Query 038682
Match_columns 382
No_of_seqs 241 out of 818
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 23:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nzw_A Alpha1,3-fucosyltransfe 100.0 3.7E-58 1.3E-62 459.4 12.6 248 4-257 49-341 (371)
2 3qhp_A Type 1 capsular polysac 93.6 0.52 1.8E-05 39.1 10.1 102 107-220 44-147 (166)
3 2bfw_A GLGA glycogen synthase; 68.4 7.2 0.00025 32.9 5.4 103 107-220 84-188 (200)
4 3okp_A GDP-mannose-dependent a 65.1 16 0.00056 33.7 7.6 81 138-220 267-351 (394)
5 2jjm_A Glycosyl transferase, g 62.2 16 0.00055 34.3 7.1 78 138-220 279-357 (394)
6 2gek_A Phosphatidylinositol ma 60.5 8.5 0.00029 36.0 4.7 124 93-220 209-356 (406)
7 2iw1_A Lipopolysaccharide core 52.5 14 0.00049 34.0 4.8 79 139-220 266-344 (374)
8 2l60_A Peptide YY; GPCR ligand 51.6 9.3 0.00032 26.4 2.4 16 195-210 13-28 (41)
9 3c48_A Predicted glycosyltrans 48.7 28 0.00096 33.0 6.3 79 138-220 320-398 (438)
10 2f9f_A First mannosyl transfer 43.6 24 0.00084 29.4 4.5 73 138-216 92-165 (177)
11 2r60_A Glycosyl transferase, g 37.2 40 0.0014 32.8 5.5 57 162-220 374-431 (499)
12 2x6q_A Trehalose-synthase TRET 35.6 41 0.0014 31.6 5.2 55 162-220 331-386 (416)
13 1f8p_A Neuropeptide Y (PNPY); 33.6 13 0.00045 25.1 0.8 17 195-211 9-25 (37)
14 1k8v_A Neuropeptide F; moniezi 30.2 14 0.00047 25.4 0.5 17 195-211 12-28 (40)
15 2qzs_A Glycogen synthase; glyc 25.5 79 0.0027 30.4 5.3 57 162-220 382-451 (485)
16 3fro_A GLGA glycogen synthase; 24.4 57 0.0019 30.4 3.9 77 139-220 326-403 (439)
17 1rzu_A Glycogen synthase 1; gl 24.3 89 0.0031 30.0 5.4 57 162-220 381-450 (485)
18 3h16_A TIR protein; bacteria T 21.6 1.8E+02 0.0063 24.1 6.2 75 139-213 69-154 (154)
19 3oy2_A Glycosyltransferase B73 21.6 1.2E+02 0.0041 28.3 5.6 57 162-221 289-363 (413)
20 1jb0_D Photosystem 1 reaction 21.2 31 0.001 29.4 1.1 16 335-350 77-92 (138)
No 1
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=100.00 E-value=3.7e-58 Score=459.39 Aligned_cols=248 Identities=21% Similarity=0.229 Sum_probs=196.0
Q ss_pred cCCc-ccEEEecCCC--CCCeEEeCC----------CCCCCeEEEeccCCCccccc-cchhh----hcCCCCcEEEEeee
Q 038682 4 VCDV-RCKFGYDDDR--KPDASFGMS----------QQPGTDTVLRSMESSQYYAE-NNIAQ----ARRRGYTIVMTTSL 65 (382)
Q Consensus 4 ~C~v-~C~~t~dr~~--~~DAvf~l~----------r~p~Q~~V~~s~Esp~~~~~-~n~~~----~~~~~fn~tMTyr~ 65 (382)
.|++ +|.+|.|++. .+|.|||.+ |++.|.||++++|||.+... ..+.. ...+.||||||||+
T Consensus 49 ~c~~~~C~iT~dr~~~~~aDvVFh~~~~~~~~lp~~R~~~Q~fv~~~~EsP~~~~~d~~ig~d~~~~~~~~FN~TmtYr~ 128 (371)
T 2nzw_A 49 FILSQRYTITLHQNPNEFSDLVFGNPLGSARKILSYQNAKRVFYTGENESPNFNLFDYAIGFDELDFNDRYLRMPLYYDR 128 (371)
T ss_dssp HHHHTTSEEEEECCTTBCCSEEEECCCTHHHHHHHHHCSEEEECCSSSCCCCTTTCSEEEESSCCBCGGGEEECCHHHHH
T ss_pred ccCCCCeEEeeCCCccccccEEEcCCCcccccCCCCCCCCCEEEEEeecCCccccccccccccccccCCCeEEEEEEeee
Confidence 4876 8999999986 568566643 36899999999999975532 01111 11456999999999
Q ss_pred c-------CCCcccccc--cccccccCC-----------------CCCCcccceEEEEecCCccchHHHHHHHHHHhcCc
Q 038682 66 S-------SDVPVGYFS--WAEYDIMAP-----------------VQPKTESALAAAFISNCGARNFRLQALEALEKENV 119 (382)
Q Consensus 66 d-------SDi~~~Y~s--~~~~~~~~p-----------------~~~K~k~~l~aw~vSNC~~~~~R~~~v~~L~k~~i 119 (382)
| |||+.||+. +..+.+..| .....|+++|+||+|||.+ ..|.+|+++|+++ +
T Consensus 129 d~~~~~~~SDi~~pYg~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~K~k~v~wvvSnc~~-~~R~~~~~~L~k~-i 206 (371)
T 2nzw_A 129 LHHKAESVNDTTAPYKLKDNSLYALKKPSHCFKEKHPNLCAVVNDESDPLKRGFASFVASNPNA-PIRNAFYDALNSI-E 206 (371)
T ss_dssp HHHHHHHTCBTTCSSCCCTTSGGGSSCCBSCHHHHCHHHHHHHTTSSCTTSSEEEEECCSCCCC-HHHHHHHHHHTTT-S
T ss_pred ccccccccCceeccCccccccchhcccccccccccchhhhhhhhccccCCCceEEEEEEeCCCc-HHHHHHHHHHhCc-C
Confidence 9 999999985 211111111 1123466799999999987 5799999999995 9
Q ss_pred ceEEeCCCCCCCCC-chhHHhhhccceeEEeeecCCCCccchHHHHHHHhcCeeEEEECCCCcccccCCCCCceeecCCC
Q 038682 120 KIDSYGGCHRNRDG-RVEKVETLKRYKFSLAFENSNEEDYVTEKFFQALVAGSVPVVVGAPNIQDFAPSPKSILHIRERE 198 (382)
Q Consensus 120 ~VD~yG~C~~n~~~-~~~k~e~l~~YKFyLAfENs~c~DYVTEK~~~al~~g~VPIv~G~~n~~~~~P~p~SfI~v~dF~ 198 (382)
+||+||+|+++.+. ..+|.+++++||||||||||+|+||||||||+||.+|+||||+|++|+.+++| |+|||+++||+
T Consensus 207 ~Vd~~G~c~~~~~~~~~~~~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G~~~~~~~~P-p~SfI~~~dF~ 285 (371)
T 2nzw_A 207 PVTGGGSVRNTLGYNVKNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFN-PKSFVNVHDFK 285 (371)
T ss_dssp CCEECSSTTCCSSSCCSCHHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGGGTSC-GGGSEEGGGSS
T ss_pred CEeeCCCccCCCCCccccHHHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEECCCchhhhCC-CCceEEcccCC
Confidence 99999999986432 34688999999999999999999999999999999999999999999999999 89999999999
Q ss_pred CHHHHHHHHHHHhcCHHHHHHhhhhhhcCCCchHHHHHhhccCChhhHHHHHHHHhhhH
Q 038682 199 DVKSVAKTMKYLAENPEAYNQSLSWKYEGPSDSFKALVDMAAVHSSCRLCIYLATKIQE 257 (382)
Q Consensus 199 s~~eLA~yL~~L~~n~~~Y~~yf~Wr~~~~~~~~~~l~~~~~~~~~C~LC~~l~~~~r~ 257 (382)
||++||+||++|++|+++|++||.||....+...... ....+.|+||..+...+..
T Consensus 286 s~~~La~yL~~L~~n~~~Y~~y~~w~~~~~i~~~~~~---y~~~~~c~lc~~l~~~~~~ 341 (371)
T 2nzw_A 286 NFDEAIDYIKYLHTHKNAYLDMLYENPLNTLDGKAYF---YQNLSFKKILAFFKTILEN 341 (371)
T ss_dssp SHHHHHHHHHHHHTCHHHHHHHHHSCSSCEETTEECC---GGGCCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHhcCCcccccccccc---ccccchhHHHHHHHHHhcC
Confidence 9999999999999999999999999854322211000 1123689999998764444
No 2
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=93.55 E-value=0.52 Score=39.09 Aligned_cols=102 Identities=21% Similarity=0.237 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCcceEEeCCCCCCCCCchhHHhhhccceeEEeeecCCCCccchHHHHHHHhcCeeEEEECC--CCcccc
Q 038682 107 RLQALEALEKENVKIDSYGGCHRNRDGRVEKVETLKRYKFSLAFENSNEEDYVTEKFFQALVAGSVPVVVGA--PNIQDF 184 (382)
Q Consensus 107 R~~~v~~L~k~~i~VD~yG~C~~n~~~~~~k~e~l~~YKFyLAfENs~c~DYVTEK~~~al~~g~VPIv~G~--~n~~~~ 184 (382)
+..+-+.+.+.++.|.. |... ..+..+.++....++.- |..+.+= =++.+|+.+|+|||+-.. +...++
T Consensus 44 ~~~~~~~~~~~~~~v~~-g~~~-----~~~~~~~~~~adv~v~p--s~~e~~~-~~~~Eama~G~vPvi~~~~~~~~~~~ 114 (166)
T 3qhp_A 44 EKKIKLLAQKLGVKAEF-GFVN-----SNELLEILKTCTLYVHA--ANVESEA-IACLEAISVGIVPVIANSPLSATRQF 114 (166)
T ss_dssp HHHHHHHHHHHTCEEEC-CCCC-----HHHHHHHHTTCSEEEEC--CCSCCCC-HHHHHHHHTTCCEEEECCTTCGGGGG
T ss_pred HHHHHHHHHHcCCeEEE-eecC-----HHHHHHHHHhCCEEEEC--CcccCcc-HHHHHHHhcCCCcEEeeCCCCchhhh
Confidence 33344444444566665 6542 22445667777766652 3333333 388999999999999933 245566
Q ss_pred cCCCCCceeecCCCCHHHHHHHHHHHhcCHHHHHHh
Q 038682 185 APSPKSILHIREREDVKSVAKTMKYLAENPEAYNQS 220 (382)
Q Consensus 185 ~P~p~SfI~v~dF~s~~eLA~yL~~L~~n~~~Y~~y 220 (382)
+. .+.. +-+..++++||+.|..+.+|++.+.+.
T Consensus 115 ~~-~~~~--~~~~~~~~~l~~~i~~l~~~~~~~~~~ 147 (166)
T 3qhp_A 115 AL-DERS--LFEPNNAKDLSAKIDWWLENKLERERM 147 (166)
T ss_dssp CS-SGGG--EECTTCHHHHHHHHHHHHHCHHHHHHH
T ss_pred cc-CCce--EEcCCCHHHHHHHHHHHHhCHHHHHHH
Confidence 65 3333 335678999999999999998877665
No 3
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=68.44 E-value=7.2 Score=32.89 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCcceEE-eCCCCCCCCCchhHHhhhccceeEEeeecCCCCccchHHHHHHHhcCeeEEEECCCCccccc
Q 038682 107 RLQALEALEKENVKIDS-YGGCHRNRDGRVEKVETLKRYKFSLAFENSNEEDYVTEKFFQALVAGSVPVVVGAPNIQDFA 185 (382)
Q Consensus 107 R~~~v~~L~k~~i~VD~-yG~C~~n~~~~~~k~e~l~~YKFyLAfENs~c~DYVTEK~~~al~~g~VPIv~G~~n~~~~~ 185 (382)
+..+.+.+.+++ .|.. .|..- ..+..+.++...++|.. |..+. ..=++.+|+..|+..|+...+.+.+++
T Consensus 84 ~~~l~~~~~~~~-~v~~~~g~~~-----~~~~~~~~~~ad~~l~p--s~~e~-~~~~~~Ea~a~G~PvI~~~~~~~~e~~ 154 (200)
T 2bfw_A 84 EGWARSLEEKHG-NVKVITEMLS-----REFVRELYGSVDFVIIP--SYFEP-FGLVALEAMCLGAIPIASAVGGLRDII 154 (200)
T ss_dssp HHHHHHHHHHCT-TEEEECSCCC-----HHHHHHHHTTCSEEEEC--CSCCS-SCHHHHHHHHTTCEEEEESCHHHHHHC
T ss_pred HHHHHHHHHhcC-CEEEEeccCC-----HHHHHHHHHHCCEEEEC--CCCCC-ccHHHHHHHHCCCCEEEeCCCChHHHc
Confidence 333333344443 6776 66542 12345667777777763 22233 245789999999876666555556666
Q ss_pred CCCCCceeecCCCCHHHHHHHHHHHhc-CHHHHHHh
Q 038682 186 PSPKSILHIREREDVKSVAKTMKYLAE-NPEAYNQS 220 (382)
Q Consensus 186 P~p~SfI~v~dF~s~~eLA~yL~~L~~-n~~~Y~~y 220 (382)
...+.++ + +..++++||+-|..|.+ |++.+.+.
T Consensus 155 ~~~~g~~-~-~~~~~~~l~~~i~~l~~~~~~~~~~~ 188 (200)
T 2bfw_A 155 TNETGIL-V-KAGDPGELANAILKALELSRSDLSKF 188 (200)
T ss_dssp CTTTCEE-E-CTTCHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCceEE-e-cCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 3223333 2 45689999999999999 99887765
No 4
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=65.12 E-value=16 Score=33.75 Aligned_cols=81 Identities=14% Similarity=0.147 Sum_probs=50.0
Q ss_pred HhhhccceeEEeeecCCC----CccchHHHHHHHhcCeeEEEECCCCcccccCCCCCceeecCCCCHHHHHHHHHHHhcC
Q 038682 138 VETLKRYKFSLAFENSNE----EDYVTEKFFQALVAGSVPVVVGAPNIQDFAPSPKSILHIREREDVKSVAKTMKYLAEN 213 (382)
Q Consensus 138 ~e~l~~YKFyLAfENs~c----~DYVTEK~~~al~~g~VPIv~G~~n~~~~~P~p~SfI~v~dF~s~~eLA~yL~~L~~n 213 (382)
.+.++...+.+.-=.... .+=..=++.+|+.+|+-.|.-..+...+++. .+.-+ +-+-.++++||+-|..|.+|
T Consensus 267 ~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~-~~~g~-~~~~~d~~~l~~~i~~l~~~ 344 (394)
T 3okp_A 267 INTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVT-PATGL-VVEGSDVDKLSELLIELLDD 344 (394)
T ss_dssp HHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCC-TTTEE-ECCTTCHHHHHHHHHHHHTC
T ss_pred HHHHHhCCEEEecCccccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHh-cCCce-EeCCCCHHHHHHHHHHHHhC
Confidence 445666666665322210 0112238899999995444433345667765 33222 23445899999999999999
Q ss_pred HHHHHHh
Q 038682 214 PEAYNQS 220 (382)
Q Consensus 214 ~~~Y~~y 220 (382)
++.+.++
T Consensus 345 ~~~~~~~ 351 (394)
T 3okp_A 345 PIRRAAM 351 (394)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887765
No 5
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=62.21 E-value=16 Score=34.27 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=49.9
Q ss_pred HhhhccceeEEeeecCCCCccchHHHHHHHhcCeeEEEECCCCcccccCC-CCCceeecCCCCHHHHHHHHHHHhcCHHH
Q 038682 138 VETLKRYKFSLAFENSNEEDYVTEKFFQALVAGSVPVVVGAPNIQDFAPS-PKSILHIREREDVKSVAKTMKYLAENPEA 216 (382)
Q Consensus 138 ~e~l~~YKFyLAfENs~c~DYVTEK~~~al~~g~VPIv~G~~n~~~~~P~-p~SfI~v~dF~s~~eLA~yL~~L~~n~~~ 216 (382)
.+.++.....+.- |..+.+ .=++.+|+.+|+-.|.-..+.+.+++.. .+.++ + +..++++||+.|..|.+|++.
T Consensus 279 ~~~~~~adv~v~p--s~~e~~-~~~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~-~-~~~d~~~la~~i~~l~~~~~~ 353 (394)
T 2jjm_A 279 AELLAMSDLMLLL--SEKESF-GLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYL-C-EVGDTTGVADQAIQLLKDEEL 353 (394)
T ss_dssp HHHHHTCSEEEEC--CSCCSC-CHHHHHHHHTTCCEEEECCTTSTTTCCBTTTEEE-E-CTTCHHHHHHHHHHHHHCHHH
T ss_pred HHHHHhCCEEEec--cccCCC-chHHHHHHhcCCCEEEecCCChHHHhhcCCceEE-e-CCCCHHHHHHHHHHHHcCHHH
Confidence 3455555555542 223333 3378999999966665555556666641 12332 2 456899999999999999887
Q ss_pred HHHh
Q 038682 217 YNQS 220 (382)
Q Consensus 217 Y~~y 220 (382)
+.++
T Consensus 354 ~~~~ 357 (394)
T 2jjm_A 354 HRNM 357 (394)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 6
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=60.48 E-value=8.5 Score=35.98 Aligned_cols=124 Identities=16% Similarity=0.149 Sum_probs=71.8
Q ss_pred eEEEEecCC-ccchHH---HHHHHHHHhc--CcceEEeCCCCC------------CC--CCc---hhHHhhhccceeEEe
Q 038682 93 LAAAFISNC-GARNFR---LQALEALEKE--NVKIDSYGGCHR------------NR--DGR---VEKVETLKRYKFSLA 149 (382)
Q Consensus 93 l~aw~vSNC-~~~~~R---~~~v~~L~k~--~i~VD~yG~C~~------------n~--~~~---~~k~e~l~~YKFyLA 149 (382)
....++++. .....= .+.+.+|.+. .+.+.+.|.... +. .|. .+..+.++...+++.
T Consensus 209 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ 288 (406)
T 2gek_A 209 RTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDEDELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCA 288 (406)
T ss_dssp CEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSCHHHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEE
T ss_pred eEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCcHHHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEe
Confidence 344455665 332211 2334445432 478888997642 00 011 122456677777765
Q ss_pred eecCC-CCccchHHHHHHHhcCeeEEEECCCCcccccCCCCCceeecCCCCHHHHHHHHHHHhcCHHHHHHh
Q 038682 150 FENSN-EEDYVTEKFFQALVAGSVPVVVGAPNIQDFAPSPKSILHIREREDVKSVAKTMKYLAENPEAYNQS 220 (382)
Q Consensus 150 fENs~-c~DYVTEK~~~al~~g~VPIv~G~~n~~~~~P~p~SfI~v~dF~s~~eLA~yL~~L~~n~~~Y~~y 220 (382)
. |. .+.+ -=++.+|+..|+-.|.-..+.+.+++. .+..-.+-+..++++||+-|..|.+|++.+.+.
T Consensus 289 p--s~~~e~~-~~~~~Ea~a~G~PvI~~~~~~~~e~i~-~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~ 356 (406)
T 2gek_A 289 P--HLGGESF-GIVLVEAMAAGTAVVASDLDAFRRVLA-DGDAGRLVPVDDADGMAAALIGILEDDQLRAGY 356 (406)
T ss_dssp C--CCSCCSS-CHHHHHHHHHTCEEEECCCHHHHHHHT-TTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHH
T ss_pred c--CCCCCCC-chHHHHHHHcCCCEEEecCCcHHHHhc-CCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHH
Confidence 4 22 2333 337999999997555544445566665 222112235578999999999999999877765
No 7
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=52.52 E-value=14 Score=33.95 Aligned_cols=79 Identities=10% Similarity=0.039 Sum_probs=48.1
Q ss_pred hhhccceeEEeeecCCCCccchHHHHHHHhcCeeEEEECCCCcccccCCCCCceeecCCCCHHHHHHHHHHHhcCHHHHH
Q 038682 139 ETLKRYKFSLAFENSNEEDYVTEKFFQALVAGSVPVVVGAPNIQDFAPSPKSILHIREREDVKSVAKTMKYLAENPEAYN 218 (382)
Q Consensus 139 e~l~~YKFyLAfENs~c~DYVTEK~~~al~~g~VPIv~G~~n~~~~~P~p~SfI~v~dF~s~~eLA~yL~~L~~n~~~Y~ 218 (382)
+.++....++.- |..+.+ -=++.+|+.+|+-.|.-..+...+++.....-+-+.+-.++++||+-|..|.+|++.+.
T Consensus 266 ~~~~~ad~~v~p--s~~e~~-~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~ 342 (374)
T 2iw1_A 266 ELMAAADLLLHP--AYQEAA-GIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRM 342 (374)
T ss_dssp HHHHHCSEEEEC--CSCCSS-CHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhcCEEEec--cccCCc-ccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHHcChHHHH
Confidence 344444444432 222333 34789999999855555444444444311222334445689999999999999988877
Q ss_pred Hh
Q 038682 219 QS 220 (382)
Q Consensus 219 ~y 220 (382)
+.
T Consensus 343 ~~ 344 (374)
T 2iw1_A 343 AW 344 (374)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 8
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=51.64 E-value=9.3 Score=26.36 Aligned_cols=16 Identities=6% Similarity=0.061 Sum_probs=14.3
Q ss_pred cCCCCHHHHHHHHHHH
Q 038682 195 REREDVKSVAKTMKYL 210 (382)
Q Consensus 195 ~dF~s~~eLA~yL~~L 210 (382)
.|++||++||+|+..|
T Consensus 13 g~~aspEela~Y~~~L 28 (41)
T 2l60_A 13 LKKLSPEELNRYYASL 28 (41)
T ss_dssp HTTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3789999999999888
No 9
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=48.72 E-value=28 Score=32.96 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=49.1
Q ss_pred HhhhccceeEEeeecCCCCccchHHHHHHHhcCeeEEEECCCCcccccCCCCCceeecCCCCHHHHHHHHHHHhcCHHHH
Q 038682 138 VETLKRYKFSLAFENSNEEDYVTEKFFQALVAGSVPVVVGAPNIQDFAPSPKSILHIREREDVKSVAKTMKYLAENPEAY 217 (382)
Q Consensus 138 ~e~l~~YKFyLAfENs~c~DYVTEK~~~al~~g~VPIv~G~~n~~~~~P~p~SfI~v~dF~s~~eLA~yL~~L~~n~~~Y 217 (382)
.+.++.....+.- |..+.+ .=++.+|+.+|+-.|.-..+.+.+++.....-+-+ +..++++||+-|..|.+|++.+
T Consensus 320 ~~~~~~adv~v~p--s~~e~~-~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~~d~~~la~~i~~l~~~~~~~ 395 (438)
T 3c48_A 320 VAVYRAADIVAVP--SFNESF-GLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLV-DGHSPHAWADALATLLDDDETR 395 (438)
T ss_dssp HHHHHHCSEEEEC--CSCCSS-CHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEE-SSCCHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHhCCEEEEC--ccccCC-chHHHHHHHcCCCEEecCCCChhHHhhCCCcEEEC-CCCCHHHHHHHHHHHHcCHHHH
Confidence 3445555555442 222332 34788999999865555444555666412222223 4557999999999999998877
Q ss_pred HHh
Q 038682 218 NQS 220 (382)
Q Consensus 218 ~~y 220 (382)
.++
T Consensus 396 ~~~ 398 (438)
T 3c48_A 396 IRM 398 (438)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 10
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=43.55 E-value=24 Score=29.42 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=46.0
Q ss_pred HhhhccceeEEeeecCCCCccchHHHHHHHhcCeeEEEECCCCcccccCC-CCCceeecCCCCHHHHHHHHHHHhcCHHH
Q 038682 138 VETLKRYKFSLAFENSNEEDYVTEKFFQALVAGSVPVVVGAPNIQDFAPS-PKSILHIREREDVKSVAKTMKYLAENPEA 216 (382)
Q Consensus 138 ~e~l~~YKFyLAfENs~c~DYVTEK~~~al~~g~VPIv~G~~n~~~~~P~-p~SfI~v~dF~s~~eLA~yL~~L~~n~~~ 216 (382)
.+.++....++.. +..+.+ .=++.+|+.+|+..|....+.+.+++.. .+.++ + -.++++||+.|..|.+|++.
T Consensus 92 ~~~~~~adi~v~p--s~~e~~-~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~-~--~~d~~~l~~~i~~l~~~~~~ 165 (177)
T 2f9f_A 92 IDLYSRCKGLLCT--AKDEDF-GLTPIEAMASGKPVIAVNEGGFKETVINEKTGYL-V--NADVNEIIDAMKKVSKNPDK 165 (177)
T ss_dssp HHHHHHCSEEEEC--CSSCCS-CHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEE-E--CSCHHHHHHHHHHHHHCTTT
T ss_pred HHHHHhCCEEEeC--CCcCCC-ChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEE-e--CCCHHHHHHHHHHHHhCHHH
Confidence 4455666666641 222222 3478999999986666554455566541 13343 3 46899999999999888763
No 11
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=37.25 E-value=40 Score=32.84 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=40.5
Q ss_pred HHHHHHhcCeeEEEECCCCcccccCCC-CCceeecCCCCHHHHHHHHHHHhcCHHHHHHh
Q 038682 162 KFFQALVAGSVPVVVGAPNIQDFAPSP-KSILHIREREDVKSVAKTMKYLAENPEAYNQS 220 (382)
Q Consensus 162 K~~~al~~g~VPIv~G~~n~~~~~P~p-~SfI~v~dF~s~~eLA~yL~~L~~n~~~Y~~y 220 (382)
++.+|+.+|+-.|.-..+.+.+++... +.++ + +..++++||+-|..|.+|++.+.++
T Consensus 374 ~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l-~-~~~d~~~la~~i~~ll~~~~~~~~~ 431 (499)
T 2r60_A 374 APVEAMASGLPAVVTRNGGPAEILDGGKYGVL-V-DPEDPEDIARGLLKAFESEETWSAY 431 (499)
T ss_dssp HHHHHHHTTCCEEEESSBHHHHHTGGGTSSEE-E-CTTCHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHcCCCEEEecCCCHHHHhcCCceEEE-e-CCCCHHHHHHHHHHHHhCHHHHHHH
Confidence 688999999766665544455666421 2343 3 4468999999999999999877654
No 12
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=35.65 E-value=41 Score=31.64 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=38.0
Q ss_pred HHHHHHhcCeeEEEECCCCcccccCC-CCCceeecCCCCHHHHHHHHHHHhcCHHHHHHh
Q 038682 162 KFFQALVAGSVPVVVGAPNIQDFAPS-PKSILHIREREDVKSVAKTMKYLAENPEAYNQS 220 (382)
Q Consensus 162 K~~~al~~g~VPIv~G~~n~~~~~P~-p~SfI~v~dF~s~~eLA~yL~~L~~n~~~Y~~y 220 (382)
++.+|+.+|+-.|....+...+++-. .+.++ +. ++++||+-|..+.+|++.+.++
T Consensus 331 ~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l-~~---d~~~la~~i~~ll~~~~~~~~~ 386 (416)
T 2x6q_A 331 TVTEAMWKGKPVIGRAVGGIKFQIVDGETGFL-VR---DANEAVEVVLYLLKHPEVSKEM 386 (416)
T ss_dssp HHHHHHHTTCCEEEESCHHHHHHCCBTTTEEE-ES---SHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHcCCCEEEccCCCChhheecCCCeEE-EC---CHHHHHHHHHHHHhCHHHHHHH
Confidence 78899999975555444444555531 23333 33 7999999999999999887665
No 13
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=33.63 E-value=13 Score=25.09 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=14.6
Q ss_pred cCCCCHHHHHHHHHHHh
Q 038682 195 REREDVKSVAKTMKYLA 211 (382)
Q Consensus 195 ~dF~s~~eLA~yL~~L~ 211 (382)
.|+.++++||+|+..|.
T Consensus 9 g~~a~pEela~Y~~~Lr 25 (37)
T 1f8p_A 9 GEDAPAEDLARYYSALR 25 (37)
T ss_dssp CSSCTTTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47789999999998883
No 14
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=30.23 E-value=14 Score=25.40 Aligned_cols=17 Identities=0% Similarity=0.075 Sum_probs=15.0
Q ss_pred cCCCCHHHHHHHHHHHh
Q 038682 195 REREDVKSVAKTMKYLA 211 (382)
Q Consensus 195 ~dF~s~~eLA~yL~~L~ 211 (382)
.-|+|+++|-+||+.|+
T Consensus 12 ~~F~s~~~l~~YL~~Ln 28 (40)
T 1k8v_A 12 LVLDNKAALRDYLRQIN 28 (40)
T ss_dssp CSCSSCSHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHH
Confidence 46899999999999994
No 15
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=25.51 E-value=79 Score=30.44 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=38.3
Q ss_pred HHHHHHhcCeeEEEECCCCcccccCCC----------CCceeecCCCCHHHHHHHHHHHh---cCHHHHHHh
Q 038682 162 KFFQALVAGSVPVVVGAPNIQDFAPSP----------KSILHIREREDVKSVAKTMKYLA---ENPEAYNQS 220 (382)
Q Consensus 162 K~~~al~~g~VPIv~G~~n~~~~~P~p----------~SfI~v~dF~s~~eLA~yL~~L~---~n~~~Y~~y 220 (382)
++.+|+.+|+-.|.-..+...+++... +.++ + +-.++++||+-|..|. +|++.+.+.
T Consensus 382 ~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l-~-~~~d~~~la~~i~~ll~~~~~~~~~~~~ 451 (485)
T 2qzs_A 382 TQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFV-F-EDSNAWSLLRAIRRAFVLWSRPSLWRFV 451 (485)
T ss_dssp HHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEE-E-CSSSHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCccceeccCccccccccccceEE-E-CCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 477889999766655444455555411 2333 3 4457999999999988 788877665
No 16
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=24.40 E-value=57 Score=30.41 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=45.6
Q ss_pred hhhccceeEEeeecCCCCccchHHHHHHHhcCeeEEEECCCCcccccCCCCCceeecCCCCHHHHHHHHHHHhc-CHHHH
Q 038682 139 ETLKRYKFSLAFENSNEEDYVTEKFFQALVAGSVPVVVGAPNIQDFAPSPKSILHIREREDVKSVAKTMKYLAE-NPEAY 217 (382)
Q Consensus 139 e~l~~YKFyLAfENs~c~DYVTEK~~~al~~g~VPIv~G~~n~~~~~P~p~SfI~v~dF~s~~eLA~yL~~L~~-n~~~Y 217 (382)
+.++.....+.-= ..+. .-=++.+|+.+|+-.|.-..+...+++-..+.+ -+ +..++++||+-|..+.+ |++.+
T Consensus 326 ~~~~~adv~v~ps--~~e~-~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~~g~-~~-~~~d~~~la~~i~~ll~~~~~~~ 400 (439)
T 3fro_A 326 ELYGSVDFVIIPS--YFEP-FGLVALEAMCLGAIPIASAVGGLRDIITNETGI-LV-KAGDPGELANAILKALELSRSDL 400 (439)
T ss_dssp HHHTTCSEEEECB--SCCS-SCHHHHHHHHTTCEEEEESSTHHHHHCCTTTCE-EE-CTTCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHCCEEEeCC--CCCC-ccHHHHHHHHCCCCeEEcCCCCcceeEEcCceE-Ee-CCCCHHHHHHHHHHHHhcCHHHH
Confidence 4455555444321 1222 224688999999655554444556666312333 23 45689999999999877 76655
Q ss_pred HHh
Q 038682 218 NQS 220 (382)
Q Consensus 218 ~~y 220 (382)
.+.
T Consensus 401 ~~~ 403 (439)
T 3fro_A 401 SKF 403 (439)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 17
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=24.33 E-value=89 Score=30.05 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=39.0
Q ss_pred HHHHHHhcCeeEEEECCCCcccccCCC----------CCceeecCCCCHHHHHHHHHHHh---cCHHHHHHh
Q 038682 162 KFFQALVAGSVPVVVGAPNIQDFAPSP----------KSILHIREREDVKSVAKTMKYLA---ENPEAYNQS 220 (382)
Q Consensus 162 K~~~al~~g~VPIv~G~~n~~~~~P~p----------~SfI~v~dF~s~~eLA~yL~~L~---~n~~~Y~~y 220 (382)
++.+|+.+|+-.|.-..+...+++-.. +.++ + +-.++++||+-|..|. +|++.+.+.
T Consensus 381 ~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l-~-~~~d~~~la~~i~~ll~~~~~~~~~~~~ 450 (485)
T 1rzu_A 381 TQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQ-F-SPVTLDGLKQAIRRTVRYYHDPKLWTQM 450 (485)
T ss_dssp HHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEE-E-SSCSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceE-e-CCCCHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 577889999766665544455555411 2333 3 4457999999999988 788877665
No 18
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=21.57 E-value=1.8e+02 Score=24.12 Aligned_cols=75 Identities=9% Similarity=0.233 Sum_probs=45.1
Q ss_pred hhhccceeEEee--ecCCCCccchHHHHHHHhc------CeeEEEECCC--CcccccCCCCCceeec-CCCCHHHHHHHH
Q 038682 139 ETLKRYKFSLAF--ENSNEEDYVTEKFFQALVA------GSVPVVVGAP--NIQDFAPSPKSILHIR-EREDVKSVAKTM 207 (382)
Q Consensus 139 e~l~~YKFyLAf--ENs~c~DYVTEK~~~al~~------g~VPIv~G~~--n~~~~~P~p~SfI~v~-dF~s~~eLA~yL 207 (382)
+.|.+-+..|++ +|...-.++.+.+-.++.. -.|||.++-. ++...-|.-+....++ ...+++++|+.|
T Consensus 69 ~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~~~~~~ia~~l 148 (154)
T 3h16_A 69 KGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTSTKSVDEIVADL 148 (154)
T ss_dssp HHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTTSCHHHHHHHH
T ss_pred HHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCcccHHHHHHHH
Confidence 456555655444 5555566776666666542 4899999853 4444333222222222 466899999999
Q ss_pred HHHhcC
Q 038682 208 KYLAEN 213 (382)
Q Consensus 208 ~~L~~n 213 (382)
..|-+|
T Consensus 149 ~~lvr~ 154 (154)
T 3h16_A 149 MAIIRD 154 (154)
T ss_dssp HHHHC-
T ss_pred HHHhcC
Confidence 988653
No 19
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=21.57 E-value=1.2e+02 Score=28.29 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=36.5
Q ss_pred HHHHHHhcCeeEEEECCCCcccccCCCC----------------Cc--eeecCCCCHHHHHHHHHHHhcCHHHHHHhh
Q 038682 162 KFFQALVAGSVPVVVGAPNIQDFAPSPK----------------SI--LHIREREDVKSVAKTMKYLAENPEAYNQSL 221 (382)
Q Consensus 162 K~~~al~~g~VPIv~G~~n~~~~~P~p~----------------Sf--I~v~dF~s~~eLA~yL~~L~~n~~~Y~~yf 221 (382)
.+.+|+.+|+-.|.-..+...+++.... .+ +- +-.++++||+-| .|.+|++.+.+.-
T Consensus 289 ~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~--~~~d~~~la~~i-~l~~~~~~~~~~~ 363 (413)
T 3oy2_A 289 CSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIE--GIIDVDDLVEAF-TFFKDEKNRKEYG 363 (413)
T ss_dssp HHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEE--EECCHHHHHHHH-HHTTSHHHHHHHH
T ss_pred HHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceee--CCCCHHHHHHHH-HHhcCHHHHHHHH
Confidence 6788999996444433333445553111 22 21 224899999999 9999998877653
No 20
>1jb0_D Photosystem 1 reaction centre subunit II; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.187.1.1 PDB: 3pcq_D*
Probab=21.21 E-value=31 Score=29.36 Aligned_cols=16 Identities=50% Similarity=0.735 Sum_probs=13.4
Q ss_pred CCcceEEEEecCchhh
Q 038682 335 EDELKIYRIHPVGLTQ 350 (382)
Q Consensus 335 ~~~~~~~~~~~~~~~~ 350 (382)
..+.|||||||-|=+|
T Consensus 77 I~dykiYRifP~Ge~~ 92 (138)
T 1jb0_D 77 INDYKIYRIFPDGETV 92 (138)
T ss_dssp CCCCEEEEECTTCCEE
T ss_pred cccceEEEEcCCCceE
Confidence 5689999999988665
Done!