Query 038674
Match_columns 343
No_of_seqs 355 out of 2819
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 13:29:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4404 Tandem pore domain K+ 100.0 2.9E-30 6.3E-35 232.7 18.0 195 54-262 8-250 (350)
2 KOG1418 Tandem pore domain K+ 99.9 1E-25 2.2E-30 219.7 6.3 171 81-252 109-296 (433)
3 PF07885 Ion_trans_2: Ion chan 99.6 7E-16 1.5E-20 115.8 3.0 74 187-260 2-78 (79)
4 PF07885 Ion_trans_2: Ion chan 99.6 1.4E-14 3E-19 108.7 9.6 76 62-141 3-78 (79)
5 PRK10537 voltage-gated potassi 99.6 1.3E-14 2.7E-19 140.2 10.1 116 182-306 138-263 (393)
6 KOG3713 Voltage-gated K+ chann 99.5 2.9E-13 6.4E-18 129.8 16.6 87 182-268 347-439 (477)
7 KOG3713 Voltage-gated K+ chann 99.5 3.4E-13 7.3E-18 129.4 11.3 74 72-145 362-435 (477)
8 KOG1419 Voltage-gated K+ chann 99.4 1E-12 2.2E-17 126.7 7.8 99 178-276 230-339 (654)
9 KOG1545 Voltage-gated shaker-l 99.3 1.1E-12 2.3E-17 120.8 5.4 83 183-265 364-452 (507)
10 KOG1419 Voltage-gated K+ chann 99.3 3.5E-12 7.7E-17 123.0 7.9 80 62-141 240-323 (654)
11 KOG1420 Ca2+-activated K+ chan 99.3 1.8E-11 3.8E-16 118.6 9.6 106 176-293 245-363 (1103)
12 PRK10537 voltage-gated potassi 99.3 6.1E-11 1.3E-15 114.7 13.1 83 64-147 146-228 (393)
13 PLN03192 Voltage-dependent pot 99.2 1.9E-10 4.2E-15 121.9 13.3 56 88-143 251-306 (823)
14 KOG1545 Voltage-gated shaker-l 99.2 6.2E-12 1.3E-16 115.8 0.4 84 54-138 357-444 (507)
15 KOG4390 Voltage-gated A-type K 99.1 1.2E-10 2.7E-15 108.2 4.6 87 54-140 323-409 (632)
16 PLN03192 Voltage-dependent pot 99.0 7.2E-09 1.6E-13 110.0 18.2 57 207-263 251-307 (823)
17 KOG4404 Tandem pore domain K+ 99.0 2.2E-09 4.8E-14 98.0 11.1 85 177-261 5-135 (350)
18 KOG4390 Voltage-gated A-type K 99.0 7E-11 1.5E-15 109.8 -0.8 78 183-260 327-410 (632)
19 KOG1418 Tandem pore domain K+ 98.9 3E-09 6.6E-14 103.6 8.9 60 205-264 114-173 (433)
20 KOG1420 Ca2+-activated K+ chan 98.9 2.1E-09 4.7E-14 104.3 5.1 101 43-143 238-344 (1103)
21 KOG0498 K+-channel ERG and rel 98.6 1.9E-07 4.2E-12 95.6 11.3 55 88-142 295-349 (727)
22 KOG0498 K+-channel ERG and rel 98.6 2.4E-08 5.2E-13 102.1 4.0 55 208-262 296-350 (727)
23 KOG3193 K+ channel subunit [In 98.5 2.4E-06 5.2E-11 83.1 13.6 82 181-262 187-273 (1087)
24 KOG3684 Ca2+-activated K+ chan 98.4 8E-06 1.7E-10 78.2 15.1 83 181-263 254-344 (489)
25 KOG3684 Ca2+-activated K+ chan 98.3 2.9E-06 6.2E-11 81.3 9.2 85 57-141 256-341 (489)
26 KOG0501 K+-channel KCNQ [Inorg 98.3 2.6E-06 5.5E-11 83.6 8.2 57 86-142 422-478 (971)
27 PF01007 IRK: Inward rectifier 98.3 3.3E-06 7.1E-11 80.1 8.8 57 86-142 83-141 (336)
28 KOG0501 K+-channel KCNQ [Inorg 97.8 1.8E-05 3.8E-10 77.8 3.7 56 207-262 424-479 (971)
29 KOG3193 K+ channel subunit [In 97.7 8.7E-05 1.9E-09 72.5 7.8 63 82-144 212-274 (1087)
30 PF01007 IRK: Inward rectifier 97.7 1.5E-05 3.2E-10 75.7 2.4 59 205-263 83-143 (336)
31 KOG0500 Cyclic nucleotide-gate 97.1 0.0025 5.4E-08 62.1 9.1 56 88-144 184-239 (536)
32 TIGR00933 2a38 potassium uptak 97.1 0.00098 2.1E-08 64.9 6.1 177 62-244 204-389 (390)
33 PF00520 Ion_trans: Ion transp 97.1 0.0065 1.4E-07 52.1 10.7 51 85-135 143-199 (200)
34 KOG3827 Inward rectifier K+ ch 96.8 0.0091 2E-07 56.6 9.9 125 19-143 23-170 (400)
35 PRK05482 potassium-transportin 96.7 0.01 2.3E-07 59.5 10.3 173 55-244 281-491 (559)
36 PRK10750 potassium transporter 96.5 0.0072 1.6E-07 60.4 7.1 182 55-244 274-465 (483)
37 KOG0500 Cyclic nucleotide-gate 96.4 0.012 2.7E-07 57.3 8.1 53 210-263 187-239 (536)
38 TIGR00933 2a38 potassium uptak 96.2 0.021 4.5E-07 55.7 8.8 146 62-245 110-272 (390)
39 KOG0499 Cyclic nucleotide-gate 95.9 0.048 1E-06 54.5 9.2 56 86-142 402-457 (815)
40 KOG1053 Glutamate-gated NMDA-t 95.8 0.056 1.2E-06 56.3 9.7 122 15-144 529-666 (1258)
41 KOG3827 Inward rectifier K+ ch 95.8 0.072 1.6E-06 50.7 9.7 58 205-262 111-170 (400)
42 PRK10750 potassium transporter 95.7 0.07 1.5E-06 53.4 9.9 61 57-125 184-249 (483)
43 KOG4440 NMDA selective glutama 95.4 0.039 8.5E-07 55.3 6.8 120 17-141 537-667 (993)
44 PF02386 TrkH: Cation transpor 95.4 0.011 2.3E-07 57.0 2.7 152 86-244 175-338 (354)
45 PF00060 Lig_chan: Ligand-gate 95.2 0.024 5.2E-07 46.8 4.2 68 86-154 43-110 (148)
46 KOG0499 Cyclic nucleotide-gate 95.2 0.097 2.1E-06 52.4 8.7 56 204-260 401-456 (815)
47 COG0168 TrkG Trk-type K+ trans 95.2 0.13 2.9E-06 51.7 9.8 61 184-244 402-470 (499)
48 PF00520 Ion_trans: Ion transp 95.0 0.052 1.1E-06 46.5 5.7 50 205-254 144-199 (200)
49 KOG1052 Glutamate-gated kainat 94.7 0.082 1.8E-06 55.1 7.3 125 14-144 306-437 (656)
50 PF13202 EF-hand_5: EF hand; P 92.9 0.1 2.3E-06 29.6 2.3 22 317-338 2-23 (25)
51 KOG3676 Ca2+-permeable cation 92.2 13 0.00027 39.1 17.6 91 185-275 548-663 (782)
52 KOG1054 Glutamate-gated AMPA-t 91.1 0.055 1.2E-06 54.0 -0.4 122 16-142 512-649 (897)
53 PF00036 EF-hand_1: EF hand; 90.8 0.27 5.9E-06 29.0 2.5 23 316-338 2-24 (29)
54 PF13499 EF-hand_7: EF-hand do 90.7 0.89 1.9E-05 31.8 5.8 56 282-338 7-64 (66)
55 PF00060 Lig_chan: Ligand-gate 90.4 0.13 2.8E-06 42.3 1.3 57 206-263 44-100 (148)
56 PF13405 EF-hand_6: EF-hand do 89.8 0.32 6.8E-06 28.9 2.3 23 316-338 2-24 (31)
57 KOG0027 Calmodulin and related 86.6 1.2 2.6E-05 37.1 4.7 56 283-338 52-109 (151)
58 smart00027 EH Eps15 homology d 85.2 1.2 2.6E-05 34.1 3.7 31 308-338 4-34 (96)
59 TIGR00934 2a38euk potassium up 84.7 28 0.0006 37.0 14.2 64 183-247 586-662 (800)
60 COG0168 TrkG Trk-type K+ trans 84.3 17 0.00037 36.7 12.4 41 86-127 197-244 (499)
61 PF02386 TrkH: Cation transpor 82.8 0.61 1.3E-05 44.8 1.4 45 86-130 52-102 (354)
62 TIGR00934 2a38euk potassium up 82.4 1.4 3E-05 46.4 3.8 72 56-128 585-662 (800)
63 PF13499 EF-hand_7: EF-hand do 82.2 1.3 2.8E-05 31.0 2.6 24 315-338 1-24 (66)
64 KOG0031 Myosin regulatory ligh 81.9 1.4 3E-05 36.9 2.9 32 308-339 26-57 (171)
65 PF13833 EF-hand_8: EF-hand do 81.8 6.8 0.00015 26.1 6.0 45 290-338 3-49 (54)
66 COG5126 FRQ1 Ca2+-binding prot 79.2 5.6 0.00012 33.7 5.8 52 283-338 100-152 (160)
67 KOG3676 Ca2+-permeable cation 75.0 33 0.00072 36.1 11.0 56 85-140 584-647 (782)
68 KOG1052 Glutamate-gated kainat 74.9 5.4 0.00012 41.6 5.6 54 210-264 385-438 (656)
69 PF07077 DUF1345: Protein of u 74.8 6.9 0.00015 33.9 5.3 55 80-134 125-179 (180)
70 PLN03223 Polycystin cation cha 70.5 86 0.0019 35.5 13.1 31 232-262 1394-1425(1634)
71 KOG0044 Ca2+ sensor (EF-Hand s 68.5 10 0.00023 33.1 5.0 58 282-339 107-172 (193)
72 cd00252 SPARC_EC SPARC_EC; ext 68.3 5.4 0.00012 31.9 3.0 29 309-337 43-71 (116)
73 KOG4223 Reticulocalbin, calume 65.1 5.8 0.00013 37.2 2.9 56 282-337 207-264 (325)
74 PRK10929 putative mechanosensi 65.0 2.4E+02 0.0051 31.7 16.0 40 205-244 807-846 (1109)
75 PRK05482 potassium-transportin 64.2 1.5E+02 0.0032 30.4 12.8 52 86-137 450-504 (559)
76 cd00213 S-100 S-100: S-100 dom 63.8 6.9 0.00015 29.1 2.7 30 310-339 4-35 (88)
77 PTZ00183 centrin; Provisional 62.9 24 0.00052 28.8 6.1 55 282-339 97-151 (158)
78 cd05029 S-100A6 S-100A6: S-100 62.6 27 0.00059 26.2 5.8 45 289-337 26-74 (88)
79 PTZ00184 calmodulin; Provision 62.6 23 0.00049 28.4 5.8 49 285-337 94-143 (149)
80 cd05026 S-100Z S-100Z: S-100Z 61.6 32 0.0007 26.0 6.1 51 284-338 20-77 (93)
81 cd00052 EH Eps15 homology doma 61.1 33 0.00072 23.3 5.7 50 284-338 8-57 (67)
82 PTZ00183 centrin; Provisional 60.4 23 0.00049 28.9 5.5 51 285-338 63-114 (158)
83 cd05027 S-100B S-100B: S-100B 59.5 36 0.00078 25.6 5.9 49 286-338 20-75 (88)
84 KOG0038 Ca2+-binding kinase in 58.4 25 0.00055 29.3 5.1 55 283-338 116-173 (189)
85 KOG0034 Ca2+/calmodulin-depend 56.9 24 0.00053 30.7 5.2 56 284-339 113-172 (187)
86 cd05023 S-100A11 S-100A11: S-1 56.8 38 0.00083 25.5 5.7 48 287-337 22-75 (89)
87 smart00054 EFh EF-hand, calciu 56.1 10 0.00022 20.3 1.9 22 317-338 3-24 (29)
88 cd05027 S-100B S-100B: S-100B 54.0 16 0.00034 27.5 3.2 29 310-338 4-34 (88)
89 cd05025 S-100A1 S-100A1: S-100 53.9 15 0.00033 27.6 3.1 30 310-339 5-36 (92)
90 cd05022 S-100A13 S-100A13: S-1 53.7 16 0.00034 27.7 3.1 26 312-337 6-32 (89)
91 PTZ00184 calmodulin; Provision 53.5 42 0.00092 26.8 6.0 53 284-338 56-108 (149)
92 PLN02964 phosphatidylserine de 53.3 28 0.0006 36.3 5.7 53 283-339 187-240 (644)
93 KOG4440 NMDA selective glutama 52.9 9.9 0.00021 38.9 2.3 56 205-260 612-667 (993)
94 cd00051 EFh EF-hand, calcium b 50.7 65 0.0014 20.6 6.2 49 285-337 10-59 (63)
95 cd00052 EH Eps15 homology doma 49.9 9.8 0.00021 26.1 1.4 22 317-338 2-23 (67)
96 PF01595 DUF21: Domain of unkn 49.7 48 0.001 28.0 6.0 20 211-230 90-109 (183)
97 PF07077 DUF1345: Protein of u 48.7 4.8 0.0001 34.8 -0.5 48 205-252 131-178 (180)
98 KOG0028 Ca2+-binding protein ( 48.5 38 0.00081 28.7 4.7 18 319-336 111-128 (172)
99 cd05022 S-100A13 S-100A13: S-1 48.4 47 0.001 25.1 5.0 48 287-338 21-71 (89)
100 cd05031 S-100A10_like S-100A10 45.8 22 0.00047 26.8 2.8 28 311-338 5-34 (94)
101 KOG0034 Ca2+/calmodulin-depend 45.0 24 0.00051 30.8 3.2 34 306-339 25-59 (187)
102 KOG3599 Ca2+-modulated nonsele 44.6 4.4E+02 0.0095 28.5 15.7 56 183-242 595-657 (798)
103 PF06166 DUF979: Protein of un 44.5 81 0.0018 29.5 6.7 31 83-114 24-54 (308)
104 KOG0036 Predicted mitochondria 44.2 35 0.00077 33.3 4.5 18 319-336 87-104 (463)
105 KOG1054 Glutamate-gated AMPA-t 43.6 5.8 0.00013 40.2 -0.9 58 205-263 594-651 (897)
106 PF14788 EF-hand_10: EF hand; 43.4 62 0.0014 21.8 4.3 39 297-338 6-45 (51)
107 COG3817 Predicted membrane pro 42.5 93 0.002 28.5 6.6 28 84-112 29-56 (313)
108 smart00027 EH Eps15 homology d 42.0 1E+02 0.0022 23.2 6.0 50 284-338 19-68 (96)
109 TIGR00870 trp transient-recept 41.5 68 0.0015 34.0 6.7 57 219-275 569-631 (743)
110 PF10591 SPARC_Ca_bdg: Secrete 38.3 19 0.00042 28.5 1.5 32 309-340 49-80 (113)
111 cd05023 S-100A11 S-100A11: S-1 37.4 42 0.00091 25.3 3.2 30 310-339 5-36 (89)
112 cd00252 SPARC_EC SPARC_EC; ext 37.0 56 0.0012 26.0 4.0 47 283-336 56-102 (116)
113 cd05026 S-100Z S-100Z: S-100Z 37.0 39 0.00085 25.5 3.0 30 310-339 6-37 (93)
114 COG5126 FRQ1 Ca2+-binding prot 35.3 90 0.0019 26.5 5.1 47 289-338 69-116 (160)
115 KOG0044 Ca2+ sensor (EF-Hand s 34.7 65 0.0014 28.2 4.3 52 284-338 73-124 (193)
116 PLN03223 Polycystin cation cha 34.2 3.8E+02 0.0083 30.7 10.7 57 84-142 1358-1424(1634)
117 PF12763 EF-hand_4: Cytoskelet 34.2 28 0.00062 27.2 1.8 14 323-336 52-65 (104)
118 KOG0027 Calmodulin and related 32.8 1.3E+02 0.0028 24.7 5.8 52 283-337 93-144 (151)
119 KOG4223 Reticulocalbin, calume 30.7 64 0.0014 30.4 3.8 55 281-337 169-223 (325)
120 KOG1053 Glutamate-gated NMDA-t 30.2 2.2E+02 0.0049 30.9 7.9 41 223-263 622-666 (1258)
121 PRK12309 transaldolase/EF-hand 29.1 60 0.0013 31.7 3.6 31 308-338 351-381 (391)
122 PF06305 DUF1049: Protein of u 28.8 1.9E+02 0.0041 20.0 5.3 12 248-259 30-41 (68)
123 TIGR00870 trp transient-recept 27.3 6.2E+02 0.014 26.7 11.2 38 101-138 570-613 (743)
124 KOG0031 Myosin regulatory ligh 26.6 1.8E+02 0.004 24.6 5.4 24 316-339 103-126 (171)
125 PF08016 PKD_channel: Polycyst 26.2 4.7E+02 0.01 25.5 9.4 140 105-265 281-424 (425)
126 cd05030 calgranulins Calgranul 25.2 1.5E+02 0.0032 22.0 4.4 26 310-338 50-75 (88)
127 COG3462 Predicted membrane pro 25.2 3.5E+02 0.0075 21.4 11.8 32 290-321 85-116 (117)
128 PF04120 Iron_permease: Low af 24.4 2.1E+02 0.0045 23.5 5.3 38 295-332 82-119 (132)
129 COG1226 Kch Kef-type K+ transp 24.3 54 0.0012 27.4 2.1 47 86-132 116-162 (212)
130 KOG0037 Ca2+-binding protein, 23.9 81 0.0018 28.1 3.0 26 314-339 124-149 (221)
131 KOG0028 Ca2+-binding protein ( 23.7 2.2E+02 0.0047 24.3 5.4 48 285-336 116-164 (172)
132 PF11167 DUF2953: Protein of u 22.9 59 0.0013 21.7 1.6 24 219-245 1-24 (53)
133 PF08726 EFhand_Ca_insen: Ca2+ 22.4 93 0.002 22.4 2.6 25 314-339 6-30 (69)
134 PRK01844 hypothetical protein; 22.2 3.2E+02 0.0068 19.9 7.5 25 296-320 42-67 (72)
135 cd05029 S-100A6 S-100A6: S-100 21.4 1E+02 0.0022 23.0 2.8 27 311-337 7-35 (88)
136 PF04694 Corona_3: Coronavirus 21.4 80 0.0017 21.3 1.9 21 207-227 17-46 (60)
137 PRK12468 flhB flagellar biosyn 21.3 7.7E+02 0.017 24.0 12.4 10 253-262 204-213 (386)
138 PRK05702 flhB flagellar biosyn 21.3 7.5E+02 0.016 23.9 14.2 25 238-262 189-213 (359)
139 KOG4289 Cadherin EGF LAG seven 21.2 5.1E+02 0.011 30.1 8.8 35 214-248 2276-2310(2531)
140 PRK13109 flhB flagellar biosyn 21.1 7.5E+02 0.016 23.8 12.9 19 244-262 197-215 (358)
141 PRK12438 hypothetical protein; 20.9 5.8E+02 0.013 28.2 9.2 30 99-128 245-274 (991)
142 PRK08156 type III secretion sy 20.7 6.2E+02 0.013 24.5 8.6 151 116-290 74-224 (361)
143 PRK12721 secretion system appa 20.4 7.7E+02 0.017 23.7 13.2 22 242-263 186-207 (349)
144 PF15065 NCU-G1: Lysosomal tra 20.3 49 0.0011 31.8 1.1 22 89-110 128-149 (350)
No 1
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.9e-30 Score=232.72 Aligned_cols=195 Identities=22% Similarity=0.323 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc---------------------------------------ccCCCCCCchhhhhh
Q 038674 54 RFRQVLLLLVGYLGVGALCFFLIRHQ---------------------------------------IKGEKTNGVLDSIYF 94 (343)
Q Consensus 54 ~~~~~~~~l~~~l~~g~~~~~~~~~~---------------------------------------~~~~~~~~~~~a~y~ 94 (343)
+...+.+..+.|+++|+.+|-..|.. ....+.|.|..||||
T Consensus 8 R~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaFYF 87 (350)
T KOG4404|consen 8 RTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAFYF 87 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcceEE
Confidence 45556677888999999999777631 012334999999999
Q ss_pred hhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCcchhhhhhhhhh
Q 038674 95 CIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVET 174 (343)
Q Consensus 95 ~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~lr~le~ 174 (343)
+.+.+||||||.-+|.|..||+||++|+++|+++..+.+..+++.+..-. ..+.++.+++...+.. .+
T Consensus 88 a~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~-ayil~~~r~~~~~r~~--~~--------- 155 (350)
T KOG4404|consen 88 ATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFV-AYILRRCRRRLGRRRW--DV--------- 155 (350)
T ss_pred EEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccC--CC---------
Confidence 99999999999999999999999999999999999999999998775532 2334444443222111 11
Q ss_pred hhhhhH-HHHHHHHHHHHHHHHHHHHHhhcccCccceeeEEEeEeeecccCCcccCC--------ccchhHHHHHHHHHH
Q 038674 175 HKVKYK-LVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFST--------RGGRFFAVFWILSGT 245 (343)
Q Consensus 175 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~~t~tTvGyGD~~p~t--------~~gr~~~~~~~~~g~ 245 (343)
.... +...+...+++++.|+.+|...|+|+|+||+||||||+|||||||+++.. +.++.+..++|++|+
T Consensus 156 --S~~~l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl 233 (350)
T KOG4404|consen 156 --SVYNLVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGL 233 (350)
T ss_pred --cHHHHHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHH
Confidence 1122 23344556677889999999999999999999999999999999999864 467899999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038674 246 ICLAQFFLYLTELYTQS 262 (343)
Q Consensus 246 ~~~~~~~~~~~~~~~~~ 262 (343)
.+++.+++.+.-.+...
T Consensus 234 ~vi~a~~NllvLrf~t~ 250 (350)
T KOG4404|consen 234 CVIYALLNLLVLRFMTM 250 (350)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999998877555433
No 2
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1e-25 Score=219.74 Aligned_cols=171 Identities=26% Similarity=0.453 Sum_probs=133.0
Q ss_pred cCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhh
Q 038674 81 KGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVK------AMYN 154 (343)
Q Consensus 81 ~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 154 (343)
.....|+|.+|+||+++++||||||+++|.|..||++|++|+++|+|++.++++.+++++.+.......+ ....
T Consensus 109 ~~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~~~~~~~~~~~~ 188 (433)
T KOG1418|consen 109 PDTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLYRRRHVELQRDRI 188 (433)
T ss_pred CCCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 3455699999999999999999999999999999999999999999999999999999998766554421 0001
Q ss_pred hccccCCCcchhhhhhhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHhhcccCccceeeEEEeEeeecccCCcccCCc
Q 038674 155 YENASAGSVSAAEVLKDVETHK---VKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTR 231 (343)
Q Consensus 155 ~~~~~~~~~~~~e~lr~le~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~~t~tTvGyGD~~p~t~ 231 (343)
..+. ...........+..... .+.++..++.++++++..|+.++...|+|+|++|+||+++|+|||||||++|.+.
T Consensus 189 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~ 267 (433)
T KOG1418|consen 189 RSNL-RRSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTL 267 (433)
T ss_pred hhhh-hccccchhcccccchhhccCcceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCC
Confidence 1111 00000111111111111 2566777777888888999999999999999999999999999999999999998
Q ss_pred cch--------hHHHHHHHHHHHHHHHHH
Q 038674 232 GGR--------FFAVFWILSGTICLAQFF 252 (343)
Q Consensus 232 ~gr--------~~~~~~~~~g~~~~~~~~ 252 (343)
.++ .+..+++++|...++...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 268 LGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred cceeeccccccchhHHHHHhhhhHHHHHh
Confidence 866 688999999999888887
No 3
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.58 E-value=7e-16 Score=115.80 Aligned_cols=74 Identities=39% Similarity=0.709 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHh---hcccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 187 ILLVLIIAGIVFLSV---VEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYT 260 (343)
Q Consensus 187 ~~~~~~~~g~~~~~~---~e~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~ 260 (343)
+++.+++.|++++.. .|+|++.||+||+++|+|||||||+.|.++.||++++++++.|+.+++..++.+++.+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 2 ILLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566677777777 56799999999999999999999999999999999999999999999999999998765
No 4
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.57 E-value=1.4e-14 Score=108.68 Aligned_cols=76 Identities=34% Similarity=0.691 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 62 LVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLV 141 (343)
Q Consensus 62 l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~ 141 (343)
+++++..++..++. ++. .+.|++.||+||+++|+||+||||+.|.++.||+++++++++|++++++.++.+++.+.
T Consensus 3 ~~~~l~~~~~~~~~-~~~---~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 3 LLLVLAFGAIFFYI-SEG---SEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHH-TTS---SSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHH-HHh---cccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555566666665 221 23499999999999999999999999999999999999999999999999999988764
No 5
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.56 E-value=1.3e-14 Score=140.20 Aligned_cols=116 Identities=19% Similarity=0.236 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 038674 182 VTATFILLVLIIAGIVFLSVVED------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYL 255 (343)
Q Consensus 182 ~~~~~~~~~~~~~g~~~~~~~e~------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~ 255 (343)
..++..+..++..|+++++..|+ +++.||+||+++|+|||||||+.|.+..||+|++++++.|++++++.++.+
T Consensus 138 l~~~~~~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i 217 (393)
T PRK10537 138 LFAVISITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAI 217 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566667776665554 799999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhccCCCccee----hHHHHHHHHHHcC
Q 038674 256 TELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVS----VAEFVIYKLKEMG 306 (343)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~~~v~----~~e~v~~~L~~~~ 306 (343)
...+.+.+.++..+. ++ +....++|.+|| .++.+.++|.+.+
T Consensus 218 ~~p~i~~~l~~~~~~---~~------~~~~~k~HvII~G~g~lg~~v~~~L~~~g 263 (393)
T PRK10537 218 FGPVIRGNLKRLVKG---RI------SHMHRKDHFIICGHSPLAINTYLGLRQRG 263 (393)
T ss_pred HHHHHHHHHHHHHHh---hh------hhcccCCeEEEECCChHHHHHHHHHHHCC
Confidence 876665554433221 11 112236888887 4556777777665
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.53 E-value=2.9e-13 Score=129.78 Aligned_cols=87 Identities=22% Similarity=0.308 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 038674 182 VTATFILLVLIIAGIVFLSVVED------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYL 255 (343)
Q Consensus 182 ~~~~~~~~~~~~~g~~~~~~~e~------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~ 255 (343)
++.+++.+.+.++++++|....+ .|..-++||+++|||||||||++|.|..||+++..+++.|+.++|..+..+
T Consensus 347 lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiI 426 (477)
T KOG3713|consen 347 LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITII 426 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhH
Confidence 34445555666677777655322 567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 038674 256 TELYTQSRQNSFV 268 (343)
Q Consensus 256 ~~~~~~~~~~~~~ 268 (343)
.+-+.....+...
T Consensus 427 v~nF~~~y~~~k~ 439 (477)
T KOG3713|consen 427 VNNFSMYYSELKA 439 (477)
T ss_pred hhhHHHHHHHHHH
Confidence 8887765544433
No 7
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.46 E-value=3.4e-13 Score=129.36 Aligned_cols=74 Identities=26% Similarity=0.480 Sum_probs=65.0
Q ss_pred HHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 72 CFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~ 145 (343)
+.|+.|++.++.++.|...++|||++|||||||||++|+|..||+++...++.|+.++|+.+..+.+.+.+-..
T Consensus 362 lvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~ 435 (477)
T KOG3713|consen 362 LVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYS 435 (477)
T ss_pred HHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHH
Confidence 34666777777779999999999999999999999999999999999999999999999998888877765443
No 8
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.37 E-value=1e-12 Score=126.73 Aligned_cols=99 Identities=25% Similarity=0.312 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcc-----------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHH
Q 038674 178 KYKLVTATFILLVLIIAGIVFLSVVED-----------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTI 246 (343)
Q Consensus 178 ~~~~~~~~~~~~~~~~~g~~~~~~~e~-----------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~ 246 (343)
+..++....+-++.+++.+.+-++.|. -+|.||+||.++|+|||||||.+|.|+.||+++..+.++|+.
T Consensus 230 ~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiS 309 (654)
T KOG1419|consen 230 SKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGIS 309 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHH
Confidence 344555555544444455555555553 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038674 247 CLAQFFLYLTELYTQSRQNSFVKWVLTRQL 276 (343)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 276 (343)
+++...+.+.+-+..+-+++...+..+|++
T Consensus 310 FFALPAGILGSGfALKVQeq~RQKHf~rrr 339 (654)
T KOG1419|consen 310 FFALPAGILGSGFALKVQEQHRQKHFNRRR 339 (654)
T ss_pred HHhcccccccchhhhhhHHHHHHHHHHhhc
Confidence 999999999887765544444444444443
No 9
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.34 E-value=1.1e-12 Score=120.79 Aligned_cols=83 Identities=22% Similarity=0.339 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 038674 183 TATFILLVLIIAGIVFLSVVED------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLT 256 (343)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~~~e~------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~ 256 (343)
+++++++.++++++.+|....+ .+..|||||+++|||||||||++|.|..||++..++.+.|+..++..+..+.
T Consensus 364 LIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIV 443 (507)
T KOG1545|consen 364 LIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIV 443 (507)
T ss_pred HHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEE
Confidence 3444555555555555543222 5789999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHH
Q 038674 257 ELYTQSRQN 265 (343)
Q Consensus 257 ~~~~~~~~~ 265 (343)
+-+.--+.|
T Consensus 444 sNFnyFYhr 452 (507)
T KOG1545|consen 444 SNFNYFYHR 452 (507)
T ss_pred ecccceeec
Confidence 766544333
No 10
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.31 E-value=3.5e-12 Score=123.03 Aligned_cols=80 Identities=23% Similarity=0.408 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhhhc----ccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 038674 62 LVGYLGVGALCFFLIRHQ----IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAA 137 (343)
Q Consensus 62 l~~~l~~g~~~~~~~~~~----~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~ 137 (343)
-++.++.++.+.|+.|.+ ..+..+.+|.||+||..+|+|||||||.+|+|+.||+++..+.++|+.+|++..+.++
T Consensus 240 GFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILG 319 (654)
T KOG1419|consen 240 GFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILG 319 (654)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhccccccc
Confidence 344445566666677764 2445678999999999999999999999999999999999999999999999999888
Q ss_pred HHHH
Q 038674 138 DYLV 141 (343)
Q Consensus 138 ~~~~ 141 (343)
+-+.
T Consensus 320 SGfA 323 (654)
T KOG1419|consen 320 SGFA 323 (654)
T ss_pred chhh
Confidence 7654
No 11
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.26 E-value=1.8e-11 Score=118.56 Aligned_cols=106 Identities=25% Similarity=0.447 Sum_probs=86.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcc-------------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHH
Q 038674 176 KVKYKLVTATFILLVLIIAGIVFLSVVED-------------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWIL 242 (343)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~g~~~~~~~e~-------------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~ 242 (343)
+...++...+.+++..++.++.++++.|+ .+|++++||-++||+||||||++-.|..||+|.+++++
T Consensus 245 sssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil 324 (1103)
T KOG1420|consen 245 SSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFIL 324 (1103)
T ss_pred cchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHH
Confidence 34456777788889999999998888875 67999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCccee
Q 038674 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVS 293 (343)
Q Consensus 243 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~~~v~ 293 (343)
.|+++++..+..+.+++-.+ +...-+...+..+.|.+||
T Consensus 325 ~glamfasyvpeiielignr------------~kyggeyk~ehgkkhivvc 363 (1103)
T KOG1420|consen 325 GGLAMFASYVPEIIELIGNR------------KKYGGEYKAEHGKKHIVVC 363 (1103)
T ss_pred HHHHHHHhhhHHHHHHHccc------------cccCceeehhcCCeeEEEe
Confidence 99999998888888766533 2233444556667787777
No 12
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.26 E-value=6.1e-11 Score=114.71 Aligned_cols=83 Identities=23% Similarity=0.369 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 64 GYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEK 143 (343)
Q Consensus 64 ~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~ 143 (343)
..++.+.+.+++.++.+. +..+++.+|+||+++|+||+||||+.|.|+.||++++++++.|++++++.++.+...+.++
T Consensus 146 ~l~~~~~~g~~~~~~~f~-~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~~ 224 (393)
T PRK10537 146 SLLFYSTFGALYLGDGFS-PPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIRG 224 (393)
T ss_pred HHHHHHHHHHHHHccccC-cCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555665665444 3458999999999999999999999999999999999999999999999998887766554
Q ss_pred HHHH
Q 038674 144 QQLL 147 (343)
Q Consensus 144 ~~~~ 147 (343)
+.+.
T Consensus 225 ~l~~ 228 (393)
T PRK10537 225 NLKR 228 (393)
T ss_pred HHHH
Confidence 4433
No 13
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.18 E-value=1.9e-10 Score=121.92 Aligned_cols=56 Identities=34% Similarity=0.663 Sum_probs=52.6
Q ss_pred chhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 88 VLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEK 143 (343)
Q Consensus 88 ~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~ 143 (343)
|..|+||+++|+|||||||++|.|..+++++++++++|+.+++++++.+++.+.+.
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~ 306 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEG 306 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66689999999999999999999999999999999999999999999999987653
No 14
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.15 E-value=6.2e-12 Score=115.78 Aligned_cols=84 Identities=26% Similarity=0.513 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHH
Q 038674 54 RFRQVLLLLVGYLGVGALCF----FLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALV 129 (343)
Q Consensus 54 ~~~~~~~~l~~~l~~g~~~~----~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~ 129 (343)
+++.+.+ ++.++++|.+.| |+.|.+.+++.+.+..|||||+++|||||||||.+|.|..||++..++++.|+..+
T Consensus 357 SmrElgL-LIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTi 435 (507)
T KOG1545|consen 357 SMRELGL-LIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTI 435 (507)
T ss_pred HHHHHHH-HHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEe
Confidence 4444433 444555666655 55566667788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 038674 130 GLILGKAAD 138 (343)
Q Consensus 130 ~~~~~~~~~ 138 (343)
++.+..+.+
T Consensus 436 ALPVPVIVs 444 (507)
T KOG1545|consen 436 ALPVPVIVS 444 (507)
T ss_pred cccccEEEe
Confidence 887766654
No 15
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.06 E-value=1.2e-10 Score=108.22 Aligned_cols=87 Identities=24% Similarity=0.413 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHH
Q 038674 54 RFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLIL 133 (343)
Q Consensus 54 ~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~ 133 (343)
.+..+++.+...+++.+.+.++.|+..+..++.+...||||+++||||.||||.+|.|..||+|..++.+.|+.++++.+
T Consensus 323 ELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPV 402 (632)
T KOG4390|consen 323 ELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPV 402 (632)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccc
Confidence 45556666666777777777778888888888999999999999999999999999999999999999999999988866
Q ss_pred HHHHHHH
Q 038674 134 GKAADYL 140 (343)
Q Consensus 134 ~~~~~~~ 140 (343)
..+.+.+
T Consensus 403 PvIVSNF 409 (632)
T KOG4390|consen 403 PVIVSNF 409 (632)
T ss_pred cEEEech
Confidence 5554433
No 16
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.05 E-value=7.2e-09 Score=109.99 Aligned_cols=57 Identities=26% Similarity=0.445 Sum_probs=52.3
Q ss_pred ccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 207 FVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSR 263 (343)
Q Consensus 207 ~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (343)
|..|+||+++|+|||||||++|.+..+++|+++++++|++++++.++.+++++.+..
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~ 307 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT 307 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344799999999999999999999999999999999999999999999999876543
No 17
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=99.02 E-value=2.2e-09 Score=98.00 Aligned_cols=85 Identities=26% Similarity=0.461 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhc----------------------------------------------ccCccce
Q 038674 177 VKYKLVTATFILLVLIIAGIVFLSVVE----------------------------------------------DLKFVDA 210 (343)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~g~~~~~~~e----------------------------------------------~~~~~da 210 (343)
...+...++.+.+.++++|+.+|...| .|.|.-|
T Consensus 5 qnvR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~Ga 84 (350)
T KOG4404|consen 5 QNVRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGA 84 (350)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcc
Confidence 345556667788899999999998765 1899999
Q ss_pred eeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 211 LYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQ 261 (343)
Q Consensus 211 ~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~ 261 (343)
|||+.+.+||||||-..|.|.+||+|+++|.++|+.+--.++..+.+-+..
T Consensus 85 FYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt 135 (350)
T KOG4404|consen 85 FYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNT 135 (350)
T ss_pred eEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988888888775543
No 18
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.97 E-value=7e-11 Score=109.84 Aligned_cols=78 Identities=27% Similarity=0.382 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 038674 183 TATFILLVLIIAGIVFLSVVED------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLT 256 (343)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~~~e~------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~ 256 (343)
+.+.+...++++++++|+...+ .+...||||+++||||.||||++|.|..||+|..++.+.|+.+++..+..+.
T Consensus 327 LlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIV 406 (632)
T KOG4390|consen 327 LLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIV 406 (632)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEE
Confidence 3444556667778888776554 4678899999999999999999999999999999999999999998887766
Q ss_pred HHHH
Q 038674 257 ELYT 260 (343)
Q Consensus 257 ~~~~ 260 (343)
+-+.
T Consensus 407 SNFS 410 (632)
T KOG4390|consen 407 SNFS 410 (632)
T ss_pred echh
Confidence 6554
No 19
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=98.93 E-value=3e-09 Score=103.65 Aligned_cols=60 Identities=27% Similarity=0.497 Sum_probs=56.1
Q ss_pred cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 205 LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQ 264 (343)
Q Consensus 205 ~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 264 (343)
|+|.+|+||+++++||||||+++|.|..||+++++|.++|+.++...++.+...+.....
T Consensus 114 W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 114 WSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred eecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988887765543
No 20
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.86 E-value=2.1e-09 Score=104.35 Aligned_cols=101 Identities=22% Similarity=0.433 Sum_probs=82.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc------ccCCCCCCchhhhhhhhhhhcccccCccccCCchhhH
Q 038674 43 LESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQ------IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKL 116 (343)
Q Consensus 43 ~~~i~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~------~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~ 116 (343)
.-.+++....+++..++.+++..++.++...++.|+. +.+++-.+|+++.||-++||+||||||++..|..||.
T Consensus 238 ylnilktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrl 317 (1103)
T KOG1420|consen 238 YLNILKTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRL 317 (1103)
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHH
Confidence 3344555555567777777777888888888888763 3445557899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 117 LACVYVFSGMALVGLILGKAADYLVEK 143 (343)
Q Consensus 117 ~~~~~~l~Gi~~~~~~~~~~~~~~~~~ 143 (343)
|.+++++.|+++++-.+..+.+.+.++
T Consensus 318 fmvffil~glamfasyvpeiielignr 344 (1103)
T KOG1420|consen 318 FMVFFILGGLAMFASYVPEIIELIGNR 344 (1103)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHccc
Confidence 999999999999999999888877553
No 21
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.64 E-value=1.9e-07 Score=95.62 Aligned_cols=55 Identities=22% Similarity=0.463 Sum_probs=52.5
Q ss_pred chhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 88 VLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE 142 (343)
Q Consensus 88 ~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~ 142 (343)
|..|+||+++|+||+|||+.+|.++..++|++++|++|+.++|++|+++..++.+
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs 349 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQS 349 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHH
Confidence 6679999999999999999999999999999999999999999999999988865
No 22
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.61 E-value=2.4e-08 Score=102.13 Aligned_cols=55 Identities=33% Similarity=0.495 Sum_probs=50.8
Q ss_pred cceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 208 VDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQS 262 (343)
Q Consensus 208 ~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 262 (343)
.-|+||++.|+||+||||..|.+..-++|+++++++|++++|+++|.++.++...
T Consensus 296 ~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ 350 (727)
T KOG0498|consen 296 VYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL 350 (727)
T ss_pred HHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence 3479999999999999999999999999999999999999999999999887643
No 23
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=98.49 E-value=2.4e-06 Score=83.11 Aligned_cols=82 Identities=20% Similarity=0.312 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-----ccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 038674 181 LVTATFILLVLIIAGIVFLSVVE-----DLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYL 255 (343)
Q Consensus 181 ~~~~~~~~~~~~~~g~~~~~~~e-----~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~ 255 (343)
+.+.+..++++++.|...+...+ ..+.+.++||.++|++||||||.+|.-++..+..++.|.++++++-.-+..+
T Consensus 187 l~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l 266 (1087)
T KOG3193|consen 187 LLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDEL 266 (1087)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHH
Confidence 33344444455555554444333 2789999999999999999999999999999999999888887777666666
Q ss_pred HHHHHHH
Q 038674 256 TELYTQS 262 (343)
Q Consensus 256 ~~~~~~~ 262 (343)
+..+.++
T Consensus 267 ~~tw~er 273 (1087)
T KOG3193|consen 267 GQTWSER 273 (1087)
T ss_pred HHHHHHH
Confidence 6555543
No 24
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.42 E-value=8e-06 Score=78.25 Aligned_cols=83 Identities=19% Similarity=0.310 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--------cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHH
Q 038674 181 LVTATFILLVLIIAGIVFLSVVED--------LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFF 252 (343)
Q Consensus 181 ~~~~~~~~~~~~~~g~~~~~~~e~--------~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~ 252 (343)
........+.++++.+.++...|. .+|.+++|+..+|+.+|||||++|.|..||.+++...++|.++.+.++
T Consensus 254 g~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallv 333 (489)
T KOG3684|consen 254 GTVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLV 333 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHH
Confidence 344445556677777777777664 358999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 038674 253 LYLTELYTQSR 263 (343)
Q Consensus 253 ~~~~~~~~~~~ 263 (343)
+.++.-+...+
T Consensus 334 AvisRKLeLt~ 344 (489)
T KOG3684|consen 334 AVIARKLELTK 344 (489)
T ss_pred HHHHHHHHHHH
Confidence 98887665443
No 25
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.31 E-value=2.9e-06 Score=81.26 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-ccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 038674 57 QVLLLLVGYLGVGALCFFLIRHQ-IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGK 135 (343)
Q Consensus 57 ~~~~~l~~~l~~g~~~~~~~~~~-~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~ 135 (343)
.+++..+.++++.+..+..-|.+ ...+...+|.++.|+..+|+.++||||++|.|..||.++++..++|..+.+++++.
T Consensus 256 vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAv 335 (489)
T KOG3684|consen 256 VLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAV 335 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHH
Confidence 33444444555555555444542 23334467999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 038674 136 AADYLV 141 (343)
Q Consensus 136 ~~~~~~ 141 (343)
++.-+.
T Consensus 336 isRKLe 341 (489)
T KOG3684|consen 336 IARKLE 341 (489)
T ss_pred HHHHHH
Confidence 886553
No 26
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.27 E-value=2.6e-06 Score=83.56 Aligned_cols=57 Identities=26% Similarity=0.588 Sum_probs=52.4
Q ss_pred CCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 86 NGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE 142 (343)
Q Consensus 86 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~ 142 (343)
.-|..|+||+++.+||||||++.|.|...|+|.+..|++|-.+.+.+++.+...+.+
T Consensus 422 S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQ 478 (971)
T KOG0501|consen 422 SAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQ 478 (971)
T ss_pred ceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 458899999999999999999999999999999999999999999999988876643
No 27
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.27 E-value=3.3e-06 Score=80.10 Aligned_cols=57 Identities=25% Similarity=0.427 Sum_probs=48.0
Q ss_pred CCchhhhhhhhhhhcccccCc--cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 86 NGVLDSIYFCIVTMTTVGYGD--LVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE 142 (343)
Q Consensus 86 ~~~~~a~y~~~~t~tTvGyGd--~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~ 142 (343)
.+|.+||+|++.|.||||||. +.|..+.+-++..+-+++|+.+.+++++.+-..+.+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999998 678889999999999999999999999988776654
No 28
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.78 E-value=1.8e-05 Score=77.82 Aligned_cols=56 Identities=25% Similarity=0.533 Sum_probs=51.5
Q ss_pred ccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 207 FVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQS 262 (343)
Q Consensus 207 ~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 262 (343)
|..++||++.++||||||.+.|.|+.-|+|++..+++|-.+.+.+++-++..+.+.
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM 479 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQM 479 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999888776644
No 29
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.74 E-value=8.7e-05 Score=72.55 Aligned_cols=63 Identities=29% Similarity=0.471 Sum_probs=50.4
Q ss_pred CCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 82 GEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQ 144 (343)
Q Consensus 82 ~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~ 144 (343)
++...+.+.++||.++|++||||||.+|.-+..++..++.+.+.+.++.--+..++.--.+++
T Consensus 212 ~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~tw~erq 274 (1087)
T KOG3193|consen 212 RGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQTWSERQ 274 (1087)
T ss_pred cCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 334478999999999999999999999999999998888877777777666666665444443
No 30
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.74 E-value=1.5e-05 Score=75.67 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=46.9
Q ss_pred cCccceeeEEEeEeeecccCC--cccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 205 LKFVDALYCVCSTITTLGYGD--MSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSR 263 (343)
Q Consensus 205 ~~~~da~y~~~~t~tTvGyGD--~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (343)
-+|.+||+||+-|.||||||. +.|..+.+-++..+-.++|+.+.+.++|.+..-+...+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~ 143 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPK 143 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 478999999999999999999 55777788888999999999999999988887665443
No 31
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.12 E-value=0.0025 Score=62.07 Aligned_cols=56 Identities=21% Similarity=0.382 Sum_probs=50.2
Q ss_pred chhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 88 VLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQ 144 (343)
Q Consensus 88 ~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~ 144 (343)
|.-|+|||.-|+||+| --..|.|.....|.++=.++|+.+||.+++.+++.+.+..
T Consensus 184 Y~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmn 239 (536)
T KOG0500|consen 184 YLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMN 239 (536)
T ss_pred HHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhh
Confidence 5569999999999998 4568999999999999999999999999999999887643
No 32
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=97.07 E-value=0.00098 Score=64.95 Aligned_cols=177 Identities=15% Similarity=0.225 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHhhhc--ccCCCCCCchhhhhhhhhhhcccccC--ccccCCchhhHHHHHHHHHHHHHHHH--HHHH
Q 038674 62 LVGYLGVGALCFFLIRHQ--IKGEKTNGVLDSIYFCIVTMTTVGYG--DLVPHSTLAKLLACVYVFSGMALVGL--ILGK 135 (343)
Q Consensus 62 l~~~l~~g~~~~~~~~~~--~~~~~~~~~~~a~y~~~~t~tTvGyG--d~~p~t~~gr~~~~~~~l~Gi~~~~~--~~~~ 135 (343)
.++++..+.+.+++.+.+ ..+.+.....++.++...+++|.||. |..--++..+++.++.|++|-.--+. -+-.
T Consensus 204 ~~~l~~~~~i~~~l~~~~~~~~~~~~~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK~ 283 (390)
T TIGR00933 204 TFLLLAIGFILFLLLERGNTLYSYSFGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKT 283 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchHH
Confidence 333444555556555532 11122245788999999999999995 55555777888888888877332111 0000
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCccceeeEEE
Q 038674 136 AADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVC 215 (343)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~lr~le~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~ 215 (343)
..-.+.-+......|+..+.......+.+++... +.........+++.+..++++.... ...+.++.|+++=++
T Consensus 284 ~r~~vl~~~~~~~~~~~~~~~~v~~~~i~~~~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fe~~ 357 (390)
T TIGR00933 284 TTFAILLKQVYREIRRGIHPRIIFSRRIGGKTID-----KAILISVWSFFLVFALIFLLSILEL-ISSGYDFLTSLFEVV 357 (390)
T ss_pred HHHHHHHHHHHHHHHccCCCceEEeEEECCeehH-----HHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHHHHHHHHH
Confidence 0000000011111111111111100001111110 0111111111111111122222211 123688999999899
Q ss_pred eEeeecccCCc---ccCCccchhHHHHHHHHH
Q 038674 216 STITTLGYGDM---SFSTRGGRFFAVFWILSG 244 (343)
Q Consensus 216 ~t~tTvGyGD~---~p~t~~gr~~~~~~~~~g 244 (343)
.+++|||.+== ...++.+|++.++.|++|
T Consensus 358 Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 358 SAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred HHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 99999986542 335678899888887765
No 33
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=97.06 E-value=0.0065 Score=52.13 Aligned_cols=51 Identities=27% Similarity=0.497 Sum_probs=41.6
Q ss_pred CCCchhhhhhhhhhhcccccCccccC-----CchhhHHHH-HHHHHHHHHHHHHHHH
Q 038674 85 TNGVLDSIYFCIVTMTTVGYGDLVPH-----STLAKLLAC-VYVFSGMALVGLILGK 135 (343)
Q Consensus 85 ~~~~~~a~y~~~~t~tTvGyGd~~p~-----t~~gr~~~~-~~~l~Gi~~~~~~~~~ 135 (343)
+.++..|+|+.+.++||.||||..|. +..+.++.+ +..+.++.+++++++.
T Consensus 143 f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav 199 (200)
T PF00520_consen 143 FDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV 199 (200)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence 36899999999999999999999997 788888884 4444556777777765
No 34
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.0091 Score=56.58 Aligned_cols=125 Identities=17% Similarity=0.262 Sum_probs=75.5
Q ss_pred cccceeeeccCcccc--cccc-cchhhHHHHHhhhhHHHHHHHHHHH-----HHHHHHHHHHHHHhh--hcccCC-----
Q 038674 19 SSKPVDYSNLNEPME--QNDK-KSLLPLESALMSQEEIRFRQVLLLL-----VGYLGVGALCFFLIR--HQIKGE----- 83 (343)
Q Consensus 19 ~s~p~~~s~l~~~~~--~~~~-~~~~~~~~i~~~~~~~~~~~~~~~l-----~~~l~~g~~~~~~~~--~~~~~~----- 83 (343)
..++.+-...|.... .+.. ...+-+.+++...-...|+..++++ +.++++|.++|.+.. ++.+..
T Consensus 23 r~r~R~v~K~G~cNV~~~nv~~~~~rYl~DifTTlVD~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~ 102 (400)
T KOG3827|consen 23 RKRRRFVKKDGHCNVQFKNVPRKRLRYLQDIFTTLVDLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGEN 102 (400)
T ss_pred hhhhhhcccCCceeEEEcCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcC
Confidence 445555555554443 2222 2334455555554433444333332 234444555444433 222211
Q ss_pred ------CCCCchhhhhhhhhhhcccccCccccC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 84 ------KTNGVLDSIYFCIVTMTTVGYGDLVPH--STLAKLLACVYVFSGMALVGLILGKAADYLVEK 143 (343)
Q Consensus 84 ------~~~~~~~a~y~~~~t~tTvGyGd~~p~--t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~ 143 (343)
+..+|..||-|++-|=||||||--.+. =|.+-+..++-+++|+.+=+.+++.+..-+.+.
T Consensus 103 ~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP 170 (400)
T KOG3827|consen 103 HTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP 170 (400)
T ss_pred CCcceeeccchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 125899999999999999999987665 467788888888999998888888877666543
No 35
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=96.75 E-value=0.01 Score=59.49 Aligned_cols=173 Identities=16% Similarity=0.205 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccC---------CCCCC------chhhhhhhhhhhcccc-cCccc-cCCchhhHH
Q 038674 55 FRQVLLLLVGYLGVGALCFFLIRHQIKG---------EKTNG------VLDSIYFCIVTMTTVG-YGDLV-PHSTLAKLL 117 (343)
Q Consensus 55 ~~~~~~~l~~~l~~g~~~~~~~~~~~~~---------~~~~~------~~~a~y~~~~t~tTvG-yGd~~-p~t~~gr~~ 117 (343)
-+.++....+.++.|.+.+++.|..-++ +.... ...|+|-+++|-||-| +-.+. -.++.+..+
T Consensus 281 ~kivl~~~~iL~i~g~~~~~~~E~~~np~l~~l~~~gn~egKE~RfG~~~salF~svTtrtTaG~fNsm~dsltp~~~lv 360 (559)
T PRK05482 281 GWAILAAMLVLFLAGLAVTMWAELQGNPALAALGIDGNMEGKEVRFGIAASALFAVVTTAASTGAVNAMHDSLTPLGGLV 360 (559)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHccCCcchhhccCCCCcccchhhhhhHHHHHHHHHHhhhhcchHHHHHHhhccHHHHH
Confidence 4455556666677788877777743111 11113 5688888888887888 65543 347888999
Q ss_pred HHHHHHHH-HH-------HHH-HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCcchhhhhhhhhhhhhhhHHHHHHHHH
Q 038674 118 ACVYVFSG-MA-------LVG-LILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFIL 188 (343)
Q Consensus 118 ~~~~~l~G-i~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~lr~le~~~~~~~~~~~~~~~ 188 (343)
.++.|++| .. +.. .....+.-++.. .++.+ .++-.-|+++.+..+......+ +.
T Consensus 361 ~m~lMfIG~~~pGGtGgGl~~~~tfaIL~vfi~g--------lmvGr--------tpe~~gRkI~~~eik~A~~vil-v~ 423 (559)
T PRK05482 361 PLLNMQLGEVIFGGVGSGLYGMLVFVILAVFIAG--------LMVGR--------TPEYLGKKIEAREMKLAALAIL-VH 423 (559)
T ss_pred HHHHHHhCCCCCccchHhHHHHHHHHHHHHHHHh--------HccCC--------CCeEEccccCHHHHHHHHHHHH-HH
Confidence 99999997 32 222 111111111110 01110 1111223333333333332222 22
Q ss_pred HHHHHHHH-HHHHh-------hcc--cCccceeeEEEeEeeecc--cCCcccCCccchhHHHHHHHHH
Q 038674 189 LVLIIAGI-VFLSV-------VED--LKFVDALYCVCSTITTLG--YGDMSFSTRGGRFFAVFWILSG 244 (343)
Q Consensus 189 ~~~~~~g~-~~~~~-------~e~--~~~~da~y~~~~t~tTvG--yGD~~p~t~~gr~~~~~~~~~g 244 (343)
.+++++++ +.... .|. ..+.|.+|=.+....|+| +|++.+.|+.+++..++.|++|
T Consensus 424 ~~lVl~~taial~~~~~~~~~~n~g~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iG 491 (559)
T PRK05482 424 PLLVLVGTALALATPAGRAGISNPGPHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLG 491 (559)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 33333343 22222 232 578899998888888998 5668889999999988888865
No 36
>PRK10750 potassium transporter; Provisional
Probab=96.46 E-value=0.0072 Score=60.41 Aligned_cols=182 Identities=13% Similarity=0.126 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccC--ccccCCchhhHHHHHHHHHHHHHHHH-
Q 038674 55 FRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYG--DLVPHSTLAKLLACVYVFSGMALVGL- 131 (343)
Q Consensus 55 ~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyG--d~~p~t~~gr~~~~~~~l~Gi~~~~~- 131 (343)
++..+.+.++..+++++.++..+. .++....+.++++.+...+||.||. |..--++..+.+.++.|++|-.--+.
T Consensus 274 ~r~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~GSTa 351 (483)
T PRK10750 274 FRMFIGVQLTLVVICTLVLWFHNV--YSSALMTLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTG 351 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCcccCc
Confidence 444444444445555554444221 1111134667777777778999996 44444555677777777765332211
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhccccCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccCccce
Q 038674 132 -ILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDA 210 (343)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~lr~le~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~~~~~da 210 (343)
-+-...-.+.-+......|+....+....-+.+. |+++.+.. .+....+++.+..+.+++++. ..++.+..+|
T Consensus 352 GGIKv~R~~vl~~~~~~~l~~~~~P~~V~~v~~~g----r~i~~~~v-~~v~~~~~ly~~~~~~~~~~l-~~~g~~~~sA 425 (483)
T PRK10750 352 GGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGN----RALPERIL-EAVWGFFSAYALVFIVSMLAI-IATGVDDFSA 425 (483)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCceeeeeECC----EECCHHHH-HHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHH
Confidence 1111111111111111111111101110000011 11111111 222223333344444555544 5567778888
Q ss_pred eeEEEeEeeecccCC--c----ccCCccchhHHHHHHHHH
Q 038674 211 LYCVCSTITTLGYGD--M----SFSTRGGRFFAVFWILSG 244 (343)
Q Consensus 211 ~y~~~~t~tTvGyGD--~----~p~t~~gr~~~~~~~~~g 244 (343)
+-=+..++++||.|= . ...++.+|++.++.|++|
T Consensus 426 ~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllG 465 (483)
T PRK10750 426 FASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFG 465 (483)
T ss_pred HHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHH
Confidence 876677888887543 3 234578899988888865
No 37
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.43 E-value=0.012 Score=57.34 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=46.7
Q ss_pred eeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 210 ALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSR 263 (343)
Q Consensus 210 a~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (343)
++|||..|+||+| --..|.+...-.|.++=.++|+.++|..+|.+.+++....
T Consensus 187 S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmn 239 (536)
T KOG0500|consen 187 SLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMN 239 (536)
T ss_pred HHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhh
Confidence 7999999999998 4456788888899999999999999999999999887654
No 38
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=96.24 E-value=0.021 Score=55.70 Aligned_cols=146 Identities=14% Similarity=0.206 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCcccc------CCchhhHHHHHHHHHHHHHHHHHHHH
Q 038674 62 LVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVP------HSTLAKLLACVYVFSGMALVGLILGK 135 (343)
Q Consensus 62 l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p------~t~~gr~~~~~~~l~Gi~~~~~~~~~ 135 (343)
-++..+++++.++..+ . .++++|++.++++++|-||.-... .++...+..++.+++|-.-+......
T Consensus 110 y~~lt~l~~~~~~~~g------~-~~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF~v~~~~ 182 (390)
T TIGR00933 110 YLLGTILLAVRFVLTG------W-MPLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGFTVHYDV 182 (390)
T ss_pred HHHHHHHHHHHHHHhc------c-hHHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3334444445555443 1 468899999999999999854332 23335566666666654333333211
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc---------cC
Q 038674 136 AADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVED---------LK 206 (343)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~lr~le~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~---------~~ 206 (343)
.. ..+ +..++. .++ .+..+. +.+.++..+.+.+...|. ..
T Consensus 183 ~~----------~~~--~~~~~l--------------~~~-~~~~~~----~~~~l~~~~~i~~~l~~~~~~~~~~~~~~ 231 (390)
T TIGR00933 183 YL----------LLR--KRVFKL--------------SLD-TKVRLF----VTFLLLAIGFILFLLLERGNTLYSYSFGA 231 (390)
T ss_pred HH----------Hcc--cCccee--------------ecC-ccHHHH----HHHHHHHHHHHHHHHHHHcccccCCCHHH
Confidence 11 000 000001 000 011111 122222334444444431 23
Q ss_pred ccceeeEEEeEeeecccCCcc--cCCccchhHHHHHHHHHH
Q 038674 207 FVDALYCVCSTITTLGYGDMS--FSTRGGRFFAVFWILSGT 245 (343)
Q Consensus 207 ~~da~y~~~~t~tTvGyGD~~--p~t~~gr~~~~~~~~~g~ 245 (343)
..++.++.+.+.+|.||.-.. --++..+++.++.+++|-
T Consensus 232 ~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg 272 (390)
T TIGR00933 232 LLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGG 272 (390)
T ss_pred HHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcC
Confidence 678889999999999987543 234556777777777663
No 39
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.87 E-value=0.048 Score=54.54 Aligned_cols=56 Identities=23% Similarity=0.465 Sum_probs=50.4
Q ss_pred CCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 86 NGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE 142 (343)
Q Consensus 86 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~ 142 (343)
..|..++||+.-|++||| |...|.+...-+|-.+--+.|+.+|+++++.+-+.+..
T Consensus 402 n~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 402 NEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred CceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578899999999999999 89999999888888888889999999999998887764
No 40
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=95.82 E-value=0.056 Score=56.34 Aligned_cols=122 Identities=11% Similarity=0.215 Sum_probs=77.5
Q ss_pred cCcccccceeeeccCcccccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cccC
Q 038674 15 QPLLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRH------------QIKG 82 (343)
Q Consensus 15 ~~l~~s~p~~~s~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~------------~~~~ 82 (343)
+....|.||+.+|+++++..... -.....++.......|..++++++ ++....+|.+... .-++
T Consensus 529 evVDFSvPFveTgIsVmV~rsng--tvspsAFLePfs~svWVmmFVm~l--ivaai~vFlFEy~SPvgyn~~l~~gkkpg 604 (1258)
T KOG1053|consen 529 EVVDFSVPFVETGISVMVARSNG--TVSPSAFLEPFSPSVWVMMFVMCL--IVAAITVFLFEYFSPVGYNRNLANGKKPG 604 (1258)
T ss_pred ccccccccccccceEEEEEecCC--ccCchhhcCCcchHHHHHHHHHHH--HHHHHHHHHHhhcCcccccccccCCCCCC
Confidence 46689999999999999853322 223455566555522222222222 2222223322211 1123
Q ss_pred CCCCCchhhhhhhhhhhcccccCcccc----CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 83 EKTNGVLDSIYFCIVTMTTVGYGDLVP----HSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQ 144 (343)
Q Consensus 83 ~~~~~~~~a~y~~~~t~tTvGyGd~~p----~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~ 144 (343)
.+..++..|+|.+...+ |++.+| +...+|+...+|+++++.+++..+++++.++...+
T Consensus 605 gp~FtigkaiwllwaLv----FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE~ 666 (1258)
T KOG1053|consen 605 GPSFTIGKAIWLLWALV----FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEE 666 (1258)
T ss_pred CcceehhhHHHHHHHHH----hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44578889999776655 456555 45679999999999999999999999999887644
No 41
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=95.79 E-value=0.072 Score=50.68 Aligned_cols=58 Identities=22% Similarity=0.218 Sum_probs=44.5
Q ss_pred cCccceeeEEEeEeeecccCCcccCC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 205 LKFVDALYCVCSTITTLGYGDMSFST--RGGRFFAVFWILSGTICLAQFFLYLTELYTQS 262 (343)
Q Consensus 205 ~~~~da~y~~~~t~tTvGyGD~~p~t--~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 262 (343)
-+|..||-|++-|=||||||--++.. |.+-+..++-.++|+.+-+..+|.+..-+...
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP 170 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP 170 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 35778899999999999999988765 45566677778888888887777766544433
No 42
>PRK10750 potassium transporter; Provisional
Probab=95.71 E-value=0.07 Score=53.43 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhhhcccccCccc---c--CCchhhHHHHHHHHHH
Q 038674 57 QVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLV---P--HSTLAKLLACVYVFSG 125 (343)
Q Consensus 57 ~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~a~y~~~~t~tTvGyGd~~---p--~t~~gr~~~~~~~l~G 125 (343)
.+..+.+.+.+++++.+++.. .+++||+..++++++|-||.-.. + .++.-.+.+++++++|
T Consensus 184 ~l~~iY~~lT~~~~~ll~~~G--------m~~fdAi~ha~saisTgGFs~~~~si~~~~~~~i~~v~~~~milg 249 (483)
T PRK10750 184 TLWLIYVLLTVACALALWFAG--------MDAFDAIGHSFSTIAIGGFSTHDASIGYFDSPTINTIIAIFLLIS 249 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHhccCcCCCccccccccCHHHHHHHHHHHHHH
Confidence 344444455555555555442 67999999999999999984221 1 1233344555555544
No 43
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=95.45 E-value=0.039 Score=55.35 Aligned_cols=120 Identities=21% Similarity=0.282 Sum_probs=85.4
Q ss_pred cccccceeeeccCcccccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----------ccCCCC
Q 038674 17 LLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQ-----------IKGEKT 85 (343)
Q Consensus 17 l~~s~p~~~s~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~-----------~~~~~~ 85 (343)
.-.|.||-+-|+.+......+++ .+..+++.+.. .++.+ +.+...+++..+|.+.... -+.+..
T Consensus 537 ieFskPfkYqGitILeKk~~r~S--tl~SFlQPfqs-tLW~l--v~~SVhvVal~lYlLDrfSPFgRFk~~ds~~~ee~a 611 (993)
T KOG4440|consen 537 IEFSKPFKYQGITILEKKEIRRS--TLDSFLQPFQS-TLWLL--VGLSVHVVALMLYLLDRFSPFGRFKVNDSEEEEEDA 611 (993)
T ss_pred eeccCcccccceEEEeeCCCCCc--hHHHHHhHHHH-HHHHH--HHHHHHHHHHHHHHHHhcCcccceeeccCccchhhh
Confidence 45789999989888765554443 45555555555 33322 1233444455555554321 112234
Q ss_pred CCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 86 NGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLV 141 (343)
Q Consensus 86 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~ 141 (343)
.++..|.||+.-.+..-|-|+-+|.+-..|++.++|+-+.+.+++-..++++.++.
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 68899999999999999999999999999999999999998888888888887764
No 44
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=95.38 E-value=0.011 Score=56.97 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=64.0
Q ss_pred CCchhhhhhhhhhhcccccC--ccccCCchhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 038674 86 NGVLDSIYFCIVTMTTVGYG--DLVPHSTLAKLLACVYVFSGMALVGLI--LGKAADYLVEKQQLLLVKAMYNYENASAG 161 (343)
Q Consensus 86 ~~~~~a~y~~~~t~tTvGyG--d~~p~t~~gr~~~~~~~l~Gi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (343)
.....+.++...+.+|.||. |+.--++..+++.++.|++|-.-.+.. +....-.+.-+..+...+.....+ .
T Consensus 175 ~~~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~gSTaGGiK~~r~~il~~~~~~~~~~~~p~~-~--- 250 (354)
T PF02386_consen 175 GSKRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSPGSTAGGIKITRFAILLKSIREIKRLIHPGA-V--- 250 (354)
T ss_dssp HHHHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-TTSS--SS-HHHHHHHHHHHHHHHHHH-SSS-----
T ss_pred HHHHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCccccccCCcceehhhHHHhhHHHHHHHhcCCC-c---
Confidence 34456778888899999996 444446667887777777663322211 000000000000011111111110 0
Q ss_pred Ccchhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccC-ccceeeEEEeEeeecccCCcc--c-CCcc---c
Q 038674 162 SVSAAEVL-KDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLK-FVDALYCVCSTITTLGYGDMS--F-STRG---G 233 (343)
Q Consensus 162 ~~~~~e~l-r~le~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~~~-~~da~y~~~~t~tTvGyGD~~--p-~t~~---g 233 (343)
.+.... |+++++.. .+....+.+.++.+++++..+...+... +.|+++=++..++|||.+=-. | .+.. +
T Consensus 251 --~~~~~~~r~i~~~~v-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~ 327 (354)
T PF02386_consen 251 --SPVRFNGRRISEQTV-RKAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFS 327 (354)
T ss_dssp ------SSS---TTSHH-HHHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHH
T ss_pred --cceeecceeechhhh-hhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHH
Confidence 111111 11111111 1222233344455556666666655544 689999899999999854332 3 2334 7
Q ss_pred hhHHHHHHHHH
Q 038674 234 RFFAVFWILSG 244 (343)
Q Consensus 234 r~~~~~~~~~g 244 (343)
|++.++.|++|
T Consensus 328 K~vli~~M~~G 338 (354)
T PF02386_consen 328 KLVLIFLMLLG 338 (354)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88887777765
No 45
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=95.25 E-value=0.024 Score=46.78 Aligned_cols=68 Identities=10% Similarity=0.186 Sum_probs=48.8
Q ss_pred CCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038674 86 NGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYN 154 (343)
Q Consensus 86 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (343)
.++.+++|+++.+++. +-++..|.+..+|++.++|.++++.+.+...+.+.+.+...+.+..++.+++
T Consensus 43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~d 110 (148)
T PF00060_consen 43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKYEPPIDSLED 110 (148)
T ss_dssp HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHTSS-SSHHH
T ss_pred ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCCCCHHH
Confidence 4677899999888776 5567999999999999999999999999999999998876655433333333
No 46
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.21 E-value=0.097 Score=52.42 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=47.4
Q ss_pred ccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 204 DLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYT 260 (343)
Q Consensus 204 ~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~ 260 (343)
|-.|+-++||++-|++||| |...|.+..--+|..+=-+.|+.+++.+++.+-+.+.
T Consensus 401 Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~ 456 (815)
T KOG0499|consen 401 GNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIG 456 (815)
T ss_pred CCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3579999999999999999 8888888777777777677899999999998877665
No 47
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.16 E-value=0.13 Score=51.66 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCccceeeEEEeEeeecccCC--cccCCccc------hhHHHHHHHHH
Q 038674 184 ATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGD--MSFSTRGG------RFFAVFWILSG 244 (343)
Q Consensus 184 ~~~~~~~~~~~g~~~~~~~e~~~~~da~y~~~~t~tTvGyGD--~~p~t~~g------r~~~~~~~~~g 244 (343)
.+++.+++++++++.....+.-++.|+++=++.++.|||.|= ..|.+..+ |+..++.|+.|
T Consensus 402 ~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~G 470 (499)
T COG0168 402 FFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIG 470 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhh
Confidence 344445555666666655554479999999999999999754 33334444 77766666654
No 48
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=95.01 E-value=0.052 Score=46.45 Aligned_cols=50 Identities=26% Similarity=0.357 Sum_probs=38.8
Q ss_pred cCccceeeEEEeEeeecccCCcccC-----CccchhHH-HHHHHHHHHHHHHHHHH
Q 038674 205 LKFVDALYCVCSTITTLGYGDMSFS-----TRGGRFFA-VFWILSGTICLAQFFLY 254 (343)
Q Consensus 205 ~~~~da~y~~~~t~tTvGyGD~~p~-----t~~gr~~~-~~~~~~g~~~~~~~~~~ 254 (343)
.++..++|+.+.++||.|+||..|. +..+.++. .+.++.++.+++.+++.
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav 199 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV 199 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence 4678899999999999999999997 66777877 44444555666666654
No 49
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=94.73 E-value=0.082 Score=55.09 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=86.5
Q ss_pred CcCcccccceeeeccCcccccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccc------CCCCC
Q 038674 14 GQPLLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRH-QIK------GEKTN 86 (343)
Q Consensus 14 ~~~l~~s~p~~~s~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~-~~~------~~~~~ 86 (343)
......|.||...++.+.......... ...++..... .++ +.+++.+++++.++|.+... ..+ ....|
T Consensus 306 ~~~vdfT~p~~~~~~~i~~~~~~~~~~--~~~fl~Pf~~-~vW--~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (656)
T KOG1052|consen 306 SKYVDFTIPYLQFGIVIIVRKPDSRSK--LWNFLAPFSP-EVW--LLILASLLLVGLLLWILERLSPYELPPRQIVTSLF 380 (656)
T ss_pred cccEEeccceEeccEEEEEEecCCccc--ceEEecCCcH-HHH--HHHHHHHHHHHHHHHHHhccccccCCccccceeEe
Confidence 345688999999999999887666654 3444444433 222 33344455556665555441 111 12346
Q ss_pred CchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 87 GVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQ 144 (343)
Q Consensus 87 ~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~ 144 (343)
+...++|+++.++..-|-+ ..|.+..+|++..+|.++++.+.+...+.+++.+...+
T Consensus 381 ~~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~~ 437 (656)
T KOG1052|consen 381 SLLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVPR 437 (656)
T ss_pred ecccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6667788888888777744 89999999999999999999999999999988886543
No 50
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=92.93 E-value=0.1 Score=29.65 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=19.0
Q ss_pred HHHHhhcCCCCCcceehhhHhh
Q 038674 317 MERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 317 ~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
.+.|.+.|.|++|.++.+|+..
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHH
Confidence 4579999999999999999753
No 51
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.20 E-value=13 Score=39.14 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHhhcc-----------------cCccceeeEEEeEe--eecccCCcccCCc-----cchhHHHHH
Q 038674 185 TFILLVLIIAGIVFLSVVED-----------------LKFVDALYCVCSTI--TTLGYGDMSFSTR-----GGRFFAVFW 240 (343)
Q Consensus 185 ~~~~~~~~~~g~~~~~~~e~-----------------~~~~da~y~~~~t~--tTvGyGD~~p~t~-----~gr~~~~~~ 240 (343)
++.+++++.++..++.+.++ .+..|++.-.+.|+ .||||||..-..+ .+++..+.|
T Consensus 548 ~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y 627 (782)
T KOG3676|consen 548 LIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAY 627 (782)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHH
Confidence 33445555666666666543 12345544444444 6899999975443 345554444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038674 241 IL-SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQ 275 (343)
Q Consensus 241 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 275 (343)
++ .-+.++-++++.+++.+..-.++....|+.++.
T Consensus 628 ~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A 663 (782)
T KOG3676|consen 628 MILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWA 663 (782)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHH
Confidence 44 566666777777777665444433344444433
No 52
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=91.08 E-value=0.055 Score=54.02 Aligned_cols=122 Identities=16% Similarity=0.314 Sum_probs=80.4
Q ss_pred CcccccceeeeccCcccccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----------hh---cc--
Q 038674 16 PLLSSKPVDYSNLNEPMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLI----------RH---QI-- 80 (343)
Q Consensus 16 ~l~~s~p~~~s~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~----------~~---~~-- 80 (343)
....|.||-..|+.++.......... ++....+...-.-..+++.|+-++..+|..- +. .+
T Consensus 512 viDFSKPfMslGISIMIKKPqKsk~g----VFSFldPLa~eIWm~ivfaYiGVSvvlFLVSrFSPYEwh~Ee~~rg~~t~ 587 (897)
T KOG1054|consen 512 VIDFSKPFMSLGISIMIKKPQKSKPG----VFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFERGRFTP 587 (897)
T ss_pred hhccccchhhcCeEEEEeCcccCCCC----eeeecchhHHHHHHHHHHHHhcceEEEEEEeccCchheeccccccCCCCC
Confidence 45789999999999998655444322 2222222111112223444554444444211 11 11
Q ss_pred -cCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 81 -KGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVE 142 (343)
Q Consensus 81 -~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~ 142 (343)
+.++-.+..+++||+...+.--| -|+.|.+-.||+....|-++-+.+++-..++++.+++-
T Consensus 588 ~~~~NeFgifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTv 649 (897)
T KOG1054|consen 588 SDPPNEFGIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 649 (897)
T ss_pred CCCCccchhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHhH
Confidence 13334678899999999988777 59999999999999999999988888888888887753
No 53
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=90.76 E-value=0.27 Score=29.01 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.5
Q ss_pred HHHHHhhcCCCCCcceehhhHhh
Q 038674 316 LMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 316 ~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
+.+-|+..|.|++|.++.+++..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~ 24 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKE 24 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHH
Confidence 45678889999999999999864
No 54
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=90.74 E-value=0.89 Score=31.81 Aligned_cols=56 Identities=25% Similarity=0.490 Sum_probs=39.3
Q ss_pred hhhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHH-HhhcCCCCCcceehhhHhh
Q 038674 282 EAADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMER-FRTLDADQSGNLTTADIML 338 (343)
Q Consensus 282 ~~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~-f~~ld~~~~g~l~~~d~~~ 338 (343)
..-|.+++|.++..|.... +...+ ...++.++...+. |+..|.|++|.++.+|...
T Consensus 7 ~~~D~d~~G~i~~~el~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 7 KKFDKDGDGYISKEELRRA-LKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp HHHSTTSSSEEEHHHHHHH-HHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred HHHcCCccCCCCHHHHHHH-HHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 3456788999998765443 34443 3446666655444 9999999999999998754
No 55
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=90.40 E-value=0.13 Score=42.30 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=43.8
Q ss_pred CccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 206 KFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSR 263 (343)
Q Consensus 206 ~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (343)
++.+++|+++.+++. +-++..|.+..+|++...|.+.++.+.+...+.+++.++..+
T Consensus 44 ~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 100 (148)
T PF00060_consen 44 SLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK 100 (148)
T ss_dssp HHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred cHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 366788888888877 667789999999999999999999999999999999888554
No 56
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=89.83 E-value=0.32 Score=28.94 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=19.1
Q ss_pred HHHHHhhcCCCCCcceehhhHhh
Q 038674 316 LMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 316 ~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
+.+-|+..|.|++|.++.+|+..
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~ 24 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRA 24 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHH
Confidence 56679999999999999999864
No 57
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=86.55 E-value=1.2 Score=37.11 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=42.5
Q ss_pred hhccCCCcceehHHHHHHHHHHcCCCCHH--HHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 283 AADLDHDKLVSVAEFVIYKLKEMGKINEE--DISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 283 ~~~l~~~~~v~~~e~v~~~L~~~~~i~~e--~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
..+.++++.|+..++..-+-......+.+ ....+.+.|+..|.|++|.++.+++..
T Consensus 52 ~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~ 109 (151)
T KOG0027|consen 52 EIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKK 109 (151)
T ss_pred HhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHH
Confidence 44567888899888877665544444433 467888899999999999999999864
No 58
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=85.21 E-value=1.2 Score=34.08 Aligned_cols=31 Identities=35% Similarity=0.467 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 308 INEEDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
++++++..+.+.|+.+|.|++|.++.+|+..
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~ 34 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKP 34 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 5778888999999999999999999998854
No 59
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=84.68 E-value=28 Score=37.01 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-------c----CccceeeEEEeEeeecccCCc--ccCCccchhHHHHHHHHHHHH
Q 038674 183 TATFILLVLIIAGIVFLSVVED-------L----KFVDALYCVCSTITTLGYGDM--SFSTRGGRFFAVFWILSGTIC 247 (343)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~~~e~-------~----~~~da~y~~~~t~tTvGyGD~--~p~t~~gr~~~~~~~~~g~~~ 247 (343)
+++...++++++++++|...|- . .+.+|++-++.+ =|-||--+ .-.++...++.++.|.+|..-
T Consensus 586 ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~P 662 (800)
T TIGR00934 586 WLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLP 662 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCC
Confidence 4555666777888888888772 1 245666666654 55566533 223456677777777777544
No 60
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=84.29 E-value=17 Score=36.69 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=27.7
Q ss_pred CCchhhhhhhhhhhcccccCccccCC-------chhhHHHHHHHHHHHH
Q 038674 86 NGVLDSIYFCIVTMTTVGYGDLVPHS-------TLAKLLACVYVFSGMA 127 (343)
Q Consensus 86 ~~~~~a~y~~~~t~tTvGyGd~~p~t-------~~gr~~~~~~~l~Gi~ 127 (343)
.++.||++.++++++|-||- ..+.+ +.=.+++++++++|=.
T Consensus 197 m~~~dAi~hs~Sa~~ngGFS-~~~~Si~~f~~~~~i~~i~~~liI~Ggi 244 (499)
T COG0168 197 MPLFDAIFHSMSAFNNGGFS-THDASIGYFNGSPLINLIITILIILGGI 244 (499)
T ss_pred CCHHHHHHHHHHHhhcCCCC-CCcchhhhcccChhHHHHHHHHHHHhcC
Confidence 46778999999999999996 44432 3334555555555533
No 61
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=82.79 E-value=0.61 Score=44.79 Aligned_cols=45 Identities=16% Similarity=0.364 Sum_probs=25.9
Q ss_pred CCchhhhhhhhhhhcccccCc----cccCC--chhhHHHHHHHHHHHHHHH
Q 038674 86 NGVLDSIYFCIVTMTTVGYGD----LVPHS--TLAKLLACVYVFSGMALVG 130 (343)
Q Consensus 86 ~~~~~a~y~~~~t~tTvGyGd----~~p~t--~~gr~~~~~~~l~Gi~~~~ 130 (343)
.++++|++.++.+++|-||.- +.|-. +...+..++.+++|-.-+.
T Consensus 52 ~~~~~aifhs~Sa~~t~GFs~~~~sl~~f~~~~~i~~i~~~lmi~Gg~~F~ 102 (354)
T PF02386_consen 52 MPLFDAIFHSMSAFSTGGFSPFSDSLAPFNSNPFIEIIIIILMILGGLGFP 102 (354)
T ss_dssp --SHHHHTTTHHHHTT----SSTTGGGSS---TTHHHHHHHHHHHHTS-HH
T ss_pred CcHHHHHHHHHHHHhcCCceecCCceecccccHHHHHHHHHHHHHhcCCHH
Confidence 578899999999999999842 23333 3566677777776643333
No 62
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=82.40 E-value=1.4 Score=46.37 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc---C-CCCCCchhhhhhhhhhhcccccC--ccccCCchhhHHHHHHHHHHHHH
Q 038674 56 RQVLLLLVGYLGVGALCFFLIRHQIK---G-EKTNGVLDSIYFCIVTMTTVGYG--DLVPHSTLAKLLACVYVFSGMAL 128 (343)
Q Consensus 56 ~~~~~~l~~~l~~g~~~~~~~~~~~~---~-~~~~~~~~a~y~~~~t~tTvGyG--d~~p~t~~gr~~~~~~~l~Gi~~ 128 (343)
+.++..++++++++.+.|++.|-+.+ + +....+.+|++-++++ =|-||. |+.-.++...++.++.|++|..=
T Consensus 585 ~ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~P 662 (800)
T TIGR00934 585 WWLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLP 662 (800)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCC
Confidence 34666677777888888888874211 1 1112467788877765 677886 55566788889999988887544
No 63
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=82.16 E-value=1.3 Score=30.98 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.1
Q ss_pred HHHHHHhhcCCCCCcceehhhHhh
Q 038674 315 VLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 315 ~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
++.+.|..+|.|++|.|+.+|+..
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~ 24 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRR 24 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHH
Confidence 357789999999999999999865
No 64
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=81.85 E-value=1.4 Score=36.87 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCcceehhhHhhh
Q 038674 308 INEEDISVLMERFRTLDADQSGNLTTADIMLL 339 (343)
Q Consensus 308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~~ 339 (343)
.+|..|++.++.|.-+|.|.+|.++++||.+.
T Consensus 26 f~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~ 57 (171)
T KOG0031|consen 26 FDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDM 57 (171)
T ss_pred hhHHHHHHHHHHHHHHhccCCCcccHHHHHHH
Confidence 46899999999999999999999999999864
No 65
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=81.81 E-value=6.8 Score=26.06 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=30.6
Q ss_pred cceehHHHHHHHHHHcC-C-CCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 290 KLVSVAEFVIYKLKEMG-K-INEEDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 290 ~~v~~~e~v~~~L~~~~-~-i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
|.|+..++.... ...+ . .++++++.+.. ..|.|++|.++.+|...
T Consensus 3 G~i~~~~~~~~l-~~~g~~~~s~~e~~~l~~---~~D~~~~G~I~~~EF~~ 49 (54)
T PF13833_consen 3 GKITREEFRRAL-SKLGIKDLSEEEVDRLFR---EFDTDGDGYISFDEFIS 49 (54)
T ss_dssp SEEEHHHHHHHH-HHTTSSSSCHHHHHHHHH---HHTTSSSSSEEHHHHHH
T ss_pred CEECHHHHHHHH-HHhCCCCCCHHHHHHHHH---hcccCCCCCCCHHHHHH
Confidence 456665554444 4433 4 77887777555 55889999999998764
No 66
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=79.15 E-value=5.6 Score=33.72 Aligned_cols=52 Identities=27% Similarity=0.556 Sum_probs=39.3
Q ss_pred hhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 283 AADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 283 ~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
.=|.+++|.|+.++ +.+.|+..+ +.++|+++.+.+.+ |.|++|.++.++...
T Consensus 100 ~fD~d~dG~Is~~e-L~~vl~~lge~~~deev~~ll~~~---d~d~dG~i~~~eF~~ 152 (160)
T COG5126 100 LFDKDHDGYISIGE-LRRVLKSLGERLSDEEVEKLLKEY---DEDGDGEIDYEEFKK 152 (160)
T ss_pred HhCCCCCceecHHH-HHHHHHhhcccCCHHHHHHHHHhc---CCCCCceEeHHHHHH
Confidence 34678899999766 455555555 57899998876666 779999999998765
No 67
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.05 E-value=33 Score=36.14 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=32.6
Q ss_pred CCCchhhhhhhhhhh--cccccCccccC--C---chhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 038674 85 TNGVLDSIYFCIVTM--TTVGYGDLVPH--S---TLAKLLACVYVFS-GMALVGLILGKAADYL 140 (343)
Q Consensus 85 ~~~~~~a~y~~~~t~--tTvGyGd~~p~--t---~~gr~~~~~~~l~-Gi~~~~~~~~~~~~~~ 140 (343)
..+..+++.-.+.++ +|+||||.... + ..++++.+.|+++ -+.++-++|+.+++-.
T Consensus 584 m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty 647 (782)
T KOG3676|consen 584 MCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTY 647 (782)
T ss_pred cCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 355667655444444 79999998654 3 3466666655553 4455555555555433
No 68
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=74.91 E-value=5.4 Score=41.57 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=42.1
Q ss_pred eeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 210 ALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQ 264 (343)
Q Consensus 210 a~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 264 (343)
++|+++.++..-|- +..|.+..+|++...|.++++.+.+...+.+++.++..+.
T Consensus 385 ~~~~~~~~~~~q~~-~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~~~ 438 (656)
T KOG1052|consen 385 CLWLTVGSLLQQGS-DEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVPRL 438 (656)
T ss_pred chhhhhHHHhccCC-CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34444454555553 4889999999999999999999999999999998875543
No 69
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=74.84 E-value=6.9 Score=33.87 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=46.5
Q ss_pred ccCCCCCCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 038674 80 IKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILG 134 (343)
Q Consensus 80 ~~~~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~ 134 (343)
+++++..+|.|=+||+++.=+|-.-.|+.+.+..-|-....-.+++..+-+.+++
T Consensus 125 FP~~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 125 FPGDWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCCCCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666678999999999999999999999999999999988888877766665543
No 70
>PLN03223 Polycystin cation channel protein; Provisional
Probab=70.51 E-value=86 Score=35.48 Aligned_cols=31 Identities=6% Similarity=0.120 Sum_probs=18.7
Q ss_pred cchhHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 038674 232 GGRFFAVFWIL-SGTICLAQFFLYLTELYTQS 262 (343)
Q Consensus 232 ~gr~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 262 (343)
.|.+|.+.|++ +.++++-++++++.+.+.+.
T Consensus 1394 LGPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1394 VGMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544444 55566667777777776644
No 71
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=68.47 E-value=10 Score=33.15 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=38.3
Q ss_pred hhhccCCCcceehHHHH---HHHHHHcCC----CCHHHH-HHHHHHHhhcCCCCCcceehhhHhhh
Q 038674 282 EAADLDHDKLVSVAEFV---IYKLKEMGK----INEEDI-SVLMERFRTLDADQSGNLTTADIMLL 339 (343)
Q Consensus 282 ~~~~l~~~~~v~~~e~v---~~~L~~~~~----i~~e~i-~~~~~~f~~ld~~~~g~l~~~d~~~~ 339 (343)
+.-|+++||.|++.|.+ ...+..++. .+.+.. +....-|.+.|.|++|.|+.+|....
T Consensus 107 ~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~ 172 (193)
T KOG0044|consen 107 RLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEG 172 (193)
T ss_pred eeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHH
Confidence 34678899999866632 333444443 223333 33345599999999999999998654
No 72
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=68.31 E-value=5.4 Score=31.89 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674 309 NEEDISVLMERFRTLDADQSGNLTTADIM 337 (343)
Q Consensus 309 ~~e~i~~~~~~f~~ld~~~~g~l~~~d~~ 337 (343)
.++....+.-.|..+|.|++|.|++++|.
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~ 71 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELA 71 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHH
Confidence 34455566666777777777777777765
No 73
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.11 E-value=5.8 Score=37.21 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=38.4
Q ss_pred hhhccCCCcceehHHHHHHHHHHcCCCCHHHH--HHHHHHHhhcCCCCCcceehhhHh
Q 038674 282 EAADLDHDKLVSVAEFVIYKLKEMGKINEEDI--SVLMERFRTLDADQSGNLTTADIM 337 (343)
Q Consensus 282 ~~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i--~~~~~~f~~ld~~~~g~l~~~d~~ 337 (343)
+..|.+++|.|+..||+..+....+.-.+.+. .+-.+-++..|.|++|.|+.++|.
T Consensus 207 ~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~ 264 (325)
T KOG4223|consen 207 EDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELL 264 (325)
T ss_pred hhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHh
Confidence 45667889999999999888776653222221 121233667788999999998876
No 74
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=65.03 E-value=2.4e+02 Score=31.66 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=20.9
Q ss_pred cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHH
Q 038674 205 LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244 (343)
Q Consensus 205 ~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g 244 (343)
.+|.|.+-..-+|.|+-|=.-..|.|...-+++++.+++|
T Consensus 807 ~s~Ld~i~LW~~t~~~~g~~~~~~itl~~ll~AllIliv~ 846 (1109)
T PRK10929 807 FGFLENISLWDVTSTVQGVESLQPITLGSVLIAILVFIIT 846 (1109)
T ss_pred HHHhcceeEEeeeceeccccceeeeeHHHHHHHHHHHHHH
Confidence 5677776655566665554344566643333334433333
No 75
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=64.19 E-value=1.5e+02 Score=30.44 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=40.4
Q ss_pred CCchhhhhhhhhhhccccc--CccccCCchhhHHHHHHHHHH-HHHHHHHHHHHH
Q 038674 86 NGVLDSIYFCIVTMTTVGY--GDLVPHSTLAKLLACVYVFSG-MALVGLILGKAA 137 (343)
Q Consensus 86 ~~~~~a~y~~~~t~tTvGy--Gd~~p~t~~gr~~~~~~~l~G-i~~~~~~~~~~~ 137 (343)
..+.+-+|=......|+|- |.+.|.|+.+++..++.|++| +..+...++..+
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit~~lAlAg 504 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPIIPVLAIAG 504 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999988889999985 558899999999999999988 334444444333
No 76
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=63.76 E-value=6.9 Score=29.09 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcCC--CCCcceehhhHhhh
Q 038674 310 EEDISVLMERFRTLDA--DQSGNLTTADIMLL 339 (343)
Q Consensus 310 ~e~i~~~~~~f~~ld~--~~~g~l~~~d~~~~ 339 (343)
++++..+.+.|...|. |++|.++.+++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~ 35 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKEL 35 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHH
Confidence 5778888889999999 89999999987653
No 77
>PTZ00183 centrin; Provisional
Probab=62.89 E-value=24 Score=28.78 Aligned_cols=55 Identities=13% Similarity=0.236 Sum_probs=39.1
Q ss_pred hhhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhhh
Q 038674 282 EAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLL 339 (343)
Q Consensus 282 ~~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~~ 339 (343)
...+.++++.++..|+..........++++++..+.+ .+|.+++|.++.+++...
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~---~~d~~~~g~i~~~ef~~~ 151 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAKELGETITDEELQEMID---EADRNGDGEISEEEFYRI 151 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH---HhCCCCCCcCcHHHHHHH
Confidence 3456677888887776655544445688888777655 558899999999988543
No 78
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=62.64 E-value=27 Score=26.20 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=31.8
Q ss_pred CcceehHHHHHHHHHH----cCCCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674 289 DKLVSVAEFVIYKLKE----MGKINEEDISVLMERFRTLDADQSGNLTTADIM 337 (343)
Q Consensus 289 ~~~v~~~e~v~~~L~~----~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~ 337 (343)
++.++..|... .+.+ ..+.++++++++.+ ++|.|++|.++-+|..
T Consensus 26 ~g~Is~~EL~~-~l~~~~~lg~k~t~~ev~~m~~---~~D~d~dG~Idf~EFv 74 (88)
T cd05029 26 KNTLSKKELKE-LIQKELTIGSKLQDAEIAKLME---DLDRNKDQEVNFQEYV 74 (88)
T ss_pred CCEECHHHHHH-HHHHHHhcCCCCCHHHHHHHHH---HhcCCCCCCCcHHHHH
Confidence 66777665433 3431 34578898888755 5599999999999875
No 79
>PTZ00184 calmodulin; Provisional
Probab=62.62 E-value=23 Score=28.44 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=24.4
Q ss_pred ccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674 285 DLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIM 337 (343)
Q Consensus 285 ~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~ 337 (343)
|.++++.++..++... +...+ ..+++++..+ ++..|.+++|.++-++..
T Consensus 94 D~~~~g~i~~~e~~~~-l~~~~~~~~~~~~~~~---~~~~d~~~~g~i~~~ef~ 143 (149)
T PTZ00184 94 DRDGNGFISAAELRHV-MTNLGEKLTDEEVDEM---IREADVDGDGQINYEEFV 143 (149)
T ss_pred CCCCCCeEeHHHHHHH-HHHHCCCCCHHHHHHH---HHhcCCCCCCcCcHHHHH
Confidence 4455555665444322 22222 3455555544 344456666666666654
No 80
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=61.64 E-value=32 Score=25.98 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=32.8
Q ss_pred hccCCCc-ceehHHHHHHHHHH------cCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 284 ADLDHDK-LVSVAEFVIYKLKE------MGKINEEDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 284 ~~l~~~~-~v~~~e~v~~~L~~------~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
++.++++ .++..|. .+.+.+ .+..++++++++.++ +|.|++|.++-++...
T Consensus 20 dd~dgdg~~Is~~EL-~~ll~~~~~~~~~~~~~~~~v~~i~~e---lD~n~dG~Idf~EF~~ 77 (93)
T cd05026 20 SGKEGDRYKLSKGEL-KELLQRELTDFLSSQKDPMLVDKIMND---LDSNKDNEVDFNEFVV 77 (93)
T ss_pred HccCCCCCEECHHHH-HHHHHHHhHHhcccccCHHHHHHHHHH---hCCCCCCCCCHHHHHH
Confidence 4455666 4777664 333433 233466777776555 4889999999998754
No 81
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=61.06 E-value=33 Score=23.34 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=33.4
Q ss_pred hccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 284 ADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 284 ~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
-|.+++|.++..|. ...+.+.+ .+++++..+. +..|.+++|.++.++...
T Consensus 8 ~D~~~~G~i~~~el-~~~l~~~g-~~~~~~~~i~---~~~d~~~~g~i~~~ef~~ 57 (67)
T cd00052 8 LDPDGDGLISGDEA-RPFLGKSG-LPRSVLAQIW---DLADTDKDGKLDKEEFAI 57 (67)
T ss_pred hCCCCCCcCcHHHH-HHHHHHcC-CCHHHHHHHH---HHhcCCCCCcCCHHHHHH
Confidence 34566777776554 34455555 4777776664 556889999999988754
No 82
>PTZ00183 centrin; Provisional
Probab=60.37 E-value=23 Score=28.89 Aligned_cols=51 Identities=22% Similarity=0.357 Sum_probs=34.9
Q ss_pred ccCCCcceehHHHHHHHHHH-cCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 285 DLDHDKLVSVAEFVIYKLKE-MGKINEEDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 285 ~l~~~~~v~~~e~v~~~L~~-~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
+.++++.++..+++...-.. .....++ .+...|+..|.+++|.++.+|+..
T Consensus 63 d~~~~g~i~~~eF~~~~~~~~~~~~~~~---~l~~~F~~~D~~~~G~i~~~e~~~ 114 (158)
T PTZ00183 63 DKDGSGKIDFEEFLDIMTKKLGERDPRE---EILKAFRLFDDDKTGKISLKNLKR 114 (158)
T ss_pred CCCCCCcEeHHHHHHHHHHHhcCCCcHH---HHHHHHHHhCCCCCCcCcHHHHHH
Confidence 44677788888877654332 2223333 456678889999999999998753
No 83
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=59.53 E-value=36 Score=25.56 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=33.3
Q ss_pred cCCCc-ceehHHHHHHHHHH-----cC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 286 LDHDK-LVSVAEFVIYKLKE-----MG-KINEEDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 286 l~~~~-~v~~~e~v~~~L~~-----~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
.++++ .++..| +...|.. .+ ..++++++++.+. +|.|++|.++-++...
T Consensus 20 ~dgdG~~I~~~e-L~~ll~~~~~~~lg~~~~~~~v~~~i~~---~D~n~dG~v~f~eF~~ 75 (88)
T cd05027 20 REGDKHKLKKSE-LKELINNELSHFLEEIKEQEVVDKVMET---LDSDGDGECDFQEFMA 75 (88)
T ss_pred cCCCcCEECHHH-HHHHHHHHhHHHhcCCCCHHHHHHHHHH---hCCCCCCcCcHHHHHH
Confidence 35666 477655 4444454 33 4577888887664 4889999999998754
No 84
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=58.37 E-value=25 Score=29.26 Aligned_cols=55 Identities=20% Similarity=0.408 Sum_probs=38.7
Q ss_pred hhccCCCcceehHHHHHHHHH--HcCCCCHHHHHHHHHH-HhhcCCCCCcceehhhHhh
Q 038674 283 AADLDHDKLVSVAEFVIYKLK--EMGKINEEDISVLMER-FRTLDADQSGNLTTADIML 338 (343)
Q Consensus 283 ~~~l~~~~~v~~~e~v~~~L~--~~~~i~~e~i~~~~~~-f~~ld~~~~g~l~~~d~~~ 338 (343)
.=|.++++.+|..+.. ..+. ..+..++|++..+.++ .++-|.|++|.|+.+|...
T Consensus 116 IYDfd~D~~i~~~DL~-~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~ 173 (189)
T KOG0038|consen 116 IYDFDGDEFIGHDDLE-KTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEH 173 (189)
T ss_pred EeecCCCCcccHHHHH-HHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Confidence 4467888888865532 2222 3345678888777655 7889999999999988653
No 85
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=56.92 E-value=24 Score=30.69 Aligned_cols=56 Identities=20% Similarity=0.413 Sum_probs=36.2
Q ss_pred hccCCCcceehHHHH--HHHHHHc-CCCCHHHHHHHHHH-HhhcCCCCCcceehhhHhhh
Q 038674 284 ADLDHDKLVSVAEFV--IYKLKEM-GKINEEDISVLMER-FRTLDADQSGNLTTADIMLL 339 (343)
Q Consensus 284 ~~l~~~~~v~~~e~v--~~~L~~~-~~i~~e~i~~~~~~-f~~ld~~~~g~l~~~d~~~~ 339 (343)
=|++++|.|++.|.. +.++... ...++|.+..+.+. +.+-|.|++|.++.+|-...
T Consensus 113 YD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~ 172 (187)
T KOG0034|consen 113 YDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKV 172 (187)
T ss_pred hcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 357788888865532 2222221 11136667666554 99999999999999986543
No 86
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=56.81 E-value=38 Score=25.48 Aligned_cols=48 Identities=23% Similarity=0.392 Sum_probs=30.6
Q ss_pred CCCc-ceehHHHHHHHHHH-----cCCCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674 287 DHDK-LVSVAEFVIYKLKE-----MGKINEEDISVLMERFRTLDADQSGNLTTADIM 337 (343)
Q Consensus 287 ~~~~-~v~~~e~v~~~L~~-----~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~ 337 (343)
++++ .++..|+..-.-.+ ....++++++++.+ ++|.|++|.++-++..
T Consensus 22 dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~---~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 22 DGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMK---KLDLNSDGQLDFQEFL 75 (89)
T ss_pred CCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHH---HcCCCCCCcCcHHHHH
Confidence 4443 67776643333222 13566777777654 6688999999998875
No 87
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=56.13 E-value=10 Score=20.29 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=17.5
Q ss_pred HHHHhhcCCCCCcceehhhHhh
Q 038674 317 MERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 317 ~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
.+-|+..|.+++|.++.+++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~ 24 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKD 24 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHH
Confidence 4567788999999999998754
No 88
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=54.00 E-value=16 Score=27.51 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhcC-CCCCc-ceehhhHhh
Q 038674 310 EEDISVLMERFRTLD-ADQSG-NLTTADIML 338 (343)
Q Consensus 310 ~e~i~~~~~~f~~ld-~~~~g-~l~~~d~~~ 338 (343)
+..|..+.+.|+..| .|++| .++.+++..
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ 34 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKE 34 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHH
Confidence 456778888999998 79999 599998864
No 89
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=53.90 E-value=15 Score=27.59 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhcC-CCCCc-ceehhhHhhh
Q 038674 310 EEDISVLMERFRTLD-ADQSG-NLTTADIMLL 339 (343)
Q Consensus 310 ~e~i~~~~~~f~~ld-~~~~g-~l~~~d~~~~ 339 (343)
+..+..+.+.|+..| .+++| .|+++|+...
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~ 36 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDL 36 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHH
Confidence 344567788899996 99999 5999988643
No 90
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=53.70 E-value=16 Score=27.71 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhcCC-CCCcceehhhHh
Q 038674 312 DISVLMERFRTLDA-DQSGNLTTADIM 337 (343)
Q Consensus 312 ~i~~~~~~f~~ld~-~~~g~l~~~d~~ 337 (343)
.+..+.+.|+..|. +++|.|+.+++.
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk 32 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQ 32 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHH
Confidence 34444555555555 555555555543
No 91
>PTZ00184 calmodulin; Provisional
Probab=53.48 E-value=42 Score=26.78 Aligned_cols=53 Identities=23% Similarity=0.433 Sum_probs=35.2
Q ss_pred hccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 284 ADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 284 ~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
.+.++++.++..+++............+ ..+...|+..|.+++|.++++|+..
T Consensus 56 ~d~~~~g~i~~~ef~~~l~~~~~~~~~~--~~~~~~F~~~D~~~~g~i~~~e~~~ 108 (149)
T PTZ00184 56 VDADGNGTIDFPEFLTLMARKMKDTDSE--EEIKEAFKVFDRDGNGFISAAELRH 108 (149)
T ss_pred cCcCCCCcCcHHHHHHHHHHhccCCcHH--HHHHHHHHhhCCCCCCeEeHHHHHH
Confidence 3445677788877776554333322222 3456678888999999999999853
No 92
>PLN02964 phosphatidylserine decarboxylase
Probab=53.29 E-value=28 Score=36.30 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=36.8
Q ss_pred hhccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhHhhh
Q 038674 283 AADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADIMLL 339 (343)
Q Consensus 283 ~~~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~~ 339 (343)
..|.++++.++..|++..+- ..+ ..++++ +.+.|+..|.|++|.++.+|+...
T Consensus 187 ~~D~DgdG~IdfdEFl~lL~-~lg~~~seEE---L~eaFk~fDkDgdG~Is~dEL~~v 240 (644)
T PLN02964 187 IVDYDEDGQLSFSEFSDLIK-AFGNLVAANK---KEELFKAADLNGDGVVTIDELAAL 240 (644)
T ss_pred HhCCCCCCeEcHHHHHHHHH-HhccCCCHHH---HHHHHHHhCCCCCCcCCHHHHHHH
Confidence 34567788888877765443 333 244554 555788889999999999998653
No 93
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=52.91 E-value=9.9 Score=38.88 Aligned_cols=56 Identities=16% Similarity=0.304 Sum_probs=50.6
Q ss_pred cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 205 LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYT 260 (343)
Q Consensus 205 ~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~ 260 (343)
.++..|+||+--.+..-|-|+-.|.+-..|++.++|.-+.+++++..++.++..++
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 67889999998888888999999999999999999999999999999988888765
No 94
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=50.72 E-value=65 Score=20.64 Aligned_cols=49 Identities=29% Similarity=0.502 Sum_probs=31.3
Q ss_pred ccCCCcceehHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674 285 DLDHDKLVSVAEFVIYKLKEM-GKINEEDISVLMERFRTLDADQSGNLTTADIM 337 (343)
Q Consensus 285 ~l~~~~~v~~~e~v~~~L~~~-~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~ 337 (343)
+.++.+.+...++.. .+... ...+++.+..+ |+..|.+++|.++.++..
T Consensus 10 d~~~~g~l~~~e~~~-~l~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~ef~ 59 (63)
T cd00051 10 DKDGDGTISADELKA-ALKSLGEGLSEEEIDEM---IREVDKDGDGKIDFEEFL 59 (63)
T ss_pred CCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence 445566676655433 34444 34566666654 556678999999998875
No 95
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=49.94 E-value=9.8 Score=26.14 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=18.4
Q ss_pred HHHHhhcCCCCCcceehhhHhh
Q 038674 317 MERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 317 ~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
.+.|+.+|.|++|.++.+|+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~ 23 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARP 23 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHH
Confidence 3568889999999999998753
No 96
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=49.73 E-value=48 Score=27.95 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=12.0
Q ss_pred eeEEEeEeeecccCCcccCC
Q 038674 211 LYCVCSTITTLGYGDMSFST 230 (343)
Q Consensus 211 ~y~~~~t~tTvGyGD~~p~t 230 (343)
+...+.++..+=+|++.|..
T Consensus 90 ~~~~~~~~l~lif~e~lPk~ 109 (183)
T PF01595_consen 90 IAFLIITLLILIFGEILPKA 109 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344555566677777765
No 97
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=48.71 E-value=4.8 Score=34.85 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=39.5
Q ss_pred cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHH
Q 038674 205 LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFF 252 (343)
Q Consensus 205 ~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~ 252 (343)
.+|.|-+||+++.-+|-.-.|..+.+..-|-.+..-.+++..+.+..+
T Consensus 131 P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~il 178 (180)
T PF07077_consen 131 PDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVIL 178 (180)
T ss_pred CCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999888888777776665554443
No 98
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=48.48 E-value=38 Score=28.73 Aligned_cols=18 Identities=28% Similarity=0.741 Sum_probs=9.0
Q ss_pred HHhhcCCCCCcceehhhH
Q 038674 319 RFRTLDADQSGNLTTADI 336 (343)
Q Consensus 319 ~f~~ld~~~~g~l~~~d~ 336 (343)
.|+..|.|++|.|++.++
T Consensus 111 afrl~D~D~~Gkis~~~l 128 (172)
T KOG0028|consen 111 AFRLFDDDKTGKISQRNL 128 (172)
T ss_pred HHHcccccCCCCcCHHHH
Confidence 444445555555554443
No 99
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=48.41 E-value=47 Score=25.05 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=31.1
Q ss_pred CCCcceehHHHHHHHHHH-cC-CCCH-HHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 287 DHDKLVSVAEFVIYKLKE-MG-KINE-EDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 287 ~~~~~v~~~e~v~~~L~~-~~-~i~~-e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
++++.++..|. ...+.+ .+ .++. ++++.+ ++.+|.|++|.++-++...
T Consensus 21 ~~~g~i~~~EL-k~ll~~elg~~ls~~~~v~~m---i~~~D~d~DG~I~F~EF~~ 71 (89)
T cd05022 21 GGKESLTASEF-QELLTQQLPHLLKDVEGLEEK---MKNLDVNQDSKLSFEEFWE 71 (89)
T ss_pred CCCCeECHHHH-HHHHHHHhhhhccCHHHHHHH---HHHhCCCCCCCCcHHHHHH
Confidence 56667776553 333333 33 3555 666665 5667999999999998753
No 100
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=45.84 E-value=22 Score=26.84 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhcCC-CC-CcceehhhHhh
Q 038674 311 EDISVLMERFRTLDA-DQ-SGNLTTADIML 338 (343)
Q Consensus 311 e~i~~~~~~f~~ld~-~~-~g~l~~~d~~~ 338 (343)
+....+.+.|...|. |+ +|.|+.+|+..
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~ 34 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKK 34 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHH
Confidence 345667788999987 87 69999998874
No 101
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=45.04 E-value=24 Score=30.76 Aligned_cols=34 Identities=29% Similarity=0.577 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCC-CCcceehhhHhhh
Q 038674 306 GKINEEDISVLMERFRTLDAD-QSGNLTTADIMLL 339 (343)
Q Consensus 306 ~~i~~e~i~~~~~~f~~ld~~-~~g~l~~~d~~~~ 339 (343)
..-+.++|..+..+|.++|.+ ++|.++++++...
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i 59 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSI 59 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHH
Confidence 445789999999999999999 9999999998653
No 102
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.58 E-value=4.4e+02 Score=28.48 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-----cCccceeeEEEeEeeecccCCcccCC--ccchhHHHHHHH
Q 038674 183 TATFILLVLIIAGIVFLSVVED-----LKFVDALYCVCSTITTLGYGDMSFST--RGGRFFAVFWIL 242 (343)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~~~e~-----~~~~da~y~~~~t~tTvGyGD~~p~t--~~gr~~~~~~~~ 242 (343)
++++++++++..+.+++..... +++.+ ++.|+.-.=.||..|.+ +.+|+++.++..
T Consensus 595 f~l~~~I~~~aya~l~~llfG~~v~~f~~f~~----s~~t~~~~~~G~~~~~~i~~~~r~LG~~~~~ 657 (798)
T KOG3599|consen 595 FALMFLILFFAYAQLGYLLFGNQVSDFRTFVA----SIVTLLRYILGDFCPAEIFHANRILGPLLFL 657 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCChHHHHH----HHHHHHHHHhccCCccccccCCchHHHHHHH
Confidence 3444444455555555554443 23333 33444444457888765 467777655554
No 103
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=44.55 E-value=81 Score=29.52 Aligned_cols=31 Identities=10% Similarity=0.382 Sum_probs=22.1
Q ss_pred CCCCCchhhhhhhhhhhcccccCccccCCchh
Q 038674 83 EKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLA 114 (343)
Q Consensus 83 ~~~~~~~~a~y~~~~t~tTvGyGd~~p~t~~g 114 (343)
++...+.++.+|...-+ +..+||..|.-..|
T Consensus 24 ~np~R~gt~lFW~llg~-~F~~G~~lp~~~~G 54 (308)
T PF06166_consen 24 TNPKRIGTALFWGLLGL-IFIFGDYLPPFVVG 54 (308)
T ss_pred CCCcccchHHHHHHHHH-HHHcCccchhHHHH
Confidence 34467889999988765 45789988775433
No 104
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=44.16 E-value=35 Score=33.28 Aligned_cols=18 Identities=22% Similarity=0.648 Sum_probs=8.9
Q ss_pred HHhhcCCCCCcceehhhH
Q 038674 319 RFRTLDADQSGNLTTADI 336 (343)
Q Consensus 319 ~f~~ld~~~~g~l~~~d~ 336 (343)
-|..+|.+++|.++++++
T Consensus 87 ~F~~iD~~hdG~i~~~Ei 104 (463)
T KOG0036|consen 87 IFQSIDLEHDGKIDPNEI 104 (463)
T ss_pred HHhhhccccCCccCHHHH
Confidence 355555555555554443
No 105
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=43.64 E-value=5.8 Score=40.24 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=49.8
Q ss_pred cCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 205 LKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSR 263 (343)
Q Consensus 205 ~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (343)
.+..+++||+.-.+.-=| -|+.|.+-.||+....|-++.+++++..++.++..++..+
T Consensus 594 FgifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTvEr 651 (897)
T KOG1054|consen 594 FGIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVER 651 (897)
T ss_pred chhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHhHHh
Confidence 356789999988887777 5999999999999999999999999999998888877544
No 106
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=43.36 E-value=62 Score=21.83 Aligned_cols=39 Identities=28% Similarity=0.270 Sum_probs=24.8
Q ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 297 FVIYKLKEMGK-INEEDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 297 ~v~~~L~~~~~-i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
.+...|+.++. ++++.. ..-|.+.|..++|.|..+++..
T Consensus 6 Evk~lLk~~NI~~~~~yA---~~LFq~~D~s~~g~Le~~Ef~~ 45 (51)
T PF14788_consen 6 EVKKLLKMMNIEMDDEYA---RQLFQECDKSQSGRLEGEEFEE 45 (51)
T ss_dssp HHHHHHHHTT----HHHH---HHHHHHH-SSSSSEBEHHHHHH
T ss_pred HHHHHHHHHccCcCHHHH---HHHHHHhcccCCCCccHHHHHH
Confidence 45556666664 333332 3368899999999999998864
No 107
>COG3817 Predicted membrane protein [Function unknown]
Probab=42.48 E-value=93 Score=28.47 Aligned_cols=28 Identities=18% Similarity=0.443 Sum_probs=21.3
Q ss_pred CCCCchhhhhhhhhhhcccccCccccCCc
Q 038674 84 KTNGVLDSIYFCIVTMTTVGYGDLVPHST 112 (343)
Q Consensus 84 ~~~~~~~a~y~~~~t~tTvGyGd~~p~t~ 112 (343)
+...+.++.+|..-.+|-+| ||..|.-.
T Consensus 29 np~r~~t~~FW~l~~~tFl~-g~~lp~~v 56 (313)
T COG3817 29 NPVRFGTGLFWGLFSLTFLG-GDRLPNIV 56 (313)
T ss_pred CCceecchHHHHHHHHHHhc-cccccchh
Confidence 34678899999998888777 67777644
No 108
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=41.95 E-value=1e+02 Score=23.20 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=34.2
Q ss_pred hccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 284 ADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 284 ~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
-|.+++|.++..+ +...+... ..+++++..+.. ..|.+++|.++.++...
T Consensus 19 ~D~d~~G~Is~~e-l~~~l~~~-~~~~~ev~~i~~---~~d~~~~g~I~~~eF~~ 68 (96)
T smart00027 19 LDKNQDGTVTGAQ-AKPILLKS-GLPQTLLAKIWN---LADIDNDGELDKDEFAL 68 (96)
T ss_pred hCCCCCCeEeHHH-HHHHHHHc-CCCHHHHHHHHH---HhcCCCCCCcCHHHHHH
Confidence 3456677777655 44445554 467887777655 45789999999998764
No 109
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=41.52 E-value=68 Score=33.97 Aligned_cols=57 Identities=14% Similarity=0.234 Sum_probs=29.1
Q ss_pred eecccCCcccCC-----ccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038674 219 TTLGYGDMSFST-----RGGRFFAVFWIL-SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQ 275 (343)
Q Consensus 219 tTvGyGD~~p~t-----~~gr~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 275 (343)
+++|.+|..... ..|.++.++|++ .-++++-++++.+.+.+..-..+....|...|.
T Consensus 569 ~~~G~~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~wk~~r~ 631 (743)
T TIGR00870 569 AIIGLGDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEWKFQRA 631 (743)
T ss_pred HHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence 356777763222 234555444444 344445556666666665544444445544443
No 110
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=38.30 E-value=19 Score=28.48 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHhhcCCCCCcceehhhHhhhc
Q 038674 309 NEEDISVLMERFRTLDADQSGNLTTADIMLLQ 340 (343)
Q Consensus 309 ~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~~~ 340 (343)
.++....+.=.|.+||.|++|.|+++++....
T Consensus 49 ~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~ 80 (113)
T PF10591_consen 49 YSECKRVVHWKFCQLDRNKDGVLDRSELKPLR 80 (113)
T ss_dssp GGGGHHHHHHHHHHH--T-SSEE-TTTTGGGG
T ss_pred hhhhhhhhhhhHhhhcCCCCCccCHHHHHHHH
Confidence 34444555668999999999999999987654
No 111
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=37.39 E-value=42 Score=25.26 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhh-cCCCCCc-ceehhhHhhh
Q 038674 310 EEDISVLMERFRT-LDADQSG-NLTTADIMLL 339 (343)
Q Consensus 310 ~e~i~~~~~~f~~-ld~~~~g-~l~~~d~~~~ 339 (343)
++.+..+...|++ .|.+++| .|+++|+...
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~l 36 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSF 36 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHH
Confidence 4567778888888 7787876 8999888654
No 112
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=37.05 E-value=56 Score=26.04 Aligned_cols=47 Identities=26% Similarity=0.301 Sum_probs=28.8
Q ss_pred hhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhH
Q 038674 283 AADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336 (343)
Q Consensus 283 ~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~ 336 (343)
.-|.+++|.++..|.....+ .-.++.+. .-|+..|.|++|.||.++.
T Consensus 56 ~lD~d~DG~Ls~~EL~~~~l----~~~e~~~~---~f~~~~D~n~Dg~IS~~Ef 102 (116)
T cd00252 56 QLDGNYDGKLSHHELAPIRL----DPNEHCIK---PFFESCDLDKDGSISLDEW 102 (116)
T ss_pred HHCCCCCCcCCHHHHHHHHc----cchHHHHH---HHHHHHCCCCCCCCCHHHH
Confidence 34567778787766543220 11123233 3466779999999999884
No 113
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=37.04 E-value=39 Score=25.52 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhcC-CCCCc-ceehhhHhhh
Q 038674 310 EEDISVLMERFRTLD-ADQSG-NLTTADIMLL 339 (343)
Q Consensus 310 ~e~i~~~~~~f~~ld-~~~~g-~l~~~d~~~~ 339 (343)
+..+..+.+.|+.-| .|++| .|+++|+...
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~l 37 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKEL 37 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHH
Confidence 455667777788888 67887 4888887643
No 114
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=35.27 E-value=90 Score=26.47 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=31.7
Q ss_pred CcceehHHHHHHHHHHcCCC-CHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 289 DKLVSVAEFVIYKLKEMGKI-NEEDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 289 ~~~v~~~e~v~~~L~~~~~i-~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
.+-++-.+++..+=....+- .+|+ +...|+..|.|++|.++..++..
T Consensus 69 ~~~idf~~Fl~~ms~~~~~~~~~Ee---l~~aF~~fD~d~dG~Is~~eL~~ 116 (160)
T COG5126 69 NETVDFPEFLTVMSVKLKRGDKEEE---LREAFKLFDKDHDGYISIGELRR 116 (160)
T ss_pred CCccCHHHHHHHHHHHhccCCcHHH---HHHHHHHhCCCCCceecHHHHHH
Confidence 35566666766665444333 3554 45578888999999999988753
No 115
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=34.69 E-value=65 Score=28.20 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=36.6
Q ss_pred hccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 284 ADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 284 ~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
-|.++++-++-.|++...=.-.+-..+|.+... |+--|.|++|.+++++...
T Consensus 73 fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~---F~lyD~dgdG~It~~Eml~ 124 (193)
T KOG0044|consen 73 FDKNKDGTIDFLEFICALSLTSRGTLEEKLKWA---FRLYDLDGDGYITKEEMLK 124 (193)
T ss_pred hcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhh---heeecCCCCceEcHHHHHH
Confidence 345678888888877776444444445545543 9999999999999988653
No 116
>PLN03223 Polycystin cation channel protein; Provisional
Probab=34.22 E-value=3.8e+02 Score=30.73 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=31.7
Q ss_pred CCCCchhhhhhhhhhhcccccCc-----cccC----CchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 038674 84 KTNGVLDSIYFCIVTMTTVGYGD-----LVPH----STLAKLLACVYVF-SGMALVGLILGKAADYLVE 142 (343)
Q Consensus 84 ~~~~~~~a~y~~~~t~tTvGyGd-----~~p~----t~~gr~~~~~~~l-~Gi~~~~~~~~~~~~~~~~ 142 (343)
.+.++..|++-.+..++ |-.+ ..+. ...|.++.+.|++ +.+.++-++++.+.+.+.+
T Consensus 1358 ~FSTf~sSL~TLFqMLL--GDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsE 1424 (1634)
T PLN03223 1358 HFSDMTDSINSLFENLL--GDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGE 1424 (1634)
T ss_pred hhcCHHHHHHHHHHHHH--cCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777766655543 3222 1122 3457766666655 3456666677776666654
No 117
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=34.18 E-value=28 Score=27.16 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=6.6
Q ss_pred cCCCCCcceehhhH
Q 038674 323 LDADQSGNLTTADI 336 (343)
Q Consensus 323 ld~~~~g~l~~~d~ 336 (343)
-|.|++|.|+.++.
T Consensus 52 aD~~~dG~L~~~EF 65 (104)
T PF12763_consen 52 ADIDNDGKLDFEEF 65 (104)
T ss_dssp H-SSSSSEEEHHHH
T ss_pred hcCCCCCcCCHHHH
Confidence 34455555555544
No 118
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=32.81 E-value=1.3e+02 Score=24.71 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=37.1
Q ss_pred hhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674 283 AADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM 337 (343)
Q Consensus 283 ~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~ 337 (343)
.-|.+++|.|+..|...-+-.-..+.+.++++.+.+ +.|.|++|.++-++..
T Consensus 93 ~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~---~~d~d~dg~i~f~ef~ 144 (151)
T KOG0027|consen 93 VFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIR---EVDVDGDGKVNFEEFV 144 (151)
T ss_pred HHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHH---hcCCCCCCeEeHHHHH
Confidence 445678888988776665555566778777777555 4577999999876654
No 119
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.73 E-value=64 Score=30.42 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=39.3
Q ss_pred hhhhccCCCcceehHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCcceehhhHh
Q 038674 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM 337 (343)
Q Consensus 281 l~~~~l~~~~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~ 337 (343)
+..++.++++..+..||....=.+. .....---+.+..+.+|.|++|.++.++..
T Consensus 169 Fk~AD~d~dg~lt~EEF~aFLHPEe--~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfi 223 (325)
T KOG4223|consen 169 FKAADQDGDGSLTLEEFTAFLHPEE--HPHMKDIVIAETLEDIDKNGDGKISLEEFI 223 (325)
T ss_pred HhhcccCCCCcccHHHHHhccChhh--cchHHHHHHHHHHhhcccCCCCceeHHHHH
Confidence 4578889999999888776543322 223333345778999999999999988754
No 120
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=30.23 E-value=2.2e+02 Score=30.91 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=33.0
Q ss_pred cCCcccCC----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 223 YGDMSFST----RGGRFFAVFWILSGTICLAQFFLYLTELYTQSR 263 (343)
Q Consensus 223 yGD~~p~t----~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (343)
|+..+|.. ..+|+.+.+|.++++.+++..++.++..++...
T Consensus 622 FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE~ 666 (1258)
T KOG1053|consen 622 FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEE 666 (1258)
T ss_pred hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56666543 467999999999999999999999988776543
No 121
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=29.11 E-value=60 Score=31.71 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 308 INEEDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 308 i~~e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
++.+|+.....-|+.+|.|++|.++.+|+..
T Consensus 351 Is~~E~~~~~~~F~~~D~d~DG~Is~eEf~~ 381 (391)
T PRK12309 351 ITREEWLGSDAVFDALDLNHDGKITPEEMRA 381 (391)
T ss_pred CcHHHHHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence 3333333345669999999999999999753
No 122
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.77 E-value=1.9e+02 Score=20.04 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 038674 248 LAQFFLYLTELY 259 (343)
Q Consensus 248 ~~~~~~~~~~~~ 259 (343)
+|.+++.+....
T Consensus 30 ~G~llg~l~~~~ 41 (68)
T PF06305_consen 30 LGALLGWLLSLP 41 (68)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 123
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=27.32 E-value=6.2e+02 Score=26.72 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=17.2
Q ss_pred ccccCccccC-----CchhhHHHHHHHHHH-HHHHHHHHHHHHH
Q 038674 101 TVGYGDLVPH-----STLAKLLACVYVFSG-MALVGLILGKAAD 138 (343)
Q Consensus 101 TvGyGd~~p~-----t~~gr~~~~~~~l~G-i~~~~~~~~~~~~ 138 (343)
++|.+|.... ...|.++.++|+++. +.++-++++.+++
T Consensus 570 ~~G~~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~ 613 (743)
T TIGR00870 570 IIGLGDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGN 613 (743)
T ss_pred HcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666665221 234555555555433 2333334444443
No 124
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=26.57 E-value=1.8e+02 Score=24.55 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=18.7
Q ss_pred HHHHHhhcCCCCCcceehhhHhhh
Q 038674 316 LMERFRTLDADQSGNLTTADIMLL 339 (343)
Q Consensus 316 ~~~~f~~ld~~~~g~l~~~d~~~~ 339 (343)
+...|...|.+++|.++.+.+.+.
T Consensus 103 I~~AF~~FD~~~~G~I~~d~lre~ 126 (171)
T KOG0031|consen 103 ILNAFKTFDDEGSGKIDEDYLREL 126 (171)
T ss_pred HHHHHHhcCccCCCccCHHHHHHH
Confidence 455688889999999988877653
No 125
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=26.18 E-value=4.7e+02 Score=25.50 Aligned_cols=140 Identities=10% Similarity=0.075 Sum_probs=0.0
Q ss_pred CccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCcchhhhhhhhhhhhhhhHHHHH
Q 038674 105 GDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTA 184 (343)
Q Consensus 105 Gd~~p~t~~gr~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~lr~le~~~~~~~~~~~ 184 (343)
.+..+-.....+-...-.+.|+.++...+..+.-.-..+......+.+++. ..--+.+.
T Consensus 281 ~~fv~f~~~a~~~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a---------------------~~~l~~f~ 339 (425)
T PF08016_consen 281 RSFVDFQELAQWDQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRA---------------------AKDLLGFF 339 (425)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHH---------------------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhcc-cCccceeeEEEeEeeecccCCcccC--CccchhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 038674 185 TFILLVLIIAGIVFLSVVED-LKFVDALYCVCSTITTLGYGDMSFS--TRGGRFFAVFWIL-SGTICLAQFFLYLTELYT 260 (343)
Q Consensus 185 ~~~~~~~~~~g~~~~~~~e~-~~~~da~y~~~~t~tTvGyGD~~p~--t~~gr~~~~~~~~-~g~~~~~~~~~~~~~~~~ 260 (343)
++.+++++.++.+++..... ..-...+.-++.|+...-.||.... ....++++.++.+ .-+.++-.+++.+..++.
T Consensus 340 ~~~~i~~~~fa~~g~l~fG~~~~~f~s~~~s~~tl~~~l~g~~~~~~~~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~ 419 (425)
T PF08016_consen 340 VIFLIIFLAFAQAGYLLFGSYSEDFSSFSSSLVTLFRMLLGDFDYDELYQANPVLGPLFFFSFMFLVFFILLNLFIAIIN 419 (425)
T ss_pred HHHHHHHHHHHHHHHHhhcCCccccCCHHHHHHHHHHHhcCCCchhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 038674 261 QSRQN 265 (343)
Q Consensus 261 ~~~~~ 265 (343)
+...+
T Consensus 420 ~~y~~ 424 (425)
T PF08016_consen 420 DSYEE 424 (425)
T ss_pred HHhhc
No 126
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=25.23 E-value=1.5e+02 Score=22.03 Aligned_cols=26 Identities=23% Similarity=0.574 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhcCCCCCcceehhhHhh
Q 038674 310 EEDISVLMERFRTLDADQSGNLTTADIML 338 (343)
Q Consensus 310 ~e~i~~~~~~f~~ld~~~~g~l~~~d~~~ 338 (343)
+++++.+.+.+ |.+++|.++.++...
T Consensus 50 ~~~v~~i~~~~---D~d~dG~I~f~eF~~ 75 (88)
T cd05030 50 QKAIDKIFEDL---DTNQDGQLSFEEFLV 75 (88)
T ss_pred HHHHHHHHHHc---CCCCCCcCcHHHHHH
Confidence 77777766555 889999999998764
No 127
>COG3462 Predicted membrane protein [Function unknown]
Probab=25.18 E-value=3.5e+02 Score=21.39 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=25.5
Q ss_pred cceehHHHHHHHHHHcCCCCHHHHHHHHHHHh
Q 038674 290 KLVSVAEFVIYKLKEMGKINEEDISVLMERFR 321 (343)
Q Consensus 290 ~~v~~~e~v~~~L~~~~~i~~e~i~~~~~~f~ 321 (343)
...++++.+.++=-..+.+++|+-.++.++.+
T Consensus 85 e~~sRA~eIlkER~AkGEItEEEY~r~~~~ir 116 (117)
T COG3462 85 ERGSRAEEILKERYAKGEITEEEYRRIIRTIR 116 (117)
T ss_pred ccccHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 34577888888888899999999988877653
No 128
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=24.41 E-value=2.1e+02 Score=23.47 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCCccee
Q 038674 295 AEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLT 332 (343)
Q Consensus 295 ~e~v~~~L~~~~~i~~e~i~~~~~~f~~ld~~~~g~l~ 332 (343)
.+.....+..-.+.++++++++.+++++++.......+
T Consensus 82 ~~~a~n~li~iE~l~~~el~~~~~~~~~~~~~~~~~~~ 119 (132)
T PF04120_consen 82 VKEARNELIDIEDLTEEELEEIRKRYERLAEQARERHD 119 (132)
T ss_pred HHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 33344556777788999999999999888775554433
No 129
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=24.27 E-value=54 Score=27.41 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=35.5
Q ss_pred CCchhhhhhhhhhhcccccCccccCCchhhHHHHHHHHHHHHHHHHH
Q 038674 86 NGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLI 132 (343)
Q Consensus 86 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~~~~~ 132 (343)
-...++.|+...+++|+||+++.|.+..+.......++.+.......
T Consensus 116 ~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 162 (212)
T COG1226 116 LARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSVE 162 (212)
T ss_pred EEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCchhh
Confidence 45667778888999999999999998888777666666555444433
No 130
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=23.89 E-value=81 Score=28.09 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=21.5
Q ss_pred HHHHHHHhhcCCCCCcceehhhHhhh
Q 038674 314 SVLMERFRTLDADQSGNLTTADIMLL 339 (343)
Q Consensus 314 ~~~~~~f~~ld~~~~g~l~~~d~~~~ 339 (343)
.+...-|+.-|.|+||.++..+|..+
T Consensus 124 ~~Wr~vF~~~D~D~SG~I~~sEL~~A 149 (221)
T KOG0037|consen 124 NQWRNVFRTYDRDRSGTIDSSELRQA 149 (221)
T ss_pred HHHHHHHHhcccCCCCcccHHHHHHH
Confidence 34455699999999999999999865
No 131
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=23.74 E-value=2.2e+02 Score=24.27 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=31.8
Q ss_pred ccCCCcceehHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCCcceehhhH
Q 038674 285 DLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTTADI 336 (343)
Q Consensus 285 ~l~~~~~v~~~e~v~~~L~~~~-~i~~e~i~~~~~~f~~ld~~~~g~l~~~d~ 336 (343)
|.+++|.++..++ ...-++.+ -.+.+++.++.+++ |.|++|.++.++.
T Consensus 116 D~D~~Gkis~~~l-krvakeLgenltD~El~eMIeEA---d~d~dgevneeEF 164 (172)
T KOG0028|consen 116 DDDKTGKISQRNL-KRVAKELGENLTDEELMEMIEEA---DRDGDGEVNEEEF 164 (172)
T ss_pred cccCCCCcCHHHH-HHHHHHhCccccHHHHHHHHHHh---cccccccccHHHH
Confidence 4566777764332 22222333 46888888888777 7899999998875
No 132
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=22.85 E-value=59 Score=21.71 Aligned_cols=24 Identities=33% Similarity=0.869 Sum_probs=16.9
Q ss_pred eecccCCcccCCccchhHHHHHHHHHH
Q 038674 219 TTLGYGDMSFSTRGGRFFAVFWILSGT 245 (343)
Q Consensus 219 tTvGyGD~~p~t~~gr~~~~~~~~~g~ 245 (343)
+++|.||.. ..|.+...+|.+.|.
T Consensus 1 ~~~G~~Daa---~Tgi~~G~l~~~~~~ 24 (53)
T PF11167_consen 1 TTIGLGDAA---DTGILYGLLWAIKGI 24 (53)
T ss_pred CeeeccCHH---HHHHHHHHHHHHHHH
Confidence 578999965 457777777777554
No 133
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=22.39 E-value=93 Score=22.39 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCCCCCcceehhhHhhh
Q 038674 314 SVLMERFRTLDADQSGNLTTADIMLL 339 (343)
Q Consensus 314 ~~~~~~f~~ld~~~~g~l~~~d~~~~ 339 (343)
+++.+.|+.+ +++++.++.+||.-.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~ 30 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRS 30 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHH
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHH
Confidence 3566789999 888899999998654
No 134
>PRK01844 hypothetical protein; Provisional
Probab=22.23 E-value=3.2e+02 Score=19.89 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHH
Q 038674 296 EFVIYKLKEMGK-INEEDISVLMERF 320 (343)
Q Consensus 296 e~v~~~L~~~~~-i~~e~i~~~~~~f 320 (343)
+-+..+..++|+ -++..+.+..+..
T Consensus 42 ~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 42 QMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345666777775 4788888877765
No 135
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=21.45 E-value=1e+02 Score=23.05 Aligned_cols=27 Identities=15% Similarity=0.390 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhcCC-CC-CcceehhhHh
Q 038674 311 EDISVLMERFRTLDA-DQ-SGNLTTADIM 337 (343)
Q Consensus 311 e~i~~~~~~f~~ld~-~~-~g~l~~~d~~ 337 (343)
+.+..+..-|++-|. ++ +|.++.+|+.
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~ 35 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELK 35 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHH
Confidence 344445555555554 34 5556655543
No 136
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=21.36 E-value=80 Score=21.28 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=14.9
Q ss_pred ccceeeEEEe---------EeeecccCCcc
Q 038674 207 FVDALYCVCS---------TITTLGYGDMS 227 (343)
Q Consensus 207 ~~da~y~~~~---------t~tTvGyGD~~ 227 (343)
-.|..||+++ -+--|||||-.
T Consensus 17 eld~~yfavtlkvef~tgkllVcigFGDTl 46 (60)
T PF04694_consen 17 ELDCAYFAVTLKVEFKTGKLLVCIGFGDTL 46 (60)
T ss_pred hhcceeEEEEEEEEEecCcEEEEEecchHH
Confidence 4688899875 24468899853
No 137
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.31 E-value=7.7e+02 Score=24.05 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 038674 253 LYLTELYTQS 262 (343)
Q Consensus 253 ~~~~~~~~~~ 262 (343)
-.+.++..++
T Consensus 204 ia~~D~~~qr 213 (386)
T PRK12468 204 MVGFDVFYQI 213 (386)
T ss_pred HHHHHHHHHH
Confidence 3444544433
No 138
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.31 E-value=7.5e+02 Score=23.87 Aligned_cols=25 Identities=16% Similarity=0.079 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038674 238 VFWILSGTICLAQFFLYLTELYTQS 262 (343)
Q Consensus 238 ~~~~~~g~~~~~~~~~~~~~~~~~~ 262 (343)
.+..++...++.+++-.+.++..++
T Consensus 189 ~~~~l~~~~~~~~~via~~D~~~qr 213 (359)
T PRK05702 189 LVLKLLLLVVLALLVIAAIDVPFQR 213 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444445555544
No 139
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=21.23 E-value=5.1e+02 Score=30.15 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=21.9
Q ss_pred EEeEeeecccCCcccCCccchhHHHHHHHHHHHHH
Q 038674 214 VCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICL 248 (343)
Q Consensus 214 ~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~ 248 (343)
+++|.++||.-|..-.++.-.++..+-..+|+.++
T Consensus 2276 a~itglavgldDfCwlS~h~~LiWsfagPigl~i~ 2310 (2531)
T KOG4289|consen 2276 ALITGLAVGLDDFCWLSPHDTLIWSFAGPIGLVIL 2310 (2531)
T ss_pred hheeeeeecccceeecccchheeeeecccceeeeh
Confidence 46899999999987666544444433333444433
No 140
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.10 E-value=7.5e+02 Score=23.84 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038674 244 GTICLAQFFLYLTELYTQS 262 (343)
Q Consensus 244 g~~~~~~~~~~~~~~~~~~ 262 (343)
+..+..+++-.+.++..++
T Consensus 197 ~~~~~~~~via~~D~~~q~ 215 (358)
T PRK13109 197 SAVAIATIVLVALDLVWAR 215 (358)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555544
No 141
>PRK12438 hypothetical protein; Provisional
Probab=20.90 E-value=5.8e+02 Score=28.24 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=18.8
Q ss_pred hcccccCccccCCchhhHHHHHHHHHHHHH
Q 038674 99 MTTVGYGDLVPHSTLAKLLACVYVFSGMAL 128 (343)
Q Consensus 99 ~tTvGyGd~~p~t~~gr~~~~~~~l~Gi~~ 128 (343)
++.-||-|+...=|.-.+++++-.++++.+
T Consensus 245 ~~GAgYTDv~a~LPa~~iL~~ia~i~Av~f 274 (991)
T PRK12438 245 FTGAGYTDINAVLPAKLILVAIAVLCAVAF 274 (991)
T ss_pred EecCChhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 566788888877665555555554444443
No 142
>PRK08156 type III secretion system protein SpaS; Validated
Probab=20.68 E-value=6.2e+02 Score=24.48 Aligned_cols=151 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 038674 116 LLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAG 195 (343)
Q Consensus 116 ~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~lr~le~~~~~~~~~~~~~~~~~~~~~g 195 (343)
...++..++.+.+..++++.+++.+.....-......-+.+++ +|-.-.+++=..+....+.-.++=++++..+.
T Consensus 74 ~~~~~~~~~p~~~~~~~~~i~~~~~Q~G~~fs~k~l~Pk~~rl-----NP~~GlKriFS~~~lvel~KsllKv~li~~v~ 148 (361)
T PRK08156 74 MIIFLKILIPFLLLCLLAGALPTLLQTRFVLATEAIKLNFSAL-----NPVKGLKKIFSLRTVKEFVKALLYLIVFALTA 148 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccccCCCCchhc-----CHhHhHHHhcCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhcccCccceeeEEEeEeeecccCCcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038674 196 IVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQ 275 (343)
Q Consensus 196 ~~~~~~~e~~~~~da~y~~~~t~tTvGyGD~~p~t~~gr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 275 (343)
.+++ ++..+.+ ++.....|.....-+...+..++...++++++-.+.++..+++.... +-+
T Consensus 149 ~~~~-----~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k-----~lk 209 (361)
T PRK08156 149 YVFW-----KNYKKEI---------FSQLNGNIVGLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMK-----DMK 209 (361)
T ss_pred HHHH-----HHHHHHH---------HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCC
Q ss_pred cccchhhhhccCCCc
Q 038674 276 LTFSDLEAADLDHDK 290 (343)
Q Consensus 276 ~~~~~l~~~~l~~~~ 290 (343)
|+++|++.+..+..|
T Consensus 210 MSkqEvKdE~Ke~EG 224 (361)
T PRK08156 210 MDKQEVKREYKEQEG 224 (361)
T ss_pred CCHHHHHHHHHhccC
No 143
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=20.37 E-value=7.7e+02 Score=23.67 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038674 242 LSGTICLAQFFLYLTELYTQSR 263 (343)
Q Consensus 242 ~~g~~~~~~~~~~~~~~~~~~~ 263 (343)
+++.+++.+++-.+.++..+++
T Consensus 186 l~~~~~~~~~via~~D~~~qr~ 207 (349)
T PRK12721 186 LWGGLLACYLVFGILDYSFQRY 207 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444455555443
No 144
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=20.35 E-value=49 Score=31.79 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=15.8
Q ss_pred hhhhhhhhhhhcccccCccccC
Q 038674 89 LDSIYFCIVTMTTVGYGDLVPH 110 (343)
Q Consensus 89 ~~a~y~~~~t~tTvGyGd~~p~ 110 (343)
-.++.+.+....+-|+.+..|.
T Consensus 128 ngsi~~~~~af~~~gr~~~~P~ 149 (350)
T PF15065_consen 128 NGSIAFKLQAFSTSGRDAQLPR 149 (350)
T ss_pred CCeEEEEEEEecCCCCCccCcc
Confidence 4567777777777777777775
Done!