Query 038679
Match_columns 101
No_of_seqs 133 out of 543
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 23:41:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038679.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038679hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qam41 g.42.1.1 (4:1-38) Ribo 99.9 2.2E-27 1.6E-31 141.8 -0.8 38 1-38 1-38 (38)
2 d2zjr41 g.42.1.1 (4:1-37) Ribo 99.9 5.2E-26 3.8E-30 135.3 1.3 37 1-38 1-37 (37)
3 d1j0ta_ a.163.1.1 (A:) Mlt-inh 21.1 0.23 1.7E-05 31.6 -7.9 25 6-30 20-44 (78)
4 d2nnua1 b.91.1.1 (A:1-200) E2 15.1 4.8 0.00035 28.8 -2.9 30 33-62 44-74 (200)
5 d1r6na_ b.91.1.1 (A:) E2 regul 14.0 5.3 0.00039 28.6 -2.9 30 33-62 44-74 (196)
6 d2ja9a2 d.51.1.1 (A:152-236) R 13.1 57 0.0042 19.5 2.3 22 7-28 27-48 (85)
7 d3blza1 d.17.4.14 (A:3-126) Un 12.6 54 0.0039 19.0 2.0 14 16-29 105-118 (124)
8 d1tueb_ b.91.1.1 (B:) E2 regul 12.3 6.4 0.00047 28.1 -2.9 30 33-62 49-79 (194)
9 d1f39a_ b.87.1.1 (A:) lambda r 12.2 96 0.007 18.0 3.1 17 17-34 60-76 (101)
10 d2je8a4 b.18.1.5 (A:28-219) Be 11.1 33 0.0024 21.9 0.7 10 82-91 166-175 (192)
No 1
>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli [TaxId: 562]}
Probab=99.92 E-value=2.2e-27 Score=141.82 Aligned_cols=38 Identities=82% Similarity=1.216 Sum_probs=37.7
Q ss_pred CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC
Q 038679 1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38 (101)
Q Consensus 1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG 38 (101)
|||++|||++|++|++|||+|+|||||++|||||||||
T Consensus 1 MKVr~svKk~C~~C~ivrR~Grv~ViCk~nPrHKQRQG 38 (38)
T d2qam41 1 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38 (38)
T ss_dssp CCCCSCCCCCSTTBCCCCBTTBCCCCBSSCGGGCCCCC
T ss_pred CccchhhhhhCCCCeEEEecCEEEEEeCCCCcccccCC
Confidence 99999999999999999999999999999999999998
No 2
>d2zjr41 g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.91 E-value=5.2e-26 Score=135.30 Aligned_cols=37 Identities=70% Similarity=1.210 Sum_probs=36.2
Q ss_pred CcccchhhhccCCceEEEeCCEEEEEcCCCCCcccccC
Q 038679 1 MKVRSSVKKLCQFCKIVKRRGHIFVICSANPKHKQRQG 38 (101)
Q Consensus 1 MKVrsSvKk~C~~C~vVRRkGRlyViCK~nPRHKQRQG 38 (101)
||||+|||++|++|++|||+|+||||| +|||||||||
T Consensus 1 MKVr~SvKk~C~~C~virR~g~v~ViC-~npkHKQRQG 37 (37)
T d2zjr41 1 MKVRSSVKKMCDNCKVVRRHGRVLVIC-SNVKHKQRQG 37 (37)
T ss_dssp CEECSSCCCCSTTCCCEECSSCEEECC-SSSTTCEECC
T ss_pred CccchhhhhhccCceEEEeCCEEEEEe-CCCCccccCC
Confidence 999999999999999999999999999 5999999998
No 3
>d1j0ta_ a.163.1.1 (A:) Mlt-inhibiting hormone (MIH) {Kuruma prawn (Marsupenaeus japonicus) [TaxId: 27405]}
Probab=21.12 E-value=0.23 Score=31.63 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=20.4
Q ss_pred hhhhccCCceEEEeCCEEEEEcCCC
Q 038679 6 SVKKLCQFCKIVKRRGHIFVICSAN 30 (101)
Q Consensus 6 SvKk~C~~C~vVRRkGRlyViCK~n 30 (101)
.|-.+|+|||-+=|.-.|+..|++|
T Consensus 20 kldrVCeDCyNlfR~p~v~~~CR~n 44 (78)
T d1j0ta_ 20 KVVRVCEDCTNIFRLPGLDGMCRNR 44 (78)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHTSS
T ss_pred HHHHHhHHhHHHhcCchHHHHHHHh
Confidence 3556799999999998888888765
No 4
>d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain {Human papillomavirus type 16 [TaxId: 333760]}
Probab=15.14 E-value=4.8 Score=28.85 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=21.4
Q ss_pred ccccc-CCCCCCCCCCCCccccccccccccc
Q 038679 33 HKQRQ-GMSTFPNEGLLTSTFIETNVKQEIV 62 (101)
Q Consensus 33 HKQRQ-G~~t~a~~~~~~~~~~e~~~~~~i~ 62 (101)
|++|| |...++.+.-||-.-+|..|+|+|.
T Consensus 44 y~AR~~G~~~lG~q~VP~l~VSe~kAk~AIe 74 (200)
T d2nnua1 44 YKAREMGFKHINHQVVPTLAVSKNKALQAIE 74 (200)
T ss_dssp HHHHHTTCSEETTEECCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCeeCCEeCCchHHhHHHHHHHHH
Confidence 34555 7777887766665778888888884
No 5
>d1r6na_ b.91.1.1 (A:) E2 regulatory, transactivation domain {Human papillomavirus type 11 [TaxId: 10580]}
Probab=14.03 E-value=5.3 Score=28.57 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=21.3
Q ss_pred ccccc-CCCCCCCCCCCCccccccccccccc
Q 038679 33 HKQRQ-GMSTFPNEGLLTSTFIETNVKQEIV 62 (101)
Q Consensus 33 HKQRQ-G~~t~a~~~~~~~~~~e~~~~~~i~ 62 (101)
|++|+ |...++.+.-||-.-+|..|+|+|.
T Consensus 44 y~AR~~G~~~lG~q~VP~l~VSe~kAk~AIe 74 (196)
T d1r6na_ 44 HKAKQMGLSHIGLQVVPPLTVSETKGHNAIE 74 (196)
T ss_dssp HHHHHTTCCEETTEECCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCeeCCEeCCchHHhHHHHHHHHH
Confidence 34555 7777877766665778888888884
No 6
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=13.09 E-value=57 Score=19.50 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=16.5
Q ss_pred hhhccCCceEEEeCCEEEEEcC
Q 038679 7 VKKLCQFCKIVKRRGHIFVICS 28 (101)
Q Consensus 7 vKk~C~~C~vVRRkGRlyViCK 28 (101)
|++.++.=.+|-.+|||+|-|+
T Consensus 27 l~~~~~~eI~VG~NGrIWi~~~ 48 (85)
T d2ja9a2 27 LAAHTKFEVAIGLNGKIWVKCE 48 (85)
T ss_dssp HHTTCCCEEEEETTTEEEEECS
T ss_pred HHhhcCceEEEecCcEEEEECC
Confidence 5555655556779999999995
No 7
>d3blza1 d.17.4.14 (A:3-126) Uncharacterized protein Sbal0622 {Shewanella baltica [TaxId: 62322]}
Probab=12.61 E-value=54 Score=18.97 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=11.8
Q ss_pred EEEeCCEEEEEcCC
Q 038679 16 IVKRRGHIFVICSA 29 (101)
Q Consensus 16 vVRRkGRlyViCK~ 29 (101)
++|++|+|.|+.+.
T Consensus 105 lvK~dG~WkI~~r~ 118 (124)
T d3blza1 105 LLKVEGKWTVVSKI 118 (124)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEE
Confidence 67999999998763
No 8
>d1tueb_ b.91.1.1 (B:) E2 regulatory, transactivation domain {Human papillomavirus type 18 [TaxId: 333761]}
Probab=12.34 E-value=6.4 Score=28.06 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=20.9
Q ss_pred ccccc-CCCCCCCCCCCCccccccccccccc
Q 038679 33 HKQRQ-GMSTFPNEGLLTSTFIETNVKQEIV 62 (101)
Q Consensus 33 HKQRQ-G~~t~a~~~~~~~~~~e~~~~~~i~ 62 (101)
|++|| |...++.+.-||-.-+|..|+|+|.
T Consensus 49 y~AR~~G~~~lG~q~VP~l~VSe~kAk~AIe 79 (194)
T d1tueb_ 49 FAAREHGIQTLNHQVVPAYNISKSKAHKAIE 79 (194)
T ss_dssp HHHHHTTCSEETTEECCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCccCCEeCCchHHhHHHHHHHHH
Confidence 34555 6777777765555677888888884
No 9
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=12.15 E-value=96 Score=17.97 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=10.3
Q ss_pred EEeCCEEEEEcCCCCCcc
Q 038679 17 VKRRGHIFVICSANPKHK 34 (101)
Q Consensus 17 VRRkGRlyViCK~nPRHK 34 (101)
.+.+|+++.+. .||+|.
T Consensus 60 ~~~~~~~~L~s-~N~~y~ 76 (101)
T d1f39a_ 60 IRDSGQVFLQP-LNPQYP 76 (101)
T ss_dssp EEETTEEEEEC-SSTTSC
T ss_pred EEcCCEEEEEE-CCCCCC
Confidence 33477777666 477653
No 10
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=11.06 E-value=33 Score=21.89 Aligned_cols=10 Identities=30% Similarity=0.145 Sum_probs=8.1
Q ss_pred ceeccccccc
Q 038679 82 SSSIIYDGGP 91 (101)
Q Consensus 82 s~~~~w~~g~ 91 (101)
...|||+.||
T Consensus 166 ~~~~GWDwgp 175 (192)
T d2je8a4 166 PYSYGWDWGI 175 (192)
T ss_dssp GGGGCBTTBC
T ss_pred ccccCcccCc
Confidence 4579999986
Done!