BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038674
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 83 EKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE 142
+ N D++++ IVT TTVGYGD+VP + + ++LA + + G+A +G+I ++
Sbjct: 39 PEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRC 98
Query: 143 KQQ 145
K+
Sbjct: 99 KKP 101
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 186 FILLVLIIA-GIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
F+LLV+II +VF+ E + DAL+ T TT+GYGD+ T GR A +L G
Sbjct: 23 FVLLVIIIPVPMVFIEP-EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFG 81
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
F+L +L +I+G +F S VE L+ +DALY T+TT+GYGD S T G+ F + +I G
Sbjct: 11 FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIG 70
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D++YF +VT+TTVGYGD P + K+ +Y+F G+ LV
Sbjct: 34 IDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
F+L +L +I+G +F S VE L+ +DALY T+TT+GYG+ S T G+ F + +I G
Sbjct: 11 FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIG 70
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D++YF +VT+TTVGYG+ P + K+ +Y+F G+ LV
Sbjct: 34 IDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGLV 74
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
F+L +L +I+G +F S VE L+ +DALY T+TT+GYG+ S T G+ F + +I G
Sbjct: 11 FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIG 70
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D++YF +VT+TTVGYG+ P + K+ +Y+F G+ LV
Sbjct: 34 IDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGLV 74
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
F+L +L +I+G +F S VE L+ +DALY T+TT+G+GD S T G+ F + +I G
Sbjct: 11 FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIG 70
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D++YF +VT+TTVG+GD P + K+ +Y+F G+ LV
Sbjct: 34 IDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGLV 74
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
F+L +L +I+G +F S VE L+ +DAL+ T+TT+GYGD S T G+ F + +I G
Sbjct: 11 FVLTILTLISGTIFYSTVEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIG 70
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D+++F +VT+TTVGYGD P + K+ +Y+F G+ LV
Sbjct: 34 IDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 46/90 (51%)
Query: 49 SQEEIRFRQXXXXXXXXXXXXXXCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLV 108
+ ++IRF +++ + V D++++ +VT TTVGYGD+V
Sbjct: 139 AADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVV 198
Query: 109 PHSTLAKLLACVYVFSGMALVGLILGKAAD 138
P + + K++ + +G++ + L++G ++
Sbjct: 199 PATPIGKVIGIAVMLTGISALTLLIGTVSN 228
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 209 DALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICL 248
DAL+ T TT+GYGD+ +T G+ + +L+G L
Sbjct: 180 DALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISAL 219
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 74 FLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLIL 133
++I I+ EK + ++++ +VT++T GYGD +P S ++LA + SG+ + GL
Sbjct: 148 YVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWA 207
Query: 134 G 134
G
Sbjct: 208 G 208
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 209 DALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLY----LTELYTQSRQ 264
A++ T++T GYGD + GR A ++SG + F L+ T Y + R+
Sbjct: 164 QAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSG---IGIFGLWAGILATGFYQEVRR 220
Query: 265 NSFVK 269
FV+
Sbjct: 221 GDFVR 225
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
F+L +L +I+G +F S VE L+ +DAL+ T+TT+GYGD S T G+ F + +I G
Sbjct: 11 FVLTILTLISGTIFYSTVEGLRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIG 70
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D+++F +VT+TTVGYGD P + K+ +Y+F G+ LV
Sbjct: 34 IDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 46/90 (51%)
Query: 49 SQEEIRFRQXXXXXXXXXXXXXXCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLV 108
+ ++IRF +++ + V D++++ +VT TTVGYGD+V
Sbjct: 127 AADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVV 186
Query: 109 PHSTLAKLLACVYVFSGMALVGLILGKAAD 138
P + + K++ + +G++ + L++G ++
Sbjct: 187 PATPIGKVIGIAVMLTGISALTLLIGTVSN 216
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 209 DALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICL 248
DAL+ T TT+GYGD+ +T G+ + +L+G L
Sbjct: 168 DALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISAL 207
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
F+L +L +I+G +F S VE L+ +DALY T+TT+G GD S T G+ F + +I G
Sbjct: 11 FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIG 70
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D++YF +VT+TTVG GD P + K+ +Y+F G+ LV
Sbjct: 34 IDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGLV 74
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 178 KYKLVTATFILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFF 236
K K F+L +L +I+G +F S VE L+ +DALY T+TT+G G+ S T G+ F
Sbjct: 2 KDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIF 61
Query: 237 AVFWILSG 244
+ +I G
Sbjct: 62 TILYIFIG 69
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D++YF +VT+TTVG G+ P + K+ +Y+F G+ LV
Sbjct: 33 IDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLV 73
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
LD++YF +VT+TTVG G+ P + K+ +Y+F G+ LV
Sbjct: 54 LDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLV 94
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 186 FILLVLII-AGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
F+L L + +G +F S VE L+ +DALY T+TT+G G+ S T G+ F + +I G
Sbjct: 31 FVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIG 90
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
F+L +L +I+G +F S VE L+ +DALY T+TT+G G+ S T G+ F + +I G
Sbjct: 28 FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIG 87
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D++YF +VT+TTVG G+ P + K+ +Y+F G+ LV
Sbjct: 51 IDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGLV 91
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
F+L +L +I+G +F S VE L+ +DALY T+TT+G G+ S T G+ F + +I G
Sbjct: 28 FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIG 87
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D++YF +VT+TTVG G+ P + K+ +Y+F G+ LV
Sbjct: 51 IDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLV 91
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
F+L +L +I+G +F S VE L+ +DALY T+TT+G G+ S T G+ F + +I G
Sbjct: 28 FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIG 87
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D++YF +VT+TTVG G+ P + K+ +Y+F G+ LV
Sbjct: 51 IDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGLV 91
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + +L+A V + +G+ GL+ A + V ++Q
Sbjct: 44 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 19/108 (17%)
Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSF 228
+ ++ A +LLV+++ +L+V+ + + + AL+ T TT+GYGD+
Sbjct: 3 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP 62
Query: 229 STRGGRFFAVFWILSG-------TICLAQFFLYLTELYTQSRQNSFVK 269
T GR AV +++G T LA +F+ Q R+ FV+
Sbjct: 63 VTLWGRLVAVVVMVAGITSFGLVTAALATWFVG----REQERRGHFVR 106
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 90 DSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
D++++ + T TTVGYGDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 87 DALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQ 142
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSF 228
+ ++ A +LLV+++ +L+V+ + + + DAL+ T TT+GYGD+
Sbjct: 47 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYP 106
Query: 229 STRGGRFFAVFWILSGTICLAQFFLYLTELYT---QSRQNSFVK 269
T GR AV +++G F + + Q R+ FV+
Sbjct: 107 VTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHFVR 150
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + +L+A V + +G+ GL+ A + V ++Q
Sbjct: 72 ALWWSVATATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 126
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 15/92 (16%)
Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSF 228
+ ++ A +LLV+++ +L+V+ + + + AL+ +T TT+GYGD+
Sbjct: 31 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYP 90
Query: 229 STRGGRFFAVFWILSG-------TICLAQFFL 253
T GR AV +++G T LA +F+
Sbjct: 91 VTLWGRLVAVVVMVAGITSFGLVTAALATWFV 122
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
F+L +L +I+G +F S VE L+ +DALY T+TT+G G+ S T G+ F + +I G
Sbjct: 28 FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIG 87
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D++YF +VT+TTVG G+ P + K+ +Y+F G+ LV
Sbjct: 51 IDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLV 91
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 79 QIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILG 134
I + G + + +F + T+ TVGYGD+ P + A +A + +F GM+ + L G
Sbjct: 88 PIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTG 143
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 79 QIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILG 134
I + G + + +F + T+ TVGYGD+ P + A +A + +F GM+ + L G
Sbjct: 88 PIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTG 143
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D++YF +VT+TTVG G+ P + K+ +Y+F G+ LV
Sbjct: 51 IDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGLV 91
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 186 FILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
F+L +L +I+G +F S VE L+ +DALY T+TT+G G+ T G+ F + +I G
Sbjct: 28 FVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIG 87
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + +L+A V + +G+ GL+ A + V ++Q
Sbjct: 43 ALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 97
Score = 35.8 bits (81), Expect = 0.033, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 16/85 (18%)
Query: 184 ATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
AT +L+++++AG +L+V+ + + + AL+ T TT+GYGD+ T GR
Sbjct: 10 ATVLLVIVLLAG-SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRL 68
Query: 236 FAVFWILSG-------TICLAQFFL 253
AV +++G T LA +F+
Sbjct: 69 VAVVVMVAGITSFGLVTAALATWFV 93
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + +L+A V + +G+ GL+ A + V ++Q
Sbjct: 44 ALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98
Score = 35.8 bits (81), Expect = 0.033, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 16/85 (18%)
Query: 184 ATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
AT +L+++++AG +L+V+ + + + AL+ T TT+GYGD+ T GR
Sbjct: 11 ATVLLVIVLLAG-SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRL 69
Query: 236 FAVFWILSG-------TICLAQFFL 253
AV +++G T LA +F+
Sbjct: 70 VAVVVMVAGITSFGLVTAALATWFV 94
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ ++T TTVGYGDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 44 ALWWSVITATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 16/85 (18%)
Query: 184 ATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
AT +L+++++AG +L+V+ + + + AL+ T TT+GYGD+ T GR
Sbjct: 11 ATVLLVIVLLAG-SYLAVLAERGAPGAQLITYPRALWWSVITATTVGYGDLYPVTLWGRC 69
Query: 236 FAVFWILSG-------TICLAQFFL 253
AV +++G T LA +F+
Sbjct: 70 VAVVVMVAGITSFGLVTAALATWFV 94
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + +L+A V + +G+ GL+ A + V ++Q
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 184 ATFILLVLIIAGIVFLSVVED-------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFF 236
AT +L+++++AG + E + + AL+ T TT+GYGD+ T GR
Sbjct: 32 ATVLLVIVLLAGSYLACLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLV 91
Query: 237 AVFWILSG-------TICLAQFFL 253
AV +++G T LA +F+
Sbjct: 92 AVVVMVAGITSFGLVTAALATWFV 115
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 28/145 (19%)
Query: 90 DSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE--KQQLL 147
+ +F +TT+GYG++ + +L Y G+ L G++L D L + +
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIG 177
Query: 148 LVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFL-------S 200
++A++ ++ H V +LV +L L+I ++F+
Sbjct: 178 HIEAIF------------------LKWH-VPPELVRVLSAMLFLLIGCLLFVLTPTFVFC 218
Query: 201 VVEDLKFVDALYCVCSTITTLGYGD 225
+ED ++A+Y V T+TT+G+GD
Sbjct: 219 YMEDWSKLEAIYFVIVTLTTVGFGD 243
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 89 LDSIYFCIVTMTTVGYGDLV----PH--STLAKLLACVYVFSGMALVGLILGKAADYL 140
L++IYF IVT+TTVG+GD V P S + L ++ G+A +L ++L
Sbjct: 226 LEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWL 283
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 209 DALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
A + + ITT+GYG+++ T GR F +F+ L G
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVG 153
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 119
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 20/100 (20%)
Query: 185 TFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFF 236
T +L+++++AG +L+V+ + + + AL+ T TT+GYGD+ T GR
Sbjct: 33 TVLLVIVLLAG-SYLAVLAERGAPGAQLITYPAALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 237 AVFWILSG-------TICLAQFFLYLTELYTQSRQNSFVK 269
AV +++G T LA +F+ Q R+ FV+
Sbjct: 92 AVVVMVAGITSFGLVTAALATWFVG----REQERRGHFVR 127
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 44 ALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98
Score = 35.0 bits (79), Expect = 0.066, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 16/85 (18%)
Query: 184 ATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
AT +L+++++AG +L+V+ + + + AL+ +T TT+GYGD+ T GR
Sbjct: 11 ATVLLVIVLLAG-SYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRC 69
Query: 236 FAVFWILSG-------TICLAQFFL 253
AV +++G T LA +F+
Sbjct: 70 VAVVVMVAGITSFGLVTAALATWFV 94
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 65 ALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 119
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 15/93 (16%)
Query: 176 KVKYKLVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMS 227
+ ++ A +LLV+++ +L+V+ + + + AL+ +T TT+GYGD+
Sbjct: 23 ALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLY 82
Query: 228 FSTRGGRFFAVFWILSG-------TICLAQFFL 253
T GR AV +++G T LA +F+
Sbjct: 83 PVTLWGRCVAVVVMVAGITSFGLVTAALATWFV 115
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 44 ALWWSVSTATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98
Score = 36.2 bits (82), Expect = 0.029, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 16/85 (18%)
Query: 184 ATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
AT +L+++++AG +L+V+ + + + AL+ ST TT+GYGD+ T GR
Sbjct: 11 ATVLLVIVLLAG-SYLAVLAERGAPGAQLITYPRALWWSVSTATTVGYGDLYPVTLWGRC 69
Query: 236 FAVFWILSG-------TICLAQFFL 253
AV +++G T LA +F+
Sbjct: 70 VAVVVMVAGITSFGLVTAALATWFV 94
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 80 IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKA 136
I + G + +F + T+ TVGYGD+ P + A +A + +F GM+ + L G A
Sbjct: 71 IANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCA 127
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 44 ALWWSVQTATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98
Score = 34.3 bits (77), Expect = 0.094, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 16/85 (18%)
Query: 184 ATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
AT +L+++++AG +L+V+ + + + AL+ T TT+GYGD+ T GR
Sbjct: 11 ATVLLVIVLLAG-SYLAVLAERGAPGAQLITYPRALWWSVQTATTVGYGDLYPVTLWGRC 69
Query: 236 FAVFWILSG-------TICLAQFFL 253
AV +++G T LA +F+
Sbjct: 70 VAVVVMVAGITSFGLVTAALATWFV 94
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 78 HQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAA 137
H I+GE S+Y+ VT+ TVGYGD PH+ L C + G+ + + +
Sbjct: 29 HFIEGESWTV---SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLL 85
Query: 138 DYLVEK 143
++L+ +
Sbjct: 86 EFLINR 91
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 182 VTATFILLVL---IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAV 238
V AT ILL++ II G +E + +LY TI T+GYGD S T G +F
Sbjct: 8 VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTC 67
Query: 239 FWILSG 244
I+ G
Sbjct: 68 TLIVLG 73
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 44 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98
Score = 34.3 bits (77), Expect = 0.095, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 16/85 (18%)
Query: 184 ATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
AT +L+++++AG +L+V+ + + + AL+ T TT+GYGD+ T GR
Sbjct: 11 ATVLLVIVLLAG-SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRC 69
Query: 236 FAVFWILSG-------TICLAQFFL 253
AV +++G T LA +F+
Sbjct: 70 VAVVVMVAGITSFGLVTAALATWFV 94
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 65 ALWWSVHTATTVGYGDLYPVTLWGRCVAVVVMVAGITSAGLVTAALATWFVGREQ 119
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSF 228
+ ++ A +LLV+++ +L+V+ + + + AL+ T TT+GYGD+
Sbjct: 24 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVHTATTVGYGDLYP 83
Query: 229 STRGGRFFAVFWILSG-------TICLAQFFL 253
T GR AV +++G T LA +F+
Sbjct: 84 VTLWGRCVAVVVMVAGITSAGLVTAALATWFV 115
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 43 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 97
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 16/85 (18%)
Query: 184 ATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
AT +L+++++AG +L+V+ + + + AL+ T TT+GYGD+ T GR
Sbjct: 10 ATVLLVIVLLAG-SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRC 68
Query: 236 FAVFWILSG-------TICLAQFFL 253
AV +++G T LA +F+
Sbjct: 69 VAVVVMVAGITSFGLVTAALATWFV 93
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 119
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSF 228
+ ++ A +LLV+++ +L+V+ + + + AL+ T TT+GYGD+
Sbjct: 24 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP 83
Query: 229 STRGGRFFAVFWILSG-------TICLAQFFL 253
T GR AV +++G T LA +F+
Sbjct: 84 VTLWGRCVAVVVMVAGITSFGLVTAALATWFV 115
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 119
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSF 228
+ ++ A +LLV+++ +L+V+ + + + AL+ T TT+GYGD+
Sbjct: 24 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP 83
Query: 229 STRGGRFFAVFWILSG-------TICLAQFFL 253
T GR AV +++G T LA +F+
Sbjct: 84 VTLWGRCVAVVVMVAGITSFGLVTAALATWFV 115
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 119
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSF 228
+ ++ A +LLV+++ +L+V+ + + + AL+ T TT+GYGD+
Sbjct: 24 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP 83
Query: 229 STRGGRFFAVFWILSG-------TICLAQFFL 253
T GR AV +++G T LA +F+
Sbjct: 84 VTLWGRCVAVVVMVAGITSFGLVTAALATWFV 115
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 119
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSF 228
+ ++ A +LLV+++ +L+V+ + + + AL+ T TT+GYGD+
Sbjct: 24 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP 83
Query: 229 STRGGRFFAVFWILSG-------TICLAQFFL 253
T GR AV +++G T LA +F+
Sbjct: 84 VTLWGRCVAVVVMVAGITSFGLVTAALATWFV 115
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 168 VLKDVETHKVKYKLVTATFILLVL---IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYG 224
V++ + H + V AT ILL++ II G +E + +LY TI T+GYG
Sbjct: 4 VIEIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYG 63
Query: 225 DMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYT 260
D S ST G +F V I+ G +A F + + L T
Sbjct: 64 DYSPSTPLGMYFTVTLIVLG---IATFAVAVARLLT 96
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 78 HQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAA 137
H I+GE S+Y+ VT+ TVGYGD P + L + G+A + + +
Sbjct: 39 HFIEGESWT---VSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVAVARLL 95
Query: 138 DYLVEKQQLLLV 149
+L+ ++Q+ L+
Sbjct: 96 TFLINREQMKLI 107
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLV 141
++++ + T TTVGYGDL P + +L+A V + +G+ GL+ A + V
Sbjct: 71 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 121
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 15/92 (16%)
Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSF 228
++++ A +LLV+++ +L+V+ + + + AL+ T TT+GYGD+
Sbjct: 30 LQWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP 89
Query: 229 STRGGRFFAVFWILSG-------TICLAQFFL 253
T GR AV +++G T LA +F+
Sbjct: 90 VTLWGRLVAVVVMVAGITSFGLVTAALATWFV 121
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T T VGYGDL P + +L+A V + +G+ GL+ A + V ++Q
Sbjct: 65 ALWWSVETATCVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSF 228
+ ++ A +LLV+++ +L+V+ + + + AL+ T T +GYGD+
Sbjct: 24 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATCVGYGDLYP 83
Query: 229 STRGGRFFAVFWILSG-------TICLAQFFL 253
T GR AV +++G T LA +F+
Sbjct: 84 VTLWGRLVAVVVMVAGITSFGLVTAALATWFV 115
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 88 VLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGL 131
+ D+ ++ +V+MTTVGYGD+VP + K++ + +G+ + L
Sbjct: 376 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIAL 419
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 186 FILLVLIIAGIVFLSVVE-DLKFV---DALYCVCSTITTLGYGDMSFSTRGGRFFAVFWI 241
FI ++L + + F E D +F DA + ++TT+GYGDM +T GG+
Sbjct: 351 FIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCA 410
Query: 242 LSGTICLA 249
++G + +A
Sbjct: 411 IAGVLTIA 418
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 88 VLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGL 131
+ D+ ++ +V+MTTVGYGD+VP + K++ + +G+ + L
Sbjct: 376 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIAL 419
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 186 FILLVLIIAGIVFLSVVE-DLKFV---DALYCVCSTITTLGYGDMSFSTRGGRFFAVFWI 241
FI ++L + + F E D +F DA + ++TT+GYGDM +T GG+
Sbjct: 351 FIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCA 410
Query: 242 LSGTICLA 249
++G + +A
Sbjct: 411 IAGVLTIA 418
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 88 VLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGL 131
+ D+ ++ +V+MTTVGYGD+VP + K++ + +G+ + L
Sbjct: 361 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIAL 404
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 186 FILLVLIIAGIVFLSVVE-DLKFV---DALYCVCSTITTLGYGDMSFSTRGGRFFAVFWI 241
FI ++L + + F E D +F DA + ++TT+GYGDM +T GG+
Sbjct: 336 FIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCA 395
Query: 242 LSGTICLA 249
++G + +A
Sbjct: 396 IAGVLTIA 403
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 88 VLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGL 131
+ D+ ++ +V+MTTVGYGD+VP + K++ + +G+ + L
Sbjct: 361 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIAL 404
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 186 FILLVLIIAGIVFLSVVE-DLKFV---DALYCVCSTITTLGYGDMSFSTRGGRFFAVFWI 241
FI ++L + + F E D +F DA + ++TT+GYGDM +T GG+
Sbjct: 336 FIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCA 395
Query: 242 LSGTICLA 249
++G + +A
Sbjct: 396 IAGVLTIA 403
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 78 HQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAA 137
H I+GE S+Y+ VT+ TVGYGD PH+ L C + G+ + + +
Sbjct: 22 HFIEGESWTV---SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVQRLL 78
Query: 138 DYLV 141
++L+
Sbjct: 79 EFLI 82
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 182 VTATFILLVL---IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAV 238
V AT ILL++ II G +E + +LY TI T+GYGD S T G +F
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTC 60
Query: 239 FWILSG 244
I+ G
Sbjct: 61 TLIVLG 66
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 78 HQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAA 137
H I+GE S+Y+ VT+ TVGYGD PH+ L C + G+ + + +
Sbjct: 22 HFIEGESWTV---SLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLL 78
Query: 138 DYLV 141
++L+
Sbjct: 79 EFLI 82
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 182 VTATFILLVL---IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAV 238
V AT ILL++ II G +E + +LY TI T+GYGD S T G +F
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTC 60
Query: 239 FWILSG 244
I+ G
Sbjct: 61 TLIVLG 66
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 168 VLKDVETHKVKYKLVTATFILLVL---IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYG 224
V++ + H + V AT ILL++ II G +E + +LY TI T+GYG
Sbjct: 4 VIEIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYG 63
Query: 225 DMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQ 264
D S ST G +F V I+ G A L E Q
Sbjct: 64 DYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQ 103
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 78 HQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAA 137
H I+GE S+Y+ VT+ TVGYGD P + L + G+ + + +
Sbjct: 39 HFIEGESWT---VSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLL 95
Query: 138 DYLVEKQQLLLV 149
++L+ ++Q+ L+
Sbjct: 96 EFLINREQMKLM 107
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 164 SAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLK-----FVDALYCVCSTI 218
+A L+ +K L+ F+L++L+ +F ++ L+ F+ +Y + +
Sbjct: 4 GSAYFLRGRARQNLKVLLLYCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVM 63
Query: 219 TTLGYGDMSFSTRGGRFFAVFWILSGTICL 248
TTLG+GD++F + G FA +SG I L
Sbjct: 64 TTLGFGDITFESDAGYLFASIVTVSGVIFL 93
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLIL 133
+ IY+ I MTT+G+GD+ S L A + SG+ + +IL
Sbjct: 53 MAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLLIIL 97
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 164 SAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLK-----FVDALYCVCSTI 218
+A L+ +K L+ F+L++L+ +F ++ L+ F+ +Y + +
Sbjct: 4 GSAYFLRGRARQNLKVLLLYCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVM 63
Query: 219 TTLGYGDMSFSTRGGRFFAVFWILSGTICL 248
TTLG+GD++F + G FA +SG I L
Sbjct: 64 TTLGFGDITFESDAGYLFASIVTVSGVIFL 93
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLIL 133
+ IY+ I MTT+G+GD+ S L A + SG+ + +IL
Sbjct: 53 MAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIIL 97
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ T TTV YGDL P + +L+A V + +G+ GL+ A + V ++Q
Sbjct: 65 ALWWACETATTVXYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSF 228
+ ++ A +LLV+++ +L+V+ + + + AL+ C T TT+ YGD+
Sbjct: 24 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVXYGDLYP 83
Query: 229 STRGGRFFAVFWILSG-------TICLAQFFL 253
T GR AV +++G T LA +F+
Sbjct: 84 VTLWGRLVAVVVMVAGITSFGLVTAALATWFV 115
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 78 HQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAA 137
H I+GE S+Y+ VT+ VGYGD PH+ L C + G+ + + +
Sbjct: 22 HFIEGESWTV---SLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLL 78
Query: 138 DYLV 141
++L+
Sbjct: 79 EFLI 82
Score = 31.6 bits (70), Expect = 0.61, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 182 VTATFILLVL---IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAV 238
V AT ILL++ II G +E + +LY TI +GYGD S T G +F
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTC 60
Query: 239 FWILSG 244
I+ G
Sbjct: 61 TLIVLG 66
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 178 KYKLVTATFILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFF 236
K K F+L +L +I+G +F S VE L+ +DALY T+TT+G T G+ F
Sbjct: 3 KDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVG-NTPPPQTDFGKIF 61
Query: 237 AVFWILSG 244
+ +I G
Sbjct: 62 TILYIFIG 69
Score = 35.4 bits (80), Expect = 0.050, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D++YF +VT+TTVG P + K+ +Y+F G+ LV
Sbjct: 34 IDALYFSVVTLTTVG-NTPPPQTDFGKIFTILYIFIGIGLV 73
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 178 KYKLVTATFILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFF 236
K K F+L +L +I+G +F S VE L+ +DALY T+TT+G T G+ F
Sbjct: 3 KDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGETPPP-QTDFGKIF 61
Query: 237 AVFWILSG 244
+ +I G
Sbjct: 62 TILYIFIG 69
Score = 35.0 bits (79), Expect = 0.064, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D++YF +VT+TTVG P + K+ +Y+F G+ LV
Sbjct: 34 IDALYFSVVTLTTVGETP-PPQTDFGKIFTILYIFIGIGLV 73
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLV 141
++++ + T TTVGYGDL P + + +A V + +G+ GL+ A + V
Sbjct: 45 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFV 95
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 15/92 (16%)
Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSF 228
++++ A +LLV+++ +L+V+ + + + AL+ T TT+GYGD+
Sbjct: 4 LQWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP 63
Query: 229 STRGGRFFAVFWILSG-------TICLAQFFL 253
T GR AV +++G T LA +F+
Sbjct: 64 VTLWGRCVAVVVMVAGITSFGLVTAALATWFV 95
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 80 IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGM 126
I+ + D+ +F + TM T+GYG L+P LA L + GM
Sbjct: 75 IENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 80 IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGM 126
I+ + D+ +F + TM T+GYG L+P LA L + GM
Sbjct: 75 IENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 80 IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGM 126
I+ + D+ +F + TM T+GYG L+P LA L + GM
Sbjct: 75 IENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 80 IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGM 126
I+ + D+ +F + TM T+GYG L+P LA L + GM
Sbjct: 75 IENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 80 IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGM 126
I+ + D+ +F + TM T+GYG L+P LA L + GM
Sbjct: 75 IENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 80 IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGM 126
I+ + D+ +F + TM T+GYG L+P LA L + GM
Sbjct: 75 IENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 37.4 bits (85), Expect = 0.012, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 178 KYKLVTATFILLVL-IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFF 236
K K F+L +L +I+G +F S VE L+ +DALY T+TT+G T G+ F
Sbjct: 3 KDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVG-DTPPPQTDFGKIF 61
Query: 237 AVFWILSG 244
+ +I G
Sbjct: 62 TILYIFIG 69
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 89 LDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129
+D++YF +VT+TTVG P + K+ +Y+F G+ LV
Sbjct: 34 IDALYFSVVTLTTVG-DTPPPQTDFGKIFTILYIFIGIGLV 73
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 78 HQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAA 137
H I+GE S+Y+ VT+ TVGYGD P + L C + G+ + + +
Sbjct: 22 HFIEGESWTV---SLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIGTFAVAVERLL 78
Query: 138 DYLV 141
++L+
Sbjct: 79 EFLI 82
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 182 VTATFILLVL---IIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAV 238
V AT ILL++ II G +E + +LY TI T+GYGD S T G +F
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPRTPLGMYFTC 60
Query: 239 FWILSG 244
I+ G
Sbjct: 61 TLIVLG 66
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 72 CFFLIRHQIKG--EKTNGVLDSIYFCIVTMTTVGYGDLVP 109
CFF I + E L+S YFC ++++T+G GD VP
Sbjct: 184 CFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVP 223
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 17/150 (11%)
Query: 79 QIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAAD 138
Q G +++F ++T GYG VP S K +Y G+ L L
Sbjct: 85 QASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQ 144
Query: 139 YL---VEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAG 195
+ V ++ +L + + V H V VT + I
Sbjct: 145 RITVHVTRRPVLYFHIRWGFSKQVVAIV-----------HAVLLGFVTVS---CFFFIPA 190
Query: 196 IVFLSVVEDLKFVDALYCVCSTITTLGYGD 225
VF + +D F+++ Y +++T+G GD
Sbjct: 191 AVFSVLEDDWNFLESFYFCFISLSTIGLGD 220
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
++++ + T TTVGYGDL P + + +A V V +G+ GL+ A + V ++Q
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVVVAGITSFGLVTAALATWFVGREQ 119
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSF 228
+ ++ A +LLV+++ +L+V+ + + + AL+ T TT+GYGD+
Sbjct: 24 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP 83
Query: 229 STRGGR 234
T GR
Sbjct: 84 VTLWGR 89
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 32.7 bits (73), Expect = 0.31, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 90 DSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
D+I++ + T TTVGYGD P + + +A + +G+ + L+ A V +++
Sbjct: 43 DAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 285 DLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
D D D + EF+I ++M + E+ + E FR D D +G ++ A++
Sbjct: 348 DADGDGTIDFPEFLIMMARKMKDTDSEE--EIREAFRVFDKDGNGYISAAEL 397
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 308 INEEDISVLMERFRTLDADQSGNLT 332
++EE+I+ L E F +DAD+SG +T
Sbjct: 21 LSEEEIAGLKEXFNXIDADKSGQIT 45
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 300 YKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQ 341
Y L+ + ++I L +RF+ LD D SG+L+ + M L +
Sbjct: 7 YPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPE 48
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 300 YKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQ 341
Y L+ + ++I L +RF+ LD D SG+L+ + M L +
Sbjct: 6 YPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPE 47
>pdb|1S6J|A Chain A, N-Terminal Region Of The Ca2+-Saturated Calcium Regulatory
Domain (Cld) From Soybean Calcium-Dependent Protein
Kinase- Alpha (Cdpk)
Length = 87
Score = 27.7 bits (60), Expect = 8.5, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 307 KINEEDISVLMERFRTLDADQSGNLT 332
+++EE+I L E F+ +D D SG +T
Sbjct: 16 RLSEEEIGGLKELFKMIDTDNSGTIT 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,529,454
Number of Sequences: 62578
Number of extensions: 304905
Number of successful extensions: 1062
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 161
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)