Query 038679
Match_columns 101
No_of_seqs 133 out of 543
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 23:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_6 Ribosomal protein L36; 100.0 3.1E-53 1.1E-57 300.3 2.1 100 1-101 1-104 (104)
2 3r8s_4 50S ribosomal protein L 99.9 1.4E-26 4.8E-31 139.5 3.2 38 1-38 1-38 (38)
3 2zjr_4 50S ribosomal protein L 99.9 1.8E-25 6E-30 133.9 1.3 37 1-38 1-37 (37)
4 2ju4_A GMP-PDE gamma, retinal 26.6 18 0.00063 24.6 0.6 10 30-39 27-36 (87)
5 1cz6_A Protein (androctonin); 22.8 21 0.00073 19.4 0.3 22 10-31 3-24 (26)
6 1j0t_A MIH, MOLT-inhibiting ho 16.7 0.74 2.5E-05 30.5 -7.8 24 7-30 21-44 (78)
7 3ga3_A Interferon-induced heli 16.4 43 0.0015 23.8 0.8 30 5-36 9-46 (133)
8 2nnu_A Regulatory protein E2; 15.9 9.5 0.00033 29.1 -2.9 30 33-62 48-78 (205)
9 2jex_A Regulatory protein E2; 15.9 9.6 0.00033 29.1 -2.9 30 33-62 44-74 (209)
10 1tue_B Regulatory protein E2; 14.9 11 0.00036 29.1 -2.9 30 33-62 51-81 (218)
No 1
>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3.1e-53 Score=300.33 Aligned_cols=100 Identities=46% Similarity=0.751 Sum_probs=37.8
Q ss_pred CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC-CCCCCCCC--CCCc-cccccccccccccccccccccccccc
Q 038679 1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG-MSTFPNEG--LLTS-TFIETNVKQEIVPNHNFQVGLASLMP 76 (101)
Q Consensus 1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG-~~t~a~~~--~~~~-~~~e~~~~~~i~~~~~~~~g~as~~~ 76 (101)
||||+|||++|++|++|||+||||||||+||||||||| |+|+|+++ |+|+ .+.|++++++|.|+|+.++||||++|
T Consensus 1 MKVRaSlKk~C~~CkvVRRkGRvyVICK~NPRHKQRQG~~~T~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gla~~~~ 80 (104)
T 3bbo_6 1 MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGGFSSFAYEGITPSPLFAEPIASQELVRLPGQGVSAGLASLLH 80 (104)
T ss_dssp CBCCSCCCCCSTTBCCEEETTEEEBCBSSCGGGCBCCC------------------------------------------
T ss_pred CccchhhHHhhccCeEEEECCEEEEEcCCCcchhhhccceeeeeccCCCCCCccccccccccccccccccccccceeccc
Confidence 99999999999999999999999999999999999999 99999999 7777 55566669999999999999999999
Q ss_pred CCCCCceeccccccchhhhhcccCC
Q 038679 77 EKDETSSSIIYDGGPVLHLLFNQEN 101 (101)
Q Consensus 77 ~~~~~s~~~~w~~g~la~~l~~q~n 101 (101)
+||||||+||||+| ||||||+|||
T Consensus 81 ~~~~~s~~~~wr~g-las~l~~~~~ 104 (104)
T 3bbo_6 81 KRPMPTAYFGWRSG-LASILFKQGN 104 (104)
T ss_dssp -------------------------
T ss_pred cCcCcchhhCchhh-HHHHhhccCC
Confidence 99999999999999 9999999998
No 2
>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...
Probab=99.92 E-value=1.4e-26 Score=139.48 Aligned_cols=38 Identities=82% Similarity=1.216 Sum_probs=37.7
Q ss_pred CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC
Q 038679 1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38 (101)
Q Consensus 1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG 38 (101)
|||++|||++|++|++|||+|+|||||++|||||||||
T Consensus 1 MKVr~Svk~~c~~C~vvrR~grv~Vick~nPrhKqRQG 38 (38)
T 3r8s_4 1 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38 (38)
T ss_dssp CEECSCCCCCSTTEEEEEETTEEEEEETTCGGGCEECC
T ss_pred CccchhhhhhccCCeEEEECCEEEEEeCCCCchhhcCC
Confidence 99999999999999999999999999999999999998
No 3
>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4* 2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 3pio_4* 3pip_4* 1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6 1vou_6 1vow_6 ...
Probab=99.90 E-value=1.8e-25 Score=133.90 Aligned_cols=37 Identities=73% Similarity=1.220 Sum_probs=36.6
Q ss_pred CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC
Q 038679 1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38 (101)
Q Consensus 1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG 38 (101)
|||++|||++|++|++|||+|+|||||+ |||||||||
T Consensus 1 MKVr~slk~~c~~C~vvrR~grv~Vick-nPrhKqrQg 37 (37)
T 2zjr_4 1 MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQG 37 (37)
T ss_dssp CEECSSCCCCSTTCCCEECSSCEEECCS-SSTTCEECC
T ss_pred CccchhHHHhhcCCEEEEECCEEEEECC-CCcccccCC
Confidence 9999999999999999999999999999 999999998
No 4
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=26.58 E-value=18 Score=24.58 Aligned_cols=10 Identities=60% Similarity=0.637 Sum_probs=8.3
Q ss_pred CCCcccccCC
Q 038679 30 NPKHKQRQGM 39 (101)
Q Consensus 30 nPRHKQRQG~ 39 (101)
-||+||||-.
T Consensus 27 PPKFKQR~TR 36 (87)
T 2ju4_A 27 PPKCKQRQTR 36 (87)
T ss_dssp SCCCSSCSSS
T ss_pred CCccchhhcc
Confidence 4999999954
No 5
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=22.78 E-value=21 Score=19.43 Aligned_cols=22 Identities=36% Similarity=0.863 Sum_probs=16.5
Q ss_pred ccCCceEEEeCCEEEEEcCCCC
Q 038679 10 LCQFCKIVKRRGHIFVICSANP 31 (101)
Q Consensus 10 ~C~~C~vVRRkGRlyViCK~nP 31 (101)
.|+.=++-||+|--|--|...|
T Consensus 3 vcrqikicrrrggcyykctnrp 24 (26)
T 1cz6_A 3 VCRQIKICRRRGGCYYKCTNRP 24 (26)
T ss_dssp CCCEEEECCSSSCCEEEECCCC
T ss_pred HhhhhHHHHhcCceEEEccCCC
Confidence 4666677788998898897544
No 6
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=16.65 E-value=0.74 Score=30.48 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=19.6
Q ss_pred hhhccCCceEEEeCCEEEEEcCCC
Q 038679 7 VKKLCQFCKIVKRRGHIFVICSAN 30 (101)
Q Consensus 7 vKk~C~~C~vVRRkGRlyViCK~n 30 (101)
|-.+|+|||-+=|+-.|+..|++|
T Consensus 21 ldrVCdDCyNLyR~p~v~~~CR~n 44 (78)
T 1j0t_A 21 VVRVCEDCTNIFRLPGLDGMCRNR 44 (78)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTSS
T ss_pred HHHHHHHHHHHhcCccHHHHHHHh
Confidence 456799999988888888888754
No 7
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=16.45 E-value=43 Score=23.79 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=20.0
Q ss_pred chhhhccCCceEE--------EeCCEEEEEcCCCCCcccc
Q 038679 5 SSVKKLCQFCKIV--------KRRGHIFVICSANPKHKQR 36 (101)
Q Consensus 5 sSvKk~C~~C~vV--------RRkGRlyViCK~nPRHKQR 36 (101)
+.++.+|++|... .+.+-=||.+ ||-++.+
T Consensus 9 s~vkllCrkC~~~~C~g~DIR~ie~~HhVnv--~p~F~~~ 46 (133)
T 3ga3_A 9 SLITFLCKNCSVLACSGEDIHVIEKMHHVNM--TPEFKEL 46 (133)
T ss_dssp GGEEEEETTTCCEEEEGGGCEEETTTEEECC--CTGGGGS
T ss_pred ceEEEEccCCCeeEEeccceEEeccceEEee--Chhheee
Confidence 4578899999854 3455556665 5777655
No 8
>2nnu_A Regulatory protein E2; protein-peptide complex, helical peptide, three helix bundle, amphipathic helix, transcription; 1.59A {Human papillomavirus type 16} SCOP: b.91.1.1 PDB: 1dto_A
Probab=15.91 E-value=9.5 Score=29.08 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=21.5
Q ss_pred ccccc-CCCCCCCCCCCCccccccccccccc
Q 038679 33 HKQRQ-GMSTFPNEGLLTSTFIETNVKQEIV 62 (101)
Q Consensus 33 HKQRQ-G~~t~a~~~~~~~~~~e~~~~~~i~ 62 (101)
|++|| |+..++.+.-||-.-+|..|+|+|.
T Consensus 48 y~AR~~G~~~lG~q~VP~l~VSe~kAk~AIe 78 (205)
T 2nnu_A 48 YKAREMGFKHINHQVVPTLAVSKNKALQAIE 78 (205)
T ss_dssp HHHHHTTCSEETTEECCCHHHHHHHHHHHHH
T ss_pred HHHHHCCcCeeCCeECCcHHHhHHHHHHHHH
Confidence 34555 7878887766565778888898884
No 9
>2jex_A Regulatory protein E2; nuclear protein, DNA replication, phosphorylation, transcrip regulation, viral transcription factor; 2.35A {Bovine papillomavirus type 1} PDB: 2jeu_A
Probab=15.90 E-value=9.6 Score=29.15 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=21.5
Q ss_pred ccccc-CCCCCCCCCCCCccccccccccccc
Q 038679 33 HKQRQ-GMSTFPNEGLLTSTFIETNVKQEIV 62 (101)
Q Consensus 33 HKQRQ-G~~t~a~~~~~~~~~~e~~~~~~i~ 62 (101)
|++|| |+..++.+.-||-.-+|..|+|+|.
T Consensus 44 y~AR~~G~~~lG~q~VP~l~VSe~kAk~AIe 74 (209)
T 2jex_A 44 YAARKKGVTVLGHCRVPHSVVCQERAKQAIE 74 (209)
T ss_dssp HHHHHTTCSEETTEECCCHHHHHHHHHHHHH
T ss_pred HHHHHCCcCeeCCeECCcHHHhHHHHHHHHH
Confidence 34555 7878887766665778888898884
No 10
>1tue_B Regulatory protein E2; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: b.91.1.1
Probab=14.86 E-value=11 Score=29.10 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=21.6
Q ss_pred ccccc-CCCCCCCCCCCCccccccccccccc
Q 038679 33 HKQRQ-GMSTFPNEGLLTSTFIETNVKQEIV 62 (101)
Q Consensus 33 HKQRQ-G~~t~a~~~~~~~~~~e~~~~~~i~ 62 (101)
|++|| |+..++.+.-||-.-+|..|+|+|.
T Consensus 51 y~AR~~G~~~lG~q~VP~l~VSe~KAk~AIe 81 (218)
T 1tue_B 51 FAAREHGIQTLNHQVVPAYNISKSKAHKAIE 81 (218)
T ss_dssp HHHHHTTCSEETTEECCCHHHHHHHHHHHHH
T ss_pred HHHHHcCcCeeCCeECCcHHHhHHHHHHHHH
Confidence 34555 7888887766565778888898884
Done!