RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 038674
(343 letters)
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 95.3 bits (236), Expect = 1e-22
Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 16/195 (8%)
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVK 150
+ +F +TT+GYG++ + +L Y G+ L G++L D L + +
Sbjct: 119 AFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGH 178
Query: 151 AMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDA 210
+ E +V ++ L+ ++ +ED ++A
Sbjct: 179 IEAIFLKWH----------VPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEA 228
Query: 211 LYCVCSTITTLGYGDMSFSTR------GGRFFAVFWILSGTICLAQFFLYLTELYTQSRQ 264
+Y V T+TT+G+GD + FWIL G A + +
Sbjct: 229 IYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288
Query: 265 NSFVKWVLTRQLTFS 279
+ + + S
Sbjct: 289 RTRAEMGGLTAQSNS 303
Score = 53.7 bits (128), Expect = 2e-08
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 48 MSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDL 107
+ + +L+ + ++ F + L++IYF IVT+TTVG+GD
Sbjct: 192 LVRVLSAMLFLLIGCLLFVLTPTFVFCYMED-------WSKLEAIYFVIVTLTTVGFGDY 244
Query: 108 VP------HSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
V S + L ++ G+A +L ++L +
Sbjct: 245 VAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288
Score = 39.0 bits (90), Expect = 0.002
Identities = 16/82 (19%), Positives = 28/82 (34%)
Query: 189 LVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGTICL 248
S A + + ITT+GYG+++ T GR F +F+ L G
Sbjct: 98 GADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLF 157
Query: 249 AQFFLYLTELYTQSRQNSFVKW 270
+ + S ++
Sbjct: 158 GILLAGVGDRLGSSLRHGIGHI 179
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 91.0 bits (225), Expect = 3e-21
Identities = 41/245 (16%), Positives = 76/245 (31%), Gaps = 18/245 (7%)
Query: 31 PMEQNDKKSLLPLESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLD 90
P E ++ L L+ + + E Q L +G + + + Q G
Sbjct: 37 PYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQASGNWNWDFTS 96
Query: 91 SIYFCIVTMTTVGYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVK 150
+++F ++T GYG VP S K +Y G+ L L + V
Sbjct: 97 ALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVL 156
Query: 151 AMYNYENASAGSVSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDA 210
+ V L+ + I VF + +D F+++
Sbjct: 157 YFHIRWGF-----------SKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLES 205
Query: 211 LYCVCSTITTLGYGDMSFSTRGG-------RFFAVFWILSGTICLAQFFLYLTELYTQSR 263
Y +++T+G GD + ++L G I + EL+ +
Sbjct: 206 FYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKK 265
Query: 264 QNSFV 268
Sbjct: 266 FRKMF 270
Score = 34.8 bits (79), Expect = 0.027
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 188 LLVLIIAGIVFL---SVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSG 244
+L G+ L S + F AL+ + ++T GYG + GG+ F + + + G
Sbjct: 72 VLEASNYGVSVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIG 131
Query: 245 TICLAQFFLYLTELYTQSRQNSFVKW 270
F + + T V +
Sbjct: 132 IPFTLLFLTAVVQRITVHVTRRPVLY 157
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 81.0 bits (200), Expect = 2e-19
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 180 KLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVF 239
+ + ++ +I+G +F S VE L+ +DALY T+TT+GYGD S T G+ F +
Sbjct: 6 EFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTIL 65
Query: 240 WILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTR 274
+I G + F ++ +L + S + ++ R
Sbjct: 66 YIFIG---IGLVFGFIHKLAVNVQLPSILSNLVPR 97
Score = 73.7 bits (181), Expect = 9e-17
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 54 RFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTL 113
F+ + +L + L G + + + E +D++YF +VT+TTVGYGD P +
Sbjct: 6 EFQVLFVLTILTLISGTIFYSTV------EGLR-PIDALYFSVVTLTTVGYGDFSPQTDF 58
Query: 114 AKLLACVYVFSGMALVGLILGKAADYLVEKQQL 146
K+ +Y+F G+ LV + K A + L
Sbjct: 59 GKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 78.8 bits (194), Expect = 2e-18
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 163 VSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLG 222
++ +L+ + + ++ +I+G +F S VE L+ +DALY T+TT+G
Sbjct: 6 LTLKRMLRACLRAWKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVG 65
Query: 223 YGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTR 274
G+ S T G+ F + +I G + F ++ +L + S + ++ R
Sbjct: 66 AGNFSPQTDFGKIFTILYIFIG---IGLVFGFIHKLAVNVQLPSILSNLVPR 114
Score = 75.7 bits (186), Expect = 3e-17
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 43 LESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTV 102
L + L + ++ F+ + +L + L G + + + E +D++YF +VT+TTV
Sbjct: 12 LRACLRAWKDKEFQVLFVLTILTLISGTIFYSTV------EGLR-PIDALYFSVVTLTTV 64
Query: 103 GYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQL 146
G G+ P + K+ +Y+F G+ LV + K A + L
Sbjct: 65 GAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 108
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 76.2 bits (188), Expect = 7e-18
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 53 IRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHST 112
+ ++LLL++ + G F I + S+Y+ VT+ TVGYGD PH+
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGE-------SWTVSLYWTFVTIATVGYGDYSPHTP 53
Query: 113 LAKLLACVYVFSGMALVGLILGKAADYLV 141
L C + G+ + + + ++L+
Sbjct: 54 LGMYFTCTLIVLGIGTFAVAVERLLEFLI 82
Score = 65.1 bits (159), Expect = 1e-13
Identities = 23/79 (29%), Positives = 32/79 (40%)
Query: 180 KLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVF 239
++L +II G +E + +LY TI T+GYGD S T G +F
Sbjct: 2 PATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCT 61
Query: 240 WILSGTICLAQFFLYLTEL 258
I+ G A L E
Sbjct: 62 LIVLGIGTFAVAVERLLEF 80
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 75.4 bits (185), Expect = 1e-16
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 163 VSAAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLG 222
++ +LK + + + + +G +F S VE L+ +DALY T+TT+G
Sbjct: 9 LTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVG 68
Query: 223 YGDMSFSTRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVK 269
G+ S T G+ F + +I G + F ++ +L + S +
Sbjct: 69 DGNFSPQTDFGKVFTILYIFIG---IGLVFGFIHKLAVNVQLPSILS 112
Score = 72.3 bits (177), Expect = 1e-15
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 43 LESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTV 102
L++ L + ++ F+ + +L L G + + + E LD++YF +VT+TTV
Sbjct: 15 LKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTV------EGLR-PLDALYFSVVTLTTV 67
Query: 103 GYGDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQL 146
G G+ P + K+ +Y+F G+ LV + K A + L
Sbjct: 68 GDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 111
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 76.3 bits (188), Expect = 7e-16
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 53 IRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHST 112
+ ++LLL++ + G F I + S+Y+ VT+ TVGYGD P +
Sbjct: 18 VPATRILLLVLAVIIYGTAGFHFIEGE-------SWTVSLYWTFVTIATVGYGDYSPSTP 70
Query: 113 LAKLLACVYVFSGMALVGLILGKAADYLVEKQQLLLVKAM 152
L + G+ + + + ++L+ ++Q+ L+ +
Sbjct: 71 LGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLI 110
Score = 67.1 bits (164), Expect = 9e-13
Identities = 27/93 (29%), Positives = 38/93 (40%)
Query: 177 VKYKLVTATFILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFF 236
+K ++L +II G +E + +LY TI T+GYGD S ST G +F
Sbjct: 16 LKVPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYF 75
Query: 237 AVFWILSGTICLAQFFLYLTELYTQSRQNSFVK 269
V I+ G A L E Q +
Sbjct: 76 TVTLIVLGIGTFAVAVERLLEFLINREQMKLMG 108
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 68.6 bits (168), Expect = 8e-15
Identities = 19/88 (21%), Positives = 35/88 (39%)
Query: 58 VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLL 117
L L + G D+I++ + T TTVGYGD P + + +
Sbjct: 11 AEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKV 70
Query: 118 ACVYVFSGMALVGLILGKAADYLVEKQQ 145
A + +G+ + L+ A V +++
Sbjct: 71 AEQVMKAGIEVFALVTAALATDFVRREE 98
Score = 47.1 bits (112), Expect = 3e-07
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 181 LVTATFILLVLIIAGIVFLSVVE----DLKFV---DALYCVCSTITTLGYGDMSFSTRGG 233
A L ++ E + DA++ T TT+GYGD T G
Sbjct: 8 AQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEG 67
Query: 234 RFFAVFWILSGTICLA 249
R A + +G A
Sbjct: 68 RKVAEQVMKAGIEVFA 83
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 68.4 bits (167), Expect = 3e-14
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 53 IRFRQV---LLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVP 109
+ +R +LLV L G+ L G + ++++ + T TTVGYGDL P
Sbjct: 3 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP 62
Query: 110 HSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
+ +L+A V + +G+ GL+ A + V ++Q
Sbjct: 63 VTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98
Score = 48.3 bits (115), Expect = 3e-07
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 181 LVTATFILLVLIIAGIVFLSVVE----DLKFV---DALYCVCSTITTLGYGDMSFSTRGG 233
AT +L+++++AG + E + + AL+ T TT+GYGD+ T G
Sbjct: 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG 67
Query: 234 RFFAVFWILSGTICLA 249
R AV +++G
Sbjct: 68 RLVAVVVMVAGITSFG 83
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 67.4 bits (165), Expect = 4e-14
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 58 VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLL 117
+LLV L G+ L G + ++++ T TTV YGDL P + +L+
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLV 91
Query: 118 ACVYVFSGMALVGLILGKAADYLVEKQQ 145
A V + +G+ GL+ A + V ++Q
Sbjct: 92 AVVVMVAGITSFGLVTAALATWFVGREQ 119
Score = 46.2 bits (110), Expect = 1e-06
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 181 LVTATFILLVLIIAGIVFLSVVE----DLKFV---DALYCVCSTITTLGYGDMSFSTRGG 233
AT +L+++++AG + E + + AL+ C T TT+ YGD+ T G
Sbjct: 29 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWG 88
Query: 234 RFFAVFWILSGTICLA 249
R AV +++G
Sbjct: 89 RLVAVVVMVAGITSFG 104
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 67.5 bits (165), Expect = 6e-14
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 58 VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLL 117
+LLV L G+ L G D++++ + T TTVGYGDL P + + +
Sbjct: 55 ATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCV 114
Query: 118 ACVYVFSGMALVGLILGKAADYLVEKQQ 145
A V + +G+ GL+ A + V ++Q
Sbjct: 115 AVVVMVAGITSYGLVFAAVATWFVGREQ 142
Score = 47.1 bits (112), Expect = 8e-07
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 181 LVTATFILLVLIIAGIVFLSVVE----DLKFV---DALYCVCSTITTLGYGDMSFSTRGG 233
AT +L+++++AG + E + DAL+ T TT+GYGD+ T G
Sbjct: 52 AGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWG 111
Query: 234 RFFAVFWILSGTICLA 249
R AV +++G
Sbjct: 112 RCVAVVVMVAGITSYG 127
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 68.4 bits (168), Expect = 1e-13
Identities = 23/92 (25%), Positives = 52/92 (56%)
Query: 43 LESALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTV 102
L + + ++IRF + ++ + GA +++ + V D++++ +VT TTV
Sbjct: 121 LSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTV 180
Query: 103 GYGDLVPHSTLAKLLACVYVFSGMALVGLILG 134
GYGD+VP + + K++ + +G++ + L++G
Sbjct: 181 GYGDVVPATPIGKVIGIAVMLTGISALTLLIG 212
Score = 43.8 bits (104), Expect = 2e-05
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 181 LVTATFILLVLIIAGIVFLSVVE----DLKFV---DALYCVCSTITTLGYGDMSFSTRGG 233
+++ ++ G + +VE + DAL+ T TT+GYGD+ +T G
Sbjct: 133 FYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIG 192
Query: 234 RFFAVFWILSGTICLA 249
+ + +L+G L
Sbjct: 193 KVIGIAVMLTGISALT 208
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 66.5 bits (162), Expect = 2e-13
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 58 VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLL 117
+LLV L G+ L G + ++++ + T TTVGYGDL P + +L+
Sbjct: 38 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLV 97
Query: 118 ACVYVFSGMALVGLILGKAADYLVEKQQ 145
A V + +G+ GL+ A + V ++Q
Sbjct: 98 AVVVMVAGITSFGLVTAALATWFVGQEQ 125
Score = 47.6 bits (113), Expect = 7e-07
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 181 LVTATFILLVLIIAGIVFLSVVE----DLKFV---DALYCVCSTITTLGYGDMSFSTRGG 233
AT +L+++++AG + E + + AL+ T TT+GYGD+ T G
Sbjct: 35 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG 94
Query: 234 RFFAVFWILSGTICLA 249
R AV +++G
Sbjct: 95 RLVAVVVMVAGITSFG 110
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 67.0 bits (163), Expect = 2e-12
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 56 RQVLLLLVGYLGVGALCF----FLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHS 111
+ L LL+ +L +G + F + + + + D+ ++ +V+MTTVGYGD+VP +
Sbjct: 340 MRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTT 399
Query: 112 TLAKLLACVYVFSGMALVGL 131
K++ + +G+ + L
Sbjct: 400 IGGKIVGSLCAIAGVLTIAL 419
Score = 50.1 bits (119), Expect = 6e-07
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 178 KYKLVTATFILLVLII--AGIVFL--SVVEDLKFV---DALYCVCSTITTLGYGDMSFST 230
+L F L + +I + V+ + D +F DA + ++TT+GYGDM +T
Sbjct: 340 MRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTT 399
Query: 231 RGGRFFAVFWILSGTICLA 249
GG+ ++G + +A
Sbjct: 400 IGGKIVGSLCAIAGVLTIA 418
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 64.7 bits (157), Expect = 5e-12
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 52 EIRFRQVLLLLVG-YLGVG---ALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDL 107
+ + + L+ G YL AL + I+ + D+ +F + TM T+GYG L
Sbjct: 43 TVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL 102
Query: 108 VPHSTLAKLLACVYVFSGMALVGLILG 134
+P LA L + GM + +
Sbjct: 103 IPIGPLANTLVTLEALCGMLGLAVAAS 129
Score = 47.0 bits (111), Expect = 3e-06
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 6/101 (5%)
Query: 181 LVTATFILLVLIIAGIVFL-----SVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
L+T +++ + A F DA + T+ T+GYG +
Sbjct: 52 LITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANT 111
Query: 236 FAVFWILSGTICLA-QFFLYLTELYTQSRQNSFVKWVLTRQ 275
L G + LA L + F ++
Sbjct: 112 LVTLEALCGMLGLAVAASLIYARFTRPTAGVLFSSRMVISD 152
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 64.1 bits (156), Expect = 1e-11
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 56 RQVLLLLVGYLGVGALCF----FLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHS 111
+ L+ + GV ++I I+ EK + ++++ +VT++T GYGD +P S
Sbjct: 126 ARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQS 185
Query: 112 TLAKLLACVYVFSGMALVGLILG 134
++LA + SG+ + GL G
Sbjct: 186 FAGRVLAGAVMMSGIGIFGLWAG 208
Score = 44.8 bits (106), Expect = 2e-05
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 178 KYKLVTATFILLVLIIAGIVFLSVVE----DLKFV---DALYCVCSTITTLGYGDMSFST 230
L+ T + V++ A + V+E KF A++ T++T GYGD +
Sbjct: 126 ARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQS 185
Query: 231 RGGRFFAVFWILSGTICLA 249
GR A ++SG
Sbjct: 186 FAGRVLAGAVMMSGIGIFG 204
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 61.4 bits (148), Expect = 9e-11
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 52 EIRFRQVLLLL----VGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDL 107
++ + L V + AL + L I + G + + +F + T+ TVGYGD+
Sbjct: 57 KVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM 116
Query: 108 VPHSTLAKLLACVYVFSGMALVGLILG 134
P + A +A + +F GM+ + L G
Sbjct: 117 HPQTVYAHAIATLEIFVGMSGIALSTG 143
Score = 45.9 bits (108), Expect = 8e-06
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 181 LVTATFILLVLIIAGIVFLSVVEDL------KFVDALYCVCSTITTLGYGDMSFSTRGGR 234
A ++ + +++ + FV A + T+ T+GYGDM T
Sbjct: 65 ASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAH 124
Query: 235 FFAVFWILSGTICLAQFFLYLTELYTQSRQN 265
A I G +A + + + R
Sbjct: 125 AIATLEIFVGMSGIALSTGLVFARFARPRAK 155
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 59.3 bits (143), Expect = 4e-10
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 54 RFRQVLLLLVGYLGVG---ALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPH 110
+ L V +L + A + L I + G + +F + T+ TVGYGD+ P
Sbjct: 42 WRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQ 101
Query: 111 STLAKLLACVYVFSGMALVGLILG 134
+ A +A + +F GM+ + L G
Sbjct: 102 TVYAHWIATLEIFVGMSSIALATG 125
Score = 47.0 bits (111), Expect = 4e-06
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 9/104 (8%)
Query: 181 LVTATFILLVLIIAGIVFLSVVE-----DLKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
+ F+LL A + L F A + T+ T+GYGDM T +
Sbjct: 48 SLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHW 107
Query: 236 FAVFWILSGTICLAQ----FFLYLTELYTQSRQNSFVKWVLTRQ 275
A I G +A F+ +++ ++ F + +
Sbjct: 108 IATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISM 151
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 2e-05
Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 88/229 (38%)
Query: 17 LLSSKPVDYSNLNEPM--EQNDKKSLLPLESALMSQEEI---RFRQVLLLLVGYLGVGAL 71
++ VD E + E N+ + S + + +F Q L L+ A
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRS---EKGLLSATQFTQPALTLMEK----AA 1743
Query: 72 CFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTL----AKLLACV-YVFS-- 124
F ++ K D+ F G HS L A LA + V S
Sbjct: 1744 -FEDLK-----SKGLIPADA-TFA---------G----HS-LGEYAA--LASLADVMSIE 1780
Query: 125 ---------------------------GMA-----LVGLILGKAA-DYLVEK-----QQL 146
GM V + A Y+VE+ L
Sbjct: 1781 SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 147 LLVKAMYNYEN---ASAGSVSA----AEVLKDVETHKVKYKLVTATFIL 188
+ + YN EN +AG + A VL ++ K+ + + L
Sbjct: 1841 VEI-VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 35.8 bits (82), Expect = 0.024
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 53/173 (30%)
Query: 102 VGYG-DLVPHSTLAKLL---ACVYVFS--GMALVGLILG--KAADYLVEKQQLLLVKAMY 153
G G DL S A+ + A + G +++ +++ ++ ++ Y
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 154 N---YENASAGSVSAAEVLKDVETHKVKY------KLVTAT-F----ILLVLIIAGIVFL 199
+ +E G + ++ K++ H Y L++AT F + L+
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK------- 1741
Query: 200 SVVEDLK---FVDALYCVC--STITTLG-Y-------GDMSFST-------RG 232
+ EDLK + A S LG Y MS + RG
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHS----LGEYAALASLADVMSIESLVEVVFYRG 1790
Score = 30.0 bits (67), Expect = 1.3
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 31/111 (27%)
Query: 248 LAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLE------------AADL--DHDKLVS 293
+ +F Y++ L S+ F + VL L ++ E AA L ++D +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQ-VL--NLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 294 VAEFVI---YKLKEMGK--INEEDISVLMERFRTLDADQSGNLTTADIMLL 339
+ +I + M K +++ S L A GN A ++ +
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSAL------FRAVGEGN---AQLVAI 159
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 44.4 bits (104), Expect = 3e-05
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 58 VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVP--HSTLAK 115
++ L+ Y+ NG + + F I T TT+GYG V
Sbjct: 62 MIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGI 121
Query: 116 LLACVYVFSGMALVGLILG 134
+L + G + ++G
Sbjct: 122 ILLLIQSVLGSIVNAFMVG 140
Score = 36.3 bits (83), Expect = 0.012
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 207 FVDALYCVCSTITTLGYGDMSFS--TRGGRFFAVFWILSGTICLAQFF 252
FV A T TT+GYG + G + + G+I A
Sbjct: 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMV 139
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 42.1 bits (98), Expect = 1e-04
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 86 NGVLDSIYFCIVTMTTVGYG--DLVPHSTLAKLLACVYVFSGMALVGLILG 134
NG + + F I T TT+GYG + LA + V G + ++G
Sbjct: 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIG 143
Score = 33.6 bits (76), Expect = 0.072
Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 28/121 (23%)
Query: 181 LVTATFILLVLIIAGIVFL-------------------SVVEDLKFVDALYCVCSTITTL 221
L + F++ L+ I +L V++ FV A T TT+
Sbjct: 50 LFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTI 109
Query: 222 GYGDMSFS--TRGGRFFAVFWILSGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFS 279
GYG + F V + G I + + + ++ + L FS
Sbjct: 110 GYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKK-------RAQTLLFS 162
Query: 280 D 280
Sbjct: 163 H 163
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 39.5 bits (92), Expect = 7e-04
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKL 302
+G +C + + E+ S V+ + R S + L++ EF+ ++L
Sbjct: 62 TGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRL 121
Query: 303 KEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
+ + L F +DA + + +
Sbjct: 122 MLCYIYDFFE---LTVMFDEIDASGNMLVDEEEF 152
Score = 27.6 bits (61), Expect = 5.4
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 309 NEEDISVLMERFRTLDADQSGNLTTADI 336
E +E F+ D +++G L ++
Sbjct: 43 TAEAKQRRIELFKKFDKNETGKLCYDEV 70
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 36.9 bits (86), Expect = 0.004
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
D + + + EF+ M + E + F LD G +T D+
Sbjct: 79 CRKWDRNGSGTLDLEEFLRALRPPMSQAREAV---IAAAFAKLDRSGDGVVTVDDL 131
Score = 30.4 bits (69), Expect = 0.59
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 282 EAADLDHDKLVSVAEFVIYKLKEMG-KINEEDISVLMERFRTLDADQSGNLTT 333
+ + + KL+ I L FR LD D S +L
Sbjct: 4 LVPRGPLGSHMDAVDATMEKLRAQCLSRGASGIQGLARFFRQLDRDGSRSLDA 56
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 36.9 bits (86), Expect = 0.004
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM 337
L+A D++ ++ EF+ + I L F +D D+ G ++ +DI+
Sbjct: 79 LQALDINDRGNITYTEFMAGCYRWK-NIESTF---LKAAFNKIDKDEDGYISKSDIV 131
Score = 29.6 bits (67), Expect = 0.94
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 308 INEEDISVLMERFRTLDADQSGNLTTADI 336
+ I + E F LD + +G+L+ +I
Sbjct: 33 VINNHIKYINELFYKLDTNHNGSLSHREI 61
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 36.3 bits (84), Expect = 0.005
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKL 302
G++ QF L + + SF + + + + D + D ++ EF + L
Sbjct: 72 DGSLTEEQFIRVTENLIFEQGEASFNRVL--GPVVKGIVGMCDKNADGQINADEFAAW-L 128
Query: 303 KEMGKINEEDISVLMERFRTLDADQSGNLT 332
+G +++ + + E F +D + +G L+
Sbjct: 129 TALG-MSKAEAA---EAFNQVDTNGNGELS 154
Score = 35.5 bits (82), Expect = 0.011
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDIS-----VLMERFRTLDADQSGNLTTAD 335
+ A + D ++ +F+ + + E + V+ D + G + +
Sbjct: 64 AKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADE 123
Score = 29.0 bits (65), Expect = 1.8
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 310 EEDISVLMERFRTLDADQSGNLTTADIMLL 339
L +RF D D +G L AD
Sbjct: 3 AIASDRLKKRFDRWDFDGNGALERADFEKE 32
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 35.6 bits (82), Expect = 0.011
Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEED------ISVLMERFRTLDADQSGNLTTA 334
+ AD + D+ V+ E++ + + + + + + F D +
Sbjct: 70 RKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKH 129
Query: 335 DIMLLQQS 342
+ + S
Sbjct: 130 EYSTVYMS 137
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 34.8 bits (81), Expect = 0.011
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
++ D D + + EF + G+ +D L ++ +D D G LT ++
Sbjct: 42 FKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEV 97
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 33.3 bits (77), Expect = 0.011
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 282 EAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLT 332
+ D++ D VS E + K+ NE+ + ++ + DAD +G +
Sbjct: 7 KEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSI---DADGNGEID 54
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 35.3 bits (82), Expect = 0.015
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
L++ D D + + +EFV + + ++ E L+ F+ D+D SG +T ++
Sbjct: 93 LQSVDFDRNGYIEYSEFVTVCMDKQLLLSRER---LLAAFQQFDSDGSGKITNEEL 145
Score = 28.0 bits (63), Expect = 3.0
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 308 INEEDISVLMERFRTLDADQSGNLTT 333
E+ L + FR LD + G L
Sbjct: 34 TTLEETKELTQIFRQLDNNGDGQLDR 59
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 34.9 bits (81), Expect = 0.020
Identities = 8/56 (14%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
L D + + +F+ + + + +E + F+ D D +G ++ ++
Sbjct: 99 LRDIDSNASGQIHYTDFLAATIDKQTYLKKEV---CLIPFKFFDIDGNGKISVEEL 151
Score = 30.3 bits (69), Expect = 0.71
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 301 KLKEMG------KINEEDISVLMERFRTLDADQSGNLTT 333
+LK++ + + +I+ L F LD D SG L++
Sbjct: 38 ELKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSS 76
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 34.3 bits (79), Expect = 0.021
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISV----LMERFRTLDADQSGNLTTAD 335
AD D D+ ++ EFV +K + + + L D D G +T AD
Sbjct: 61 AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVAD 119
Score = 27.0 bits (60), Expect = 5.8
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 316 LMERFRTLDADQSGNLTTADIMLL 339
+ RF T D D +G++ +D
Sbjct: 6 IAARFTTFDQDGNGHIDRSDFSGA 29
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 34.1 bits (79), Expect = 0.021
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 309 NEEDISVLMERFRTLDADQSGNLTTADIMLL 339
+ ++I L +RF+ LD D SG+L+ + M L
Sbjct: 1 DADEIKRLGKRFKKLDLDNSGSLSVEEFMSL 31
Score = 31.0 bits (71), Expect = 0.25
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
++ D D + V EF+ + K ++E L FR D D+ G ++ ++
Sbjct: 44 IDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQ--KLRFAFRIYDMDKDGYISNGEL 97
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 34.1 bits (79), Expect = 0.029
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
L+ D D + EF+ L +++++ + FR D D G +TTA++
Sbjct: 93 LDQIDSDGSGKIDYTEFIAAALDRK-QLSKKL---IYCAFRVFDVDNDGEITTAEL 144
Score = 31.8 bits (73), Expect = 0.21
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 301 KLKEMG------KINEEDISVLMERFRTLDADQSGNLTT 333
K +++ + N+ D+ L F LD D G +T
Sbjct: 33 KFQKLAMTIIAQQSNDYDVEKLKSTFLVLDEDGKGYITK 71
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 34.0 bits (79), Expect = 0.029
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
++AAD+D+ + EF+ L E+ L F D D SG +T ++
Sbjct: 69 MQAADVDNSGTIDYKEFIAATLHLNKIEREDH---LFAAFTYFDKDGSGYITPDEL 121
Score = 28.6 bits (65), Expect = 1.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 301 KLKEM------GKINEEDISVLMERFRTLDADQSGNLTT 333
K K+M ++EE+I+ L E F +DAD+SG +T
Sbjct: 8 KFKKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITF 46
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 34.3 bits (78), Expect = 0.039
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFV---- 298
+G I + + + + + + +Q+ S + A D D + + E
Sbjct: 25 NGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMIL 84
Query: 299 ------IYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
+ + ++ M+ +R DAD SG ++ A++
Sbjct: 85 PQEENFLLIFRREAPLDNSVE--FMKIWRKYDADSSGYISAAEL 126
Score = 32.7 bits (74), Expect = 0.13
Identities = 15/105 (14%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFV---- 298
SG I A+ +L +L+ Q ++ + + T + ++ D + D + + +
Sbjct: 118 SGYISAAELKNFLKDLFLQHKKK--IPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILA 175
Query: 299 -------IYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
+K+ ++ + + F D ++G L ++
Sbjct: 176 LQENFLLQFKMDASSQVERKR--DFEKIFAHYDVSRTGALEGPEV 218
Score = 27.3 bits (60), Expect = 6.8
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 310 EEDISVLMERFRTLDADQSGNLTT 333
D + ++ ++ DAD +G +
Sbjct: 7 NLDAAGFLQIWQHFDADDNGYIEG 30
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 33.5 bits (77), Expect = 0.040
Identities = 7/62 (11%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 283 AADLDHDKLVSVAEFVIY--KLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQ 340
+ K + F+ ++ + + L FR +D ++ N++ + +
Sbjct: 61 LTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFF 120
Query: 341 QS 342
Sbjct: 121 GM 122
Score = 30.8 bits (70), Expect = 0.33
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 309 NEEDISVLMERFRTLDADQSGNLTTADIMLL 339
++ + + F +D D+ G +T D +
Sbjct: 1 SDLWVQKMKTYFNRIDFDKDGAITRMDFESM 31
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 33.7 bits (77), Expect = 0.046
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 281 LEAADLDHDKLVSVAEFV------IYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTA 334
AD++ D +VS E++ I K + + + + F+ +D G +
Sbjct: 66 KGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLE 125
Query: 335 DIMLLQQS 342
+ ++
Sbjct: 126 EFQNYCKN 133
Score = 28.0 bits (62), Expect = 3.3
Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 21/106 (19%)
Query: 244 GTICLAQFFLYLTELYTQSRQ-NSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIY-- 300
+ ++ + + W R + D+ D +V + EF Y
Sbjct: 75 DVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFL--FKGMDVSGDGIVDLEEFQNYCK 132
Query: 301 -------KLKEM---------GKINEEDISVLMERFRTLDADQSGN 330
+ + + L R T A +GN
Sbjct: 133 NFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYRLLTSPAADAGN 178
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 34.3 bits (79), Expect = 0.049
Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 7/99 (7%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSD----LEAADLDHDKLVSVAEFV 298
G + + E +S + D+D + +EF+
Sbjct: 345 DGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFI 404
Query: 299 IYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM 337
+ + + F+ D D SG ++T ++
Sbjct: 405 A---SAIDRTILLSRERMERAFKMFDKDGSGKISTKELF 440
Score = 28.9 bits (65), Expect = 2.9
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 8/72 (11%)
Query: 269 KWVLTRQLTFSDLEAADLDHDKLVSVAEFVIY-KLKEMG-------KINEEDISVLMERF 320
W+ + + ++ +F KL + ++ L E F
Sbjct: 278 PWIQKYSSETPTISDLPSLESAMTNIRQFQAEKKLAQAALLYMASKLTTLDETKQLTEIF 337
Query: 321 RTLDADQSGNLT 332
R LD + G L
Sbjct: 338 RKLDTNNDGMLD 349
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 33.3 bits (76), Expect = 0.062
Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 282 EAADLDHDKLVSVAEFVIYKLK-EMGKINEEDISVLMERFRTLDADQSGNLTTADIMLL 339
E + +++ V + + + ++ + +S L +RF T D D G + +++
Sbjct: 3 ERLNEQNNESYRYLRSVGNQWQFNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYW 61
Score = 28.2 bits (63), Expect = 3.3
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 8/62 (12%)
Query: 282 EAADLDHDKLVSVAEFV------IYKLKEMGKINEEDISVLMER--FRTLDADQSGNLTT 333
++ + ++V +E + E + L+ + LD D G +
Sbjct: 88 LHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDV 147
Query: 334 AD 335
+
Sbjct: 148 DE 149
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.073
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 142 EKQQLLLVKA---MYNYENASAGSVSAAEVLKDVE 173
EKQ L ++A +Y ++A A ++ A +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT-----ME 47
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 33.6 bits (77), Expect = 0.074
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 301 KLKEMGK-INEEDISVLMERFRTLDADQSGNLTTADI 336
+L+ ++EED ++L + F + SG + D+
Sbjct: 108 RLRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDL 144
Score = 32.9 bits (75), Expect = 0.12
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
+ D +S + + L+ FR +D + +G L+ +
Sbjct: 164 FVMVENDTKGRMSYITL----VAVANDLAA-----LVADFRKIDTNSNGTLSRKEF 210
Score = 29.8 bits (67), Expect = 1.1
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
AD D V +E+V +G L + D D+SG L+ ++
Sbjct: 229 FRYADEDESDDVGFSEYV-----HLGLCLLV----LRILYAFADFDKSGQLSKEEV 275
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 31.2 bits (71), Expect = 0.11
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 303 KEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQS 342
+ + E+++ L F DA++SG L + L
Sbjct: 16 FQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTE 55
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 32.4 bits (74), Expect = 0.13
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 309 NEEDISVLMERFRTLDADQSGNLTTADIMLL 339
++ + L RFR LD ++ G L+ D+ +
Sbjct: 24 SQASLLRLHHRFRALDRNKKGYLSRMDLQQI 54
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 32.2 bits (74), Expect = 0.13
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
++AAD+D + EF+ + EE+ L+ F D D SG +T +I
Sbjct: 52 MDAADIDKSGTIDYGEFIAATVHLNKLEREEN---LVSAFSYFDKDGSGYITLDEI 104
Score = 28.7 bits (65), Expect = 2.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 307 KINEEDISVLMERFRTLDADQSGNLTT 333
+++EE+I L E F+ +D D SG +T
Sbjct: 3 RLSEEEIGGLKELFKMIDTDNSGTITF 29
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 32.0 bits (73), Expect = 0.14
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 273 TRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMER----FRTLDADQS 328
TRQ + L +SV E + + K+ E+ ++ + + + +D D+
Sbjct: 57 TRQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKD 116
Query: 329 GNLTTADI 336
G ++ +
Sbjct: 117 GYVSLPEF 124
Score = 30.9 bits (70), Expect = 0.37
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 309 NEEDISVLMERFRTLDADQSGNLTTADIMLLQQS 342
+ + R + +D G ++ D L+
Sbjct: 9 RAYHLRKMKTRMQRVDVTGDGFISREDYELIAVR 42
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 32.1 bits (74), Expect = 0.16
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 281 LEAADLDHDKLVSVAEFV---IYKLKEMGKINEEDISVLMERFRTLDADQSG 329
+ AD+D D V+ EFV K G +++ + + R +
Sbjct: 126 IREADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEV--IRNKIRAIGKMARV 175
Score = 29.0 bits (66), Expect = 1.7
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
+ D D + + EF+ ++M + E+ + E FR D D +G ++ A++
Sbjct: 53 INEVDADGNGTIDFPEFLTMMARKMKDTDSEE--EIREAFRVFDKDGNGYISAAEL 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.18
Identities = 41/255 (16%), Positives = 71/255 (27%), Gaps = 78/255 (30%)
Query: 120 VYVFSGMALVGLILGKAADYLVEK-----QQLLLVKAMYNYENASAGSVSAAEVLKDVET 174
V F V +L +L+ +Q ++ MY + + + +V
Sbjct: 79 VQKF-----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 175 HKVKYKLVTATFILLVLIIAGIVFL--------SVVEDLKFVDALYCVCSTITTLGYGDM 226
+ KL A LL L A V + + V AL VC
Sbjct: 134 LQPYLKLRQA---LLELRPAKNVLIDGVLGSGKTWV-------ALD-VCL---------- 172
Query: 227 SFSTRGGRFFAVFWILSGTICLAQFFL-YLTELYTQSRQN---------------SFVKW 270
S+ + F +FW+ + L L +L Q N ++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 271 VLTRQLTFSDLEAA--DLDH--DK------------LV-----SVAEFVIYKLKEMGKIN 309
L R L E L + + L+ V +F+ I+
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL--SAATTTHIS 290
Query: 310 EEDISVLMERFRTLD 324
+ S+ +
Sbjct: 291 LDHHSMTLTPDEVKS 305
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 31.7 bits (72), Expect = 0.20
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 301 KLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQ 341
KL N I F LD + +G ++ +++
Sbjct: 4 KLTSDF-DNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKAS 43
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 32.2 bits (73), Expect = 0.22
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 281 LEAADLDHDKLVSVAEFV-IYKLKEMGKINEEDISV----LMERFRTLDADQSGNLTTAD 335
L+ D ++D + + E + ++E + + I + + F D D +G + +
Sbjct: 153 LKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENE 212
Query: 336 I 336
+
Sbjct: 213 L 213
Score = 31.8 bits (72), Expect = 0.26
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 12/65 (18%)
Query: 281 LEAADLDHDKLVSVAEFV---------IYKLKEMGKINEEDISVLMERFRTLDADQSGNL 331
++ D + + E + + + E+ M+ +R D D SG +
Sbjct: 64 VDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEE---FMKTWRKYDTDHSGFI 120
Query: 332 TTADI 336
T ++
Sbjct: 121 ETEEL 125
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 31.7 bits (72), Expect = 0.23
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKL 302
SG L +F L + N + V D + D V EF+ +
Sbjct: 34 SGLQTLHEFKTLLGLQGLNQKANKHIDQVY---------NTFDTNKDGFVDFLEFIAA-V 83
Query: 303 KEMGKINEEDISVLMERFRTLDADQSGNLT 332
+ + E L F+ DAD +G++
Sbjct: 84 NLIMQEKMEQ--KLKWYFKLYDADGNGSID 111
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 31.6 bits (72), Expect = 0.39
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 15/99 (15%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFV---- 298
G + + ++L + + + + L AAD D + + +EFV
Sbjct: 360 DGQLDRQELIDGYSKLSGE--EVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAM 417
Query: 299 -IYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
L L F+ D D +G ++ ++
Sbjct: 418 DRKSL--------LSKDKLESAFQKFDQDGNGKISVDEL 448
Score = 30.8 bits (70), Expect = 0.60
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 308 INEEDISVLMERFRTLDADQSGNLTTADI 336
++E+ L + FR +D + G L ++
Sbjct: 340 TSQEETKELTDIFRHIDKNGDGQLDRQEL 368
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 30.9 bits (70), Expect = 0.43
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 302 LKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLL 339
+K+ + I+ L RF +LD ++G L+ D +
Sbjct: 17 IKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRI 54
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 31.2 bits (71), Expect = 0.44
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 308 INEEDISVLMERFRTLDADQSGNLTTADIM 337
++++ L F +D + G L A+++
Sbjct: 329 TSQDETKELTAIFHKMDKNGDGQLDRAELI 358
Score = 31.2 bits (71), Expect = 0.58
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDL-EAADLDHDKLVSVAEFVIYK 301
G + A+ EL Q++ + + + +A D D + + +EFV
Sbjct: 349 DGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVT-- 406
Query: 302 LKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
M + L FR D+D SG +++ ++
Sbjct: 407 -VAMDRKTLLSRERLERAFRMFDSDNSGKISSTEL 440
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 29.0 bits (66), Expect = 0.45
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 307 KINEEDISVLMERFRTLDADQSGNLTTADI 336
+++EE+I L E F+ +D D SG +T ++
Sbjct: 16 RLSEEEIGGLKELFKMIDTDNSGTITFDEL 45
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 30.2 bits (69), Expect = 0.52
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 281 LEAADLDHDKLVSVAEFV---IYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
+E D D + EF+ + ++KE K E+ L FR D + G + ++
Sbjct: 62 IEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEE--LANCFRIFDKNADGFIDIEEL 118
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 30.5 bits (69), Expect = 0.58
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 9/56 (16%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
+ D D + +S EF+ + F +SG L +I
Sbjct: 93 MRIFDTDFNGHISFYEFMAM----YKFMEL-----AYNLFVMNARARSGTLEPHEI 139
Score = 29.7 bits (67), Expect = 1.1
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 308 INEEDISVLMERFRTLDADQSGNLT 332
I + + + + F +D D+SG L
Sbjct: 45 IPLDQYTRIYQWFMGVDRDRSGTLE 69
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 29.6 bits (67), Expect = 0.66
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTT 333
+ DLD D ++ EF + ++ ++ E+ + L + + NL++
Sbjct: 83 VREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALT--QELCNHNLSS 133
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 30.0 bits (67), Expect = 0.88
Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKL 302
+G + F L ++ + Q ++ ++ A D D + + +FV+ L
Sbjct: 106 TGLVDEDTFKLIYSQFFPQGDATTYAHFLF---------NAFDADGNGAIHFEDFVVG-L 155
Query: 303 KEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQS 342
+ + + L F D ++ G +T +++ + +S
Sbjct: 156 SILLRGTVHE--KLKWAFNLYDINKDGCITKEEMLAIMKS 193
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 29.8 bits (67), Expect = 0.99
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKL 302
SGT+ + +F + ++ +V+ + A D + D + E+V L
Sbjct: 37 SGTLFMHEFKRFF-KVPDNEEATQYVEAMF---------RAFDTNGDNTIDFLEYVAA-L 85
Query: 303 KEMGKINEEDISVLMERFRTLDADQSGNLTTADIM 337
+ + E L F+ D D++G + +++
Sbjct: 86 NLVLRGTLEH--KLKWTFKIYDKDRNGCIDRQELL 118
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 29.7 bits (67), Expect = 1.0
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKL 302
SG + L +F + N +V+ + E D + D + E+V
Sbjct: 29 SGQLTLYEFKQFFGLKNLSPSANKYVEQMF---------ETFDFNKDGYIDFMEYVAALS 79
Query: 303 KEMGKINEEDISVLMERFRTLDADQSGNLT 332
+ ++ + F+ D D +G +
Sbjct: 80 LVLKGKVDQKLRWY---FKLYDVDGNGCID 106
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 29.4 bits (66), Expect = 1.1
Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKL 302
SG + F + + +++ ++ A D V +FV L
Sbjct: 33 SGVVNEETFKQIYAQFFPHGDASTYAHYLF---------NAFDTTQTGSVKFEDFVTA-L 82
Query: 303 KEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQS 342
+ + + L F D ++ G + ++M + ++
Sbjct: 83 SILLRGTVHE--KLRWTFNLYDINKDGYINKEEMMDIVKA 120
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 29.0 bits (66), Expect = 1.1
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
AD + + EF+ + M + ED +L + FRT D + +G + A +
Sbjct: 48 FNEADATGNGKIQFPEFLSMMGRRMKQTTSED--ILRQAFRTFDPEGTGYIPKAAL 101
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 29.1 bits (66), Expect = 1.2
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 284 ADLDHDKLVSVAEFV-IY--KLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
+D + V F+ + K G+ ED +E FR D + +G + A++
Sbjct: 57 SDELKSRRVDFETFLPMLQAVAKNRGQGTYEDY---LEGFRVFDKEGNGKVMGAEL 109
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 28.6 bits (64), Expect = 1.2
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 307 KINEEDISVLMERFRTLDADQSGNLTTADIM-LLQQS 342
+I EE + +FR+L D S ++ + +S
Sbjct: 15 RITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKS 51
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 29.0 bits (66), Expect = 1.2
Identities = 8/63 (12%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 277 TFSDLEAADLDHDKLVSVAEFV-IY--KLKEMGKINEEDISVLMERFRTLDADQSGNLTT 333
T +++ + V + +F+ + + E+ ++ F+ D D +G +
Sbjct: 39 TLAEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEF---VKGFQVFDKDATGMIGV 95
Query: 334 ADI 336
++
Sbjct: 96 GEL 98
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 28.6 bits (64), Expect = 1.3
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 308 INEEDISVLMERFRTLDADQSGNLTTADIM-LLQQS 342
+ + + F + D SG+LT +L QS
Sbjct: 8 VPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQS 43
>1daq_A Endoglucanase SS, CELS; cellulose degradation, cellulosome,
calcium-binding, hydrolase; NMR {Clostridium
thermocellum} SCOP: a.139.1.1 PDB: 1dav_A
Length = 71
Score = 27.5 bits (62), Expect = 1.5
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 267 FVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINE 310
++VL R + + ADL+ D V+ + I K + +I+
Sbjct: 23 LKRYVL-RSGISINTDNADLNEDGRVNSTDLGILKRYILKEIDT 65
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 28.9 bits (65), Expect = 1.6
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 309 NEEDISVLMERFRTLDADQSGNLTTADIM 337
N I F LD + +G +T +I+
Sbjct: 15 NPRWIKRHKHMFDFLDINGNGKITLDEIV 43
Score = 27.0 bits (60), Expect = 7.5
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 280 DLEAADLDHDKLVSVAEFVIYKLKEMG----KINEEDISVLMER----FRTLDADQSGNL 331
+++ K ++ +F+ + K + +++ E F D D SG +
Sbjct: 71 FFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTI 130
Query: 332 TTADI 336
T +
Sbjct: 131 TLDEW 135
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 28.7 bits (65), Expect = 1.6
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 281 LEAADLDHDKLVSVAEFV---IYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
++ D D V EF+ + +K+ K E+ L + FR D + G + ++
Sbjct: 61 IDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEE--ELSDLFRMFDKNADGYIDLEEL 117
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 28.7 bits (65), Expect = 1.7
Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
++ D + L+ +F I +++ K + D + F+ D D +G ++ ++
Sbjct: 65 IDEYDSEGRHLMKYDDFYIVMGEKILKRDPLD--EIKRAFQLFDDDHTGKISIKNL 118
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 28.7 bits (65), Expect = 1.7
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISV--LMERFRTLDADQSGNLTTADI 336
++ D + + F I + +G+ + L E FR D + +G ++T +
Sbjct: 56 IDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVM 113
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 29.7 bits (67), Expect = 1.7
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 309 NEEDISVLMERFRTLDADQSGNLTTADIM 337
E+ L + F+ LD + G L +++
Sbjct: 350 TLEERKELTDIFKKLDKNGDGQLDKKELI 378
Score = 28.5 bits (64), Expect = 3.7
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 15/99 (15%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFV---- 298
G + + L + +K + + L+ D D + + +EF+
Sbjct: 369 DGQLDKKELIEGYNVLRNFKNELGELK--NVEEEVDNILKEVDFDKNGYIEYSEFISVCM 426
Query: 299 -IYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
L L F D D+SG +T ++
Sbjct: 427 DKQIL--------FSEERLRRAFNLFDTDKSGKITKEEL 457
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 28.7 bits (65), Expect = 2.0
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
+ D D + EF+ +MG+ + + +++ FR D D SG +T D+
Sbjct: 70 ISEIDKDGSGTIDFEEFLTMMTAKMGERDSRE--EILKAFRLFDDDNSGTITIKDL 123
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 28.2 bits (64), Expect = 2.1
Identities = 7/56 (12%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
+ D + ++ +F+ ++M + + ++ +++ F+ D D++G ++ ++
Sbjct: 48 ISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEE--ILKAFKLFDDDETGKISFKNL 101
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 27.2 bits (61), Expect = 2.1
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 307 KINEEDISVLMERFRTLDADQSGNLTTAD 335
+ +DI+ F+ D + G +++++
Sbjct: 4 EDTPQDIADRERIFKRFDTNGDGKISSSE 32
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 27.4 bits (61), Expect = 2.3
Identities = 5/36 (13%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 308 INEEDISVLMERFRTLDADQSGNLTTADIM-LLQQS 342
++ + + E F D D G ++ ++ + ++
Sbjct: 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT 39
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 27.4 bits (61), Expect = 2.7
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 302 LKEMGKINEEDISVLMERFRTLDADQSGNLTTAD 335
L + K + + F D ++ ++ +
Sbjct: 12 LARLHKAVTSHYHAITQEFENFDTMKTNTISREE 45
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 27.9 bits (63), Expect = 3.0
Identities = 7/55 (12%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 285 DLDHDKLVSVAEFV-IY--KLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
L +++ + + KE+ + ++ F+ D + +G ++ D+
Sbjct: 51 SLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDL 105
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 27.0 bits (60), Expect = 3.5
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 307 KINEEDISVLMERFRTLDADQSGNLTTADIM-LLQQS 342
KI +E + +F+T+ D +G + + +S
Sbjct: 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS 38
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 27.4 bits (62), Expect = 4.0
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
+ D+D + + +EF+ +++ + E L+E F+ D + G ++ A++
Sbjct: 53 MNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQE--LLEAFKVFDKNGDGLISAAEL 106
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 27.6 bits (61), Expect = 4.2
Identities = 3/41 (7%), Positives = 14/41 (34%)
Query: 296 EFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
+F+ + + ++ D + +G++ +
Sbjct: 30 QFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSL 70
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 27.2 bits (61), Expect = 4.4
Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 277 TFSDLEAADLDHDKLVSVAEFV-IYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTAD 335
+ D + + ++ +++ + K N E++ ++ F D + +G LT +
Sbjct: 49 SSIDEKKIKELYGDNLTYEQYLEYLSICVHDKDNVEEL---IKMFAHFDNNCTGYLTKSQ 105
Query: 336 I 336
+
Sbjct: 106 M 106
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 27.1 bits (61), Expect = 5.1
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISV--LMERFRTLDADQSGNLTTADI 336
+ +++ V +FV ++ + I V L + FR D + G ++T+++
Sbjct: 53 SQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSEL 110
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 27.1 bits (61), Expect = 5.2
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 281 LEAADLDHDKLVSVAEFV---IYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
+ D D + + EF+ K+KE +EE++ +E F+ D D +G ++ A++
Sbjct: 52 INEVDADGNGTIDFPEFLSLMARKMKEQD--SEEEL---IEAFKVFDRDGNGLISAAEL 105
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 27.9 bits (62), Expect = 5.3
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 284 ADLDHDKLVSVAEFVIY---KLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
D D + + EF+ K+K+ +EE+I E FR D D +G ++ A++
Sbjct: 357 VDADGNGTIDFPEFLTMMARKMKDTD--SEEEI---REAFRVFDKDGNGYISAAEL 407
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 26.4 bits (58), Expect = 5.5
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 281 LEAADLDHDKLVSVAEFV 298
++ D + D+LV++ EF+
Sbjct: 78 MKNVDTNQDRLVTLEEFL 95
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 26.4 bits (59), Expect = 5.6
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 269 KWVLTR---QLTFSDLEA----ADLDHDKLVSVAEFV---IYKLKEMGKINEEDISVLME 318
+ V+ +LT ++E ADLD D V+ EFV + G L
Sbjct: 32 RHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVRGGGGGNGWSR---LRR 88
Query: 319 RFRT 322
+F +
Sbjct: 89 KFSS 92
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 27.3 bits (61), Expect = 5.8
Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 284 ADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLT 332
D + ++V + + + F D +++G +T
Sbjct: 138 FDRQRRGSLGFDDYV----ELSIFVCR-----VRNVFAFYDRERTGQVT 177
Score = 27.3 bits (61), Expect = 5.9
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
Query: 281 LEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
L D +H ++ EF I + E FR D+ G L + ++
Sbjct: 69 LHMYDKNHSGEITFDEFK----DLHHFILS-----MREGFRKRDSSGDGRLDSNEV 115
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Length = 98
Score = 26.3 bits (58), Expect = 6.2
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 165 AAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVED 204
A V +KV + ++V II + LSVV+
Sbjct: 56 AGIVCTLNSENKVDLT--NPQYTVVVEIIKAVCCLSVVKS 93
>2ccl_B Endo-1,4-beta-xylanase Y; cell adhesion, cohesin/dockerin complex,
cellulosome, cohesi dockerin, scaffolding, cellulose
degradation; 2.03A {Clostridium thermocellum} SCOP:
a.139.1.1 PDB: 1ohz_B
Length = 63
Score = 25.6 bits (57), Expect = 6.3
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 267 FVKWVL-TRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKI 308
+ VL LT AD+D + ++ A+ ++ + I
Sbjct: 21 LKRSVLRAITLTDDAKARADVDKNGSINAADVLLLSRYLLRVI 63
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 26.7 bits (60), Expect = 6.7
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 284 ADLDHDKLVSVAEFV-IY--KLKEMGKINEEDISVLMERFRTLDADQSGNLTTADI 336
+ + ++ EF+ + + ED +E R D + +G + A++
Sbjct: 55 KEEMNAAAITFEEFLPMLQAAANNKDQGTFEDF---VEGLRVFDKEGNGTVMGAEL 107
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 26.8 bits (60), Expect = 7.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 311 EDISVLMERFRTLDADQSGNLTT 333
D S L F+ +D D+SG ++
Sbjct: 4 PDQSFLWNVFQRVDKDRSGVISD 26
>4fl4_A Glycoside hydrolase family 9; structural genomics,
montreal-kingston bacterial structural initiative, BSGI,
dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Length = 88
Score = 25.7 bits (57), Expect = 8.1
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 267 FVKWVL---TRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINE 310
++VL + + + AD++ D V+ ++ I + I +
Sbjct: 39 LKRYVLKAVSTLPSSKAEKNADVNRDGRVNSSDVTILSRYLIRVIEK 85
Score = 25.7 bits (57), Expect = 8.7
Identities = 9/57 (15%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 285 DLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIMLLQQ 341
D++ D V+ + + K + ++ S + + D ++ G + ++D+ +L +
Sbjct: 24 DVNDDGKVNSTDLTLLKRYVLKAVSTLPSS---KAEKNADVNRDGRVNSSDVTILSR 77
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 26.1 bits (58), Expect = 8.5
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 272 LTRQLTFSDLEAA--DLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSG 329
+ L +D+ AA + + F K+ K ++ + + F +D D+SG
Sbjct: 3 FSGILADADVAAALKACEAADSFNYKAFFA-KVGLTAKSADD----IKKAFFVIDQDKSG 57
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 25.7 bits (57), Expect = 9.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 304 EMGKINEEDISVLMERFRTLDADQSGNLT 332
+ +++ S + + FR +D DQSG L
Sbjct: 31 QTSGLSKMSASQVKDIFRFIDNDQSGYLD 59
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 25.7 bits (57), Expect = 9.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 301 KLKEMGKINEEDISVLMERFRTLDADQSGNLT 332
K ++ ++++ S L E FR LD DQSG +
Sbjct: 28 KFFQISGMSKKSSSQLKEIFRILDNDQSGFIE 59
>2vn6_B Endoglucanase A; cell adhesion, carbohydrate metabolism,
polysaccharide degradation, hydrolase, glycosidase,
cellulose degradation; 1.49A {Clostridium
cellulolyticum} PDB: 2vn5_B
Length = 64
Score = 24.8 bits (55), Expect = 10.0
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 279 SDLEAADLDHDKLVSVAEFVIYKLKEMGKINE 310
+ ++ D++ D V+ + I K +G +++
Sbjct: 31 AYVKNLDVNLDNEVNAFDLAILKKYLLGMVSK 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.389
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,965,286
Number of extensions: 297062
Number of successful extensions: 894
Number of sequences better than 10.0: 1
Number of HSP's gapped: 858
Number of HSP's successfully gapped: 175
Length of query: 343
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 249
Effective length of database: 4,077,219
Effective search space: 1015227531
Effective search space used: 1015227531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.1 bits)