Query 038680
Match_columns 161
No_of_seqs 132 out of 1235
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 13:32:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3379 Diadenosine polyphosph 100.0 1.4E-32 3.1E-37 201.9 13.0 134 13-160 17-150 (150)
2 COG0537 Hit Diadenosine tetrap 100.0 8.7E-31 1.9E-35 196.0 14.7 126 10-160 12-137 (138)
3 cd01275 FHIT FHIT (fragile his 100.0 5.4E-28 1.2E-32 177.4 12.5 110 2-118 3-112 (126)
4 PF01230 HIT: HIT domain; Int 99.9 1.2E-27 2.6E-32 168.3 10.0 95 10-111 3-97 (98)
5 cd01277 HINT_subgroup HINT (hi 99.9 7.6E-27 1.6E-31 164.7 12.5 100 2-109 4-103 (103)
6 PRK10687 purine nucleoside pho 99.9 1.8E-26 3.9E-31 168.8 11.3 101 3-111 8-109 (119)
7 cd01276 PKCI_related Protein K 99.9 3.8E-25 8.1E-30 156.7 10.8 99 2-109 4-104 (104)
8 cd00468 HIT_like HIT family: H 99.9 3.2E-25 6.9E-30 151.3 10.0 86 16-108 1-86 (86)
9 cd01278 aprataxin_related apra 99.9 1.1E-22 2.4E-27 144.3 11.7 98 2-108 4-104 (104)
10 KOG3275 Zinc-binding protein o 99.9 1.1E-21 2.4E-26 140.9 10.7 96 6-111 23-121 (127)
11 TIGR00209 galT_1 galactose-1-p 99.9 9.6E-22 2.1E-26 166.7 11.5 103 2-111 198-304 (347)
12 cd00608 GalT Galactose-1-phosp 99.9 2E-21 4.4E-26 163.6 11.2 105 2-113 188-298 (329)
13 PRK11720 galactose-1-phosphate 99.9 3.7E-21 8E-26 163.0 10.9 102 3-111 199-304 (346)
14 PLN02643 ADP-glucose phosphory 99.8 1.8E-20 3.9E-25 158.4 12.5 100 15-121 211-316 (336)
15 PF11969 DcpS_C: Scavenger mRN 99.6 1.9E-15 4.2E-20 109.8 8.7 91 9-110 10-105 (116)
16 PF02744 GalP_UDP_tr_C: Galact 99.6 1.5E-14 3.2E-19 111.4 9.1 95 7-108 23-119 (166)
17 COG1085 GalT Galactose-1-phosp 99.5 2.8E-13 6E-18 114.0 10.9 103 3-112 190-298 (338)
18 KOG2958 Galactose-1-phosphate 99.5 1.2E-13 2.6E-18 113.5 7.5 97 6-109 208-309 (354)
19 KOG4359 Protein kinase C inhib 99.2 6E-11 1.3E-15 88.1 9.4 97 3-108 36-135 (166)
20 PF04677 CwfJ_C_1: Protein sim 98.8 1.7E-07 3.7E-12 68.7 11.3 87 12-111 24-110 (121)
21 KOG2476 Uncharacterized conser 97.9 0.00012 2.6E-09 64.2 10.7 85 14-111 334-418 (528)
22 KOG0562 Predicted hydrolase (H 97.8 2.4E-05 5.3E-10 60.0 3.6 91 9-110 11-106 (184)
23 KOG3969 Uncharacterized conser 97.5 0.0011 2.4E-08 54.8 10.2 95 8-111 155-258 (310)
24 COG4360 APA2 ATP adenylyltrans 97.5 0.00019 4.2E-09 58.3 5.2 72 21-110 93-164 (298)
25 PLN03103 GDP-L-galactose-hexos 97.3 0.00096 2.1E-08 57.9 7.7 72 19-108 168-241 (403)
26 cd00608 GalT Galactose-1-phosp 97.1 0.0036 7.9E-08 52.9 8.9 88 22-109 60-162 (329)
27 PLN02643 ADP-glucose phosphory 96.6 0.0099 2.1E-07 50.6 7.8 70 40-109 107-176 (336)
28 PRK05471 CDP-diacylglycerol py 96.5 0.015 3.3E-07 47.6 7.6 84 12-106 54-143 (252)
29 KOG2477 Uncharacterized conser 96.4 0.027 5.8E-07 50.3 9.4 71 37-111 439-509 (628)
30 COG1085 GalT Galactose-1-phosp 96.4 0.015 3.2E-07 49.6 7.5 68 41-108 95-162 (338)
31 TIGR00672 cdh CDP-diacylglycer 96.4 0.018 3.9E-07 47.1 7.7 83 13-106 54-142 (250)
32 PRK11720 galactose-1-phosphate 96.1 0.032 6.8E-07 47.8 7.9 68 40-109 105-172 (346)
33 PF02611 CDH: CDP-diacylglycer 95.8 0.033 7.1E-07 44.9 6.3 83 14-107 27-115 (222)
34 COG5075 Uncharacterized conser 95.4 0.044 9.6E-07 44.8 6.0 94 8-110 150-252 (305)
35 TIGR00209 galT_1 galactose-1-p 94.9 0.15 3.3E-06 43.6 8.1 68 40-109 105-172 (347)
36 KOG2720 Predicted hydrolase (H 94.7 0.036 7.7E-07 47.4 3.6 69 23-107 169-237 (431)
37 PF01087 GalP_UDP_transf: Gala 94.6 0.12 2.6E-06 40.1 6.3 69 41-109 111-179 (183)
38 COG2134 Cdh CDP-diacylglycerol 94.5 0.4 8.6E-06 38.5 8.8 84 13-107 55-144 (252)
39 PF01076 Mob_Pre: Plasmid reco 82.6 9.9 0.00021 29.7 7.9 52 55-113 93-145 (196)
40 PF14317 YcxB: YcxB-like prote 78.9 4.9 0.00011 24.4 4.1 40 12-68 21-60 (62)
41 COG4840 Uncharacterized protei 61.9 11 0.00025 24.7 3.0 31 115-159 39-69 (71)
42 TIGR03793 TOMM_pelo TOMM prope 57.8 24 0.00052 23.7 4.2 24 40-66 52-75 (77)
43 PF03432 Relaxase: Relaxase/Mo 56.1 21 0.00045 28.0 4.3 46 84-135 91-141 (242)
44 PF01446 Rep_1: Replication pr 40.9 59 0.0013 26.3 4.7 11 98-108 78-88 (233)
45 PF02729 OTCace_N: Aspartate/o 36.1 64 0.0014 23.9 4.0 31 49-79 1-31 (142)
46 COG2928 Uncharacterized conser 34.9 57 0.0012 26.4 3.7 37 19-62 152-188 (222)
47 COG0099 RpsM Ribosomal protein 34.1 70 0.0015 23.5 3.7 41 118-158 20-62 (121)
48 PF01868 UPF0086: Domain of un 33.9 82 0.0018 21.5 3.9 28 14-52 33-60 (89)
49 KOG2958 Galactose-1-phosphate 32.5 1.6E+02 0.0034 25.2 6.0 61 44-107 112-175 (354)
50 PF14394 DUF4423: Domain of un 26.3 1.7E+02 0.0037 22.3 5.0 51 48-108 119-170 (171)
51 smart00538 POP4 A domain found 25.5 74 0.0016 22.0 2.5 34 14-58 32-65 (92)
52 PRK13863 type IV secretion sys 25.3 3.7E+02 0.008 24.0 7.2 45 84-134 120-173 (446)
53 PF05840 Phage_GPA: Bacterioph 22.9 5.1E+02 0.011 22.6 8.0 51 53-107 204-256 (371)
54 TIGR01239 galT_2 galactose-1-p 22.0 2.4E+02 0.0052 25.6 5.5 124 10-160 189-328 (489)
55 PRK13878 conjugal transfer rel 21.7 1.1E+02 0.0024 29.2 3.6 80 40-134 68-151 (746)
56 CHL00137 rps13 ribosomal prote 20.9 2.1E+02 0.0045 20.8 4.3 41 118-158 20-62 (122)
No 1
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=201.87 Aligned_cols=134 Identities=53% Similarity=0.749 Sum_probs=125.8
Q ss_pred ceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecC
Q 038680 13 LTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDG 92 (161)
Q Consensus 13 ~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~ 92 (161)
-.++|++++.+||.+..|.. |||+||+|+|-+..+.||+.+|..+|+..++.+.+.|++.++..++|+++.+|
T Consensus 17 ~~VFykT~~sfafvNlkPvv-------pgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG 89 (150)
T KOG3379|consen 17 DHVFYKTKHSFAFVNLKPVV-------PGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDG 89 (150)
T ss_pred ceEEEeccceEEEEeccccc-------cceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccc
Confidence 36899999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 93 PEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 93 ~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
+.|||+|+|+|+||+||+.||+..++.||+.|++-+++ .+.|+.|+.|||++||..||..|
T Consensus 90 ~~AGQTVpHvHvHIlPR~~gDf~~Nd~IY~~L~~~~~e-------~~~r~~Rs~eEM~eEA~~lr~~~ 150 (150)
T KOG3379|consen 90 PEAGQTVPHVHVHILPRKAGDFGDNDLIYDELDKHEKE-------LEDRKPRSLEEMAEEAQRLREYF 150 (150)
T ss_pred cccCcccceeEEEEccccccccccchHHHHHHHhcccc-------cccCCcchHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999865432 26789999999999999999875
No 2
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.97 E-value=8.7e-31 Score=195.99 Aligned_cols=126 Identities=29% Similarity=0.441 Sum_probs=113.8
Q ss_pred ccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEE
Q 038680 10 RSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAI 89 (161)
Q Consensus 10 ~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~ 89 (161)
+....+|||+++++||+|++|++ +||+|||||+|+.++.+++++++.+|+..++++++++++.++++|||+++
T Consensus 12 e~~~~~Vye~~~~~afld~~P~~-------~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~ 84 (138)
T COG0537 12 EIPANKVYEDEHVLAFLDIYPAA-------PGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGI 84 (138)
T ss_pred CCCceEEEeCCCEEEEecCCCCC-------CCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEE
Confidence 66779999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 90 QDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 90 ~~~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
|+|..+||.|+|+|+|||||+.+|..++..+|+. +.. ..+++++.++++++.+
T Consensus 85 N~g~~agq~V~HlH~HvIPr~~~d~~~~~~~~~~---------------~~~---~~~~l~~~~~~i~~~l 137 (138)
T COG0537 85 NNGKAAGQEVFHLHIHIIPRYKGDDNFPGPGWGT---------------KVE---PNEELEELAEKIRKAL 137 (138)
T ss_pred ecCcccCcCcceEEEEEcCCcCCCCCcccccccc---------------cCC---cHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988877777664 011 1288888888888765
No 3
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.95 E-value=5.4e-28 Score=177.45 Aligned_cols=110 Identities=34% Similarity=0.472 Sum_probs=99.4
Q ss_pred ccccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 038680 2 RCRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHK 81 (161)
Q Consensus 2 ~~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~ 81 (161)
-|.......+..++|+|+++++||++..|.. +||+||+||+|+.++.+|+++++.+++.+++.+.+++++.++
T Consensus 3 fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~-------~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~ 75 (126)
T cd01275 3 FCDIPIKPDEDNLVFYRTKHSFAVVNLYPYN-------PGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYK 75 (126)
T ss_pred cccCccCCCccccEEEeCCCEEEEEcCCCCC-------CCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4776554432268999999999999999977 999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCCccCeEEEEEeecCCCCCCCCc
Q 038680 82 GSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKND 118 (161)
Q Consensus 82 ~~~~ni~~~~~~~ag~~v~HlH~HIIPR~~~d~~~~~ 118 (161)
+++||+++|+|+.+||+++|+|+|||||+.+|..+++
T Consensus 76 ~~~~n~~~~~g~~~gq~v~H~HiHiiPR~~~d~~~~~ 112 (126)
T cd01275 76 PDGFNIGINDGKAGGGIVPHVHIHIVPRWNGDTNFMP 112 (126)
T ss_pred CCceEEEEeCCcccCCCcCEEEEEEeCCcCCCCCCCC
Confidence 9999999999999999999999999999998766543
No 4
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.95 E-value=1.2e-27 Score=168.33 Aligned_cols=95 Identities=33% Similarity=0.508 Sum_probs=89.1
Q ss_pred ccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEE
Q 038680 10 RSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAI 89 (161)
Q Consensus 10 ~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~ 89 (161)
....++|||++.++||+|..|.+ +||+||+||+|++++.+|+++++.+++.++++++++++..++++++|+.+
T Consensus 3 e~~~~vv~e~~~~~~~~~~~p~~-------~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 75 (98)
T PF01230_consen 3 EIPARVVYEDDHFVAFLDIFPIS-------PGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVII 75 (98)
T ss_dssp SSHCEEEEE-SSEEEEEESSTSS-------TTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCeeEEEECCCEEEEEcCCCCC-------CeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccc
Confidence 34568999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCccCeEEEEEeecCC
Q 038680 90 QDGPEAGQTVPHVHIHVLPRKA 111 (161)
Q Consensus 90 ~~~~~ag~~v~HlH~HIIPR~~ 111 (161)
++|+.+||+++|+|+|||||+.
T Consensus 76 ~~g~~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 76 NNGPAAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp EESGGGTSSSSS-EEEEEEEST
T ss_pred cchhhhcCccCEEEEEEecccC
Confidence 9999999999999999999985
No 5
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.95 E-value=7.6e-27 Score=164.70 Aligned_cols=100 Identities=31% Similarity=0.452 Sum_probs=92.3
Q ss_pred ccccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 038680 2 RCRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHK 81 (161)
Q Consensus 2 ~~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~ 81 (161)
.|+.+-... ..++|+|+++|+||++..|.. |||++|+||+|++++.+|+++++.+++.+++++.+++++.++
T Consensus 4 ~c~ii~~e~-~~~iv~e~~~~~a~~~~~~~~-------pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~ 75 (103)
T cd01277 4 FCKIIAGEI-PSYKVYEDDHVLAFLDINPAS-------KGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALK 75 (103)
T ss_pred cccccCCCC-CCCEEEeCCCEEEEECCCCCC-------CeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 477655443 346999999999999888877 999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCCccCeEEEEEeec
Q 038680 82 GSSTTFAIQDGPEAGQTVPHVHIHVLPR 109 (161)
Q Consensus 82 ~~~~ni~~~~~~~ag~~v~HlH~HIIPR 109 (161)
+++||+++|+++.+|++++|+|+|||||
T Consensus 76 ~~~~n~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 76 ADGLNILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred CCceEEEEeCCcccCcccCEEEEEEccC
Confidence 9999999999999999999999999998
No 6
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.94 E-value=1.8e-26 Score=168.75 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=90.0
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHH-hhcC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLE-SYHK 81 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~-~~~~ 81 (161)
|+.+- .+....+||||+.++||+|.+|.+ +||+||+||+|++++.+|+++++.+++.+++.+.+.++ ..++
T Consensus 8 C~I~~-g~~p~~~v~edd~~~aflD~~P~~-------~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~ 79 (119)
T PRK10687 8 SKIIR-REIPSDIVYQDELVTAFRDISPQA-------PTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIA 79 (119)
T ss_pred hhhhc-CCCCCCEEEECCCEEEEEcCCCCC-------CccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCC
Confidence 65543 455678899999999999999998 99999999999999999999999999988887777664 4578
Q ss_pred CCceEEEEecCCCCCCccCeEEEEEeecCC
Q 038680 82 GSSTTFAIQDGPEAGQTVPHVHIHVLPRKA 111 (161)
Q Consensus 82 ~~~~ni~~~~~~~ag~~v~HlH~HIIPR~~ 111 (161)
+++||+++|+|+.+||+|+|+|+|||||+.
T Consensus 80 ~~g~~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 80 EDGYRLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred CCceEEEEeCCCcCCcccCEEEEEECCCcc
Confidence 899999999999999999999999999986
No 7
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.93 E-value=3.8e-25 Score=156.72 Aligned_cols=99 Identities=19% Similarity=0.250 Sum_probs=85.3
Q ss_pred ccccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 038680 2 RCRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHK 81 (161)
Q Consensus 2 ~~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~ 81 (161)
-|+.+-.. ...++|+|+++++||+|.+|.+ +||+||+||+|++++.+|+++++.++..+++.+ +++.+.++
T Consensus 4 fc~i~~~e-~~~~iv~e~~~~~a~~~~~p~~-------~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~-~~~~~~~~ 74 (104)
T cd01276 4 FCKIIRGE-IPAKKVYEDDEVLAFHDINPQA-------PVHILVIPKKHIASLSDATEEDEELLGHLLSAA-AKVAKDLG 74 (104)
T ss_pred ceecccCC-CccCEEEECCCEEEEECCCCCC-------CCEEEEEecceeCChHHcccccHHHHHHHHHHH-HHHHHHhC
Confidence 46665543 3478999999999999999988 999999999999999999999888888888877 44444455
Q ss_pred --CCceEEEEecCCCCCCccCeEEEEEeec
Q 038680 82 --GSSTTFAIQDGPEAGQTVPHVHIHVLPR 109 (161)
Q Consensus 82 --~~~~ni~~~~~~~ag~~v~HlH~HIIPR 109 (161)
+++||+++|+|+.+||+++|+|+|||++
T Consensus 75 ~~~~~~n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 75 IAEDGYRLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred CCCCCEEEEEeCCCCCCCceeEEEEEEeCC
Confidence 7899999999999999999999999986
No 8
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.93 E-value=3.2e-25 Score=151.34 Aligned_cols=86 Identities=41% Similarity=0.625 Sum_probs=83.6
Q ss_pred EEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCC
Q 038680 16 LMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEA 95 (161)
Q Consensus 16 i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~a 95 (161)
+||+++++||+|.+|.+ +||+||+||+|+.++.+|+++++.+++.+++++.+++++.++++++|+.+|+|+.+
T Consensus 1 ~~e~~~~~a~~~~~p~~-------~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~ 73 (86)
T cd00468 1 VPDDEHSFAFVNLKPAA-------PGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAA 73 (86)
T ss_pred CeecCcEEEEECCCCCC-------CCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccC
Confidence 58999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCeEEEEEee
Q 038680 96 GQTVPHVHIHVLP 108 (161)
Q Consensus 96 g~~v~HlH~HIIP 108 (161)
||+++|+|+||||
T Consensus 74 g~~v~H~H~hiiP 86 (86)
T cd00468 74 GQSVPHVHLHVLP 86 (86)
T ss_pred CCcCCEEEEEeCC
Confidence 9999999999998
No 9
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.89 E-value=1.1e-22 Score=144.31 Aligned_cols=98 Identities=17% Similarity=0.213 Sum_probs=86.5
Q ss_pred ccccccccc-cCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhh-
Q 038680 2 RCRRRLSLR-SGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESY- 79 (161)
Q Consensus 2 ~~~~~~~~~-~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~- 79 (161)
-|+.+.... .+.++|++++.++||.|.+|.+ +||+||+||+|+.++.+|+++++.+++.+++.+.+.+++.
T Consensus 4 fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~-------~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~ 76 (104)
T cd01278 4 FCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKA-------RHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSD 76 (104)
T ss_pred cccCccCCCCCCccEEEeCCCEEEEECCCCCC-------CceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHc
Confidence 477665443 4789999999999999999988 9999999999999999999999999999999888877765
Q ss_pred -cCCCceEEEEecCCCCCCccCeEEEEEee
Q 038680 80 -HKGSSTTFAIQDGPEAGQTVPHVHIHVLP 108 (161)
Q Consensus 80 -~~~~~~ni~~~~~~~ag~~v~HlH~HIIP 108 (161)
+++++||+++|.+|. |+|+|+|+|||.
T Consensus 77 ~~~~~~~n~g~h~~p~--~~v~H~H~Hvi~ 104 (104)
T cd01278 77 NTDPSEFRFGFHAPPF--TSVSHLHLHVIA 104 (104)
T ss_pred CCCccCeEEEeCCCCC--cCeeeEEEEeeC
Confidence 567899999999986 899999999983
No 10
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.87 E-value=1.1e-21 Score=140.87 Aligned_cols=96 Identities=22% Similarity=0.279 Sum_probs=83.6
Q ss_pred ccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccc---cCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 038680 6 RLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRRE---AKRFADLTADETTDLWLTAQKVGKQLESYHKG 82 (161)
Q Consensus 6 ~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~H---v~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~ 82 (161)
+++.+-...+|||++.++||.|+.|.+ |||+|||||+| .+...+.+++.+.+++.+++++++++.- .
T Consensus 23 Ii~keIPa~ii~Edd~~lAF~Di~Pqa-------p~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl---~ 92 (127)
T KOG3275|consen 23 IIRKEIPAKIIFEDDRCLAFHDIAPQA-------PGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGL---E 92 (127)
T ss_pred eecccCCcceEeeccceEEEEecCCCC-------CceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCc---c
Confidence 445555678999999999999999999 99999999999 4556777788899999999999887753 4
Q ss_pred CceEEEEecCCCCCCccCeEEEEEeecCC
Q 038680 83 SSTTFAIQDGPEAGQTVPHVHIHVLPRKA 111 (161)
Q Consensus 83 ~~~ni~~~~~~~ag~~v~HlH~HIIPR~~ 111 (161)
+|||+++|+|+.++|+|+|+|+||+|+..
T Consensus 93 ~gYrvv~NnG~~g~QsV~HvH~HvlgGrq 121 (127)
T KOG3275|consen 93 DGYRVVQNNGKDGHQSVYHVHLHVLGGRQ 121 (127)
T ss_pred cceeEEEcCCcccceEEEEEEEEEeCCcc
Confidence 57999999999999999999999999654
No 11
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.87 E-value=9.6e-22 Score=166.69 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=90.2
Q ss_pred cccccccc-ccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhc
Q 038680 2 RCRRRLSL-RSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYH 80 (161)
Q Consensus 2 ~~~~~~~~-~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~ 80 (161)
-|+.+-.. +.+.|+|+|+++|+||+|.+|.+ |||+||+||+|+.++.+|+++++.+|+.+++.+.+++++.+
T Consensus 198 fcdIi~~E~~~~~riV~End~fvAf~p~~p~~-------Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~ 270 (347)
T TIGR00209 198 LVDYVKRELADKSRTVVETEHWIAVVPYWAIW-------PFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLF 270 (347)
T ss_pred HHHHHHhHhhcCCeEEEECCCEEEEeccCCCC-------CCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555433 35789999999999999888876 99999999999999999999999999999999999999999
Q ss_pred CCC-ceEEEEecCCCCCC--ccCeEEEEEeecCC
Q 038680 81 KGS-STTFAIQDGPEAGQ--TVPHVHIHVLPRKA 111 (161)
Q Consensus 81 ~~~-~~ni~~~~~~~ag~--~v~HlH~HIIPR~~ 111 (161)
+.+ +||+++|+++..|+ ..+|+|+||+||..
T Consensus 271 ~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl~ 304 (347)
T TIGR00209 271 ETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLL 304 (347)
T ss_pred CCCCCcceeEEecccCCCCCcEEEEEEEEeCCcc
Confidence 655 99999999998876 45679999999953
No 12
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.86 E-value=2e-21 Score=163.58 Aligned_cols=105 Identities=19% Similarity=0.263 Sum_probs=91.6
Q ss_pred cccccc-ccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhc
Q 038680 2 RCRRRL-SLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYH 80 (161)
Q Consensus 2 ~~~~~~-~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~ 80 (161)
-|+.+- +...+.|+|+||++|+||++..|.. |||+||+||+|+.++.+|+++++.+|+.+++.+.+++++.+
T Consensus 188 fcdii~~E~~~~~riV~end~~va~~p~~~~~-------P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~ 260 (329)
T cd00608 188 LCDYLKLELESKERIVVENEHFVAVVPFWARW-------PFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLF 260 (329)
T ss_pred HHHHHHhhhhcCCeEEEeCCCEEEEEecCCCC-------CcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 355443 3456789999999999998666654 99999999999999999999999999999999999999999
Q ss_pred C-CCceEEEEecCCCCC----CccCeEEEEEeecCCCC
Q 038680 81 K-GSSTTFAIQDGPEAG----QTVPHVHIHVLPRKAGD 113 (161)
Q Consensus 81 ~-~~~~ni~~~~~~~ag----~~v~HlH~HIIPR~~~d 113 (161)
+ ..+||+++|+++..| +.++|+|+|++||+.++
T Consensus 261 ~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~~~ 298 (329)
T cd00608 261 NCSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRSAT 298 (329)
T ss_pred CCCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcCCC
Confidence 9 568999999998764 68899999999997743
No 13
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.85 E-value=3.7e-21 Score=163.05 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=89.5
Q ss_pred ccccccc-ccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 038680 3 CRRRLSL-RSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHK 81 (161)
Q Consensus 3 ~~~~~~~-~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~ 81 (161)
|+.+-.. ..+.|+|+|+++|+||++.+|.+ |||+||+||+|+.++.+|+++++.+|+.+++++++++++.++
T Consensus 199 cdii~~E~~~~~RiV~End~fvAf~p~~p~~-------P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~ 271 (346)
T PRK11720 199 VDYVQRELADGERIVVETEHWLAVVPYWAAW-------PFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQ 271 (346)
T ss_pred HHHHHhhhhcCCeEEEECCCEEEEeccccCC-------CCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5544333 35689999999999999888766 999999999999999999999999999999999999999997
Q ss_pred CC-ceEEEEecCCCCC--CccCeEEEEEeecCC
Q 038680 82 GS-STTFAIQDGPEAG--QTVPHVHIHVLPRKA 111 (161)
Q Consensus 82 ~~-~~ni~~~~~~~ag--~~v~HlH~HIIPR~~ 111 (161)
.+ +||+++|+++..| +.++|+|+||+||+.
T Consensus 272 ~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~ 304 (346)
T PRK11720 272 CSFPYSMGWHGAPFNGEENDHWQLHAHFYPPLL 304 (346)
T ss_pred CCCCCceeEEecccCCCCCeeEEEEEEEeCCcc
Confidence 55 7999999999754 578999999999953
No 14
>PLN02643 ADP-glucose phosphorylase
Probab=99.84 E-value=1.8e-20 Score=158.36 Aligned_cols=100 Identities=14% Similarity=0.245 Sum_probs=87.9
Q ss_pred EEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCC
Q 038680 15 KLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPE 94 (161)
Q Consensus 15 ~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~ 94 (161)
+|+|+++|+||++.+|.+ |||+||+||+|+.++.+|+++++.+|+.+++.+.+++...++..+||+++|+++.
T Consensus 211 iV~en~~f~Af~p~ap~~-------P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~pyN~~~~~~P~ 283 (336)
T PLN02643 211 LIDESSHFVSIAPFAATF-------PFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPYNYMIQTSPL 283 (336)
T ss_pred EEEeCCCEEEEeccccCC-------CCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeecCCC
Confidence 999999999999777765 9999999999999999999999999999999999999999998899999999997
Q ss_pred C--CCcc--CeEEEEEeecCC--CCCCCCchhh
Q 038680 95 A--GQTV--PHVHIHVLPRKA--GDFEKNDEIY 121 (161)
Q Consensus 95 a--g~~v--~HlH~HIIPR~~--~d~~~~~~iy 121 (161)
. ++.+ .|+|+||+||.. ++++.++++|
T Consensus 284 ~~~~~~~~~~H~hihi~PRl~~~aGfElg~g~~ 316 (336)
T PLN02643 284 GVEESNLPYTHWFLQIVPQLSGVGGFELGTGCY 316 (336)
T ss_pred ccccCcccceEEEEEEecCcCCccceeccCCCe
Confidence 3 4544 566669999975 4567776665
No 15
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.62 E-value=1.9e-15 Score=109.84 Aligned_cols=91 Identities=18% Similarity=0.197 Sum_probs=70.1
Q ss_pred cccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEecc-ccCCccCCCHHHHHHHHHHHHHHHHHHHhhcC----CC
Q 038680 9 LRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRR-EAKRFADLTADETTDLWLTAQKVGKQLESYHK----GS 83 (161)
Q Consensus 9 ~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~-Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~----~~ 83 (161)
.++..+++|+|+.|++|.|.+|.+ +.|+|||||+ |+.++.+|+.+.+.-+..+.....+.+++.+. ..
T Consensus 10 ~~~~~~vly~d~~~v~~~D~~P~a-------~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~~~ 82 (116)
T PF11969_consen 10 GEEPERVLYEDDDFVVFKDIYPKA-------PVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLDSD 82 (116)
T ss_dssp SSSGGGESEEETSEEEEE-TT-SC-------CEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-EGG
T ss_pred CCCCCcEEEEeCCEEEeeCCCCCc-------CcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 344779999999999999999999 9999999999 99999999998877777776666666666552 45
Q ss_pred ceEEEEecCCCCCCccCeEEEEEeecC
Q 038680 84 STTFAIQDGPEAGQTVPHVHIHVLPRK 110 (161)
Q Consensus 84 ~~ni~~~~~~~ag~~v~HlH~HIIPR~ 110 (161)
.+++|++..| +++|+|+|+|...
T Consensus 83 ~~~~gfH~~P----S~~HLHlHvi~~~ 105 (116)
T PF11969_consen 83 DIRLGFHYPP----SVYHLHLHVISPD 105 (116)
T ss_dssp GEEEEEESS-----SSSS-EEEEEETT
T ss_pred hhcccccCCC----CcceEEEEEccCC
Confidence 7999998766 8999999999854
No 16
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.56 E-value=1.5e-14 Score=111.41 Aligned_cols=95 Identities=20% Similarity=0.330 Sum_probs=66.3
Q ss_pred cccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC-Cce
Q 038680 7 LSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKG-SST 85 (161)
Q Consensus 7 ~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~-~~~ 85 (161)
.+.+++.|+|+++++|++|. |++ +.+|+.++|+||+|+.++.+++++|..+|+.+++.+++.+...|+. .+|
T Consensus 23 ~E~~~~~Riv~en~~f~a~v---P~~----a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~~pY 95 (166)
T PF02744_consen 23 MELAEGERIVYENEHFVAFV---PFA----ARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETSFPY 95 (166)
T ss_dssp HHHHH-TTEEEE-SSEEEE-----TT------STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---E
T ss_pred HhhcCCCEEEEECCceEEEE---ECc----ccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCCCCC
Confidence 57788999999999999996 777 7889999999999999999999999999999999999999999984 599
Q ss_pred EEEEecCCCCCCccC-eEEEEEee
Q 038680 86 TFAIQDGPEAGQTVP-HVHIHVLP 108 (161)
Q Consensus 86 ni~~~~~~~ag~~v~-HlH~HIIP 108 (161)
++++++.|..+..-. ++|+|+-|
T Consensus 96 ~m~ihqaP~~~~~~~~~fH~H~e~ 119 (166)
T PF02744_consen 96 NMGIHQAPVNGEDPEHWFHPHFEP 119 (166)
T ss_dssp EEEEE---SSSS--TT--EEEEE-
T ss_pred chhhhcCCCCcccchhhhhccccc
Confidence 999999998665432 25555544
No 17
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.48 E-value=2.8e-13 Score=114.02 Aligned_cols=103 Identities=18% Similarity=0.264 Sum_probs=87.9
Q ss_pred cccccc-cccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 038680 3 CRRRLS-LRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHK 81 (161)
Q Consensus 3 ~~~~~~-~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~ 81 (161)
|+.+-. ..++.|+|.++++|+||. |++ +.+|++++|+||+|+.++.++++++..+|+.+++.+...+.+.++
T Consensus 190 ~~~ve~E~~~~~R~v~e~~~~~a~~---Pf~----a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~ 262 (338)
T COG1085 190 CDLVEREKGDGERIVVENDHFLAFV---PFW----ARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFG 262 (338)
T ss_pred HHHHHHHhccCceEEecCceeEEec---ccc----ccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccC
Confidence 444433 345799999999999996 666 678999999999999999999999999999999999999999998
Q ss_pred CC-ceEEEEecCCCC-CCccCeEEEEEee---cCCC
Q 038680 82 GS-STTFAIQDGPEA-GQTVPHVHIHVLP---RKAG 112 (161)
Q Consensus 82 ~~-~~ni~~~~~~~a-g~~v~HlH~HIIP---R~~~ 112 (161)
.. .|+|++++.+.. .+.-+|+|+|++| |..+
T Consensus 263 ~~fpY~m~~h~ap~~~~~~~~~~h~~~~p~~~R~~t 298 (338)
T COG1085 263 NSFPYSMGFHQAPFNEVNEHYHLHAEIYPPLLRSAT 298 (338)
T ss_pred CCCceeeeeecCCCCcccccceEEEEEccccccccc
Confidence 76 899999998764 3556899999999 5543
No 18
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.47 E-value=1.2e-13 Score=113.46 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=84.1
Q ss_pred ccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC-Cc
Q 038680 6 RLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKG-SS 84 (161)
Q Consensus 6 ~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~-~~ 84 (161)
+.|..++.|+|.|+++|+++. ||+ ..+|+.+|||||+|++++.+|++-+..+|+.+++.+..++.+.|+. .+
T Consensus 208 ~~E~l~Kervv~enehfivvv---Pyw----A~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~KydnlfetsfP 280 (354)
T KOG2958|consen 208 KQEALEKERVVVENEHFIVVV---PYW----ATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYDNLFETSFP 280 (354)
T ss_pred HHHHhhhceEEeecCceEEEe---ehh----hcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHHHhhccCCc
Confidence 356788999999999999997 776 6789999999999999999999999999999999999999999988 58
Q ss_pred eEEEEecCCCCC--Ccc-Ce-EEEEEeec
Q 038680 85 TTFAIQDGPEAG--QTV-PH-VHIHVLPR 109 (161)
Q Consensus 85 ~ni~~~~~~~ag--~~v-~H-lH~HIIPR 109 (161)
|+|+++..|.++ +.. .| +|+|+.|.
T Consensus 281 Ysmg~h~aPl~~t~~e~~n~W~h~hFypp 309 (354)
T KOG2958|consen 281 YSMGIHGAPLGSTEQENYNHWLHMHFYPP 309 (354)
T ss_pred cccccccCCcccccccccchhhhhhcccc
Confidence 999999988753 111 34 58898874
No 19
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=99.25 E-value=6e-11 Score=88.15 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=70.7
Q ss_pred cccccccccCceE-EEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhc-
Q 038680 3 CRRRLSLRSGLTK-LMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYH- 80 (161)
Q Consensus 3 ~~~~~~~~~~~r~-i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~- 80 (161)
|+.+=...-+..+ ..|++.+++|-|++|.| ..|.|++||+|+.+..+|+.++..-+-.++..-...+.+..
T Consensus 36 CDia~r~~~~~ell~~En~~~V~fkDikPaA-------~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~ 108 (166)
T KOG4359|consen 36 CDIAGRQDPGTELLHCENEDLVCFKDIKPAA-------THHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNF 108 (166)
T ss_pred EEeecccCCCCceeEecCCcEEEEecCCccc-------cceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhcc
Confidence 4444333333333 45999999999999999 99999999999999999999875444334333333333333
Q ss_pred -CCCceEEEEecCCCCCCccCeEEEEEee
Q 038680 81 -KGSSTTFAIQDGPEAGQTVPHVHIHVLP 108 (161)
Q Consensus 81 -~~~~~ni~~~~~~~ag~~v~HlH~HIIP 108 (161)
.++...+++|..|. .+|.|+|+|+|-
T Consensus 109 td~~~~r~GFHLPPf--~SV~HLHlH~I~ 135 (166)
T KOG4359|consen 109 TDFTNVRMGFHLPPF--CSVSHLHLHVIA 135 (166)
T ss_pred CCchheeEeccCCCc--ceeeeeeEeeec
Confidence 34568899999986 889999999884
No 20
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=98.77 E-value=1.7e-07 Score=68.69 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=66.6
Q ss_pred CceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEec
Q 038680 12 GLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQD 91 (161)
Q Consensus 12 ~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~ 91 (161)
+--||.-+++++.-++..|.. +||++|+|..|+.++.+++++.+.|+....+.+.+...+ .|.+ + +.+-.
T Consensus 24 khliisiG~~~YLalpkg~L~-------~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~-~~~~-v-vf~E~ 93 (121)
T PF04677_consen 24 KHLIISIGDEVYLALPKGPLV-------PGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFAS-QGKD-V-VFFER 93 (121)
T ss_pred ceEEEEEcCcEEEEeCCCCcc-------CCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHH-cCCC-E-EEEEE
Confidence 556788888888888777755 999999999999999999999999998877777766554 3443 2 33322
Q ss_pred CCCCCCccCeEEEEEeecCC
Q 038680 92 GPEAGQTVPHVHIHVLPRKA 111 (161)
Q Consensus 92 ~~~ag~~v~HlH~HIIPR~~ 111 (161)
. .....|+|+++||-..
T Consensus 94 ~---~~~~~H~~iq~vPvp~ 110 (121)
T PF04677_consen 94 V---RKRNPHTHIQCVPVPK 110 (121)
T ss_pred e---CCCCcEEEEEEEEcCH
Confidence 2 3456899999999754
No 21
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00012 Score=64.19 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=59.2
Q ss_pred eEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCC
Q 038680 14 TKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGP 93 (161)
Q Consensus 14 r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~ 93 (161)
-||-=+++|+.=+...|.+ .||+||||..|+.++..|+++.+.++-.--..+.+. .+..|.+.+.+-.
T Consensus 334 LIVsIG~~~YlAlaKGpLs-------~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~m-yk~~g~~~vvfE~---- 401 (528)
T KOG2476|consen 334 LIVSIGNHFYLALAKGPLS-------SDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKM-YKKQGKDAVVFER---- 401 (528)
T ss_pred eEEEecceeEEeecCCCCC-------CCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHH-HHhcCCeEEEEEe----
Confidence 3566777888888777766 999999999999999999988877775544444443 3334444332322
Q ss_pred CCCCccCeEEEEEeecCC
Q 038680 94 EAGQTVPHVHIHVLPRKA 111 (161)
Q Consensus 94 ~ag~~v~HlH~HIIPR~~ 111 (161)
...-.-|+|+++||...
T Consensus 402 -~~~rs~Hlq~Qvipvpk 418 (528)
T KOG2476|consen 402 -QSYRSVHLQLQVIPVPK 418 (528)
T ss_pred -ecccceeeEEEEEeccc
Confidence 11234799999999765
No 22
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=97.77 E-value=2.4e-05 Score=59.98 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=57.0
Q ss_pred cccCceEEEEc-CcEEEEeCCCCccccCCccCcEEEEEEecc-ccCCccCCCHHHHHHH---HHHHHHHHHHHHhhcCCC
Q 038680 9 LRSGLTKLMRR-KCSIALLSPTPWSTCARCFLHEHVLVCSRR-EAKRFADLTADETTDL---WLTAQKVGKQLESYHKGS 83 (161)
Q Consensus 9 ~~~~~r~i~e~-e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~-Hv~~l~~L~~ee~~~l---~~~~~~v~~~l~~~~~~~ 83 (161)
..+..+++.++ |.++++-|.+|.+ ..|+||+|++ -++++...-.+.+.-+ -.....+...+...--..
T Consensus 11 i~k~e~V~~es~d~vvvIrD~fPKa-------~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~~~ 83 (184)
T KOG0562|consen 11 IPKPENVYIESPDDVVVIRDKFPKA-------RMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEALCN 83 (184)
T ss_pred CCccceeeccCcccEEEEcccCccc-------eeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhhhh
Confidence 34556667777 7999999999999 9999999964 4556655555543222 122222333222111122
Q ss_pred ceEEEEecCCCCCCccCeEEEEEeecC
Q 038680 84 STTFAIQDGPEAGQTVPHVHIHVLPRK 110 (161)
Q Consensus 84 ~~ni~~~~~~~ag~~v~HlH~HIIPR~ 110 (161)
-|++|+| ++-+..++|+|||...
T Consensus 84 ~f~vG~H----avPSM~~LHLHVISkD 106 (184)
T KOG0562|consen 84 YFRVGFH----AVPSMNNLHLHVISKD 106 (184)
T ss_pred heeeeec----cCcchhheeEEEeecc
Confidence 4666765 5566889999999864
No 23
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0011 Score=54.78 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=69.6
Q ss_pred ccccCceEEEEcC----cEEEEeC--CCCccccCCccCcEEEEEEeccc-cCCccCCCHHHHHHHHHHHHHHHHHHHhhc
Q 038680 8 SLRSGLTKLMRRK----CSIALLS--PTPWSTCARCFLHEHVLVCSRRE-AKRFADLTADETTDLWLTAQKVGKQLESYH 80 (161)
Q Consensus 8 ~~~~~~r~i~e~e----~~~a~~~--~~P~~~~~~~~~~Gh~LIiPk~H-v~~l~~L~~ee~~~l~~~~~~v~~~l~~~~ 80 (161)
+.++..|++|++. .|+.+.| +.+.. .-.-|+|.|-+++ +.|+.||.++++.-|-.+-.+...++...|
T Consensus 155 ~~aE~driV~ed~d~~nGFillPDlKWdgqt-----ld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y 229 (310)
T KOG3969|consen 155 KKAEDDRIVYEDPDPENGFILLPDLKWDGQT-----LDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRY 229 (310)
T ss_pred ccccccceEEecCCCcCCeEEccccccCccc-----ccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456678999765 4566654 23322 3345667666666 999999999999999888888888888877
Q ss_pred C--CCceEEEEecCCCCCCccCeEEEEEeecCC
Q 038680 81 K--GSSTTFAIQDGPEAGQTVPHVHIHVLPRKA 111 (161)
Q Consensus 81 ~--~~~~ni~~~~~~~ag~~v~HlH~HIIPR~~ 111 (161)
| ++...|.+|--| +.+|+|+||++-..
T Consensus 230 ~v~~dqlrmf~HYqP----SyYHlHVHi~nik~ 258 (310)
T KOG3969|consen 230 GVDPDQLRMFFHYQP----SYYHLHVHIVNIKH 258 (310)
T ss_pred CCCchhEEEEEEecC----ceEEEEEEEEeccC
Confidence 6 446888887554 46899999999543
No 24
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=97.49 E-value=0.00019 Score=58.28 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=54.3
Q ss_pred cEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccC
Q 038680 21 CSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVP 100 (161)
Q Consensus 21 ~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~ag~~v~ 100 (161)
....+++.+|.. +.|+|||.++-...=+-|+..++...+.++. +.+|. +.+|.||.+|.+.+
T Consensus 93 th~~llNKF~VV-------deHlLiVTrefedQ~s~LTl~Df~ta~~vL~----------~ldgl-vFYNsGp~aGaSq~ 154 (298)
T COG4360 93 THKLLLNKFPVV-------DEHLLIVTREFEDQESALTLADFTTAYAVLC----------GLDGL-VFYNSGPIAGASQD 154 (298)
T ss_pred hHhhhhhcCCcc-------cceeEEeehhhhhccccCCHHHHHHHHHHHh----------cccce-EEecCCCCcCcCCC
Confidence 455677888877 9999999998765555566666654443332 34554 77899999999999
Q ss_pred eEEEEEeecC
Q 038680 101 HVHIHVLPRK 110 (161)
Q Consensus 101 HlH~HIIPR~ 110 (161)
|-|++++|..
T Consensus 155 HkHLQi~pmP 164 (298)
T COG4360 155 HKHLQIVPMP 164 (298)
T ss_pred ccceeEeecc
Confidence 9999999975
No 25
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=97.31 E-value=0.00096 Score=57.92 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=46.9
Q ss_pred cCcEEEEeCCCCccccCCccCcEEEEEEecc--ccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCC
Q 038680 19 RKCSIALLSPTPWSTCARCFLHEHVLVCSRR--EAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAG 96 (161)
Q Consensus 19 ~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~--Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~ag 96 (161)
+....++.+++|.. +||++++|.. |.+.. ++.+-+ ..+-.++. ..+..+|.+++|. ..|.
T Consensus 168 ~s~~~VlINvsPI~-------~gH~LlvP~~~~~lPQ~--i~~~~l----~la~~~a~----~~~~p~frvgYNS-lGA~ 229 (403)
T PLN03103 168 NSPNVVAINVSPIE-------YGHVLLVPRVLDCLPQR--IDPDSF----LLALYMAA----EANNPYFRVGYNS-LGAF 229 (403)
T ss_pred CCccEEEEeCCCCc-------cCeEEEcCCcccCCCeE--ecHHHH----HHHHHHHH----hcCCCcEEEEecC-Cccc
Confidence 44557888999977 9999999765 55543 333222 11111221 2345679999877 5455
Q ss_pred CccCeEEEEEee
Q 038680 97 QTVPHVHIHVLP 108 (161)
Q Consensus 97 ~~v~HlH~HIIP 108 (161)
.++.|+|+|..-
T Consensus 230 ASvNHLHFQa~y 241 (403)
T PLN03103 230 ATINHLHFQAYY 241 (403)
T ss_pred cCcceeeeeecc
Confidence 699999999664
No 26
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=97.09 E-value=0.0036 Score=52.92 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=65.2
Q ss_pred EEEEeCCCCccccCCcc---------------CcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceE
Q 038680 22 SIALLSPTPWSTCARCF---------------LHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTT 86 (161)
Q Consensus 22 ~~a~~~~~P~~~~~~~~---------------~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~n 86 (161)
..+|.+.+|........ ....|+|.+-+|..++.+++.+++.++..+.+.-...+.+.-+..-+.
T Consensus 60 ~~v~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~ 139 (329)
T cd00608 60 VRVFENDFPALKPDAPAPEDSDDGLFRTAPARGRCEVICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQ 139 (329)
T ss_pred EEEECCCCccccCCCCCCcccCCcccccCCcceeEEEEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 56777777765322211 123788999999999999999999998888777777776432333355
Q ss_pred EEEecCCCCCCccCeEEEEEeec
Q 038680 87 FAIQDGPEAGQTVPHVHIHVLPR 109 (161)
Q Consensus 87 i~~~~~~~ag~~v~HlH~HIIPR 109 (161)
+..|.|+.+|.|.+|-|.+|+.-
T Consensus 140 if~N~G~~aGaSl~HpH~Qi~a~ 162 (329)
T cd00608 140 IFENKGAEMGASLPHPHGQIWAL 162 (329)
T ss_pred EEeecCcccccCCCCCCeeeeeC
Confidence 67788999999999999998753
No 27
>PLN02643 ADP-glucose phosphorylase
Probab=96.61 E-value=0.0099 Score=50.60 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=56.3
Q ss_pred cEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCeEEEEEeec
Q 038680 40 HEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPR 109 (161)
Q Consensus 40 ~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~ag~~v~HlH~HIIPR 109 (161)
...|+|..-+|..++.+|+.+++..+..+-+.-...|.+.-+..=+.+.-|.|+.+|.+.+|-|.+|+.-
T Consensus 107 ~~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a~ 176 (336)
T PLN02643 107 FHDVVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIAL 176 (336)
T ss_pred EEEEEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEec
Confidence 3678999999999999999999999888877766666543333345566788999999999999998863
No 28
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=96.46 E-value=0.015 Score=47.61 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=60.7
Q ss_pred CceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccC---CC---HHHHHHHHHHHHHHHHHHHhhcCCCce
Q 038680 12 GLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFAD---LT---ADETTDLWLTAQKVGKQLESYHKGSST 85 (161)
Q Consensus 12 ~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~---L~---~ee~~~l~~~~~~v~~~l~~~~~~~~~ 85 (161)
.+..|-....+++|.|+.- |.|.|+||-..++-+.+ ++ +.-+..-|..-..+.+++.+....+.+
T Consensus 54 PC~~Vd~~~gyvvlKD~~G---------p~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~l 124 (252)
T PRK05471 54 PCAEVDPQAGYVLLKDRNG---------PLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAV 124 (252)
T ss_pred CCeeEccCCCeEEEecCCC---------CcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhhe
Confidence 3555666788999988777 78999999999765432 22 344666666666677777776655567
Q ss_pred EEEEecCCCCCCccCeEEEEE
Q 038680 86 TFAIQDGPEAGQTVPHVHIHV 106 (161)
Q Consensus 86 ni~~~~~~~ag~~v~HlH~HI 106 (161)
.+.+|. ..|.+..|+|+||
T Consensus 125 sLaINS--~~gRSQnQLHIHI 143 (252)
T PRK05471 125 SLAINS--RYGRTQDQLHIHI 143 (252)
T ss_pred EEEecC--CCCccccceeeeh
Confidence 777765 4588899999996
No 29
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.027 Score=50.34 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=49.8
Q ss_pred ccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCeEEEEEeecCC
Q 038680 37 CFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPRKA 111 (161)
Q Consensus 37 ~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~ag~~v~HlH~HIIPR~~ 111 (161)
.+..||++|+|-.|..+-..|+++.|.++-...+.++..... .+-+ + +.+-+.+. -+.-+|+-+|.||...
T Consensus 439 gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas-~n~d-v-iFyE~a~~-l~rrpH~~IeCIPvpq 509 (628)
T KOG2477|consen 439 GLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFAS-MNLD-V-IFYENAPS-LQRRPHTAIECIPVPQ 509 (628)
T ss_pred ccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHh-cCCC-e-EEEeccCc-cccCCceeEEEeechH
Confidence 566999999999999998999999998886665555544432 3333 2 22323222 2447999999999865
No 30
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=96.40 E-value=0.015 Score=49.61 Aligned_cols=68 Identities=22% Similarity=0.286 Sum_probs=57.6
Q ss_pred EEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCeEEEEEee
Q 038680 41 EHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLP 108 (161)
Q Consensus 41 Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~ag~~v~HlH~HIIP 108 (161)
..++|....|-.++.+++.+++.++..+.+...+.|.+.-...-+.+..|.|+.+|.|.+|-|.+|+.
T Consensus 95 ~~VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 95 SRVIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred eEEEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceee
Confidence 34777888899999999999999999999998888877544445677889999999999999999764
No 31
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=96.39 E-value=0.018 Score=47.13 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=59.2
Q ss_pred ceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccC------CCHHHHHHHHHHHHHHHHHHHhhcCCCceE
Q 038680 13 LTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFAD------LTADETTDLWLTAQKVGKQLESYHKGSSTT 86 (161)
Q Consensus 13 ~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~------L~~ee~~~l~~~~~~v~~~l~~~~~~~~~n 86 (161)
...|-....+++|.|+.- |.|.|+||-..++-+.+ -++.-+.+-|..-..+.+++........+.
T Consensus 54 C~~Vd~~~gyvvlKD~~G---------p~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~ls 124 (250)
T TIGR00672 54 CAEVKPNAGYVVLKDLNG---------PLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVS 124 (250)
T ss_pred cceEcCCCCeEEEeCCCC---------CceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhhee
Confidence 444545788999988876 78999999999765532 223446666666666777777766555677
Q ss_pred EEEecCCCCCCccCeEEEEE
Q 038680 87 FAIQDGPEAGQTVPHVHIHV 106 (161)
Q Consensus 87 i~~~~~~~ag~~v~HlH~HI 106 (161)
+++|. ..|.+..|+|+||
T Consensus 125 LaINS--~~gRSQnQLHIHI 142 (250)
T TIGR00672 125 LAINS--RTGRSQNHFHIHI 142 (250)
T ss_pred EEecC--CCCcccccceeeH
Confidence 77765 4588899999995
No 32
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=96.06 E-value=0.032 Score=47.76 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=56.5
Q ss_pred cEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCeEEEEEeec
Q 038680 40 HEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPR 109 (161)
Q Consensus 40 ~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~ag~~v~HlH~HIIPR 109 (161)
...|+|..-+|..++.+|+.+++..+..+.+.-...|.+. ..=+.+.-|.|+.+|.+.+|-|.+|+.-
T Consensus 105 ~~eViv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~--i~yv~iF~N~G~~~GaSl~HPH~Qi~a~ 172 (346)
T PRK11720 105 TSRVICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKT--YPWVQVFENKGAAMGCSNPHPHGQIWAN 172 (346)
T ss_pred EEEEEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhC--CcEEEEEeecCcccCcCCCCCceeeeeC
Confidence 3678999999999999999999999999888877777664 3334556777999999999999998853
No 33
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=95.76 E-value=0.033 Score=44.94 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=46.4
Q ss_pred eEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccC------CCHHHHHHHHHHHHHHHHHHHhhcCCCceEE
Q 038680 14 TKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFAD------LTADETTDLWLTAQKVGKQLESYHKGSSTTF 87 (161)
Q Consensus 14 r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~------L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni 87 (161)
..|-....++++.|+.- +.|.|+||-..++-+.+ =++.-+..-|..-..+.+++.+....+.+.+
T Consensus 27 ~~Vd~~~gyvvlKd~~G---------~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsL 97 (222)
T PF02611_consen 27 AQVDLQQGYVVLKDRNG---------PLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSL 97 (222)
T ss_dssp SEEETTTTEEEEE-SSS---------SS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEE
T ss_pred eEEcCCCCEEEEeCCCC---------CccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEE
Confidence 34444678888887666 77999999999765432 2234566666555667777777666667888
Q ss_pred EEecCCCCCCccCeEEEEEe
Q 038680 88 AIQDGPEAGQTVPHVHIHVL 107 (161)
Q Consensus 88 ~~~~~~~ag~~v~HlH~HII 107 (161)
++|.. .|.+..|+|+||=
T Consensus 98 aINS~--~gRsQdQLHIHis 115 (222)
T PF02611_consen 98 AINSQ--YGRSQDQLHIHIS 115 (222)
T ss_dssp EEB-G--GG-S--S--EEEE
T ss_pred EecCc--cCccccceEeEhh
Confidence 88764 4788899999964
No 34
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.044 Score=44.82 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=61.9
Q ss_pred ccccCceEEEEcCc----EEEEeC--CCCccccCCccCcEEEEEEe-ccccCCccCCCHHHHHHHHHHHHHHHHHHHhhc
Q 038680 8 SLRSGLTKLMRRKC----SIALLS--PTPWSTCARCFLHEHVLVCS-RREAKRFADLTADETTDLWLTAQKVGKQLESYH 80 (161)
Q Consensus 8 ~~~~~~r~i~e~e~----~~a~~~--~~P~~~~~~~~~~Gh~LIiP-k~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~ 80 (161)
+.....||+|+++. |+++.| ..|.. .-.-|+++|- +.-+.++.||...++.-+...-.++...+...|
T Consensus 150 ~~ae~erivyed~~~~ngfiiiPD~KWd~qt-----~dsL~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f 224 (305)
T COG5075 150 EGAENERIVYEDESVINGFIIIPDMKWDGQT-----VDSLYLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQF 224 (305)
T ss_pred cccccceeEecCcccccCceeccccccCccc-----eeeeeEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhc
Confidence 45677899999874 455644 22322 2233555544 446899999999998877777666665555445
Q ss_pred C--CCceEEEEecCCCCCCccCeEEEEEeecC
Q 038680 81 K--GSSTTFAIQDGPEAGQTVPHVHIHVLPRK 110 (161)
Q Consensus 81 ~--~~~~ni~~~~~~~ag~~v~HlH~HIIPR~ 110 (161)
+ ++...|.+|-.| +.+|+|+||+--.
T Consensus 225 ~vd~n~l~mfvHY~P----sYyhlHvHI~nIk 252 (305)
T COG5075 225 GVDPNELRMFVHYQP----SYYHLHVHIVNIK 252 (305)
T ss_pred CcChhHeEEEEEecc----ceEEEEEEEEeec
Confidence 4 445777776544 4689999999743
No 35
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=94.90 E-value=0.15 Score=43.62 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=55.4
Q ss_pred cEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCeEEEEEeec
Q 038680 40 HEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPR 109 (161)
Q Consensus 40 ~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~ag~~v~HlH~HIIPR 109 (161)
...|+|-.-+|-.++.+|+.+++..+..+-+.-...|.. +..=+.+.-|.|..+|.+.+|-|-+|+.-
T Consensus 105 ~~eVii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~~l~~--~i~yv~iF~N~G~~~GaSl~HPH~Qi~a~ 172 (347)
T TIGR00209 105 TSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGK--TYPWVQIFENKGAAMGCSNPHPHGQIWAN 172 (347)
T ss_pred eEEEEEeCCCccCChhHCCHHHHHHHHHHHHHHHHHHHh--CCcEEEEEeecCcccCcCCCCCceeeeeC
Confidence 367899999999999999999999998888877777763 23334456677999999999999998853
No 36
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=94.68 E-value=0.036 Score=47.43 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=40.1
Q ss_pred EEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCeE
Q 038680 23 IALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHV 102 (161)
Q Consensus 23 ~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~ag~~v~Hl 102 (161)
++..+..|.- .||+||||+----.-.-++-+. +.-++. +....+.+-|.+++|. ..+..+|.|+
T Consensus 169 vvaIN~sPie-------~~H~LiiP~V~kc~pQrit~~a---l~lav~-----~m~~~dd~~frlgyNS-lga~AsVNHL 232 (431)
T KOG2720|consen 169 VVAINVSPIE-------YGHVLIIPRVLKCLPQRITHKA---LLLAVT-----MMAEADDPYFRLGYNS-LGAFASVNHL 232 (431)
T ss_pred eEEEecCccc-------cCcEEEecchhccCcceeeHHH---HHHHHH-----HHHhcCCchhheeccc-chhhhhhhhh
Confidence 5556777866 9999999986432222233222 111111 1122234467788765 3356789999
Q ss_pred EEEEe
Q 038680 103 HIHVL 107 (161)
Q Consensus 103 H~HII 107 (161)
|+|..
T Consensus 233 Hfha~ 237 (431)
T KOG2720|consen 233 HFHAY 237 (431)
T ss_pred hhhhh
Confidence 99965
No 37
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=94.62 E-value=0.12 Score=40.14 Aligned_cols=69 Identities=20% Similarity=0.318 Sum_probs=49.2
Q ss_pred EEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCeEEEEEeec
Q 038680 41 EHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPR 109 (161)
Q Consensus 41 Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~ag~~v~HlH~HIIPR 109 (161)
..|+|-.-+|-.++.+|+.++...+..+.+.-...|.+.-.+.=+.+.-|.|..+|.+..|-|-+|+..
T Consensus 111 hEViIe~p~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a~ 179 (183)
T PF01087_consen 111 HEVIIESPKHERTLADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIAL 179 (183)
T ss_dssp EEEEES-SSTT--GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEEE
T ss_pred eEEEEeCCCCCCChhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEecC
Confidence 478888889999999999999999888877766666554344445556677999999999999999853
No 38
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=94.48 E-value=0.4 Score=38.51 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=55.1
Q ss_pred ceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccC---C---CHHHHHHHHHHHHHHHHHHHhhcCCCceE
Q 038680 13 LTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFAD---L---TADETTDLWLTAQKVGKQLESYHKGSSTT 86 (161)
Q Consensus 13 ~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~---L---~~ee~~~l~~~~~~v~~~l~~~~~~~~~n 86 (161)
+..|-+..-+.++.|.+- |.-.|++|-.+++-+.+ + ++.-+-.-|.+--.+.+++..-.....+.
T Consensus 55 CaeV~~~AG~av~Kd~~g---------PlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvs 125 (252)
T COG2134 55 CAEVKPQAGYAVLKDRNG---------PLQYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVS 125 (252)
T ss_pred ceeecCCCceEEEeccCC---------CceeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceE
Confidence 344556667788877766 66779999999765432 1 12234445555555777777666555676
Q ss_pred EEEecCCCCCCccCeEEEEEe
Q 038680 87 FAIQDGPEAGQTVPHVHIHVL 107 (161)
Q Consensus 87 i~~~~~~~ag~~v~HlH~HII 107 (161)
+.+|. ..|.+.+|+|+||=
T Consensus 126 LaINs--~~gRtQdqlHIHIS 144 (252)
T COG2134 126 LAINS--KNGRTQDQLHIHIS 144 (252)
T ss_pred EEecC--ccCccccceEEEEE
Confidence 77764 45788899999964
No 39
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=82.63 E-value=9.9 Score=29.68 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=35.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCCCCccCeEEEEEeecCCCC
Q 038680 55 ADLTADETTDLWLTAQKVGKQLESYHKGS-STTFAIQDGPEAGQTVPHVHIHVLPRKAGD 113 (161)
Q Consensus 55 ~~L~~ee~~~l~~~~~~v~~~l~~~~~~~-~~ni~~~~~~~ag~~v~HlH~HIIPR~~~d 113 (161)
.+++++++.++.. .....+.+.+|.+ -++..+|... +.||+|+-+||...+.
T Consensus 93 ~~~~~e~~~~~~~---~~~~~~~~r~g~~ni~~a~vH~DE----~tPH~H~~~vP~~~~~ 145 (196)
T PF01076_consen 93 NDLDPEQQKRWFE---DSLEWLQERYGNENIVSAVVHLDE----TTPHMHFDVVPIDEDG 145 (196)
T ss_pred cchhhHHHHHHHH---HHHHHHHHHCCchhEEEEEEECCC----CCcceEEEEeeccccc
Confidence 4556666555444 5556677778754 4667777654 3799999999997764
No 40
>PF14317 YcxB: YcxB-like protein
Probab=78.88 E-value=4.9 Score=24.37 Aligned_cols=40 Identities=13% Similarity=0.276 Sum_probs=26.1
Q ss_pred CceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHH
Q 038680 12 GLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLT 68 (161)
Q Consensus 12 ~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~ 68 (161)
....+.++++++.+. .. .+..++|||+- +++++..++...
T Consensus 21 ~i~~v~e~~~~~~l~----~~-------~~~~~~iPk~~------f~~~e~~~f~~~ 60 (62)
T PF14317_consen 21 DIKKVVETKDYFYLY----LG-------KNQAFIIPKRA------FSEEEKEEFREF 60 (62)
T ss_pred heEEEEEeCCEEEEE----EC-------CCeEEEEEHHH------CCHhHHHHHHHH
Confidence 345678888888873 12 55789999985 345555555443
No 41
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.91 E-value=11 Score=24.75 Aligned_cols=31 Identities=39% Similarity=0.489 Sum_probs=24.0
Q ss_pred CCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhh
Q 038680 115 EKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSL 159 (161)
Q Consensus 115 ~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (161)
+.-+.||+.+.++. ..||.||+..|.+|+++
T Consensus 39 edLtdiy~mvkkke--------------nfSpsEmqaiA~eL~rl 69 (71)
T COG4840 39 EDLTDIYDMVKKKE--------------NFSPSEMQAIADELGRL 69 (71)
T ss_pred HHHHHHHHHHHHhc--------------cCCHHHHHHHHHHHHHh
Confidence 34468899987653 35799999999999875
No 42
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=57.82 E-value=24 Score=23.71 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=20.0
Q ss_pred cEEEEEEeccccCCccCCCHHHHHHHH
Q 038680 40 HEHVLVCSRREAKRFADLTADETTDLW 66 (161)
Q Consensus 40 ~Gh~LIiPk~Hv~~l~~L~~ee~~~l~ 66 (161)
.-|.||+|.+.-. +||++++..++
T Consensus 52 ~~~~lVlP~~P~~---~lse~~L~~va 75 (77)
T TIGR03793 52 TVLYLVLPVNPDI---ELTDEQLDAVA 75 (77)
T ss_pred CeEEEEecCCCCC---CCCHHHHHHhh
Confidence 5588999999977 89999987654
No 43
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=56.07 E-value=21 Score=28.02 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=25.8
Q ss_pred ceEEEEecCCCCCCccCeEEEEEe-ecCCCC-CC--CCc-hhhhhhHHHHHHHhhhc
Q 038680 84 STTFAIQDGPEAGQTVPHVHIHVL-PRKAGD-FE--KND-EIYDAIEVKEKELQQKL 135 (161)
Q Consensus 84 ~~ni~~~~~~~ag~~v~HlH~HII-PR~~~d-~~--~~~-~iy~~l~~~~~~~~~~~ 135 (161)
.+-++.|.. -.|.|+||+ ++..-+ .. ... ..+..+.....++....
T Consensus 91 ~~v~~~H~D------~~h~H~Hivin~v~~~tGk~~~~~~~~~~~~~~~~~~l~~~~ 141 (242)
T PF03432_consen 91 QYVVVVHTD------TDHPHVHIVINRVDLDTGKKLNPSNKDYRRLREASDELEKEY 141 (242)
T ss_pred ceEEEECCC------cCeeeeeEEEeecccccccccccchhHHHHHHHHHHHHHHhc
Confidence 555666543 469999966 565422 11 112 25666666666666653
No 44
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=40.89 E-value=59 Score=26.28 Aligned_cols=11 Identities=45% Similarity=0.462 Sum_probs=7.7
Q ss_pred ccCeEEEEEee
Q 038680 98 TVPHVHIHVLP 108 (161)
Q Consensus 98 ~v~HlH~HIIP 108 (161)
+.+|-|+||+=
T Consensus 78 g~~HPH~Hvll 88 (233)
T PF01446_consen 78 GSWHPHFHVLL 88 (233)
T ss_pred CeeccceEEEE
Confidence 34788888663
No 45
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=36.14 E-value=64 Score=23.89 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=26.4
Q ss_pred cccCCccCCCHHHHHHHHHHHHHHHHHHHhh
Q 038680 49 REAKRFADLTADETTDLWLTAQKVGKQLESY 79 (161)
Q Consensus 49 ~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~ 79 (161)
||.-++.+++++++..+...+..+.+.....
T Consensus 1 r~~l~~~dls~~ei~~ll~~A~~lk~~~~~~ 31 (142)
T PF02729_consen 1 RHLLSIKDLSPEEIEALLDLAKELKAAPKKG 31 (142)
T ss_dssp SEBSSGGGS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCchhhCCHHHHHHHHHHHHHHHhhhhcC
Confidence 5888999999999999999999988877765
No 46
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=34.93 E-value=57 Score=26.38 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=27.7
Q ss_pred cCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHH
Q 038680 19 RKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADET 62 (161)
Q Consensus 19 ~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~ 62 (161)
+++..+|++..|. -+.|.++++||..+. ..|++-|+.
T Consensus 152 ~~~v~VfvPTTPN------PTsGfl~~Vpkedi~-~ldmtvEda 188 (222)
T COG2928 152 RPMVAVFVPTTPN------PTSGFLLLVPKEDIV-PLDMTVEDA 188 (222)
T ss_pred CceEEEEcCCCCC------CCcceEEEEEHHHce-eccccHHHH
Confidence 5788888876664 468999999999987 445666554
No 47
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=34.11 E-value=70 Score=23.46 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=33.1
Q ss_pred chhhhhhHHHHHHHhhhcCCCcc--CcCCCHHHHHHHHHHHHh
Q 038680 118 DEIYDAIEVKEKELQQKLDLDKE--RKDRSLEEMNQEADQYRS 158 (161)
Q Consensus 118 ~~iy~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~ 158 (161)
+.||+.....+.++..++++++. ..++++||++.+.+.+.+
T Consensus 20 t~IyGIG~~~a~~I~~~~gi~~~~r~~eLteeei~~ir~~i~~ 62 (121)
T COG0099 20 TYIYGIGRRRAKEICKKAGIDPDKRVGELTEEEIERLRDAIQN 62 (121)
T ss_pred hhhccccHHHHHHHHHHcCCCHhHhhccCCHHHHHHHHHHHHh
Confidence 57888888888888888888777 567889999988887764
No 48
>PF01868 UPF0086: Domain of unknown function UPF0086; InterPro: IPR002730 The p29 subunit (also known as Rpp29 or Pop4) of the related ribonucleoproteins ribonuclease (RNase) P and RNase MRP can be found in both eukaryotes and arachea []. The structure of the RNase P subunit, Rpp29, from Methanobacterium thermoautotrophicum has been determined. Mth Rpp29 is a member of the oligonucleotide/oligosaccharide binding fold family. It contains a structured beta-barrel core and unstructured N- and C-terminal extensions bearing several highly conserved amino acid residues that could be involved in RNA contacts in the protein-RNA complex []. Rpp29 (3.1.26.5 from EC) catalyses the endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor. It interacts with the Rpp25 and Pop5 subunits. RNase P is a ubiquitous ribonucleoprotein enzyme primarily responsible for cleaving the 5' leader sequence during maturation of tRNAs in all three domains of life. In eubacteria, this enzyme is made up of two subunits: a large RNA (approximately 120 kDa) responsible for mediating catalysis, and a small protein cofactor (approximately 15 kDa) that modulates substrate recognition and is required for efficient in vivo catalysis. In contrast, multiple proteins are associated with eukaryotic and archaeal RNase P, and these proteins exhibit no recognizable homology to the conserved bacterial protein subunit. In reconstitution experiments with recombinantly expressed and purified protein subunits Mth Rpp29, a homologue of the Rpp29 protein subunit from eukaryotic RNase P, is an essential protein component of the archaeal holoenzyme []. In Saccharomyces cerevisiae (Baker's yeast), RNase P consists of 9 protein subunits (Pop1, Pop3-8, Rpr2 and Rpp1), while in humans there are 10 subunits (Rpp14, 20, 21, 25, 29, 30, 38, 40, hPop1, 5). RNase MRP (mitochondrial RNA processing) is an rRNA processing enzyme that cleaves a specific site within precursor rRNA to generate the mature 5'-end of 5.8S rRNA []. RNase MRP also cleaves primers for mitochondrial DNA replication and CLB2 mRNA. In yeast, RNase MRP possesses one putatively catalytic RNA and at least 9 protein subunits and is highly related to RNase P (Pop1, Pop3-Pop8, Rpp1, Snm1 and Rmp1).; GO: 0003723 RNA binding, 0004540 ribonuclease activity, 0006364 rRNA processing, 0006379 mRNA cleavage, 0008033 tRNA processing, 0000172 ribonuclease MRP complex, 0030677 ribonuclease P complex; PDB: 1V76_B 2ZAE_C 1OQK_A 2KI7_A 1TSF_A 1TS9_A 1PC0_A.
Probab=33.86 E-value=82 Score=21.48 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=23.5
Q ss_pred eEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccC
Q 038680 14 TKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAK 52 (161)
Q Consensus 14 r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~ 52 (161)
.+|.|+++.+.+. .+ .+.+..|||.+..
T Consensus 33 iVV~ETknt~~I~--t~---------~~~~~~IpK~~~v 60 (89)
T PF01868_consen 33 IVVDETKNTFVIV--TE---------DGKVKTIPKAGSV 60 (89)
T ss_dssp EEEEEETTEEEEE--ET---------TEEEEEEESTTEE
T ss_pred EEEEcccceEEEE--ec---------CCcEEEEecCCEE
Confidence 6899999999996 44 6789999999964
No 49
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=32.50 E-value=1.6e+02 Score=25.16 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=39.5
Q ss_pred EEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEE---EEecCCCCCCccCeEEEEEe
Q 038680 44 LVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTF---AIQDGPEAGQTVPHVHIHVL 107 (161)
Q Consensus 44 LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni---~~~~~~~ag~~v~HlH~HII 107 (161)
++..--|--++.+++..++.++..+=+++...|.+ .+.|++ .-|.|...|++.+|-|=++.
T Consensus 112 icf~Pnh~ltLp~m~~~~i~~vv~aw~~~~~~l~~---h~~y~yvQIFeNkGa~mGcSn~HpHgQ~w 175 (354)
T KOG2958|consen 112 ICFSPNHNLTLPLMDVVEIRDVVDAWKKLYNELGQ---HDSYKYVQIFENKGAAMGCSNPHPHGQAW 175 (354)
T ss_pred EEeCCccccccccCCHHHHHHHHHHHHHHHHHhcc---cCCcceeeeeccCCcccccCCCCccccee
Confidence 33333454567888888877766666655555543 445554 45667778999999997743
No 50
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=26.26 E-value=1.7e+02 Score=22.32 Aligned_cols=51 Identities=10% Similarity=0.249 Sum_probs=32.4
Q ss_pred ccccCCc-cCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCeEEEEEee
Q 038680 48 RREAKRF-ADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLP 108 (161)
Q Consensus 48 k~Hv~~l-~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~ag~~v~HlH~HIIP 108 (161)
.|+++++ ..++++.+.++-..+++..+.+......+ .....|+++-++++|
T Consensus 119 ~R~~s~~T~~vs~~~~~ki~~~i~~fRk~i~~i~~~~----------~~~~~Vy~lN~qlFP 170 (171)
T PF14394_consen 119 ERDFSGLTMSVSREDYEKIKKEIREFRKKIIAIAEED----------KEPDRVYQLNIQLFP 170 (171)
T ss_pred ccceeeeEEEeCHHHHHHHHHHHHHHHHHHHHHHhcC----------CCCCeEEEEEEEEec
Confidence 4556655 56677777777777776666665433221 124667888888888
No 51
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=25.47 E-value=74 Score=21.96 Aligned_cols=34 Identities=12% Similarity=0.051 Sum_probs=25.7
Q ss_pred eEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCC
Q 038680 14 TKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLT 58 (161)
Q Consensus 14 r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~ 58 (161)
.+|.|+++.+.+. .+ .+-+.+|||.+..-..+++
T Consensus 32 iVv~ET~nt~~I~--t~---------~~~~~~IpK~~~vF~f~l~ 65 (92)
T smart00538 32 IVVDETRNTLKIE--TK---------EGRVKTVPKDGAVFEFELP 65 (92)
T ss_pred EEEEeeeeEEEEE--eC---------CCcEEEEECCCeEEEEEEC
Confidence 6899999999996 23 4578999999966545554
No 52
>PRK13863 type IV secretion system T-DNA border endonuclease VirD2; Provisional
Probab=25.32 E-value=3.7e+02 Score=23.98 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=22.9
Q ss_pred ceEEEEecCCCCCCccCeEEEEEeecC---CCCC--CCC--c-hh-hhhhHHHHHHHhhh
Q 038680 84 STTFAIQDGPEAGQTVPHVHIHVLPRK---AGDF--EKN--D-EI-YDAIEVKEKELQQK 134 (161)
Q Consensus 84 ~~ni~~~~~~~ag~~v~HlH~HIIPR~---~~d~--~~~--~-~i-y~~l~~~~~~~~~~ 134 (161)
.|-+++|... .|=|+||+=+. .|.. ..+ . .+ |+.+...+++....
T Consensus 120 dYV~AlH~D~------dHPHVHLvVnrRd~~G~~~lri~~rk~dlNld~~Re~FAE~LRe 173 (446)
T PRK13863 120 NYLTAFHIDR------DHPHLHVVVNRRELLGHGWLKISRRHPQLNYDALRIKMAEISLR 173 (446)
T ss_pred eEEEEEecCC------CCCeEEEEEEeecCCCCceeeecCCCccccHHHHHHHHHHHHHh
Confidence 4556665433 68888877642 2221 111 1 21 56666666555554
No 53
>PF05840 Phage_GPA: Bacteriophage replication gene A protein (GPA); InterPro: IPR008766 Replication gene A proteins (also known as GpA) are found in bacteriophages and in bacteria as part of a suspected prophage. These proteins function as endonucleases during DNA replication [,,].; GO: 0006260 DNA replication
Probab=22.94 E-value=5.1e+02 Score=22.56 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=25.6
Q ss_pred CccCCCHHHHHHHHH-HHHHHHHHHHh-hcCCCceEEEEecCCCCCCccCeEEEEEe
Q 038680 53 RFADLTADETTDLWL-TAQKVGKQLES-YHKGSSTTFAIQDGPEAGQTVPHVHIHVL 107 (161)
Q Consensus 53 ~l~~L~~ee~~~l~~-~~~~v~~~l~~-~~~~~~~ni~~~~~~~ag~~v~HlH~HII 107 (161)
.+...++.+..++.. +-+++.+++.+ .+..-|+.++ -+.. .+.||+|+=++
T Consensus 204 kw~g~tP~daq~yL~~~W~~~Ra~l~r~~i~~yG~RV~--EPHh--DGTPHWH~Llf 256 (371)
T PF05840_consen 204 KWNGATPRDAQRYLNKVWARIRAALKRRGIRFYGFRVA--EPHH--DGTPHWHLLLF 256 (371)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEEee--cccC--CCCceeeeeee
Confidence 466677766544433 33444445543 1222233333 2222 44799998766
No 54
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=21.96 E-value=2.4e+02 Score=25.56 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=72.4
Q ss_pred ccCceEE---EEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceE
Q 038680 10 RSGLTKL---MRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTT 86 (161)
Q Consensus 10 ~~~~r~i---~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~n 86 (161)
|++.|+| ..++.|.-=.+++.|. .-|++|+..+|.+ -.++...+..|...+.. -+.|-
T Consensus 189 R~NhRiI~~~L~ge~W~fQYSPY~Yy-------nEHcIvl~~~H~P--MkI~~~tF~~Ll~fv~~----------fPhYF 249 (489)
T TIGR01239 189 RSNHRIIRVILEDEQWGFQFSPYAYF-------PEHSIVLKGKHEP--MEISKKTFERLLSFLGK----------FPHYF 249 (489)
T ss_pred ccCceEEEEeeCCccceeeccchhee-------cceeEEecCccCC--cEecHHHHHHHHHHHHh----------CCccc
Confidence 5566665 4667777666666665 9999999999986 34677777776666553 34555
Q ss_pred EEEecC-CCCCCcc-CeEEEE----EeecCCCCCCCC--chhhhhhHHHHHHHhhhcCCCcc----CcC-CCHHHHHHHH
Q 038680 87 FAIQDG-PEAGQTV-PHVHIH----VLPRKAGDFEKN--DEIYDAIEVKEKELQQKLDLDKE----RKD-RSLEEMNQEA 153 (161)
Q Consensus 87 i~~~~~-~~ag~~v-~HlH~H----IIPR~~~d~~~~--~~iy~~l~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~a 153 (161)
+|.|.. |..|-|+ .|=|++ .+|.-....+.. -.-|..+.. +. +.|+ |+. .+.+++.+.|
T Consensus 250 iGSNADLPIVGGSILsHdHyQgG~h~FpM~kA~i~~~f~~~~~p~V~a------gi--vkWPmSviRL~~~~~~~l~~~a 321 (489)
T TIGR01239 250 IGSNADLPIVGGSILSHDHYQGGRHDFPMARAEAEEVYELNDYPDVSA------GI--VKWPMSVLRLQGEDPGELAEAA 321 (489)
T ss_pred cccCCCCCcccccccccccccCCCcccccccCCcceEEecCCCCcceE------EE--EeccceEEEeccCCHHHHHHHH
Confidence 666653 4444444 888875 677644332210 001111110 00 1111 222 3567899999
Q ss_pred HHHHhhc
Q 038680 154 DQYRSLF 160 (161)
Q Consensus 154 ~~~~~~~ 160 (161)
+.|...|
T Consensus 322 ~~Il~~W 328 (489)
T TIGR01239 322 DHIFRTW 328 (489)
T ss_pred HHHHHHH
Confidence 9988877
No 55
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=21.67 E-value=1.1e+02 Score=29.16 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=40.0
Q ss_pred cEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCeEEEEEee-cCCCCC---C
Q 038680 40 HEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLP-RKAGDF---E 115 (161)
Q Consensus 40 ~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~ag~~v~HlH~HIIP-R~~~d~---~ 115 (161)
.+|+++-....- .++++.+.++ ...++..|. ++...|-++.|.. .+|+|+||+- +...+. .
T Consensus 68 vyH~ilSF~PgE----~pt~e~~~~I---~~~~~~~LG--~~~hQ~Vva~H~D------Tdh~HiHIviNrV~p~g~Ki~ 132 (746)
T PRK13878 68 TYHLIVSFRAGE----QPSADTLRAI---EERICAGLG--YGEHQRVSAVHHD------TDNLHIHIAINKIHPTRHTIH 132 (746)
T ss_pred eEEEEECCCCCC----CCCHHHHHHH---HHHHHHHhC--CCCceEEEEEECC------CCCceeEEEEeeecCCCCeec
Confidence 456555443321 1345544433 233333332 3444666777643 4899999885 322121 1
Q ss_pred CCchhhhhhHHHHHHHhhh
Q 038680 116 KNDEIYDAIEVKEKELQQK 134 (161)
Q Consensus 116 ~~~~iy~~l~~~~~~~~~~ 134 (161)
.+..-|..|.+.-++|-..
T Consensus 133 d~~~~yr~L~kicreLE~e 151 (746)
T PRK13878 133 EPYYAYRTLAELCTKLERD 151 (746)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 2223456666665666655
No 56
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=20.93 E-value=2.1e+02 Score=20.80 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=32.2
Q ss_pred chhhhhhHHHHHHHhhhcCCCcc--CcCCCHHHHHHHHHHHHh
Q 038680 118 DEIYDAIEVKEKELQQKLDLDKE--RKDRSLEEMNQEADQYRS 158 (161)
Q Consensus 118 ~~iy~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~ 158 (161)
+.+|+.....+..+..++++++. -...+++++..+.+.+..
T Consensus 20 t~i~GIG~~~A~~ic~~lgi~~~~~~~~Lt~~qi~~l~~~i~~ 62 (122)
T CHL00137 20 TYIYGIGLTSAKEILEKANIDPDIRTKDLTDEQISALREIIEE 62 (122)
T ss_pred cccccccHHHHHHHHHHcCcCcCcCcccCCHHHHHHHHHHHHH
Confidence 56788777777788888888887 357888999888888754
Done!