Query 038680
Match_columns 161
No_of_seqs 132 out of 1235
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 23:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fit_A FragIle histidine prote 100.0 2.7E-34 9.4E-39 214.7 12.9 135 12-160 12-146 (147)
2 3ksv_A Uncharacterized protein 100.0 1.1E-31 3.8E-36 201.8 14.4 131 3-160 16-146 (149)
3 3imi_A HIT family protein; str 100.0 5.9E-32 2E-36 202.4 12.0 134 3-161 14-147 (147)
4 3lb5_A HIT-like protein involv 100.0 1.4E-31 4.8E-36 203.7 12.7 129 3-160 33-161 (161)
5 3o0m_A HIT family protein; ssg 100.0 2.1E-31 7.1E-36 199.9 10.9 130 3-160 10-140 (149)
6 2eo4_A 150AA long hypothetical 100.0 1.6E-30 5.4E-35 194.7 12.8 132 3-160 4-136 (149)
7 1y23_A HIT, histidine triad pr 100.0 6.5E-31 2.2E-35 195.5 9.9 133 3-160 10-142 (145)
8 3l7x_A SMU.412C, putative HIT- 100.0 2.9E-30 9.7E-35 198.6 12.6 131 3-160 41-171 (173)
9 1ems_A Nitfhit, NIT-fragIle hi 100.0 1.2E-29 4.2E-34 217.9 12.5 133 12-160 308-440 (440)
10 3p0t_A Uncharacterized protein 100.0 4.3E-29 1.5E-33 184.7 13.6 124 3-160 10-134 (138)
11 3r6f_A HIT family protein; str 100.0 9.3E-30 3.2E-34 188.0 9.2 123 3-160 11-133 (135)
12 3ohe_A Histidine triad (HIT) p 100.0 2E-28 6.9E-33 181.8 14.2 122 12-160 12-133 (137)
13 3i24_A HIT family hydrolase; s 100.0 3.1E-28 1.1E-32 183.3 14.4 122 12-160 12-133 (149)
14 3ano_A AP-4-A phosphorylase; d 100.0 5.9E-29 2E-33 197.6 9.9 132 3-160 74-206 (218)
15 2oik_A Histidine triad (HIT) p 100.0 1.9E-28 6.6E-33 184.4 11.7 101 10-122 17-117 (154)
16 3n1s_A HIT-like protein HINT; 99.9 8.8E-28 3E-32 174.0 8.8 102 3-112 8-110 (119)
17 4egu_A Histidine triad (HIT) p 99.9 1E-27 3.4E-32 173.1 8.6 102 3-112 9-111 (119)
18 3nrd_A Histidine triad (HIT) p 99.9 1.2E-26 4.1E-31 171.8 14.6 121 12-160 14-135 (135)
19 3oj7_A Putative histidine tria 99.9 8.6E-27 2.9E-31 167.9 10.5 101 3-112 12-112 (117)
20 3o1c_A Histidine triad nucleot 99.9 7.3E-27 2.5E-31 170.6 8.9 102 3-112 20-121 (126)
21 3i4s_A Histidine triad protein 99.9 8.8E-26 3E-30 169.9 14.5 120 13-160 18-138 (149)
22 1xqu_A HIT family hydrolase; p 99.9 2.7E-25 9.3E-30 166.7 9.9 100 3-111 40-141 (147)
23 1gup_A Galactose-1-phosphate u 99.9 3.2E-23 1.1E-27 174.3 9.3 106 3-115 199-311 (348)
24 1z84_A Galactose-1-phosphate u 99.9 4.1E-23 1.4E-27 174.0 9.0 91 15-112 227-321 (351)
25 3sp4_A Aprataxin-like protein; 99.5 3.9E-15 1.3E-19 116.7 2.5 86 15-111 23-127 (204)
26 3bl9_A Scavenger mRNA-decappin 99.0 1.8E-09 6E-14 88.9 8.5 90 10-110 148-248 (301)
27 1vlr_A MRNA decapping enzyme; 98.9 2.7E-09 9.3E-14 89.1 8.5 90 10-110 195-295 (350)
28 1z84_A Galactose-1-phosphate u 98.5 7.9E-07 2.7E-11 74.6 10.6 91 19-109 86-192 (351)
29 1gup_A Galactose-1-phosphate u 96.2 0.017 5.7E-07 48.0 8.2 66 42-109 107-172 (348)
30 2pof_A CDP-diacylglycerol pyro 96.1 0.0073 2.5E-07 47.7 5.0 85 12-107 30-120 (227)
31 3vg8_G Hypothetical protein TT 77.7 3.1 0.00011 28.9 4.2 26 82-108 76-101 (116)
32 1wgy_A RAP guanine nucleotide 42.6 3.9 0.00013 28.2 -0.6 42 10-60 57-98 (104)
33 2dhz_A RAP guanine nucleotide 38.2 4.8 0.00016 28.4 -0.7 42 10-60 63-104 (120)
34 3g5g_A Regulatory protein; tra 32.6 48 0.0016 21.5 3.6 22 99-120 4-25 (99)
35 1omh_A TRWC protein; protein-D 29.7 99 0.0034 24.7 5.7 20 59-78 104-123 (293)
36 3u5c_S 40S ribosomal protein S 28.3 1.2E+02 0.004 21.8 5.3 40 118-157 33-74 (146)
37 3r8n_M 30S ribosomal protein S 25.6 1.1E+02 0.0036 21.1 4.5 39 118-156 19-59 (114)
38 2nyx_A Probable transcriptiona 25.1 34 0.0012 23.9 2.0 25 54-78 128-152 (168)
39 2jm6_A NOXA; apoptosis, BCL-2, 24.9 19 0.00065 18.4 0.4 13 147-159 2-14 (27)
40 2vqe_M 30S ribosomal protein S 22.7 85 0.0029 22.0 3.6 41 118-158 20-62 (126)
41 2bf9_A Pancreatic hormone; tur 22.2 1.1E+02 0.0036 16.9 3.1 21 138-158 6-26 (36)
No 1
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=100.00 E-value=2.7e-34 Score=214.75 Aligned_cols=135 Identities=48% Similarity=0.739 Sum_probs=110.5
Q ss_pred CceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEec
Q 038680 12 GLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQD 91 (161)
Q Consensus 12 ~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~ 91 (161)
+.++|||+++++||+|.+|.+ |||+||+||+|+.++.+|+++++.+|+.+++++++++++.+++++||+++|+
T Consensus 12 ~~~iv~e~~~~~a~~d~~p~~-------pgh~LViPk~h~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~ 84 (147)
T 1fit_A 12 PSVVFLKTELSFALVNRKPVV-------PGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQD 84 (147)
T ss_dssp GGGEEEECSSEEEEECSSCSS-------TTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred CcEEEEECCCEEEEECCCCCC-------CcEEEEEEccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 568999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 92 GPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 92 ~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
|+.+||+|+|+|+|||||+.+|..+++++|+.+..... .+..++.+++|||+++|++||+.|
T Consensus 85 g~~agq~v~HlH~HiiPr~~~d~~~~~~v~~~~~~~~~-------~~~~~~~~~~~e~~~~a~~lr~~l 146 (147)
T 1fit_A 85 GPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDK-------EDFPASWRSEEEMAAEAAALRVYF 146 (147)
T ss_dssp SGGGTCCSSSCCEEEEEECTTC---------------------------CCCCCHHHHHHHHHHHHHTT
T ss_pred CCccCCCccEEEEEEECCcCCCCCCcchHHHHhhhccc-------ccccccCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998752210 012456789999999999999876
No 2
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=99.98 E-value=1.1e-31 Score=201.78 Aligned_cols=131 Identities=19% Similarity=0.328 Sum_probs=115.0
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKG 82 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~ 82 (161)
|+++ ..+...++||||++++||+|.+|.+ |||+||+||+|+.++.+|+++++.+|+.++++++++++..+++
T Consensus 16 c~Ii-~geip~~iV~ed~~~~af~d~~P~~-------pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~ 87 (149)
T 3ksv_A 16 CKII-KGDIPCAKVAETSKALAFMDINPLS-------RGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGPDGS 87 (149)
T ss_dssp HHHH-HTSSCCCEEEECSSEEEEECSSCSS-------TTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred HHHH-cCCCCccEEEECCCEEEEECCCCCC-------CCEEEEEeChhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 5544 4445669999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 83 SSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 83 ~~~ni~~~~~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
++||+++|+|+.+||+|+|+|+|||||+.+|..+. ..| .....+++++++.+++||+.|
T Consensus 88 ~g~ni~~n~g~~aGq~v~HlHiHiiPR~~~d~g~~-~~w------------------~~~~~~~~~l~~~~~~lr~~l 146 (149)
T 3ksv_A 88 MQYNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLK-IGW------------------DTVKVASDELAEDAKRYSEAI 146 (149)
T ss_dssp CEEEEEECCSTTTTCCSSSCCEEEEEECCTTSSCC-CCC------------------CCCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcccCCCCCEEEEEEEecccCCCCcc-cCC------------------CCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864332 122 223467999999999999875
No 3
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=99.97 E-value=5.9e-32 Score=202.42 Aligned_cols=134 Identities=17% Similarity=0.286 Sum_probs=116.2
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKG 82 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~ 82 (161)
|+.+- .+...++|||+++++||+|.+|.+ |||+||+||+|+.++.+|+++++.+|+.+++++++++++.+++
T Consensus 14 C~i~~-~e~~~~iV~e~~~~~a~~d~~p~~-------pgh~lViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~ 85 (147)
T 3imi_A 14 CKIID-GQILCSKVYEDEHVLAFLDISQVT-------KGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNP 85 (147)
T ss_dssp HHHHT-TSSCCCEEEECSSEEEEECTTCSS-------TTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHHHHCC
T ss_pred ccccc-CCCcCCEEEECCCEEEEEcCCCCC-------CcEEEEEEeeccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55443 334468999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhcC
Q 038680 83 SSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLFL 161 (161)
Q Consensus 83 ~~~ni~~~~~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 161 (161)
++||+++|+|+.+||+|+|+|+|||||+.+|..+ ..+|.. .+...+++++++.+++||+.+.
T Consensus 86 ~~~ni~~n~g~~aGq~v~HlHiHiiPR~~~~~~~-~~~~~~----------------~~~~~~~~~~~~~~~~ir~~l~ 147 (147)
T 3imi_A 86 VGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGF-GAVWKS----------------HQNEYTMENLQNIASTIANSVK 147 (147)
T ss_dssp SEEEEEEEESGGGTCCSSSCCEEEEEECSTTCSE-EEEECC----------------CGGGCCHHHHHHHHHHHHHHCC
T ss_pred CCEEEEEeCCcccCCCcCEEEEEEeCCccCCCCc-eeeccc----------------cCCCCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999976554 334532 1234579999999999998763
No 4
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=99.97 E-value=1.4e-31 Score=203.65 Aligned_cols=129 Identities=18% Similarity=0.235 Sum_probs=112.8
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKG 82 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~ 82 (161)
|+.+- .+...++|||+++|+||+|.+|.+ |||+|||||+|+.++.+|+++++.+|+.+++++++++++.+++
T Consensus 33 C~i~~-~e~p~~iV~e~e~~~af~d~~P~~-------pgH~LViPk~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~ 104 (161)
T 3lb5_A 33 AKLIR-NEIPSVRVYEDDDVIAFMDIMPQA-------PGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQA 104 (161)
T ss_dssp HHHHT-TSSCCCEEEECSSEEEEECSSCSS-------TTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccc-CCCCccEEEECCCEEEEECCCcCC-------CcEEEEEEeeccchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 65443 344569999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 83 SSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 83 ~~~ni~~~~~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
++||+++|+|+.+||+|+|+|+|||||+.+|..+.. .+...+++++++.+++||+.|
T Consensus 105 ~g~ni~~n~g~~aGq~V~HlHiHiiPR~~~d~~~~~---------------------~~~~~~~~~l~~~~~~ir~~L 161 (161)
T 3lb5_A 105 DGITVMQFNEAASQQTVYHLHFHIIPRMEGIELTPH---------------------NNIITPTEILEENAKKIRAAL 161 (161)
T ss_dssp SEEEEEEEESGGGTCCSCSCCEEEEEECTTCCC---------------------------CCCHHHHHHHHHHHHHHC
T ss_pred CCEEEEEecCcccCCCCCEEEEEEEcccCCCCCCcC---------------------cccCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998865431 112357999999999999864
No 5
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=99.97 E-value=2.1e-31 Score=199.85 Aligned_cols=130 Identities=20% Similarity=0.305 Sum_probs=109.5
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhh-cC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESY-HK 81 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~-~~ 81 (161)
|+.+- .+...++|||+++|+||+|.+|.+ |||+||+||+|+.++.+|+++++.+|+.+++++++++++. ++
T Consensus 10 C~i~~-~e~~~~iv~e~~~~~af~d~~p~~-------pgh~lViPk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~ 81 (149)
T 3o0m_A 10 CAIVS-GDAPAIRIYEDENFLGILDIRPFT-------RGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARESGLH 81 (149)
T ss_dssp HHHHT-TSSCCCEEEECSSEEEEECSSCSS-------TTCEEEEESSCCCSTTTSCHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred Ccccc-CCCCCCEEEECCCEEEEEcCCCCC-------CCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 55433 334469999999999999999988 9999999999999999999999999999999999999998 89
Q ss_pred CCceEEEEecCCCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 82 GSSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 82 ~~~~ni~~~~~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
+++||+++|+|+.+||+|+|+|+|||||+.+|..+....|. ...++++++.|++||+.|
T Consensus 82 ~~~~ni~~n~g~~aGq~v~HlHiHiiPR~~~d~~~~~~~~~--------------------~~~~~~l~~~a~~lr~~l 140 (149)
T 3o0m_A 82 ADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKGMV--------------------MRRDPDREESGRLLRAAL 140 (149)
T ss_dssp CSEEEEECCCSGGGTCCSSSCCEEEEEECTTCCCCC--------------------------CCCTTHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCCCCccceEEEEEECCccCCCcccccCcc--------------------cCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987544322211 113477888888888765
No 6
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=99.97 E-value=1.6e-30 Score=194.70 Aligned_cols=132 Identities=18% Similarity=0.255 Sum_probs=114.1
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKG 82 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~ 82 (161)
|+.+ ..+...++|||+++++||+|.+|.+ |||+||+||+|+.++.+|+++++.+|+.+++++++++++.+++
T Consensus 4 C~i~-~~e~~~~iv~e~~~~~a~~d~~p~~-------pgh~lViPk~H~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~ 75 (149)
T 2eo4_A 4 CSII-NRELEGYFVYEDEKFAAILDKYPVS-------LGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKA 75 (149)
T ss_dssp HHHH-TTSSCCCEEEECSSEEEEECSSCSS-------TTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccc-cCCCCccEEEECCCEEEEECCCCCC-------CCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6543 3344569999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCccCeEEEEEeecCCCCC-CCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 83 SSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDF-EKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 83 ~~~ni~~~~~~~ag~~v~HlH~HIIPR~~~d~-~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
++||+++|+|+.+||+|+|+|+|||||+.+|. .++ ..|. +.+. .+++++++.+++||+.|
T Consensus 76 ~~~ni~~n~g~~~gq~v~HlHiHviPr~~~d~~~~~-~~~~----------------~~~~-~~~~~~~~~~~~lr~~l 136 (149)
T 2eo4_A 76 DGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYPDIF-KSFK----------------PRKE-QEKEYYELLQKIIRESI 136 (149)
T ss_dssp SEEEEECCCSGGGTCCSCSCCEEEEEECSSCCCTTS-CCCC----------------TTSC-CCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcCCCCCcCEEEEEEECCcCCCCcccc-cccC----------------CCCC-CCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998875 222 1222 1133 67999999999999865
No 7
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=99.97 E-value=6.5e-31 Score=195.54 Aligned_cols=133 Identities=16% Similarity=0.269 Sum_probs=114.0
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKG 82 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~ 82 (161)
|+.. ..+...++|||+++++||+|.+|.+ |||+||+||+|+.++.+|+++++.+|+.+++++++++++.+++
T Consensus 10 C~i~-~~e~~~~iv~e~~~~~a~~~~~p~~-------pgh~LViPk~h~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~ 81 (145)
T 1y23_A 10 CKII-AGDIPSAKVYEDEHVLAFLDISQVT-------KGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEP 81 (145)
T ss_dssp HHHH-HTSSCCCEEEECSSEEEEECTTCSS-------TTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCC
T ss_pred Cccc-cCCCCCCEEEECCCEEEEECCCCCC-------CCeEEEEEhhhhhhHHhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5543 2233459999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 83 SSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 83 ~~~ni~~~~~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
++||+++|+|+.+||+|+|+|+|||||+.+|..++ ..|. +.....++++|++.+++||+.|
T Consensus 82 ~~~ni~~n~g~~~g~~v~HlH~HiiPr~~~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~lr~~l 142 (145)
T 1y23_A 82 IGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFG-AVWK----------------THADDYKPEDLQNISSSIAKRL 142 (145)
T ss_dssp SEEEEEEEESGGGTCCSSSCCEEEEEECSTTCSEE-EEEC----------------CCGGGSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCcCCCCCcCEEEEEEEccccCCCCcc-cccC----------------CCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998864332 2232 1112367999999999999876
No 8
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=99.97 E-value=2.9e-30 Score=198.64 Aligned_cols=131 Identities=21% Similarity=0.308 Sum_probs=112.9
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKG 82 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~ 82 (161)
|+.+- .+...++|||++.|+||+|.+|.+ |||+|||||+|+.++.+|+++++.+|+.+++++++++++.+++
T Consensus 41 C~Ii~-~e~p~~iV~e~e~~~afld~~P~~-------pgH~LVIPkrHv~~l~dL~~ee~~~L~~~~~~v~~~l~~~~~~ 112 (173)
T 3l7x_A 41 CKIVA-GDIPSSKVYEDEDVLAFLDISQAT-------KGHTLVIPKEHVRNALEMTQTQAANLFARIPKIARALQKATKA 112 (173)
T ss_dssp HHHHH-TSSCCCEEEECSSEEEEECTTCSS-------TTCEEEEESSCCSCGGGCCHHHHHHHHHTHHHHHHHHHHHHTC
T ss_pred ccccc-CCCCceEEEECCCEEEEEcCCCCC-------CcEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55443 333468999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 83 SSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 83 ~~~ni~~~~~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
++||+++|+|+.+||+|+|+|+|||||+.+|..+ ...|.. ...+.+++++.+++||+.+
T Consensus 113 ~g~ni~~n~g~~aGq~V~HlHiHiIPR~~~d~gf-~~~~~~------------------~~~~~~~l~~~~~~ir~~L 171 (173)
T 3l7x_A 113 DGLNIINNNEETAGQTVFHAHVHLVPRFADSDEF-DIRFVQ------------------HEPDFTRLGQLAEDIQKEI 171 (173)
T ss_dssp SEEEEEECCSGGGTCCSCSCCEEEEEECC-CCSC-CCCCCC------------------CCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcccCCCcCEEEEEEEecccCCCCc-ccccCC------------------CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999876544 233432 1235799999999999876
No 9
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.96 E-value=1.2e-29 Score=217.85 Aligned_cols=133 Identities=47% Similarity=0.711 Sum_probs=109.7
Q ss_pred CceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEec
Q 038680 12 GLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQD 91 (161)
Q Consensus 12 ~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~ 91 (161)
..++|||+++++||+|.+|.+ |||+||+||+|+.++.+|+++++.+|+.+++++++++++.+++++||+++|+
T Consensus 308 ~~~iv~e~~~~~a~~~~~p~~-------pgh~lviPk~h~~~~~~l~~~~~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~ 380 (440)
T 1ems_A 308 ADHIFYSTPHSFVFVNLKPVT-------DGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQD 380 (440)
T ss_dssp GGGEEEECSSEEEEECSSCSS-------TTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred CceEEEECCCEEEEEcCCcCC-------CCeEEEEEccccCChhHCCHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEec
Confidence 457999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 92 GPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 92 ~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
|+.+||+|+|+|+|||||+.+|..++ .+|+.+....+ ++.++.+++|||+++|++||+.|
T Consensus 381 g~~~gq~v~HlH~Hiipr~~~d~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~ 440 (440)
T 1ems_A 381 GKDAGQTVPHVHIHILPRRAGDFGDN-EIYQKLASHDK--------EPERKPRSNEQMAEEAVVYRNLM 440 (440)
T ss_dssp SGGGTCCSSSCCEEEEEECSSCC----------------------------CCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCccEEEEEEeCCCCCCCCcc-hhHHHhhhccc--------ccccCCCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999998877 88988764321 23466789999999999999875
No 10
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=99.96 E-value=4.3e-29 Score=184.71 Aligned_cols=124 Identities=20% Similarity=0.313 Sum_probs=106.9
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKG 82 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~ 82 (161)
|+..- .+...++|||+++++||+|.+|.+ |||+||+||+|+.++.+|+++++.+|+.+++++++++++.+++
T Consensus 10 C~i~~-~e~p~~iV~e~~~~~af~d~~P~~-------pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~ 81 (138)
T 3p0t_A 10 TKIIN-RELPGRFVYEDDDVVAFLTIEPMT-------QGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRT 81 (138)
T ss_dssp HHHHT-TSSCCCEEEECSSEEEEECSSCSS-------TTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhc-CCCCcCEEEeCCCEEEEecCCCCC-------CcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 65443 344568999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCccCeEEEEEeecCCCC-CCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 83 SSTTFAIQDGPEAGQTVPHVHIHVLPRKAGD-FEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 83 ~~~ni~~~~~~~ag~~v~HlH~HIIPR~~~d-~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
+++|+.. +||+|+|+|+|||||+.+| ..+. | .....+++++++.+++||+.|
T Consensus 82 ~~~n~~~-----~gq~v~HlH~HiiPr~~~d~~~~~---~------------------~~~~~~~~~l~~~~~~l~~~l 134 (138)
T 3p0t_A 82 ERSGLII-----AGLEVPHLHVHVFPTRSLSDFGFA---N------------------VDRNPSPESLDEAQAKIKAAL 134 (138)
T ss_dssp SEEEEEE-----CCSSCSSCCEEEEEESCGGGSSST---T------------------CCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEE-----CCcccCEEEEEEeccccCCCCccc---C------------------CCCCCCHHHHHHHHHHHHHHH
Confidence 9999874 7999999999999999874 4332 1 123457999999999999875
No 11
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=99.96 E-value=9.3e-30 Score=188.00 Aligned_cols=123 Identities=20% Similarity=0.239 Sum_probs=105.0
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKG 82 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~ 82 (161)
|+.+. ...++|||+++++||+|.+|.+ |||+||+||+|+.++.+|+++++.+|+.+++++++++ ++
T Consensus 11 C~i~~---~~~~iv~e~~~~~af~d~~p~~-------pgh~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~~----~~ 76 (135)
T 3r6f_A 11 CTLYR---KGANIIYETDRLFALIDRYPLS-------KGHFLVIPKAHHPYLHNYKPEELSGVLDTIRHLVQKF----GF 76 (135)
T ss_dssp HHHHH---HCCSCCEECSSEEEEECSSCSS-------TTCEEEEESSCCSSGGGSCGGGGTTHHHHHHHHHHHH----TC
T ss_pred ccccc---CCceEEEECCCEEEEECCCCCC-------CCeEEEEEhhHhCCHhHCCHHHHHHHHHHHHHHHHHh----CC
Confidence 55544 4668999999999999999988 9999999999999999999999999999998887764 67
Q ss_pred CceEEEEecCCCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 83 SSTTFAIQDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 83 ~~~ni~~~~~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
++||+++|+|+ ||+|+|+|+|||||+.+|..+. ..|. ....+++++++.+++||+.+
T Consensus 77 ~~~ni~~n~g~--gq~v~HlH~HiiPR~~~d~g~~-~~~~------------------~~~~~~~~l~~~~~~ir~~l 133 (135)
T 3r6f_A 77 ERYNILQNNGN--HQEVFHVHFHVIPFVSADERLM-INWK------------------AKSVSDKEYSEMVEEARLRV 133 (135)
T ss_dssp CSEEEECCSSS--SCSSSSCCEEEEECCBTTBSCC-CCCC------------------CCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCC--CCCccEEEEEEeccccCCCCce-ecCC------------------CCCCCHHHHHHHHHHHHHHh
Confidence 89999999999 9999999999999998764432 1222 22457999999999999875
No 12
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=99.96 E-value=2e-28 Score=181.78 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=111.0
Q ss_pred CceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEec
Q 038680 12 GLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQD 91 (161)
Q Consensus 12 ~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~ 91 (161)
..-+|++++.++++++..|.+ |||+||+||+|+.++.||++++..+++..+.++++++++.++++++|++
T Consensus 12 d~~~v~~~~~~~v~l~~~p~~-------pGh~lV~~k~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~--- 81 (137)
T 3ohe_A 12 DTHKLGESRLCDVLLMNDNTW-------PWVILVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA--- 81 (137)
T ss_dssp HEEEEEECSSEEEEEESCTTS-------CEEEEEESCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE---
T ss_pred ccEEEEECCcEEEEEcCCCCC-------CEEEEEecccccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe---
Confidence 357899999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 92 GPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 92 ~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
.+||+|+|+|+|||||+.+|..++..+|+. ..+...+++|+++.+++||+.+
T Consensus 82 --~aGq~V~HlH~HviPR~~~D~~~p~~vw~~---------------~~~~~~~~eel~~~~~~ir~~L 133 (137)
T 3ohe_A 82 --ALGNMVPQLHLHHIVRYQGDPAWPGPVWGK---------------QPPVPYTEEQQASVKAKLQPLL 133 (137)
T ss_dssp --ECCSSCCSCCEEEEEECTTSTTTTSCCTTS---------------SCCCCCCHHHHHHHHHHHHHHH
T ss_pred --eccCcCCEEEEEEeCCCCCCCCCCcccccC---------------CCCCCCCHHHHHHHHHHHHHHH
Confidence 489999999999999999998887777764 1234568999999999999865
No 13
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=99.96 E-value=3.1e-28 Score=183.25 Aligned_cols=122 Identities=19% Similarity=0.185 Sum_probs=111.3
Q ss_pred CceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEec
Q 038680 12 GLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQD 91 (161)
Q Consensus 12 ~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~ 91 (161)
...+|++++.++||++..|.+ |||+||+||+|+.++.||++++..+++..++.+++++++.++++++|++.
T Consensus 12 d~~~v~~~~~~~v~L~~~p~~-------pGh~LV~pk~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~-- 82 (149)
T 3i24_A 12 DCIVLGNLPLCKVLLIKEDIG-------PWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGA-- 82 (149)
T ss_dssp HEEEEEECSSEEEEEECBSST-------TEEEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE--
T ss_pred CCEEEEECCCEEEEEcCCCCC-------CEEEEEeCccccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhh--
Confidence 356899999999999999988 99999999999999999999999999999999999999999999999994
Q ss_pred CCCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 92 GPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 92 ~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
+||+|+|+|+|||||+.+|..|+..+|+. +.+...+++|+++.|++||+.+
T Consensus 83 ---aGq~V~HlH~HvIPR~~~D~~~~~~vw~~---------------~~~~~~~~eel~~~a~kIr~~L 133 (149)
T 3i24_A 83 ---LGNLVPQLHIHHIARFTTDVAWPGPVWGN---------------TTGVIRAQSSQTQLVDLLRDKL 133 (149)
T ss_dssp ---CCSSCCSCCEEEEEECTTSTTTTSCSTTC---------------SCCCBCCHHHHHHHHHHHHHHH
T ss_pred ---hhCCCCEEEEEEeCCccCCCCCCcceecC---------------CCCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999998888788864 2334567999999999999876
No 14
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=99.96 E-value=5.9e-29 Score=197.60 Aligned_cols=132 Identities=20% Similarity=0.259 Sum_probs=113.0
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKG 82 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~ 82 (161)
|..........++|||+++++||+|.+|++ +||+|||||+|+.++.+|+++++.+|+.+++.+.+++++.+++
T Consensus 74 C~i~~~e~~~~~iV~edd~~~afld~~P~~-------pGH~LVIPkrHv~~l~dL~~ee~~~L~~l~~~v~~~l~~~~~~ 146 (218)
T 3ano_A 74 TEIPQLSDEEGLVVARGKLVYAVLNLYPYN-------PGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVSRP 146 (218)
T ss_dssp HHGGGSCHHHHTEEEECSSEEEEECSSCSS-------TTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cccccCCCCCceEEEECCcEEEEEccCCCC-------CcEEEEEechhhCChhhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 655443235668999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCcc-CeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 83 SSTTFAIQDGPEAGQTV-PHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 83 ~~~ni~~~~~~~ag~~v-~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
++||+++|+|+.+||+| +|+|+|||||+.+|..+. .+|+.. ..+++++++.+++||+.|
T Consensus 147 ~g~ni~~n~G~~aGq~V~~HlHiHIIPR~~gd~~f~-~v~g~~------------------~~~~~~l~~~~~~Lr~al 206 (218)
T 3ano_A 147 HGFNVGLNLGTSAGGSLAEHLHVHVVPRWGGDANFI-TIIGGS------------------KVIPQLLRDTRRLLATEW 206 (218)
T ss_dssp SEEEEEEEESGGGTCTTTTSCCEEEEEECTTGGGCC-CCC-----------------------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcccCCcccCEEEEEEEcccCCCCCcc-cccccc------------------cCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999886543 344321 134688999999998765
No 15
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=99.95 E-value=1.9e-28 Score=184.37 Aligned_cols=101 Identities=22% Similarity=0.261 Sum_probs=93.5
Q ss_pred ccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEE
Q 038680 10 RSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAI 89 (161)
Q Consensus 10 ~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~ 89 (161)
....++|||+++++||+|.+|.+ |||+||+||+|+.++.+|+++++.+++.+++++++++++.++++++|++.
T Consensus 17 ~~~~~iv~e~~~~~a~~d~~p~~-------pgh~LViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~~~~~g~ni~~ 89 (154)
T 2oik_A 17 TAGGEILWQDALCRVVHVENQDY-------PGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKINLAS 89 (154)
T ss_dssp SCCSEEEEECSSEEEEECCCTTC-------TTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred CCCCeEEEECCcEEEEEcCCCCC-------CeEEEEEecCCcCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEhHH
Confidence 44679999999999999999988 99999999999999999999999999999999999999999999999983
Q ss_pred ecCCCCCCccCeEEEEEeecCCCCCCCCchhhh
Q 038680 90 QDGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYD 122 (161)
Q Consensus 90 ~~~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~ 122 (161)
+||+|+|+|+|||||+.+|..++..+|.
T Consensus 90 -----~gq~v~HlHiHiiPr~~~d~~~~~~~w~ 117 (154)
T 2oik_A 90 -----LGNMTPHVHWHVIPRFKRDRHFPNSVWG 117 (154)
T ss_dssp -----CCSSSCSCEEEEEEECTTSSSTTSCTTS
T ss_pred -----hCCCCCEEEEEEeCCCCCCCCCCccccC
Confidence 7899999999999999998777666665
No 16
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=99.95 E-value=8.8e-28 Score=173.97 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=86.2
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHh-hcC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLES-YHK 81 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~-~~~ 81 (161)
|+.+- .+...++||||++++||+|.+|.+ |||+||+||+|++++.+|++++..+++.+++.+.+.+++ .++
T Consensus 8 C~I~~-ge~~~~iv~ede~~~af~d~~P~~-------pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~ 79 (119)
T 3n1s_A 8 SKIIR-REIPSDIVYQDDLVTAFRDISPQA-------PTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIA 79 (119)
T ss_dssp HHHHT-TSSCCCEEEECSSEEEEECSSCSS-------SEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCT
T ss_pred hhhhc-CCCcCCEEEECCCEEEEECCCCCC-------CCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55433 344568999999999999999998 999999999999999999999777776666555555544 578
Q ss_pred CCceEEEEecCCCCCCccCeEEEEEeecCCC
Q 038680 82 GSSTTFAIQDGPEAGQTVPHVHIHVLPRKAG 112 (161)
Q Consensus 82 ~~~~ni~~~~~~~ag~~v~HlH~HIIPR~~~ 112 (161)
+++||+++|+|+.+||+|+|+|+|||||+.-
T Consensus 80 ~~g~ni~~n~g~~agq~V~HlH~Hiipr~~~ 110 (119)
T 3n1s_A 80 EDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110 (119)
T ss_dssp TTCEEEEEEEHHHHTCCSSSCCEEEEESSCC
T ss_pred CCCeEEEEeCCCCcCCCcCEEEEEEeCCccc
Confidence 8999999999999999999999999999863
No 17
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=99.95 E-value=1e-27 Score=173.11 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=85.0
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhh-cC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESY-HK 81 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~-~~ 81 (161)
|+.+- .+...++||||++++||+|.+|.+ |||+||+||+|+.++.+|+++++.+++.+++.+.+.++.. ++
T Consensus 9 C~i~~-~e~~~~iv~e~e~~~af~d~~P~~-------pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~~~~~~~~~~~~ 80 (119)
T 4egu_A 9 CKIAN-GEIPSTKVYEDDRVLAFNDLNPVA-------PYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEKGFD 80 (119)
T ss_dssp HHHHT-TSSCCCEEEECSSEEEEECSSCSS-------SEEEEEEESSCCSSGGGSCGGGTHHHHHHHHHHHHHHHHHTHH
T ss_pred eeccc-CCCCCCEEEECCCEEEEECCCCCC-------CceEEEEechhhCCHhHCCHhHHHHHHHHHHHHHHHHHHhCCC
Confidence 55433 334569999999999999999988 9999999999999999999998777777776444444332 34
Q ss_pred CCceEEEEecCCCCCCccCeEEEEEeecCCC
Q 038680 82 GSSTTFAIQDGPEAGQTVPHVHIHVLPRKAG 112 (161)
Q Consensus 82 ~~~~ni~~~~~~~ag~~v~HlH~HIIPR~~~ 112 (161)
+++||+++|+|+.+||+|+|+|+|||||+..
T Consensus 81 ~~~~ni~~n~g~~agq~v~HlH~Hiip~~~~ 111 (119)
T 4egu_A 81 QTGFRVINNCGSDGGQEVKHLHYHILAGKKL 111 (119)
T ss_dssp HHCEEEEEEETTTTTCCSCSCCEEEEESSCC
T ss_pred CCCEEEEEeCCCCCCCCcCEEEEEEeCCccc
Confidence 7799999999999999999999999999863
No 18
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=99.95 E-value=1.2e-26 Score=171.75 Aligned_cols=121 Identities=15% Similarity=0.131 Sum_probs=108.2
Q ss_pred CceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEec-cccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEe
Q 038680 12 GLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSR-REAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQ 90 (161)
Q Consensus 12 ~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk-~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~ 90 (161)
...+|++++.++++++..|.. || ++|||| +|+.++.||++++..+++..++++++++++.++++++|++
T Consensus 14 ~~~~v~~~~~~~v~l~~~~~~-------p~-~lvVpkr~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-- 83 (135)
T 3nrd_A 14 DGIPIGTLGLCQMRLMNDRRW-------PW-LILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-- 83 (135)
T ss_dssp HEEEEEECSSEEEEEESCTTS-------CE-EEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE--
T ss_pred CCEEEEECCcEEEEEcCCCCC-------CE-EEEEcCccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe--
Confidence 356899999999999999987 85 577888 7999999999999999999999999999999999999998
Q ss_pred cCCCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 91 DGPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 91 ~~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
.+||+|+|+|+|||||+.+|..|+..+|+. ..+...+++|+++.+++||+.+
T Consensus 84 ---~aGq~V~HlH~HviPR~~~D~~~~~~~~~~---------------~~~~~~~~~el~~~a~~i~~~L 135 (135)
T 3nrd_A 84 ---ALGNIVRQLHVHVIARREGDPNWPGPVWGF---------------GKAEPWPEEEHRTFAARIMENL 135 (135)
T ss_dssp ---ECCSSCCSCCEEEEEECTTSTTTTSCSTTC---------------SCCCCCCHHHHHHHHHHHHHHC
T ss_pred ---eccCCCCEEEEEEecCCCCCCCCCCcccCC---------------CCCCCCCHHHHHHHHHHHHhhC
Confidence 489999999999999999999988888864 2344678999999999999864
No 19
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=99.94 E-value=8.6e-27 Score=167.88 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=86.4
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKG 82 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~ 82 (161)
|+..- .+...++||||++++||+|.+|++ |||+||+||+|+.++.+|++++..+++.+++.+.+.+++.++
T Consensus 12 C~i~~-~e~~~~iv~e~~~~~af~d~~P~~-------pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~- 82 (117)
T 3oj7_A 12 CKIAQ-KQIPSTIVYEDDEIFAFKDINPIA-------PIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKECP- 82 (117)
T ss_dssp HHHHT-TSSCCCEEEECSSEEEEECSSCSS-------SEEEEEEESSCCCSGGGCCTTTHHHHHHHHHHHHHHHHHHCT-
T ss_pred ccccc-CCCCCCEEEECCcEEEEECCCCCC-------CceEEEEechHhCCHHHCCHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 55433 334579999999999999999988 999999999999999999999888888887765555555454
Q ss_pred CceEEEEecCCCCCCccCeEEEEEeecCCC
Q 038680 83 SSTTFAIQDGPEAGQTVPHVHIHVLPRKAG 112 (161)
Q Consensus 83 ~~~ni~~~~~~~ag~~v~HlH~HIIPR~~~ 112 (161)
++||+++|+|+.+||+|+|+|+|||||..-
T Consensus 83 ~g~ni~~n~g~~agq~v~H~H~Hiipr~~~ 112 (117)
T 3oj7_A 83 EGYRVVNNIGEDAGQTVKHIHFHILGGKKL 112 (117)
T ss_dssp TCEEEECCCSTTTTCCSSSCCEEEEESSCC
T ss_pred CCeEEEEcCCCCCCeeeeEEEEEEeCCCCC
Confidence 499999999999999999999999999853
No 20
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=99.94 E-value=7.3e-27 Score=170.57 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=85.1
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKG 82 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~ 82 (161)
|+.+- .+...++||||++++||+|.+|.+ |||+||+||+|+.++.+|++++...++.+++.+.+.++....+
T Consensus 20 C~i~~-~e~~~~iv~e~e~~~af~d~~P~~-------pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~~ 91 (126)
T 3o1c_A 20 GKIIR-KEIPAKIIFEDDQALAFHDISPQA-------PTHFLVIPKKHISQISAAEDADESLLGHLMIVGKKCAADLGLK 91 (126)
T ss_dssp HHHHH-TSSCCCEEEECSSEEEEECSSCSS-------SEEEEEEESSCCCCGGGCCGGGHHHHHHHHHHHHHHHHHTTCT
T ss_pred chhhc-CCCcCCEEEECCCEEEEECCCCCC-------CceEEEEechHhchHhhCchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 55443 233469999999999999999998 9999999999999999999998777777765444445444456
Q ss_pred CceEEEEecCCCCCCccCeEEEEEeecCCC
Q 038680 83 SSTTFAIQDGPEAGQTVPHVHIHVLPRKAG 112 (161)
Q Consensus 83 ~~~ni~~~~~~~ag~~v~HlH~HIIPR~~~ 112 (161)
++||+++|+|+.+||+|+|+|+|||||..-
T Consensus 92 ~g~ni~~n~g~~agq~v~HlH~Hiipr~~~ 121 (126)
T 3o1c_A 92 KGYRMVVNEGSDGGQSVYHVHLHVLGGRQM 121 (126)
T ss_dssp TCEEEECCCHHHHTCCSSSCCEEEEESSCC
T ss_pred CCeEEEEecCCccCCccCEeEEEEeCCccc
Confidence 799999999999999999999999999764
No 21
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=99.94 E-value=8.8e-26 Score=169.86 Aligned_cols=120 Identities=19% Similarity=0.293 Sum_probs=107.4
Q ss_pred ceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEecc-ccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEec
Q 038680 13 LTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRR-EAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQD 91 (161)
Q Consensus 13 ~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~-Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~ 91 (161)
.-++.+...++++++..|. .+|+|||||+ |+.++.||+++++.+++..++++++++++.++++++|++
T Consensus 18 ~~~~~e~p~~~v~l~~~~~--------~~H~LVIPk~~H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~--- 86 (149)
T 3i4s_A 18 TIDIGDLPLSKVLVIKDAN--------YPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIA--- 86 (149)
T ss_dssp EEEEEECSSEEEEEESCTT--------SCEEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE---
T ss_pred CEEEEEcCceEEEECCCCC--------CCEEEEEecccccCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe---
Confidence 4689999999999986553 6699999999 899999999999999999999999999999999999997
Q ss_pred CCCCCCccCeEEEEEeecCCCCCCCCchhhhhhHHHHHHHhhhcCCCccCcCCCHHHHHHHHHHHHhhc
Q 038680 92 GPEAGQTVPHVHIHVLPRKAGDFEKNDEIYDAIEVKEKELQQKLDLDKERKDRSLEEMNQEADQYRSLF 160 (161)
Q Consensus 92 ~~~ag~~v~HlH~HIIPR~~~d~~~~~~iy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 160 (161)
.+||+|+|+|+|||||+.+|..|+..+|+.. .+...+++|+++.|++||+.|
T Consensus 87 --~aGq~V~HlH~HvIPR~~~D~~~p~pvw~~~---------------~~~~~~~eel~~~a~~Ir~~L 138 (149)
T 3i4s_A 87 --ALGNLVPQLHVHIIARRTGDAAWPRPVWGVM---------------QPLAHDATEVQNFISALRRKI 138 (149)
T ss_dssp --ECCSSCCSCCEEEEEECTTSTTTTSCCTTTS---------------CCCCCCHHHHHHHHHHHHHHH
T ss_pred --ecCCcCCEEEEEEECCcCCCCCCCccccCCC---------------cCCCCCHHHHHHHHHHHHHHH
Confidence 4899999999999999999998888888742 234568999999999999876
No 22
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=99.92 E-value=2.7e-25 Score=166.71 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=84.2
Q ss_pred cccccccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcC-
Q 038680 3 CRRRLSLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHK- 81 (161)
Q Consensus 3 ~~~~~~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~- 81 (161)
|+.+- .+...++|||+++++||+|.+|.+ |||+||+||+|+.++.+|++++..+++.+++.+.+.+ +.++
T Consensus 40 C~ii~-~e~~~~iV~e~e~~~af~d~~P~~-------pgH~LViPkrHv~~l~dL~~~e~~~l~~l~~~~~~v~-~~~~~ 110 (147)
T 1xqu_A 40 CKIIK-RELPSTIYYEDERVIAIKDINPAA-------PVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVA-EDLGI 110 (147)
T ss_dssp HHHHT-TSSCBCEEEECSSEEEEECSSCSS-------SEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHH-HHTTC
T ss_pred ccccc-CCCCcEEEEECCcEEEEEecCCCC-------ccEEEEEeCcccCChhHCCHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 55432 234569999999999999999988 9999999999999999999998888877777444444 3344
Q ss_pred -CCceEEEEecCCCCCCccCeEEEEEeecCC
Q 038680 82 -GSSTTFAIQDGPEAGQTVPHVHIHVLPRKA 111 (161)
Q Consensus 82 -~~~~ni~~~~~~~ag~~v~HlH~HIIPR~~ 111 (161)
+++||+++|+|+.+||+|+|+|+|||||+.
T Consensus 111 ~~~gyni~~n~g~~aGq~v~HlHlHiiP~~~ 141 (147)
T 1xqu_A 111 AEKGYRLITNCGVAAGQTVFHLHYHLLGGVD 141 (147)
T ss_dssp TTTCEEEECCCSTTTTCCSCSCCEEEEESSC
T ss_pred CCCCEEEEEecCcccCCCccEEEEEEeCCCc
Confidence 569999999999999999999999999975
No 23
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=99.89 E-value=3.2e-23 Score=174.35 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=94.6
Q ss_pred ccccc-ccccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcC
Q 038680 3 CRRRL-SLRSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHK 81 (161)
Q Consensus 3 ~~~~~-~~~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~ 81 (161)
|+.+- +..++.++|+|+++|+||+|.+|.+ |||+||+||+|+.++.+|+++++.+|+.+++++++++.+.++
T Consensus 199 c~ii~~E~~~~~~iV~E~e~~~af~~~~p~~-------pgh~lViPK~Hv~~l~dL~~~e~~~La~~l~~v~~~l~~~~~ 271 (348)
T 1gup_A 199 VDYVQRELADGSRTVVETEHWLAVVPYWAAW-------PFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQ 271 (348)
T ss_dssp HHHHHHHHHHCTTEEEECSSEEEECCTTCCS-------TTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHhhccccCceEEEeCCcEEEEEccCCCC-------ceEEEEEeCcccCChHHCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 54432 3445779999999999999999987 999999999999999999999999999999999999999999
Q ss_pred CC-ceEEEEecCCCC--CCccCeEEEEEee---cCCCCCC
Q 038680 82 GS-STTFAIQDGPEA--GQTVPHVHIHVLP---RKAGDFE 115 (161)
Q Consensus 82 ~~-~~ni~~~~~~~a--g~~v~HlH~HIIP---R~~~d~~ 115 (161)
++ +||+++|.++.. ||+++|+|+|||| |+.++..
T Consensus 272 ~~~~Yn~g~~~~p~~g~~q~v~HlHiHiiPpl~R~~~~~~ 311 (348)
T 1gup_A 272 CSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRK 311 (348)
T ss_dssp SCCCEEEEEECCCSSSSCCTTCCCEEEEECCBCSSSSCBC
T ss_pred CCCCeEEEEEeCCCCCCCCcccEEEEEEecchhccCCccc
Confidence 97 999999999875 4899999999999 9887643
No 24
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=99.88 E-value=4.1e-23 Score=174.03 Aligned_cols=91 Identities=10% Similarity=0.140 Sum_probs=87.0
Q ss_pred EEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCC
Q 038680 15 KLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPE 94 (161)
Q Consensus 15 ~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~ 94 (161)
+|+|+++|+||+|.+|.+ |||+||+||+|+.++.+|+++++.+|+.+++++++++.+.+++++||+++|+++.
T Consensus 227 iV~E~e~~~af~~~~p~~-------P~h~lViPk~Hv~~l~dl~~~e~~~La~~l~~v~~~l~~~~~~~~yn~~~n~gp~ 299 (351)
T 1z84_A 227 VIDESSHFVSVAPFAATY-------PFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPL 299 (351)
T ss_dssp EEEECSSEEEEECTTCSS-------TTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECCCT
T ss_pred EEecCCcEEEEeccCCCC-------CeEEEEEeccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 999999999999999977 9999999999999999999999999999999999999999999999999999998
Q ss_pred CC----CccCeEEEEEeecCCC
Q 038680 95 AG----QTVPHVHIHVLPRKAG 112 (161)
Q Consensus 95 ag----~~v~HlH~HIIPR~~~ 112 (161)
+| |.++|+|+||+||+..
T Consensus 300 ~g~~~~q~v~HlHiHiiPR~~~ 321 (351)
T 1z84_A 300 KVTESQLPYTHWFLQIVPQLSG 321 (351)
T ss_dssp TCCGGGGGGCCCEEEEEECCCC
T ss_pred cCCCCCCccceEEEEEEccCCC
Confidence 87 7999999999999854
No 25
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=99.51 E-value=3.9e-15 Score=116.73 Aligned_cols=86 Identities=14% Similarity=0.188 Sum_probs=60.9
Q ss_pred EEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCH------HHHHHHHHHHH-H-HHHHHHh------hc
Q 038680 15 KLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTA------DETTDLWLTAQ-K-VGKQLES------YH 80 (161)
Q Consensus 15 ~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~------ee~~~l~~~~~-~-v~~~l~~------~~ 80 (161)
+||||+.++||.|++|.+ +||+|||||+|+.++.++.+ +.+..|..++. + +.+...+ .+
T Consensus 23 ~v~edd~~~af~D~~P~a-------~~H~LVIPk~h~~~~~~p~~al~d~~~Ll~~m~~la~~~~l~~~~~~~~~~~~~~ 95 (204)
T 3sp4_A 23 VIYYDDDVVLVRDMFPKS-------KMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQ 95 (204)
T ss_dssp EEEECSSEEEEECSSCSS-------SSEEEEEECCTTTTTSCHHHHHHHCHHHHHHHHHHHHTTTHHHHHHHHHHHSCTT
T ss_pred EEEEcCCEEEEeCCCCCC-------CccEEEEeccccCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 899999999999999999 99999999999999876543 12334444444 3 2222211 11
Q ss_pred -CC----CceEEEEecCCCCCCccCeEEEEEeecCC
Q 038680 81 -KG----SSTTFAIQDGPEAGQTVPHVHIHVLPRKA 111 (161)
Q Consensus 81 -~~----~~~ni~~~~~~~ag~~v~HlH~HIIPR~~ 111 (161)
+. ..+++|++ +++++.|+|+|||.+..
T Consensus 96 ~~~~~~~~~i~~GfH----a~PSm~HLHLHVIS~Df 127 (204)
T 3sp4_A 96 LTNEALCNYIKVGFH----AGPSMNNLHLHIMTLDH 127 (204)
T ss_dssp CCHHHHHTTEEEEEE----SSCSSSSCCEEEEESCC
T ss_pred CCcCCeeeeEeccCC----CCCcccceeEEEeccCC
Confidence 11 14677775 56799999999998754
No 26
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=98.96 E-value=1.8e-09 Score=88.89 Aligned_cols=90 Identities=11% Similarity=0.108 Sum_probs=74.5
Q ss_pred ccCceEEEEcCc----EEEEeCCC----CccccCCccCcEEEEEEeccc-cCCccCCCHHHHHHHHHHHHHHHHHHHhhc
Q 038680 10 RSGLTKLMRRKC----SIALLSPT----PWSTCARCFLHEHVLVCSRRE-AKRFADLTADETTDLWLTAQKVGKQLESYH 80 (161)
Q Consensus 10 ~~~~r~i~e~e~----~~a~~~~~----P~~~~~~~~~~Gh~LIiPk~H-v~~l~~L~~ee~~~l~~~~~~v~~~l~~~~ 80 (161)
++..++||+++. |+++.|.. |.+ .-|+|+||++| +.|+.+|+.+++.-+-.+.....+.+.+.+
T Consensus 148 ~E~e~ilyeD~d~~~gFvllpDlkWd~~~~~-------~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~~~~~i~~~y 220 (301)
T 3bl9_A 148 AEADRIVFENPDPSDGFVLIPDLKWNQQQLD-------DLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRY 220 (301)
T ss_dssp SSGGGCCEEECCTTTCEEEEECTTCCSSCST-------TCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CccccEEEecCCCCcCEEEeccCccCCCccc-------ccEEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhc
Confidence 455799999987 99999876 555 89999999998 999999999997777677666777777765
Q ss_pred C--CCceEEEEecCCCCCCccCeEEEEEeecC
Q 038680 81 K--GSSTTFAIQDGPEAGQTVPHVHIHVLPRK 110 (161)
Q Consensus 81 ~--~~~~ni~~~~~~~ag~~v~HlH~HIIPR~ 110 (161)
| .+.+.+++|-.| ++.|+|+|||...
T Consensus 221 ~~~~~~~rlgfHy~P----S~yHLHlHvis~~ 248 (301)
T 3bl9_A 221 RMKGDHLRVYLHYLP----SYYHLHVHFTALG 248 (301)
T ss_dssp CCCGGGEEEEEESSC----SSSSCEEEEEETT
T ss_pred CCChHHeEEEecCCC----CcceEEEEEEecC
Confidence 5 568999999887 5799999999754
No 27
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=98.93 E-value=2.7e-09 Score=89.10 Aligned_cols=90 Identities=11% Similarity=0.103 Sum_probs=73.0
Q ss_pred ccCceEEEEcCc----EEEEeCCC----CccccCCccCcEEEEEEeccc-cCCccCCCHHHHHHHHHHHHHHHHHHHhhc
Q 038680 10 RSGLTKLMRRKC----SIALLSPT----PWSTCARCFLHEHVLVCSRRE-AKRFADLTADETTDLWLTAQKVGKQLESYH 80 (161)
Q Consensus 10 ~~~~r~i~e~e~----~~a~~~~~----P~~~~~~~~~~Gh~LIiPk~H-v~~l~~L~~ee~~~l~~~~~~v~~~l~~~~ 80 (161)
++..++||+++. |++|.|.. |.+ .-|+|+||++| +.|+.+|+.+++.-|-.+.....+.+.+.+
T Consensus 195 ~E~e~vlyeD~d~~~gFvllpDlKWd~~~~~-------~lhlLaI~~~~dI~SlRdL~~~HlpLL~~M~~~~~~ii~~~y 267 (350)
T 1vlr_A 195 AEADRIVFENPDPSDGFVLIPDLKWNQQQLD-------DLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRY 267 (350)
T ss_dssp ---CCCSEEECCTTTCEEEEECTTCCSSCST-------TCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CccccEEEecCCCCCCeEEeccCccCCCccc-------cceEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhc
Confidence 456799999987 99999876 555 89999999998 999999999997777777776777777765
Q ss_pred C--CCceEEEEecCCCCCCccCeEEEEEeecC
Q 038680 81 K--GSSTTFAIQDGPEAGQTVPHVHIHVLPRK 110 (161)
Q Consensus 81 ~--~~~~ni~~~~~~~ag~~v~HlH~HIIPR~ 110 (161)
+ .+.+.+++|-.| ++.|+|+|||...
T Consensus 268 g~~~~~lRlgfHy~P----S~yHLHlHvis~~ 295 (350)
T 1vlr_A 268 QVTGDRLRVYLHYLP----SYYHLHVHFTALG 295 (350)
T ss_dssp CCCGGGEEEEEESSC----SSSSCEEEEEETT
T ss_pred CCChHHeEEEecCCC----CcceEEEEEEecc
Confidence 5 567999999887 5799999999754
No 28
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=98.49 E-value=7.9e-07 Score=74.56 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=75.9
Q ss_pred cCcEEEEeCCCCcc-ccCCc---------------cCcEEEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 038680 19 RKCSIALLSPTPWS-TCARC---------------FLHEHVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKG 82 (161)
Q Consensus 19 ~e~~~a~~~~~P~~-~~~~~---------------~~~Gh~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~ 82 (161)
+-.+++|.+.+|+. ....+ ....+|+|.+.+|..++.+|+.+++.++..+.+.-.+.|.+..+.
T Consensus 86 ~~~~~v~~N~fP~l~~~~~~~~~~~~~~l~~~~~~~G~~~Vii~sp~H~~~l~~ls~~e~~~vi~~~~~~~~~L~~~~~~ 165 (351)
T 1z84_A 86 NWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVVIESPVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSI 165 (351)
T ss_dssp SCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEEEECCSSSSCCGGGSCHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred CceEEEEcCCCccccCCCCCcccccccchhhccccCcceEEEEeCCCCCCCcHHCCHHHHHHHHHHHHHHHHHHhcccCC
Confidence 45789999999986 11100 012389999999999999999999999999998888888877677
Q ss_pred CceEEEEecCCCCCCccCeEEEEEeec
Q 038680 83 SSTTFAIQDGPEAGQTVPHVHIHVLPR 109 (161)
Q Consensus 83 ~~~ni~~~~~~~ag~~v~HlH~HIIPR 109 (161)
..++++.|.|+.+|.+.+|.|.||+.-
T Consensus 166 ~yv~iF~N~G~~aGaSl~HpH~QI~a~ 192 (351)
T 1z84_A 166 NYIQVFKNQGASAGASMSHSHSQMMAL 192 (351)
T ss_dssp CEEEEEEEESGGGTCCCSSCEEEEEEE
T ss_pred CEEEEEEEcCcccCCCCcCccceeEec
Confidence 889999999999999999999999864
No 29
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=96.23 E-value=0.017 Score=48.01 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=52.8
Q ss_pred EEEEEeccccCCccCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCccCeEEEEEeec
Q 038680 42 HVLVCSRREAKRFADLTADETTDLWLTAQKVGKQLESYHKGSSTTFAIQDGPEAGQTVPHVHIHVLPR 109 (161)
Q Consensus 42 h~LIiPk~Hv~~l~~L~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~~~~ag~~v~HlH~HIIPR 109 (161)
.|+|...+|-.++.+|+.+++..+..+...-...|.. +..-+.+.-|.|+.+|.|.+|-|.+|+.-
T Consensus 107 ~VIi~sp~H~~~l~~l~~~~~~~vi~~~~~r~~~l~~--~~~yV~iF~N~G~~~G~Sl~HpH~Qi~a~ 172 (348)
T 1gup_A 107 RVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGK--TYPWVQVFENKGAAMGCSNPHPGGQIWAN 172 (348)
T ss_dssp EEEESCSCTTCCGGGSCHHHHHHHHHHHHHHHHHHHH--HCSEEEEEEEESGGGTCSCCSSEEEEEEE
T ss_pred EEEEcCCcccCChhhCCHHHHHHHHHHHHHHHHHHhh--cCCEEEEecccCCcCCcCCCCCceeEEec
Confidence 6677777999999999999999888887776666663 23334466777999999999999999853
No 30
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=96.08 E-value=0.0073 Score=47.65 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=62.9
Q ss_pred CceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCcc---CC---CHHHHHHHHHHHHHHHHHHHhhcCCCce
Q 038680 12 GLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFA---DL---TADETTDLWLTAQKVGKQLESYHKGSST 85 (161)
Q Consensus 12 ~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~---~L---~~ee~~~l~~~~~~v~~~l~~~~~~~~~ 85 (161)
.+..|-....+++|.|+.- +.|.|+||-..++-+. -+ ++.-+..-|..-..|.+++.+.+..+.+
T Consensus 30 PC~~Vd~~~gyvvlKD~~G---------p~qyLLmPt~rItGIEsP~Ll~~~~pnYf~~AW~aR~~v~~~~g~pipd~~l 100 (227)
T 2pof_A 30 PCAEVKPNAGYVVLKDLNG---------PLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAV 100 (227)
T ss_dssp TSSEEETTTTEEEEECSSS---------SSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCCGGGE
T ss_pred CCceEccCCCEEEEeCCCC---------CceEEEeccccccCccChhhcCCCCCcHHHHHHHHhHHHHHhhCCCCCccce
Confidence 3445666788999998776 7799999998865443 22 2345777777777788888887766678
Q ss_pred EEEEecCCCCCCccCeEEEEEe
Q 038680 86 TFAIQDGPEAGQTVPHVHIHVL 107 (161)
Q Consensus 86 ni~~~~~~~ag~~v~HlH~HII 107 (161)
.+++|.. .|.+..|+|+||=
T Consensus 101 sLaINS~--~gRSQnQLHIHIs 120 (227)
T 2pof_A 101 SLAINSR--TGRTQNHFHIHIS 120 (227)
T ss_dssp EEEEBCG--GGCSCCSCCEEEE
T ss_pred EEEecCC--CCccccceeeehh
Confidence 8888754 5888899999964
No 31
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B), unknown function; 2.20A {Thermus thermophilus}
Probab=77.68 E-value=3.1 Score=28.94 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=21.2
Q ss_pred CCceEEEEecCCCCCCccCeEEEEEee
Q 038680 82 GSSTTFAIQDGPEAGQTVPHVHIHVLP 108 (161)
Q Consensus 82 ~~~~ni~~~~~~~ag~~v~HlH~HIIP 108 (161)
.+.+++.+| +...|-++||.|+|+.=
T Consensus 76 vDHVdi~~~-~gHpGve~PHyhI~l~~ 101 (116)
T 3vg8_G 76 IDHVNMIPS-GPHPGVSEPHYHIELVL 101 (116)
T ss_dssp CCEEEEEEC-CCCTTCCSCEEEEEEES
T ss_pred cceEEEecC-CCCCCcccCceEEEEEE
Confidence 568999986 45579999999999864
No 32
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=42.61 E-value=3.9 Score=28.20 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=32.9
Q ss_pred ccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHH
Q 038680 10 RSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTAD 60 (161)
Q Consensus 10 ~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~e 60 (161)
.+|.+++++.+...++-.... .|++.|.+|.|++++.=|+++
T Consensus 57 ssGEk~~lqp~d~si~tsL~~---------NgRLfvc~kd~~d~LtPlpeq 98 (104)
T 1wgy_A 57 FSGEKHELQPNDLVISKSLEA---------SGRIYVYRKDLADTLNPFAEN 98 (104)
T ss_dssp SSCCCCBCCTTSBSSCCSSCS---------SCEEEEEECCSSSCCCCCCCC
T ss_pred cCCcEeecCCcceEEEeeccc---------cceEEEeehHhcccccCCccc
Confidence 367788887777776655555 789999999999998877764
No 33
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=38.20 E-value=4.8 Score=28.44 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=33.1
Q ss_pred ccCceEEEEcCcEEEEeCCCCccccCCccCcEEEEEEeccccCCccCCCHH
Q 038680 10 RSGLTKLMRRKCSIALLSPTPWSTCARCFLHEHVLVCSRREAKRFADLTAD 60 (161)
Q Consensus 10 ~~~~r~i~e~e~~~a~~~~~P~~~~~~~~~~Gh~LIiPk~Hv~~l~~L~~e 60 (161)
.+|.+++++.+...++-.... .|++.|.+|.|++++.=|+++
T Consensus 63 ssGEk~vlqp~d~sv~tsL~~---------NgRLfvc~kd~~d~LtPLpEq 104 (120)
T 2dhz_A 63 SSGEKVLLQPTEDCVFTALGI---------NSHLFACTRDSYEALVPLPEE 104 (120)
T ss_dssp TTCCCEECCTTCSCHHHHSCS---------SEEEEEECTTTTTTCCCCCCS
T ss_pred cCCcEeecCCcceEEEeeccc---------cceEEEeehHhcccccCCccc
Confidence 467788888777766655555 789999999999999888764
No 34
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=32.64 E-value=48 Score=21.52 Aligned_cols=22 Identities=14% Similarity=-0.013 Sum_probs=1.4
Q ss_pred cCeEEEEEeecCCCCCCCCchh
Q 038680 99 VPHVHIHVLPRKAGDFEKNDEI 120 (161)
Q Consensus 99 v~HlH~HIIPR~~~d~~~~~~i 120 (161)
..|+|+|.+|-...+......+
T Consensus 4 ~~~~~~~~~~~~~~~~~M~~~~ 25 (99)
T 3g5g_A 4 SHHHHHHSSGLVPRGSHMESFL 25 (99)
T ss_dssp ------------------CCHH
T ss_pred ccccccccCCCCCccccccHHH
Confidence 3699999998776554433333
No 35
>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase, DNA replication, transferase/DNA complex; HET: DNA; 1.95A {Escherichia coli} SCOP: d.89.1.5 PDB: 1osb_A* 1qx0_A* 1s6m_A* 1zm5_A* 2cdm_A
Probab=29.71 E-value=99 Score=24.69 Aligned_cols=20 Identities=15% Similarity=-0.022 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 038680 59 ADETTDLWLTAQKVGKQLES 78 (161)
Q Consensus 59 ~ee~~~l~~~~~~v~~~l~~ 78 (161)
+..+..+..+++.+...+.+
T Consensus 104 ~~i~~Ah~~AV~~al~~lE~ 123 (293)
T 1omh_A 104 AEIIKAHDRAVARTLEQAEA 123 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455556667767777766
No 36
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=28.34 E-value=1.2e+02 Score=21.83 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=32.5
Q ss_pred chhhhhhHHHHHHHhhhcCCCcc--CcCCCHHHHHHHHHHHH
Q 038680 118 DEIYDAIEVKEKELQQKLDLDKE--RKDRSLEEMNQEADQYR 157 (161)
Q Consensus 118 ~~iy~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~ 157 (161)
+.||+.....+..+.+++++++. ...++++|++.+.+.+.
T Consensus 33 t~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~ 74 (146)
T 3u5c_S 33 TTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQ 74 (146)
T ss_dssp GGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHT
T ss_pred hhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHH
Confidence 67888888888888889888876 44678999998887764
No 37
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=25.63 E-value=1.1e+02 Score=21.10 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=31.2
Q ss_pred chhhhhhHHHHHHHhhhcCCCcc--CcCCCHHHHHHHHHHH
Q 038680 118 DEIYDAIEVKEKELQQKLDLDKE--RKDRSLEEMNQEADQY 156 (161)
Q Consensus 118 ~~iy~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~ 156 (161)
+.||+.....+..+..++++++. ...++++|+..+.+.+
T Consensus 19 t~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 19 TSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp GGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHH
T ss_pred hhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHH
Confidence 57788888888888888888877 4467889998888776
No 38
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=25.09 E-value=34 Score=23.94 Aligned_cols=25 Identities=8% Similarity=0.013 Sum_probs=19.5
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHh
Q 038680 54 FADLTADETTDLWLTAQKVGKQLES 78 (161)
Q Consensus 54 l~~L~~ee~~~l~~~~~~v~~~l~~ 78 (161)
+..++++++..+...+.++.+.+..
T Consensus 128 ~~~l~~ee~~~l~~~L~~l~~~l~~ 152 (168)
T 2nyx_A 128 VEQMAPAERHGLVRALTAFTEAGGE 152 (168)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhcC
Confidence 4678888888888888888777654
No 39
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=24.94 E-value=19 Score=18.36 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhh
Q 038680 147 EEMNQEADQYRSL 159 (161)
Q Consensus 147 ~~~~~~a~~~~~~ 159 (161)
++++.+++++|++
T Consensus 2 ~~l~vecaqlr~~ 14 (27)
T 2jm6_A 2 ADLKDECAQLRRI 14 (27)
T ss_dssp TTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 4567778888763
No 40
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=22.74 E-value=85 Score=22.02 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=32.3
Q ss_pred chhhhhhHHHHHHHhhhcCCCcc--CcCCCHHHHHHHHHHHHh
Q 038680 118 DEIYDAIEVKEKELQQKLDLDKE--RKDRSLEEMNQEADQYRS 158 (161)
Q Consensus 118 ~~iy~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~ 158 (161)
+.||+.....+..+..++++++. ...++++|+..+.+.+..
T Consensus 20 t~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~ 62 (126)
T 2vqe_M 20 TYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN 62 (126)
T ss_dssp TTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHT
T ss_pred hccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHH
Confidence 46777777777888888888877 556799999988887764
No 41
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=22.18 E-value=1.1e+02 Score=16.86 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=16.1
Q ss_pred CccCcCCCHHHHHHHHHHHHh
Q 038680 138 DKERKDRSLEEMNQEADQYRS 158 (161)
Q Consensus 138 ~~~~~~~~~~~~~~~a~~~~~ 158 (161)
+....+.++|||++-.+.||.
T Consensus 6 ~~PG~dA~~Eela~Y~~~Lrh 26 (36)
T 2bf9_A 6 TYPGDDAPVEDLIRFYNDLQQ 26 (36)
T ss_dssp CCCCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 344556789999999888875
Done!