BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038676
(307 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 138/306 (45%), Gaps = 20/306 (6%)
Query: 1 LPIIDFSKPNLKPGTPEWDSVKSHVRKALEDYGCFEALFNKVPEEILKAVFGALEELFDL 60
PII K N E + ++ A E++G FE + + +P E+ V + +
Sbjct: 4 FPIISLDKVN----GVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKK 59
Query: 61 PLRTKMRN-ISKKPFHGYVGQYPQVPLYESMGIDDANVKEKVESMTNIL-WPEGNKSFCK 118
+ + ++ K G + + + K ++NI P+ ++ + +
Sbjct: 60 CXEQRFKELVASKALEGVQAEVTDXDWESTFFL-------KHLPISNISEVPDLDEEYRE 112
Query: 119 TIQSFSEQVSELDQTIRRMILESLGLEK-YMDEHMNST---SYLLRVMKYKGPETTEKKL 174
+ F++++ +L + + ++ E+LGLEK Y+ + ++ +V Y +
Sbjct: 113 VXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIK 172
Query: 175 GLNAHTDKNIVTILYQN-QVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLY 233
GL AHTD + +L+Q+ +V GL+L K+G+WI+V P HS + +GD L TNG+
Sbjct: 173 GLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPXR-HSIVVNLGDQLEVITNGKYK 230
Query: 234 SPYHRVMMTGIETRYSTGFFSIPKAGYKIEAPEELVDEEHPLLFKPFDHFEFLEFYYTEA 293
S HRV+ R S F P + I LV++E + + F F ++ A
Sbjct: 231 SVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYA 290
Query: 294 GQRAES 299
G + ++
Sbjct: 291 GLKFQA 296
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 120/271 (44%), Gaps = 25/271 (9%)
Query: 25 VRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTKMRNISKKPFHGYVGQYPQV 84
++KA D+G + + +P ++++ V A EE F L + K + + + G
Sbjct: 70 LKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG----- 124
Query: 85 PLYESMGIDDANVKEKVES-MTNILWPEGNKSFC---KTIQSFSEQVSELDQTIRRMILE 140
Y S ++A+ + + E ++ +PE + KT + E SE + +R + +
Sbjct: 125 --YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATK 182
Query: 141 -------SLGLE-KYMDEHMNSTSYLLRVMK---YKGPETTEKKLGLNAHTDKNIVTILY 189
LGLE +++ + LL MK Y E LG+ AHTD + +T +
Sbjct: 183 VFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL 242
Query: 190 QNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYS 249
N V GL+L G+W+ K P S + IGD+L +NG+ S HR ++ + R S
Sbjct: 243 HNMVPGLQL-FYEGKWVTAK-CVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
Query: 250 TGFFSIPKAGYKIEAP-EELVDEEHPLLFKP 279
F P + P E+V E P F P
Sbjct: 301 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPP 331
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 120/271 (44%), Gaps = 25/271 (9%)
Query: 25 VRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTKMRNISKKPFHGYVGQYPQV 84
++KA D+G + + +P ++++ V A EE F L + K + + + G
Sbjct: 69 LKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG----- 123
Query: 85 PLYESMGIDDANVKEKVES-MTNILWPEGNKSFC---KTIQSFSEQVSELDQTIRRMILE 140
Y S ++A+ + + E ++ +PE + KT + E SE + +R + +
Sbjct: 124 --YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATK 181
Query: 141 -------SLGLE-KYMDEHMNSTSYLLRVMK---YKGPETTEKKLGLNAHTDKNIVTILY 189
LGLE +++ + LL MK Y E LG+ AHTD + +T +
Sbjct: 182 VFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL 241
Query: 190 QNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYS 249
N V GL+L G+W+ K P S + IGD+L +NG+ S HR ++ + R S
Sbjct: 242 HNMVPGLQL-FYEGKWVTAK-CVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 299
Query: 250 TGFFSIPKAGYKIEAP-EELVDEEHPLLFKP 279
F P + P E+V E P F P
Sbjct: 300 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPP 330
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 118/271 (43%), Gaps = 25/271 (9%)
Query: 25 VRKALEDYGCFEALFNKVPEEILKAVFGALEELFDLPLRTKMRNISKKPFHGYVGQYPQV 84
++KA D+G + + +P ++ + V A EE F L + K + + + G
Sbjct: 70 LKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQG----- 124
Query: 85 PLYESMGIDDANVKEKVES-MTNILWPEGNKSFC---KTIQSFSEQVSELDQTIRRMILE 140
Y S ++A+ + + E ++ +PE + KT + E SE + +R + +
Sbjct: 125 --YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATK 182
Query: 141 -------SLGLE-KYMDEHMNSTSYLL---RVMKYKGPETTEKKLGLNAHTDKNIVTILY 189
LGLE +++ + LL ++ Y E LG+ AHTD + +T +
Sbjct: 183 VFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFIL 242
Query: 190 QNQVEGLELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYS 249
N V GL+L G+W+ K P S + IGD+L +NG+ S HR ++ + R S
Sbjct: 243 HNXVPGLQL-FYEGKWVTAK-CVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
Query: 250 TGFFSIPKAGYKIEAP-EELVDEEHPLLFKP 279
F P + P E V E P F P
Sbjct: 301 WAVFCEPPKDKIVLKPLPEXVSVESPAKFPP 331
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 99/247 (40%), Gaps = 24/247 (9%)
Query: 47 LKAVFGALEELFDLPLRTKMRNISKKPFHGYVGQYPQVPLYESMGIDDANVKE------- 99
+ A + + F LP+ TK + K G Y + + G D ++KE
Sbjct: 48 IDAAVDSAKAFFALPVETKKQYAGVK---GGARGYIPFGVETAKGADHYDLKEFWHXGRD 104
Query: 100 -------KVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLEK-YMDEH 151
+ N+ WP +F + + + I L LE+ +
Sbjct: 105 LPPGHRFRAHXADNV-WPAEIPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPT 163
Query: 152 MNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPS 211
+ + +LR++ Y + AH D N +T+L + GLE+ ++G+W+ + P
Sbjct: 164 VQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINP- 222
Query: 212 SPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIET----RYSTGFFSIPKAGYKIEAPEE 267
P + IGD L TN L S HRV+ E RYST FF + Y+I+ +
Sbjct: 223 PPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQN 282
Query: 268 LVDEEHP 274
V E+P
Sbjct: 283 CVTAENP 289
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 153 NSTSYLLRVMKYKGPETTEKKLGL---NAHTDKNIVTILYQNQVEGLELQTKNGEWINVK 209
NS LLR++ Y P T +++ G AH D N++T+L GL+++ K+G W++V
Sbjct: 146 NSHKTLLRILHYP-PXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDV- 203
Query: 210 PSSPHSFIAMIGDSLYAWTNGQLYSPYHRVM 240
PS + I IGD L ++G S HRV+
Sbjct: 204 PSDFGNIIINIGDXLQEASDGYFPSTSHRVI 234
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 29/223 (13%)
Query: 55 EELFDLPLRTKMRNISKKPFHGYVGQYPQVPLYESMGI-------DDANVKEKVESMTNI 107
EE +DL +R + + GY P ES D ++ K +
Sbjct: 68 EEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVN 127
Query: 108 LWPEGNKSFCKTIQSFSEQ----VSELDQTIRRMILESLGLEK-YMDEHMNSTSYLLRVM 162
+WP+ K Q F+EQ V L + + +LG E+ + H L V+
Sbjct: 128 VWPDETKH--PGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 163 KYKGP------------ETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKP 210
+ P KL H D +++T+LYQ+ V+ L+++T G + +++
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIE- 243
Query: 211 SSPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYSTGFF 253
+ ++ G + TN +P HRV E R S FF
Sbjct: 244 ADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFF 285
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 29/223 (13%)
Query: 55 EELFDLPLRTKMRNISKKPFHGYVGQYPQVPLYESMGI-------DDANVKEKVESMTNI 107
EE +DL +R + + GY P ES D ++ K +
Sbjct: 68 EEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVN 127
Query: 108 LWPEGNKSFCKTIQSFSEQ----VSELDQTIRRMILESLGLEK-YMDEHMNSTSYLLRVM 162
+WP+ K Q F+EQ V L + + +LG E+ + H L V+
Sbjct: 128 VWPDETKH--PGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 163 KYKGP------------ETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKP 210
+ P KL H D +++T+LYQ+ V+ L+++T G + +++
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIE- 243
Query: 211 SSPHSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIETRYSTGFF 253
+ ++ G + TN +P HRV E R S FF
Sbjct: 244 ADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFF 285
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 30/202 (14%)
Query: 78 VGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRM 137
G Y + SMG D L+P G+ T Q F Q + + + R
Sbjct: 91 TGSYSDYSMCYSMGTADN------------LFPSGDFERIWT-QYFDRQYTA-SRAVARE 136
Query: 138 ILESLG------LEKYMD-EHMNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQ 190
+L + G +E ++D E + Y +V +++ E E+ L + H D ++VT++ Q
Sbjct: 137 VLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAE--EQPLRMAPHYDLSMVTLIQQ 194
Query: 191 NQVEG--LELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVM-----MTG 243
+ LQ + G P P + + G T GQ+ +P H V
Sbjct: 195 TPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIA 254
Query: 244 IETRYSTGFFSIPKAGYKIEAP 265
+R S+ FF P A + P
Sbjct: 255 GSSRTSSVFFLRPNADFTFSVP 276
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 30/202 (14%)
Query: 78 VGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRM 137
G Y + SMG D L+P G+ T Q F Q + + + R
Sbjct: 91 TGSYSDYSMCYSMGTADN------------LFPSGDFERIWT-QYFDRQYTA-SRAVARE 136
Query: 138 ILESLG------LEKYMD-EHMNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQ 190
+L + G +E ++D E + Y +V +++ E E+ L + H D ++VT++ Q
Sbjct: 137 VLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAE--EQPLRMAPHYDLSMVTLIQQ 194
Query: 191 NQVEG--LELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVM-----MTG 243
+ LQ + G P P + + G T GQ+ +P H V
Sbjct: 195 TPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIA 254
Query: 244 IETRYSTGFFSIPKAGYKIEAP 265
+R S+ FF P A + P
Sbjct: 255 GSSRTSSVFFLRPNADFTFSVP 276
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 79/202 (39%), Gaps = 30/202 (14%)
Query: 78 VGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRM 137
G Y + SMG D L+P G+ F + + ++ + + R
Sbjct: 91 TGSYSDYSMCYSMGTADN------------LFPSGD--FERIWTQYFDRQYTASRAVARE 136
Query: 138 ILESLG------LEKYMD-EHMNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQ 190
+L + G +E ++D E + Y +V +++ E E+ L + H D ++VT++ Q
Sbjct: 137 VLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAE--EQPLRMAPHYDLSMVTLIQQ 194
Query: 191 NQVEG--LELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVM-----MTG 243
+ LQ + G P P + + G T GQ+ +P H V
Sbjct: 195 TPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIA 254
Query: 244 IETRYSTGFFSIPKAGYKIEAP 265
+R S+ FF P A + P
Sbjct: 255 GSSRTSSVFFLRPNADFTFSVP 276
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 79/202 (39%), Gaps = 30/202 (14%)
Query: 78 VGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRM 137
G Y + SMG D L+P G+ F + + ++ + + R
Sbjct: 111 TGSYSDYSMCYSMGTADN------------LFPSGD--FERIWTQYFDRQYTASRAVARE 156
Query: 138 ILESLG------LEKYMD-EHMNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQ 190
+L + G +E ++D E + Y +V +++ E E+ L + H D ++VT++ Q
Sbjct: 157 VLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAE--EQPLRMAPHYDLSMVTLIQQ 214
Query: 191 NQVEG--LELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVM-----MTG 243
+ LQ + G P P + + G T GQ+ +P H V
Sbjct: 215 TPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIA 274
Query: 244 IETRYSTGFFSIPKAGYKIEAP 265
+R S+ FF P A + P
Sbjct: 275 GSSRTSSVFFLRPNADFTFSVP 296
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 30/202 (14%)
Query: 78 VGQYPQVPLYESMGIDDANVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRM 137
G Y + SMG D L+P G+ F + + ++ + + R
Sbjct: 91 TGSYSDYSMCYSMGTADN------------LFPSGD--FERIWTQYFDRQYTASRAVARE 136
Query: 138 ILESLG------LEKYMD-EHMNSTSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQ 190
+L + G +E ++D E + Y +V +++ E E+ L + H D ++VT++ Q
Sbjct: 137 VLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAE--EQPLRMAPHYDLSMVTLIQQ 194
Query: 191 NQVEG--LELQTKNGEWINVKPSSPHSFIAMIGDSLYAWTNGQLYSPYHRVM-----MTG 243
+ LQ + G P P + + G T GQ+ +P H V
Sbjct: 195 TPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIA 254
Query: 244 IETRYSTGFFSIPKAGYKIEAP 265
++ S+ FF P A + P
Sbjct: 255 GSSQTSSVFFLRPNADFTFSVP 276
>pdb|1QSG|A Chain A, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|B Chain B, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|C Chain C, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|D Chain D, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|E Chain E, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|F Chain F, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|G Chain G, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|H Chain H, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
Length = 265
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 77 YVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEG 112
Y+G +P Y MG+ A+++ V M N + PEG
Sbjct: 149 YLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEG 184
>pdb|3PJD|A Chain A, Structure Of Enr G93a Mutant-Nad+-Triclosan Complex
pdb|3PJD|B Chain B, Structure Of Enr G93a Mutant-Nad+-Triclosan Complex
Length = 270
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 77 YVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEG 112
Y+G +P Y MG+ A+++ V M N + PEG
Sbjct: 146 YLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEG 181
>pdb|1DFG|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Benzo-Diazaborine
pdb|1DFG|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Benzo-Diazaborine
pdb|1DFH|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Thieno-Diazaborine
pdb|1DFH|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Thieno-Diazaborine
pdb|1DFI|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|C Chain C, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|D Chain D, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1QG6|A Chain A, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|B Chain B, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|C Chain C, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|D Chain D, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1D8A|A Chain A, E. Coli Enoyl ReductaseNAD+TRICLOSAN COMPLEX
pdb|1D8A|B Chain B, E. Coli Enoyl ReductaseNAD+TRICLOSAN COMPLEX
Length = 261
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 77 YVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEG 112
Y+G +P Y MG+ A+++ V M N + PEG
Sbjct: 145 YLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEG 180
>pdb|3PJE|A Chain A, Structure Of Enr G93s Mutant-Nad+-Triclosan Complex
pdb|3PJE|B Chain B, Structure Of Enr G93s Mutant-Nad+-Triclosan Complex
Length = 270
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 77 YVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEG 112
Y+G +P Y MG+ A+++ V M N + PEG
Sbjct: 146 YLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEG 181
>pdb|3PJF|A Chain A, Structure Of Enr G93v Mutant-Nad+-Triclosan Complex
pdb|3PJF|B Chain B, Structure Of Enr G93v Mutant-Nad+-Triclosan Complex
Length = 270
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 77 YVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEG 112
Y+G +P Y MG+ A+++ V M N + PEG
Sbjct: 146 YLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEG 181
>pdb|1C14|A Chain A, Crystal Structure Of E Coli Enoyl Reductase-nad+-triclosan
Complex
pdb|1C14|B Chain B, Crystal Structure Of E Coli Enoyl Reductase-nad+-triclosan
Complex
pdb|1I2Z|A Chain A, E. Coli Enoyl Reductase In Complex With Nad And Brl-12654
pdb|1I2Z|B Chain B, E. Coli Enoyl Reductase In Complex With Nad And Brl-12654
pdb|1I30|A Chain A, E. Coli Enoyl Reductase +nad+sb385826
pdb|1I30|B Chain B, E. Coli Enoyl Reductase +nad+sb385826
pdb|1LX6|A Chain A, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Benzamide Inhibitor
pdb|1LX6|B Chain B, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Benzamide Inhibitor
pdb|1LXC|A Chain A, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Acrylamide Inhibitor
pdb|1LXC|B Chain B, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Acrylamide Inhibitor
pdb|1MFP|A Chain A, E. Coli Enoyl Reductase In Complex With Nad And Sb611113
pdb|1MFP|B Chain B, E. Coli Enoyl Reductase In Complex With Nad And Sb611113
pdb|2FHS|A Chain A, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
Reductase From Escherichia Coli
pdb|2FHS|B Chain B, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
Reductase From Escherichia Coli
Length = 262
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 77 YVGQYPQVPLYESMGIDDANVKEKVESMTNILWPEG 112
Y+G +P Y MG+ A+++ V M N + PEG
Sbjct: 146 YLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEG 181
>pdb|1TOA|A Chain A, Periplasmic Zinc Binding Protein Troa From Treponema
Pallidum
pdb|1TOA|B Chain B, Periplasmic Zinc Binding Protein Troa From Treponema
Pallidum
Length = 313
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 60/146 (41%), Gaps = 18/146 (12%)
Query: 96 NVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLEKYMDEHMNST 155
+VK ES+ +L P + F + Q++ +Q+ +LD +RR + + ++
Sbjct: 149 SVKAVYESLCKLL-PGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAF 207
Query: 156 SYLLRVMKY--KGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPSSP 213
Y R + KG + +AH + + + Q ++ I ++ S P
Sbjct: 208 GYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPA----------IFIESSIP 257
Query: 214 HSFIAMIGDSLYA-----WTNGQLYS 234
H + + D++ A G+L+S
Sbjct: 258 HKNVEALRDAVQARGHVVQIGGELFS 283
>pdb|1K0F|A Chain A, Crystal Structure Of Zn(Ii)-Free T. Pallidum Troa
Length = 277
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 60/146 (41%), Gaps = 18/146 (12%)
Query: 96 NVKEKVESMTNILWPEGNKSFCKTIQSFSEQVSELDQTIRRMILESLGLEKYMDEHMNST 155
+VK ES+ +L P + F + Q++ +Q+ +LD +RR + + ++
Sbjct: 113 SVKAVYESLCKLL-PGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAF 171
Query: 156 SYLLRVMKY--KGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWINVKPSSP 213
Y R + KG + +AH + + + Q ++ I ++ S P
Sbjct: 172 GYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPA----------IFIESSIP 221
Query: 214 HSFIAMIGDSLYA-----WTNGQLYS 234
H + + D++ A G+L+S
Sbjct: 222 HKNVEALRDAVQARGHVVQIGGELFS 247
>pdb|1EW3|A Chain A, Crystal Structure Of The Major Horse Allergen Equ C 1
Length = 159
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 23/115 (20%)
Query: 193 VEGLELQTKNGEWINVKPSSP-------HSFIAMIGDSLYAWTNGQLYSPYHRVMMTGIE 245
+ ++ +GEW ++ +S + + + D + A N LY+ Y + G
Sbjct: 3 IRNFDISKISGEWYSIFLASDVKEKIEENGSMRVFVDVIRALDNSSLYAEYQ-TKVNGEC 61
Query: 246 TRY--------STGFFSIPKAGYKIEAPEELVDEEHPLLF-------KPFDHFEF 285
T + G +S+ GY + E ++EH +L+ +PF FEF
Sbjct: 62 TEFPMVFDKTEEDGVYSLNYDGYNVFRISEFENDEHIILYLVNFDKDRPFQLFEF 116
>pdb|2FJ0|A Chain A, Crystal Structure Of Juvenile Hormone Esterase From
Manduca Sexta, With Otfp Covalently Attached
Length = 551
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 149 DEHMN--STSYLLRVMKYKGPETTEKKLGLNAHTDKNIVTILYQNQVEGLELQTKNGEWI 206
D+HM TS++ MKY P T+ KL D + YQ ++ T + +
Sbjct: 475 DDHMKYWMTSFITNFMKYSNP-VTDAKLWPEVRADN----LRYQ------DIDTPD-VYQ 522
Query: 207 NVKPSSPHSFIAMIGDSLYAWTNGQLY 233
NVKP S + DS+Y W NG Y
Sbjct: 523 NVKPHSEQRDMLDFFDSIYNW-NGTSY 548
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,749,119
Number of Sequences: 62578
Number of extensions: 419333
Number of successful extensions: 1187
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1159
Number of HSP's gapped (non-prelim): 30
length of query: 307
length of database: 14,973,337
effective HSP length: 99
effective length of query: 208
effective length of database: 8,778,115
effective search space: 1825847920
effective search space used: 1825847920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)