+.+...++.+.+..|+++.
T Consensus 146 --------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 146 --------FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp --------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred --------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 23456677777888888888888887763 233 4556666667777888888888888888877887765
Q ss_pred hHHH
Q 038673 380 NYII 383 (548)
Q Consensus 380 ~~~~ 383 (548)
....
T Consensus 218 ~~~~ 221 (225)
T 2vq2_A 218 LQTV 221 (225)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=5.1e-13 Score=131.53 Aligned_cols=242 Identities=11% Similarity=0.005 Sum_probs=195.7
Q ss_pred ehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCC-hhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038673 120 VSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAK-PREAIEYFERMQYAGVETDYVTLVGVISAC 195 (548)
Q Consensus 120 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 195 (548)
..|+.+...+.+.|++++|+..|++.. ..+...|+.+...+...|+ +++|+..|++..... +-+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 457777777888888888888888764 4467889999999999996 999999999988764 33667788888889
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHh-cCCHHH
Q 038673 196 AQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAM-HGRAHA 271 (548)
Q Consensus 196 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-~g~~~~ 271 (548)
...|++++|...++.+++.... +..+|..+..+|.+.|++++|...|+++.+ .+...|+.+...+.. .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~---~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK---NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999988755 889999999999999999999999998874 466789988888888 666577
Q ss_pred H-----HHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcC--CHHHHHHHHHhCCCCCC-
Q 038673 272 A-----IQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAG--CLEEALKMVEKMPVEPN- 343 (548)
Q Consensus 272 A-----~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~- 343 (548)
| +..|++.+. +.|+ +...|..+..+|...| ++++|++.++++...|+
T Consensus 254 A~~~~el~~~~~Al~--l~P~-----------------------~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~ 308 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPH-----------------------NESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSS 308 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTT-----------------------CHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHH--HCCC-----------------------CHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCC
Confidence 7 588888887 4555 3456777888888877 68999999988765555
Q ss_pred hhHHHHHHHHHHhcC---------CHHHHHHHHHHH-hhcCCCCchhHHHHHHHHHH
Q 038673 344 GGVWGALLGACQIHR---------NPEIAQIAANHL-FELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 344 ~~~~~~ll~~~~~~~---------~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 390 (548)
...+..+...+...| ..++|..+++++ .+++|.....|..++..+..
T Consensus 309 ~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 309 PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 667777878887764 258999999999 89999999888888776654
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=2.9e-13 Score=122.86 Aligned_cols=206 Identities=11% Similarity=-0.054 Sum_probs=143.1
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHH
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNT 93 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (548)
++...|..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...++..++.. |.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 46677888888888999999999999988874 34 56778888888888899999999999888875 667778888
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHH
Q 038673 94 MIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAI 170 (548)
Q Consensus 94 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 170 (548)
+..+|.+.+.. . .+ .+...|++++|...|++.. +.+...|..+...|...|++++|+
T Consensus 79 lg~~~~~~~~~---------~--~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 79 LSEAYVALYRQ---------A--ED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHHHHHHT---------C--SS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhh---------h--hh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH
Confidence 88887776100 0 00 0011244444444444432 335677888888888999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 171 EYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 171 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
..|++..+.. .+...+..+..++...|++++|...++.+.+..+. +..++..+...|.+.|++++|...|++..
T Consensus 139 ~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 139 ASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK---DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9998888776 67778888888888999999999999988887644 78888888888999999999888887653
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=4.4e-13 Score=123.54 Aligned_cols=210 Identities=12% Similarity=0.057 Sum_probs=133.6
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
....|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.... +..++..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS---AATAYYGA 97 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---chHHHHHH
Confidence 44567777777788888888888888877643 345666777777778888888888888887776543 67777777
Q ss_pred HHHHhcCCCHHHHHHHHhcCC---CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCcc
Q 038673 229 IDMYSKCGSIDDAYRIFVGMK---QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKC 305 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 305 (548)
...|...|++++|.+.|+++. ..+...|..+...+...|++++|+..++++.+. .|+
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~------------------ 157 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NEN------------------ 157 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTT------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCc------------------
Confidence 788888888888887777664 245566777777777888888888888777763 222
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 038673 306 YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYII 383 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 383 (548)
+...+..+...+.+.|++++|.+.+++.. ..| +..+|..+...+...|+++.|...++++++..|+++..+..
T Consensus 158 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 158 -----DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp -----CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 23456667777777777777777777653 223 36667777777777788888888888887777777766555
Q ss_pred HHHH
Q 038673 384 LSNI 387 (548)
Q Consensus 384 l~~~ 387 (548)
+..+
T Consensus 233 ~~~l 236 (243)
T 2q7f_A 233 KKLL 236 (243)
T ss_dssp HTC-
T ss_pred HHHH
Confidence 5433
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=3.3e-12 Score=118.46 Aligned_cols=198 Identities=11% Similarity=-0.089 Sum_probs=172.5
Q ss_pred HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHH
Q 038673 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMIL 261 (548)
Q Consensus 185 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 261 (548)
...+..+...+...|++++|...++.+.+.... +..++..+...|.+.|++++|.+.|+++.+ .+...|..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHH
Confidence 456777888899999999999999999987644 788999999999999999999999998763 46778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V 340 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 340 (548)
.|...|++++|++.|+++...+..|+ +...+..+...|...|++++|.+.+++.. .
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPE-----------------------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTT-----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcc-----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999987333444 23457788899999999999999998874 3
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 341 EP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 341 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
.| +...|..+...+...|+++.|...++++.+..|++...+..++.+|...|++++|.++++++.+..
T Consensus 171 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34 477888888999999999999999999999999999999999999999999999999999987643
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=2.3e-13 Score=127.95 Aligned_cols=243 Identities=9% Similarity=-0.077 Sum_probs=145.4
Q ss_pred hCCCchHHHHHHHHHHHCCCC--C-ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChH
Q 038673 29 LQGHLKDSISLYCSMRREGIG--P-VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLG 105 (548)
Q Consensus 29 ~~g~~~~A~~~~~~m~~~g~~--p-~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 105 (548)
..|++++|+..|+++.+.... | +..++..+...+...|++++|...++.+++.. +.+..++..+..+|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 457889999999999875321 1 45677888888889999999999999999875 667888889999999999999
Q ss_pred HHHHHHccCCC---CCeehHHHHHHHHHhCCChHHHHHHHccCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC
Q 038673 106 CSRKVFDEMPE---RDVVSWTELIVAYANNGDMESAGGLFNELP--LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAG 180 (548)
Q Consensus 106 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 180 (548)
+|.+.|++..+ .+..+|..+...|.+.|++++|...|+++. .|+.......+..+...|++++|+..+++.....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99988877653 244556666666666666666666665543 2222222223333344466666666665554432
Q ss_pred CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC--CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHH
Q 038673 181 VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFG--PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSS 258 (548)
Q Consensus 181 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 258 (548)
+++... ..++..+...++.++|...+..+.+.... | .+..++..+...|.+.|++++|...|+++.+.++..+..
T Consensus 175 -~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 175 -DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAE-HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccc-cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 222222 22444445555555555555555433211 0 013555556666666666666666666555444444444
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 038673 259 MILGFAMHGRAHAAIQLF 276 (548)
Q Consensus 259 li~~~~~~g~~~~A~~l~ 276 (548)
...++...|++++|++-+
T Consensus 252 ~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 444555555555555443
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=8.2e-12 Score=113.24 Aligned_cols=198 Identities=11% Similarity=-0.049 Sum_probs=171.7
Q ss_pred CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHH
Q 038673 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMI 260 (548)
Q Consensus 184 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 260 (548)
+...+..+...+...|++++|.+.++.+.+.... +..++..+...|...|++++|.+.|+++.+ .+..+|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 4556778888899999999999999999987644 788999999999999999999999998763 4677899999
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 261 LGFAMH-GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 261 ~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
..|... |++++|+..++++.+.+..|+ +...+..+...+...|++++|.+.++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPT-----------------------PYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSC-----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcc-----------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999 999999999999988323333 23567888899999999999999998874
Q ss_pred -CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 340 -VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEP-DKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 340 -~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
..|+ ...|..+...+...|++++|...++++.+..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 141 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 141 AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 3444 77888888999999999999999999999999 88889999999999999999999999988654
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=1.4e-12 Score=128.38 Aligned_cols=228 Identities=10% Similarity=0.019 Sum_probs=193.9
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC-hhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGV-IKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
+...|+.+...+.+.|++++|+..|++..... +-+...|..+..++...|+ +++|...++.+++..+. +..+|..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---~~~a~~~ 171 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---NYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 45678899999999999999999999998763 3356778888999999996 99999999999998865 8999999
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
+..+|.+.|++++|...|+++.+ .+...|..+..++...|++++|+..|+++++ +.|+
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~----------------- 232 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVR----------------- 232 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTT-----------------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCC-----------------
Confidence 99999999999999999998874 5778999999999999999999999999998 4454
Q ss_pred cCCCCcCHHHHHHHHHHHHH-cCCHHHH-----HHHHHhCC-CCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHHHhhcC
Q 038673 305 CYGVSPSTDHYACMVDLLGR-AGCLEEA-----LKMVEKMP-VEPN-GGVWGALLGACQIHR--NPEIAQIAANHLFELE 374 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~-~~p~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~ 374 (548)
+...|+.+..+|.+ .|..++| ++.+++.. +.|+ ...|..+...+...| +.++|...++++ +.+
T Consensus 233 ------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~ 305 (382)
T 2h6f_A 233 ------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS 305 (382)
T ss_dssp ------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred ------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence 44568888888888 6665777 46666653 5565 778888888888888 689999999998 899
Q ss_pred CCCchhHHHHHHHHHHcC---------CchHHHHHHHHH-Hh
Q 038673 375 PDKIGNYIILSNIYASAG---------MWDDVSRVRRLL-KM 406 (548)
Q Consensus 375 p~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~m-~~ 406 (548)
|+++..+..|+.+|.+.| .+++|.++++++ .+
T Consensus 306 p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 306 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 258999999988 44
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=2.2e-12 Score=118.70 Aligned_cols=197 Identities=9% Similarity=0.007 Sum_probs=155.8
Q ss_pred CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHH
Q 038673 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMI 260 (548)
Q Consensus 184 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 260 (548)
...++..+...+...|++++|...++.+.+.... +..++..+...|.+.|++++|.+.|+++.+ .+...|..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE---DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 4456777778888999999999999999986644 788999999999999999999999998763 4677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-
Q 038673 261 LGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP- 339 (548)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 339 (548)
..|...|++++|++.++++.+. .|+ +...+..+...+.+.|++++|.+.++++.
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 153 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GME-----------------------NGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCC-----------------------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCC-----------------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999999874 233 34567888899999999999999999874
Q ss_pred CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 340 VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 340 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
..| +...+..+...+...|+++.|...++++.+..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 154 LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 334 577888888999999999999999999999999999999999999999999999999999987643
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=8.7e-12 Score=117.00 Aligned_cols=232 Identities=13% Similarity=-0.035 Sum_probs=185.7
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALID 230 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~ 230 (548)
..+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....|......+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 455667788999999999999999998763 3345578888889999999999999999999854333233556899999
Q ss_pred HHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 231 MYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 231 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
.|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+..|++..+. .|+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~-------------------- 140 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTT-------------------- 140 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCC--------------------
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCC--------------------
Confidence 99999999999999998763 46678999999999999999999999998773 444
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHHhhcC---CCC--
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRN---PEIAQIAANHLFELE---PDK-- 377 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~---p~~-- 377 (548)
+...+..+...+...+++++|.+.|++.. ..|+ ...+..+...+...++ .+.|...++++++.. |+.
T Consensus 141 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 217 (272)
T 3u4t_A 141 ---DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217 (272)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGH
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccch
Confidence 33456666633334569999999998874 4455 6677777788888888 888999999988854 442
Q ss_pred ---chhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 378 ---IGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 378 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
...|..++..|...|++++|.+.+++..+..
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 218 DELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2578889999999999999999999987643
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=7.8e-12 Score=126.75 Aligned_cols=345 Identities=10% Similarity=-0.032 Sum_probs=236.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCc---HHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 038673 23 LIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDV---SLGQQIHAQTILLGGFTSDLYVGNTMIGMYV 99 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 99 (548)
+...+.+.|++++|+++|++..+.| +..++..+...+...|+. ++|...++...+. ++..+..|..++.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHH
Confidence 5566778899999999999998876 333444455555566776 8899998887642 5666777777555
Q ss_pred HcC-----ChHHHHHHHccCCC-CCeehHHHHHHHHHhCCChHHH---HHHHccCC-CCChhHHHHHHHHHHHCCChhHH
Q 038673 100 KCG-----FLGCSRKVFDEMPE-RDVVSWTELIVAYANNGDMESA---GGLFNELP-LKDKVAWTAMVTGYVQNAKPREA 169 (548)
Q Consensus 100 ~~g-----~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A---~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A 169 (548)
..| +.++|...|++..+ .+...+..|...|...+..+++ .+.+.... ..+...+..+...|...+.++++
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 555 77899999988765 3556788888888877664443 33333322 23567888888889888866665
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHccC---ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcC----CCHHHHH
Q 038673 170 IEYFERMQYAGVETDYVTLVGVISACAQLG---VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKC----GSIDDAY 242 (548)
Q Consensus 170 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~----g~~~~A~ 242 (548)
......+.+.-...+...+..+...+...| +.++|...++...+.|.. +...+..|..+|... +++++|.
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~---~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV---TAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 555443333212223337778888888899 899999999999999865 666667888888766 7999999
Q ss_pred HHHhcCCCCChhhhHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHH
Q 038673 243 RIFVGMKQRNVFSYSSMILG-F--AMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMV 319 (548)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li 319 (548)
+.|++....++..+..+... | ...++.++|+..|++..+.| +...+..|.
T Consensus 238 ~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---------------------------~~~A~~~Lg 290 (452)
T 3e4b_A 238 ALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---------------------------QPRAELLLG 290 (452)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHH
Confidence 99998884466777777776 4 46899999999999998764 234455666
Q ss_pred HHHHHcC-----CHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 320 DLLGRAG-----CLEEALKMVEKMPVEPNGGVWGALLGACQI----HRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 320 ~~~~~~g-----~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
.+|. .| ++++|.+.|++.. .-++..+..|-..|.. ..+.++|...+++..+ +.++.....|+.+|..
T Consensus 291 ~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 291 KLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQ 366 (452)
T ss_dssp HHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred HHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHh
Confidence 6666 45 9999999999998 5557777777666665 3499999999999886 3456688899999885
Q ss_pred ----cCCchHHHHHHHHHHhCCC
Q 038673 391 ----AGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 391 ----~g~~~~a~~~~~~m~~~g~ 409 (548)
..+.++|...++...+.|.
T Consensus 367 G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC
Confidence 3578999999999887775
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=6.1e-11 Score=111.50 Aligned_cols=224 Identities=13% Similarity=-0.012 Sum_probs=177.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCChHhH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQ----LGVIKYANWVCEIAEGSGFGPINNVVV 224 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~ 224 (548)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHH
Confidence 56677778888888888888888888887733 44566777777777 888888888888888764 5567
Q ss_pred HHHHHHHHhc----CCCHHHHHHHHhcCCC-CChhhhHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 225 GSALIDMYSK----CGSIDDAYRIFVGMKQ-RNVFSYSSMILGFAM----HGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 225 ~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
+..+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------------ 144 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN------------ 144 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC------------
Confidence 7788888888 8888888888887654 466778888888888 899999999999888753
Q ss_pred HHHhhcCCccCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHH
Q 038673 296 TACSHVGLKCYGVSPSTDHYACMVDLLGR----AGCLEEALKMVEKMPVEPNGGVWGALLGACQI----HRNPEIAQIAA 367 (548)
Q Consensus 296 ~a~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~ 367 (548)
+...+..+...|.. .+++++|...|++..-..+...+..+-..+.. .+++++|...+
T Consensus 145 ---------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 209 (273)
T 1ouv_A 145 ---------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY 209 (273)
T ss_dssp ---------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 22345666677777 88999999998876422356777777788888 89999999999
Q ss_pred HHHhhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 038673 368 NHLFELEPDKIGNYIILSNIYAS----AGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 368 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 409 (548)
++..+..| +..+..|+.+|.. .|++++|.+.+++..+.|.
T Consensus 210 ~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 210 SKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 99988766 5688889999998 8999999999998887664
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=6e-12 Score=125.41 Aligned_cols=297 Identities=13% Similarity=0.011 Sum_probs=190.5
Q ss_pred hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHH
Q 038673 52 SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSD----LYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIV 127 (548)
Q Consensus 52 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 127 (548)
...+......+...|++++|...++.+++.. +.+ ..++..+...|...|++++|...|++.
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------- 73 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD------------- 73 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-------------
Confidence 3344445555666666666666666666654 223 245666667777777777777764432
Q ss_pred HHHhCCChHHHHHHHccCCCC--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHccCC
Q 038673 128 AYANNGDMESAGGLFNELPLK--DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETD----YVTLVGVISACAQLGV 200 (548)
Q Consensus 128 ~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~ 200 (548)
..+......+ ...++..+...|...|++++|+..+++...... .++ ..++..+...+...|+
T Consensus 74 -----------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 74 -----------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 2222222211 234566666666677777777766666543210 011 2355566666667777
Q ss_pred --------------------hhHHHHHHHHHHHc----CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----C
Q 038673 201 --------------------IKYANWVCEIAEGS----GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----R 251 (548)
Q Consensus 201 --------------------~~~a~~~~~~~~~~----~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~ 251 (548)
+++|...+....+. +..| ....++..+...|...|++++|...|++..+ +
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRA-AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 77777777665432 2222 3456777888888888888888888877652 2
Q ss_pred C----hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcC
Q 038673 252 N----VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK-PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAG 326 (548)
Q Consensus 252 ~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g 326 (548)
+ ..+|..+...|...|++++|+..+++....... ++.. ....++..+...|...|
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------~~~~~~~~la~~~~~~g 281 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--------------------VEAQSCYSLGNTYTLLQ 281 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------------HHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch--------------------HHHHHHHHHHHHHHHhC
Confidence 2 236788888899999999999999887753110 1110 01346778888999999
Q ss_pred CHHHHHHHHHhCC----CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CCchhHHHHHHHHHHcC
Q 038673 327 CLEEALKMVEKMP----VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEP------DKIGNYIILSNIYASAG 392 (548)
Q Consensus 327 ~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g 392 (548)
++++|.+.+++.. ..++ ..++..+...+...|+++.|...+++.+++.+ ....++..++.+|...|
T Consensus 282 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 282 DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 9999999988762 1122 45677777889999999999999999888422 23456778888888887
Q ss_pred Cch
Q 038673 393 MWD 395 (548)
Q Consensus 393 ~~~ 395 (548)
+..
T Consensus 362 ~~~ 364 (406)
T 3sf4_A 362 LSY 364 (406)
T ss_dssp TTS
T ss_pred HhH
Confidence 754
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=3.9e-11 Score=112.81 Aligned_cols=223 Identities=12% Similarity=-0.021 Sum_probs=168.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038673 121 SWTELIVAYANNGDMESAGGLFNELPL-KDKVAWTAMVTGYVQ----NAKPREAIEYFERMQYAGVETDYVTLVGVISAC 195 (548)
Q Consensus 121 ~~~~li~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 195 (548)
++..+...|...|++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 344444555555555555555555443 355677778888888 888888888888887765 566777777778
Q ss_pred Hc----cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc----CCCHHHHHHHHhcCCC-CChhhhHHHHHHHHh-
Q 038673 196 AQ----LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK----CGSIDDAYRIFVGMKQ-RNVFSYSSMILGFAM- 265 (548)
Q Consensus 196 ~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~- 265 (548)
.. .+++++|...++...+.+ +...+..+..+|.+ .+++++|...|++..+ .+...+..+...|..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG 159 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC-----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC
Confidence 77 888888888888888764 56677888888888 8889999888887664 356677777778887
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhC
Q 038673 266 ---HGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGR----AGCLEEALKMVEKM 338 (548)
Q Consensus 266 ---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 338 (548)
.+++++|+..|++..+.+ +...+..+..+|.. .+++++|.+.|++.
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~---------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLK---------------------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 889999999999887742 23456677788888 89999999999876
Q ss_pred CCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCc
Q 038673 339 PVEPNGGVWGALLGACQI----HRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 339 ~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
....+...+..+-..+.. .+++++|...+++..+..|++.
T Consensus 213 ~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 213 CELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 422336677777788888 8999999999999999888653
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=1.5e-12 Score=130.43 Aligned_cols=234 Identities=11% Similarity=0.042 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCCChH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYA----GVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGS----GFGPINNV 222 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~ 222 (548)
.|..+...|...|++++|+..|++.... +-.| ....+..+...+...|++++|...+..+.+. +..| ...
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~ 166 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL-SEG 166 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH-HHH
Confidence 4556666666666666666666655432 1111 2334555666666777777777777666543 1112 345
Q ss_pred hHHHHHHHHHhcCCC-----------------HHHHHHHHhcCCC-----C----ChhhhHHHHHHHHhcCCHHHHHHHH
Q 038673 223 VVGSALIDMYSKCGS-----------------IDDAYRIFVGMKQ-----R----NVFSYSSMILGFAMHGRAHAAIQLF 276 (548)
Q Consensus 223 ~~~~~li~~y~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~ 276 (548)
.++..+...|...|+ +++|.+.+++..+ . ...+|..+...|...|++++|+..|
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 677777777777787 7777777766532 1 2246777888888899999999988
Q ss_pred HHHHHcCCC-CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C---CCC----hhHH
Q 038673 277 GDMVKTETK-PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V---EPN----GGVW 347 (548)
Q Consensus 277 ~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~----~~~~ 347 (548)
++..+.... ++... ....+..+...|...|++++|.+.+++.. . ..+ ..++
T Consensus 247 ~~al~~~~~~~~~~~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 306 (411)
T 4a1s_A 247 QERLRIAREFGDRAA--------------------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSC 306 (411)
T ss_dssp HHHHHHHHHHTCHHH--------------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHH--------------------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887663100 01000 12357778888999999999999887762 1 111 4567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 348 GALLGACQIHRNPEIAQIAANHLFELEPDK------IGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 348 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
..+...+...|++++|...++++++..+.. ...+..++.+|...|++++|.+.+++..+
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777788999999999999999988854332 34788899999999999999999998765
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=2.7e-12 Score=130.98 Aligned_cols=209 Identities=11% Similarity=-0.017 Sum_probs=176.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCh-hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHH
Q 038673 166 PREAIEYFERMQYAGVETDYVTLVGVISACAQLGVI-KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRI 244 (548)
Q Consensus 166 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~ 244 (548)
+++++..+++..... +.+...+..+..++...|++ ++|.+.++.+++.... +..++..+...|.+.|++++|.+.
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE---LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566777777655432 34677788888888899999 9999999999887644 788999999999999999999999
Q ss_pred HhcCCC--CChhhhHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHH
Q 038673 245 FVGMKQ--RNVFSYSSMILGFAMH---------GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTD 313 (548)
Q Consensus 245 ~~~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~ 313 (548)
|++..+ |+...|..+...|... |++++|+..|++..+. .|+ +..
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~-----------------------~~~ 214 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVL-----------------------DGR 214 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTT-----------------------CHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCC-----------------------CHH
Confidence 988764 6667888888888888 9999999999999883 454 345
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHhCC-CCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 038673 314 HYACMVDLLGRA--------GCLEEALKMVEKMP-VEP----NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGN 380 (548)
Q Consensus 314 ~~~~li~~~~~~--------g~~~~A~~~~~~m~-~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 380 (548)
.|..+..+|... |++++|++.|++.. ..| +...|..+..++...|++++|...++++++++|+++..
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 678888888888 99999999999874 456 58889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHH
Q 038673 381 YIILSNIYASAGMWDDVSRVRRL 403 (548)
Q Consensus 381 ~~~l~~~~~~~g~~~~a~~~~~~ 403 (548)
+..+..++...|++++|.+.++.
T Consensus 295 ~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 295 QQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999876543
No 59
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.37 E-value=8e-12 Score=126.65 Aligned_cols=358 Identities=9% Similarity=0.023 Sum_probs=232.9
Q ss_pred CcchHHHhccCCC-CCcchHHHHHHHHHhCCCc---hHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC-----CcHHHH
Q 038673 2 DSFPRLVFEQVKY-KNPFLWTALIRGYILQGHL---KDSISLYCSMRREGIGPVSFTLSALFKACTEVL-----DVSLGQ 72 (548)
Q Consensus 2 ~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~-----~~~~a~ 72 (548)
+++|.+.|.+.-+ .++..+..|-..|...|++ ++|+..|++..+. +...+..+...+...+ +.++|.
T Consensus 19 ~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~ 94 (452)
T 3e4b_A 19 TVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAE 94 (452)
T ss_dssp HHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHH
Confidence 4567788866543 3556677777778888888 8999999998863 5555666666444443 778999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHH---HHHHccCCC-CCeehHHHHHHHHHhCCC----hHHHHHHHcc
Q 038673 73 QIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCS---RKVFDEMPE-RDVVSWTELIVAYANNGD----MESAGGLFNE 144 (548)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~-~~~~~~~~li~~~~~~g~----~~~A~~~f~~ 144 (548)
..++...+.| .+ ..+..|..+|...+..+.+ .+.+....+ .+...+..+...|...+. .+++..++..
T Consensus 95 ~~~~~Aa~~g--~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~ 170 (452)
T 3e4b_A 95 SLLKKAFANG--EG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKA 170 (452)
T ss_dssp HHHHHHHHTT--CS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHCC--CH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 9999999877 33 3777788888876654433 333333322 456677888888888774 4555556666
Q ss_pred CCCCChhHHHHHHHHHHHCC---ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc----CChhHHHHHHHHHHHcCCC
Q 038673 145 LPLKDKVAWTAMVTGYVQNA---KPREAIEYFERMQYAGVETDYVTLVGVISACAQL----GVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 145 m~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~ 217 (548)
....++..+..|...|...| +.++|+..|++..+.| .++...+..+...|... ++.++|...|+... .
T Consensus 171 a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~--- 245 (452)
T 3e4b_A 171 ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P--- 245 (452)
T ss_dssp HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---
T ss_pred HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---
Confidence 66777779999999999999 9999999999999887 55666556666777555 68999999999987 2
Q ss_pred CCChHhHHHHHHHH-H--hcCCCHHHHHHHHhcCCC-CChhhhHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCH
Q 038673 218 PINNVVVGSALIDM-Y--SKCGSIDDAYRIFVGMKQ-RNVFSYSSMILGFAMHG-----RAHAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 218 p~~~~~~~~~li~~-y--~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~ 288 (548)
.+...+..|..+ | ...|++++|.+.|++..+ .+...+..|...|. .| +.++|+..|++.. . +
T Consensus 246 --g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----g- 316 (452)
T 3e4b_A 246 --GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----R- 316 (452)
T ss_dssp --GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----T-
T ss_pred --CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----C-
Confidence 366778888887 4 568999999999998764 46677887877777 56 9999999998866 2 2
Q ss_pred hhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCCH
Q 038673 289 VTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGR----AGCLEEALKMVEKMPVEPNGGVWGALLGACQI----HRNP 360 (548)
Q Consensus 289 ~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~ 360 (548)
+...+..|..+|.. ..++++|...|++.-..-+......|-..|.. ..+.
T Consensus 317 ----------------------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 317 ----------------------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp ----------------------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCH
T ss_pred ----------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCH
Confidence 23345556666655 34899999999887533345555566666553 4689
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHH--HHcCCchHHHHHHHHHH
Q 038673 361 EIAQIAANHLFELEPDKIGNYIILSNIY--ASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 361 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~ 405 (548)
++|...++...+..+... ...+..+. ...++..+|.++.++-.
T Consensus 375 ~~A~~~~~~A~~~g~~~a--~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDTPEA--NDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHHHTTCCHHH--HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999988665433 23333332 22234556666655543
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=2.8e-11 Score=121.00 Aligned_cols=276 Identities=12% Similarity=0.006 Sum_probs=197.5
Q ss_pred hHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHH
Q 038673 54 TLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDL----YVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAY 129 (548)
Q Consensus 54 ~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 129 (548)
.+..+...+...|++++|...++.+++.. +.+. .++..+...|...|++++|...|++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------- 111 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH---------------- 111 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH----------------
Confidence 34455566778889999999999888875 3343 4677888888888888888888544
Q ss_pred HhCCChHHHHHHHccCCCC--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHccCC--
Q 038673 130 ANNGDMESAGGLFNELPLK--DKVAWTAMVTGYVQNAKPREAIEYFERMQYA----GVET-DYVTLVGVISACAQLGV-- 200 (548)
Q Consensus 130 ~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~-- 200 (548)
|+++....... ...+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|+
T Consensus 112 --------al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (411)
T 4a1s_A 112 --------DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL 183 (411)
T ss_dssp --------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccc
Confidence 33333333211 3456777778888888888888888776542 1111 23456677777888888
Q ss_pred ---------------hhHHHHHHHHHHHc----CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CC----
Q 038673 201 ---------------IKYANWVCEIAEGS----GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RN---- 252 (548)
Q Consensus 201 ---------------~~~a~~~~~~~~~~----~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~---- 252 (548)
+++|...+....+. +..| ....++..+...|...|++++|...|++..+ .+
T Consensus 184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (411)
T 4a1s_A 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG-AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262 (411)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH
Confidence 88888887776542 2222 3456888899999999999999999988763 12
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK-PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
..++..+...|...|++++|+..|++....... .+.. ....++..+...|...|++++|
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE--------------------VEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH--------------------HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH--------------------HHHHHHHHHHHHHHHcCCHHHH
Confidence 237888889999999999999999988763110 1100 1235678889999999999999
Q ss_pred HHHHHhCC-C---CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 332 LKMVEKMP-V---EPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 332 ~~~~~~m~-~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
.+.+++.. . .++ ..++..+...+...|++++|...+++.+++.+.
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 99998763 1 112 346777778999999999999999999987664
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=5.2e-11 Score=104.62 Aligned_cols=162 Identities=14% Similarity=0.115 Sum_probs=124.9
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
+..+|..+...|.+.|++++|.+.|++..+ .++.+|..+...|...|++++|+..+...... .|+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~---------- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTT---------- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCC----------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cch----------
Confidence 566777777777777777777777777653 35567777777788888888888888877663 333
Q ss_pred HhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038673 298 CSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
+...+..+...+...+++++|.+.+.+.. ..|+ ...+..+...+...|++++|+..++++++.+|
T Consensus 72 -------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 72 -------------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 23445666677778888888888887663 3344 66777777888899999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 376 DKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 99989999999999999999999999888654
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.35 E-value=8.3e-12 Score=124.35 Aligned_cols=265 Identities=12% Similarity=0.035 Sum_probs=207.5
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-----hhhHHHHHHHhhccCCcHHHHHHHHHHHHhC---CCC-
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPV-----SFTLSALFKACTEVLDVSLGQQIHAQTILLG---GFT- 85 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~---~~~- 85 (548)
+....+......+...|++++|+..|++..+. .|+ ..++..+...+...|+++.|...++.+++.. +..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 34556777888899999999999999999985 343 2567788888999999999999999876541 011
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHccCCC-----CC----eehHHHHHHHHHhCCC--------------------hH
Q 038673 86 SDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-----RD----VVSWTELIVAYANNGD--------------------ME 136 (548)
Q Consensus 86 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~ 136 (548)
....++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2255788899999999999999999988764 22 3478888899999999 89
Q ss_pred HHHHHHccCCC-----C----ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCC----HhhHHHHHHHHHccCChh
Q 038673 137 SAGGLFNELPL-----K----DKVAWTAMVTGYVQNAKPREAIEYFERMQYAG-VETD----YVTLVGVISACAQLGVIK 202 (548)
Q Consensus 137 ~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~~~ 202 (548)
+|.+.+.+... . ...++..+...|...|++++|+..|++..+.. -.++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 98888776431 1 24578889999999999999999999876531 0112 236778888899999999
Q ss_pred HHHHHHHHHHHcCCC---CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CC----hhhhHHHHHHHHhcCCHH
Q 038673 203 YANWVCEIAEGSGFG---PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RN----VFSYSSMILGFAMHGRAH 270 (548)
Q Consensus 203 ~a~~~~~~~~~~~~~---p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~ 270 (548)
+|...++.+.+.... +.....++..+...|.+.|++++|...|++..+ .+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999988753211 001266888999999999999999999988753 22 457888889999999999
Q ss_pred HHHHHHHHHHH
Q 038673 271 AAIQLFGDMVK 281 (548)
Q Consensus 271 ~A~~l~~~m~~ 281 (548)
+|...|++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999776
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=3.4e-12 Score=122.18 Aligned_cols=237 Identities=11% Similarity=0.036 Sum_probs=164.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHc------C
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYA-------GVETDYVTLVGVISACAQLGVIKYANWVCEIAEGS------G 215 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 215 (548)
+..+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...++.+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3557788888888888888888888887662 22333456777788888889999999888888764 3
Q ss_pred CCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-------C----ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 038673 216 FGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-------R----NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTE- 283 (548)
Q Consensus 216 ~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 283 (548)
..| ....++..+...|...|++++|...|+++.+ + ....+..+...|...|++++|++.|+++.+.-
T Consensus 106 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 106 DHP-AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TCH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCh-HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 233 4677888899999999999999998887652 1 23567888889999999999999999987630
Q ss_pred --CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC----------CCCC-hhHHH--
Q 038673 284 --TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP----------VEPN-GGVWG-- 348 (548)
Q Consensus 284 --~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~-~~~~~-- 348 (548)
..++.. .....+..+...|.+.|++++|.+.++++. ..|. ...|.
T Consensus 185 ~~~~~~~~--------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 244 (311)
T 3nf1_A 185 TKLGPDDP--------------------NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA 244 (311)
T ss_dssp HTSCTTCH--------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH
T ss_pred HHhCCCCH--------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Confidence 011110 123467888999999999999999998762 1122 12222
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 349 ----ALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 349 ----~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.+...+...+.+..+...++......|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2223344555666677778888778888888999999999999999999999998764
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=5.1e-12 Score=122.02 Aligned_cols=261 Identities=12% Similarity=0.072 Sum_probs=176.9
Q ss_pred HHHHhCCChHHHHHHHccCC---CCC----hhHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHhhHHHHHHH
Q 038673 127 VAYANNGDMESAGGLFNELP---LKD----KVAWTAMVTGYVQNAKPREAIEYFERMQYA----GVET-DYVTLVGVISA 194 (548)
Q Consensus 127 ~~~~~~g~~~~A~~~f~~m~---~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~ 194 (548)
..+...|++++|...|++.. +.+ ...|..+...|...|++++|+..+++.... +-.| ...++..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 34444455555555544432 112 345667777777777777777777765432 1112 23456666777
Q ss_pred HHccCChhHHHHHHHHHHHcCCC---CCChHhHHHHHHHHHhcCCC--------------------HHHHHHHHhcCCC-
Q 038673 195 CAQLGVIKYANWVCEIAEGSGFG---PINNVVVGSALIDMYSKCGS--------------------IDDAYRIFVGMKQ- 250 (548)
Q Consensus 195 ~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~~~li~~y~~~g~--------------------~~~A~~~~~~~~~- 250 (548)
+...|++++|...+..+.+.... +.....++..+...|...|+ +++|.+.+++..+
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 77788888888877776543211 00124477778888888888 8888887776542
Q ss_pred ----C----ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHH
Q 038673 251 ----R----NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK-PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDL 321 (548)
Q Consensus 251 ----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~ 321 (548)
+ ....+..+...|...|++++|+..+++..+.... ++.. .....+..+...
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~l~~~ 232 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA--------------------AERRAYSNLGNA 232 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH--------------------HHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH--------------------HHHHHHHHHHHH
Confidence 1 1346777888899999999999999988753100 1110 012357788889
Q ss_pred HHHcCCHHHHHHHHHhCC----CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------chhHHHHHHH
Q 038673 322 LGRAGCLEEALKMVEKMP----VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDK------IGNYIILSNI 387 (548)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~ 387 (548)
+...|++++|...+++.. ..++ ..++..+...+...|+++.|...++++++..|.. ..++..++.+
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 312 (338)
T 3ro2_A 233 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 312 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999999999988762 1122 4566777788999999999999999998854432 3478889999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 038673 388 YASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 388 ~~~~g~~~~a~~~~~~m~~~ 407 (548)
|...|++++|.+.+++..+.
T Consensus 313 ~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 313 YTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHC
T ss_pred HHHcCChHHHHHHHHHHHHH
Confidence 99999999999999988753
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=1.3e-11 Score=119.07 Aligned_cols=262 Identities=13% Similarity=0.054 Sum_probs=204.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-----hhhHHHHHHHhhccCCcHHHHHHHHHHHHh----CCCCCChh
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRREGIGPV-----SFTLSALFKACTEVLDVSLGQQIHAQTILL----GGFTSDLY 89 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 89 (548)
.+......+...|++++|+..|+++.+. .|+ ...+..+...+...|+++.|...++..++. +..+....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 4556677789999999999999999985 343 356778888899999999999999987654 20122356
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCC-----CC----eehHHHHHHHHHhCCC--------------------hHHHHH
Q 038673 90 VGNTMIGMYVKCGFLGCSRKVFDEMPE-----RD----VVSWTELIVAYANNGD--------------------MESAGG 140 (548)
Q Consensus 90 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 140 (548)
++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788899999999999999999988653 22 3378888899999999 999988
Q ss_pred HHccCCC-----C----ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHccCChhHHHH
Q 038673 141 LFNELPL-----K----DKVAWTAMVTGYVQNAKPREAIEYFERMQYA----GVET-DYVTLVGVISACAQLGVIKYANW 206 (548)
Q Consensus 141 ~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~ 206 (548)
.+++... . ...++..+...|...|++++|...+++..+. +..+ ...++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8876531 1 2447888899999999999999999987643 1111 12367788888999999999999
Q ss_pred HHHHHHHcCCC---CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CC----hhhhHHHHHHHHhcCCHHHHHH
Q 038673 207 VCEIAEGSGFG---PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RN----VFSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 207 ~~~~~~~~~~~---p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~ 274 (548)
.++...+.... +.....++..+...|...|++++|...+++..+ .+ ..++..+...|...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99988653211 102366788899999999999999999988753 22 3467788899999999999999
Q ss_pred HHHHHHHc
Q 038673 275 LFGDMVKT 282 (548)
Q Consensus 275 l~~~m~~~ 282 (548)
.+++..+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998873
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=3.1e-11 Score=128.29 Aligned_cols=162 Identities=17% Similarity=0.221 Sum_probs=136.6
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLT 296 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 296 (548)
.+..+++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++.++ +.|+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~--------- 75 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT--------- 75 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT---------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC---------
Confidence 5678888888888888888888888887763 3567788888888889999999999988887 4555
Q ss_pred HHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038673 297 ACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELE 374 (548)
Q Consensus 297 a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 374 (548)
+...|..+..+|.+.|++++|++.|++.- +.|+ ...|..+..++...|++++|+..++++++++
T Consensus 76 --------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 76 --------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34568888888999999999999888763 5565 7788888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 375 PDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 375 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
|+++..+..|+.+|...|+|++|.+.+++..+
T Consensus 142 P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999999988887653
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=2.8e-10 Score=109.15 Aligned_cols=214 Identities=10% Similarity=0.058 Sum_probs=124.1
Q ss_pred HHHHHHHccCC---CCChhHHHHHHHHHH-------HCCCh-------hHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHc
Q 038673 136 ESAGGLFNELP---LKDKVAWTAMVTGYV-------QNAKP-------REAIEYFERMQYAGVET-DYVTLVGVISACAQ 197 (548)
Q Consensus 136 ~~A~~~f~~m~---~~~~~~~~~li~~~~-------~~g~~-------~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~ 197 (548)
++|..+|++.. ..++..|..++..+. +.|++ ++|..+|++.... +.| +...+..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 34444454443 235556666665554 34664 6677777666652 133 33456666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChHh-HHHHHHHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHHH-HhcCCHHHH
Q 038673 198 LGVIKYANWVCEIAEGSGFGPINNVV-VGSALIDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILGF-AMHGRAHAA 272 (548)
Q Consensus 198 ~g~~~~a~~~~~~~~~~~~~p~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~-~~~g~~~~A 272 (548)
.|++++|..+|+.+++..+. +.. +|..++..+.+.|++++|.++|++..+. +...|....... ...|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS---CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc---CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 67777777777776664322 333 6666677777777777777777666542 222232222221 125777777
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCC--ChhH
Q 038673 273 IQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP----VEP--NGGV 346 (548)
Q Consensus 273 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p--~~~~ 346 (548)
..+|++..+. .|+ +...|..++..+.+.|++++|..+|++.. +.| ....
T Consensus 189 ~~~~~~al~~--~p~-----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 189 FKIFELGLKK--YGD-----------------------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp HHHHHHHHHH--HTT-----------------------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred HHHHHHHHHh--CCC-----------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 7777776652 233 23446666666667777777777776652 133 2446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 347 WGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 347 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
|..++......|+.+.|..+++++.+..|++.
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 66666666677777777777777777777644
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=2.4e-11 Score=116.20 Aligned_cols=247 Identities=10% Similarity=0.022 Sum_probs=156.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCC----CCChhHHHHHHHHHHHC
Q 038673 88 LYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELP----LKDKVAWTAMVTGYVQN 163 (548)
Q Consensus 88 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~ 163 (548)
..++..+...|...|++++|..+|+++. +++.... .....++..+...|...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~ 82 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQAL------------------------EDLEKTSGHDHPDVATMLNILALVYRDQ 82 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHHHCSSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHHHHHcCCCCHHHHHHHHHHHHHHHHC
Confidence 4456666666666666666666644332 2222111 11345677788888888
Q ss_pred CChhHHHHHHHHHHHC------CCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHc------CCCCCChHhHHHHHHH
Q 038673 164 AKPREAIEYFERMQYA------GVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGS------GFGPINNVVVGSALID 230 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~~~li~ 230 (548)
|++++|+..|++.... +-.| ...++..+...+...|++++|...++.+.+. +..| ....++..+..
T Consensus 83 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~ 161 (311)
T 3nf1_A 83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP-DVAKQLNNLAL 161 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHH
Confidence 8888888888877653 2122 3456777888888889999999988888764 3233 46677888999
Q ss_pred HHhcCCCHHHHHHHHhcCCCC-----------ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHhhHH
Q 038673 231 MYSKCGSIDDAYRIFVGMKQR-----------NVFSYSSMILGFAMHGRAHAAIQLFGDMVKT-------ETKPNGVTFI 292 (548)
Q Consensus 231 ~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~ 292 (548)
.|...|++++|...|+++.+. ...++..+...|...|++++|+..|+++.+. ...|......
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 999999999999888876531 2346788888999999999999999998763 1222222111
Q ss_pred HHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038673 293 GVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHL 370 (548)
Q Consensus 293 ~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 370 (548)
. ....+..+...+...+.+.+|...++... ..|+ ..+|..+..++...|++++|...++++
T Consensus 242 ~-----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 242 M-----------------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp H-----------------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred H-----------------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1 11223334444555666666666666664 2333 567788889999999999999999999
Q ss_pred hhcCCC
Q 038673 371 FELEPD 376 (548)
Q Consensus 371 ~~~~p~ 376 (548)
+++.|.
T Consensus 305 l~l~~~ 310 (311)
T 3nf1_A 305 MRSRKQ 310 (311)
T ss_dssp HHHHC-
T ss_pred HHHhhc
Confidence 887664
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.29 E-value=9.3e-11 Score=102.97 Aligned_cols=167 Identities=16% Similarity=0.042 Sum_probs=112.6
Q ss_pred CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHH
Q 038673 184 DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMI 260 (548)
Q Consensus 184 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 260 (548)
+...|..+...+...|++++|.+.|+++++..+. +..++..+...|.+.|++++|...+..... .+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 3445566666666666666666666666665533 666666677777777777777666665542 3445566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-
Q 038673 261 LGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP- 339 (548)
Q Consensus 261 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 339 (548)
..+...++++.|...+.+.... .|+ +...+..+...|.+.|++++|++.|++..
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~-----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTV-----------------------YADAYYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--Ccc-----------------------chHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 6677777777777777776652 333 33456667777777788888887777663
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 340 VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 340 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
..|+ ..+|..+..++...|++++|...++++++++|+++
T Consensus 136 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 136 IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 3444 66777777888888888888888888888888654
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=8.8e-10 Score=105.61 Aligned_cols=215 Identities=9% Similarity=-0.073 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhh-------ccCCc-------HHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 038673 34 KDSISLYCSMRREGIGPVSFTLSALFKACT-------EVLDV-------SLGQQIHAQTILLGGFTSDLYVGNTMIGMYV 99 (548)
Q Consensus 34 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 99 (548)
++|+.+|++..... +-+...|..+...+. ..|++ ++|..+++..++.- .+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 45666666666531 224445555555543 23554 56666666666621 1334556666666666
Q ss_pred HcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChh-HHHHHHHHHHHCCChhHHHHHHHHHHH
Q 038673 100 KCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKV-AWTAMVTGYVQNAKPREAIEYFERMQY 178 (548)
Q Consensus 100 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~ 178 (548)
+.|++++|..+|++..+ ....+.. .|..++..+.+.|++++|..+|++..+
T Consensus 111 ~~~~~~~A~~~~~~al~----------------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA----------------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HTTCHHHHHHHHHHHHT----------------------------SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHh----------------------------ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 66666666666554322 1112333 788888888888888888888888876
Q ss_pred CCCCCCHhhHHHHHHHH-HccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC------
Q 038673 179 AGVETDYVTLVGVISAC-AQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR------ 251 (548)
Q Consensus 179 ~g~~p~~~t~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------ 251 (548)
.. +++...|....... ...|+.++|..+|+.+++..+. +...+..++..+.+.|++++|..+|++....
T Consensus 163 ~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 163 DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp ST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred cC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 53 23333343332222 2368999999999998887543 7888999999999999999999999887641
Q ss_pred -ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 252 -NVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 252 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
....|..++..+...|+.+.|..+++++.+.
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3457888898889999999999999999873
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=3.1e-10 Score=112.40 Aligned_cols=201 Identities=8% Similarity=-0.087 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHC--CC---CC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCC
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYA--GV---ET-DYVTLVGVISACAQLGVIKYANWVCEIAEGS----GFGPI 219 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~---~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~ 219 (548)
..+|..+...|...|++++|+..+++..+. .. .| ...++..+...+...|++++|...+..+.+. +..+
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~- 221 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ- 221 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH-
Confidence 356777788888888888888888776542 11 11 1345677778888888888888888877653 2111
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CC----hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHh
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RN----VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK-PNGV 289 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~ 289 (548)
....++..+...|...|++++|.+.|++..+ .+ ..++..+...|...|++++|...+++..+.... ++..
T Consensus 222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 301 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI 301 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 2345788889999999999999888887654 22 346778888899999999999999887763110 0111
Q ss_pred hHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 038673 290 TFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGC---LEEALKMVEKMPVEPN-GGVWGALLGACQIHRNPEIAQI 365 (548)
Q Consensus 290 t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 365 (548)
....+..+...|...|+ +++|+.++++....|+ ...+..+...+...|+++.|..
T Consensus 302 ---------------------~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 302 ---------------------YLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASA 360 (383)
T ss_dssp ---------------------HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 11224556677777777 7778888877753333 2344445556666666666666
Q ss_pred HHHHHhh
Q 038673 366 AANHLFE 372 (548)
Q Consensus 366 ~~~~~~~ 372 (548)
.+++..+
T Consensus 361 ~~~~al~ 367 (383)
T 3ulq_A 361 YFLKVEQ 367 (383)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666555
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=8.8e-11 Score=119.75 Aligned_cols=213 Identities=12% Similarity=-0.029 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCc-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHc
Q 038673 34 KDSISLYCSMRREGIGPVSFTLSALFKACTEVLDV-SLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFD 112 (548)
Q Consensus 34 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 112 (548)
++++..++..... .+.+...+..+..++...|++ ++|...++.+++.. +.+..++..+..+|.+.|++++|...|+
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444445444332 122455556666666666666 66666666666654 4455666666666666666666666655
Q ss_pred cCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHC---------CChhHHHHHHHHHHHCCCCC
Q 038673 113 EMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQN---------AKPREAIEYFERMQYAGVET 183 (548)
Q Consensus 113 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p 183 (548)
+..+. .|+...|..+...|... |++++|+..|++..+.. +-
T Consensus 162 ~al~~-----------------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~ 211 (474)
T 4abn_A 162 GALTH-----------------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VL 211 (474)
T ss_dssp HHHTT-----------------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHhh-----------------------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CC
Confidence 54320 23344555555555555 66666666666665542 22
Q ss_pred CHhhHHHHHHHHHcc--------CChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CC
Q 038673 184 DYVTLVGVISACAQL--------GVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RN 252 (548)
Q Consensus 184 ~~~t~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~ 252 (548)
+...+..+..++... |++++|...++.+.+.......+..++..+...|.+.|++++|.+.|++..+ .+
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 445555566666555 6666666666666665440001566666666666667777777666666542 33
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDM 279 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m 279 (548)
...|..+...+...|++++|++.+.++
T Consensus 292 ~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 292 PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445666666666667777766655544
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=6.9e-10 Score=96.87 Aligned_cols=162 Identities=12% Similarity=-0.009 Sum_probs=140.4
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
....+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+. .|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~---------- 74 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APD---------- 74 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC----------
Confidence 456778888999999999999999999875 35677888999999999999999999999874 333
Q ss_pred HhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038673 298 CSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-V-EPNGGVWGALLGACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
+...+..+...+...|++++|.+.++++. . ..+...|..+...+...|+++.|...++++.+..|
T Consensus 75 -------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 75 -------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp -------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 34567788889999999999999998874 2 34577888888999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 376 DKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.++..+..++.+|...|++++|.+.+++..+.
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999988754
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=7.1e-09 Score=108.94 Aligned_cols=366 Identities=10% Similarity=0.042 Sum_probs=201.9
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC---cHHHHHHHHHHHHhCCCCCChhHH
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD---VSLGQQIHAQTILLGGFTSDLYVG 91 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~ 91 (548)
.|...|..++..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ ++.+..+|+..+.....+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 36677888888888888888888888888874 34455566666666666677 888888888887753113777777
Q ss_pred HHHHHHHHHcCCh--------HHHHHHHccCC------CC-CeehHHHHHHHHH---------hCCChHHHHHHHccCCC
Q 038673 92 NTMIGMYVKCGFL--------GCSRKVFDEMP------ER-DVVSWTELIVAYA---------NNGDMESAGGLFNELPL 147 (548)
Q Consensus 92 ~~li~~~~~~g~~--------~~A~~~~~~m~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~f~~m~~ 147 (548)
...+....+.++. +..+++|+... ++ +...|...+.-.. ..++++.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7777766555543 23345665422 22 2345666655432 23345666677666542
Q ss_pred -C--Ch-hHHH---HHHHHH----------HHCCChhHHHHHHHH-----------------------------------
Q 038673 148 -K--DK-VAWT---AMVTGY----------VQNAKPREAIEYFER----------------------------------- 175 (548)
Q Consensus 148 -~--~~-~~~~---~li~~~----------~~~g~~~~A~~l~~~----------------------------------- 175 (548)
| +. .+|. .....+ -....++.|...+.+
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 1 11 1221 111110 000111222223322
Q ss_pred --------------------------------HHHCCCCCCHhhHHHHHHHHHccCChhHHH-HHHHHHHHcCCCCCChH
Q 038673 176 --------------------------------MQYAGVETDYVTLVGVISACAQLGVIKYAN-WVCEIAEGSGFGPINNV 222 (548)
Q Consensus 176 --------------------------------m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~p~~~~ 222 (548)
.... .+-+...|.....-+...|+.+.|. ++++......+ .+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P---~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP---NSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT---TCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC---CCH
Confidence 2211 0111222222222233344555553 55555554332 244
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCCC-------------CC------------hhhhHHHHHHHHhcCCHHHHHHHHH
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQ-------------RN------------VFSYSSMILGFAMHGRAHAAIQLFG 277 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~l~~ 277 (548)
..+..++....+.|+++.|.++|+++.. |+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555555555555555555432 11 1234455554455555555555555
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHc-CCHHHHHHHHHhCC--CCCChhHHHHHHHHH
Q 038673 278 DMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRA-GCLEEALKMVEKMP--VEPNGGVWGALLGAC 354 (548)
Q Consensus 278 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~ 354 (548)
+..+.- | .+....|...+.+..+. ++.+.|..+|+..- ..-+...|...+...
T Consensus 459 ~A~~~~--~----------------------~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 459 KCRRLK--K----------------------LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHTG--G----------------------GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhc--C----------------------CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 555420 0 01123343333333344 34788888887663 223466677777777
Q ss_pred HhcCCHHHHHHHHHHHhhcCCC---CchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 355 QIHRNPEIAQIAANHLFELEPD---KIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
...|+.+.|..+|++++...|+ ....|...+..-.+.|..+.+.++.+++.+.-.
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7788888999999988887663 445777777777888888888888888876543
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=2.4e-08 Score=98.28 Aligned_cols=274 Identities=12% Similarity=-0.028 Sum_probs=181.5
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh----hHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCCh----hHHH
Q 038673 21 TALIRGYILQGHLKDSISLYCSMRREGIGPVSF----TLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDL----YVGN 92 (548)
Q Consensus 21 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 92 (548)
......+...|++++|...+++........+.. ++..+...+...|+++.|...++..++...-..+. .+++
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455677899999999999987753111222 35555666778899999998888877642111222 2355
Q ss_pred HHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCC----ChhHHHHHHHHHHHCCChhH
Q 038673 93 TMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLK----DKVAWTAMVTGYVQNAKPRE 168 (548)
Q Consensus 93 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~ 168 (548)
.+...+...|++++|...++ ++.++......+ ....+..+...+...|++++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQE------------------------KAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH------------------------HHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 66677777888888877743 333344433322 23456677888899999999
Q ss_pred HHHHHHHHHHCCCC--C--CHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHH----HHHHHHhcCCCHHH
Q 038673 169 AIEYFERMQYAGVE--T--DYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGS----ALIDMYSKCGSIDD 240 (548)
Q Consensus 169 A~~l~~~m~~~g~~--p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~----~li~~y~~~g~~~~ 240 (548)
|...+++.....-. + ...++..+...+...|++++|...++........+........ ..+..+...|++++
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 99999887653211 1 2345667778888999999999999988764222101111111 34455889999999
Q ss_pred HHHHHhcCCCCCh-------hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCH-
Q 038673 241 AYRIFVGMKQRNV-------FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPST- 312 (548)
Q Consensus 241 A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~- 312 (548)
|...+++...++. ..+..+...+...|++++|...+++.....-.. +..++.
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--------------------~~~~~~~ 293 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--------------------RLMSDLN 293 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------TCHHHHH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--------------------cchhhHH
Confidence 9999998875322 245677788999999999999999886531100 111111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
..+..+..++...|+.++|...+++.
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 24566677888889999998888765
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.16 E-value=5.9e-09 Score=94.86 Aligned_cols=207 Identities=12% Similarity=0.028 Sum_probs=154.9
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 148 KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
.|+..|......+...|++++|+..|++..+..-+++...+..+..++...|++++|...++.+.+..+. +..++..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHHHHH
Confidence 3567888888899999999999999999887653367777777888899999999999999999887654 8889999
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCC--C-Ch-------hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQ--R-NV-------FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~--~-~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
+...|.+.|++++|...|++..+ | +. ..|..+...+...|++++|++.|++..+ +.|+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~-------- 151 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKW-------- 151 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHH--------
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcc--------
Confidence 99999999999999999988763 3 33 4577777888999999999999999887 455410
Q ss_pred HhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038673 298 CSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
+...|..+...|...|+. +++++. ...+...+.... ....+.+++|...+++++++.|
T Consensus 152 -------------~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 152 -------------KTDALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp -------------HHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred -------------cHHHHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence 123466666666655543 222221 122344444433 3345668999999999999999
Q ss_pred CCchhHHHHHHH
Q 038673 376 DKIGNYIILSNI 387 (548)
Q Consensus 376 ~~~~~~~~l~~~ 387 (548)
+++.+...+..+
T Consensus 212 ~~~~~~~~l~~i 223 (228)
T 4i17_A 212 NRTEIKQMQDQV 223 (228)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 998776666554
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.15 E-value=6.1e-09 Score=103.03 Aligned_cols=234 Identities=9% Similarity=-0.076 Sum_probs=167.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCC-CCC----hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCC-----ChhHHH
Q 038673 23 LIRGYILQGHLKDSISLYCSMRREGI-GPV----SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTS-----DLYVGN 92 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 92 (548)
....+...|++++|+..|++....-. .|| ..++..+...+...|+++.|...+...++...-.+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556778999999999988876310 122 34677777888888888888888888776521111 134666
Q ss_pred HHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCC--ChhHHHHHHHHHHHCCChhHHH
Q 038673 93 TMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLK--DKVAWTAMVTGYVQNAKPREAI 170 (548)
Q Consensus 93 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~ 170 (548)
.+...|...|++++|...|+ +|++++.....+ ...+++.+...|...|++++|+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQ------------------------KAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHH------------------------HHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 77777777777777777743 334444433222 1347888889999999999999
Q ss_pred HHHHHHHHC----CC-CCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCC---CCCChHhHHHHHHHHHhcCCC---HH
Q 038673 171 EYFERMQYA----GV-ETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGF---GPINNVVVGSALIDMYSKCGS---ID 239 (548)
Q Consensus 171 ~l~~~m~~~----g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~y~~~g~---~~ 239 (548)
..|++..+. +. +....++..+...+...|++++|...++...+... .| .....+..+...|...|+ ++
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 323 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV-IYLSEFEFLKSLYLSGPDEEAIQ 323 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHTSSCCHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhCCCcHHHHH
Confidence 999887662 33 33455678888889999999999999988765421 11 234446778999999999 89
Q ss_pred HHHHHHhcCCCC--ChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 240 DAYRIFVGMKQR--NVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 240 ~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
+|..++++.... ....+..+...|...|++++|...|++..+
T Consensus 324 ~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 324 GFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999988542 234677888899999999999999998876
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=4.1e-09 Score=91.85 Aligned_cols=157 Identities=15% Similarity=0.045 Sum_probs=112.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 038673 122 WTELIVAYANNGDMESAGGLFNELPL---KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQL 198 (548)
Q Consensus 122 ~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 198 (548)
|..+...+...|++++|...|+++.. .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 33344445555555555555555442 245667777777888888888888888776653 34566677777778888
Q ss_pred CChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHH
Q 038673 199 GVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 199 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 275 (548)
|++++|.+.++.+.+.... +..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|...
T Consensus 90 ~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPI---NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcH---hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888776543 677788888888888888888888877653 3556788888888888888888888
Q ss_pred HHHHHHc
Q 038673 276 FGDMVKT 282 (548)
Q Consensus 276 ~~~m~~~ 282 (548)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8887763
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=9.3e-09 Score=101.52 Aligned_cols=223 Identities=9% Similarity=-0.001 Sum_probs=149.8
Q ss_pred HHhCCChHHHHHHHccCCC-----C----ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC----C-CCC-CHhhHHHHHH
Q 038673 129 YANNGDMESAGGLFNELPL-----K----DKVAWTAMVTGYVQNAKPREAIEYFERMQYA----G-VET-DYVTLVGVIS 193 (548)
Q Consensus 129 ~~~~g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~p-~~~t~~~ll~ 193 (548)
+...|++++|...|++... + ...++..+...|...|++++|+..+++.... + ..+ ...++..+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3445555555555544321 1 2456778888888899999988888876542 1 111 2346677888
Q ss_pred HHHccCChhHHHHHHHHHHHc----CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CC---hhhhHHHHH
Q 038673 194 ACAQLGVIKYANWVCEIAEGS----GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RN---VFSYSSMIL 261 (548)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~---~~~~~~li~ 261 (548)
.+...|++++|...+..+.+. +..+ ....++..+...|...|++++|...|++..+ .+ ..++..+..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDR-FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 888999999999988887653 2221 2356788899999999999999999987764 22 456777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCC---HHHHHHHHHhC
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGC---LEEALKMVEKM 338 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m 338 (548)
.|...|++++|...+++..+.....+... ....+..+...+...|+ +++|+..+++.
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~ 329 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKF--------------------YKELFLFLQAVYKETVDERKIHDLLSYFEKK 329 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSC--------------------HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHH--------------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC
Confidence 99999999999999999887432211111 12235556666777777 88888888876
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038673 339 PVEPN-GGVWGALLGACQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 339 ~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 372 (548)
...|+ ...+..+...+...|+++.|...++++.+
T Consensus 330 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 330 NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 53333 23444455666777777777777666654
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.12 E-value=1.5e-08 Score=99.62 Aligned_cols=235 Identities=14% Similarity=0.057 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCCH----hhHHHHHHHHHccCChhHHHHHHHHHHHc----CCC--CCC
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETDY----VTLVGVISACAQLGVIKYANWVCEIAEGS----GFG--PIN 220 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--p~~ 220 (548)
+++.+...+...|++++|...+++.....- .++. .++..+...+...|++++|...++...+. +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~-~ 133 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP-M 133 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST-H
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc-H
Confidence 456666777888888888888887654210 1121 23455667778889999998888877653 221 2 3
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--C------ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-hH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--R------NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGV-TF 291 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 291 (548)
...++..+...|...|++++|...+++..+ + ...+|..+...+...|++++|...+++.....-.++.. .+
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 213 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 213 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhH
Confidence 456677788889999999999998887542 1 12457778888999999999999999987642222211 10
Q ss_pred HHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-----hhHHHHHHHHHHhcCCHHHHHH
Q 038673 292 IGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-----GGVWGALLGACQIHRNPEIAQI 365 (548)
Q Consensus 292 ~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~~~~~~a~~ 365 (548)
.. ......+..+...|++++|...+++.. ..|. ...+..+...+...|++++|..
T Consensus 214 ~~-------------------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 274 (373)
T 1hz4_A 214 IS-------------------NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEI 274 (373)
T ss_dssp HH-------------------HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HH-------------------HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 00 011134455778999999999999885 2222 2245566688899999999999
Q ss_pred HHHHHhhcCCC-----C-chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 366 AANHLFELEPD-----K-IGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 366 ~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.++.+.+..+. . ...+..++.+|...|+.++|...+++..+
T Consensus 275 ~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 275 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99998874322 1 23677889999999999999999988764
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=1.1e-09 Score=102.74 Aligned_cols=201 Identities=11% Similarity=0.038 Sum_probs=130.0
Q ss_pred HhhHHHHHHHHHccCChhHHHHHHHHHHHc------CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-------C
Q 038673 185 YVTLVGVISACAQLGVIKYANWVCEIAEGS------GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-------R 251 (548)
Q Consensus 185 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~ 251 (548)
..++..+...+...|++++|...+..+.+. +..| ....++..+...|...|++++|...|++..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP-AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 445566666667777777777777766544 2222 4566777777788888888888777776542 1
Q ss_pred ----ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHH
Q 038673 252 ----NVFSYSSMILGFAMHGRAHAAIQLFGDMVKT---ETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGR 324 (548)
Q Consensus 252 ----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~ 324 (548)
...+|..+...|...|++++|+..|++..+. ...|+.. ....++..+...|.+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------------------~~~~~~~~la~~~~~ 181 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP--------------------NVAKTKNNLASCYLK 181 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH--------------------HHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH--------------------HHHHHHHHHHHHHHH
Confidence 2356777888888889999999988888763 0111111 123568888999999
Q ss_pred cCCHHHHHHHHHhCC----------CCCC-hhHHHHHHHHHHhcCC------HHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 325 AGCLEEALKMVEKMP----------VEPN-GGVWGALLGACQIHRN------PEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 325 ~g~~~~A~~~~~~m~----------~~p~-~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
.|++++|.+.+++.. ..|. ...|..+.......+. +..+...++......|....++..++.+
T Consensus 182 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 261 (283)
T 3edt_B 182 QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGAL 261 (283)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999998762 2333 3334433333333332 3333333333333445566789999999
Q ss_pred HHHcCCchHHHHHHHHHHh
Q 038673 388 YASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 388 ~~~~g~~~~a~~~~~~m~~ 406 (548)
|...|++++|.+++++..+
T Consensus 262 ~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 262 YRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.05 E-value=2.8e-09 Score=113.29 Aligned_cols=161 Identities=13% Similarity=0.034 Sum_probs=123.7
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
+..+|+.|...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|.+.|+++++.... +..++..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---FADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 45678888888888888888888888877652 234667778888888888888888888888877644 77888888
Q ss_pred HHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCcc
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKC 305 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 305 (548)
..+|.+.|++++|.+.|++..+ .+...|+.+...|...|++++|++.|++.++ +.|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~------------------ 143 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPD------------------ 143 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSC------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC------------------
Confidence 8888888888888888887653 4567788888888888888888888888877 4555
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 306 YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
+...|..+..+|...|++++|.+.+++.
T Consensus 144 -----~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 144 -----FPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp -----CHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred -----ChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 3355777788888888888877776654
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.04 E-value=4e-08 Score=96.96 Aligned_cols=232 Identities=12% Similarity=-0.006 Sum_probs=166.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCC-CCC----hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCC-----ChhHHHH
Q 038673 24 IRGYILQGHLKDSISLYCSMRREGI-GPV----SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTS-----DLYVGNT 93 (548)
Q Consensus 24 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 93 (548)
...+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+...++...-.+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445678888888888888775311 122 34567777778888888888888887776420111 1345667
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCC--ChhHHHHHHHHHHHCCChhHHHH
Q 038673 94 MIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLK--DKVAWTAMVTGYVQNAKPREAIE 171 (548)
Q Consensus 94 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~ 171 (548)
+..+|...|++++|.+.|+ +|++++.....+ ...+++.+...|...|++++|+.
T Consensus 188 lg~~y~~~~~~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLE------------------------AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777778777777743 334444443322 23578888899999999999999
Q ss_pred HHHHHHH-----CCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC---CCChHhHHHHHHHHHhcCCC---HHH
Q 038673 172 YFERMQY-----AGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFG---PINNVVVGSALIDMYSKCGS---IDD 240 (548)
Q Consensus 172 l~~~m~~-----~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~~~li~~y~~~g~---~~~ 240 (548)
.|++... .. +....++..+...+.+.|++++|...++...+.... | .....+..+...|...|+ +++
T Consensus 244 ~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 244 HFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK-FYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS-CHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9988876 32 233567788888999999999999999998875321 2 345667888888889998 889
Q ss_pred HHHHHhcCCCC--ChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 241 AYRIFVGMKQR--NVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 241 A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
|...+++.... ....+..+...|...|++++|...|++..+
T Consensus 322 al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 322 LLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999886532 224566788899999999999999998865
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.02 E-value=5.5e-09 Score=95.06 Aligned_cols=198 Identities=11% Similarity=-0.070 Sum_probs=127.4
Q ss_pred CCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHH
Q 038673 183 TDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSM 259 (548)
Q Consensus 183 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 259 (548)
.|...+......+...|++++|...++.+++....+ +...+..+...|.+.|++++|.+.|++..+ .+...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ--DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 345667777777788888888888888888776532 555666678888888888888888877653 244567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 260 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
...|...|++++|+..|++..+. .|+...+ ...-...|..+...+...|++++|.+.|++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~----------------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATI----------------EKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHH----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHH----------------HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 77888888888888888887762 3331110 00001446666677777788888887777664
Q ss_pred -CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 340 -VEPN---GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 340 -~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
..|+ ...|..+..++. ..+...++++..+.+.++..|..+. ....|.+++|...+++..+.
T Consensus 145 ~~~p~~~~~~~~~~l~~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 145 DVTSKKWKTDALYSLGVLFY-----NNGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp TSSCHHHHHHHHHHHHHHHH-----HHHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcccHHHHHHHHHHHH-----HHHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 4554 334444444443 3445556666666665544444332 33445679999999888653
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=1.3e-08 Score=95.41 Aligned_cols=229 Identities=10% Similarity=-0.032 Sum_probs=148.0
Q ss_pred HhCCCchHHHHHHHHHHHC-------CCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHh------CCCCCChhHHHHH
Q 038673 28 ILQGHLKDSISLYCSMRRE-------GIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILL------GGFTSDLYVGNTM 94 (548)
Q Consensus 28 ~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l 94 (548)
...|++++|+..|++..+. ..+....++..+...+...|++++|...++.+++. +..+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567788888777776652 11124556788888888999999999999888775 2112345678888
Q ss_pred HHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCC----CChhHHHHHHHHHHHCCChhHHH
Q 038673 95 IGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPL----KDKVAWTAMVTGYVQNAKPREAI 170 (548)
Q Consensus 95 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~ 170 (548)
...|...|++++|...|++. .+++.+... ....+|..+...|...|++++|+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRA------------------------LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------------------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH------------------------HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888886443 333322211 13456777888888888888888
Q ss_pred HHHHHHHHC------CCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHc-------CCCCCChHhHHHHHHHHHhcC-
Q 038673 171 EYFERMQYA------GVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGS-------GFGPINNVVVGSALIDMYSKC- 235 (548)
Q Consensus 171 ~l~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~~~~~li~~y~~~- 235 (548)
..|++..+. +-.| ...++..+...+...|++++|...++.+.+. ...| .....+..+...+...
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 226 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG-DNKPIWMHAEEREESKD 226 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCS-SCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHhcCC
Confidence 888877653 1122 3456777888888888888888888887753 1122 2344444444444432
Q ss_pred -----CCHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 236 -----GSIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 236 -----g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
..+..+...+...... ...++..+...|...|++++|..+|++..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 227 KRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345555555555533 235688888999999999999999998775
No 86
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.00 E-value=3.1e-07 Score=96.54 Aligned_cols=360 Identities=9% Similarity=-0.033 Sum_probs=224.8
Q ss_pred CchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC---hHHHH
Q 038673 32 HLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGF---LGCSR 108 (548)
Q Consensus 32 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~ 108 (548)
...+.+..|++.+... +-|..+|..++..+...+.++.+..+++.++.. +|.....|...+..-.+.|. ++.+.
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 3555666667666653 348889999999999999999999999999998 68889999999999999999 99999
Q ss_pred HHHccCCC-----CCeehHHHHHHHHHhCCCh--------HHHHHHHccC-------CCCChhHHHHHHHHHH-------
Q 038673 109 KVFDEMPE-----RDVVSWTELIVAYANNGDM--------ESAGGLFNEL-------PLKDKVAWTAMVTGYV------- 161 (548)
Q Consensus 109 ~~~~~m~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~f~~m-------~~~~~~~~~~li~~~~------- 161 (548)
.+|++... |++..|..-+.-..+.++. +...++|+.. ...+...|...+....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99998764 6777888777655554443 2334566642 2224567888776543
Q ss_pred --HCCChhHHHHHHHHHHHCCCCCCHhhH---HHHHHHHHc----------cCChhHH----------------------
Q 038673 162 --QNAKPREAIEYFERMQYAGVETDYVTL---VGVISACAQ----------LGVIKYA---------------------- 204 (548)
Q Consensus 162 --~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~~~~~----------~g~~~~a---------------------- 204 (548)
.+++.+.+..+|++........-..+| ..+...... ...++.|
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 234567788888887742111111122 111111000 0011111
Q ss_pred ---------------------------------------------HHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHH
Q 038673 205 ---------------------------------------------NWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSID 239 (548)
Q Consensus 205 ---------------------------------------------~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~ 239 (548)
..+|++++...+ ....+|...+..+.+.|+.+
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p---~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC---FAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHSCCT
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHhcCcHH
Confidence 223333333221 24444445555555556666
Q ss_pred HHH-HHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCCHhhHHHHHHHHhhcCCccC
Q 038673 240 DAY-RIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTET---------KPNGVTFIGVLTACSHVGLKCY 306 (548)
Q Consensus 240 ~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~~~t~~~ll~a~~~~~~~~~ 306 (548)
+|. ++|++... .+...|-..+...-..|+.++|.++|++++.... .|+..+ -+..+..
T Consensus 361 ~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~---~~~~~~~------ 431 (679)
T 4e6h_A 361 TVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES---AINQLKS------ 431 (679)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH---HHHHHHH------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh---hhhhhcc------
Confidence 664 66665542 2334455566666666677777777666654210 011000 0000000
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-C--ChhHHHHHHHHHHh-cCCHHHHHHHHHHHhhcCCCCchhHH
Q 038673 307 GVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVE-P--NGGVWGALLGACQI-HRNPEIAQIAANHLFELEPDKIGNYI 382 (548)
Q Consensus 307 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p--~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~ 382 (548)
-....|...+....+.|..+.|..+|.+.... | ....|......-.+ .++.+.|..+|+.+++..|+++..+.
T Consensus 432 ---~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~ 508 (679)
T 4e6h_A 432 ---KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYIN 508 (679)
T ss_dssp ---HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHH
Confidence 01346888888888999999999999887422 2 23334322222223 45689999999999999999988888
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 383 ILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
..+......|+.+.|..+|++......
T Consensus 509 ~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 509 KYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 899989999999999999999876554
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=1.9e-08 Score=95.49 Aligned_cols=211 Identities=9% Similarity=-0.051 Sum_probs=142.0
Q ss_pred CchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHh----CCCCCC-hhHHHHHHHHHHHcCChHH
Q 038673 32 HLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILL----GGFTSD-LYVGNTMIGMYVKCGFLGC 106 (548)
Q Consensus 32 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~ 106 (548)
++++|.+.|++. ...+...|++++|...+...++. | .+++ ..+++.+..+|.+.|++++
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHH
Confidence 478888888776 33566789999999988888764 2 1222 4578888888888889988
Q ss_pred HHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHC-CChhHHHHHHHHHHHCC----C
Q 038673 107 SRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQN-AKPREAIEYFERMQYAG----V 181 (548)
Q Consensus 107 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g----~ 181 (548)
|...|++. +..+...|+...+ ..+|+.+...|... |++++|+..|++..... -
T Consensus 96 A~~~~~~A-----------l~l~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 96 AVDSLENA-----------IQIFTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHHH-----------HHHHHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-----------HHHHHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 88885432 2222233332222 34677788888886 88888888888776531 1
Q ss_pred CCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChH-----hHHHHHHHHHhcCCCHHHHHHHHhcCCCCChh-
Q 038673 182 ETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNV-----VVGSALIDMYSKCGSIDDAYRIFVGMKQRNVF- 254 (548)
Q Consensus 182 ~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-----~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~- 254 (548)
.+. ..++..+...+...|++++|...++.+.+..... ... ..+..+..+|...|++++|...|++..+-++.
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN-RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC-TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 101 3457778888888899999999998888866542 111 25677788888899999999999887652221
Q ss_pred -------hhHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 038673 255 -------SYSSMILGFA--MHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 255 -------~~~~li~~~~--~~g~~~~A~~l~~~m~~ 281 (548)
.+..++.+|. ..+++++|+..|+++..
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 2334555554 34668888888876544
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=1.8e-09 Score=91.31 Aligned_cols=141 Identities=8% Similarity=-0.009 Sum_probs=113.7
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
|..++...|++++|...+...... +...+..+...|...|++++|++.|++.++ +.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~----------------- 63 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQER----------------- 63 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT-----------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC-----------------
Confidence 556777788899999999887753 345677788899999999999999999988 4555
Q ss_pred cCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHH-HHHHHhhcCCCCchhH
Q 038673 305 CYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQI-AANHLFELEPDKIGNY 381 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~ 381 (548)
+...|..+..+|.+.|++++|...|++.. +.|+ ...|..+...+...|+.++|.+ .++++++++|+++.+|
T Consensus 64 ------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 64 ------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred ------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 44678889999999999999999998874 5665 7788888889999999876555 5699999999999999
Q ss_pred HHHHHHHHHcCC
Q 038673 382 IILSNIYASAGM 393 (548)
Q Consensus 382 ~~l~~~~~~~g~ 393 (548)
.....++...|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 999888888775
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=6.2e-08 Score=90.66 Aligned_cols=181 Identities=13% Similarity=0.041 Sum_probs=131.8
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcC
Q 038673 169 AIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 169 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 248 (548)
|+..|++....+ .++..++..+..++...|++++|.+++...+..+..+ .+...+..++..|.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~-~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAE-GTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST-THHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc-CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777888777655 5566666678888888999999999999887777522 48888899999999999999999999888
Q ss_pred CCCC-------hhhhHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHH
Q 038673 249 KQRN-------VFSYSSMILG--FAMHG--RAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYAC 317 (548)
Q Consensus 249 ~~~~-------~~~~~~li~~--~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~ 317 (548)
.+.+ -.+...++.+ ....| ++.+|..+|+++.+. .|+. .+...
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~------------------------~~~~l 216 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTW------------------------KTQLG 216 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSH------------------------HHHHH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCc------------------------ccHHH
Confidence 7432 3455556655 33334 899999999998763 3331 11223
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-C----------CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 318 MVDLLGRAGCLEEALKMVEKMP-V----------EPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 318 li~~~~~~g~~~~A~~~~~~m~-~----------~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
+..++.+.|++++|.+.++.+. . .|+ +.+...++......|+ .|.++++++.+..|+++.
T Consensus 217 Lln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 217 LLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 3337888899999999987652 1 244 6666566656666676 788999999999999873
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.92 E-value=3.2e-08 Score=80.92 Aligned_cols=129 Identities=17% Similarity=0.246 Sum_probs=111.1
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
..|..+...+...|++++|+.+|+++.+. .|+ +...+..+...+...|++++|..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------~~~~~~~~a~~~~~~~~~~~A~~ 56 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPR-----------------------SAEAWYNLGNAYYKQGDYDEAIE 56 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCc-----------------------chhHHHHHHHHHHHhcCHHHHHH
Confidence 35778888999999999999999999874 232 33457778889999999999999
Q ss_pred HHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 334 MVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 334 ~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.++++. ..| +...|..+...+...|+++.|...++++.+..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 57 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 998874 333 57788888899999999999999999999999999989999999999999999999999988754
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=4.8e-08 Score=79.83 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
.|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++.+.+.... +...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC---chHHHHHHHHH
Confidence 56777888888888999998888887653 345667777888888888999999999888877644 67788888889
Q ss_pred HhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 232 YSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|...|+++...
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999998887753 45677888888899999999999999988763
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.87 E-value=5.8e-08 Score=90.29 Aligned_cols=189 Identities=11% Similarity=-0.010 Sum_probs=144.5
Q ss_pred ChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-C---hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 038673 220 NNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--R-N---VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIG 293 (548)
Q Consensus 220 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 293 (548)
.+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|...|++++|+..|++..+. .|+...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~--- 87 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPR--- 87 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTT---
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCch---
Confidence 4677788888889999999999999998874 3 3 456778888999999999999999999884 343211
Q ss_pred HHHHHhhcCCccCCCCcCHHHHHHHHHHHHH--------cCCHHHHHHHHHhCC-CCCC-hhHH----------------
Q 038673 294 VLTACSHVGLKCYGVSPSTDHYACMVDLLGR--------AGCLEEALKMVEKMP-VEPN-GGVW---------------- 347 (548)
Q Consensus 294 ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~--------~g~~~~A~~~~~~m~-~~p~-~~~~---------------- 347 (548)
....+..+..++.. .|++++|...|++.. ..|+ ...+
T Consensus 88 -----------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~ 150 (261)
T 3qky_A 88 -----------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARK 150 (261)
T ss_dssp -----------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHH
Confidence 12446667777888 999999999998874 3454 3344
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHHc----------CCchHHHHHHHHHHhCCCccCC
Q 038673 348 -GALLGACQIHRNPEIAQIAANHLFELEPDKI---GNYIILSNIYASA----------GMWDDVSRVRRLLKMTGLKKNP 413 (548)
Q Consensus 348 -~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~ 413 (548)
..+...+...|+++.|...++++++..|+++ ..+..++.+|... |++++|...++++.+...
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---- 226 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---- 226 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----
Confidence 3445778999999999999999999999854 5788899999877 889999999998865321
Q ss_pred ceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 038673 414 GYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQA 454 (548)
Q Consensus 414 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 454 (548)
.++...++...+.++...+.+
T Consensus 227 --------------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CChHHHHHHHHHHHHHHHHHH
Confidence 234556676677777666654
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.87 E-value=1.1e-07 Score=89.09 Aligned_cols=236 Identities=10% Similarity=-0.043 Sum_probs=158.9
Q ss_pred hCCChHHHHHHHccCCCCC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHH
Q 038673 131 NNGDMESAGGLFNELPLKD-KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCE 209 (548)
Q Consensus 131 ~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 209 (548)
-.|.+..++.-...+...+ ...-.-+.++|...|++... ..-.|....+..+. .|...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HHHHHH
Confidence 4455555555444443222 22333345777777777642 11233333333333 233322 566777
Q ss_pred HHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC-----ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 038673 210 IAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR-----NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTET 284 (548)
Q Consensus 210 ~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 284 (548)
.....+.. +..+...+..+|...|++++|.+++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+ .
T Consensus 91 ~l~~~~~~---~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 91 NLLKDKQN---SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HTTTTSCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66665522 4555568999999999999999999987432 456777888999999999999999999987 4
Q ss_pred CCC-----HhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcC
Q 038673 285 KPN-----GVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPNGGVWGALLGACQIHR 358 (548)
Q Consensus 285 ~p~-----~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~ 358 (548)
.|| ..+...+..+ .+......++..+|..+|+++. ..|+..+-..++.++.+.|
T Consensus 166 ~~d~~~~~d~~l~~Laea--------------------~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g 225 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAES--------------------YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQR 225 (310)
T ss_dssp SCHHHHHHHHHHHHHHHH--------------------HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHT
T ss_pred CccccccchHHHHHHHHH--------------------HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcC
Confidence 562 3333222222 2223333448999999999985 3355344455666899999
Q ss_pred CHHHHHHHHHHHhhc----------CCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 359 NPEIAQIAANHLFEL----------EPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 359 ~~~~a~~~~~~~~~~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
++++|+..++.+.+. +|+++.++..++......|+ +|.++++++++.
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 999999999988876 58899888888888888887 889999998764
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.85 E-value=2.7e-07 Score=87.33 Aligned_cols=213 Identities=8% Similarity=-0.023 Sum_probs=145.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCCC-hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCC----hh
Q 038673 19 LWTALIRGYILQGHLKDSISLYCSMRRE----GIGPV-SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSD----LY 89 (548)
Q Consensus 19 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 89 (548)
.|+.....|...|++++|++.|++..+. |-+++ ..+|+.+...+...|++++|...++..++...-..+ ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5777788899999999999999988763 32222 467889999999999999999999988774200011 34
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCC--ChhHHHHHHHHHHHCCCh
Q 038673 90 VGNTMIGMYVKC-GFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLK--DKVAWTAMVTGYVQNAKP 166 (548)
Q Consensus 90 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~ 166 (548)
+++.+..+|... |++++|...|++ |++++.....+ ...+|+.+...|.+.|++
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~------------------------Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYEL------------------------AGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH------------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH------------------------HHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 566677777774 777777776433 33333322111 134678888899999999
Q ss_pred hHHHHHHHHHHHCCCCCCHh------hHHHHHHHHHccCChhHHHHHHHHHHHcCCCC--CChHhHHHHHHHHHh--cCC
Q 038673 167 REAIEYFERMQYAGVETDYV------TLVGVISACAQLGVIKYANWVCEIAEGSGFGP--INNVVVGSALIDMYS--KCG 236 (548)
Q Consensus 167 ~~A~~l~~~m~~~g~~p~~~------t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~~~li~~y~--~~g 236 (548)
++|+..|++........... .+..+..++...|++++|...++...+..+.- ......+..++..|. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999988754322211 45667778888999999999999887644321 001223455666665 567
Q ss_pred CHHHHHHHHhcCCCCChhh
Q 038673 237 SIDDAYRIFVGMKQRNVFS 255 (548)
Q Consensus 237 ~~~~A~~~~~~~~~~~~~~ 255 (548)
++++|.+.|+.+...++..
T Consensus 255 ~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp THHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHhccCCccHHHH
Confidence 8999999999998766543
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=9.5e-09 Score=109.54 Aligned_cols=169 Identities=11% Similarity=-0.041 Sum_probs=109.0
Q ss_pred HccCChhHHHHHHHHHH--------HcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHH
Q 038673 196 AQLGVIKYANWVCEIAE--------GSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFA 264 (548)
Q Consensus 196 ~~~g~~~~a~~~~~~~~--------~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 264 (548)
...|++++|.+.++.+. +.. | .+...+..+...|.+.|++++|.+.|+++.+ .+...|..+...|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--S-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--T-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--c-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 55667777777777766 333 3 3566677777777777777777777776653 35556666777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC
Q 038673 265 MHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN 343 (548)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 343 (548)
..|++++|+..|++..+ +.|+ +...|..+..+|.+.|++++ ++.|++.- ..|+
T Consensus 479 ~~g~~~~A~~~~~~al~--l~P~-----------------------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~ 532 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLD--TFPG-----------------------ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG 532 (681)
T ss_dssp HHTCHHHHHHHHHHHHH--HSTT-----------------------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred HcCCHHHHHHHHHHHHH--hCCC-----------------------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence 77777777777777766 3343 23446666666777777777 66666552 3443
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 038673 344 -GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGM 393 (548)
Q Consensus 344 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 393 (548)
...|..+..++...|++++|...++++++++|++..++..++.+|...|+
T Consensus 533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 533 VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 55666666777777777777777777777777777677777777655544
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=1.5e-07 Score=100.23 Aligned_cols=190 Identities=11% Similarity=0.003 Sum_probs=150.3
Q ss_pred HHCCChhHHHHHHHHHH--------HCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 161 VQNAKPREAIEYFERMQ--------YAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 161 ~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|...++.+.+.... +...+..+...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW---RWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---CHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc---hHHHHHHHHHHH
Confidence 78899999999999987 321 334567788888999999999999999999988755 889999999999
Q ss_pred hcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCC
Q 038673 233 SKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVS 309 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 309 (548)
.+.|++++|.+.|++..+ .+...|..+...|...|++++ ++.|++..+ +.|+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~---------------------- 532 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDG---------------------- 532 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTT----------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCc----------------------
Confidence 999999999999998763 466789999999999999999 999999988 3455
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCC-----HHHHHHHHHHHhhcCCCCchh
Q 038673 310 PSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRN-----PEIAQIAANHLFELEPDKIGN 380 (548)
Q Consensus 310 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~ 380 (548)
+...|..+..+|.+.|++++|.+.|++.. ..|+ ...|..+..++...++ .+...++.+.+.++.+..+..
T Consensus 533 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 533 -VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 34568889999999999999999999986 6677 5667666677666555 344555555555555555543
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.80 E-value=4e-08 Score=91.38 Aligned_cols=213 Identities=14% Similarity=-0.034 Sum_probs=114.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD---YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVG 225 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 225 (548)
+...+-.+...+.+.|++++|+..|+++.+.. +-+ ...+..+..++...|++++|...++.+++..+.......++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555555556666666666666666665432 111 33444455555555555555555555555432200123333
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCcc
Q 038673 226 SALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKC 305 (548)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 305 (548)
..+..+|.+.+. + .+...|++++|+..|++.++. .|+.......+.......
T Consensus 93 ~~lg~~~~~~~~--------------~---------~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~--- 144 (261)
T 3qky_A 93 YERAMCYYKLSP--------------P---------YELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELR--- 144 (261)
T ss_dssp HHHHHHHHHHCC--------------C---------TTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhcc--------------c---------ccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHH---
Confidence 333333333100 0 000066777777777777663 343221110000000000
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhc----------CCHHHHHHHHHHH
Q 038673 306 YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN----GGVWGALLGACQIH----------RNPEIAQIAANHL 370 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~ 370 (548)
.-....+..+...|.+.|++++|...|++.. ..|+ ...+..+..++... |++++|...++++
T Consensus 145 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 145 ---AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 0001224567788999999999999998873 3344 34566666777655 8899999999999
Q ss_pred hhcCCCCch---hHHHHHHHHHHcCC
Q 038673 371 FELEPDKIG---NYIILSNIYASAGM 393 (548)
Q Consensus 371 ~~~~p~~~~---~~~~l~~~~~~~g~ 393 (548)
++..|+++. +...+..++.+.|+
T Consensus 222 ~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 222 LQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999863 33344444444333
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.78 E-value=1.4e-07 Score=84.48 Aligned_cols=178 Identities=12% Similarity=0.080 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVT-LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALID 230 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~ 230 (548)
.+-.....+.+.|++++|+..|++..+. .|+... +.. . ... .... ......+.+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~--------------~~~~--~~~~~~~~lg~ 62 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVD--------------KNSE--ISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSC--------------TTSH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhc--------------chhh--hhHHHHHHHHH
Confidence 3344445666777777777777776654 343221 111 0 000 0000 12333445888
Q ss_pred HHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 231 MYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 231 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
.|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.++ +.|+
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~-------------------- 120 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEAD-------------------- 120 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT--------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCC--------------------
Confidence 88999999999999988763 4667888888999999999999999999988 4555
Q ss_pred CCcCHHHHHHHHHHHHHcCC--HHHHHHHHHhCCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 308 VSPSTDHYACMVDLLGRAGC--LEEALKMVEKMPVEPNGG--VWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
+...|..+...|...|. .+.+...++... .|+.. .+..+-.++...|++++|...+++++++.|++.
T Consensus 121 ---~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 121 ---NLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred ---CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 34456777777655543 445666666654 45543 333344556678899999999999999999743
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.77 E-value=3.3e-07 Score=86.49 Aligned_cols=158 Identities=13% Similarity=-0.024 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CChhhhHHH-HHH
Q 038673 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNVFSYSSM-ILG 262 (548)
Q Consensus 186 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~ 262 (548)
..+..+...+...|++++|...++.+.+..+. +...+..+...|.+.|++++|...++++.. |+....... ...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34445555556666666666666666665533 556666666666666666666666666553 222111111 111
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038673 263 FAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEP 342 (548)
Q Consensus 263 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 342 (548)
+...++.++|+..|++... ..|
T Consensus 195 l~~~~~~~~a~~~l~~al~----------------------------------------------------------~~P 216 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVA----------------------------------------------------------ENP 216 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHH----------------------------------------------------------HCT
T ss_pred HHhhcccCccHHHHHHHHh----------------------------------------------------------cCC
Confidence 2333333334444433333 234
Q ss_pred C-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--chhHHHHHHHHHHcCCchHHHHHHHHH
Q 038673 343 N-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDK--IGNYIILSNIYASAGMWDDVSRVRRLL 404 (548)
Q Consensus 343 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m 404 (548)
+ ...+..+...+...|++++|...++++++.+|++ ...+..|+.+|...|+.++|...+++.
T Consensus 217 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 217 EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3 5666677777778888888888888888888876 677888888888888888888777654
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=5.8e-07 Score=81.43 Aligned_cols=208 Identities=13% Similarity=-0.014 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSA 227 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 227 (548)
...+..+...+.+.|++++|+..|+++.+... .|. ...+..+..++.+.|++++|...++.+++..+....-..++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44566677778888888888888888876421 111 2456677778888888888888888888766441011124444
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCC
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYG 307 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 307 (548)
+..+|.+.|.. .+ ..|..+...+...|+.++|+..|+++++ ..|+....
T Consensus 84 ~g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a---------------- 132 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYT---------------- 132 (225)
T ss_dssp HHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHT--TCTTCTTH----------------
T ss_pred HHHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhH----------------
Confidence 55555443321 11 1122333445567889999999999887 34553321
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc---hhHHHH
Q 038673 308 VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI---GNYIIL 384 (548)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l 384 (548)
+.....+ +...... ......+...+...|+++.|...++++++..|+++ .++..+
T Consensus 133 -------~~a~~~l----~~~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 190 (225)
T 2yhc_A 133 -------TDATKRL----VFLKDRL-----------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM 190 (225)
T ss_dssp -------HHHHHHH----HHHHHHH-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred -------HHHHHHH----HHHHHHH-----------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHH
Confidence 1111000 0000000 00112344667889999999999999999999875 568899
Q ss_pred HHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 385 SNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 385 ~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
+.+|.+.|++++|.+.++.+...+..
T Consensus 191 ~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 191 ENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 99999999999999999988876543
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.75 E-value=1.1e-07 Score=82.41 Aligned_cols=157 Identities=10% Similarity=-0.007 Sum_probs=112.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACS 299 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 299 (548)
.....+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.. +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~-------- 75 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-Y-------- 75 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-H--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-H--------
Confidence 3455667778888888888888888774 35667888888888888888888888877653 33221 1
Q ss_pred hcCCccCCCCcCHHHHHHHHHH-HHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038673 300 HVGLKCYGVSPSTDHYACMVDL-LGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPD 376 (548)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 376 (548)
+..+... +...+...+|...+++.. ..|+ ...+..+...+...|++++|...++++++.+|+
T Consensus 76 ---------------~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 76 ---------------KSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp ---------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred ---------------HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 1111111 112122233566665542 4565 778888889999999999999999999999987
Q ss_pred C--chhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 377 K--IGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 377 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
. +..+..++.+|...|+.++|...+++..
T Consensus 141 ~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 141 AQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 5 5589999999999999999999988764
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=1.3e-07 Score=79.58 Aligned_cols=102 Identities=12% Similarity=-0.054 Sum_probs=90.6
Q ss_pred CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 038673 307 GVSP-STDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYII 383 (548)
Q Consensus 307 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 383 (548)
.+.| +...+..+...+.+.|++++|.+.|++.. ..|+ ...|..+-.++...|++++|...|+++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4444 45567788889999999999999999884 4564 8889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 384 LSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 384 l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
++.+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987643
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.70 E-value=3e-07 Score=82.18 Aligned_cols=129 Identities=12% Similarity=0.021 Sum_probs=102.3
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc
Q 038673 155 AMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK 234 (548)
Q Consensus 155 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~ 234 (548)
.+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+++..+. +..++..+...|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD---NLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHH
Confidence 38889999999999999999998764 346778889999999999999999999999998755 88899999998876
Q ss_pred CCC--HHHHHHHHhcCCCCChhh--hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 038673 235 CGS--IDDAYRIFVGMKQRNVFS--YSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGV 289 (548)
Q Consensus 235 ~g~--~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 289 (548)
.|. .+.+...+.....++... |..+..++...|++++|+..|++.++ +.|+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 654 456777888887766543 34445566778999999999999987 566654
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.70 E-value=2.1e-07 Score=97.20 Aligned_cols=160 Identities=13% Similarity=-0.030 Sum_probs=122.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHH
Q 038673 198 LGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 198 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 274 (548)
.|++++|.+.++++.+.... +...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999999887644 889999999999999999999999998764 456789999999999999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHH
Q 038673 275 LFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLG 352 (548)
Q Consensus 275 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~ 352 (548)
.|++..+. .|+ +...+..+..+|.+.|++++|.+.+++.. ..|+ ...+..+..
T Consensus 79 ~~~~al~~--~p~-----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 79 LLQQASDA--APE-----------------------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp HHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhc--CCC-----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999883 444 34678899999999999999999999874 4454 678888889
Q ss_pred HHHhc---CCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 353 ACQIH---RNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 353 ~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
.+... |+.++|...++++++.+|.+...+..+.
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99999 9999999999999999999888887766
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=1.7e-07 Score=97.96 Aligned_cols=148 Identities=11% Similarity=-0.006 Sum_probs=111.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHH
Q 038673 163 NAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAY 242 (548)
Q Consensus 163 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~ 242 (548)
.|++++|+..|++..+.. +-+...+..+...+...|++++|.+.++++.+.... +..++..+...|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG---HPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999887653 335678888999999999999999999999987654 8889999999999999999999
Q ss_pred HHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHH
Q 038673 243 RIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMV 319 (548)
Q Consensus 243 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li 319 (548)
+.|++..+ .+...|..+...|...|++++|++.|++..+. .|+ +...+..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-----------------------~~~~~~~l~ 132 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPE-----------------------EPYITAQLL 132 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------------CHHHHHHHH
Confidence 99998763 45678999999999999999999999999873 343 345688899
Q ss_pred HHHHHc---CCHHHHHHHHHhCC
Q 038673 320 DLLGRA---GCLEEALKMVEKMP 339 (548)
Q Consensus 320 ~~~~~~---g~~~~A~~~~~~m~ 339 (548)
..+... |+.++|.+.+++..
T Consensus 133 ~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 133 NWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhhccccHHHHHHHHHHHH
Confidence 999999 99999999998773
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.67 E-value=3.3e-07 Score=79.48 Aligned_cols=154 Identities=10% Similarity=0.022 Sum_probs=95.9
Q ss_pred HHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHcc
Q 038673 123 TELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISA-CAQL 198 (548)
Q Consensus 123 ~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~ 198 (548)
..+...+.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.... .|+.......... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 334445555566666666665554 224556666666666677777777666665443 2232222111111 1122
Q ss_pred CChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CC---hhhhHHHHHHHHhcCCHHHHH
Q 038673 199 GVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RN---VFSYSSMILGFAMHGRAHAAI 273 (548)
Q Consensus 199 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~ 273 (548)
+....+...++.+.+..+. +...+..+...|...|++++|...|+++.+ |+ ...+..+...+...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~~~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPD---NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2333467777777776544 778888888888888888888888887764 22 346778888888888888888
Q ss_pred HHHHHHHH
Q 038673 274 QLFGDMVK 281 (548)
Q Consensus 274 ~l~~~m~~ 281 (548)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.65 E-value=1.3e-06 Score=78.18 Aligned_cols=160 Identities=10% Similarity=-0.074 Sum_probs=106.8
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-CChhhhHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-RNVFSYSSMILGFAMHG----RAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
++..+..|..+|...+++++|.+.|++..+ .++..+..|-..|.. + +.++|+..|++..+.|
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g------------ 83 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG------------ 83 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT------------
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC------------
Confidence 444555555555555556666555555442 244445555555554 4 6777777777765532
Q ss_pred HHHhhcCCccCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHhCC-CCCC---hhHHHHHHHHHHh----cCCHHHH
Q 038673 296 TACSHVGLKCYGVSPSTDHYACMVDLLGR----AGCLEEALKMVEKMP-VEPN---GGVWGALLGACQI----HRNPEIA 363 (548)
Q Consensus 296 ~a~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~----~~~~~~a 363 (548)
+...+..|..+|.. .+++++|.+.|++.- ..|+ +..+..|-..+.. .++.++|
T Consensus 84 ---------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 84 ---------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp ---------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred ---------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 22345555556655 678888888887765 3342 6777777777777 7789999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHc-C-----CchHHHHHHHHHHhCCC
Q 038673 364 QIAANHLFELEPDKIGNYIILSNIYASA-G-----MWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 364 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 409 (548)
...+++..+. |.++..+..|+.+|... | ++++|...+++..+.|.
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999998887 66667888899888765 3 78999999998877665
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.65 E-value=5.9e-06 Score=84.07 Aligned_cols=336 Identities=7% Similarity=-0.135 Sum_probs=203.5
Q ss_pred CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC-cHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHH----HcCCh
Q 038673 31 GHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLD-VSLGQQIHAQTILLGGF-TSDLYVGNTMIGMYV----KCGFL 104 (548)
Q Consensus 31 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~----~~g~~ 104 (548)
|+++.+..+|++.... .|+...|..-++...+.++ .+....+|+.++..-|. +.+..+|...+..+. ..|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999998873 5788888888877766653 45677888888876323 346678888877654 34678
Q ss_pred HHHHHHHccCCC-CC--e-ehHHHHHHHHH-------------hCCChHHHHHHHccCC----CCChhHHHHHHHHHHHC
Q 038673 105 GCSRKVFDEMPE-RD--V-VSWTELIVAYA-------------NNGDMESAGGLFNELP----LKDKVAWTAMVTGYVQN 163 (548)
Q Consensus 105 ~~A~~~~~~m~~-~~--~-~~~~~li~~~~-------------~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~ 163 (548)
+.++++|++... |. . ..|......-. ..+.+..|..+++.+. ..+...|...+.--..+
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 889999888754 21 1 11221111000 0011222232222221 12444666655543322
Q ss_pred C--C-----hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCC
Q 038673 164 A--K-----PREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 164 g--~-----~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g 236 (548)
+ - .+.+..+|+++.... +-+...|...+.-+...|+++.|..++++++.. | .+...+...... .+.+
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P-~~~~l~~~y~~~-~e~~ 259 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---S-DGMFLSLYYGLV-MDEE 259 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C-CSSHHHHHHHHH-TTCT
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---C-CcHHHHHHHHhh-cchh
Confidence 1 1 234677888887743 445666776777778889999999999999988 3 344444433222 1111
Q ss_pred CHHHHHHHHhcCC------------CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc
Q 038673 237 SIDDAYRIFVGMK------------QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 237 ~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
.. ...+.+... ......|-..+....+.+..+.|..+|++. .. |. .++
T Consensus 260 ~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~-~~~------------- 319 (493)
T 2uy1_A 260 AV--YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN---EG-VGP------------- 319 (493)
T ss_dssp HH--HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SC-CCH-------------
T ss_pred HH--HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CC-CCh-------------
Confidence 11 111221110 011245777777777788899999999988 31 22 121
Q ss_pred cCCCCcCHHHHHHHHHHHHH-cCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 305 CYGVSPSTDHYACMVDLLGR-AGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
..|...+..-.+ .++.+.|..+|+..- .-|+ +..|...+......|+.+.|..+++++ +.....+
T Consensus 320 --------~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw 387 (493)
T 2uy1_A 320 --------HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMW 387 (493)
T ss_dssp --------HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHH
T ss_pred --------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHH
Confidence 223322222222 336899999998762 1233 455667777778889999999999997 3355677
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 382 IILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
...+..-...|+.+.+..+++++.+
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7787777888999999988877763
No 109
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=1.1e-07 Score=89.44 Aligned_cols=192 Identities=10% Similarity=-0.120 Sum_probs=122.8
Q ss_pred HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHH
Q 038673 185 YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMIL 261 (548)
Q Consensus 185 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 261 (548)
...+..+...+...|++++|...++.+++.... +...+..+...|.+.|++++|...+++..+ .+...|..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345555666667777777777777777766543 677777888888888888888888877664 34567777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVE 341 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 341 (548)
+|...|++++|+..|++..+. .|+... .+ ....+..+ ...+...+.. .......
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~----------------~~--~~~~~~~~--~~~~~~~~~~----~~~~~~~ 134 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRL----------------NF--GDDIPSAL--RIAKKKRWNS----IEERRIH 134 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTC----------------CC--CSHHHHHH--HHHHHHHHHH----HHHTCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHh--Cccchh----------------hH--HHHHHHHH--HHHHHHHHHH----HHHHHHh
Confidence 888888888888888887763 222110 00 01111111 1122212222 2222323
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHc-CCchHHHHHHHHHHhC
Q 038673 342 PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASA-GMWDDVSRVRRLLKMT 407 (548)
Q Consensus 342 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 407 (548)
++......+ ..+. .|+.+.|.+.++...+++|++......+...+.+. +++++|.++|....+.
T Consensus 135 ~~~~i~~~l-~~l~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 135 QESELHSYL-TRLI-AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCCHHHHHH-HHHH-HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhHHHHHHH-HHHH-HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344443333 3332 68889999999999999998877777777777776 6789999999887653
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=3.2e-06 Score=75.47 Aligned_cols=132 Identities=8% Similarity=-0.085 Sum_probs=110.7
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhc
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV 301 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 301 (548)
...+..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..+. .|+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~-------------- 69 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKH-------------- 69 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc--------------
Confidence 3456677888899999999999999998888899999999999999999999999998874 343
Q ss_pred CCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-----------------hhHHHHHHHHHHhcCCHHHH
Q 038673 302 GLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-----------------GGVWGALLGACQIHRNPEIA 363 (548)
Q Consensus 302 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-----------------~~~~~~ll~~~~~~~~~~~a 363 (548)
+...|..+..+|...|++++|.+.|++.. ..|+ ...|..+..++...|+++.|
T Consensus 70 ---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 70 ---------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 34568888899999999999999998763 2232 26777788899999999999
Q ss_pred HHHHHHHhhcCCCCc
Q 038673 364 QIAANHLFELEPDKI 378 (548)
Q Consensus 364 ~~~~~~~~~~~p~~~ 378 (548)
...++++++..|++.
T Consensus 141 ~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 141 EEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHcCcccc
Confidence 999999999999763
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.60 E-value=5.9e-06 Score=77.96 Aligned_cols=215 Identities=14% Similarity=0.078 Sum_probs=161.3
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHccC--ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH----hc
Q 038673 162 QNAKPREAIEYFERMQYAGVETDY-VTLVGVISACAQLG--VIKYANWVCEIAEGSGFGPINNVVVGSALIDMY----SK 234 (548)
Q Consensus 162 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y----~~ 234 (548)
+....++|+.+++++... .|+. ..++.--..+...+ .++++.++++.++...+. +..+|+.-...+ .+
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk---~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK---NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT---CCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc---cHHHHHHHHHHHHHHHHh
Confidence 334456899999988875 4544 44666666777777 899999999999988765 666776655555 44
Q ss_pred C---CCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccC
Q 038673 235 C---GSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAH--AAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCY 306 (548)
Q Consensus 235 ~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 306 (548)
. ++++++..+++.+.+ +|..+|+--.-.+...|.++ ++++.++++++. .|.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~------------------- 178 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLK------------------- 178 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTT-------------------
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCC-------------------
Confidence 5 788999999988874 56677877777777788888 999999999984 332
Q ss_pred CCCcCHHHHHHHHHHHHHcCC------HHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCH-HHHHHHHHHHhhcC---
Q 038673 307 GVSPSTDHYACMVDLLGRAGC------LEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNP-EIAQIAANHLFELE--- 374 (548)
Q Consensus 307 ~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~--- 374 (548)
|...|+.-..++.+.|+ ++++++.++++- ..| |...|+.+-..+.+.|+. +....+++++.+++
T Consensus 179 ----N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 179 ----NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp ----CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred ----CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 33445554455555555 888888887763 345 588898888888887774 44667788777766
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 375 PDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 375 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
|.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 78888999999999999999999999999875
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.59 E-value=8.1e-07 Score=83.80 Aligned_cols=162 Identities=9% Similarity=-0.019 Sum_probs=110.1
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-CeehHHHHHHHHHhCCChHHHHHHHccCCC--CChhHH-HHHH
Q 038673 84 FTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE--R-DVVSWTELIVAYANNGDMESAGGLFNELPL--KDKVAW-TAMV 157 (548)
Q Consensus 84 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~-~~li 157 (548)
.+.+...+..+...+.+.|++++|...|++..+ | +...+..+...+.+.|++++|...|++... |+.... ....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 345556666677777777777777777776653 3 455666777777777777777777777753 333222 2222
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC
Q 038673 158 TGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS 237 (548)
Q Consensus 158 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~ 237 (548)
..+.+.++.++|+..|++..... +.+...+..+..++...|++++|...+..+++..+.. .+...+..|+..|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~-~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA-ADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG-GGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-ccchHHHHHHHHHHHcCC
Confidence 34566677777888887776653 3456667777778888888888888888888776541 236778888888888888
Q ss_pred HHHHHHHHhc
Q 038673 238 IDDAYRIFVG 247 (548)
Q Consensus 238 ~~~A~~~~~~ 247 (548)
.++|...|++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 8877777654
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=1.8e-06 Score=77.16 Aligned_cols=126 Identities=16% Similarity=-0.093 Sum_probs=79.9
Q ss_pred HHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChh
Q 038673 123 TELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIK 202 (548)
Q Consensus 123 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 202 (548)
..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445556666666666666666666666677777777777777777777777766543 334556666666777777777
Q ss_pred HHHHHHHHHHHcCCC--------------CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 038673 203 YANWVCEIAEGSGFG--------------PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 203 ~a~~~~~~~~~~~~~--------------p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 250 (548)
+|.+.++.+.+.... | ....++..+...|.+.|++++|...|+...+
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKL-FACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEE-EHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCc-cchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777664432 1 1235566666666666666666666665543
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=7.3e-07 Score=72.46 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=66.6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKM 334 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 334 (548)
.|......|.+.|++++|++.|++.++ +.|+ +...|..+..+|.+.|++++|++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~-----------------------~~~~~~~~~~~~~~~~~~~~A~~~ 69 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPE-----------------------NAILYSNRAACLTKLMEFQRALDD 69 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC-----------------------CHHHHHHHhhHHHhhccHHHHHHH
Confidence 345555666666777777777766665 2333 334466666666677777777776
Q ss_pred HHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 335 VEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 335 ~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
+++.. +.|+ ...|..+..++...|++++|...++++++++|+++.++..|.+
T Consensus 70 ~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 70 CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 66552 3333 5566666666777777777777777777777776655555543
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.56 E-value=1.8e-07 Score=78.73 Aligned_cols=133 Identities=11% Similarity=-0.042 Sum_probs=68.8
Q ss_pred HcCChHHHHHHHccCCCC---CeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHH
Q 038673 100 KCGFLGCSRKVFDEMPER---DVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYF 173 (548)
Q Consensus 100 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 173 (548)
..|++++|...|+..... +...+-.+...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..|
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 334445555444444331 22233344444445555555555444432 335556666666666666666666666
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCChhHHHH-HHHHHHHcCCCCCChHhHHHHHHHHHhcCC
Q 038673 174 ERMQYAGVETDYVTLVGVISACAQLGVIKYANW-VCEIAEGSGFGPINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 174 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~-~~~~~~~~~~~p~~~~~~~~~li~~y~~~g 236 (548)
++..+.. +-+...+..+...+.+.|+.+++.+ +++.+.+..+. ++.+|......+.+.|
T Consensus 89 ~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~---~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 89 RRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG---SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT---CHHHHHHHHHHHHTCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHhC
Confidence 6665542 2234455566666666666654443 34555555433 5556655555555544
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.55 E-value=3e-07 Score=87.75 Aligned_cols=186 Identities=11% Similarity=-0.029 Sum_probs=125.7
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCC---CCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-------C--ChhhhHHH
Q 038673 192 ISACAQLGVIKYANWVCEIAEGSGFG---PINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-------R--NVFSYSSM 259 (548)
Q Consensus 192 l~~~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l 259 (548)
...+...|++++|...+..+.+.... |.....+++.+...|.+.|++++|...|++..+ + -..+++.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566778888888888777543211 001355788888888888988888887776542 1 13467778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 260 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
...|.. |++++|+..|++..+.....+... ....++..+...|.+.|++++|++.|++..
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~-------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLR-------------------QAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH-------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChh-------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888 999999999998876310000000 013467888899999999999999998763
Q ss_pred -C---CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh-----HHHHHHHHHHcCCchHHHH
Q 038673 340 -V---EPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGN-----YIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 340 -~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 399 (548)
+ .++ ...+..+..++...|+++.|...+++.+ +.|..... ...++..+ ..|+.+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 1 112 2255556667778899999999999999 88875432 33455555 5677665555
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.54 E-value=3e-06 Score=76.66 Aligned_cols=60 Identities=13% Similarity=0.027 Sum_probs=50.3
Q ss_pred ehHHHHHHHHHhCCChHHHHHHHccCCC--CC----hhHHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 038673 120 VSWTELIVAYANNGDMESAGGLFNELPL--KD----KVAWTAMVTGYVQNAKPREAIEYFERMQYA 179 (548)
Q Consensus 120 ~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 179 (548)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4556677789999999999999998762 32 357888899999999999999999999875
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.53 E-value=2.5e-06 Score=76.43 Aligned_cols=159 Identities=13% Similarity=-0.026 Sum_probs=76.9
Q ss_pred hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC----ChHHHHHHHccCCC-CCeehHHHHH
Q 038673 52 SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCG----FLGCSRKVFDEMPE-RDVVSWTELI 126 (548)
Q Consensus 52 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~-~~~~~~~~li 126 (548)
..++..+...+...+++++|...++...+.| +...+..|..+|.. + ++++|.+.|++..+ .+..++..|.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg 92 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3334444444444444444444444444333 23333334444433 3 44444444443322 1223333333
Q ss_pred HHHHh----CCChHHHHHHHccCCCCC-----hhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038673 127 VAYAN----NGDMESAGGLFNELPLKD-----KVAWTAMVTGYVQ----NAKPREAIEYFERMQYAGVETDYVTLVGVIS 193 (548)
Q Consensus 127 ~~~~~----~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 193 (548)
..|.. .+++++|..+|++..+.+ +.++..|...|.. .+++++|+.+|++..+. ..+...+..+..
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGM 170 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHH
Confidence 33333 444555555555544322 4566666666666 66777777777776654 123334445555
Q ss_pred HHHcc-C-----ChhHHHHHHHHHHHcCCC
Q 038673 194 ACAQL-G-----VIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 194 ~~~~~-g-----~~~~a~~~~~~~~~~~~~ 217 (548)
.|... | +.++|...++...+.|..
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 55432 2 677777777777666643
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.52 E-value=2.3e-06 Score=81.49 Aligned_cols=120 Identities=5% Similarity=-0.121 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHccCChhHHHHHHHHHHHcC----CCCCCh
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYA----GVET-DYVTLVGVISACAQLGVIKYANWVCEIAEGSG----FGPINN 221 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~ 221 (548)
.+++.+...|.. |++++|+..|++.... |-.+ ...++..+...+...|++++|...++.+.+.. ..+ ..
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~ 194 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP-TC 194 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh-HH
Confidence 456677777777 8888888888776542 1111 13456677777788888888888888776532 111 11
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCCCCh--------hhhHHHHHHHHhcCCHHHHHH
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQRNV--------FSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~ 274 (548)
...+..++..|...|++++|...|++.. .++ .....++.++ ..|+.+.+.+
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 2356667777777788888888887765 221 1233444444 4566555544
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.52 E-value=2.3e-05 Score=73.90 Aligned_cols=215 Identities=5% Similarity=-0.092 Sum_probs=143.4
Q ss_pred CCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccC--CcHHHHHHHHHHHHhCCCCCChhHHHHHHHHH----HHcCC
Q 038673 31 GHLKDSISLYCSMRREGIGPVS-FTLSALFKACTEVL--DVSLGQQIHAQTILLGGFTSDLYVGNTMIGMY----VKCGF 103 (548)
Q Consensus 31 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~ 103 (548)
...++|+++++.++. +.|+. ..|+.--..+...+ +++++...++.+++.. +.+..+|+.--..+ .+.+
T Consensus 47 e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~- 121 (306)
T 3dra_A 47 EYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNN- 121 (306)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhcc-
Confidence 334567777777776 34543 34565555555666 6777777777777664 55555665544444 3330
Q ss_pred hHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChh--HHHHHHHHHHH
Q 038673 104 LGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPR--EAIEYFERMQY 178 (548)
Q Consensus 104 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~ 178 (548)
..+++++++++++++. .++..+|+.-.-.+.+.|.++ ++++.++++.+
T Consensus 122 ---------------------------~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~ 174 (306)
T 3dra_A 122 ---------------------------NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID 174 (306)
T ss_dssp ---------------------------TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred ---------------------------ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 0034444444444443 446667777777777777777 88888888887
Q ss_pred CCCCCCHhhHHHHHHHHHccCC------hhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHH-HHHHHhcCCC-
Q 038673 179 AGVETDYVTLVGVISACAQLGV------IKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD-AYRIFVGMKQ- 250 (548)
Q Consensus 179 ~g~~p~~~t~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~-A~~~~~~~~~- 250 (548)
.. +-|...++.-.....+.+. ++++.+.+..++...+. +...|+-+...+.+.|+... +..+..++.+
T Consensus 175 ~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~---n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 175 TD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ---NPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred hC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC---CccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 64 3366666665555556665 78888888888887755 89999988888888887443 4455555442
Q ss_pred -----CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 251 -----RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 251 -----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
++...+..+...|.+.|+.++|+++++.+.+
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 3567788888899999999999999999875
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=2.6e-06 Score=68.25 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=91.8
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
...|..+...+...|++++|++.|+++.+. .|+ +...+..+...+.+.|++++|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------~~~~~~~la~~~~~~~~~~~A~ 63 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPN-----------------------NAEAWYNLGNAYYKQGDYDEAI 63 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC-----------------------cHHHHHHHHHHHHHhCCHHHHH
Confidence 456777888888899999999999988774 232 3345777888888999999999
Q ss_pred HHHHhCC-CC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 038673 333 KMVEKMP-VE-PNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAG 392 (548)
Q Consensus 333 ~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 392 (548)
.+++++. .. .+..+|..+...+...|+++.|...++++.+..|+++..+..++.++...|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 64 EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9998774 23 357778888888999999999999999999999998888888887776543
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.47 E-value=2.7e-06 Score=72.36 Aligned_cols=127 Identities=8% Similarity=0.022 Sum_probs=104.3
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
..|..+...+...|++++|+..|++..+. .|+ +...+..+...+...|++++|.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~-----------------------~~~~~~~~a~~~~~~~~~~~A~~ 68 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPS-----------------------NAIYYGNRSLAYLRTECYGYALG 68 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC-----------------------ChHHHHHHHHHHHHcCCHHHHHH
Confidence 45777788888999999999999998873 333 34567788889999999999999
Q ss_pred HHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH--HHHcCCchHHHHHHHHHH
Q 038673 334 MVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI--YASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 334 ~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~ 405 (548)
.+++.. ..| +...|..+..++...|+++.|...++++++..|.+...+..+..+ +...|++++|.+.+....
T Consensus 69 ~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 69 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 998773 344 477888888899999999999999999999999988777544444 888899999999988764
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.46 E-value=1.7e-06 Score=70.31 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
...+......|.+.|++++|++.|++.. ..| +...|..+..++...|+++.|+..++++++++|+++.+|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3567788899999999999999999873 455 47888888899999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHh
Q 038673 390 SAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 390 ~~g~~~~a~~~~~~m~~ 406 (548)
..|++++|.+.+++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999998865
No 124
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.45 E-value=2.2e-05 Score=79.84 Aligned_cols=333 Identities=10% Similarity=-0.017 Sum_probs=207.1
Q ss_pred cchHHHhccCC--CCCcchHHHHHHHHHhCCC-chHHHHHHHHHHHC-CCCC-ChhhHHHHHHHhh----ccCCcHHHHH
Q 038673 3 SFPRLVFEQVK--YKNPFLWTALIRGYILQGH-LKDSISLYCSMRRE-GIGP-VSFTLSALFKACT----EVLDVSLGQQ 73 (548)
Q Consensus 3 ~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~~~~~ll~a~~----~~~~~~~a~~ 73 (548)
+.|+.+|++-- .|++..|..-+....+.+. .+....+|+..... |..| +...|...+..+. ..++++.+..
T Consensus 31 e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~ 110 (493)
T 2uy1_A 31 RSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRN 110 (493)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 55777776544 3788899999988777763 45677888887764 5444 5566777776654 2456788999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHH-------------cCChHHHHHHHccCCC----CCeehHHHHHHHHHhCC--C
Q 038673 74 IHAQTILLGGFTSDLYVGNTMIGMYVK-------------CGFLGCSRKVFDEMPE----RDVVSWTELIVAYANNG--D 134 (548)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g--~ 134 (548)
+|+.+++.. ...-...|......-.. .+.+..|+.+++.+.. .+...|...+.--...+ -
T Consensus 111 iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~ 189 (493)
T 2uy1_A 111 GYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKL 189 (493)
T ss_dssp HHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccC
Confidence 999999843 22222233333221111 1122333444333321 13335655555433221 1
Q ss_pred -----hHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHH
Q 038673 135 -----MESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANW 206 (548)
Q Consensus 135 -----~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 206 (548)
.+.+..+|++.. ..+...|-..+.-+.+.|+.++|..+|++.... |+...+.. .++.....++.
T Consensus 190 ~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~-- 261 (493)
T 2uy1_A 190 GGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV-- 261 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH--
T ss_pred cchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH--
Confidence 234555666654 335778998999999999999999999999887 54443322 22222222222
Q ss_pred HHHHHHHcC---------C-CCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC--hhhhHHHHHHHH-hcCCHHHHH
Q 038673 207 VCEIAEGSG---------F-GPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN--VFSYSSMILGFA-MHGRAHAAI 273 (548)
Q Consensus 207 ~~~~~~~~~---------~-~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~-~~g~~~~A~ 273 (548)
++.+.+.- . .+.....+|...+..+.+.+.++.|..+|++...++ ...|-.....-. ..++.+.|.
T Consensus 262 -~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 262 -YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp -HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred -HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHH
Confidence 22222211 0 110133567778888888899999999999884333 223332222112 234699999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 274 QLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGA 353 (548)
Q Consensus 274 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 353 (548)
.+|+...+.- |+. +..+...++...+.|+.+.|..+|+... .....|...+..
T Consensus 341 ~ife~al~~~--~~~-----------------------~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~f 393 (493)
T 2uy1_A 341 NIFSSGLLKH--PDS-----------------------TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEY 393 (493)
T ss_dssp HHHHHHHHHC--TTC-----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCC-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 9999988742 332 2335566787888999999999999984 357889888888
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 038673 354 CQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~ 372 (548)
-..+|+.+.+..++++..+
T Consensus 394 E~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8889999999998888775
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.44 E-value=3.6e-06 Score=68.00 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=97.8
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
+...|..+...+...|++++|+..|++.... .|+ +...+..+...+...|++++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------~~~~~~~~a~~~~~~~~~~~A 65 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPA-----------------------NAVYFCNRAAAYSKLGNYAGA 65 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCC-----------------------CHHHHHHHHHHHHHhhchHHH
Confidence 3456777888888999999999999998873 333 345677888889999999999
Q ss_pred HHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCch
Q 038673 332 LKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWD 395 (548)
Q Consensus 332 ~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 395 (548)
.+.+++.. ..|+ ...|..+...+...|+++.|...++++.+..|+++..+..++.++...|+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99998764 3444 6778888889999999999999999999999999889999999998888753
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.42 E-value=2e-06 Score=72.10 Aligned_cols=97 Identities=8% Similarity=-0.021 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
+...+..+...+.+.|++++|...|++.. ..| +...|..+-.++...|++++|...++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34567778889999999999999999874 445 5788888889999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 038673 389 ASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 389 ~~~g~~~~a~~~~~~m~~~ 407 (548)
...|++++|.+.++...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988653
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.42 E-value=5.4e-06 Score=78.32 Aligned_cols=156 Identities=6% Similarity=-0.123 Sum_probs=112.8
Q ss_pred HHHHHHhCCChHHHHHHHccCCCC-----C----hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC-CC----HhhHHH
Q 038673 125 LIVAYANNGDMESAGGLFNELPLK-----D----KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVE-TD----YVTLVG 190 (548)
Q Consensus 125 li~~~~~~g~~~~A~~~f~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 190 (548)
.+..+...|++++|..++++.... + ...+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677777777777777664321 1 113334666777778999999999988874322 22 225788
Q ss_pred HHHHHHccCChhHHHHHHHHHHH----c-CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----C---C-hhhh
Q 038673 191 VISACAQLGVIKYANWVCEIAEG----S-GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----R---N-VFSY 256 (548)
Q Consensus 191 ll~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~---~-~~~~ 256 (548)
+..++...|++++|...++.+.+ . +..| ....++..+...|.+.|++++|...+++..+ . . ..+|
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEE-FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999999988874 2 2222 3455888899999999999999999887653 1 1 4578
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 038673 257 SSMILGFAMHGR-AHAAIQLFGDMVK 281 (548)
Q Consensus 257 ~~li~~~~~~g~-~~~A~~l~~~m~~ 281 (548)
..+...|...|+ .++|++.|++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888889999995 6999999988765
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.42 E-value=3.1e-06 Score=68.83 Aligned_cols=117 Identities=12% Similarity=0.012 Sum_probs=85.3
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
+...|..+...+...|++++|+..|++..+. .|+ +...+..+...|...|++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~-----------------------~~~~~~~la~~~~~~~~~~~A 69 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPK-----------------------DAKLYSNRAACYTKLLEFQLA 69 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTT-----------------------CHHHHHHHHHHHTTTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----------------------cHHHHHHHHHHHHHhccHHHH
Confidence 3456666777777777777887777777662 332 234566677777778888888
Q ss_pred HHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 038673 332 LKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGM 393 (548)
Q Consensus 332 ~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 393 (548)
.+.+++.. ..| +...|..+..++...|+++.|...++++++..|.+...+..+..++...|+
T Consensus 70 ~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 70 LKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 87777663 334 466777777888888889999999988888888888888888888776653
No 129
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.39 E-value=5.4e-07 Score=79.73 Aligned_cols=172 Identities=9% Similarity=-0.093 Sum_probs=109.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHhhc
Q 038673 226 SALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGV-LTACSHV 301 (548)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~ 301 (548)
+..+......|+++++.+.|+.-.+ .....|..+...+...|++++|+..|++.... .|+...+... +....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~-- 83 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKK-- 83 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHH--
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHH--
Confidence 3444555566777777777765443 23456777888899999999999999999873 3332100000 00000
Q ss_pred CCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 302 GLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 302 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
.......|..+..+|.+.|++++|...+++.. ..| +...|..+..++...|+++.|...+++++++.|+++.
T Consensus 84 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 84 ------KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred ------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 00012567888899999999999999998874 344 4778888889999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCchHHH-HHHHHHHhC
Q 038673 380 NYIILSNIYASAGMWDDVS-RVRRLLKMT 407 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 407 (548)
.+..+..++...|+.+++. ..++.|...
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 158 IRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999998888777776 445555433
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.38 E-value=1.5e-05 Score=75.18 Aligned_cols=162 Identities=9% Similarity=-0.009 Sum_probs=119.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCC---Ch------hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038673 225 GSALIDMYSKCGSIDDAYRIFVGMKQR---NV------FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVL 295 (548)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 295 (548)
+...+..+.+.|++++|...+++..+. +. ..+..+...+...|++++|+..|++........+...
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~----- 152 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY----- 152 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT-----
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH-----
Confidence 334477888899999999999886542 11 1233466667777899999999999988422211110
Q ss_pred HHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCC----hhHHHHHHHHHHhcCCHHHHHHH
Q 038673 296 TACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-----VEPN----GGVWGALLGACQIHRNPEIAQIA 366 (548)
Q Consensus 296 ~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~----~~~~~~ll~~~~~~~~~~~a~~~ 366 (548)
-...+|+.+...|...|++++|...+++.. ...+ ..++..+...|...|++++|...
T Consensus 153 --------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~ 218 (293)
T 3u3w_A 153 --------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp --------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 012358889999999999999999888763 1112 34677788899999999999999
Q ss_pred HHHHhhcCCCC------chhHHHHHHHHHHcCC-chHHHHHHHHHH
Q 038673 367 ANHLFELEPDK------IGNYIILSNIYASAGM-WDDVSRVRRLLK 405 (548)
Q Consensus 367 ~~~~~~~~p~~------~~~~~~l~~~~~~~g~-~~~a~~~~~~m~ 405 (548)
+++++++.+.. ...|..++.+|.+.|+ +++|.+.+++..
T Consensus 219 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99998854332 5688999999999995 599999888775
No 131
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.37 E-value=1.6e-06 Score=88.07 Aligned_cols=121 Identities=8% Similarity=0.037 Sum_probs=98.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 038673 258 SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEK 337 (548)
Q Consensus 258 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (548)
.+...+...|++++|++.|++..+. .|+ +...|..+..+|.+.|++++|++.+++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~--~p~-----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 65 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL--NPS-----------------------NAIYYGNRSLAYLRTECYGYALGDATR 65 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCc-----------------------cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3344566789999999999999883 444 345688899999999999999999988
Q ss_pred CC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH--HHHcCCchHHHHHHHH
Q 038673 338 MP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI--YASAGMWDDVSRVRRL 403 (548)
Q Consensus 338 m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 403 (548)
.. ..|+ ...|..+..++...|++++|.+.+++++++.|++...+..+..+ +.+.|++++|.+.+++
T Consensus 66 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 74 5565 77888888999999999999999999999999999899888888 8889999999998874
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.37 E-value=2.2e-06 Score=75.67 Aligned_cols=151 Identities=13% Similarity=-0.015 Sum_probs=97.8
Q ss_pred hCCChHHHHH---HHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHH----CCCCC-CHhhHHHHHHHHHccCChh
Q 038673 131 NNGDMESAGG---LFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQY----AGVET-DYVTLVGVISACAQLGVIK 202 (548)
Q Consensus 131 ~~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~ 202 (548)
..|++++|.+ ++..-+.....++..+...|...|++++|+..+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 55443333556777777778888888888887777654 12222 2345666667777888888
Q ss_pred HHHHHHHHHHHc----CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCh----hhhHHHHHHHHhcCCH
Q 038673 203 YANWVCEIAEGS----GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RNV----FSYSSMILGFAMHGRA 269 (548)
Q Consensus 203 ~a~~~~~~~~~~----~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~ 269 (548)
+|...+....+. +..|.....++..+...|...|++++|...+++..+ .+. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888887776553 211101345677778888888888888888776542 222 2356677778888888
Q ss_pred HHHHHHHHHHHH
Q 038673 270 HAAIQLFGDMVK 281 (548)
Q Consensus 270 ~~A~~l~~~m~~ 281 (548)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887765
No 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.37 E-value=3.3e-06 Score=70.13 Aligned_cols=96 Identities=10% Similarity=-0.075 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3456667788999999999999999874 445 57788888899999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 038673 390 SAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 390 ~~g~~~~a~~~~~~m~~~ 407 (548)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988653
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.35 E-value=2.4e-06 Score=82.57 Aligned_cols=143 Identities=9% Similarity=-0.018 Sum_probs=109.4
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCc-CHHHHHHHHHHHHHcCCHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSP-STDHYACMVDLLGRAGCLEE 330 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 330 (548)
+...|..+...|...|++++|+..|++.++. .|+...+..- ......| ....|..+..+|.+.|++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~---------~~~~~~~~~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNE---------EAQKAQALRLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSH---------HHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChH---------HHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3456777888888889999999999888873 3332100000 0000000 13568889999999999999
Q ss_pred HHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH-HHHHHHH
Q 038673 331 ALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVS-RVRRLLK 405 (548)
Q Consensus 331 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~ 405 (548)
|+..+++.. +.| +...|..+..++...|++++|...++++++++|++..++..++.++...|++++|. ..++.|.
T Consensus 215 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 215 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999874 445 47788888899999999999999999999999999999999999999999999984 4566654
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.34 E-value=9.8e-06 Score=68.75 Aligned_cols=128 Identities=9% Similarity=-0.063 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+..+.+.... +..++..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHHHH
Confidence 4567778888888899999999888887653 335677778888888889999999999888887644 778888888
Q ss_pred HHHhcCCCHHHHHHHHhcCCC---CChhhhHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSM--ILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l--i~~~~~~g~~~~A~~l~~~m~~ 281 (548)
..|.+.|++++|...|++..+ .+...+..+ ...+...|++++|+..+.....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 899999999999999887763 344445333 3347778899999998887654
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.33 E-value=1.7e-05 Score=74.88 Aligned_cols=166 Identities=8% Similarity=-0.050 Sum_probs=121.6
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCh------hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNV------FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTF 291 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 291 (548)
....+...+..|...|++++|.+.+....+ ... ..+..+...+...|++++|+..+++..+........
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-- 151 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-- 151 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT--
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch--
Confidence 444556678888899999999888875432 111 223445566778899999999999988642211100
Q ss_pred HHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCC-----hhHHHHHHHHHHhcCCHHH
Q 038673 292 IGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP----VEPN-----GGVWGALLGACQIHRNPEI 362 (548)
Q Consensus 292 ~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~-----~~~~~~ll~~~~~~~~~~~ 362 (548)
.-...+|+.+...|...|++++|...+++.. ..|+ ..++..+...|...|++++
T Consensus 152 -----------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~ 214 (293)
T 2qfc_A 152 -----------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE 214 (293)
T ss_dssp -----------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHH
Confidence 0013468889999999999999999998762 1233 2577788889999999999
Q ss_pred HHHHHHHHhhcCCC------CchhHHHHHHHHHHcCCchHH-HHHHHHHH
Q 038673 363 AQIAANHLFELEPD------KIGNYIILSNIYASAGMWDDV-SRVRRLLK 405 (548)
Q Consensus 363 a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 405 (548)
|...+++.+++.++ ...+|..++.+|.+.|++++| ...+++..
T Consensus 215 Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 215 SLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99999999885332 145788999999999999999 77677654
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.33 E-value=5.2e-06 Score=76.60 Aligned_cols=182 Identities=10% Similarity=-0.080 Sum_probs=97.3
Q ss_pred hCCCchHHHHHHHHHHHCCCCCC-hhhHHHH-------HHHhhccCCcHHHHHHHHHHHHhCCCCCC-------------
Q 038673 29 LQGHLKDSISLYCSMRREGIGPV-SFTLSAL-------FKACTEVLDVSLGQQIHAQTILLGGFTSD------------- 87 (548)
Q Consensus 29 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l-------l~a~~~~~~~~~a~~~~~~~~~~~~~~~~------------- 87 (548)
+.+++..|.+.|.+..+. .|+ ...|..+ ...+...++..++...+...+. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~---l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ---ISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT---CCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc---CChhhhhhhhccCCccc
Confidence 567888888888888774 443 3455554 2222222222222222222222 2221
Q ss_pred ---------hhHHHHHHHHHHHcCChHHHHHHHccCCC--CCeehHHHHHHHHHhCCChHHHHHHHccCCCC-C----hh
Q 038673 88 ---------LYVGNTMIGMYVKCGFLGCSRKVFDEMPE--RDVVSWTELIVAYANNGDMESAGGLFNELPLK-D----KV 151 (548)
Q Consensus 88 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~----~~ 151 (548)
..++-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... + ..
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12234455666667777777777777654 32224444455666666677776666654432 1 22
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETD--YVTLVGVISACAQLGVIKYANWVCEIAEGSG 215 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 215 (548)
.+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455566666666666666666666653322133 1233444455566666666666666666544
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=4.6e-06 Score=67.45 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|...++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4567778889999999999999998873 445 47888888899999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 038673 390 SAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 390 ~~g~~~~a~~~~~~m~~~ 407 (548)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988753
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.31 E-value=5.9e-06 Score=76.23 Aligned_cols=183 Identities=10% Similarity=-0.048 Sum_probs=121.7
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCChhHHHHH-------HHHHHHcCChHHHHHHHccCCC--C-------C-e-------
Q 038673 64 EVLDVSLGQQIHAQTILLGGFTSDLYVGNTM-------IGMYVKCGFLGCSRKVFDEMPE--R-------D-V------- 119 (548)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~--~-------~-~------- 119 (548)
..++...|.+.|..+.+.. +.....|+.+ ...+.+.++..++...++.-.+ | + .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999999986 7777888877 4555555555555555554443 1 1 0
Q ss_pred -------ehHHHHHHHHHhCCChHHHHHHHccCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhhH
Q 038673 120 -------VSWTELIVAYANNGDMESAGGLFNELPL--KDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD--YVTL 188 (548)
Q Consensus 120 -------~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~ 188 (548)
..+-.....+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~ 174 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAG 174 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHH
Confidence 0123456677888889999888888863 322255666667888888888888887554321 111 2356
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 189 VGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 189 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
..+..++...|++++|...|++.......|.........+..++.+.|+.++|..+|+++.
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6677778888888888888888775433241244456666666777777777777776654
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.29 E-value=1.6e-05 Score=70.07 Aligned_cols=153 Identities=9% Similarity=-0.037 Sum_probs=99.1
Q ss_pred cCCCHHHHHH---HHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHhhcCCccCCCC
Q 038673 234 KCGSIDDAYR---IFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKP-NGVTFIGVLTACSHVGLKCYGVS 309 (548)
Q Consensus 234 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~~~~ 309 (548)
..|++++|.+ .+..-+......+..+...|...|++++|+..+++........ +..
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------- 63 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT-------------------- 63 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH--------------------
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcH--------------------
Confidence 4567777777 5544333345566777777777777777777777766521100 100
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CC-
Q 038673 310 PSTDHYACMVDLLGRAGCLEEALKMVEKMP----VEP-N----GGVWGALLGACQIHRNPEIAQIAANHLFELEP--DK- 377 (548)
Q Consensus 310 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p--~~- 377 (548)
.....+..+...|...|++++|.+.+++.. ..+ + ...+..+...+...|++++|...+++.++..+ .+
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 143 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ 143 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch
Confidence 123456677778888888888888777652 122 2 33456666778888999999999888876322 12
Q ss_pred ---chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 378 ---IGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 378 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
...+..++.+|...|++++|.+.+++..+
T Consensus 144 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 144 VAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 22457888999999999999998887754
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.28 E-value=3.5e-06 Score=72.85 Aligned_cols=120 Identities=11% Similarity=0.161 Sum_probs=97.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC
Q 038673 264 AMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEP 342 (548)
Q Consensus 264 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p 342 (548)
...|++++|+..+++..+. .|+ +...|..+...|...|++++|...|++.. ..|
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~-----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 75 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQ-----------------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG 75 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCS-----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHh--CCC-----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4568888999999988773 333 44568888999999999999999999874 334
Q ss_pred -ChhHHHHHHHH-HHhcCCH--HHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 343 -NGGVWGALLGA-CQIHRNP--EIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 343 -~~~~~~~ll~~-~~~~~~~--~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
+...|..+..+ +...|++ +.|...++++++.+|+++..+..++.+|...|++++|...+++..+..
T Consensus 76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 46677777777 7788998 999999999999999999999999999999999999999999987644
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.28 E-value=2.9e-06 Score=71.08 Aligned_cols=105 Identities=9% Similarity=-0.082 Sum_probs=80.7
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
+...+..+...+...|++++|+..|++... ..|+ +...|..+..+|...|++++|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~-----------------------~~~~~~~lg~~~~~~g~~~~A 74 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHY-----------------------DSRFFLGLGACRQAMGQYDLA 74 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT-----------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcc-----------------------cHHHHHHHHHHHHHHhhHHHH
Confidence 344566677778888888888888888876 3343 344577777888888888888
Q ss_pred HHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 332 LKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 332 ~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
.+.|++.. ..|+ ...|..+..++...|++++|...+++++++.|+++...
T Consensus 75 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 88888763 4454 67777788889999999999999999999988877543
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.27 E-value=6.6e-05 Score=70.76 Aligned_cols=161 Identities=8% Similarity=-0.072 Sum_probs=98.0
Q ss_pred hhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHHcCChHHHHHHHccCCC-----CC----
Q 038673 52 SFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSD----LYVGNTMIGMYVKCGFLGCSRKVFDEMPE-----RD---- 118 (548)
Q Consensus 52 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~---- 118 (548)
...+...+..+...|++++|...+...++.....++ ...+..+...|...|++++|...|++..+ .+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345555556666666677776666666654311111 12234455556666677777776655432 11
Q ss_pred eehHHHHHHHHHhCCChHHHHHHHccCC-------CC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC----CCCC
Q 038673 119 VVSWTELIVAYANNGDMESAGGLFNELP-------LK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAG----VETD 184 (548)
Q Consensus 119 ~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~ 184 (548)
..+|+.+...|...|++++|...|++.. .. ...+|+.+...|...|++++|+..+++..... ....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 2356666777777777777777766543 11 12578888888999999999999988765421 1111
Q ss_pred -HhhHHHHHHHHHccCChhHH-HHHHHHHH
Q 038673 185 -YVTLVGVISACAQLGVIKYA-NWVCEIAE 212 (548)
Q Consensus 185 -~~t~~~ll~~~~~~g~~~~a-~~~~~~~~ 212 (548)
..+|..+..++...|+.++| ...++.+.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45566777777778888777 66566543
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=4.8e-06 Score=65.20 Aligned_cols=98 Identities=16% Similarity=0.078 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CchhHHHHHHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPD--KIGNYIILSNI 387 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 387 (548)
...+..+...+.+.|++++|...+++.. ..| +...|..+...+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4557778888999999999999998873 334 5778888889999999999999999999999999 99999999999
Q ss_pred HHHc-CCchHHHHHHHHHHhCCC
Q 038673 388 YASA-GMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 388 ~~~~-g~~~~a~~~~~~m~~~g~ 409 (548)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999876543
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.26 E-value=9.6e-06 Score=66.45 Aligned_cols=98 Identities=13% Similarity=0.032 Sum_probs=88.0
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 038673 310 PSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNI 387 (548)
Q Consensus 310 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 387 (548)
.+...+..+...+...|++++|...|++.. ..|+ ...|..+..++...|+++.|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 356788899999999999999999998863 3454 77888888999999999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 038673 388 YASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 388 ~~~~g~~~~a~~~~~~m~~~ 407 (548)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.25 E-value=2.3e-06 Score=80.44 Aligned_cols=90 Identities=11% Similarity=-0.059 Sum_probs=47.5
Q ss_pred HHHHHHHhCCChHHHHHHHccCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 038673 124 ELIVAYANNGDMESAGGLFNELP---LKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGV 200 (548)
Q Consensus 124 ~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 200 (548)
.+...+.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++...|+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 87 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMES 87 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 33334444444444444444332 2245556666666666666666666666655432 2234455555566666666
Q ss_pred hhHHHHHHHHHHHc
Q 038673 201 IKYANWVCEIAEGS 214 (548)
Q Consensus 201 ~~~a~~~~~~~~~~ 214 (548)
+++|...+..+.+.
T Consensus 88 ~~~A~~~~~~al~l 101 (281)
T 2c2l_A 88 YDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666655543
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.25 E-value=1.5e-05 Score=63.65 Aligned_cols=93 Identities=20% Similarity=0.179 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
.|..+...+...|++++|..+|+++.... +.+..++..+...+...|++++|...++.+.+.... +..++..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~ 86 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHH
Confidence 33344444444444444444444443321 122333334444444444444444444444433222 33344444444
Q ss_pred HhcCCCHHHHHHHHhcC
Q 038673 232 YSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~ 248 (548)
|.+.|++++|...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 44444444444444433
No 148
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.25 E-value=9e-05 Score=70.69 Aligned_cols=225 Identities=12% Similarity=0.059 Sum_probs=151.2
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG-VIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
++.+-......+..++|+++++++...+ +-+...++.--..+...+ .++++.++++.++...++ +..+|+.-.-.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK---ny~aW~hR~wl 132 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK---SYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC---CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC---cHHHHHHHHHH
Confidence 3333334445566678999999988753 224444666556666677 589999999999988766 88888887777
Q ss_pred HhcC-C-CHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038673 232 YSKC-G-SIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAH--------AAIQLFGDMVKTETKPNGVTFIGVLTAC 298 (548)
Q Consensus 232 y~~~-g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 298 (548)
+.+. + +++++.++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++++. .|.
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~----------- 199 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGR----------- 199 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTT-----------
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCC-----------
Confidence 7766 6 788999999988864 5556665444444444444 899999999884 333
Q ss_pred hhcCCccCCCCcCHHHHHHHHHHHHHcCC-------HHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCH---------
Q 038673 299 SHVGLKCYGVSPSTDHYACMVDLLGRAGC-------LEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNP--------- 360 (548)
Q Consensus 299 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~--------- 360 (548)
|...|+....++.+.++ ++++++.+++.- ..| |...|+-+-..+.+.|..
T Consensus 200 ------------N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~ 267 (349)
T 3q7a_A 200 ------------NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAIL 267 (349)
T ss_dssp ------------CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHG
T ss_pred ------------CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccc
Confidence 33456666666666655 678888887663 445 477887777766666553
Q ss_pred -----------HHHHHHHHHHhhcC------CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 361 -----------EIAQIAANHLFELE------PDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 361 -----------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.........+.... +.++.+...|+.+|...|+.++|.++++.+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 268 PYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222322332222 45666788999999999999999999999863
No 149
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=3.2e-06 Score=68.08 Aligned_cols=94 Identities=19% Similarity=0.085 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASA 391 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 391 (548)
.+..+...+.+.|++++|...|++.. ..| +...|..+-.++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35567788899999999999999874 456 4778888889999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhC
Q 038673 392 GMWDDVSRVRRLLKMT 407 (548)
Q Consensus 392 g~~~~a~~~~~~m~~~ 407 (548)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988653
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.23 E-value=7.6e-06 Score=69.71 Aligned_cols=97 Identities=10% Similarity=-0.015 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
+...+..+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|...++++++++|+++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 55678888999999999999999999874 445 5778888889999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 038673 389 ASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 389 ~~~g~~~~a~~~~~~m~~~ 407 (548)
...|++++|.+.+++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.23 E-value=1.2e-05 Score=63.59 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
....+..+...+...|++++|.+.+++.. ..| +...|..+...+...|+++.|...++++.+..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34567888899999999999999999874 344 5778888889999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 038673 389 ASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 389 ~~~g~~~~a~~~~~~m~~~ 407 (548)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988754
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.22 E-value=7.5e-06 Score=70.69 Aligned_cols=116 Identities=9% Similarity=0.009 Sum_probs=65.5
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH-HhcCCCH--
Q 038673 162 QNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM-YSKCGSI-- 238 (548)
Q Consensus 162 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~-y~~~g~~-- 238 (548)
..|++++|+..|++..... +.+...+..+...+...|++++|...++.+.+.... +...+..+..+ |...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhcCCcch
Confidence 3455566666665555432 234455555566666666666666666666555433 55555566666 5566665
Q ss_pred HHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 239 DDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 239 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
++|...|+++.+ .+...|..+...|...|++++|+..|++..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 666666665542 2345566666666666777777777776665
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.20 E-value=1.9e-05 Score=63.94 Aligned_cols=113 Identities=7% Similarity=-0.096 Sum_probs=71.2
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.... +..++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---FIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---chHHHHHH
Confidence 45567777777777777777777777766542 235556666666677777777777777777665433 56666667
Q ss_pred HHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHh
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAM 265 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 265 (548)
...|.+.|++++|.+.|++..+ .+...+..+...+..
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 7777777777777777666543 223344444444443
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.18 E-value=3.1e-05 Score=60.99 Aligned_cols=111 Identities=16% Similarity=0.086 Sum_probs=90.4
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
+..|..+...+...|++++|+..|++.... .|+ +...+..+...+.+.|++++|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------~~~~~~~~a~~~~~~~~~~~A~ 58 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPH-----------------------NHVLYSNRSAAYAKKGDYQKAY 58 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCC-----------------------cHHHHHHHHHHHHhhccHHHHH
Confidence 456777888889999999999999998873 333 3456778888899999999999
Q ss_pred HHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 333 KMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 333 ~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
..+++.. ..| +...|..+..++...|+++.|...++++.+..|+++..+..+..+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 59 EDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9998773 344 4777888889999999999999999999999999887777666543
No 155
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.18 E-value=0.00029 Score=67.18 Aligned_cols=227 Identities=8% Similarity=-0.054 Sum_probs=136.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccC-CcHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRREGIGPV-SFTLSALFKACTEVL-DVSLGQQIHAQTILLGGFTSDLYVGNTMIGM 97 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 97 (548)
|+.+-....+.+..++|+++++.++.. .|+ ..+|+.--..+...+ +++++..+++.+++.. +.+..+|+.-..+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wl 132 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 343333344455566788888877763 453 344665555555566 4777777777777764 6667777776666
Q ss_pred HHHc-C-ChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChh--------
Q 038673 98 YVKC-G-FLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPR-------- 167 (548)
Q Consensus 98 ~~~~-g-~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~-------- 167 (548)
+.+. + ++++++++++.+.+.|. +|..+|+--.-.+.+.|.++
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dp----------------------------kNy~AW~~R~wvl~~l~~~~~~~~~~~~ 184 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDP----------------------------KNYHTWAYLHWLYSHFSTLGRISEAQWG 184 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCT----------------------------TCHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCC----------------------------CCHHHHHHHHHHHHHhccccccchhhHH
Confidence 6655 5 66666666666554322 23333333333333333333
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC-------hhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCH--
Q 038673 168 EAIEYFERMQYAGVETDYVTLVGVISACAQLGV-------IKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSI-- 238 (548)
Q Consensus 168 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~-- 238 (548)
++++.++++.+.. +-|...++.....+.+.+. ++++.+....++...+. +...|+-+-..+.+.|..
T Consensus 185 eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~---n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 185 SELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH---NVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCCcc
Confidence 6777777776654 3355566665555555554 56777777777776654 777887776666665542
Q ss_pred ------------------HHHHHHHhcCCC---------CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038673 239 ------------------DDAYRIFVGMKQ---------RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKT 282 (548)
Q Consensus 239 ------------------~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 282 (548)
........++.. +....+..++..|...|+.++|.++++.+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 334444444432 34566777888899999999999999998653
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.18 E-value=8.8e-06 Score=67.46 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=84.9
Q ss_pred HHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHH
Q 038673 244 IFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVD 320 (548)
Q Consensus 244 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~ 320 (548)
.|+++... +...+..+...+...|++++|+..|++... ..|+ +...|..+..
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~-----------------------~~~~~~~lg~ 60 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHY-----------------------DARYFLGLGA 60 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT-----------------------CHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCc-----------------------cHHHHHHHHH
Confidence 44444443 234555666778888999999999988877 3444 3455777888
Q ss_pred HHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHH
Q 038673 321 LLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIIL 384 (548)
Q Consensus 321 ~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 384 (548)
+|.+.|++++|...|++.. ..|+ +..|..+..++...|+++.|...+++++++.|+++......
T Consensus 61 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 61 CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 8888999999998888763 3454 66777788889999999999999999999999887554443
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.7e-05 Score=64.08 Aligned_cols=110 Identities=12% Similarity=0.019 Sum_probs=80.8
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
..|..+...+...|++++|+..|++.++. .|+ +...|..+..+|.+.|++++|+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~-----------------------~~~~~~~~a~~~~~~~~~~~A~~ 59 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APE-----------------------DARGYSNRAAALAKLMSFPEAIA 59 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC-----------------------ChHHHHHHHHHHHHhcCHHHHHH
Confidence 34666667777888888888888887763 333 33557777788888888888888
Q ss_pred HHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCchhHHHHHHHH
Q 038673 334 MVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELE------PDKIGNYIILSNIY 388 (548)
Q Consensus 334 ~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 388 (548)
.+++.. ..|+ ...|..+..++...|++++|...++++++++ |.+......+..+.
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 887763 3454 6677777788888999999999999998888 77766666555443
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.16 E-value=2.2e-05 Score=63.23 Aligned_cols=115 Identities=11% Similarity=-0.029 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+..+.+.... +...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA---YSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc---CHHHHHHHH
Confidence 3455666666666677777777766665542 234555566666666666677776666666665433 555666666
Q ss_pred HHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCC
Q 038673 230 DMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGR 268 (548)
Q Consensus 230 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 268 (548)
..|.+.|++++|...|++..+ .+...+..+...+...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 666666666666666665542 234445555555544443
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.15 E-value=2.1e-05 Score=66.96 Aligned_cols=109 Identities=17% Similarity=0.051 Sum_probs=86.4
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
+...|..+...+...|++++|+..|++.++. .|+ +...|..+..+|.+.|++++|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~-----------------------~~~~~~~l~~~~~~~g~~~~A 64 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APA-----------------------NPIYLSNRAAAYSASGQHEKA 64 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCc-----------------------CHHHHHHHHHHHHHccCHHHH
Confidence 3456777777888888888888888888773 343 345677888888889999999
Q ss_pred HHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 332 LKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 332 ~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
+..|++.. +.|+ ...|..+..++...|+++.|...++++++++|++...+....
T Consensus 65 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 65 AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 98888774 4454 778888889999999999999999999999999887554443
No 160
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.14 E-value=1.7e-05 Score=66.49 Aligned_cols=91 Identities=10% Similarity=-0.030 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
.|..+...+.+.|++++|+..|++..... +-+...+..+..++...|++++|...|+.+.+..+. +...+..+..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~---~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN---DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC---CcHHHHHHHHH
Confidence 44444444444444444444444444331 123333344444444444444444444444443322 33333344444
Q ss_pred HhcCCCHHHHHHHHh
Q 038673 232 YSKCGSIDDAYRIFV 246 (548)
Q Consensus 232 y~~~g~~~~A~~~~~ 246 (548)
|.+.|++++|...|+
T Consensus 114 ~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 114 QLRLKAPLKAKECFE 128 (151)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 444444444443333
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=2.1e-05 Score=65.19 Aligned_cols=98 Identities=11% Similarity=0.001 Sum_probs=88.0
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHH
Q 038673 310 PSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIIL 384 (548)
Q Consensus 310 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 384 (548)
.+...+..+...+...|++++|.+.|++.. ..|+ ...|..+..++...|++++|...++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 356788889999999999999999999873 5677 57777888899999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 038673 385 SNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 385 ~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+.+|...|++++|.+.+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999988753
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.10 E-value=1.2e-05 Score=65.32 Aligned_cols=94 Identities=6% Similarity=-0.095 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch-------hHHH
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG-------NYII 383 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~ 383 (548)
..+..+...+.+.|++++|++.|++.- +.|+ ...|..+-.++...|++++|+..+++++++.|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 457778899999999999999998874 4565 778888889999999999999999999998887643 6777
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 038673 384 LSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 384 l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999988764
No 163
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.10 E-value=2.8e-05 Score=75.00 Aligned_cols=130 Identities=14% Similarity=0.028 Sum_probs=104.9
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--------------HhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD--------------YVTLVGVISACAQLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 214 (548)
+...|..+...|.+.|++++|+..|++.....-... ...+..+..++.+.|++++|...++.+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455788888888999999999999988877531111 467888888899999999999999999887
Q ss_pred CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 038673 215 GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAA-IQLFGDMVK 281 (548)
Q Consensus 215 ~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A-~~l~~~m~~ 281 (548)
.+. +..++..+..+|...|++++|...|++..+ .+...+..+...+...|+.++| ..+|+.|..
T Consensus 226 ~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 644 888899999999999999999999988763 4567788888888889998888 457777654
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=6.7e-05 Score=62.02 Aligned_cols=116 Identities=11% Similarity=-0.070 Sum_probs=90.3
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHH
Q 038673 251 RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEE 330 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 330 (548)
.+...|..+...+...|++++|+..|++..+ ..|+... ....+..+...|...|++++
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~--------------------~~~~~~~~a~~~~~~~~~~~ 83 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD--------------------QAVLHRNRAACHLKLEDYDK 83 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHH--------------------HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchH--------------------HHHHHHHHHHHHHHHccHHH
Confidence 3556778888888889999999999998887 3454311 03457778888889999999
Q ss_pred HHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 331 ALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 331 A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
|...+++.. ..| +...|..+..++...|+++.|...++++++..|++...+..+..+.
T Consensus 84 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 84 AETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999988763 344 4677888888999999999999999999999999887766665544
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.07 E-value=0.00022 Score=67.71 Aligned_cols=97 Identities=18% Similarity=0.182 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHH-----------cCCHHHHHHHH
Q 038673 267 GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGR-----------AGCLEEALKMV 335 (548)
Q Consensus 267 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~-----------~g~~~~A~~~~ 335 (548)
+.++++++.+.+.+. ..|+..+ .|+-+-..+.+ .+.++++++.+
T Consensus 207 ~~~~eEle~~~~ai~--~~P~d~S-----------------------aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 207 NVLLKELELVQNAFF--TDPNDQS-----------------------AWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHH-----------------------HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCCCCHH-----------------------HHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 457889999999887 4565443 23322222222 24577888888
Q ss_pred HhCC-CCCChhHHHHHHH-----HHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 336 EKMP-VEPNGGVWGALLG-----ACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 336 ~~m~-~~p~~~~~~~ll~-----~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
+++- ..||. .|..+-. +....+..++....+.++.+++|...+-|.-+...+.
T Consensus 262 ~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 262 KELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp HHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 7774 56774 4543222 2224677888999999999999998877777665443
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.06 E-value=0.00063 Score=64.50 Aligned_cols=216 Identities=13% Similarity=0.042 Sum_probs=145.2
Q ss_pred HHCCChh-HHHHHHHHHHHCCCCCCHhh-HHHHHHHHHccCC----------hhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 161 VQNAKPR-EAIEYFERMQYAGVETDYVT-LVGVISACAQLGV----------IKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 161 ~~~g~~~-~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
.+.|.++ +|+.++..+... .|+..| ++.--..+...+. ++++..+++.+....+. +..+|+.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK---ny~aW~hR 114 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGTWHHR 114 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 4455554 788888888764 454433 3332222222222 57888888888887765 88888887
Q ss_pred HHHHhcCC--CHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcC
Q 038673 229 IDMYSKCG--SIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGR-AHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVG 302 (548)
Q Consensus 229 i~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 302 (548)
.-.+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. ++++++.+.++++. .|+
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~--------------- 177 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFS--------------- 177 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSC---------------
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCC---------------
Confidence 77777777 48999999988874 566778777777777787 68999999999984 333
Q ss_pred CccCCCCcCHHHHHHHHHHHHHc--------------CCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhc---------
Q 038673 303 LKCYGVSPSTDHYACMVDLLGRA--------------GCLEEALKMVEKMP-VEPN-GGVWGALLGACQIH--------- 357 (548)
Q Consensus 303 ~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~--------- 357 (548)
|...|+....++.+. +.++++++.+.+.- ..|+ ...|+-+-..+...
T Consensus 178 --------N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~ 249 (331)
T 3dss_A 178 --------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVE 249 (331)
T ss_dssp --------CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHH
T ss_pred --------CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchH
Confidence 223344433333332 45788888887763 4454 77777655555444
Q ss_pred --CCHHHHHHHHHHHhhcCCCCchhHHHHHHHH---HHcCCchHHHHHHHHHHh
Q 038673 358 --RNPEIAQIAANHLFELEPDKIGNYIILSNIY---ASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 358 --~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 406 (548)
+.++.+.+.+++++++.|++.-.+..++... ...|..+++...+.++.+
T Consensus 250 ~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 250 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578999999999999999855444443322 235677788888888865
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.04 E-value=1.7e-05 Score=66.05 Aligned_cols=94 Identities=12% Similarity=-0.070 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC--------h-----hHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-VEPN--------G-----GVWGALLGACQIHRNPEIAQIAANHLFEL----- 373 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~--------~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 373 (548)
..+......+.+.|++++|++.|++.- +.|+ . ..|..+-.++...|++++|...+++.+++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345566778889999999999998773 3344 2 28888889999999999999999999999
Q ss_pred --CCCCchhH----HHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 374 --EPDKIGNY----IILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 374 --~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
+|++...| ...+.++...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999 9999999999999999999998865
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.03 E-value=5e-05 Score=76.97 Aligned_cols=116 Identities=15% Similarity=0.041 Sum_probs=77.5
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCH
Q 038673 193 SACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRA 269 (548)
Q Consensus 193 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 269 (548)
..+.+.|++++|.+.++++++.... +..++..+..+|.+.|++++|.+.|++..+ .+..+|..+..+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456677888888888888776543 677788888888888888888888877653 3456777777778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 038673 270 HAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDL--LGRAGCLEEALKMVE 336 (548)
Q Consensus 270 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 336 (548)
++|++.|++..+. .|+. ...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~--~p~~-----------------------~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV--KPHD-----------------------KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH--STTC-----------------------TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh--CCCC-----------------------HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888877763 3332 1234444444 667777777777776
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.01 E-value=6.2e-05 Score=58.62 Aligned_cols=102 Identities=20% Similarity=0.103 Sum_probs=80.1
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 038673 252 NVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEA 331 (548)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 331 (548)
+...|..+...+...|++++|+..|++..+. .|+ +...+..+...+...|++++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~-----------------------~~~~~~~~a~~~~~~~~~~~A 59 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPE-----------------------ESKYWLMKGKALYNLERYEEA 59 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCC-----------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcC-----------------------CHHHHHHHHHHHHHccCHHHH
Confidence 4566777788888888888998888888773 233 334577778888889999999
Q ss_pred HHHHHhCC-CCC---ChhHHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCCc
Q 038673 332 LKMVEKMP-VEP---NGGVWGALLGACQIH-RNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 332 ~~~~~~m~-~~p---~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 378 (548)
.+.+++.. ..| +...|..+...+... |++++|.+.++++.+..|+++
T Consensus 60 ~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 60 VDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 98888763 344 467788888889999 999999999999999888764
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.01 E-value=1.1e-05 Score=71.23 Aligned_cols=129 Identities=12% Similarity=-0.037 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCC--------------HhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETD--------------YVTLVGVISACAQLGVIKYANWVCEIAEGS 214 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 214 (548)
...+..+...+...|++++|+..|++.....- .|+ ...+..+..++...|++++|...++.+++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566666677777777777777777765321 110 145666666777777777777777777776
Q ss_pred CCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 038673 215 GFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAI-QLFGDMVK 281 (548)
Q Consensus 215 ~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~ 281 (548)
... +..++..+..+|...|++++|...|++..+ .+...+..+...+...++..++. ..|..|..
T Consensus 118 ~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 DKN---NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp STT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred Ccc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 533 667777777777777777777777776642 34556666666666666666555 44555544
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.00 E-value=3.5e-05 Score=62.19 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=79.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhCC-CCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---chhHHHHHH
Q 038673 315 YACMVDLLGRAGCLEEALKMVEKMP-VEPNG----GVWGALLGACQIHRNPEIAQIAANHLFELEPDK---IGNYIILSN 386 (548)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 386 (548)
+..+...+.+.|++++|.+.|++.. ..|+. ..+..+..++...|+++.|...++++++..|++ +..+..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3446677889999999999999874 34543 477777788999999999999999999999998 777999999
Q ss_pred HHHHcCCchHHHHHHHHHHhC
Q 038673 387 IYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 387 ~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+|...|++++|...++.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.98 E-value=4.4e-05 Score=61.81 Aligned_cols=96 Identities=11% Similarity=0.004 Sum_probs=52.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-C-------hhhhHHH
Q 038673 190 GVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--R-N-------VFSYSSM 259 (548)
Q Consensus 190 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~-------~~~~~~l 259 (548)
.+...+.+.|++++|...|+.+++..+. +..+++.+..+|.+.|++++|.+.|++..+ | + ..+|..+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444444455555555555555444322 455555555555555555555555554432 1 0 1245556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 038673 260 ILGFAMHGRAHAAIQLFGDMVKTETKPNGVT 290 (548)
Q Consensus 260 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 290 (548)
...+...|++++|++.|++.+. ..||..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~--~~~~~~~ 118 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS--EFRDPEL 118 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCcCHHH
Confidence 6677778888888888887776 3455443
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.96 E-value=3.5e-05 Score=62.08 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------chhHH
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDK-------IGNYI 382 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 382 (548)
...+..+...+...|++++|...|++.. ..| +...+..+...+...|+++.|...++++.+..|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3567788899999999999999998873 334 57778888889999999999999999999987766 77899
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 383 ILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.92 E-value=3.7e-05 Score=65.19 Aligned_cols=96 Identities=9% Similarity=-0.023 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCC-C------------------CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMP-V------------------EPN-GGVWGALLGACQIHRNPEIAQIAANHLF 371 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~------------------~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 371 (548)
...+......+.+.|++++|...|++.. . .|. ...|..+..++...|+++.|...+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3457778889999999999999998763 2 222 3567777789999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 038673 372 ELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 372 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 407 (548)
+++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988653
No 175
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.91 E-value=0.00015 Score=59.01 Aligned_cols=96 Identities=14% Similarity=-0.074 Sum_probs=50.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHH
Q 038673 149 DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSAL 228 (548)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 228 (548)
+...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...++.+.+.... +...+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHHHHHH
Confidence 44555555555666666666666665555432 223444555555555555555555555555554422 44455555
Q ss_pred HHHHhcCCCHHHHHHHHhcC
Q 038673 229 IDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~ 248 (548)
...|...|++++|...|++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 55555555555555544443
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.91 E-value=9e-06 Score=64.82 Aligned_cols=84 Identities=10% Similarity=0.028 Sum_probs=70.0
Q ss_pred HcCCHHHHHHHHHhCC-C---CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 038673 324 RAGCLEEALKMVEKMP-V---EPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVS 398 (548)
Q Consensus 324 ~~g~~~~A~~~~~~m~-~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 398 (548)
..|++++|+..|++.. . .|+ ...|..+..++...|++++|...++++++.+|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4688899999998874 3 254 5677788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 038673 399 RVRRLLKMT 407 (548)
Q Consensus 399 ~~~~~m~~~ 407 (548)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988653
No 177
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.90 E-value=3.9e-05 Score=77.44 Aligned_cols=129 Identities=10% Similarity=0.018 Sum_probs=101.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 262 GFAMHGRAHAAIQLFGDMVKTE---TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 262 ~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
.+..+|++++|+.++++.++.. +.|+... ...+++.|..+|...|++++|+.++++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~--------------------~a~~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLY--------------------VLRLLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH--------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4667899999999999887531 2233221 2357889999999999999999998876
Q ss_pred C---------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCch---hHHHHHHHHHHcCCchHHHHH
Q 038673 339 P---------VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFE-----LEPDKIG---NYIILSNIYASAGMWDDVSRV 400 (548)
Q Consensus 339 ~---------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~ 400 (548)
. ..|+ ..+++.|...|...|++++|+.+++++++ +.|++|. ....|..++...|++++|+.+
T Consensus 378 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~ 457 (490)
T 3n71_A 378 VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFM 457 (490)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 3455 56788888999999999999999999887 6777764 445778888899999999999
Q ss_pred HHHHHhCCCc
Q 038673 401 RRLLKMTGLK 410 (548)
Q Consensus 401 ~~~m~~~g~~ 410 (548)
+.+++++-..
T Consensus 458 ~~~~~~~~~~ 467 (490)
T 3n71_A 458 YHKMREAALN 467 (490)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999875543
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.90 E-value=6e-05 Score=76.03 Aligned_cols=139 Identities=12% Similarity=-0.010 Sum_probs=103.6
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh----HHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVT----FIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCL 328 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 328 (548)
...|..+...|.+.|++++|+..|++.++. .|+... ...-+. ......|..+..+|.+.|++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~------------~~~~~~~~nla~~~~~~g~~ 333 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASE------------SFLLAAFLNLAMCYLKLREY 333 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHH------------HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHH------------HHHHHHHHHHHHHHHHhcCH
Confidence 346777888888899999999999988873 333210 000000 00135688889999999999
Q ss_pred HHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH-HHHHHH
Q 038673 329 EEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSR-VRRLLK 405 (548)
Q Consensus 329 ~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 405 (548)
++|+..+++.. +.| +...|..+-.++...|+++.|...|+++++++|++..++..+..++.+.|+++++.+ .++.|.
T Consensus 334 ~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998874 445 477888888999999999999999999999999999999999999999999988874 455554
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00011 Score=73.41 Aligned_cols=93 Identities=6% Similarity=-0.109 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCC----
Q 038673 313 DHYACMVDLLGRAGCLEEALKMVEKMP-------VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELE---PDK---- 377 (548)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---p~~---- 377 (548)
.++..+...|...|++++|..++++.. .+|. ..++..+...|...|++++|...+++.+... ++.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 345566667777777777777666541 1122 3455556667777777777777777666522 211
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 378 IGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 378 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
...+..++..+...|++++|...+.+..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1345555666666777777766665553
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.88 E-value=6.1e-05 Score=60.57 Aligned_cols=110 Identities=7% Similarity=-0.035 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
..|..+...+...|++++|+..|++.... .|+ +...+..+...|...|++++|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~-----------------------~~~~~~~la~~~~~~~~~~~A~~ 59 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPT-----------------------NMTYITNQAAVYFEKGDYNKCRE 59 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCc-----------------------cHHHHHHHHHHHHHhccHHHHHH
Confidence 46777888899999999999999999874 233 34567788899999999999999
Q ss_pred HHHhCC-C----CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 334 MVEKMP-V----EPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 334 ~~~~m~-~----~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
.+++.. . .++ ..+|..+..++...|+++.|...++++.+..| ++.....+..+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 998773 1 222 66777788899999999999999999999988 4556655555443
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.83 E-value=0.00027 Score=56.76 Aligned_cols=108 Identities=15% Similarity=0.056 Sum_probs=83.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038673 256 YSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMV 335 (548)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 335 (548)
+..+...+...|++++|+..|++..+. .|+... ....+..+..++.+.|++++|...|
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~--------------------~~~~~~~lg~~~~~~~~~~~A~~~~ 62 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVY--------------------TPNALYWLGESYYATRNFQLAEAQF 62 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTT--------------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcc--------------------cHHHHHHHHHHHHHhccHHHHHHHH
Confidence 445667788899999999999999874 333210 1145677888999999999999999
Q ss_pred HhCC-CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 336 EKMP-VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 336 ~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
++.. ..|+ ...+..+..++...|+++.|...++++++..|+++.......
T Consensus 63 ~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 63 RDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 8873 3344 455777778899999999999999999999999875544443
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.82 E-value=5.5e-05 Score=63.41 Aligned_cols=132 Identities=11% Similarity=0.022 Sum_probs=82.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGDMVKTETK-PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
++..+...|...|++++|+..+++..+.... ++... ....+..+...+...|++++|.+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------------------~~~~~~~l~~~~~~~g~~~~A~~ 70 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--------------------ERIAYSNLGNAYIFLGEFETASE 70 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--------------------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH--------------------HHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555666666666666666665542100 11000 01345666677777777777777
Q ss_pred HHHhCC----CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CCchhHHHHHHHHHHcCCchHHHH
Q 038673 334 MVEKMP----VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFELEP------DKIGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 334 ~~~~m~----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
.+++.. ..++ ...+..+...+...|+++.|...+++.++..+ .....+..++.+|...|++++|.+
T Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 150 (164)
T 3ro3_A 71 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 150 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH
Confidence 776542 1111 34555566777888888888888888776321 123467788899999999999999
Q ss_pred HHHHHHh
Q 038673 400 VRRLLKM 406 (548)
Q Consensus 400 ~~~~m~~ 406 (548)
.+++..+
T Consensus 151 ~~~~a~~ 157 (164)
T 3ro3_A 151 FAEKHLE 157 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.81 E-value=8.5e-05 Score=59.50 Aligned_cols=92 Identities=13% Similarity=-0.108 Sum_probs=45.2
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++..+. +...+..+...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH
Confidence 3344445555555555555555554432 223444444445555555555555555555554432 444445555555
Q ss_pred hcCCCHHHHHHHHhcC
Q 038673 233 SKCGSIDDAYRIFVGM 248 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~~ 248 (548)
.+.|++++|...|++.
T Consensus 96 ~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 96 TNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 5555555555544443
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00052 Score=68.35 Aligned_cols=195 Identities=9% Similarity=-0.031 Sum_probs=116.5
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCC----------------HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCCh
Q 038673 158 TGYVQNAKPREAIEYFERMQYAGVETD----------------YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINN 221 (548)
Q Consensus 158 ~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 221 (548)
..+.+.|++++|++.|.+..+..-... ...+..+...|...|++++|.+.+..+.+.-... .+
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~~ 90 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF-AK 90 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-CH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cc
Confidence 345566777777777766655321110 1125566677777777777777776655421110 01
Q ss_pred ----HhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CC----hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 038673 222 ----VVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RN----VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 222 ----~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 288 (548)
..+.+.+...+...|+++.|..++..... .+ ..++..+...|...|++++|..++++....-...+.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 12344445555566777777777765531 11 235667777888888888888888877653111111
Q ss_pred hhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-----C-CCC---hhHHHHHHHHHHhcCC
Q 038673 289 VTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-----V-EPN---GGVWGALLGACQIHRN 359 (548)
Q Consensus 289 ~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~-~p~---~~~~~~ll~~~~~~~~ 359 (548)
. ......|..++..|...|++++|..++++.. . .|. ...+..+...+...++
T Consensus 171 ~-------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 231 (434)
T 4b4t_Q 171 K-------------------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD 231 (434)
T ss_dssp S-------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred c-------------------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 1 1123467778888888888888888877652 1 121 2344455566777888
Q ss_pred HHHHHHHHHHHhh
Q 038673 360 PEIAQIAANHLFE 372 (548)
Q Consensus 360 ~~~a~~~~~~~~~ 372 (548)
++.|...+....+
T Consensus 232 y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 232 YKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777765
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.76 E-value=0.0002 Score=69.95 Aligned_cols=135 Identities=10% Similarity=0.005 Sum_probs=98.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCc-CHHHHHHHHHHHHHcCCHHHHHH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSP-STDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
.|..+...+.+.|++++|+..|++.++. .|+.. . . ..........| +...|..+..+|.+.|++++|++
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~---~---~--~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 294 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR---A---A--AEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD 294 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH---H---H--SCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc---c---c--cChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 4666677778888888888888877651 00000 0 0 00000000111 34568889999999999999999
Q ss_pred HHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 038673 334 MVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 334 ~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
.+++.. ..|+ ...|..+..++...|++++|...+++++++.|++...+..+..++...++.+++.+
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 998874 5565 77888888999999999999999999999999999999999999888887777654
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.74 E-value=0.0001 Score=62.36 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=82.9
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCH
Q 038673 255 SYSSMILGFAMHGRAHAAIQLFGDMVKT------ETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCL 328 (548)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 328 (548)
.+......+.+.|++++|+..|.+.+.. .-.|+...+..+ -+.+...|..+..+|.+.|++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~nla~~~~~~~~~ 79 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVEL-------------DRKNIPLYANMSQCYLNIGDL 79 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHH-------------HHTHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHH-------------HHHHHHHHHHHHHHHHhcCcH
Confidence 4555566677777777777777776652 001221111000 011345688889999999999
Q ss_pred HHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc-hhHHHHH
Q 038673 329 EEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI-GNYIILS 385 (548)
Q Consensus 329 ~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~ 385 (548)
++|+..+++.. +.|+ ...|..+..++...|+++.|...++++++++|+++ .....+.
T Consensus 80 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 80 HEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999998874 4555 77888888999999999999999999999999987 4444443
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.73 E-value=9.4e-05 Score=61.91 Aligned_cols=130 Identities=12% Similarity=-0.000 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHccCChhHHHHHHHHHHHcC----CCCCCh
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGV-ETD----YVTLVGVISACAQLGVIKYANWVCEIAEGSG----FGPINN 221 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~ 221 (548)
.++..+...|...|++++|+..+++.....- .++ ..++..+...+...|++++|...++.+.+.. ..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA-VE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH-HH
Confidence 3566777777788888888888877654210 011 1356667777788888888888887765432 111 12
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CC----hhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQ-----RN----VFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
..++..+...|...|++++|...+++..+ .+ ...+..+...|...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55677888888899999998888877652 11 24577778888899999999999988765
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.72 E-value=0.0015 Score=67.43 Aligned_cols=167 Identities=7% Similarity=-0.011 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC----------HHHHHHHHhcCCC---CChhhhHHHHHHHHhcC-
Q 038673 202 KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS----------IDDAYRIFVGMKQ---RNVFSYSSMILGFAMHG- 267 (548)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g- 267 (548)
++|.+.++.+++.++. +..+|+.--..+.+.|+ ++++.+.++.+.+ ++..+|+--.-.+.+.|
T Consensus 46 eeal~~~~~~l~~nP~---~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHCch---hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 4556666666665544 55555555555555554 6667777766653 34556666556666667
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcC-CHHHHHHHHHhCC-CCC-C
Q 038673 268 -RAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAG-CLEEALKMVEKMP-VEP-N 343 (548)
Q Consensus 268 -~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~-~~p-~ 343 (548)
+++++++.++++.+. .|. +..+|+.-..++.+.| .++++++.++++- ..| |
T Consensus 123 ~~~~~el~~~~k~l~~--d~~-----------------------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n 177 (567)
T 1dce_A 123 PNWARELELCARFLEA--DER-----------------------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 177 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTT-----------------------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred ccHHHHHHHHHHHHhh--ccc-----------------------cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC
Confidence 668888888888873 333 3345666666666777 7888888888774 444 3
Q ss_pred hhHHHHHHHHHHhc--------------CCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 038673 344 GGVWGALLGACQIH--------------RNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDD 396 (548)
Q Consensus 344 ~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 396 (548)
...|+.....+... +.++++.+.+++++..+|++..+|..+..++.+.|+.++
T Consensus 178 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 66777766655542 457899999999999999999999999999999888555
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.70 E-value=9.3e-05 Score=58.77 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=73.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCC
Q 038673 265 MHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-VEPN 343 (548)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 343 (548)
..|++++|+..|++.++.+ ++... +...+..+..+|.+.|++++|.+.|++.. ..|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~--~~~p~--------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 59 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG--LQGKD--------------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN 59 (117)
T ss_dssp -----CCCHHHHHHHHSSC--CCHHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHHHHcC--CCCcc--------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4688899999999998843 22111 34568888999999999999999999874 4455
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 344 -GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 344 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
...+..+..++...|++++|...++++++..|+++...
T Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 60 HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 77788888999999999999999999999999887543
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00011 Score=57.21 Aligned_cols=91 Identities=11% Similarity=-0.068 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------chhHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDK------IGNYI 382 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 382 (548)
+...+..+...+.+.|++++|.+.|++.. ..| +...|..+..++...|++++|...+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45678888899999999999999998873 445 47788888899999999999999999999999998 66777
Q ss_pred HHHHHHHHcCCchHHHHHH
Q 038673 383 ILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 383 ~l~~~~~~~g~~~~a~~~~ 401 (548)
.++.++...|++++|.+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 8888888888777766544
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=9.1e-05 Score=71.43 Aligned_cols=140 Identities=10% Similarity=-0.047 Sum_probs=74.4
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH------HHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCC
Q 038673 254 FSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFI------GVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGC 327 (548)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~------~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 327 (548)
..|..+...+...|++++|+..|++.+. ..|+...+. ..+... ....|..+..+|.+.|+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l------------~~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAV------------KNPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHH------------HTHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHH------------HHHHHHHHHHHHHHcCC
Confidence 3455666677777888888888888776 334433210 000000 01257788888999999
Q ss_pred HHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH-HHcCCchHHHHHHHHH
Q 038673 328 LEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY-ASAGMWDDVSRVRRLL 404 (548)
Q Consensus 328 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~~~~~~m 404 (548)
+++|+..+++.. ..| +...|..+..++...|+++.|...++++++++|+++..+..|..+. ...+..+.+.++++.|
T Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998773 445 4778888889999999999999999999999999888888887774 3456677777788777
Q ss_pred HhC
Q 038673 405 KMT 407 (548)
Q Consensus 405 ~~~ 407 (548)
...
T Consensus 326 l~~ 328 (338)
T 2if4_A 326 FKG 328 (338)
T ss_dssp ---
T ss_pred hCC
Confidence 543
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.65 E-value=0.00031 Score=70.81 Aligned_cols=127 Identities=12% Similarity=0.014 Sum_probs=102.1
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC----------------HhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD----------------YVTLVGVISACAQLGVIKYANWVCEIAEG 213 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 213 (548)
...|..+...|.+.|++++|+..|++..+.. |+ ...|..+..++.+.|++++|...++.+++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4578888889999999999999999887642 22 46788888889999999999999999998
Q ss_pred cCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHH-HHHHHHH
Q 038673 214 SGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQ-LFGDMVK 281 (548)
Q Consensus 214 ~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~-l~~~m~~ 281 (548)
.... +...+..+..+|.+.|++++|...|+++.+ .+...|..+...+...++.++|.. +++.|..
T Consensus 346 ~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 LDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7754 888999999999999999999999998764 355678888888888888887764 5666654
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.62 E-value=0.00031 Score=52.32 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP-VEP-NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
+...+..+...+...|++++|...+++.. ..| +...|..+..++...|+++.|...++++++.+|+++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34567778888999999999999998763 334 4677888888899999999999999999999999988888888887
Q ss_pred HHcC
Q 038673 389 ASAG 392 (548)
Q Consensus 389 ~~~g 392 (548)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.61 E-value=0.00023 Score=68.51 Aligned_cols=126 Identities=12% Similarity=-0.012 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh------------------hHHHHHHHHHccCChhHHHHHHHHHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYV------------------TLVGVISACAQLGVIKYANWVCEIAE 212 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------------------t~~~ll~~~~~~g~~~~a~~~~~~~~ 212 (548)
..|..+...+.+.|++++|+..|++.... .|+.. .|..+..++.+.|++++|...++.++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777888888888888877653 34433 67788888999999999999999999
Q ss_pred HcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 038673 213 GSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILG-FAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 213 ~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~ 281 (548)
+.... +..++..+..+|...|++++|...|++..+. +...+..+... ....+..+++..+|+.|..
T Consensus 258 ~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 258 TEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 87644 8899999999999999999999999998752 34455555544 3345677888889988876
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.60 E-value=0.00027 Score=54.27 Aligned_cols=64 Identities=23% Similarity=0.174 Sum_probs=58.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 343 NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 343 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
+...|..+...+...|++++|...++++++.+|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4677888889999999999999999999999999999999999999999999999999988764
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.48 E-value=0.00048 Score=67.17 Aligned_cols=89 Identities=9% Similarity=-0.062 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
...|+.+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...++.+.+.... +..++..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~---~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE---DKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Confidence 3455566666666666666666666655432 223445555555666666666666666666555432 455555555
Q ss_pred HHHhcCCCHHHHH
Q 038673 230 DMYSKCGSIDDAY 242 (548)
Q Consensus 230 ~~y~~~g~~~~A~ 242 (548)
..+.+.++.+++.
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.38 E-value=0.0006 Score=53.66 Aligned_cols=77 Identities=10% Similarity=-0.009 Sum_probs=65.7
Q ss_pred HHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 330 EALKMVEKM-PVEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 330 ~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
+|.+.|++. ...|+ ...|..+...+...|+++.|...++++++.+|+++..+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555544 23454 778888889999999999999999999999999999999999999999999999999998865
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00022 Score=55.50 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=69.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCC------hh
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSD------LY 89 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~------~~ 89 (548)
+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...++..++.. +.+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 34567788888888899999999888888742 2356777788888888888888888888888754 333 44
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCC
Q 038673 90 VGNTMIGMYVKCGFLGCSRKVFDEMP 115 (548)
Q Consensus 90 ~~~~li~~~~~~g~~~~A~~~~~~m~ 115 (548)
.+..+..++...|+.+.|...|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 55666666666666666666555544
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.32 E-value=0.00038 Score=70.22 Aligned_cols=116 Identities=11% Similarity=-0.017 Sum_probs=88.7
Q ss_pred HHHHHcCCHHHHHHHHHhCC---------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCc---hhH
Q 038673 320 DLLGRAGCLEEALKMVEKMP---------VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFE-----LEPDKI---GNY 381 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~ 381 (548)
..+...|++++|+.++++.. ..|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 44667899999999987651 2344 56788888999999999999999999887 455554 578
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 038673 382 IILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQA 454 (548)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 454 (548)
+.|+.+|...|++++|..++++..+--.. .--..||...++...+.....++..
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV-------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999987642111 1124688888888777777666553
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.28 E-value=0.00015 Score=60.17 Aligned_cols=85 Identities=14% Similarity=0.035 Sum_probs=70.1
Q ss_pred HHcCCHHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 038673 323 GRAGCLEEALKMVEKMP-VEPN-GGVWGALLGACQIHRN----------PEIAQIAANHLFELEPDKIGNYIILSNIYAS 390 (548)
Q Consensus 323 ~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 390 (548)
.+.+++++|.+.+++.- ..|+ ...|..+-.++...++ +++|+..++++++++|++..+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 45678889998888763 4554 6777777777776655 4699999999999999999999999999998
Q ss_pred cC-----------CchHHHHHHHHHHhC
Q 038673 391 AG-----------MWDDVSRVRRLLKMT 407 (548)
Q Consensus 391 ~g-----------~~~~a~~~~~~m~~~ 407 (548)
.| ++++|.+.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999998763
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.27 E-value=0.0015 Score=49.25 Aligned_cols=69 Identities=10% Similarity=0.009 Sum_probs=58.8
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 342 PNGGVWGALLGACQIHRN---PEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 342 p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
+|+..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...++++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456777777777654444 699999999999999999999999999999999999999999999876543
No 202
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.24 E-value=0.003 Score=52.51 Aligned_cols=93 Identities=13% Similarity=-0.048 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--------H-----hhHHHHHHHHHccCChhHHHHHHHHHHHc----
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVETD--------Y-----VTLVGVISACAQLGVIKYANWVCEIAEGS---- 214 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---- 214 (548)
.+......+.+.|++++|+..|++..+. .|+ . ..|..+..++.+.|++++|...++..++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4556666777888888888888877653 232 1 14555555556666666666666555553
Q ss_pred -CCCCCChHhHH----HHHHHHHhcCCCHHHHHHHHhc
Q 038673 215 -GFGPINNVVVG----SALIDMYSKCGSIDDAYRIFVG 247 (548)
Q Consensus 215 -~~~p~~~~~~~----~~li~~y~~~g~~~~A~~~~~~ 247 (548)
.+.| .+...| .....++...|++++|...|++
T Consensus 91 ~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 91 GELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp CCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 0012 244444 4444444444444444444443
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.22 E-value=0.00055 Score=67.96 Aligned_cols=117 Identities=14% Similarity=0.062 Sum_probs=90.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC------CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCc---h
Q 038673 318 MVDLLGRAGCLEEALKMVEKMP------VEPN----GGVWGALLGACQIHRNPEIAQIAANHLFE-----LEPDKI---G 379 (548)
Q Consensus 318 li~~~~~~g~~~~A~~~~~~m~------~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~ 379 (548)
.+..+.+.|++++|+.++++.. +.|+ ..+++.|..+|...|++++|+.+++++++ +.|++| .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455668899999999997651 3343 56788888999999999999999999887 445554 5
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 038673 380 NYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQ 453 (548)
Q Consensus 380 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 453 (548)
.+..|+.+|...|++++|..++++..+--.. .--..||...+++..|.+...+|+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 7888999999999999999999887642110 112468988888888887777765
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.09 E-value=0.0078 Score=49.11 Aligned_cols=111 Identities=10% Similarity=-0.055 Sum_probs=90.2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhc----CCCHH
Q 038673 164 AKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSK----CGSID 239 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~----~g~~~ 239 (548)
+++++|+.+|++..+.| .|+.. +...+...+.+++|.+.++...+.| +......|..+|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCccHH
Confidence 46788999999998887 44443 5566667778888999999998875 66778888888888 88999
Q ss_pred HHHHHHhcCCC-CChhhhHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 038673 240 DAYRIFVGMKQ-RNVFSYSSMILGFAM----HGRAHAAIQLFGDMVKTET 284 (548)
Q Consensus 240 ~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 284 (548)
+|.+.|++..+ .++..+..|-..|.. .++.++|+..|++..+.|.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988764 577788888888888 8999999999999988753
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.07 E-value=0.0042 Score=45.88 Aligned_cols=81 Identities=19% Similarity=0.124 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHH
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALI 229 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 229 (548)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+..+. +..++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CHHHHHHHH
Confidence 4566677777777888888888887776643 334556667777777777888888777777776533 566666666
Q ss_pred HHHhc
Q 038673 230 DMYSK 234 (548)
Q Consensus 230 ~~y~~ 234 (548)
..+.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.97 E-value=0.012 Score=60.60 Aligned_cols=180 Identities=8% Similarity=-0.045 Sum_probs=93.0
Q ss_pred chHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCC----------cHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 038673 33 LKDSISLYCSMRREGIGPV-SFTLSALFKACTEVLD----------VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKC 101 (548)
Q Consensus 33 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 101 (548)
.++|++.++++... .|+ ..+|+.--.++...++ ++++...++.+++.. +.+..+|+.-.-++.+.
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 34566666666653 343 3335444444444444 566666666666654 55566666655555555
Q ss_pred C--ChHHHHHHHccCCC---CCeehHHHHHHHHHhCC-ChHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHH
Q 038673 102 G--FLGCSRKVFDEMPE---RDVVSWTELIVAYANNG-DMESAGGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEY 172 (548)
Q Consensus 102 g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l 172 (548)
| +++++.+.++++.+ +|..+|+.-...+.+.| .++++++.++++.+. |..+|+.....+.+.+...++
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~--- 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS--- 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS---
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc---
Confidence 6 44666665555543 33344444444444444 444444444444322 233343333333221111000
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHH
Q 038673 173 FERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD 240 (548)
Q Consensus 173 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~ 240 (548)
+ ... -...+.++++.+.+..++...+. +..+|+-+-..+.+.+..++
T Consensus 198 -------~-~~~----------~~~~~~~~eel~~~~~ai~~~P~---~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 -------G-PQG----------RLPENVLLKELELVQNAFFTDPN---DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp -------S-SCC----------SSCHHHHHHHHHHHHHHHHHCSS---CSHHHHHHHHHHSCCCCCSC
T ss_pred -------c-ccc----------cccHHHHHHHHHHHHHHHhhCCC---CccHHHHHHHHHhcCCCccc
Confidence 0 000 00013467888888888877654 88888888888888777444
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.92 E-value=0.0048 Score=61.08 Aligned_cols=96 Identities=13% Similarity=-0.039 Sum_probs=74.3
Q ss_pred hcCCHHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--
Q 038673 265 MHGRAHAAIQLFGDMVKT---ETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP-- 339 (548)
Q Consensus 265 ~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 339 (548)
..|++++|+.++++.++. -+.|+... ...+++.|..+|...|++++|+.++++..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~--------------------~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVY--------------------MLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHH--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchH--------------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 457899999999987653 23344322 23578899999999999999999998761
Q ss_pred -------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCchh
Q 038673 340 -------VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFE-----LEPDKIGN 380 (548)
Q Consensus 340 -------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 380 (548)
..|+ ..+++.|-..|...|++++|+.+++++++ +.|++|.+
T Consensus 370 ~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 3455 56788888999999999999999999887 57777643
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.91 E-value=0.0012 Score=65.33 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=68.2
Q ss_pred HcCCHHHHHHHHHhCC------C---CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCc---hhHHHHH
Q 038673 324 RAGCLEEALKMVEKMP------V---EPN-GGVWGALLGACQIHRNPEIAQIAANHLFE-----LEPDKI---GNYIILS 385 (548)
Q Consensus 324 ~~g~~~~A~~~~~~m~------~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 385 (548)
..|++++|+.++++.. + .|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ ..|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3578999999887651 2 343 56788899999999999999999999887 455554 5788999
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 038673 386 NIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 386 ~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.+|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.88 E-value=0.015 Score=62.87 Aligned_cols=156 Identities=15% Similarity=0.083 Sum_probs=99.7
Q ss_pred HHHHhCCChHHHHH-HHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHH
Q 038673 127 VAYANNGDMESAGG-LFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYAN 205 (548)
Q Consensus 127 ~~~~~~g~~~~A~~-~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 205 (548)
......+++++|.+ ++..++. ......++..+.+.|.+++|+++.+. |+ .-.......|+++.|.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHH
Confidence 34456788888887 6644441 22237777778888888888876531 11 1123345678888888
Q ss_pred HHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038673 206 WVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETK 285 (548)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 285 (548)
++.+.+ .+...|..|..++.+.|+++.|.+.|.++.. |..+...|...|+.+...++-+.....|-
T Consensus 673 ~~~~~~--------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~~~- 738 (814)
T 3mkq_A 673 DLLTDE--------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAETTGK- 738 (814)
T ss_dssp HHHTTC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHhh--------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 875432 3778899999999999999999999888754 44455555566776665555555444321
Q ss_pred CCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038673 286 PNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP 339 (548)
Q Consensus 286 p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (548)
++.-..+|.+.|++++|++++.++.
T Consensus 739 -----------------------------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 739 -----------------------------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp -----------------------------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred -----------------------------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 3334445556667777666666554
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.88 E-value=0.0033 Score=49.20 Aligned_cols=76 Identities=14% Similarity=-0.063 Sum_probs=42.5
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcC
Q 038673 169 AIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 169 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 248 (548)
|+..|++..+.. +.+...+..+...+...|++++|...++.+++.... +...+..+..+|.+.|++++|...|++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555554432 224445555555566666666666666666555433 5555666666666666666666665554
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.88 E-value=0.007 Score=59.98 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=80.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038673 259 MILGFAMHGRAHAAIQLFGDMVKTE---TKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMV 335 (548)
Q Consensus 259 li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 335 (548)
.+..+...|++++|+.++++.++.. +.|+... ...+++.+..+|...|++++|+.++
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~--------------------~~~~~~~L~~~y~~~g~~~eA~~~~ 352 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIY--------------------QLKVLDCAMDACINLGLLEEALFYG 352 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH--------------------HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchH--------------------HHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3556778899999999999988632 2333221 2356888999999999999999999
Q ss_pred HhCC---------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCchhHH
Q 038673 336 EKMP---------VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFE-----LEPDKIGNYI 382 (548)
Q Consensus 336 ~~m~---------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 382 (548)
++.. ..|+ ..+++.|-..|...|++++|+.+++++++ +.|++|.+-.
T Consensus 353 ~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 353 TRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 8761 3455 56788888999999999999999999887 6788774443
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.86 E-value=5.7e-05 Score=73.28 Aligned_cols=237 Identities=14% Similarity=0.126 Sum_probs=175.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 17 PFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 17 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
+..|+.|..++...++..+|++.|-+. -|+..|..++.++.+.|.++.-...+....+. ..++.+=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHH
Confidence 346999999999999999998776322 26677999999999999999988888766654 456677789999
Q ss_pred HHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCC------------------------CCChhH
Q 038673 97 MYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELP------------------------LKDKVA 152 (548)
Q Consensus 97 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~------------------------~~~~~~ 152 (548)
+|++.+++.+-.+++ ..||+.-...+..-|...|.++.|.-+|..+. ..++.|
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 999999976544332 23777778888889999999999988887763 236789
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH
Q 038673 153 WTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY 232 (548)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y 232 (548)
|-.+-.+|...+.+.-|--.--.+. +.|| .+..++.-|-..|.+++-..+++.-. |.+- ....+++-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl--glEr-AHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL--GLER-AHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCc-hhHHHHHHHHHHH
Confidence 9999999999998887654433332 2222 23445667788899998888888765 3332 4888999999999
Q ss_pred hcCCCHHHHHHHHhc----CCCC-------ChhhhHHHHHHHHhcCCHHHHHH
Q 038673 233 SKCGSIDDAYRIFVG----MKQR-------NVFSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 233 ~~~g~~~~A~~~~~~----~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 274 (548)
+|-. .++..+.++. +.-| ....|.-++-.|.+..+++.|..
T Consensus 274 sKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 9863 3444444332 2222 45679999999999999987764
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.74 E-value=0.0016 Score=54.10 Aligned_cols=110 Identities=13% Similarity=-0.009 Sum_probs=54.6
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCh----------hHHHHHHHHHHHcCCCCCChHhHHHHHHHH
Q 038673 162 QNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVI----------KYANWVCEIAEGSGFGPINNVVVGSALIDM 231 (548)
Q Consensus 162 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~----------~~a~~~~~~~~~~~~~p~~~~~~~~~li~~ 231 (548)
+.+.+++|++.+++..+.. +-+...+..+..++...+++ ++|...|+++++..+. ...+|..+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHHHHHH
Confidence 3344555555555555432 22444455455555554443 2555555555554433 44455555555
Q ss_pred HhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038673 232 YSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 232 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 297 (548)
|...|.+ .|+- -...|++++|++.|++.++ +.|+...|...+..
T Consensus 90 y~~lg~l-----------~P~~---------~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 90 YTSFAFL-----------TPDE---------TEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHH-----------CCCH---------HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhccc-----------Ccch---------hhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 5444321 0110 0001477888888888777 56766665544443
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.72 E-value=0.0049 Score=50.34 Aligned_cols=114 Identities=10% Similarity=-0.042 Sum_probs=91.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChh
Q 038673 266 HGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGG 345 (548)
Q Consensus 266 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 345 (548)
.++.++|++.|++..+.| .|+ .. |...|...+..++|.+.|++.-..-++.
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~--------------------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~ 58 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMF--------------------------GC--LSLVSNSQINKQKLFQYLSKACELNSGN 58 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTT--------------------------HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHh--------------------------hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHH
Confidence 346789999999998865 222 12 5666777788888999998875345677
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCCc
Q 038673 346 VWGALLGACQI----HRNPEIAQIAANHLFELEPDKIGNYIILSNIYAS----AGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 346 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 410 (548)
.+..|-..|.. .++.++|...+++..+. .++..+..|+.+|.. .+++++|.+.+++..+.|..
T Consensus 59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 78788888877 78999999999999876 566789999999999 89999999999999887753
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.64 E-value=0.0046 Score=47.13 Aligned_cols=87 Identities=14% Similarity=0.036 Sum_probs=64.2
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHH
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTM 94 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 94 (548)
.+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++..++..+-.++......+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 356778888899999999999999999988753 2256678888888889999999999998887754223455555555
Q ss_pred HHHHHHcC
Q 038673 95 IGMYVKCG 102 (548)
Q Consensus 95 i~~~~~~g 102 (548)
...+.+.+
T Consensus 84 ~~~l~~~~ 91 (100)
T 3ma5_A 84 QDAKLKAE 91 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcc
Confidence 55555443
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.44 E-value=0.018 Score=43.36 Aligned_cols=64 Identities=22% Similarity=0.182 Sum_probs=54.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCCC-hh-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 318 MVDLLGRAGCLEEALKMVEKMP-VEPN-GG-VWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 318 li~~~~~~g~~~~A~~~~~~m~-~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
....+.+.|++++|.+.+++.. ..|+ .. .|..+..++...|+++.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4567788999999999998874 4454 56 788888899999999999999999999999988666
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.40 E-value=0.008 Score=45.36 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=53.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCch-hHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 038673 351 LGACQIHRNPEIAQIAANHLFELEPDKIG-NYIILSNIYASAGMWDDVSRVRRLLKMTG 408 (548)
Q Consensus 351 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 408 (548)
...+...|+++.|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 45677899999999999999999999999 99999999999999999999999987643
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.26 E-value=0.2 Score=47.77 Aligned_cols=143 Identities=14% Similarity=0.168 Sum_probs=89.5
Q ss_pred CCChhhhHHHHHHHH--hcC---CHHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHH
Q 038673 250 QRNVFSYSSMILGFA--MHG---RAHAAIQLFGDMVKTETKPNGVT-FIGVLTACSHVGLKCYGVSPSTDHYACMVDLLG 323 (548)
Q Consensus 250 ~~~~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~ 323 (548)
..+...|...+.+.. ..+ ...+|..+|++.++ +.|+... +..+.-++.. ....+ |....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~--~~~~~--~~~~~--------- 255 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV--RHSQH--PLDEK--------- 255 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HHHHS--CCCHH---------
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--HhccC--CCchh---------
Confidence 346777777776543 233 35789999999988 5777432 2211111110 00000 00000
Q ss_pred HcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 038673 324 RAGCLEEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 324 ~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
.......|.+-...+. ...++.+|..+-..+...|+++.|...++++++++|+ ...|..++.++.-.|++++|.+.++
T Consensus 256 ~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 256 QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0001123333333343 2345778877777777789999999999999999975 5578899999999999999999998
Q ss_pred HHHhCC
Q 038673 403 LLKMTG 408 (548)
Q Consensus 403 ~m~~~g 408 (548)
+.....
T Consensus 335 ~AlrL~ 340 (372)
T 3ly7_A 335 TAFNLR 340 (372)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 886644
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.22 E-value=0.067 Score=50.97 Aligned_cols=141 Identities=10% Similarity=-0.025 Sum_probs=93.6
Q ss_pred CCChhHHHHHHHHHH--HCC---ChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHH---ccC--C---hhHHHHHHHHHH
Q 038673 147 LKDKVAWTAMVTGYV--QNA---KPREAIEYFERMQYAGVETD-YVTLVGVISACA---QLG--V---IKYANWVCEIAE 212 (548)
Q Consensus 147 ~~~~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~---~~g--~---~~~a~~~~~~~~ 212 (548)
..+...|...+.+.. ..+ ...+|..+|++..+. .|+ ...+..+.-++. ..+ . .......+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 447778888776643 333 347899999998875 555 233443333332 111 1 111111222222
Q ss_pred HcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC--CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 038673 213 GSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ--RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVT 290 (548)
Q Consensus 213 ~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 290 (548)
.....| .+..++.++...+...|++++|...++++.. ++...|..+-..+...|++++|.+.|++... +.|...|
T Consensus 269 a~~~~~-~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 269 TLPELN-NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp TCGGGT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred hcccCC-cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 223334 5888999988888888999999999998874 6666666777788899999999999999988 5777777
Q ss_pred HH
Q 038673 291 FI 292 (548)
Q Consensus 291 ~~ 292 (548)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.18 E-value=0.24 Score=39.13 Aligned_cols=135 Identities=9% Similarity=0.046 Sum_probs=93.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHH------HHcCCHHHHHHHHH
Q 038673 263 FAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLL------GRAGCLEEALKMVE 336 (548)
Q Consensus 263 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~------~~~g~~~~A~~~~~ 336 (548)
+...|..++..++..+.... .+..-++-+|.-....- +-...-..++.- ..+|++......+-
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a--------~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESI--------DCRYMFQVLDKIGSYFDLDKCQNLKSVVECGV 85 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHC--------CHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhh--------chhHHHHHHHHHhhhcCcHhhhcHHHHHHHHH
Confidence 45578899999999888764 22223333332211110 111111111111 24566677776666
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 337 KMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 337 ~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
.+. .+...+...+......|..++-.++...++.-.|.++.....++++|.+.|+..+|.+++++.-++|++
T Consensus 86 ~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 86 INN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred Hhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 664 456677788899999999999999999987777778889999999999999999999999999999985
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.91 E-value=0.045 Score=44.80 Aligned_cols=92 Identities=9% Similarity=-0.002 Sum_probs=71.5
Q ss_pred CCChhHHHHHHHHHHhcC---CHHHHHHHHHHHhhcC-C-CCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCce
Q 038673 341 EPNGGVWGALLGACQIHR---NPEIAQIAANHLFELE-P-DKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGY 415 (548)
Q Consensus 341 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 415 (548)
.++..+...+-.++.+.+ +.++|+.+++.+.+.+ | ++...+..|+-+|.+.|++++|.++++.+.+. +
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i----e--- 101 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----E--- 101 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----C---
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----C---
Confidence 367777777778888888 6679999999999988 7 45678888999999999999999999998652 2
Q ss_pred eEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCccc
Q 038673 416 SWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQP 459 (548)
Q Consensus 416 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 459 (548)
|...++......+.+.++++|++-
T Consensus 102 --------------------P~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 102 --------------------PQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred --------------------CCCHHHHHHHHHHHHHHHHhhHHH
Confidence 233455555566777888888754
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.86 Score=38.24 Aligned_cols=127 Identities=11% Similarity=0.048 Sum_probs=78.2
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHH
Q 038673 195 CAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQ 274 (548)
Q Consensus 195 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 274 (548)
....|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|.+... +..+.-.|...|+.+.-.+
T Consensus 15 AL~lg~l~~A~e~a~~l--------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence 34567777777776654 2667788888888888888888888877653 3444445566677666555
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 038673 275 LFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGAC 354 (548)
Q Consensus 275 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 354 (548)
+-+.....|- ++.-...+.-.|+++++.++|.+...-|... -..
T Consensus 82 la~iA~~~g~------------------------------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A 125 (177)
T 3mkq_B 82 MQNIAQTRED------------------------------FGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVA 125 (177)
T ss_dssp HHHHHHHTTC------------------------------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHH
T ss_pred HHHHHHHCcc------------------------------HHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHH
Confidence 5444443321 4444555666788888888887765222211 123
Q ss_pred HhcCCHHHHHHHHHHH
Q 038673 355 QIHRNPEIAQIAANHL 370 (548)
Q Consensus 355 ~~~~~~~~a~~~~~~~ 370 (548)
..+|..+.|.++.+.+
T Consensus 126 ~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 126 KANGDEAAASAFLEQA 141 (177)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCcHHHHHHHHHHh
Confidence 3466666777666554
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.33 E-value=0.4 Score=51.65 Aligned_cols=131 Identities=14% Similarity=0.140 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHH
Q 038673 92 NTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIE 171 (548)
Q Consensus 92 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 171 (548)
..++..+.+.|..+.|.++.+.- ..-.....+.|++++|.++.+.+. +...|..+...+.+.|+++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 67777778888888888765321 122334567788888888877664 56789999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 172 YFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 172 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
.|.++.. |..+...+...++.+...++-+.+...|. ++....+|.+.|++++|.+++.++.
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK--------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc--------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 9987742 34455555557777776666666555442 2334455667788888887776654
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.33 E-value=0.049 Score=49.77 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=71.5
Q ss_pred HHHHHHHHHhCC-CCCC---hhHHHHHHHHHHh-----cCCHHHHHHHHHHHhhcCCCC-chhHHHHHHHHHHc-CCchH
Q 038673 328 LEEALKMVEKMP-VEPN---GGVWGALLGACQI-----HRNPEIAQIAANHLFELEPDK-IGNYIILSNIYASA-GMWDD 396 (548)
Q Consensus 328 ~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 396 (548)
..+|...+++.- +.|+ ...|..|...|.. .|+.++|++.|++.+++.|+. ..++...+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 455666666553 5676 5678888888888 599999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 038673 397 VSRVRRLLKMTGLKKNPG 414 (548)
Q Consensus 397 a~~~~~~m~~~g~~~~~~ 414 (548)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877664454
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.25 E-value=0.095 Score=39.10 Aligned_cols=79 Identities=11% Similarity=0.039 Sum_probs=59.8
Q ss_pred CcCHHHHHHHHHHHHHcCC---HHHHHHHHHhCC-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 038673 309 SPSTDHYACMVDLLGRAGC---LEEALKMVEKMP-VEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYII 383 (548)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 383 (548)
+.++..+..+..++...++ .++|..++++.- ..|+ +..+..+-..+...|+++.|...|+++++.+|+++ ....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~-~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL-DRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC-CHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-cHHH
Confidence 3466778888888865554 699999998874 5666 55666666889999999999999999999999843 4555
Q ss_pred HHHHH
Q 038673 384 LSNIY 388 (548)
Q Consensus 384 l~~~~ 388 (548)
+....
T Consensus 82 i~~~I 86 (93)
T 3bee_A 82 IIESI 86 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.87 E-value=0.17 Score=38.47 Aligned_cols=74 Identities=14% Similarity=0.018 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCC----C-----CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 311 STDHYACMVDLLGRAGCLEEALKMVEKMP----V-----EPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~-----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
+..-+..|...+.+.|+++.|...|+... - .+...++..|..++.+.|+++.|...+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44556778889999999999999987752 0 12366788888999999999999999999999999987654
Q ss_pred HHH
Q 038673 382 IIL 384 (548)
Q Consensus 382 ~~l 384 (548)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.68 Score=38.87 Aligned_cols=129 Identities=15% Similarity=0.099 Sum_probs=90.4
Q ss_pred HHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCC
Q 038673 229 IDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGV 308 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 308 (548)
.+....+|+++.|.++.+.+ .+...|..|......+|+.+-|.+.|.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------------------------- 62 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS--------------------------- 62 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------------------------
Confidence 34556799999999998876 5678999999999999999999999998765
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 309 SPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
+..+.-.|.-.|+.+.-.++-+....+- -++.-...+...|+++++.+++.+.-.. .++-.+
T Consensus 63 ------~~~L~~Ly~~tg~~e~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r~---------~eA~~~ 124 (177)
T 3mkq_B 63 ------FDKLSFLYLVTGDVNKLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGSL---------PLAYAV 124 (177)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTCH---------HHHHHH
T ss_pred ------HHHHHHHHHHhCCHHHHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCCh---------HHHHHH
Confidence 6667777788888777655544332111 2445556677789999999888654321 112222
Q ss_pred H-HcCCchHHHHHHHHH
Q 038673 389 A-SAGMWDDVSRVRRLL 404 (548)
Q Consensus 389 ~-~~g~~~~a~~~~~~m 404 (548)
+ ..|--+.|.++.+.+
T Consensus 125 A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 125 AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHTTCHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHh
Confidence 2 345566777776655
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.21 E-value=1.6 Score=34.49 Aligned_cols=144 Identities=15% Similarity=-0.019 Sum_probs=83.4
Q ss_pred HHHHHHH--hhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-CCee---hHHHHHHH
Q 038673 55 LSALFKA--CTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPE-RDVV---SWTELIVA 128 (548)
Q Consensus 55 ~~~ll~a--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~---~~~~li~~ 128 (548)
...|+.| ..-.|.++++.++.....+.. +..-+|=+|.-....-+-+...++++.+-. -|.. -.-.++.+
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C 83 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVEC 83 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHH
Confidence 3444444 344567777777777766654 233333333322233333444444444322 1111 11223444
Q ss_pred HHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHH
Q 038673 129 YANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVC 208 (548)
Q Consensus 129 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 208 (548)
|++.|. +....+.-+.....+|+-++-.+++..+.. +.+|+......+..||.+.|+..++.+++
T Consensus 84 ~~~~n~--------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 84 GVINNT--------------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp HHHTTC--------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcc--------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 444332 334455566777888888888888888544 34777778888888888888888888888
Q ss_pred HHHHHcCCC
Q 038673 209 EIAEGSGFG 217 (548)
Q Consensus 209 ~~~~~~~~~ 217 (548)
.++-+.|+.
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 888888865
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.68 E-value=4.2e-06 Score=80.99 Aligned_cols=226 Identities=14% Similarity=0.078 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHH
Q 038673 151 VAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALID 230 (548)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~ 230 (548)
..|+.+..++.+.++..+|++.|-+. -|...|..++.++.+.|.+++-..++..+.+..- ++.+-+.|+-
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k----e~~IDteLi~ 124 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR----ESYVETELIF 124 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC----STTTTHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc----ccccHHHHHH
Confidence 34555555555555555444433111 1233444555555555555555555544433321 3333445555
Q ss_pred HHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCC-----cc
Q 038673 231 MYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGL-----KC 305 (548)
Q Consensus 231 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~ 305 (548)
+|++.+++.+-++++. .||+.-...+..-|...|.++.|.-+|..+-.-. .|-..+.+.|. ..
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~a---------kLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG---------RLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCT---------TTSSSSSSCSGGGSSTTT
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHH---------HHHHHHHHHHHHHHHHHH
Confidence 5555555444332221 2444444445555555555555544443321100 00000000000 00
Q ss_pred CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 038673 306 YGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILS 385 (548)
Q Consensus 306 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 385 (548)
..-.-++.||-.+-.+|...+.+.-|.-.--.+-+.||. ...++..|...|.+++-+.+++..+.++.-+.+.+.-|+
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELa 270 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 270 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHH
T ss_pred HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 011124455666666677777665554333222223331 223445567777777777777777777777777888888
Q ss_pred HHHHHcCCchHHHHHH
Q 038673 386 NIYASAGMWDDVSRVR 401 (548)
Q Consensus 386 ~~~~~~g~~~~a~~~~ 401 (548)
-+|++- +.++..+-+
T Consensus 271 ILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHL 285 (624)
T ss_dssp HHHHSS-CTTHHHHHH
T ss_pred HHHHhc-CHHHHHHHH
Confidence 777764 344444443
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.21 E-value=0.66 Score=36.43 Aligned_cols=104 Identities=11% Similarity=-0.016 Sum_probs=66.9
Q ss_pred CHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHH---HHHHHHHHhhcC-C-CCchhHHHHHHHHHHcCCchHHHH
Q 038673 327 CLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEI---AQIAANHLFELE-P-DKIGNYIILSNIYASAGMWDDVSR 399 (548)
Q Consensus 327 ~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~ 399 (548)
.+..+.+-|.+.. -.|+..+--.+..++.+.++... ++.+++.+...+ | ........|+-++.+.|++++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444331 23666666666677777776655 888888888765 5 345567788889999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCc
Q 038673 400 VRRLLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGY 457 (548)
Q Consensus 400 ~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 457 (548)
+.+.+.+. + |...++......+.++|.++|+
T Consensus 96 ~~~~lL~~----e-----------------------P~n~QA~~Lk~~i~~~i~kdGl 126 (126)
T 1nzn_A 96 YVRGLLQT----E-----------------------PQNNQAKELERLIDKAMKKDGL 126 (126)
T ss_dssp HHHHHHHH----C-----------------------TTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHh----C-----------------------CCCHHHHHHHHHHHHHHHhccC
Confidence 99888642 2 3334555555566677777663
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.10 E-value=0.71 Score=34.93 Aligned_cols=68 Identities=10% Similarity=-0.151 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 038673 150 KVAWTAMVTGYVQNAKPREAIEYFERMQYAG------VETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFG 217 (548)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 217 (548)
...+..|...+.+.|+++.|...|+...+.- -.+....+..+..++.+.|+++.|...++.+.+..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3445567777778888888888777765421 1223445566666677777777777777777665533
No 232
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.87 E-value=5.9 Score=36.70 Aligned_cols=145 Identities=11% Similarity=0.112 Sum_probs=87.8
Q ss_pred HcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHH----HHHH
Q 038673 100 KCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIE----YFER 175 (548)
Q Consensus 100 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~----l~~~ 175 (548)
..|++=+|.+. |.++..-|.+.+++++|.+++.. -...+.+.|+...|-+ +.+-
T Consensus 25 ~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev 82 (312)
T 2wpv_A 25 KAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEV 82 (312)
T ss_dssp HHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHH
Confidence 34555556554 45566666666677766665432 2234455666655544 3455
Q ss_pred HHHCCCCCCHhhHHHHHHHHHccCC--h---hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 038673 176 MQYAGVETDYVTLVGVISACAQLGV--I---KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 176 m~~~g~~p~~~t~~~ll~~~~~~g~--~---~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 250 (548)
..+.++++|......++..+..... . .-..+......+.|-.|..++.....+...|.+.|++.+|+..|-.-..
T Consensus 83 ~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~ 162 (312)
T 2wpv_A 83 YDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTH 162 (312)
T ss_dssp HHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Confidence 5667888888877777777655332 1 2223333333444443446888999999999999999999998863332
Q ss_pred CChhhhHHHHHHHHhc
Q 038673 251 RNVFSYSSMILGFAMH 266 (548)
Q Consensus 251 ~~~~~~~~li~~~~~~ 266 (548)
.+...+..|+--+...
T Consensus 163 ~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 163 DSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 3455555555544443
No 233
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.72 E-value=0.69 Score=37.76 Aligned_cols=79 Identities=13% Similarity=-0.046 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC---ChhHHHHHHHHHHHcC-CCCCChHhHHHHHHHHHhcCCCHHHHHH
Q 038673 168 EAIEYFERMQYAGVETDYVTLVGVISACAQLG---VIKYANWVCEIAEGSG-FGPINNVVVGSALIDMYSKCGSIDDAYR 243 (548)
Q Consensus 168 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-~~p~~~~~~~~~li~~y~~~g~~~~A~~ 243 (548)
.+.+-|.+....| .++..+...+..++.+.. ++++|..+++.+.+.. +. .....+-.|.-+|.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--chHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444433 244444444444555544 4445555555555543 11 123333334444444444444444
Q ss_pred HHhcCC
Q 038673 244 IFVGMK 249 (548)
Q Consensus 244 ~~~~~~ 249 (548)
.++.+.
T Consensus 93 y~~~lL 98 (152)
T 1pc2_A 93 YVRGLL 98 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.26 E-value=0.87 Score=36.84 Aligned_cols=100 Identities=10% Similarity=0.100 Sum_probs=73.3
Q ss_pred CCCCCcchHHHHHHHHHhCCCc------hHHHHHHHHHHHCCCCCChhh----HHHHHHH---hhccCCcHHHHHHHHHH
Q 038673 12 VKYKNPFLWTALIRGYILQGHL------KDSISLYCSMRREGIGPVSFT----LSALFKA---CTEVLDVSLGQQIHAQT 78 (548)
Q Consensus 12 ~~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~~----~~~ll~a---~~~~~~~~~a~~~~~~~ 78 (548)
|.+.|..+|=..+.-.-+.|++ ++.+++|++.... ++|+... |..+.-- +...+|.+.|+++|..+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3456788999999988888999 8889999988874 6775421 2221111 12347899999999999
Q ss_pred HHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccC
Q 038673 79 ILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEM 114 (548)
Q Consensus 79 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 114 (548)
++.. -.. ..+|......-.+.|++..|++++...
T Consensus 87 ~~~h-KkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 87 RANC-KKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HHHC-TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHh-HHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 8864 333 788888888888999999999997654
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.12 E-value=0.49 Score=38.26 Aligned_cols=100 Identities=9% Similarity=-0.001 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHcCCH------HHHHHHHHhCC--CCCC-hhHHHHHHH------HHHhcCCHHHHHHHHHHHhhcCC
Q 038673 311 STDHYACMVDLLGRAGCL------EEALKMVEKMP--VEPN-GGVWGALLG------ACQIHRNPEIAQIAANHLFELEP 375 (548)
Q Consensus 311 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~--~~p~-~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~p 375 (548)
|.++|-..++.+.+.|+. ++..++|++.- +.|+ ...|...+. .+...++++.|..+|+.++++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 667888888888888988 77777777652 3444 233333332 23445899999999999988755
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 376 DKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
.-+..+...+..-.++|+.+.|.+++......+.+
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55667777888889999999999999998876643
No 236
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.55 E-value=8.9 Score=35.81 Aligned_cols=133 Identities=10% Similarity=0.087 Sum_probs=76.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHH----HHHHHHCCCCCCHhhHHHHHHHHHc
Q 038673 122 WTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEY----FERMQYAGVETDYVTLVGVISACAQ 197 (548)
Q Consensus 122 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~ 197 (548)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ ++-+.+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44555566666666666665422 22344555666554443 3455567788888777777777665
Q ss_pred cCChh-HHHHHHHH----HHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHh
Q 038673 198 LGVIK-YANWVCEI----AEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAM 265 (548)
Q Consensus 198 ~g~~~-~a~~~~~~----~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 265 (548)
...-+ .=..+.+. -.+.|-.|..++.....+...|.+.+++.+|+..|-.-..+.+..+..|+--+..
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 54321 11223333 3344433446788888889999999999999888843222223455444444333
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.23 E-value=0.82 Score=48.15 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=50.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 352 GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
.-|...|+++.|.++.++....-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 447789999999999999999999999999999999999999999999998773
No 238
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=90.14 E-value=8 Score=32.88 Aligned_cols=121 Identities=15% Similarity=0.066 Sum_probs=54.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCCh
Q 038673 87 DLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKP 166 (548)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 166 (548)
|..+....+.++.+.|+.+....+...+..++...-...+.++.+.|+.+....+...+..++...-...+.++.+.+..
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 137 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 137 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH
Confidence 33344444444444444333333333344444444444555555555544444444444455555444555555555543
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHH
Q 038673 167 REAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAE 212 (548)
Q Consensus 167 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 212 (548)
++...+..+.. .++...-...+.++.+.|.. .+...+..+.
T Consensus 138 -~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 138 -RAVEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp -GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHH
T ss_pred -HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 33333444432 23444445555555555543 3344444443
No 239
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.06 E-value=4.4 Score=29.92 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=41.7
Q ss_pred HHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHH
Q 038673 127 VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLV 189 (548)
Q Consensus 127 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 189 (548)
..+...|++++|..+.+.+..||...|-++-. .+.|..+++...+.++..+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34567777777777777777788888876654 46777777777777777766 45444443
No 240
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.90 E-value=4.7 Score=29.83 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=37.8
Q ss_pred HHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhH
Q 038673 127 VAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTL 188 (548)
Q Consensus 127 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 188 (548)
..+...|++++|..+.+.+..||...|-++-.. +.|..+++...+.++..+| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345666777777777777777777777666543 5566667766666666665 4444444
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.42 E-value=7.1 Score=31.23 Aligned_cols=91 Identities=8% Similarity=-0.018 Sum_probs=62.8
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCC-CchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcee
Q 038673 341 EPNGGVWGALLGACQIHRN---PEIAQIAANHLFELEPD-KIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKKNPGYS 416 (548)
Q Consensus 341 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s 416 (548)
.|+..+--.+..++.+..+ ..+++.+++.+....|. .......|+-++.+.|++++|.++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-------- 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-------- 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------
Confidence 4565555555556666554 45788888888887775 34566678888999999999999998886522
Q ss_pred EEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcc
Q 038673 417 WLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQ 458 (548)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 458 (548)
|...++.+.-..+.++|.++|++
T Consensus 108 -------------------P~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 108 -------------------RNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -------------------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -------------------CCcHHHHHHHHHHHHHHHHhchh
Confidence 23345555555667778888765
No 242
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=89.37 E-value=1.3 Score=40.45 Aligned_cols=80 Identities=11% Similarity=0.034 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcC-----CCHHHHHHHHhcCCC--C--ChhhhHHHHHHHHhc-CCHHH
Q 038673 202 KYANWVCEIAEGSGFGPINNVVVGSALIDMYSKC-----GSIDDAYRIFVGMKQ--R--NVFSYSSMILGFAMH-GRAHA 271 (548)
Q Consensus 202 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~-----g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~-g~~~~ 271 (548)
..|+..++++++....- .+...|..|...|.+. |+.++|.+.|++..+ | +..++......++.. |+.++
T Consensus 180 ~~A~a~lerAleLDP~~-~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 180 HAAVMMLERACDLWPSY-QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHhCCCc-ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34444444444443221 1334555555555552 555555555555542 2 244555555555553 55666
Q ss_pred HHHHHHHHHHc
Q 038673 272 AIQLFGDMVKT 282 (548)
Q Consensus 272 A~~l~~~m~~~ 282 (548)
|.+.+++.+..
T Consensus 259 a~~~L~kAL~a 269 (301)
T 3u64_A 259 FDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcC
Confidence 66666665553
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.80 E-value=0.91 Score=44.03 Aligned_cols=68 Identities=16% Similarity=0.034 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH-----hCCCccCCc
Q 038673 347 WGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK-----MTGLKKNPG 414 (548)
Q Consensus 347 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~ 414 (548)
...++.++...|+.+.+...++.+...+|-+...+..|+.+|.+.|+..+|.+.|+... +.|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34456677889999999999999999999999999999999999999999999988875 458877664
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.66 E-value=2 Score=31.87 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 038673 32 HLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIG 96 (548)
Q Consensus 32 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 96 (548)
+.-+..+-++.+....+.|++....+.|+||.+.+++..|.++++-+...- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 344666777777778889999999999999999999999999999876653 444566777664
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.48 E-value=14 Score=41.49 Aligned_cols=190 Identities=9% Similarity=-0.020 Sum_probs=114.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC----C-------------
Q 038673 190 GVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQR----N------------- 252 (548)
Q Consensus 190 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~------------- 252 (548)
.++..+...+..+.+.++.... | .+....-.+..+|..+|++++|...|.+.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------N-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------C-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------c-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 3445555666666665544332 2 34444566788899999999999999887420 0
Q ss_pred ---------hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHH
Q 038673 253 ---------VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLG 323 (548)
Q Consensus 253 ---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~ 323 (548)
..-|.-++..+-+.|.++.++++-+..++.. .++.... ....|..+.+.+.
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-~~~~~~~-------------------~~~l~~~iFk~~L 949 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDL-------------------SIAITHETLKTAC 949 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-CSCCHHH-------------------HHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cCCChhh-------------------HHHHHHHHHHHHH
Confidence 0124556667777788888887777666532 2221111 1235778888899
Q ss_pred HcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHH------------HHHHHH-Hhhc-CCCC-chhHHHHHHH
Q 038673 324 RAGCLEEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIA------------QIAANH-LFEL-EPDK-IGNYIILSNI 387 (548)
Q Consensus 324 ~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a------------~~~~~~-~~~~-~p~~-~~~~~~l~~~ 387 (548)
..|++++|...+-.++ ..--......|+...+..|..+.- ..++.. +... ++.+ +..|..|-.-
T Consensus 950 ~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ 1029 (1139)
T 4fhn_B 950 AAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSW 1029 (1139)
T ss_dssp HHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHH
T ss_pred hhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhh
Confidence 9999999999888775 122255667777665555544333 333322 2222 3343 3356666666
Q ss_pred HHHcCCchHHHHH-HHHHHh
Q 038673 388 YASAGMWDDVSRV-RRLLKM 406 (548)
Q Consensus 388 ~~~~g~~~~a~~~-~~~m~~ 406 (548)
+...|++..|..+ ++...+
T Consensus 1030 ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 1030 RYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHTTSCHHHHHHHHHHH
T ss_pred hhccCChHHHHHHHHHHHHH
Confidence 6777888777665 555443
No 246
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=87.61 E-value=13 Score=31.90 Aligned_cols=186 Identities=13% Similarity=0.087 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHcc
Q 038673 34 KDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDE 113 (548)
Q Consensus 34 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 113 (548)
.+++..+..... .+|...-...+.++...++.+....+.+ ++ -.+|..+....+.++.+.|+.+....+.+.
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l----~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~ 89 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDERAVEPLIK-AL----KDEDAWVRRAAADALGQIGDERAVEPLIKA 89 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HT----TCSCHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCccHHHHHHH-HH----cCCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 334444444433 2455555555666666665333333322 22 245666777777777777766555555555
Q ss_pred CCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038673 114 MPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLVGVIS 193 (548)
Q Consensus 114 m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 193 (548)
+..++...-...+.++.+.|+.+....+...+..++...-...+.++.+.|..+ +...+..+.. .+|...-...+.
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 666777676777777777777655555566666677766666677777766643 4555555543 356556666677
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC
Q 038673 194 ACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS 237 (548)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~ 237 (548)
++.+.+. ..+...+..+.+.. +..+-...+.++.+.+.
T Consensus 166 aL~~~~~-~~~~~~L~~~l~d~-----~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 166 ALGEIGG-ERVRAAMEKLAETG-----TGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHCS-HHHHHHHHHHHHHC-----CHHHHHHHHHHHHC---
T ss_pred HHHHhCc-hhHHHHHHHHHhCC-----CHHHHHHHHHHHHhcCC
Confidence 7777766 44555555555432 44555555666555443
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.50 E-value=3.9 Score=43.07 Aligned_cols=124 Identities=13% Similarity=0.053 Sum_probs=82.3
Q ss_pred HHHHHHHHccCC-hhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC-HHHHHHHHhcC-----------CCCChhh
Q 038673 189 VGVISACAQLGV-IKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS-IDDAYRIFVGM-----------KQRNVFS 255 (548)
Q Consensus 189 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~-----------~~~~~~~ 255 (548)
.+++..+.-.+. .+.|..+++.+.+.... .+.....+++..+.+.++ --+|.+++.+. ...+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~--~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPI--HDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCc--hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555555655 57899999998887644 344445556666555543 22344443332 2223211
Q ss_pred -----h-HHH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHc
Q 038673 256 -----Y-SSM----ILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRA 325 (548)
Q Consensus 256 -----~-~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~ 325 (548)
+ ..| ..-+...|+++.|+++-++... ..|+.. .+|..|...|...
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF-----------------------~tW~~La~vYi~l 384 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSF-----------------------ESWYNLARCHIKK 384 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCH-----------------------HHHHHHHHHHHHT
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhh-----------------------HHHHHHHHHHHHh
Confidence 1 112 2345668999999999999987 456643 6799999999999
Q ss_pred CCHHHHHHHHHhCC
Q 038673 326 GCLEEALKMVEKMP 339 (548)
Q Consensus 326 g~~~~A~~~~~~m~ 339 (548)
|+++.|+-.++.+|
T Consensus 385 ~d~e~ALLtLNScP 398 (754)
T 4gns_B 385 EEYEKALFAINSMP 398 (754)
T ss_dssp TCHHHHHHHHHHSC
T ss_pred ccHHHHHHHHhcCC
Confidence 99999999999997
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.81 E-value=5.2 Score=29.72 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=40.4
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 337 KMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 337 ~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
.+-+-|++.+..+.+.+|++.+++..|.++++-+...-.+....|..++.
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33477999999999999999999999999999998855444556776653
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.78 E-value=29 Score=33.34 Aligned_cols=287 Identities=10% Similarity=0.012 Sum_probs=146.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCC--------CCeehHHHHHHHHHhCC-ChHHHHHHHccCCC---CChhHH-----
Q 038673 91 GNTMIGMYVKCGFLGCSRKVFDEMPE--------RDVVSWTELIVAYANNG-DMESAGGLFNELPL---KDKVAW----- 153 (548)
Q Consensus 91 ~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~~---~~~~~~----- 153 (548)
...|...|.+.|+.++..+++..... +....-..++..+.... ..+.-.++..+..+ .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777666543 12233445555554432 22222222222210 011222
Q ss_pred -HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHccCChhHHHHHHHHHHHc--C--CCCCChHh
Q 038673 154 -TAMVTGYVQNAKPREAIEYFERMQYAGVETDY-----VTLVGVISACAQLGVIKYANWVCEIAEGS--G--FGPINNVV 223 (548)
Q Consensus 154 -~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~--~~p~~~~~ 223 (548)
.-++..|...|++.+|++++.++.+.=-..|. ..+..-+..|...+++.++...+...... . .+|.....
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 25788899999999999999988763112222 23455566778889999999988877542 2 22211112
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHH-----HHcCCCCCHhhHHHHHHH
Q 038673 224 VGSALIDMYS-KCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDM-----VKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 224 ~~~~li~~y~-~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m-----~~~g~~p~~~t~~~ll~a 297 (548)
....-.-++. ..+++..|...|-+.. .+|-..|.. .+..++.-| ... -+++. ..++..
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf-----------~~f~~~~~~-~~~~~lkYlvL~aLl~~-~r~el---~~~l~~ 245 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF-----------EGFDSVDSV-KALTSLKYMLLCKIMLG-QSDDV---NQLVSG 245 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH-----------HHHTTTCHH-HHHHHHHHHHHHHHHTT-CGGGH---HHHHHS
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH-----------hcccccccH-HHHHHHHHHHHHHHHcC-CHHHH---HHHhcc
Confidence 2222344555 7888988888775531 122222211 111111111 110 01111 111110
Q ss_pred HhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHH---HHHHHHHHhcCCHHHHHHHHHHHhh
Q 038673 298 CSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVW---GALLGACQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~ 372 (548)
-.. ..+ ..|....+..++.+| ..+++.+..++++... +..|.... ..|..... ...+.++
T Consensus 246 ~~~---~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i-- 310 (394)
T 3txn_A 246 KLA---ITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI-- 310 (394)
T ss_dssp HHH---HTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--
T ss_pred ccc---ccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--
Confidence 000 001 235555566666665 4678888888887764 44454421 11111111 1111111
Q ss_pred cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 373 LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 373 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
..|-....+..++..+.- ..++++..+.+|...|.-
T Consensus 311 ~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 311 IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 456666677777766643 578999999999887763
No 250
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=82.83 E-value=46 Score=34.19 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhc----C-C--------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 038673 267 GRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHV----G-L--------KCYGVSPSTDHYACMVDLLGRAGCLEEALK 333 (548)
Q Consensus 267 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----~-~--------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 333 (548)
.+.+.|..+|......+ ..+......+-...+.. + . ......++.....-.+....+.|+++.|.+
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 37788999988876543 22333322222222211 1 1 000011222223334444456678888888
Q ss_pred HHHhCCCCC-ChhHHHH-HHHHHHhcCCHHHHHHHHHHHhh
Q 038673 334 MVEKMPVEP-NGGVWGA-LLGACQIHRNPEIAQIAANHLFE 372 (548)
Q Consensus 334 ~~~~m~~~p-~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~ 372 (548)
.|+.|+..+ +..-|.- +-.+....|+.++|..+++.+.+
T Consensus 307 ~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888776322 2222222 22455667778888877777764
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.76 E-value=38 Score=33.19 Aligned_cols=93 Identities=11% Similarity=0.122 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC---CCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHhh---cCCCC----c
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKMP---VEPN-----GGVWGALLGACQIHRNPEIAQIAANHLFE---LEPDK----I 378 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~p~~----~ 378 (548)
....|...|...|++.+|.+++.+++ ...+ ...+..-+..|...+++..|..+.+++.. ..+.+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34568899999999999999999874 1222 34555566889999999999999998753 22222 2
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 379 GNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 379 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
..|...+..+...++|.+|.+.|-+..+
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4677888889999999999988776643
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.01 E-value=5.7 Score=31.28 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=30.3
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 38 SLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 38 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
+-++.+....+.|++....+.|++|.+.+|+..|.++++-+...- .+...+|..++
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~l 129 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHH
Confidence 333444444555666666666666666666666666666554432 33344455444
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.57 E-value=11 Score=29.67 Aligned_cols=66 Identities=6% Similarity=-0.102 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCC-CchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 341 EPNGGVWGALLGACQIHRN---PEIAQIAANHLFELEPD-KIGNYIILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 341 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.|+..+--.+..++.+..+ ...++.+++.+.+..|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3554444444445555443 45677888888877774 345666788888888888888888887754
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.64 E-value=8.4 Score=31.71 Aligned_cols=62 Identities=8% Similarity=-0.115 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCh-------hhHHHHHHHhhccCCcHHHHHHHHHHHHh
Q 038673 20 WTALIRGYILQGHLKDSISLYCSMRRE-GIGPVS-------FTLSALFKACTEVLDVSLGQQIHAQTILL 81 (548)
Q Consensus 20 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-------~~~~~ll~a~~~~~~~~~a~~~~~~~~~~ 81 (548)
+-.-++.+...|.++.|.-+.+.+... +..|+. .++..+..++...+++..|...|.+.++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 344466777888888888777665442 123332 24566677778888888888888887654
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.43 E-value=46 Score=32.60 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC----C-C----hhhhHHHHHHHHhcCCHHHHHHHHHHH
Q 038673 226 SALIDMYSKCGSIDDAYRIFVGMKQ----R-N----VFSYSSMILGFAMHGRAHAAIQLFGDM 279 (548)
Q Consensus 226 ~~li~~y~~~g~~~~A~~~~~~~~~----~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m 279 (548)
..|...|...|++.+|.+++..+.. . + +..+..-+..|...+++.+|..++++.
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4445555555555555555554431 0 0 123444444455555555555554444
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.02 E-value=39 Score=31.51 Aligned_cols=157 Identities=13% Similarity=0.076 Sum_probs=88.1
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHhhHHHHHHHH
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLF----GDMVKTETKPNGVTFIGVLTAC 298 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~ 298 (548)
.+|.++..=|.+.+++++|.+++..- ...+.++|+...|-++- +-..+.++++|..+...++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34455566677888888888765431 23344555554444433 3444456666666555555554
Q ss_pred hhcCC----------------ccCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCH
Q 038673 299 SHVGL----------------KCYG--VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNP 360 (548)
Q Consensus 299 ~~~~~----------------~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~ 360 (548)
..... .+.| -.-++.....+...|.+.+++.+|..-|- ....+++..+..++..+...+..
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCC
Confidence 43331 1112 22356667778888889999999988773 23233346666666444443322
Q ss_pred HHHHHHHHHHhhcCCCCchhHH-HHHHHHHHcCCchHHHHHHHHHHh
Q 038673 361 EIAQIAANHLFELEPDKIGNYI-ILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 361 ~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.....|. ..+--|.-.|+...|..+++...+
T Consensus 184 ---------------~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 ---------------HTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1111222 222346667888888887766654
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.79 E-value=50 Score=32.10 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 038673 152 AWTAMVTGYVQNAKPREAIEYFERMQYAGVET--DYVTLVGVISACAQLGVIKYANWVCEIAEG 213 (548)
Q Consensus 152 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 213 (548)
++..+...|.+.|++++|.+.|.++...-..+ -...+..++..+...+++..+......+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 56678888888888888888888887642222 234566677777888888888888877653
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=78.67 E-value=5.6 Score=38.41 Aligned_cols=68 Identities=10% Similarity=0.172 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHhh
Q 038673 223 VVGSALIDMYSKCGSIDDAYRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVK-----TETKPNGVT 290 (548)
Q Consensus 223 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 290 (548)
.+...++..+...|+.++|...+..+.. -+...|..+|.++...|+..+|++.|++..+ .|+.|...+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3456678888899999999888877663 3567899999999999999999999988754 377777654
No 259
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.98 E-value=26 Score=31.15 Aligned_cols=246 Identities=8% Similarity=-0.030 Sum_probs=125.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCChh---hHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChh--HHHHHHH
Q 038673 22 ALIRGYILQGHLKDSISLYCSMRREGIGPVSF---TLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLY--VGNTMIG 96 (548)
Q Consensus 22 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~ 96 (548)
+.+...++.|+.+.. +.+.+.|..++.. .-.+.+...+..|+.+. .+.+++.| ..++.. ...+.+.
T Consensus 7 ~~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g-~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLV----QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHG-ADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTT-CCTTCCCTTCCCHHH
T ss_pred hHHHHHHHcCCHHHH----HHHHHcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcC-CCCcccCCCCCCHHH
Confidence 344455677776544 4445556555422 11233444455566544 44555555 444322 1223344
Q ss_pred HHHHcCChHHHHHHHccCCCCCe---ehHHHHHHHHHhCCChHHHHHHHccCCCCChh-------------HHHHHHHHH
Q 038673 97 MYVKCGFLGCSRKVFDEMPERDV---VSWTELIVAYANNGDMESAGGLFNELPLKDKV-------------AWTAMVTGY 160 (548)
Q Consensus 97 ~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-------------~~~~li~~~ 160 (548)
..+..|+.+-+..+++.-..++. .-+ +.+...+..|+.+-...+++.-...+.. .++ .+...
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~A 155 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDA 155 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCBCTTCC-BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCcccC-CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHHH
Confidence 45567888877777776443322 222 2344456778887777777664433211 112 23334
Q ss_pred HHCCChhHHHHHHHHHHHC-CCCCCH---hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCC
Q 038673 161 VQNAKPREAIEYFERMQYA-GVETDY---VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 161 ~~~g~~~~A~~l~~~m~~~-g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g 236 (548)
+..|+.+-+..+ .+. |..++. ...+.+..+ +..+......++.+.+.+.|..+........+.+...++.|
T Consensus 156 ~~~~~~~~v~~L----l~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 156 AEKGHVEVLKIL----LDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHTCHHHHHHH----HHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHcCCHHHHHHH----HHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 455665444333 333 444432 222333333 34455555567777788887664111122334455666788
Q ss_pred CHHHHHHHHhcCC----CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 038673 237 SIDDAYRIFVGMK----QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 237 ~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 288 (548)
+.+-+..+++... ..|...++.+-- .+..|+. ++.+.+.+.|..|+.
T Consensus 231 ~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~-A~~~~~~----~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 231 HLGLVQRLLEQEHIEINDTDSDGKTALLL-AVELKLK----KIAELLCKRGASTDC 281 (285)
T ss_dssp CHHHHHHHHHSSSCCTTCCCTTSCCHHHH-HHHTTCH----HHHHHHHHHSSCSCC
T ss_pred CHHHHHHHHhccCCCccccCCCCCcHHHH-HHHcCcH----HHHHHHHHcCCCCCc
Confidence 8888888887322 233333444433 3345554 344555666776664
No 260
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=77.82 E-value=23 Score=27.64 Aligned_cols=83 Identities=8% Similarity=0.000 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHH---HHHHHhcCCCCC-h----hhhHHHHHHHHhcCCHHHH
Q 038673 201 IKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDD---AYRIFVGMKQRN-V----FSYSSMILGFAMHGRAHAA 272 (548)
Q Consensus 201 ~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~---A~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~A 272 (548)
+..+.+-|......|.. +..+-..+.-++.+..+..+ +..+++.+.+.+ + ...-.|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~~---s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSV---SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSCC---CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCCC---cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34444444444444432 55555556666666665544 666666655433 2 1233355577788888888
Q ss_pred HHHHHHHHHcCCCCCH
Q 038673 273 IQLFGDMVKTETKPNG 288 (548)
Q Consensus 273 ~~l~~~m~~~g~~p~~ 288 (548)
.+.++.+++ +.|+.
T Consensus 94 ~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHH--hCCCC
Confidence 888888877 56654
No 261
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.59 E-value=21 Score=30.42 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=72.4
Q ss_pred HHHHHHHHhCC-CCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 038673 329 EEALKMVEKMP-VEPNGGV---WGALLGACQIHRNPEIAQIAANHLFE--LEPDKIGNYIILSNIYASAGMWDDVSRVRR 402 (548)
Q Consensus 329 ~~A~~~~~~m~-~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 402 (548)
+.+.+.|...+ .+-|+.- |-..+..| ..++......+|..|.. +.-..+..|...+..+...|++++|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555554 4556443 43344433 24557789999999888 556677899999999999999999999999
Q ss_pred HHHhCCCccCCceeEEEccCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcc
Q 038673 403 LLKMTGLKKNPGYSWLEGDRGVIHEFRAGDLTHPNSTEIQQALGDLLDRLQADGYQ 458 (548)
Q Consensus 403 ~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 458 (548)
.-.+++-.|. +...+...+...+|...+++
T Consensus 140 ~GI~~~A~P~--------------------------~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 140 LGAENNCRPY--------------------------NRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHHTTCBSH--------------------------HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCccH--------------------------HHHHHHHHHHHHHHHhcCCC
Confidence 8877766542 24444556777888887773
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.42 E-value=19 Score=26.62 Aligned_cols=78 Identities=14% Similarity=0.045 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccC
Q 038673 66 LDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNEL 145 (548)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 145 (548)
...++|..|-+.+...+ . ...+--.-+..+...|++++|..+.+...-||.+.|-+|-.. +.|..+++...+.++
T Consensus 21 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 34577888887777665 2 333333334456778899999999988888888888877654 556667776666555
Q ss_pred CCC
Q 038673 146 PLK 148 (548)
Q Consensus 146 ~~~ 148 (548)
...
T Consensus 96 a~s 98 (116)
T 2p58_C 96 ARS 98 (116)
T ss_dssp TTC
T ss_pred HhC
Confidence 443
No 263
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=77.17 E-value=33 Score=29.13 Aligned_cols=141 Identities=16% Similarity=0.091 Sum_probs=61.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCCCh
Q 038673 87 DLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNAKP 166 (548)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 166 (548)
|..+....+..+.+.|..+....+.+.+..+|...-...+.++.+.|+.+....+...+..++...-...+.++.+.|..
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence 44444444444444444333333334444444444444455555555544444444444455555555555555555543
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC
Q 038673 167 REAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS 237 (548)
Q Consensus 167 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~ 237 (548)
+ +...+.++.. .+|...-...+.++.+.+..+. ...+..+.+ . .+..+-...+.++.+.+.
T Consensus 112 ~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d--~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 112 R-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERA-VEPLIKALK---D--EDGWVRQSAADALGEIGG 172 (211)
T ss_dssp G-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---C--SSHHHHHHHHHHHHHHCS
T ss_pred H-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHc---C--CCHHHHHHHHHHHHHhCc
Confidence 2 2333333332 2344444444555555544332 222222221 1 144444455555555554
No 264
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=75.63 E-value=35 Score=28.67 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=40.4
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHHHHHHHCC
Q 038673 85 TSDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMVTGYVQNA 164 (548)
Q Consensus 85 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 164 (548)
.+|..+....+..+.+.|..+....+.+.+..++...-...+.++.+.|..+....+...+..++...-...+.++.+.+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 44555555555555555554444444444444554444445555555555444444444444555544444455555444
Q ss_pred C
Q 038673 165 K 165 (548)
Q Consensus 165 ~ 165 (548)
.
T Consensus 105 ~ 105 (201)
T 3ltj_A 105 D 105 (201)
T ss_dssp C
T ss_pred c
Confidence 4
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.62 E-value=17 Score=29.96 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=20.1
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMK 249 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 249 (548)
+..+---+..+|.+.|++++|..+++.++
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 44555556777777777777777777765
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.94 E-value=15 Score=29.00 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=40.3
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 038673 337 KMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSN 386 (548)
Q Consensus 337 ~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 386 (548)
.+.+-|++.+..+.|.+|++.+|+..|.++++-+...-.+....|..++.
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34477999999999999999999999999999998855444546776653
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.91 E-value=64 Score=36.05 Aligned_cols=89 Identities=8% Similarity=0.037 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCC--hHhHHHHHHHHHhcCCCHHHHHHHHhcCCCC--ChhhhHHHHH
Q 038673 186 VTLVGVISACAQLGVIKYANWVCEIAEGSGFGPIN--NVVVGSALIDMYSKCGSIDDAYRIFVGMKQR--NVFSYSSMIL 261 (548)
Q Consensus 186 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~ 261 (548)
.-|..++..+.+.+.++.+.++-..+++....... ....|..+...+...|++++|...+-.++.. -......|+.
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~ 979 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34667777788888888888887777654322101 1236788888889999999998888776532 2345667788
Q ss_pred HHHhcCCHHHHHH
Q 038673 262 GFAMHGRAHAAIQ 274 (548)
Q Consensus 262 ~~~~~g~~~~A~~ 274 (548)
..+..|+.+.-+.
T Consensus 980 ~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 980 QLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHCCHHHHHH
T ss_pred HHHhCCChhhhhC
Confidence 8888887665443
No 268
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=73.73 E-value=1e+02 Score=33.25 Aligned_cols=167 Identities=15% Similarity=0.137 Sum_probs=91.8
Q ss_pred HHhCCChHHHHHHHccCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhhHH---HHHHHHHccCChh
Q 038673 129 YANNGDMESAGGLFNELPL--K-DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETDYVTLV---GVISACAQLGVIK 202 (548)
Q Consensus 129 ~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---~ll~~~~~~g~~~ 202 (548)
|+-.|+.+....++..+.+ . ++.-.-.+.-++...|+.+.+..+.+.+.... .|. .-|. ++.-+|+..|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHH
Confidence 4456666666666554321 2 22223334445567788888888888777642 222 2232 2344567778877
Q ss_pred HHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-CChhhhHH--HHHHHHhcCCH-HHHHHHHHH
Q 038673 203 YANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-RNVFSYSS--MILGFAMHGRA-HAAIQLFGD 278 (548)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~--li~~~~~~g~~-~~A~~l~~~ 278 (548)
...+++..+...... ++.-...+.-+..-.|+.+.+.++++.+.+ .|...-.. +.-|....|.. .+|++++..
T Consensus 578 aIq~LL~~~~~d~~d---~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 578 AVKRLLHVAVSDSND---DVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHCSCH---HHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCcH---HHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 777788877765322 443333333344446666667777765542 34433222 33344444443 577888888
Q ss_pred HHHcCCCCCHhhHHHHHHHHhhcCC
Q 038673 279 MVKTETKPNGVTFIGVLTACSHVGL 303 (548)
Q Consensus 279 m~~~g~~p~~~t~~~ll~a~~~~~~ 303 (548)
+.. .+|..+-...+.+.+..|.
T Consensus 655 L~~---D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 655 LTK---DPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHT---CSSHHHHHHHHHHHHHHST
T ss_pred Hcc---CCCHHHHHHHHHHHHHHhc
Confidence 864 4555555555555555554
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.97 E-value=31 Score=25.54 Aligned_cols=78 Identities=13% Similarity=0.021 Sum_probs=57.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHH
Q 038673 200 VIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDM 279 (548)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 279 (548)
..++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+...-||...|-++-. .+.|..+++..-+.++
T Consensus 21 ~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp CHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 46777777777766542 22222333456778999999999999999999999988765 5778888888888787
Q ss_pred HHcC
Q 038673 280 VKTE 283 (548)
Q Consensus 280 ~~~g 283 (548)
..+|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 7654
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=69.42 E-value=70 Score=29.46 Aligned_cols=158 Identities=9% Similarity=-0.030 Sum_probs=84.8
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHhhHHHHHHH
Q 038673 222 VVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQL----FGDMVKTETKPNGVTFIGVLTA 297 (548)
Q Consensus 222 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a 297 (548)
...|.++..=|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.+++++......++.-
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345556666777778888887765432 2234445555444443 3333344556555555555544
Q ss_pred HhhcCC----------------ccCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhc--
Q 038673 298 CSHVGL----------------KCYG--VSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIH-- 357 (548)
Q Consensus 298 ~~~~~~----------------~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~-- 357 (548)
+..... .+.| -.-++.....+...|.+.|++.+|..-|---. .-|...+..++.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcC
Confidence 433221 1111 12366677778888888888888887665211 11355555555444333
Q ss_pred -CCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 358 -RNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 358 -~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
|...++-.+. ...+--|.-.|+...|..+++...
T Consensus 181 ~~~~~e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 181 DIEDSTVAEFF--------------SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCCHHHHHHHH--------------HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCCcchHHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4333322111 112223556788888888888664
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=69.03 E-value=34 Score=27.32 Aligned_cols=70 Identities=13% Similarity=0.009 Sum_probs=47.2
Q ss_pred cCHHHHHHHHHHHHHcCCH---HHHHHHHHhCC-CCC-ChhHHH-HHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 310 PSTDHYACMVDLLGRAGCL---EEALKMVEKMP-VEP-NGGVWG-ALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 310 p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~-~~p-~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
|+..+--.+.-++.+..+. .+++.++++.- ..| +..-+- .|--++.+.|+++.|.+..+.+++.+|+|..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 3444444555566666554 45666776652 234 233333 3447899999999999999999999999863
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.77 E-value=40 Score=27.24 Aligned_cols=80 Identities=11% Similarity=0.005 Sum_probs=54.7
Q ss_pred HHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 329 EEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE--LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 329 ~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+.+.+.|...+ .+-|+.-...-+..-... +....+|..+.. +.-..+..|...+..+...|++++|.++++.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556665554 445554444333322222 237888888887 555667789999999999999999999999887
Q ss_pred hCCCcc
Q 038673 406 MTGLKK 411 (548)
Q Consensus 406 ~~g~~~ 411 (548)
+++-.|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 776554
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.44 E-value=15 Score=33.04 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=43.9
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 038673 320 DLLGRAGCLEEALKMVEKM-PVEPN-GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKI 378 (548)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 378 (548)
..+.+.|++++|++....- +-.|. ...-..|+..++..|+++.|.+-++...+++|...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 4566788899888766543 45565 44445566888899999999999999999988754
No 274
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=64.06 E-value=51 Score=25.91 Aligned_cols=68 Identities=13% Similarity=0.017 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHhCC-CCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 038673 312 TDHYACMVDLLGRAGCL---EEALKMVEKMP-VEPN--GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIG 379 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~---~~A~~~~~~m~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 379 (548)
+.+--.+.-++.+..+. .+++.++++.- ..|. ...+-.|--++.+.|+++.|.+..+.+++.+|+|..
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 33333444555555544 45677776652 2342 333444557899999999999999999999999873
No 275
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.24 E-value=28 Score=27.32 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCChHHHHHHHccCCCCC---hhHHHHHHHHHHHCCC--hhHHHHHHHHHHHCCCCCCHh
Q 038673 123 TELIVAYANNGDMESAGGLFNELPLKD---KVAWTAMVTGYVQNAK--PREAIEYFERMQYAGVETDYV 186 (548)
Q Consensus 123 ~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 186 (548)
+.++.-|...|+.++|...++++..|. ......+..++-+.+. .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 456666777777777777777776552 2333444444444432 345677777777776544433
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.24 E-value=54 Score=26.87 Aligned_cols=80 Identities=9% Similarity=0.014 Sum_probs=53.6
Q ss_pred HHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 329 EEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE--LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 329 ~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+.+.+.|...+ .+-|+.-...-|..-...++ ...+|..|.. +.-..+..|...+..+...|++.+|.++++.-.
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455554443 44564444433322222233 6677888877 556667789999999999999999999999888
Q ss_pred hCCCcc
Q 038673 406 MTGLKK 411 (548)
Q Consensus 406 ~~g~~~ 411 (548)
+++-.|
T Consensus 124 ~~~A~P 129 (164)
T 2wvi_A 124 QQKAEP 129 (164)
T ss_dssp HTTCBS
T ss_pred HcCCCc
Confidence 777654
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.80 E-value=84 Score=27.65 Aligned_cols=59 Identities=7% Similarity=0.026 Sum_probs=29.8
Q ss_pred HHHHhcCCCHHHHHHHHhcCC----CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 038673 229 IDMYSKCGSIDDAYRIFVGMK----QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 288 (548)
+...++.|+.+-+..+++... ..|...++.+..+ +..++.....++++.+.+.|..++.
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~ 214 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNV 214 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCC
Confidence 334445667766666665422 1233333444333 3344444445566666666665553
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.15 E-value=1.2e+02 Score=28.96 Aligned_cols=96 Identities=15% Similarity=-0.004 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 038673 258 SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEK 337 (548)
Q Consensus 258 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (548)
-++..|...|++.+|.+++.++.+.=-+.|..++ -.+.|..-+..|...+++.++...+.+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~-------------------llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNL-------------------LVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHH-------------------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh-------------------HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4677888889999998888888764222232222 234577778888888998888888766
Q ss_pred CC-----CCCChhHHHHHH----HHHH-hcCCHHHHHHHHHHHhh
Q 038673 338 MP-----VEPNGGVWGALL----GACQ-IHRNPEIAQIAANHLFE 372 (548)
Q Consensus 338 m~-----~~p~~~~~~~ll----~~~~-~~~~~~~a~~~~~~~~~ 372 (548)
.. +.|++.+-..+- ..+. ..+++..|...|-+..+
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 52 234444433322 2345 68888888877766654
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=58.15 E-value=13 Score=33.32 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=43.4
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 038673 194 ACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ 250 (548)
Q Consensus 194 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 250 (548)
...+.|+++++.+....-++..+. |...-..|+..+|-.|+++.|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~---da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK---DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445678888888888888887754 888888899999999999999887776653
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.82 E-value=95 Score=26.39 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=52.3
Q ss_pred HHHHHHHhcCC--CCChh---hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHH
Q 038673 239 DDAYRIFVGMK--QRNVF---SYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTD 313 (548)
Q Consensus 239 ~~A~~~~~~~~--~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~ 313 (548)
+.+.+.|.... +.|+. .|-..+..+ ..+...++.++|..|...|+--....|
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~Alf---------------------- 117 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLF---------------------- 117 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHH----------------------
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHH----------------------
Confidence 44555555554 24543 454444443 245577999999999998876555443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Q 038673 314 HYACMVDLLGRAGCLEEALKMVEKM 338 (548)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~m 338 (548)
|......+...|++.+|.++|+.-
T Consensus 118 -Ye~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 118 -YEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888899999999988754
No 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=53.75 E-value=26 Score=28.38 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCChHHHHHHHccCCCCC---hhHHHHHHHHHHHCCC--hhHHHHHHHHHHHCCCCCCH
Q 038673 123 TELIVAYANNGDMESAGGLFNELPLKD---KVAWTAMVTGYVQNAK--PREAIEYFERMQYAGVETDY 185 (548)
Q Consensus 123 ~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 185 (548)
+.++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+...|+-+..
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 445666666666666666666665542 2233344444444322 34466677777666654433
No 282
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=53.23 E-value=1.6e+02 Score=28.17 Aligned_cols=335 Identities=13% Similarity=0.132 Sum_probs=151.0
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCChhh--HHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChh--HHHHHHHHHHHcC
Q 038673 27 YILQGHLKDSISLYCSMRREGIGPVSFT--LSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLY--VGNTMIGMYVKCG 102 (548)
Q Consensus 27 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g 102 (548)
-+..|+.+ +++.+.+.|..|+... ..+.+...+..|+.+.++. +++.| ..++.. ...+.+...++.|
T Consensus 21 Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~----Ll~~g-~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 21 ASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY----LLQNK-AKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHH----HHHHT-CCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhCC-CCCCCCCCCCCCHHHHHHHCC
Confidence 34556654 4444555676665332 1233444455677655444 44445 333321 1223444556778
Q ss_pred ChHHHHHHHccCCCCCeeh--HHHHHHHHHhCCChHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 038673 103 FLGCSRKVFDEMPERDVVS--WTELIVAYANNGDMESAGGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQ 177 (548)
Q Consensus 103 ~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 177 (548)
+.+-+.-+++.-..++... -.+.+...+..|+.+-...+++.-... +...++. +...+..|+.+-+ +.+.
T Consensus 92 ~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll 166 (437)
T 1n11_A 92 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVRVA----ELLL 166 (437)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHHH----HHHH
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHHHH----HHHH
Confidence 8887777777644432211 112344455667777777777654322 2222222 3334556665433 3344
Q ss_pred HCCCCCCHhh--HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC---CC
Q 038673 178 YAGVETDYVT--LVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ---RN 252 (548)
Q Consensus 178 ~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~ 252 (548)
+.|..|+... -.+.+...+..|+.+ +.+.+.+.|..|........+.+...++.|+.+-+..+++.-.. .+
T Consensus 167 ~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~ 242 (437)
T 1n11_A 167 ERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 242 (437)
T ss_dssp HTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred hCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 4555444321 111233334455554 33444455544311111112234455667787777777764332 23
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 038673 253 VFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEAL 332 (548)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 332 (548)
...++.|.. .+..|+.+ +++.+.+.|..++... ..|.. .+...++.|+.+-+.
T Consensus 243 ~~g~t~L~~-A~~~g~~~----~v~~Ll~~~~~~~~~~--------------~~g~t--------~L~~A~~~~~~~~~~ 295 (437)
T 1n11_A 243 VQGVTPLHL-AAQEGHAE----MVALLLSKQANGNLGN--------------KSGLT--------PLHLVAQEGHVPVAD 295 (437)
T ss_dssp TTCCCHHHH-HHHTTCHH----HHHHHHTTTCCTTCCC--------------TTCCC--------HHHHHHHHTCHHHHH
T ss_pred CCCCCHHHH-HHHCCCHH----HHHHHHhcCCCCCCCC--------------CCCCC--------HHHHHHHcCCHHHHH
Confidence 233333333 33455543 3334444554444221 01111 122233566666665
Q ss_pred HHHHhCC-C-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 333 KMVEKMP-V-EPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 333 ~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
-+++.-. + ..+...++.|. .....|+.+....+++.-...+..+......| ...+..|+.+ +.+.+.+.|..
T Consensus 296 ~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L-~~A~~~g~~~----iv~~Ll~~ga~ 369 (437)
T 1n11_A 296 VLIKHGVMVDATTRMGYTPLH-VASHYGNIKLVKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTD----IVTLLLKNGAS 369 (437)
T ss_dssp HHHHHTCCTTCCCSSCCCHHH-HHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCC
T ss_pred HHHhCCccCCCCCCCCCCHHH-HHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHCChHH----HHHHHHHCcCC
Confidence 5555421 1 12222233333 33456777766665554332222222112222 2223445543 44445556665
Q ss_pred cC
Q 038673 411 KN 412 (548)
Q Consensus 411 ~~ 412 (548)
++
T Consensus 370 ~~ 371 (437)
T 1n11_A 370 PN 371 (437)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.99 E-value=27 Score=30.06 Aligned_cols=88 Identities=11% Similarity=0.058 Sum_probs=39.9
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhh--HHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChh---H
Q 038673 16 NPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFT--LSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLY---V 90 (548)
Q Consensus 16 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~ 90 (548)
|....+.|..+ ++.|+.+. ++.+.+.|..++... -.+.+...+..|+.+.+ +.+++.| ..++.. .
T Consensus 6 d~~~~~~l~~A-~~~g~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~~-~~~~~~~~~~ 75 (240)
T 3eu9_A 6 DDYSTWDIVKA-TQYGIYER----CRELVEAGYDVRQPDKENVTLLHWAAINNRIDLV----KYYISKG-AIVDQLGGDL 75 (240)
T ss_dssp SCGGGCCHHHH-HHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTT-CCTTCCBTTT
T ss_pred ccccchHHHHH-HHcCChHH----HHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHH----HHHHHcC-CcchhhcCCc
Confidence 33334444443 45666544 344445565543321 11234444555665443 3444454 322211 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHcc
Q 038673 91 GNTMIGMYVKCGFLGCSRKVFDE 113 (548)
Q Consensus 91 ~~~li~~~~~~g~~~~A~~~~~~ 113 (548)
..+.+...+..|+.+-+..+++.
T Consensus 76 ~~t~L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 76 NSTPLHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCChhHHHHHcCCHHHHHHHHHc
Confidence 22334444556777666666554
No 284
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.05 E-value=58 Score=31.64 Aligned_cols=34 Identities=6% Similarity=-0.135 Sum_probs=21.9
Q ss_pred CCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 374 EPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 374 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
.|-.......|+..+.- ..+++.+.+.+|...|-
T Consensus 343 ~~Ys~I~l~~mA~~l~~--s~~~~E~~L~~lI~~g~ 376 (429)
T 4b4t_R 343 ESYKTLSLKSMASAFGV--SVAFLDNDLGKFIPNKQ 376 (429)
T ss_dssp HTCSEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred HHhceeeHHHHHHHhCc--CHHHHHHHHHHHHHcCC
Confidence 45555566667666643 45677788888876654
No 285
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.28 E-value=41 Score=29.55 Aligned_cols=118 Identities=8% Similarity=-0.104 Sum_probs=66.5
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCChh-------hHHHHHHHhh--ccCCcHHHHHHHHHHHHhCC--------C-CC
Q 038673 25 RGYILQGHLKDSISLYCSMRREGIGPVSF-------TLSALFKACT--EVLDVSLGQQIHAQTILLGG--------F-TS 86 (548)
Q Consensus 25 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~a~~--~~~~~~~a~~~~~~~~~~~~--------~-~~ 86 (548)
...++.|+.+....+++.+.+.|..++.. -.+.|..|+. +.|+.+.++.+++.-...+. + ..
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 33467789998888888888877666533 2344544442 56888877777766443210 0 01
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeeh----------------HHHHHHHHHhCCChHHHHHHHc
Q 038673 87 DLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVS----------------WTELIVAYANNGDMESAGGLFN 143 (548)
Q Consensus 87 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----------------~~~li~~~~~~g~~~~A~~~f~ 143 (548)
|..-. +.+...+..|+.+-+.-+++.-..++... -.+.+...+..|+.+-+.-+++
T Consensus 90 d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 90 YYRGQ-TALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp SEESB-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCC-CHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11222 23344456788877777776544332221 2233444456677666666666
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.14 E-value=2.4e+02 Score=28.09 Aligned_cols=173 Identities=10% Similarity=0.029 Sum_probs=82.8
Q ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCCh-hhhHH-------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh--
Q 038673 221 NVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNV-FSYSS-------MILGFAMHGRAHAAIQLFGDMVKTETKPNGVT-- 290 (548)
Q Consensus 221 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~-------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-- 290 (548)
...++|.++..|...+.++.|.++..+..-|.. .+-+- +...++-.+++.+|.+.|...... .+++...
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk-ap~~~~a~g 308 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK-APHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS-CSCSSSCSH
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcchhhhh
Confidence 456667777777777777777777776654422 11111 223345567777777777666543 1222110
Q ss_pred -------HHHHHHHHhhcCC-------ccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 038673 291 -------FIGVLTACSHVGL-------KCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQI 356 (548)
Q Consensus 291 -------~~~ll~a~~~~~~-------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 356 (548)
|..++.-. .|. ...+++.....|..|+.++ +.|++++-...+++-. ..+.+
T Consensus 309 fr~~a~K~lI~V~LL--lG~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~~F~~ 373 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLL--MGDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------QLLLK 373 (523)
T ss_dssp HHHHHHHHHHHHHHH--HTCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------HHHHH
T ss_pred HHHHHHHHHHhHHhh--cCCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------ceecc
Confidence 11111111 121 1222222344577777776 6677766555554432 12333
Q ss_pred cCCHHHHHHHHHHH----hh-cCCC-CchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 038673 357 HRNPEIAQIAANHL----FE-LEPD-KIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLK 410 (548)
Q Consensus 357 ~~~~~~a~~~~~~~----~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 410 (548)
.|.+...+++-..+ +. +... ..-...-++..+. ....++|+.+...|...|.-
T Consensus 374 Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~-L~s~eeaE~iVAkmI~dG~I 432 (523)
T 4b4t_S 374 DDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLN-LDSEQTVEYMVSRAIRDGVI 432 (523)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHH-HHHSSCHHHHHHHHHHHTSS
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhC-CCCHHHHHHHHHHHHHcCCc
Confidence 44444433322222 22 2221 1112222222211 12346799999999888863
No 287
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=45.81 E-value=6.6 Score=23.26 Aligned_cols=13 Identities=46% Similarity=1.237 Sum_probs=9.8
Q ss_pred ccc-ccccccCCCC
Q 038673 535 HHF-QDGKCSCGNY 547 (548)
Q Consensus 535 h~~-~~g~~s~~~~ 547 (548)
|.. ++|.|||+-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 444 6899999976
No 288
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=45.04 E-value=2.7e+02 Score=28.46 Aligned_cols=237 Identities=9% Similarity=-0.079 Sum_probs=133.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHH----HHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHH
Q 038673 164 AKPREAIEYFERMQYAGVETDYVTLVGVIS----ACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSID 239 (548)
Q Consensus 164 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~----~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~ 239 (548)
.+.+.|..+|....+.. ..+......+-. .....+...++...+........ +.....-.+....+.|+++
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ----STSLIERRVRMALGTGDRR 302 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC----CHHHHHHHHHHHHHHTCHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC----ChHHHHHHHHHHHHCCCHH
Confidence 37799999998886543 223332222222 22333424555666665544332 2222334445556789999
Q ss_pred HHHHHHhcCCCCC--hhhhH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc----cCCCCcC-
Q 038673 240 DAYRIFVGMKQRN--VFSYS-SMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK----CYGVSPS- 311 (548)
Q Consensus 240 ~A~~~~~~~~~~~--~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~----~~~~~p~- 311 (548)
.|...|..|.... ..-|. =+..++...|+.++|..+|+.+... .+|=.++.+ .+.|.. .....+.
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~lAa-~~Lg~~~~~~~~~~~~~~ 375 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPMVAA-QRIGEEYELKIDKAPQNV 375 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHHHHH-HHTTCCCCCCCCCCCSCC
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHHHHH-HHcCCCCCCCCCCCChhH
Confidence 9999999998632 22221 2344667889999999999998752 245444433 333431 0011110
Q ss_pred --H---HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---CCchhHHH
Q 038673 312 --T---DHYACMVDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEP---DKIGNYII 383 (548)
Q Consensus 312 --~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p---~~~~~~~~ 383 (548)
. ..-..-+..+...|...+|...+....-..+......+.......|..+.+..........+. .-|..|..
T Consensus 376 ~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~ 455 (618)
T 1qsa_A 376 DSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYND 455 (618)
T ss_dssp CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHH
T ss_pred HhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHH
Confidence 0 011233556778899999988877663234444444444555678888888766654433221 11335666
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 038673 384 LSNIYASAGMWDDVSRVRRLLKMTGLKKN 412 (548)
Q Consensus 384 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 412 (548)
++.-+++.-.++...-.--...|.++.|.
T Consensus 456 ~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 456 LFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 77777777666665544333446666554
No 289
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=43.79 E-value=1.4e+02 Score=25.30 Aligned_cols=53 Identities=8% Similarity=0.048 Sum_probs=29.7
Q ss_pred HHHHHhcCCCHHHHHHHHhcCCCC---ChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMKQR---NVFSYSSMILGFAMHGRAHAAIQLFGDMVK 281 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 281 (548)
.+...++.|+.+-+.-+++.-..+ |..-.+.+ ...+..|+...++++.+.+.+
T Consensus 180 ~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l-~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 180 PLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL-QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 344455667777666666543322 22222222 333456777778888777765
No 290
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=42.55 E-value=3e+02 Score=28.34 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=50.3
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCC--hhHHHHHHHHHH-hc---------------CCHHHHHHHHHHHhh-------c
Q 038673 319 VDLLGRAGCLEEALKMVEKMPVEPN--GGVWGALLGACQ-IH---------------RNPEIAQIAANHLFE-------L 373 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~-~~---------------~~~~~a~~~~~~~~~-------~ 373 (548)
..-+...|++++|..+|.-.. ..| ....+.+++-.. .. +-...|.++.+.... .
T Consensus 450 A~~ae~~G~~~dAi~LY~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~ 528 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAE-EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQI 528 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTS
T ss_pred HHHHHHCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhc
Confidence 345567899999999998887 334 345555553322 21 112355555444322 2
Q ss_pred CCCCchhHHHHHHH-----HHHcCCchHHHHHHHHH
Q 038673 374 EPDKIGNYIILSNI-----YASAGMWDDVSRVRRLL 404 (548)
Q Consensus 374 ~p~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m 404 (548)
.+.+..++..|..+ +...|+|++|.+.++++
T Consensus 529 ~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 529 HVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 23334455555444 48899999999887764
No 291
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=42.49 E-value=63 Score=23.67 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHH
Q 038673 236 GSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQL 275 (548)
Q Consensus 236 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 275 (548)
...+.|.++++.+++++..+|..++.++...|+..-|..+
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHH
Confidence 4678899999999988888999999998877876655443
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.67 E-value=1.2e+02 Score=26.27 Aligned_cols=80 Identities=13% Similarity=0.075 Sum_probs=52.6
Q ss_pred HHHHHHHHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 038673 329 EEALKMVEKMP-VEPNGGVWGALLGACQIHRNPEIAQIAANHLFE--LEPDKIGNYIILSNIYASAGMWDDVSRVRRLLK 405 (548)
Q Consensus 329 ~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 405 (548)
+.+.+.|...+ .+-|+.-...-|..-.. .+....+|..|.. +.-..+..|...+..+...|++.+|.++++.-.
T Consensus 101 Erc~~~F~~~~rYknD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 101 ERCTREFVRNPLYKDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455554443 44554433333322221 2456678888877 555667789999999999999999999999877
Q ss_pred hCCCcc
Q 038673 406 MTGLKK 411 (548)
Q Consensus 406 ~~g~~~ 411 (548)
+++-.|
T Consensus 178 ~~~A~P 183 (223)
T 4aez_C 178 RMKAKP 183 (223)
T ss_dssp HHTCBS
T ss_pred HcCCcc
Confidence 766554
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.26 E-value=1.3e+02 Score=25.52 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=11.4
Q ss_pred HhCCCchHHHHHHHHHHHCCCCC
Q 038673 28 ILQGHLKDSISLYCSMRREGIGP 50 (548)
Q Consensus 28 ~~~g~~~~A~~~~~~m~~~g~~p 50 (548)
++.|+.+.+..+++.+.+.|..+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHcCCHHHHHHHHHHHHhcCCCC
Confidence 44455555555555444444443
No 294
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=39.66 E-value=4e+02 Score=28.87 Aligned_cols=153 Identities=9% Similarity=-0.001 Sum_probs=76.4
Q ss_pred HHHhCCChHHHHHHHccCCC----CC--hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC-------CCCHhhHHHHHHH
Q 038673 128 AYANNGDMESAGGLFNELPL----KD--KVAWTAMVTGYVQNAKPREAIEYFERMQYAGV-------ETDYVTLVGVISA 194 (548)
Q Consensus 128 ~~~~~g~~~~A~~~f~~m~~----~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------~p~~~t~~~ll~~ 194 (548)
|....|+.++++.+++.... .+ +..-..+.-+.+..|..++++.++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45667788888888877654 12 22333444456666766677777766554211 0111111222222
Q ss_pred HHccCC-hhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCC-CChhh--hHHHHHHHHhcCCHH
Q 038673 195 CAQLGV-IKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQ-RNVFS--YSSMILGFAMHGRAH 270 (548)
Q Consensus 195 ~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~--~~~li~~~~~~g~~~ 270 (548)
.+..|. -+++...+..+....-.. ......-+|...|.-.|+-+....++..+.+ .+... .-++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~-~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSAT-SGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHH-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHH-HHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 222332 234455555554432110 0112333445556667777766666665432 12222 222333455678888
Q ss_pred HHHHHHHHHHH
Q 038673 271 AAIQLFGDMVK 281 (548)
Q Consensus 271 ~A~~l~~~m~~ 281 (548)
.+..+.+.+..
T Consensus 542 ~~~~li~~L~~ 552 (963)
T 4ady_A 542 LADDLITKMLA 552 (963)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 87777777765
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.65 E-value=57 Score=26.35 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=27.8
Q ss_pred HHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038673 169 AIEYFERMQYAGVETD-YVTLVGVISACAQLGVIKYANWVCEIAEGSGFGP 218 (548)
Q Consensus 169 A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 218 (548)
+.++|..|...|+--. ..-|......+...|++.+|.+++..-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5666666666554332 2234445555555666666666666666655554
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.56 E-value=1e+02 Score=23.98 Aligned_cols=60 Identities=17% Similarity=0.314 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCCCh---hhhHHHHHHHHhcCC--HHHHHHHHHHHHHcCC
Q 038673 225 GSALIDMYSKCGSIDDAYRIFVGMKQRNV---FSYSSMILGFAMHGR--AHAAIQLFGDMVKTET 284 (548)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~ 284 (548)
...++.=|...|+.++|.+.++++..|.- .....+..++-+.+. .+.+..++..+...|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34566666666777777777777654421 223333344444322 3455566666665554
No 297
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.32 E-value=77 Score=28.45 Aligned_cols=211 Identities=5% Similarity=-0.069 Sum_probs=104.8
Q ss_pred CCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHH
Q 038673 163 NAKPREAIEYFERMQYAGV-ETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDA 241 (548)
Q Consensus 163 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A 241 (548)
..+..+..+++.. .++ ..|..-.+. +...+..|+.+.+..++ +.|..+ +..-..+.+...+..|+.+-+
T Consensus 9 ~~~~~~v~~lL~~---~~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll----~~g~~~--~~~~g~t~L~~A~~~g~~~~v 78 (285)
T 3kea_A 9 TWKSKQLKSFLSS---KDTFKADVHGHSA-SYYAIADNNVRLVCTLL----NAGALK--NLLENEFPLHQAATLEDTKIV 78 (285)
T ss_dssp GCCHHHHHHHHHS---TTTTCCCTTSCCH-HHHHHHTTCHHHHHHHH----HTTGGG--SCCTTCCHHHHHTTSSSCHHH
T ss_pred hcCHHHHHHHHHh---CCCCccCCCCCCH-HHHHHHcCCHHHHHHHH----hCCCCC--CCCCCCCHHHHHHHcCCHHHH
Confidence 3455555555543 232 223333334 44445567776555444 445442 221233455666778888888
Q ss_pred HHHHhcCCC---CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHH
Q 038673 242 YRIFVGMKQ---RNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACM 318 (548)
Q Consensus 242 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~l 318 (548)
..+++.-.. +|...++.|..+ +..|+.+-+ +.+.+.|..|+.... .-+.+.
T Consensus 79 ~~Ll~~ga~~~~~d~~g~t~L~~A-~~~g~~~~v----~~Ll~~ga~~~~~~~---------------------~g~~t~ 132 (285)
T 3kea_A 79 KILLFSGLDDSQFDDKGNTALYYA-VDSGNMQTV----KLFVKKNWRLMFYGK---------------------TGWKTS 132 (285)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHH----HHHHHHCGGGGGCSS---------------------SGGGSH
T ss_pred HHHHHCCCCCCCcCCCCCcHHHHH-HHcCCHHHH----HHHHhcCCCCCccCC---------------------CCCCCH
Confidence 777775433 333344454443 456665433 334444555443210 001122
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 038673 319 VDLLGRAGCLEEALKMVEKMPVEPNGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVS 398 (548)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 398 (548)
+...+..|+.+-+.-+++.-....+...-.+.+......|+.+.+..+++.-...+..+.......+...+..|+.
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~---- 208 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI---- 208 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----
Confidence 3334456777766666665542233312334444556778898888888776654433321111111222334553
Q ss_pred HHHHHHHhCCCccCC
Q 038673 399 RVRRLLKMTGLKKNP 413 (548)
Q Consensus 399 ~~~~~m~~~g~~~~~ 413 (548)
++.+.+.+.|..++.
T Consensus 209 ~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 209 EMLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHHTTSCBCSTT
T ss_pred HHHHHHHHcCCCCCC
Confidence 455566677766543
No 298
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=38.24 E-value=1.7e+02 Score=24.65 Aligned_cols=62 Identities=19% Similarity=0.136 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCCC--hhHHHHHH-----HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 038673 328 LEEALKMVEKMPVEPN--GGVWGALL-----GACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYA 389 (548)
Q Consensus 328 ~~~A~~~~~~m~~~p~--~~~~~~ll-----~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 389 (548)
++.|+.+++.+.-.-| ...-..|+ ..|.+.|.+++|.+++++...-.+.+...-.-|..+-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~ 162 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 162 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 5778888888863323 11222233 56999999999999999988877666544444444333
No 299
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=38.20 E-value=25 Score=25.92 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=38.5
Q ss_pred HhccCCCCCcchHHHHHHHHHh-C-CCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHH
Q 038673 8 VFEQVKYKNPFLWTALIRGYIL-Q-GHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVLDVSLGQQI 74 (548)
Q Consensus 8 ~f~~~~~~~~~~~~~li~~~~~-~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~ 74 (548)
+++.+-+..+.+-.-.=..... + ...+.|.++++.+..+| ..+|..++.++...+....|..+
T Consensus 26 vld~L~~~~vlt~~~~e~I~~~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 26 LWDVLLSRELFRPHMIEDIQRAGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp THHHHHHTTSSCHHHHHHHHTSTTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHHHH
Confidence 4444455555555444333333 2 46788888888888765 25678888888766766555443
No 300
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=37.44 E-value=1.2e+02 Score=26.76 Aligned_cols=127 Identities=9% Similarity=-0.024 Sum_probs=70.2
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-------ChhhHHHHHHHhh--ccCCcHHHHHHHHHHHHhCC--
Q 038673 15 KNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGP-------VSFTLSALFKACT--EVLDVSLGQQIHAQTILLGG-- 83 (548)
Q Consensus 15 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------~~~~~~~ll~a~~--~~~~~~~a~~~~~~~~~~~~-- 83 (548)
+|..-++.|..+ ++.|+.+.+..+++.....+... |..-.+.|..|+. +.|+.+-++.+++.-...+.
T Consensus 9 ~d~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 9 PRLYDRRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp --CCCHHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCcccchHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 344556666554 67789998888888877766433 3344555666654 35788777777766432110
Q ss_pred ------CC-CChhHHHHHHHHHHHcCChHHHHHHHccCCCCCeeh----------------HHHHHHHHHhCCChHHHHH
Q 038673 84 ------FT-SDLYVGNTMIGMYVKCGFLGCSRKVFDEMPERDVVS----------------WTELIVAYANNGDMESAGG 140 (548)
Q Consensus 84 ------~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----------------~~~li~~~~~~g~~~~A~~ 140 (548)
.. .|..-.+. +...+..|+.+-+..+++.-..++... -.+.+...+..|+.+-+.-
T Consensus 88 ~~i~~~~~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTA-LHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HHHTCCCCSTTTTTCCH-HHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred HHhhcccccccCCCCCH-HHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 00 12222233 334456788887777777644432211 1233344455666666666
Q ss_pred HHc
Q 038673 141 LFN 143 (548)
Q Consensus 141 ~f~ 143 (548)
+++
T Consensus 167 Ll~ 169 (273)
T 2pnn_A 167 LLQ 169 (273)
T ss_dssp HHH
T ss_pred HHh
Confidence 666
No 301
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=36.18 E-value=20 Score=25.77 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHHHHHHHHCCcccCCccccccCChHHHhhhhhhhhHHHHHHHhc
Q 038673 436 PNSTEIQQALGDLLDRLQADGYQPNLRSVLYDVSDEEKKRILMTHSEKLALAFGL 490 (548)
Q Consensus 436 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~ 490 (548)
+...++...+++-..+++..|+.||...+-. +...+.++.+...||=
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G~--------eayef~~e~v~~e~g~ 59 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFGR--------EAYNFLSNLLKKEMEE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEECH--------HHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEcH--------HHHHHHHHHHhHhhcc
Confidence 3456788888999999999999999765432 1223345555555654
No 302
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.93 E-value=2e+02 Score=24.33 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=21.3
Q ss_pred HcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 038673 324 RAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEIAQIAANH 369 (548)
Q Consensus 324 ~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 369 (548)
+.|+.+-+..+++.-. ...+...-.+.+......|+.+....+++.
T Consensus 125 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 172 (241)
T 1k1a_A 125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172 (241)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 4566555555554432 111111122333344456777766666554
No 303
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=35.75 E-value=13 Score=25.12 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=17.6
Q ss_pred ceEEEecCCcccccccccccCC
Q 038673 524 REIVVRDNMRFHHFQDGKCSCG 545 (548)
Q Consensus 524 ~~~~~~~~~~~h~~~~g~~s~~ 545 (548)
..|=+.|.+..|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4566789999999999986543
No 304
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=35.07 E-value=2.7e+02 Score=25.61 Aligned_cols=68 Identities=10% Similarity=0.086 Sum_probs=46.8
Q ss_pred CHHHHHHHHH---hCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 038673 327 CLEEALKMVE---KMPVEPN--GGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVR 401 (548)
Q Consensus 327 ~~~~A~~~~~---~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 401 (548)
+.....++-. ..+++|. ..+..+-++.+.+++++..|..+.++++++.|... ..++|.+++
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil 250 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIK 250 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHH
Confidence 3344444433 3346665 55677778889999999999999999999998533 234577776
Q ss_pred HHHHhCC
Q 038673 402 RLLKMTG 408 (548)
Q Consensus 402 ~~m~~~g 408 (548)
..-.+.+
T Consensus 251 ~~ce~~~ 257 (325)
T 3mv2_A 251 NKADSMA 257 (325)
T ss_dssp HHHHTSC
T ss_pred HHHhcCC
Confidence 6665443
No 305
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.02 E-value=2.7e+02 Score=30.33 Aligned_cols=33 Identities=12% Similarity=-0.278 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCCc
Q 038673 346 VWGALLGACQIHRNPEIAQIAANHLFE-LEPDKI 378 (548)
Q Consensus 346 ~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~p~~~ 378 (548)
-|..++..+.+++-++.+.++.+.+++ ..++++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 456666677777777777777777776 444443
No 306
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=33.90 E-value=1.3e+02 Score=21.70 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHH
Q 038673 205 NWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAI 273 (548)
Q Consensus 205 ~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 273 (548)
..++..+.+.|+- +..-+..+.. .....+.|.++++.+.+++...|..++.++...+...-|.
T Consensus 25 ~~lld~L~~~~vl---t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~ 87 (94)
T 2p1h_A 25 SYIMDHMISDGFL---TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAA 87 (94)
T ss_dssp HHHHHHHHHHTSS---CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHCCCC---CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHH
Confidence 3455556655554 3333332222 3566788888888888888888888888888877654443
No 307
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.39 E-value=2.6e+02 Score=26.62 Aligned_cols=304 Identities=11% Similarity=0.085 Sum_probs=143.8
Q ss_pred HHHhhccCCcHHHHHHHHHHHHhCCCCCChh--HHHHHHHHHHHcCChHHHHHHHccCCCCC---eehHHHHHHHHHhCC
Q 038673 59 FKACTEVLDVSLGQQIHAQTILLGGFTSDLY--VGNTMIGMYVKCGFLGCSRKVFDEMPERD---VVSWTELIVAYANNG 133 (548)
Q Consensus 59 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g 133 (548)
|...+..|+++.++.+ ++.| ..++.. ...+.+...+..|+.+-+.-+++.-...+ ..-+ +.+...+..|
T Consensus 18 L~~Aa~~g~~~~v~~L----l~~g-~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g 91 (437)
T 1n11_A 18 LHVASFMGHLPIVKNL----LQRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIG 91 (437)
T ss_dssp HHHHHHHTCHHHHHHH----HHTT-CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHH----HHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCC
Confidence 4444566777655544 4455 544432 12234455567788888888877544322 1112 2344455677
Q ss_pred ChHHHHHHHccCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHccCChhHHHHH
Q 038673 134 DMESAGGLFNELPLK---DKVAWTAMVTGYVQNAKPREAIEYFERMQYAGVETD---YVTLVGVISACAQLGVIKYANWV 207 (548)
Q Consensus 134 ~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~ 207 (548)
+.+-+.-+++.-..+ +...++.+ ...+..|+.+-+..+++ .+..++ ....+ .+...+..|+.+-+.
T Consensus 92 ~~~~v~~Ll~~ga~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~-- 163 (437)
T 1n11_A 92 HTNMVKLLLENNANPNLATTAGHTPL-HIAAREGHVETVLALLE----KEASQACMTKKGFT-PLHVAAKYGKVRVAE-- 163 (437)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCC-HHHHHHHTTCHHHHH--
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCC-HHHHHHHcCCHHHHH--
Confidence 777777776654332 22223333 33345566655544443 333222 11122 233344556665443
Q ss_pred HHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcCCCCC---hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 038673 208 CEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGMKQRN---VFSYSSMILGFAMHGRAHAAIQLFGDMVKTET 284 (548)
Q Consensus 208 ~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 284 (548)
.+.+.|..|........+.+...+..|+.+-+..+++.-..++ ...++.+. ..+..|+.+ +++.+.+.|.
T Consensus 164 --~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~ 236 (437)
T 1n11_A 164 --LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH-IAAKQNQVE----VARSLLQYGG 236 (437)
T ss_dssp --HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHH-HHHHTTCHH----HHHHHHHTTC
T ss_pred --HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHH-HHHHcCCHH----HHHHHHHcCC
Confidence 4445554431111111223445566778777776666544332 22233333 334566654 3344445555
Q ss_pred CCCHhhHHHHHHHHhhcCCccCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCCHHH
Q 038673 285 KPNGVTFIGVLTACSHVGLKCYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMP--VEPNGGVWGALLGACQIHRNPEI 362 (548)
Q Consensus 285 ~p~~~t~~~ll~a~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~ 362 (548)
.++... ..|.. .+...++.|+.+-+.-+++.-. ...+...++.|. .....|+.+.
T Consensus 237 ~~~~~~--------------~~g~t--------~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~-~A~~~~~~~~ 293 (437)
T 1n11_A 237 SANAES--------------VQGVT--------PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH-LVAQEGHVPV 293 (437)
T ss_dssp CTTCCC--------------TTCCC--------HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHH-HHHHHTCHHH
T ss_pred CCCCCC--------------CCCCC--------HHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHH-HHHHcCCHHH
Confidence 444321 01111 1223345677766666655432 112222233333 3446678887
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 038673 363 AQIAANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGLKK 411 (548)
Q Consensus 363 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 411 (548)
...+.+.-...+..+......| ...+..|+.+-+. .+.+.|..+
T Consensus 294 ~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~----~Ll~~gad~ 337 (437)
T 1n11_A 294 ADVLIKHGVMVDATTRMGYTPL-HVASHYGNIKLVK----FLLQHQADV 337 (437)
T ss_dssp HHHHHHHTCCTTCCCSSCCCHH-HHHHHSSCSHHHH----HHHHTTCCT
T ss_pred HHHHHhCCccCCCCCCCCCCHH-HHHHHcCcHHHHH----HHHhcCCCC
Confidence 7777665444433332222222 2334567765443 444555543
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.27 E-value=88 Score=25.22 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCCC---hhhhHHHHHHHHhcCC--HHHHHHHHHHHHHcCC
Q 038673 225 GSALIDMYSKCGSIDDAYRIFVGMKQRN---VFSYSSMILGFAMHGR--AHAAIQLFGDMVKTET 284 (548)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~ 284 (548)
...++.=|...|+.++|.+.++++..|. .....++..++-+.++ .+.+..++..+...|+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4556666777777777777777776542 1233334444444322 3455666666666554
No 309
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.26 E-value=1.9e+02 Score=25.24 Aligned_cols=88 Identities=9% Similarity=0.026 Sum_probs=54.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-----CCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 038673 318 MVDLLGRAGCLEEALKMVEKMP-----VEP----NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNYIILSNIY 388 (548)
Q Consensus 318 li~~~~~~g~~~~A~~~~~~m~-----~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 388 (548)
-++.+....++++|.+++++.. .++ +.......+..-.....-..+..+.+.+.. ...+......+..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 4678888999999999998763 222 112223333333333333444455444422 33455667777889
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 038673 389 ASAGMWDDVSRVRRLLKMT 407 (548)
Q Consensus 389 ~~~g~~~~a~~~~~~m~~~ 407 (548)
.+.|+-++|.++|=+.+..
T Consensus 102 ~rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHHHH
Confidence 9999999999988666543
No 310
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.05 E-value=1.7e+02 Score=25.62 Aligned_cols=88 Identities=9% Similarity=0.093 Sum_probs=48.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHC--CCCC----ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 038673 22 ALIRGYILQGHLKDSISLYCSMRRE--GIGP----VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMI 95 (548)
Q Consensus 22 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 95 (548)
--+..+....++++|++++++.... +.++ +.......++.-.....-..+..+.+.+ . ..++.......+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~---~~~~~~~~r~~v 98 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L---SSNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H---TCSSHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H---hcCCHHHHHHHH
Confidence 4567888899999999998877652 2332 1122233333322222223333333333 1 133445555566
Q ss_pred HHHHHcCChHHHHHHHcc
Q 038673 96 GMYVKCGFLGCSRKVFDE 113 (548)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~ 113 (548)
..+.+.|+.+.|.++|-+
T Consensus 99 ~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHH
Confidence 777777887777777644
No 311
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=30.99 E-value=9.8 Score=19.42 Aligned_cols=13 Identities=54% Similarity=1.518 Sum_probs=9.0
Q ss_pred ccccccc--cCCCCC
Q 038673 536 HFQDGKC--SCGNYW 548 (548)
Q Consensus 536 ~~~~g~~--s~~~~w 548 (548)
.|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5777777 566666
No 312
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.71 E-value=1e+02 Score=25.19 Aligned_cols=50 Identities=6% Similarity=0.108 Sum_probs=20.8
Q ss_pred HHHHHHHHHHCCCCCCH-hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038673 169 AIEYFERMQYAGVETDY-VTLVGVISACAQLGVIKYANWVCEIAEGSGFGP 218 (548)
Q Consensus 169 A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 218 (548)
+..+|..|...|+--.. .-|......+-..|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 44444444444433221 223333333444444444444444444444443
No 313
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=30.19 E-value=79 Score=22.04 Aligned_cols=39 Identities=5% Similarity=-0.003 Sum_probs=25.8
Q ss_pred HHHhccCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 038673 6 RLVFEQVK--YKNPFLWTALIRGYILQGHLKDSISLYCSMR 44 (548)
Q Consensus 6 ~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 44 (548)
..+++++| .|++.+|+-+...+-+..-..+++.+.+++.
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45677777 4788888877776555555566666655543
No 314
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=30.08 E-value=1.1e+02 Score=26.03 Aligned_cols=148 Identities=8% Similarity=-0.032 Sum_probs=67.6
Q ss_pred HHHHhcCCCHHHHHHHHhcCC----CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCc
Q 038673 229 IDMYSKCGSIDDAYRIFVGMK----QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLK 304 (548)
Q Consensus 229 i~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 304 (548)
+...+..|+.+-+..+++.-. .++...++.+..+ +..|+.+ +++.+.+.|..++....
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~~~~Ll~~g~~~~~~~~------------- 142 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA-TEYKHVD----LVKLLLSKGSDINIRDN------------- 142 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHH-HHTTCHH----HHHHHHHTTCCTTCCCT-------------
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCccCC-------------
Confidence 444456677777766666531 1233333444333 3455543 44555556665553210
Q ss_pred cCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 038673 305 CYGVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVEP---NGGVWGALLGACQIHRNPEIAQIAANHLFELEPDKIGNY 381 (548)
Q Consensus 305 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 381 (548)
.|. + .+...++.|+.+-+.-+++.-. .+ |..-. +.+......|+.+....+++.-......+....
T Consensus 143 -~g~--t------~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~ 211 (237)
T 3b7b_A 143 -EEN--I------CLHWAAFSGCVDIAEILLAAKC-DLHAVNIHGD-SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE 211 (237)
T ss_dssp -TSC--C------HHHHHHHHCCHHHHHHHHTTTC-CTTCCCTTCC-CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred -CCC--C------HHHHHHHCCCHHHHHHHHHcCC-CCCCcCCCCC-CHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCC
Confidence 111 1 1222334566665555554322 22 22222 233444556777766555544332222221111
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 038673 382 IILSNIYASAGMWDDVSRVRRLLKM 406 (548)
Q Consensus 382 ~~l~~~~~~~g~~~~a~~~~~~m~~ 406 (548)
.-+......|+...+.++.+.+.+
T Consensus 212 -t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 212 -TPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp -CHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 112233456667777777776654
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.55 E-value=1.9e+02 Score=23.66 Aligned_cols=77 Identities=13% Similarity=-0.074 Sum_probs=34.2
Q ss_pred HhCCCchHHHHHHHHHHHCCCCC---ChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhH--HHHHHHHHHHcC
Q 038673 28 ILQGHLKDSISLYCSMRREGIGP---VSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYV--GNTMIGMYVKCG 102 (548)
Q Consensus 28 ~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g 102 (548)
+..|+.+....++..- +..+ |..-.+.|..| +..|+.+ +.+.+++.| ..++... ..+.+...+..|
T Consensus 13 ~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT---TYQVDEVDTEGNTPLNIA-VHNNDIE----IAKALIDRG-ADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHTTCHHHHHHHHTCT---TCCTTCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred HHhccHHHHHHHHHcC---CCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcC-CCCCCCCCCCCCHHHHHHHcC
Confidence 4566666655554321 1122 22223333333 3445544 334444555 4443221 112233344567
Q ss_pred ChHHHHHHHcc
Q 038673 103 FLGCSRKVFDE 113 (548)
Q Consensus 103 ~~~~A~~~~~~ 113 (548)
+.+-+..+++.
T Consensus 84 ~~~~~~~Ll~~ 94 (201)
T 3hra_A 84 RTEILAYMLKH 94 (201)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 77666666643
No 316
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.72 E-value=1.2e+02 Score=28.26 Aligned_cols=25 Identities=12% Similarity=0.204 Sum_probs=13.8
Q ss_pred HHHHHHHHcCChHHHHHHHccCCCC
Q 038673 93 TMIGMYVKCGFLGCSRKVFDEMPER 117 (548)
Q Consensus 93 ~li~~~~~~g~~~~A~~~~~~m~~~ 117 (548)
.++.=|...|+.++|...++++..|
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 4455555555666666655555543
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.54 E-value=1.3e+02 Score=23.76 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=30.2
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCC
Q 038673 175 RMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGS 237 (548)
Q Consensus 175 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~ 237 (548)
.|.+.|++++..-. .++..+...+..-.|.++++.+.+.+.. .+..|...-++.+...|-
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~--is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPN--MSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTT--CCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCC--CChhhHHHHHHHHHHCCC
Confidence 34555665554332 2333333344455566666666665544 344444444555555554
No 318
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.89 E-value=3.5e+02 Score=24.67 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCCCh---hhhHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCC
Q 038673 225 GSALIDMYSKCGSIDDAYRIFVGMKQRNV---FSYSSMILGFAMHGR--AHAAIQLFGDMVKTETKPN 287 (548)
Q Consensus 225 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 287 (548)
...++.=|...|+.++|.+.++++..|.- ....++..++-+.++ .+....++..+.+.|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 45677888888999999999988876522 334444444444333 3456677888777665433
No 319
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.85 E-value=1.8e+02 Score=25.86 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=7.2
Q ss_pred HHcCChHHHHHHHcc
Q 038673 99 VKCGFLGCSRKVFDE 113 (548)
Q Consensus 99 ~~~g~~~~A~~~~~~ 113 (548)
+..|+.+-+.-+++.
T Consensus 103 ~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 103 VDSGNMQTVKLFVKK 117 (285)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 344555555444443
No 320
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=26.89 E-value=3.1e+02 Score=25.12 Aligned_cols=140 Identities=13% Similarity=0.122 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHC-C----CCCChhhHHHH---HHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHH
Q 038673 21 TALIRGYILQGHLKDSISLYCSMRRE-G----IGPVSFTLSAL---FKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGN 92 (548)
Q Consensus 21 ~~li~~~~~~g~~~~A~~~~~~m~~~-g----~~p~~~~~~~l---l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (548)
|.++..+.-.-.-++|..+|..+... + ..|+....... +..+.+..+ -+++..+.+.| +.|..++..
T Consensus 153 ~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~-i~~~~~~~~ 227 (331)
T 3qye_A 153 SFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHE-IGPSLYAAP 227 (331)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTT-CCGGGTSHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcC-CChHHHHHH
Confidence 33333333333456788888777643 2 23443322221 122222112 35667777777 888888888
Q ss_pred HHHHHHHHcCChHHHHHHHccCCC--CCeehHHH--HHH----HHHhCCChHHHHHHHcc-CCCCChhHHHHHHHHHHHC
Q 038673 93 TMIGMYVKCGFLGCSRKVFDEMPE--RDVVSWTE--LIV----AYANNGDMESAGGLFNE-LPLKDKVAWTAMVTGYVQN 163 (548)
Q Consensus 93 ~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~--li~----~~~~~g~~~~A~~~f~~-m~~~~~~~~~~li~~~~~~ 163 (548)
-++..+++.=.++.+.+++|.+.. +....+-+ ++. ...+..++++....+.. ++..+......++.-....
T Consensus 228 W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 228 WFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhC
Confidence 888888877778888888887653 22222211 221 12344688888888887 4444555556666544444
Q ss_pred CC
Q 038673 164 AK 165 (548)
Q Consensus 164 g~ 165 (548)
.-
T Consensus 308 ~~ 309 (331)
T 3qye_A 308 DI 309 (331)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 321
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.64 E-value=2.6e+02 Score=25.74 Aligned_cols=56 Identities=7% Similarity=-0.110 Sum_probs=30.6
Q ss_pred HHHHHhcCCCHHHHHHHHhcCC--------CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 038673 228 LIDMYSKCGSIDDAYRIFVGMK--------QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNG 288 (548)
Q Consensus 228 li~~y~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 288 (548)
.+...+..|+.+-+..+++.-. ..|..-++.|.. .+..|+.+ +.+.+++.|..++.
T Consensus 176 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~----~v~~Ll~~gad~~~ 239 (364)
T 3ljn_A 176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW-AILINWED----VAMRFVEMGIDVNM 239 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH-HHTTTCHH----HHHHHHTTTCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHH-HHHcCCHH----HHHHHHHcCCCCCC
Confidence 3444556788887777776532 223333444443 34556654 44455566766654
No 322
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=26.44 E-value=4.9e+02 Score=25.88 Aligned_cols=68 Identities=10% Similarity=-0.040 Sum_probs=42.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHH-----HHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 038673 342 PNGGVWGALLGACQIHRNPEIAQI-----AANHLFELEPDKIGNYIILSNIYASAGMWDDVSRVRRLLKMTGL 409 (548)
Q Consensus 342 p~~~~~~~ll~~~~~~~~~~~a~~-----~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 409 (548)
.|......|..-+..+|..++-.+ +...+.+..|++......|-..|.+.|++-+|.+++-.+...+.
T Consensus 176 ~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~ 248 (525)
T 3i5p_A 176 NDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSNF 248 (525)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSS
T ss_pred ChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCCC
Confidence 344444445566667766554432 12222334566676778888899999999999999999987743
No 323
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.40 E-value=77 Score=27.46 Aligned_cols=45 Identities=7% Similarity=0.077 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCHHHHHHHHhcC
Q 038673 203 YANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSIDDAYRIFVGM 248 (548)
Q Consensus 203 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 248 (548)
....+|..|...|+.- .-...|......+...|++.+|..+|+.-
T Consensus 132 ~p~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQ-ESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp CHHHHHHHHHHTTCST-TBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444444444432 23344444444444445555554444443
No 324
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.07 E-value=1.1e+02 Score=27.96 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCCCC---hhHHHHHHHHHHHCCC--hhHHHHHHHHHHHCCCCCCH
Q 038673 122 WTELIVAYANNGDMESAGGLFNELPLKD---KVAWTAMVTGYVQNAK--PREAIEYFERMQYAGVETDY 185 (548)
Q Consensus 122 ~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 185 (548)
.+.++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 3456777777788888888877776652 2233344444443322 23456667777666644433
No 325
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.82 E-value=5.5e+02 Score=27.84 Aligned_cols=50 Identities=8% Similarity=-0.065 Sum_probs=34.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCC--CCChHhHHHHHHHHHhcCC
Q 038673 187 TLVGVISACAQLGVIKYANWVCEIAEGSGFG--PINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 187 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~~~li~~y~~~g 236 (548)
-|..++..+-+.+.++.+.++-+.+++.--. |......++.+..+++..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5677888888888888888888888764321 1122347777877776554
No 326
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.76 E-value=1.3e+02 Score=29.82 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCh------hHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038673 312 TDHYACMVDLLGRAGCLEEALKMVEKMPVEPNG------GVWGALL-GACQIHRNPEIAQIAANHLFELEPDK 377 (548)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~------~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~p~~ 377 (548)
...+|.++..|...+.++.|..++.+..+..+. ..|.-.+ ......+++.+|.+.+..+...-|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 456889999999999999999999988632221 2333222 45677889999999999888866654
No 327
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.22 E-value=2.8e+02 Score=22.57 Aligned_cols=153 Identities=10% Similarity=0.005 Sum_probs=75.7
Q ss_pred HHhcCCCHHHHHHHHhcCC----CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhhcCCccC
Q 038673 231 MYSKCGSIDDAYRIFVGMK----QRNVFSYSSMILGFAMHGRAHAAIQLFGDMVKTETKPNGVTFIGVLTACSHVGLKCY 306 (548)
Q Consensus 231 ~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 306 (548)
..+..|+.+....++..-. ..|...++.|..+ +..|+. ++++.+.+.|..|+.... .
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~~~~--------------~ 71 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGADINLQNS--------------I 71 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTTCCCT--------------T
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCCCCCC--------------C
Confidence 3455677777777776544 2333344444443 345654 345555566766654320 1
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHH-hhcCCCCchhHH
Q 038673 307 GVSPSTDHYACMVDLLGRAGCLEEALKMVEKMPVE---PNGGVWGALLGACQIHRNPEIAQIAANHL-FELEPDKIGNYI 382 (548)
Q Consensus 307 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~p~~~~~~~ 382 (548)
|.. + +...+..|+.+-+..+++.-... ++....+. +......|+.+....+++.- ...+..+.....
T Consensus 72 g~t--~------l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t 142 (201)
T 3hra_A 72 SDS--P------YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT 142 (201)
T ss_dssp SCC--H------HHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCC
T ss_pred CCC--H------HHHHHHcCCHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCC
Confidence 111 1 22334567777777777555322 22222222 33344567777777666654 222222222222
Q ss_pred HHHHHHHHcCC-chHHHHHHHHHHhCCCccC
Q 038673 383 ILSNIYASAGM-WDDVSRVRRLLKMTGLKKN 412 (548)
Q Consensus 383 ~l~~~~~~~g~-~~~a~~~~~~m~~~g~~~~ 412 (548)
.|..+ +..|+ ...-.++.+.+.+.|..++
T Consensus 143 ~L~~A-~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 143 ALIEA-VGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHH-HHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHH-HHhccchhhHHHHHHHHHHCCCCCC
Confidence 23222 23444 3333566777777776543
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.21 E-value=1.3e+02 Score=23.75 Aligned_cols=62 Identities=6% Similarity=0.040 Sum_probs=37.2
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCh
Q 038673 41 CSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFL 104 (548)
Q Consensus 41 ~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 104 (548)
+.+.+.|+.++..- ..++..+...+..-.|.++++.+.+.+ ...+..|----++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKF-PNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGC-TTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCChhhHHHHHHHHHHCCCE
Confidence 34566777666543 234444444455567788888887766 455555555556667777754
No 329
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.17 E-value=1.5e+02 Score=23.46 Aligned_cols=35 Identities=6% Similarity=0.003 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 038673 68 VSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGF 103 (548)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 103 (548)
.-.|.++++.+.+.+ ...+..|--.-++.+...|-
T Consensus 33 h~ta~ei~~~l~~~~-~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKTA-SGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHCCc
Confidence 345556666555544 33344433333444555553
No 330
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=24.15 E-value=3.6e+02 Score=23.55 Aligned_cols=241 Identities=10% Similarity=-0.036 Sum_probs=0.0
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC-CcHHHHHHHHHHHH--hCC
Q 038673 7 LVFEQVKYKNPFLWTALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVL-DVSLGQQIHAQTIL--LGG 83 (548)
Q Consensus 7 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~-~~~~a~~~~~~~~~--~~~ 83 (548)
.++..+..+|...-...+.++.+.| ...++..+..+.. .|+...-...+.++...+ .......+...+.+ ..
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~- 101 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRG-GQDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN- 101 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccC-CchHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc-
Q ss_pred CCCChhHHHHHHHHHHHcC------ChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHHHHHHccCCCCChhHHHHHH
Q 038673 84 FTSDLYVGNTMIGMYVKCG------FLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESAGGLFNELPLKDKVAWTAMV 157 (548)
Q Consensus 84 ~~~~~~~~~~li~~~~~~g------~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 157 (548)
.++..+....+.++.+.| .......+...+..++...-...+.++...|+.+....+...+..++...-...+
T Consensus 102 -d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~ 180 (280)
T 1oyz_A 102 -DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAA 180 (280)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHH
Q ss_pred HHHHHCC-ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCC
Q 038673 158 TGYVQNA-KPREAIEYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCG 236 (548)
Q Consensus 158 ~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g 236 (548)
.+..+.| ...++...+..+.. .+|...-...+.++.+.|+.+....+...+....+.
T Consensus 181 ~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~vr------------------- 238 (280)
T 1oyz_A 181 FAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVY------------------- 238 (280)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSSCC-------------------
T ss_pred HHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCccHH-------------------
Q ss_pred CHHHHHHHHhcCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHH
Q 038673 237 SIDDAYRIFVGMKQRNVFSYSSMILGFAMHGRAHAAIQLFGDM 279 (548)
Q Consensus 237 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 279 (548)
..|...+..+..+ .....+........+.+-....++.+
T Consensus 239 --~~a~~aL~~i~~~--~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 239 --DDIIEAAGELGDK--TLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp --HHHHHHHHHHCCG--GGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred --HHHHHHHHhcCch--hhhHHHHHHHhcCCCcHHHHHHHHHh
No 331
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.00 E-value=2.1e+02 Score=22.77 Aligned_cols=61 Identities=10% Similarity=0.066 Sum_probs=31.0
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHHhcCCCH
Q 038673 175 RMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMYSKCGSI 238 (548)
Q Consensus 175 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y~~~g~~ 238 (548)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+.. .+..|....++.+...|-+
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~--is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKN--TSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTT--CCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCC--CCHhhHHHHHHHHHHCCcE
Confidence 34556665544332 2344444444556667777777666544 3444444455556655543
No 332
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=23.89 E-value=23 Score=21.15 Aligned_cols=13 Identities=31% Similarity=0.810 Sum_probs=10.3
Q ss_pred cccccCCCcchhh
Q 038673 504 NLRICEDCHLFMC 516 (548)
Q Consensus 504 ~l~~~~~~~~~~~ 516 (548)
+.|+|.+|+.-+.
T Consensus 16 ~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 16 QYRVCEKCGKPLA 28 (44)
T ss_dssp CEEECTTTCCEEE
T ss_pred cchhhcccCCcch
Confidence 6899999986543
No 333
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.68 E-value=1.3e+02 Score=23.26 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC
Q 038673 22 ALIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTEVL 66 (548)
Q Consensus 22 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~ 66 (548)
.++..+...+.+-.|.++++.+.+.+...+..|....|+.+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 455555556666677777777776654455555555555555444
No 334
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.65 E-value=3e+02 Score=23.25 Aligned_cols=46 Identities=13% Similarity=0.312 Sum_probs=30.0
Q ss_pred HHHHHHHHH---HCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 038673 153 WTAMVTGYV---QNAKPREAIEYFERMQYAGVETDYVTLVGVISACAQLG 199 (548)
Q Consensus 153 ~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 199 (548)
.-.+|+++. +-.+.+.|+-.+-+|.+.| .|....=..++.+.-.-|
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 334555554 4588999999999999998 665544445555554444
No 335
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.72 E-value=3.3e+02 Score=25.19 Aligned_cols=62 Identities=16% Similarity=0.144 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCCCC---hhHHHHHHHHHHHCC-ChhHHHHHHHHHHHCCCCC
Q 038673 122 WTELIVAYANNGDMESAGGLFNELPLKD---KVAWTAMVTGYVQNA-KPREAIEYFERMQYAGVET 183 (548)
Q Consensus 122 ~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p 183 (548)
...++.-|...|+.++|...++++..|. ......+..++-+.. .-+.+..++..+.+.|+-+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 4568888999999999999999998764 222333333332221 2344667777777766443
No 336
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.48 E-value=3e+02 Score=23.03 Aligned_cols=13 Identities=23% Similarity=0.092 Sum_probs=5.4
Q ss_pred HHCCChhHHHHHH
Q 038673 161 VQNAKPREAIEYF 173 (548)
Q Consensus 161 ~~~g~~~~A~~l~ 173 (548)
++.|+.+....++
T Consensus 14 ~~~g~~~~v~~ll 26 (231)
T 3aji_A 14 AYSGKLDELKERI 26 (231)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHH
Confidence 3344444444333
No 337
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.22 E-value=1.4e+02 Score=22.76 Aligned_cols=45 Identities=4% Similarity=-0.197 Sum_probs=30.4
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 038673 171 EYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSG 215 (548)
Q Consensus 171 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 215 (548)
-+|+.+....+.|+...-..-+..+...++++.|.++|-.+....
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~~ 91 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVDH 91 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCc
Confidence 355666666676665544445555677789999999998877643
No 338
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.11 E-value=1e+02 Score=25.11 Aligned_cols=70 Identities=6% Similarity=0.031 Sum_probs=47.5
Q ss_pred chHHHHHHHH-HHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHh--CCCCCChhHHHHHHHHHHHcCCh
Q 038673 33 LKDSISLYCS-MRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILL--GGFTSDLYVGNTMIGMYVKCGFL 104 (548)
Q Consensus 33 ~~~A~~~~~~-m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~ 104 (548)
.+.+++-+.+ +.+.|++++.. =..++..+...+..-.|.++++.+.+. + ...+..|--.-++.+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~-~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPD-LNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGG-GCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHCCCE
Confidence 3455555544 45578887654 455667777777788899999999887 6 556666555556778888854
No 339
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.02 E-value=1.3e+02 Score=24.10 Aligned_cols=62 Identities=8% Similarity=0.055 Sum_probs=39.1
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCh
Q 038673 41 CSMRREGIGPVSFTLSALFKACTEVLDVSLGQQIHAQTILLGGFTSDLYVGNTMIGMYVKCGFL 104 (548)
Q Consensus 41 ~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 104 (548)
+.+.+.|+.++..- ..++..+...+..-.|.++++.+.+.+ ...+..|----++.+...|-+
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKD-KNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHS-TTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCcE
Confidence 44666777765443 344555555556778889999888876 555666555566777777754
No 340
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.00 E-value=1.2e+02 Score=23.90 Aligned_cols=42 Identities=7% Similarity=0.028 Sum_probs=19.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 038673 23 LIRGYILQGHLKDSISLYCSMRREGIGPVSFTLSALFKACTE 64 (548)
Q Consensus 23 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 64 (548)
++..+...+.+-.|.++++.+.+.+...+..|....|+.+..
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e 60 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD 60 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 344444444455555555555555444444444444444333
No 341
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.68 E-value=2.4e+02 Score=20.14 Aligned_cols=38 Identities=13% Similarity=0.062 Sum_probs=21.2
Q ss_pred cCChHHHHHHHccCCCCCeehHHHHHHHHHhCCChHHH
Q 038673 101 CGFLGCSRKVFDEMPERDVVSWTELIVAYANNGDMESA 138 (548)
Q Consensus 101 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 138 (548)
....+.|.++++.++.+...+|..++.++.+.+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 34555666666666555555666666665555544333
No 342
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.57 E-value=4.9e+02 Score=23.75 Aligned_cols=94 Identities=6% Similarity=0.032 Sum_probs=63.2
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCChHhHHHHHHHHH----hcCCCHHHHHHHHh
Q 038673 171 EYFERMQYAGVETDYVTLVGVISACAQLGVIKYANWVCEIAEGSGFGPINNVVVGSALIDMY----SKCGSIDDAYRIFV 246 (548)
Q Consensus 171 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~y----~~~g~~~~A~~~~~ 246 (548)
++++.+.+.|+.|...++..++..+++.=.++.+..+++.....|.. .-..+..+++..+ .++.+.++..+.+.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~--~l~~valaiL~~~~~~ll~~~~~~~il~~l~ 286 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE--VIFKVALSLLGSHKPLILQHENLETIVDFIK 286 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 45666777889998888888888888877889999999998887755 3333444444332 34567888888887
Q ss_pred c-CCCCChhhhHHHHHHHHhc
Q 038673 247 G-MKQRNVFSYSSMILGFAMH 266 (548)
Q Consensus 247 ~-~~~~~~~~~~~li~~~~~~ 266 (548)
. .+..+......++.--...
T Consensus 287 ~~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 287 STLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp HTTTCCCHHHHHHHHHHHHHC
T ss_pred hhCCCCCHHHHHHHHHHHHhC
Confidence 7 4444444455555433333
Done!