BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038680
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FHI|A Chain A, Substrate Analog (Ib2) Complex With The Fragile Histidine
Triad Protein, Fhit
pdb|4FIT|A Chain A, Fhit-Apo
pdb|6FIT|A Chain A, Fhit-Transition State Analog
Length = 147
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 66/89 (74%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPH 101
HVLVC R +RF DL DE DL+ T Q+VG +E + G+S TF++QDGPEAGQTV H
Sbjct: 35 HVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKH 94
Query: 102 VHIHVLPRKAGDFEKNDEIYDAIEVKEKE 130
VH+HVLPRKAGDF +ND IY+ ++ +KE
Sbjct: 95 VHVHVLPRKAGDFHRNDSIYEELQKHDKE 123
>pdb|3FIT|A Chain A, Fhit (Fragile Histidine Triad Protein) In Complex With
AdenosineSULFATE AMP ANALOG
pdb|1FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|2FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|5FIT|A Chain A, Fhit-Substrate Analog
Length = 147
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 65/89 (73%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPH 101
HVLVC R +RF DL DE DL+ T Q+VG +E + G+S TF+ QDGPEAGQTV H
Sbjct: 35 HVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSXQDGPEAGQTVKH 94
Query: 102 VHIHVLPRKAGDFEKNDEIYDAIEVKEKE 130
VH+HVLPRKAGDF +ND IY+ ++ +KE
Sbjct: 95 VHVHVLPRKAGDFHRNDSIYEELQKHDKE 123
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 76/119 (63%), Gaps = 9/119 (7%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPH 101
HVLV +R R DLT ET DL++ A+KV LE +H +STT +QDG +AGQTVPH
Sbjct: 331 HVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPH 390
Query: 102 VHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160
VHIH+LPR+AGDF N EIY + +KE ERK RS E+M +EA YR+L
Sbjct: 391 VHIHILPRRAGDFGDN-EIYQKLASHDKE--------PERKPRSNEQMAEEAVVYRNLM 440
>pdb|2FHI|A Chain A, Substrate Analog (Ib2) Complex With The His 96 Asn
Substitution Of The Fragile Histidine Triad Protein,
Fhit
Length = 147
Score = 112 bits (281), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 66/89 (74%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPH 101
HVLVC R +RF DL DE DL+ T Q+VG +E + G+S TF++QDGPEAGQTV H
Sbjct: 35 HVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKH 94
Query: 102 VHIHVLPRKAGDFEKNDEIYDAIEVKEKE 130
V++HVLPRKAGDF +ND IY+ ++ +KE
Sbjct: 95 VNVHVLPRKAGDFHRNDSIYEELQKHDKE 123
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
pdb|3O0M|B Chain B, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
Length = 149
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 36 RCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQL-ESYHKGSSTTFAIQDGPE 94
R F H LV + D + + Q++ + ES AI DG
Sbjct: 35 RPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARESGLHADGNNIAINDGKA 94
Query: 95 AGQTVPHVHIHVLPRKAGD 113
A QTV H+H+HV+PR+ GD
Sbjct: 95 AFQTVFHIHLHVVPRRNGD 113
>pdb|3ANO|A Chain A, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
pdb|3ANO|B Chain B, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
Length = 218
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 18 RRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLE 77
R K A+L+ P++ H++V R DLT E+ +L QK + ++
Sbjct: 89 RGKLVYAVLNLYPYNPG-------HLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIK 141
Query: 78 SYHKGSSTTFAIQDGPEAGQTVP-HVHIHVLPRKAGD 113
+ + + G AG ++ H+H+HV+PR GD
Sbjct: 142 NVSRPHGFNVGLNLGTSAGGSLAEHLHVHVVPRWGGD 178
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPH 101
H LV + + ++T + +L+ K+ + L+ K + AGQTV H
Sbjct: 72 HTLVIPKEHVRNALEMTQTQAANLFARIPKIARALQKATKADGLNIINNNEETAGQTVFH 131
Query: 102 VHIHVLPRKA 111
H+H++PR A
Sbjct: 132 AHVHLVPRFA 141
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
Nucleotide-Binding Protein St2152 From Sulfolobus
Tokodaii Strain7
Length = 149
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/116 (18%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPH 101
H LV ++ + + + D +L + V ++ K G AGQ + H
Sbjct: 35 HTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFH 94
Query: 102 VHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYR 157
+H+H++P GD+ +I+ + + ++++ ++ +L ++ S+E + ++ Y+
Sbjct: 95 LHVHIIPTWEGDYP---DIFKSFKPRKEQEKEYYELLQKIIRESIENLKRKIGDYK 147
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
Length = 147
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPH 101
H LV + + LT + + ++ K+ +++ +G +AGQTV H
Sbjct: 45 HTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFH 104
Query: 102 VHIHVLPR 109
H+H++PR
Sbjct: 105 FHLHLIPR 112
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPH 101
H+LV + A +L ++ D+ + K + + +G A Q VPH
Sbjct: 47 HMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPH 106
Query: 102 VHIHVLPRKAGDFEKNDEI-YDAIEVKEKELQQ 133
VH H++P+ D + +I +D ++V EL +
Sbjct: 107 VHFHIIPKT--DEKTGLKIGWDTVKVASDELAE 137
>pdb|3P0T|A Chain A, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
pdb|3P0T|B Chain B, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
Length = 138
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPH 101
H LV R E + D+ + + +Q +GK + + + I AG VPH
Sbjct: 41 HTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGLII-----AGLEVPH 95
Query: 102 VHIHVLP-RKAGDF 114
+H+HV P R DF
Sbjct: 96 LHVHVFPTRSLSDF 109
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
Length = 161
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPH 101
H LV ++ ++ D + + QK+ K ++ + T + + QTV H
Sbjct: 64 HTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYH 123
Query: 102 VHIHVLPRKAG-DFEKNDEIYDAIEVKEKE 130
+H H++PR G + ++ I E+ E+
Sbjct: 124 LHFHIIPRMEGIELTPHNNIITPTEILEEN 153
>pdb|2OIK|A Chain A, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|B Chain B, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|C Chain C, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
pdb|2OIK|D Chain D, Crystal Structure Of A Histidine Triad (Hit) Protein
(Mfla_2506) From Methylobacillus Flagellatus Kt At 1.65
A Resolution
Length = 154
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 45 VCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHI 104
V R K +DL E L L V + + + A G PHVH
Sbjct: 45 VILNRHVKEXSDLRPAERDHLXLVVFAVEEAVREVXRPDKINLA-----SLGNXTPHVHW 99
Query: 105 HVLPRKAGDFEKNDEIYDAIEVKEKELQQKLD 136
HV+PR D + ++ E K + L Q LD
Sbjct: 100 HVIPRFKRDRHFPNSVWG--ETKRESLPQALD 129
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPH 101
H LV + + + T + + K+ + + + +G +AGQ+V H
Sbjct: 41 HTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFH 100
Query: 102 VHIHVLPR 109
H+H++PR
Sbjct: 101 YHMHIIPR 108
>pdb|3I4S|A Chain A, Crystal Structure Of Histidine Triad Protein Blr8122 From
Bradyrhizobium Japonicum
pdb|3I4S|B Chain B, Crystal Structure Of Histidine Triad Protein Blr8122 From
Bradyrhizobium Japonicum
Length = 149
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 43 VLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHV 102
+LV R +A DL + L +V + L+ K A G VP +
Sbjct: 41 LLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIA-----ALGNLVPQL 95
Query: 103 HIHVLPRKAGDFEKNDEIYDAIE 125
H+H++ R+ GD ++ ++
Sbjct: 96 HVHIIARRTGDAAWPRPVWGVMQ 118
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) Double Cysteine
Mutant From Rabbit
Length = 126
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 42 HVLVCSRREAKRFADLTADETTD------LWLTAQKVGKQLESYHKGSSTTFAIQDGPEA 95
H LV + K + ++A E D L + +K L KG + +G +
Sbjct: 51 HFLVIPK---KHISQISAAEDADESLLGHLMIVGKKAAADL-GLKKG--YRMVVNEGSDG 104
Query: 96 GQTVPHVHIHVL 107
GQ+V HVH+HVL
Sbjct: 105 GQSVYHVHLHVL 116
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 42 HVLVCSRREAKRFADLTADETTD------LWLTAQKVGKQLESYHKGSSTTFAIQDGPEA 95
H LV + K + ++A E D L + +K L KG + +G +
Sbjct: 51 HFLVIPK---KHISQISAAEDADESLLGHLMIVGKKAAADL-GLKKG--YRMVVNEGSDG 104
Query: 96 GQTVPHVHIHVL 107
GQ+V HVH+HVL
Sbjct: 105 GQSVYHVHLHVL 116
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
Length = 119
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 42 HVLVCSRREAKRFADLT---ADETTDLWLTAQKVGKQLESYHKG-SSTTFAIQD--GPEA 95
H+LV ++ D+ D + + + K+ K+ KG T F + + G +
Sbjct: 40 HILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKE-----KGFDQTGFRVINNCGSDG 94
Query: 96 GQTVPHVHIHVLPRK 110
GQ V H+H H+L K
Sbjct: 95 GQEVKHLHYHILAGK 109
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQE|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQG|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQG|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQH|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
pdb|4EQH|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
Length = 128
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLES---YHKGSSTTFAIQDGPEAGQT 98
H LV ++ + + + D+ L VGK+ + +KG + +G + GQ+
Sbjct: 53 HFLVIPKKHISQIS-VAEDDDESLLGHLMIVGKKCAADLGLNKG--YRMVVNEGSDGGQS 109
Query: 99 VPHVHIHVL 107
V HVH+HVL
Sbjct: 110 VYHVHLHVL 118
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
pdb|3TW2|B Chain B, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
Length = 126
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLES---YHKGSSTTFAIQDGPEAGQT 98
H LV ++ + + + D+ L VGK+ + +KG + +G + GQ+
Sbjct: 51 HFLVIPKKHISQIS-VAEDDDESLLGHLMIVGKKCAADLGLNKG--YRMVVNEGSDGGQS 107
Query: 99 VPHVHIHVL 107
V HVH+HVL
Sbjct: 108 VYHVHLHVL 116
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N-
Ethylsulfamoyladenosine
pdb|3QGZ|A Chain A, Re-Investigated High Resolution Crystal Structure Of
Histidine Triad Nucleotide-Binding Protein 1 (Hint1)
From Rabbit Complexed With Adenosine
Length = 126
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 42 HVLVCSRREAKRFADLTADETTD------LWLTAQKVGKQLESYHKGSSTTFAIQDGPEA 95
H LV + K + ++A E D L + +K L KG + +G +
Sbjct: 51 HFLVIPK---KHISQISAAEDADESLLGHLMIVGKKCAADL-GLKKG--YRMVVNEGSDG 104
Query: 96 GQTVPHVHIHVL 107
GQ+V HVH+HVL
Sbjct: 105 GQSVYHVHLHVL 116
>pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPF|A Chain A, Pkci-Substrate Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
Length = 126
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLES---YHKGSSTTFAIQDGPEAGQT 98
H LV ++ + + + D+ L VGK+ + +KG + +G + GQ+
Sbjct: 51 HFLVIPKKHISQIS-VAEDDDESLLGHLMIVGKKCAADLGLNKG--YRMVVNEGSDGGQS 107
Query: 99 VPHVHIHVL 107
V HVH+HVL
Sbjct: 108 VYHVHLHVL 116
>pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
Length = 125
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLES---YHKGSSTTFAIQDGPEAGQT 98
H LV ++ + + + D+ L VGK+ + +KG + +G + GQ+
Sbjct: 50 HFLVIPKKHISQIS-VAEDDDESLLGHLMIVGKKCAADLGLNKG--YRMVVNEGSDGGQS 106
Query: 99 VPHVHIHVL 107
V HVH+HVL
Sbjct: 107 VYHVHLHVL 115
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 42 HVLVCSRREAKRFADLTADETTD------LWLTAQKVGKQLESYHKGSSTTFAIQDGPEA 95
H LV + K + ++A E D L + +K L KG + +G +
Sbjct: 51 HFLVIPK---KHISQISAAEDADESLLGHLMIVGKKCAADL-GLKKG--YRMVVNEGSDG 104
Query: 96 GQTVPHVHIHVL 107
GQ+V HVH+HVL
Sbjct: 105 GQSVYHVHLHVL 116
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 42 HVLVCSRR---EAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQT 98
HVL+ + K + A D+ A KV + L KG G AGQT
Sbjct: 71 HVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGYR--LITNCGVAAGQT 128
Query: 99 VPHVHIHVL 107
V H+H H+L
Sbjct: 129 VFHLHYHLL 137
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 28.1 bits (61), Expect = 2.0, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 119 EIYDAIEVKEKELQQKLDLDKERKDRSLEEMN--QEADQ 155
+IYDAIE + ++ L LDKE + +E++ Q DQ
Sbjct: 28 DIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQ 66
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 42 HVLVCSRREAKRFADLTADETTDLWLTAQKV---GKQ--LESYHKGSSTTFAIQDGPEAG 96
H+LV ++ ++T + + KV GK+ E Y ++ G +AG
Sbjct: 43 HILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKECPEGYRVVNNI------GEDAG 96
Query: 97 QTVPHVHIHVLPRK 110
QTV H+H H+L K
Sbjct: 97 QTVKHIHFHILGGK 110
>pdb|1B4F|A Chain A, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|B Chain B, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|C Chain C, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|D Chain D, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|E Chain E, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|F Chain F, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|G Chain G, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1B4F|H Chain H, Oligomeric Structure Of The Human Ephb2 Receptor Sam
Domain
pdb|1F0M|A Chain A, Monomeric Structure Of The Human Ephb2 Sam (Sterile
Alpha Motif) Domain
Length = 82
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 56 DLTADETTDLWLTAQKVGKQLESYHKGSSTTFAI 89
D T+ T D WL A K+G+ ES+ T+F +
Sbjct: 7 DYTSFNTVDEWLEAIKMGQYKESFANAGFTSFDV 40
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With Gmp
pdb|4RHN|A Chain A, Histidine Triad Nucleotide-binding Protein (hint) From
Rabbit Complexed With Adenosine
pdb|5RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With 8-Br-Amp
pdb|6RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Without Nucleotide
Length = 115
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 42 HVLVCSRREAKRFADLTADETTD------LWLTAQKVGKQLESYHKGSSTTFAIQDGPEA 95
H LV + K + ++A E D L + +K L KG + +G +
Sbjct: 40 HFLVIPK---KHISQISAAEDADESLLGHLMIVGKKCAADL-GLKKG--YRMVVNEGSDG 93
Query: 96 GQTVPHVHIHVL 107
GQ+V HVH+HVL
Sbjct: 94 GQSVYHVHLHVL 105
>pdb|1SGG|A Chain A, The Solution Structure Of Sam Domain From The Receptor
Tyrosine Kinase Ephb2, Nmr, 10 Structures
Length = 75
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 56 DLTADETTDLWLTAQKVGKQLESYHKGSSTTFAI 89
D T+ T D WL A K+ + ES+ TTF I
Sbjct: 6 DYTSFNTVDEWLDAIKMSQYKESFASAGFTTFDI 39
>pdb|3UDF|A Chain A, Crystal Structure Of Apo Pbp1a From Acinetobacter
Baumannii
pdb|3UDF|B Chain B, Crystal Structure Of Apo Pbp1a From Acinetobacter
Baumannii
pdb|3UDI|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Penicillin G
pdb|3UDI|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Penicillin G
pdb|3UDX|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Imipenem
pdb|3UDX|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Imipenem
pdb|3UE0|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Aztreonam
pdb|3UE0|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Aztreonam
pdb|3UE1|A Chain A, Crystal Strucuture Of Acinetobacter Baumanni Pbp1a In
Complex With Mc- 1
pdb|3UE1|B Chain B, Crystal Strucuture Of Acinetobacter Baumanni Pbp1a In
Complex With Mc- 1
Length = 731
Score = 26.6 bits (57), Expect = 6.9, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 124 IEVKEKELQQKLDLDKERKDRSLEEMNQEADQYR 157
+EV KEL+QK +K K +L++ ++ QYR
Sbjct: 590 VEVTNKELEQK---EKTTKQLNLKQTDKNNSQYR 620
>pdb|2KXP|B Chain B, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 270
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 37 CFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAG 96
C+ HV+ + + R A T LWL K G + + G S T ++
Sbjct: 146 CWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSG--TMNLGGSLTRQMEKDETVS 203
Query: 97 QTVPHV 102
+ PH+
Sbjct: 204 DSSPHI 209
>pdb|1IZN|B Chain B, Crystal Structure Of Actin Filament Capping Protein Capz
pdb|1IZN|D Chain D, Crystal Structure Of Actin Filament Capping Protein Capz
pdb|3LK3|B Chain B, Crystal Structure Of Capz Bound To The Cpi And Csi
Uncapping Motifs From Carmil
pdb|3LK4|B Chain B, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|E Chain E, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|H Chain H, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|K Chain K, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|N Chain N, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|Q Chain Q, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|T Chain T, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|W Chain W, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|Z Chain Z, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|2 Chain 2, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|5 Chain 5, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|8 Chain 8, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|2KZ7|B Chain B, Solution Structure Of The Carmil Cah3aB DOMAIN BOUND TO
CAPPING Protein (Cp)
pdb|3AAA|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
V-1
pdb|3AAE|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|D Chain D, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|F Chain F, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|H Chain H, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|J Chain J, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
Length = 277
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 37 CFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAG 96
C+ HV+ + + R A T LWL K G + + G S T ++
Sbjct: 147 CWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSG--TMNLGGSLTRQMEKDETVS 204
Query: 97 QTVPHV 102
+ PH+
Sbjct: 205 DSSPHI 210
>pdb|3LK2|B Chain B, Crystal Structure Of Capz Bound To The Uncapping Motif
From Carmil
Length = 243
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 37 CFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAG 96
C+ HV+ + + R A T LWL K G + + G S T ++
Sbjct: 147 CWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSG--TMNLGGSLTRQMEKDETVS 204
Query: 97 QTVPHV 102
+ PH+
Sbjct: 205 DSSPHI 210
>pdb|3AA0|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Carmil
pdb|3AA1|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Ckip-1
pdb|3AA6|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Cd2ap
pdb|3AA7|B Chain B, Crystal Structure Of Actin Capping Protein
Length = 244
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 37 CFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAG 96
C+ HV+ + + R A T LWL K G + + G S T ++
Sbjct: 147 CWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSG--TMNLGGSLTRQMEKDETVS 204
Query: 97 QTVPHV 102
+ PH+
Sbjct: 205 DSSPHI 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,407,378
Number of Sequences: 62578
Number of extensions: 175068
Number of successful extensions: 587
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 45
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)