RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 038674
(343 letters)
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 66.5 bits (162), Expect = 2e-14
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 45 SALMSQEEIRFRQVLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGY 104
SAL + +LLV L G+ L G + ++++ + T TTVGY
Sbjct: 1 SALHWRA---AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGY 57
Query: 105 GDLVPHSTLAKLLACVYVFSGMALVGLILGKAADYLVEKQQ 145
GDL P + + +A V + +G+ GL+ A + V ++Q
Sbjct: 58 GDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98
Score = 52.6 bits (126), Expect = 1e-09
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 181 LVTATFILLVLIIAGIVFLSVVED-------LKFVDALYCVCSTITTLGYGDMSFSTRGG 233
AT +L+++++AG + E + + AL+ T TT+GYGD+ T G
Sbjct: 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG 67
Query: 234 RFFAVFWILSGTICLAQFFLYLTELYTQSRQN 265
R AV +++G L + Q
Sbjct: 68 RCVAVVVMVAGITSFGLVTAALATWFVGREQE 99
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 64.7 bits (158), Expect = 4e-14
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 58 VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLL 117
+LLL++ + G F I + S+Y+ VT+ TVGYGD P + L
Sbjct: 5 ILLLVLAVIIYGTAGFHFIEGE-------SWTVSLYWTFVTIATVGYGDYSPSTPLGMYF 57
Query: 118 ACVYVFSGMALVGLILGKAADYL 140
+ G+ + + + ++L
Sbjct: 58 TVTLIVLGIGTFAVAVERLLEFL 80
Score = 61.3 bits (149), Expect = 7e-13
Identities = 25/73 (34%), Positives = 34/73 (46%)
Query: 186 FILLVLIIAGIVFLSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRFFAVFWILSGT 245
++L +II G +E + +LY TI T+GYGD S ST G +F V I+ G
Sbjct: 7 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGI 66
Query: 246 ICLAQFFLYLTEL 258
A L E
Sbjct: 67 GTFAVAVERLLEF 79
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 57.3 bits (138), Expect = 4e-11
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 52 EIRFRQVLLLLVGYLGVGALCFFLIR----HQIKGEKTNGVLDSIYFCIVTMTTVGYGDL 107
++ + L V F L+ I + G + + +F + T+ TVGYGD+
Sbjct: 22 KVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM 81
Query: 108 VPHSTLAKLLACVYVFSGMALVGLILG 134
P + A +A + +F GM+ + L G
Sbjct: 82 HPQTVYAHAIATLEIFVGMSGIALSTG 108
Score = 42.3 bits (99), Expect = 8e-06
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 181 LVTATFILLVLIIAGIVF-----LSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
+ A F++ + A + ++ FV A + T+ T+GYGDM T
Sbjct: 31 SLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHA 90
Query: 236 FAVFWILSGTICLA 249
A I G +A
Sbjct: 91 IATLEIFVGMSGIA 104
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 55.0 bits (132), Expect = 2e-10
Identities = 19/77 (24%), Positives = 33/77 (42%)
Query: 58 VLLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGYGDLVPHSTLAKLL 117
+ L + + AL + I+ + D+ +F + TM T+GYG L+P LA L
Sbjct: 31 ITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTL 90
Query: 118 ACVYVFSGMALVGLILG 134
+ GM + +
Sbjct: 91 VTLEALCGMLGLAVAAS 107
Score = 43.8 bits (103), Expect = 2e-06
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 181 LVTATFILLVLIIAGIVF-----LSVVEDLKFVDALYCVCSTITTLGYGDMSFSTRGGRF 235
L+T +++ + A + F DA + T+ T+GYG +
Sbjct: 30 LITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANT 89
Query: 236 FAVFWILSGTICLAQFFLYLTELYTQ 261
L G + LA + +T+
Sbjct: 90 LVTLEALCGMLGLAVAASLIYARFTR 115
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 57
Score = 40.6 bits (95), Expect = 8e-06
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 53 IRFRQV---LLLLVGYLGVGALCFFLIRHQIKGEKTNGVLDSIYFCIVTMTTVGY 104
+ +R +LLV L G+ L G + ++++ T TTVGY
Sbjct: 3 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY 57
>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
{Soybean (Glycine max) [TaxId: 3847]}
Length = 182
Score = 33.1 bits (74), Expect = 0.027
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 307 KINEEDISVLMERFRTLDADQSGNLTTADIM 337
+++EE+I L E F+ +D D SG +T ++
Sbjct: 3 RLSEEEIGGLKELFKMIDTDNSGTITFDELK 33
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 32.7 bits (73), Expect = 0.057
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 257 ELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINEEDISVL 316
E + R+ + +Q S L+ + D + K M ++EED ++L
Sbjct: 72 ERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRLRP-----SKPM--LSEEDTNIL 124
Query: 317 MERFRTLDADQSGNLTTADI 336
+ F + SG + D+
Sbjct: 125 RQLFLSSAVSGSGKFSFQDL 144
>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
{Soybean (Glycine max) [TaxId: 3847]}
Length = 87
Score = 30.3 bits (68), Expect = 0.079
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 307 KINEEDISVLMERFRTLDADQSGNLTTADIM 337
+++EE+I L E F+ +D D SG +T ++
Sbjct: 16 RLSEEEIGGLKELFKMIDTDNSGTITFDELK 46
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 165
Score = 30.8 bits (68), Expect = 0.13
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 300 YKLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM 337
Y L+ + ++I L +RF+ LD D SG+L+ + M
Sbjct: 2 YPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFM 39
>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa
(Obelia longissima), obelin [TaxId: 32570]}
Length = 189
Score = 30.4 bits (67), Expect = 0.24
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 309 NEEDISVLMERFRTLDADQSGNLTTADIM 337
N I F LD + +G +T +I+
Sbjct: 9 NPRWIKRHKHMFDFLDINGNGKITLDEIV 37
>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 181
Score = 29.7 bits (65), Expect = 0.33
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 9/49 (18%)
Query: 284 ADLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLT 332
D ++ +F+ + + L + FR D DQ G +
Sbjct: 131 FDRQGRGQIAFDDFIQGCIV---------LQRLTDIFRRYDTDQDGWIQ 170
Score = 27.4 bits (59), Expect = 1.8
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 310 EEDISVLMERFRTLDADQSGNLTTADIM 337
D S L F+ +D D+SG ++ ++
Sbjct: 15 LPDQSFLWNVFQRVDKDRSGVISDNELQ 42
>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia)
[TaxId: 5888]}
Length = 146
Score = 28.7 bits (63), Expect = 0.56
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 307 KINEEDISVLMERFRTLDADQSGNLTTADIM 337
++ EE I+ E F D D G +TT ++
Sbjct: 2 QLTEEQIAEFKEAFALFDKDGDGTITTKELG 32
>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein
{Jellyfish (Aequorea aequorea), aequorin [TaxId:
168712]}
Length = 187
Score = 29.2 bits (64), Expect = 0.58
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 309 NEEDISVLMERFRTLDADQSGNLTTADIM 337
N I F LD + +G ++ +++
Sbjct: 7 NPRWIGRHKHMFNFLDVNHNGKISLDEMV 35
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 146
Score = 28.7 bits (63), Expect = 0.66
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 308 INEEDISVLMERFRTLDADQSGNLTTADIM 337
+ EE I+ E F D D +G+++++++
Sbjct: 4 LTEEQIAEFKEAFALFDKDNNGSISSSELA 33
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 77
Score = 27.3 bits (60), Expect = 0.67
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 308 INEEDISVLMERFRTLDADQSGNLTTADIMLLQQS 342
+ EE I+ E F D D +G+++++++ + +S
Sbjct: 4 LTEEQIAEFKEAFALFDKDNNGSISSSELATVMRS 38
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 28.6 bits (63), Expect = 0.69
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 12/95 (12%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKL 302
SG + A F + + F +V D + D + +EF+
Sbjct: 37 SGQLDAAGFQKIYKQFFPFGDPTKFATFVFN---------VFDENKDGRIEFSEFIQALS 87
Query: 303 KEMGKINEEDISVLMERFRTLDADQSGNLTTADIM 337
+E + F+ D D G +T +++
Sbjct: 88 VTSRGTLDEKL---RWAFKLYDLDNDGYITRNEML 119
>gi|148225444|ref|NP_001084009.1|(23-166:170) myosin light chain,
phosphorylatable, fast skeletal muscle [Xenopus laevis]
gi|27371289|gb|AAH41503.1| Mylpf-prov protein [Xenopus
laevis] gi|32450381|gb|AAH53808.1| Mylpf-prov protein
[Xenopus laevis] gi|45361043|ref|NP_989158.1| myosin,
light polypeptide 2, regulatory, cardiac, slow [Xenopus
(Silurana) tropicalis] gi|38494267|gb|AAH61602.1| Fast
skeletal myosin light chain 2 [Xenopus tropicalis]
gi|68342098|gb|AAY90073.1| MLC2 [Xenopus tropicalis]
gi|89272443|emb|CAJ83266.1| fast skeletal myosin light
chain 2 [Xenopus tropicalis] E=1e-68 s/c=1.81 id=86%
cov=100%
Length = 144
Score = 28.4 bits (62), Expect = 0.71
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 309 NEEDISVLMERFRTLDADQSGNLTTADIM 337
++ I E F +D ++ G + D+
Sbjct: 2 DQTQIQEFKEAFTVIDQNRDGIIDKEDLR 30
>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 162
Score = 28.4 bits (62), Expect = 0.85
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 308 INEEDISVLMERFRTLDADQSGNLTTADIM 337
++EE I+ F DAD G+++T ++
Sbjct: 14 LSEEMIAEFKAAFDMFDADGGGDISTKELG 43
>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 81
Score = 26.9 bits (59), Expect = 0.95
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 308 INEEDISVLMERFRTLDADQSGNLTTADIMLLQQS 342
++EE I+ F DAD G+++T ++ + +
Sbjct: 8 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRM 42
>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein
{Sandworm (Nereis diversicolor) [TaxId: 126592]}
Length = 174
Score = 28.1 bits (61), Expect = 1.1
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 309 NEEDISVLMERFRTLDADQSGNLTTADIMLL 339
++ + + F +D D+ G +T D +
Sbjct: 1 SDLWVQKMKTYFNRIDFDKDGAITRMDFESM 31
>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium
album) [TaxId: 3559]}
Length = 81
Score = 26.8 bits (59), Expect = 1.2
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 310 EEDISVLMERFRTLDADQSGNLTTADIM 337
+DI+ F+ D + G ++++++
Sbjct: 2 PQDIADRERIFKRFDTNGDGKISSSELG 29
>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein
{Leishmania major [TaxId: 5664]}
Length = 182
Score = 27.7 bits (60), Expect = 1.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 311 EDISVLMERFRTLDADQSGNLTTADIM 337
D LME FR +D D SG ++ ++
Sbjct: 15 NDNQELMEWFRAVDTDGSGAISVPELN 41
Score = 25.8 bits (55), Expect = 7.7
Identities = 5/46 (10%), Positives = 15/46 (32%), Gaps = 9/46 (19%)
Query: 287 DHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDADQSGNLT 332
+ ++V + + + F D +++G +T
Sbjct: 132 QRRGSLGFDDYVELSIF---------VCRVRNVFAFYDRERTGQVT 168
>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop
(Aequipecten irradians) [TaxId: 31199]}
Length = 142
Score = 27.7 bits (60), Expect = 1.4
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 308 INEEDISVLMERFRTLDADQSGNLTTADIMLLQQS 342
+ ++ I + E F +D D+ G ++ DI + +
Sbjct: 1 LPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQ 35
>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId:
10116]}
Length = 73
Score = 26.1 bits (57), Expect = 1.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 308 INEEDISVLMERFRTLDADQSGNLTTADIMLLQQS 342
+ EE I+ E F D D G +TT ++ + +S
Sbjct: 2 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS 36
>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 141
Score = 26.8 bits (58), Expect = 2.2
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 310 EEDISVLMERFRTLDADQSGNLTTADIM 337
EE + E F DAD +G + ++
Sbjct: 2 EEQKQEIREAFDLFDADGTGTIDVKELK 29
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 25.9 bits (56), Expect = 2.2
Identities = 4/36 (11%), Positives = 12/36 (33%)
Query: 302 LKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM 337
L + K + + F D ++ ++ +
Sbjct: 8 LARLHKAVTSHYHAITQEFENFDTMKTNTISREEFR 43
>d2dira1 d.308.1.3 (A:8-92) THUMP domain-containing protein 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 25.9 bits (57), Expect = 2.3
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 165 AAEVLKDVETHKVKYKLVTATFILLVLIIAGIVFLSVVE 203
A V +KV + ++V II + LSVV+
Sbjct: 49 AGIVCTLNSENKVDLT--NPQYTVVVEIIKAVCCLSVVK 85
>d1dava_ a.139.1.1 (A:) Cellulosome endoglucanase SS {Clostridium
thermocellum [TaxId: 1515]}
Length = 71
Score = 25.4 bits (56), Expect = 2.8
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 277 TFSDLEAADLDHDKLVSVAEFVIYKLKEMGKINE 310
+ + ADL+ D V+ + I K + +I+
Sbjct: 32 ISINTDNADLNEDGRVNSTDLGILKRYILKEIDT 65
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus
influenzae [TaxId: 727]}
Length = 78
Score = 25.0 bits (55), Expect = 3.9
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 270 WVLTRQLTFSDLEAA---DLDHDKLVSVAEFVIYKLKEMGKINEEDISVLMERFRTLDAD 326
++ DL +LD + + ++ L+E+ + L+
Sbjct: 8 MIIDGSANLRDLNKMFNWELDTEDARTFNGLILEHLEEIPDEGTI-CEIDGLLITILEVG 66
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh
{Thermus aquaticus [TaxId: 271]}
Length = 88
Score = 25.4 bits (56), Expect = 3.9
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 298 VIYKLKEMGKINEEDISVLMERFRT--LDAD 326
I +L+ G+I EED+ + R +DAD
Sbjct: 12 AIGRLRGRGRITEEDLKATLREIRRALMDAD 42
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 176
Score = 26.1 bits (56), Expect = 5.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 316 LMERFRTLDADQSGNLTTADIM 337
L +RF D D +G L AD
Sbjct: 9 LKKRFDRWDFDGNGALERADFE 30
>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB
{Human (Homo sapiens) [TaxId: 9606]}
Length = 180
Score = 25.9 bits (56), Expect = 5.4
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFV 298
GT+ + L + + +QL + LE +D+D D ++++EF
Sbjct: 109 DGTLNREDLSRLVNCLTGEGEDTRLSASEM-KQLIDNILEESDIDRDGTINLSEFQ 163
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac
isoform [TaxId: 9031]}
Length = 81
Score = 24.9 bits (54), Expect = 5.5
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 301 KLKEMGKINEEDISVLMERFRTLDADQSGNLTTADIM 337
+K+ K E+ L + FR D + G + ++
Sbjct: 4 CMKDDSKGKTEE--ELSDLFRMFDKNADGYIDLEELK 38
>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 75
Score = 24.1 bits (52), Expect = 8.0
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 309 NEEDISVLMERFRTLDADQSGNLTTADIM 337
+EE+ L FR D + G + ++
Sbjct: 7 SEEE---LANCFRIFDKNADGFIDIEELG 32
>d2cclb1 a.139.1.1 (B:1-59) Endo-1,4-beta-xylanase Y {Clostridium
thermocellum [TaxId: 1515]}
Length = 59
Score = 23.8 bits (52), Expect = 8.1
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 275 QLTFSDLEAADLDHDKLVSVAEFVIYKLKEMGKI 308
LT AD+D + ++ A+ ++ + I
Sbjct: 26 TLTDDAKARADVDKNGSINAADVLLLSRYLLRVI 59
>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal
domain (domain IV) {Rat (Rattus norvegicus), mu-type
[TaxId: 10116]}
Length = 188
Score = 25.4 bits (55), Expect = 8.7
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 20/90 (22%)
Query: 243 SGTICLAQFFLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFVIYKL 302
SG++ + + + + L QL + A D + ++ FV
Sbjct: 107 SGSMSAYEMRMAIEAAG----------FKLPCQL-HQVIVARFADDELIIDFDNFV---- 151
Query: 303 KEMGKINEEDISVLMERFRTLDADQSGNLT 332
+ + ++ L + F+ LD + +G +
Sbjct: 152 RCLVRLEI-----LFKIFKQLDPENTGTIQ 176
>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 108
Score = 24.5 bits (53), Expect = 9.6
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 252 FLYLTELYTQSRQNSFVKWVLTRQLTFSDLEAADLDHDKLVSVAEFV 298
+L EL ++ LT T S ++AAD D D + EF
Sbjct: 57 YLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQ 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.389
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,154,756
Number of extensions: 50495
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 57
Length of query: 343
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,226,816
Effective search space: 315291712
Effective search space used: 315291712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)