BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038682
         (382 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NZW|A Chain A, Crystal Structure Of Alpha1,3-Fucosyltransferase
 pdb|2NZW|B Chain B, Crystal Structure Of Alpha1,3-Fucosyltransferase
 pdb|2NZW|C Chain C, Crystal Structure Of Alpha1,3-Fucosyltransferase
 pdb|2NZX|A Chain A, Crystal Structure Of Alpha1,3-Fucosyltransferase With Gdp
 pdb|2NZX|B Chain B, Crystal Structure Of Alpha1,3-Fucosyltransferase With Gdp
 pdb|2NZX|C Chain C, Crystal Structure Of Alpha1,3-Fucosyltransferase With Gdp
 pdb|2NZY|A Chain A, Crystal Structure Of Alpha1,3-Fucosyltransferase With Gdp-
           Fucose
 pdb|2NZY|B Chain B, Crystal Structure Of Alpha1,3-Fucosyltransferase With Gdp-
           Fucose
 pdb|2NZY|C Chain C, Crystal Structure Of Alpha1,3-Fucosyltransferase With Gdp-
           Fucose
          Length = 371

 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 16/143 (11%)

Query: 95  AAFIS---NCGARNFRLQALEALEKENVKIDSYGGCHRNRDGRV--EKVETLKRYKFSLA 149
           A+F++   N   RN    AL ++E       + GG  RN  G     K E L +YKF+L 
Sbjct: 183 ASFVASNPNAPIRNAFYDALNSIEPV-----TGGGSVRNTLGYNVKNKNEFLSQYKFNLC 237

Query: 150 FENSNEEDYVTEKFFQALXXXXXXXXXXXXNI-QDFAPSPKSILHIREREDVKSVAKTMK 208
           FEN+    YVTEK   A             ++ +DF  +PKS +++ + ++       +K
Sbjct: 238 FENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDF--NPKSFVNVHDFKNFDEAIDYIK 295

Query: 209 YLAENPEAYNQSLSWKYEGPSDS 231
           YL  +  AY   L   YE P ++
Sbjct: 296 YLHTHKNAY---LDMLYENPLNT 315


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,715,285
Number of Sequences: 62578
Number of extensions: 395705
Number of successful extensions: 824
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 822
Number of HSP's gapped (non-prelim): 1
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)