BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038683
(561 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 452 GEFKWKDYCPLVFRTLRKLFKVDSADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMI 511
FK+K+YCP+VFR LR+ F +D DY S+ + + S G+ G+ F T D R++I
Sbjct: 91 SRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINS-DSQGRCGTRFLTTYDRRFVI 149
Query: 512 KTIKKSEVKVLIRMLPAYYNH-VRAHENTLVIKFFGLHCVKLTG 554
KT+ +V + +L Y+ V H NTL+ +F G++ + + G
Sbjct: 150 KTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDG 193
>pdb|2YBX|A Chain A, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
Length = 394
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 5/156 (3%)
Query: 400 LMLNLQLGIRHSVARPGPAASLDLKASAFDPKEKVWTKFPPEGSKHTPPHPSGEFKWKDY 459
L+ L G+ HS+ + + + K ++K + + FK+K+Y
Sbjct: 26 LLSVLMWGVNHSI---NELSHVQIPVMLMPDDFKAYSKIKVDNHLFNKENMPSHFKFKEY 82
Query: 460 CPLVFRTLRKLFKVDSADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTIKKSEV 519
CP+VFR LR+ F +D D+ S+ + L S +SG+ F+ + D RY+IKTI +V
Sbjct: 83 CPMVFRNLRERFGIDDQDFQNSLTRSAPLPN-DSQARSGARFHTSYDKRYIIKTITSEDV 141
Query: 520 KVLIRMLPAYYNH-VRAHENTLVIKFFGLHCVKLTG 554
+ +L Y+ + V H TL+ +F G++ + + G
Sbjct: 142 AEMHNILKKYHQYIVECHGITLLPQFLGMYRLNVDG 177
>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
Length = 392
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 407 GIRHSVAR----PGPAASL--DLKASAFDPKEKVWTKFPPEGSKHTPPHPSGEFKWKDYC 460
G+ HS+ P P L D KAS+ K+ ++ P H FK+K+YC
Sbjct: 25 GVAHSINELSQVPPPVMLLPDDFKASS-----KIKVNNHLFHRENLPSH----FKFKEYC 75
Query: 461 PLVFRTLRKLFKVDSADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTIKKSEVK 520
P VFR LR F +D DY++S+ N S G+ F ++ D +IK + ++
Sbjct: 76 PQVFRNLRDRFGIDDQDYLVSLTRNPPSESEGSDGR----FLISYDRTLVIKEVSSEDIA 131
Query: 521 VLIRMLPAYYNH-VRAHENTLVIKFFGLHCVKL 552
+ L Y+ + V+ H NTL+ +F G++ V +
Sbjct: 132 DMHSNLSNYHQYIVKCHGNTLLPQFLGMYRVSV 164
>pdb|1G0D|A Chain A, Crystal Structure Of Red Sea Bream Transglutaminase
Length = 695
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 38 ADDDNEVDPEHNNNKPASLGETYLADKILPNGD--YYTGQWYENFPNGLGKYLWTDGCMY 95
A ++E+D EH ++ P +G T A + NGD TG+W E + +G+ Y WT
Sbjct: 198 ALKNSEMDIEHRSD-PVYVGRTITA-MVNSNGDRGVLTGRWEEPYTDGVAPYRWTGSVPI 255
Query: 96 VGEWHRG 102
+ +W +
Sbjct: 256 LQQWSKA 262
>pdb|3K44|A Chain A, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
pdb|3K44|B Chain B, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
pdb|3K44|C Chain C, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
pdb|3K44|D Chain D, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
Length = 146
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 360 DLLASVDDGNPKWSPLQPLKLPRPGKRQGETISKDHKNYELMLNLQ-----LGIRHSVAR 414
D L+S D P LP GK + E + KD++ Y L L L + ++ R
Sbjct: 56 DHLSSFSDYYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITR 115
Query: 415 PGPAASLDLKASA 427
GP + + L A
Sbjct: 116 GGPRSQIALPAQG 128
>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CD9|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CDA|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
pdb|2CDA|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
Length = 366
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 263 PRSVYDVDLSGCEVNDVDGEKLSVLPSQKRLAMWSSSKNDDKARRMSVDGRVSVGI 318
P+S+ D+ + + D++ +L QKR+ +W+ R++ V G +G+
Sbjct: 139 PKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGV 194
>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDC|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
Length = 366
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 263 PRSVYDVDLSGCEVNDVDGEKLSVLPSQKRLAMWSSSKNDDKARRMSVDGRVSVGI 318
P+S+ D+ + + D++ +L QKR+ +W+ R++ V G +G+
Sbjct: 139 PKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGV 194
>pdb|1H3I|A Chain A, Crystal Structure Of The Histone Methyltransferase Set79
pdb|1H3I|B Chain B, Crystal Structure Of The Histone Methyltransferase Set79
Length = 293
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 88 LWTDGCMYVGEWHRGKTMGKGRFSWPSGATYEGEFKSGFMDGIGTYTGSNGD-TYRGQWV 146
+ DG G + G+G +++ G +G + G ++G ++G ++GQ+
Sbjct: 1 FFFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYK 60
Query: 147 MNLKHGHGVKSYANGDCYDGE 167
N++HG Y +G GE
Sbjct: 61 DNIRHGVCWIYYPDGGSLVGE 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.136 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,382,010
Number of Sequences: 62578
Number of extensions: 1133722
Number of successful extensions: 1573
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1556
Number of HSP's gapped (non-prelim): 20
length of query: 561
length of database: 14,973,337
effective HSP length: 104
effective length of query: 457
effective length of database: 8,465,225
effective search space: 3868607825
effective search space used: 3868607825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)