Query 038683
Match_columns 561
No_of_seqs 486 out of 2237
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 13:34:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03185 phosphatidylinositol 100.0 7E-103 1E-107 875.9 48.3 480 62-555 1-505 (765)
2 KOG0229 Phosphatidylinositol-4 100.0 1.8E-50 3.9E-55 420.8 15.5 175 381-555 25-200 (420)
3 cd00139 PIPKc Phosphatidylinos 100.0 3.6E-41 7.7E-46 348.6 17.6 154 397-553 1-156 (313)
4 PLN03185 phosphatidylinositol 100.0 3.6E-37 7.7E-42 346.5 20.8 190 59-250 21-213 (765)
5 smart00330 PIPKc Phosphatidyli 100.0 6.1E-32 1.3E-36 283.2 15.5 130 424-555 1-130 (342)
6 COG5253 MSS4 Phosphatidylinosi 99.9 4E-26 8.8E-31 240.2 6.6 154 383-555 281-434 (612)
7 PF01504 PIP5K: Phosphatidylin 99.8 6.1E-20 1.3E-24 185.8 7.8 75 480-554 1-75 (252)
8 COG4642 Uncharacterized protei 99.8 4.1E-18 8.9E-23 153.4 12.8 131 115-245 8-138 (139)
9 KOG0231 Junctional membrane co 99.8 8.9E-19 1.9E-23 190.5 9.2 189 64-254 116-319 (455)
10 KOG0231 Junctional membrane co 99.8 1.4E-18 3.1E-23 188.9 8.8 186 58-243 131-332 (455)
11 COG4642 Uncharacterized protei 99.8 3.7E-18 8E-23 153.7 9.8 131 92-222 8-138 (139)
12 KOG0230 Phosphatidylinositol-4 99.7 2.9E-17 6.3E-22 190.9 8.6 105 452-559 1324-1433(1598)
13 COG2849 Uncharacterized protei 98.5 5.4E-06 1.2E-10 83.3 17.7 206 59-265 14-228 (230)
14 COG2849 Uncharacterized protei 98.1 7.2E-05 1.6E-09 75.2 15.8 122 120-241 102-228 (230)
15 smart00698 MORN Possible plasm 97.2 0.00055 1.2E-08 45.4 3.9 22 209-230 2-23 (26)
16 smart00698 MORN Possible plasm 97.1 0.0008 1.7E-08 44.6 4.1 21 71-91 2-22 (26)
17 PF02493 MORN: MORN repeat; I 97.0 0.00062 1.3E-08 43.4 2.8 21 95-115 1-21 (23)
18 PF02493 MORN: MORN repeat; I 97.0 0.00069 1.5E-08 43.2 2.9 22 72-93 1-22 (23)
19 PF14977 FAM194: FAM194 protei 66.8 44 0.00096 33.4 9.6 92 157-261 10-103 (208)
20 PF07202 Tcp10_C: T-complex pr 41.1 3.5E+02 0.0076 26.4 13.6 8 201-208 122-129 (179)
21 PF12226 Astro_capsid_p: Turke 40.0 13 0.00028 35.8 0.9 49 456-512 102-153 (230)
22 PF14977 FAM194: FAM194 protei 35.8 2.1E+02 0.0045 28.7 8.6 68 180-255 10-79 (208)
23 PF07661 MORN_2: MORN repeat v 28.9 35 0.00075 20.7 1.3 11 221-231 3-13 (22)
24 PF07202 Tcp10_C: T-complex pr 27.9 5.8E+02 0.013 24.9 15.3 70 102-186 61-130 (179)
25 PF12653 DUF3785: Protein of u 24.3 46 0.00099 30.6 1.6 27 500-526 80-107 (138)
26 PF10411 DsbC_N: Disulfide bon 23.9 60 0.0013 25.3 2.1 22 488-511 25-46 (57)
27 PRK10345 hypothetical protein; 21.1 1.4E+02 0.003 29.5 4.5 57 492-551 10-73 (210)
28 PF06296 DUF1044: Protein of u 20.6 4.1E+02 0.0089 24.2 7.1 76 458-533 3-104 (120)
29 smart00653 eIF2B_5 domain pres 20.2 3.9E+02 0.0084 23.9 6.7 75 464-551 24-103 (110)
No 1
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=6.9e-103 Score=875.90 Aligned_cols=480 Identities=47% Similarity=0.884 Sum_probs=392.9
Q ss_pred EEEEecCCCEEEEEEECCeEeeeEEEEEcCCcEEEEEEECCeEeeeEEEEeCCCCeEEEEEeCCeEeeEEEEEecCCCEE
Q 038683 62 ADKILPNGDYYTGQWYENFPNGLGKYLWTDGCMYVGEWHRGKTMGKGRFSWPSGATYEGEFKSGFMDGIGTYTGSNGDTY 141 (561)
Q Consensus 62 ~~~~~~nG~~Y~G~~~~g~~~G~G~~~~~dG~~YeG~w~nGk~~G~G~~~~~nG~~YeG~f~ng~~~G~G~~~~~dG~~Y 141 (561)
|++.|+||++|+|+|.++++||.|++.|+||++|+|+|++|++||.|++.|++|.+|+|+|.+|++||.|++++++|.+|
T Consensus 1 Ge~~~~nGd~Y~Ge~~~g~~hG~G~~~~~DG~~YeGew~~Gk~hG~G~~~~~nG~~YeGeF~nG~~hG~G~~~~~~G~~Y 80 (765)
T PLN03185 1 GELVLSNGDFYSGSLLGNVPEGPGKYLWSDGCMYEGEWRRGMRHGNGKISWPSGATYEGEFSGGYMHGSGTYTGTDGTTY 80 (765)
T ss_pred CeEEecCCCEEEEEEECCccccceEEEECCCCEEEEEEECCEeeCcEeEEeCCCCEEEEEEECCEEeceEEEEecCCCEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeecccceEeeCCCCccccceecCeeecceEEEecCCceEEEEEecCeEeeeEEEEEcCCCEEEEEEeCCeeee
Q 038683 142 RGQWVMNLKHGHGVKSYANGDCYDGEWRCGMQEGQGKYNWKNGNYYIGEWRKGGIFGKGTFVWSNGNTYDGYWEDGMPKG 221 (561)
Q Consensus 142 ~G~w~ng~~~G~G~~~~~nG~~Y~G~wk~G~~~G~G~~~~~nG~~Y~G~wknG~~~G~G~~~~~nG~~Y~G~w~nG~~~G 221 (561)
+|+|++|++||.|++.|+||++|+|+|++|+++|.|+|.|+||++|+|+|++|++||.|+++|+||++|+|+|.||++||
T Consensus 81 eG~w~~gkkhG~G~~~y~nG~vYeG~wk~G~~~G~G~y~~~nG~~Y~Gefk~Gk~~G~G~l~~~nG~~YeG~w~nG~~hG 160 (765)
T PLN03185 81 KGRWRLNLKHGLGYQRYPNGDVFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGKGTLTWVSGDSYEGQWLDGMMHG 160 (765)
T ss_pred EEEEeCCcccceeEEEEecchhhhhhhhcCceecceeeeccCCCeEEEEecCCEEecCEEEEEeCCCeEEEEEeCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCEEEEEEeCCCCccceEEEeCCCCCc--cccccCCCceeeeeCCCceeccc-----CCcccccc------c
Q 038683 222 NGTFKWPDDSFYVGNWSKDPNEQNGTYFPSETSPE--ENQDWDPRSVYDVDLSGCEVNDV-----DGEKLSVL------P 288 (561)
Q Consensus 222 ~G~~~~~dG~~Y~G~w~ng~~~G~G~~y~~~G~~~--~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~------~ 288 (561)
.|+++|+||.+|+|+|.+|+++|.|+||++ |+.. ..+.|.+.-.-...+++.+-... ..++.+.- .
T Consensus 161 ~G~y~~~DG~~Y~G~W~~G~~~G~G~~y~~-G~~~p~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (765)
T PLN03185 161 FGVYTWSDGGCYVGTWTRGLKDGKGVFYPA-GSRVPAVQEFYLNALRKRGVLPDLRRQNQVLSSHNSEQLSRGVSSDKLS 239 (765)
T ss_pred eEEEEECCCCEEEEEeeCCceEeEEEEEEC-CCcccccchhhhhcccccccccchhhccccccccccccccccccccccc
Confidence 999999999999999999999999999875 4432 22334433333333443211100 00000000 0
Q ss_pred hhhhhh-hccCCCCCccccccccCCceeecccCCCcc-cccccccccCccc-----CCCCCcccccccccccccCCCCce
Q 038683 289 SQKRLA-MWSSSKNDDKARRMSVDGRVSVGIERPFDK-LQIWDNATAGAVT-----GDGCDVNVVGDRENVGRISDGGDL 361 (561)
Q Consensus 289 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 361 (561)
+++.++ .|+..+ .++...+|+ ++++.++ +++..+.....++ ++.....+|+|||++ ||||
T Consensus 240 ~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 306 (765)
T PLN03185 240 KGSLLPLEQSRNR------NVSLERRWS--LEVSIEKVIGHDYSGSSSAVLDEGSEVEYKANRPILEREYM-----QGVL 306 (765)
T ss_pred ccccccccccccc------ccccccccc--ccCcccceecccccccccccccchhhccccccccccchhhh-----ccee
Confidence 111100 011111 111112222 1222222 3333221011111 111122468999999 9998
Q ss_pred eccccCCC--CCCCCCCCCCC---CCCCCCCCceeccccchhHHHHHHHHhHhhhhccCCCCcCccccccCCCCcceeEe
Q 038683 362 LASVDDGN--PKWSPLQPLKL---PRPGKRQGETISKDHKNYELMLNLQLGIRHSVARPGPAASLDLKASAFDPKEKVWT 436 (561)
Q Consensus 362 ~~~~~~~~--~~~~~~~~~~~---~~~~~~~g~~i~~gh~~~~L~~~~~~GIr~si~~~~~~~~~~l~~~dF~~~~k~~~ 436 (561)
|.+-.... +++++.++.+. .++++++|++|++||+||+||++||+|||+||+++++.+.++|+++||++++++++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~gh~~~~l~~~~~~GIr~sv~~~~~~~~~~l~~~DF~~~~~~~~ 386 (765)
T PLN03185 307 ISELVLNNSFSSTSRRAKRRQKKLVKEIKRPGETIIKGHRSYDLMLSLQLGIRYTVGKITPIQRREVRPSDFGPRASFWM 386 (765)
T ss_pred eeeeecccccchhccccccccccchhhhcCCCcEEecCcCcHHHHHHHHHhHHHHhccccccCCccCChhhCcceEEEEE
Confidence 87433222 22223333222 25779999999999999999999999999999999998899999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCeEEEEeCHHHHHHHHHHcCCChhhHHHhhccCccccccCCCCCccceEEEeeCCcEEEEecCH
Q 038683 437 KFPPEGSKHTPPHPSGEFKWKDYCPLVFRTLRKLFKVDSADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTIKK 516 (561)
Q Consensus 437 ~f~~~gs~~tp~~~~~~f~~k~y~P~vF~~lR~~~~i~~~dy~~Sl~~~~~l~~~~s~GKSGs~F~~T~D~rfiIKTi~~ 516 (561)
.||++|++.||+|+..+|+||||||+|||+||++|+||++||+.|||++.+|+++.|+|||||+||+|+|+|||||||++
T Consensus 387 ~fp~~gs~~tp~h~~~~fkfkdY~P~vFr~LR~~fgId~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiIKTI~k 466 (765)
T PLN03185 387 NFPKAGSQLTPSHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRK 466 (765)
T ss_pred EcCcccCccCCCCccCceEEEEECHHHHHHHHHHhCCCHHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEEEecCH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcccceeeEEEEEEEcCc
Q 038683 517 SEVKVLIRMLPAYYNHVRAHENTLVIKFFGLHCVKLTGP 555 (561)
Q Consensus 517 ~E~~~l~~~Lp~Y~~h~~~np~TLL~k~~Gl~~ik~~~~ 555 (561)
+|+++|++|||+||+||..||+|||+||||||+|++.++
T Consensus 467 ~E~~~l~~iLp~Y~~hv~~n~~TLL~kf~Gl~~i~~~~g 505 (765)
T PLN03185 467 SEVKVLLRMLPDYHHHVKTYENTLITKFFGLHRIKPSSG 505 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcchhhheEEEEEEeCCC
Confidence 999999999999999999999999999999999998654
No 2
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-50 Score=420.77 Aligned_cols=175 Identities=60% Similarity=1.014 Sum_probs=169.1
Q ss_pred CCCCCCCCceeccccchhHHHHHHHHhHhhhhccCCCCcCccccccCCCCcceeEecCCCCCCCCCCCCCCCCeEEEEeC
Q 038683 381 PRPGKRQGETISKDHKNYELMLNLQLGIRHSVARPGPAASLDLKASAFDPKEKVWTKFPPEGSKHTPPHPSGEFKWKDYC 460 (561)
Q Consensus 381 ~~~~~~~g~~i~~gh~~~~L~~~~~~GIr~si~~~~~~~~~~l~~~dF~~~~k~~~~f~~~gs~~tp~~~~~~f~~k~y~ 460 (561)
.+..+.+|++|++||.||+||+|||||||++|+++++.+.++|.+.||.+++++++.||.+|++.||||...+|+|||||
T Consensus 25 ~~~~~~~g~~v~~~~~~~~l~~~lqlGI~~tVg~ls~v~~r~~~~~df~~~~k~~~~fp~~gs~~tp~h~~~~Fk~KdYc 104 (420)
T KOG0229|consen 25 KKHFVKQGEKVKKGHASYPLMLNLQLGIRHTVGSLSSVPERDLPVMDFPDVEKAYSKFPSEGSKFTPPHHSSDFKFKDYC 104 (420)
T ss_pred ccceeccCceEecccccHHHHHHHHhcchhhhcccccCCcccCchhhCchhhhhheecCCCCCccCCCCCccccchhhcC
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChhhHHHhhccCccccccCCCCCccceEEEeeCCcEEEEecCHHHHHHHHHHHHHHHHHHhcCCC-c
Q 038683 461 PLVFRTLRKLFKVDSADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTIKKSEVKVLIRMLPAYYNHVRAHEN-T 539 (561)
Q Consensus 461 P~vF~~lR~~~~i~~~dy~~Sl~~~~~l~~~~s~GKSGs~F~~T~D~rfiIKTi~~~E~~~l~~~Lp~Y~~h~~~np~-T 539 (561)
|+|||+||++||||++|||.|||+++++++++++|||||+||+|+|+|||||||+++|+++|++|||.||+|+.++++ |
T Consensus 105 P~vFR~lRelFgId~~DYl~Slc~~~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy~~v~~~~~~T 184 (420)
T KOG0229|consen 105 PMVFRNLRELFGIDPADYLLSLCGNPPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYYQHVVEQNNRT 184 (420)
T ss_pred hHHHHHHHHHhCCChHHHHHHHhcchhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHHHHHHccCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999886665 9
Q ss_pred ccceeeEEEEEEEcCc
Q 038683 540 LVIKFFGLHCVKLTGP 555 (561)
Q Consensus 540 LL~k~~Gl~~ik~~~~ 555 (561)
|||||||||||++.++
T Consensus 185 Ll~kf~Gly~vk~~gg 200 (420)
T KOG0229|consen 185 LLPKFFGLYRVKPDGG 200 (420)
T ss_pred eehhhceeEEEeeCCC
Confidence 9999999999999875
No 3
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=100.00 E-value=3.6e-41 Score=348.61 Aligned_cols=154 Identities=55% Similarity=0.920 Sum_probs=147.7
Q ss_pred hhHHHHHHHHhHhhhhccCCCCcC-ccccccCCCCcceeEecCCCCCCCCCCCCCCCCeEEEEeCHHHHHHHHHHcCCCh
Q 038683 397 NYELMLNLQLGIRHSVARPGPAAS-LDLKASAFDPKEKVWTKFPPEGSKHTPPHPSGEFKWKDYCPLVFRTLRKLFKVDS 475 (561)
Q Consensus 397 ~~~L~~~~~~GIr~si~~~~~~~~-~~l~~~dF~~~~k~~~~f~~~gs~~tp~~~~~~f~~k~y~P~vF~~lR~~~~i~~ 475 (561)
+|+||++||+|||+||+++++.+. ++|.++||.+++++. ||+.++..||+|...+|+|++|||.+|+.||++|||++
T Consensus 1 ~~~l~~~~~~Gi~~~v~~~~~~~~~~~l~~~Df~~~~~~~--~~~~~~~~~~~~~~~~f~fk~Y~P~vF~~lR~~~gi~~ 78 (313)
T cd00139 1 SYPLMSNLQLGIRHSVGELSSVPSPRDLLPDDFKAKSKIK--FPNHGSHLTPPHLSADFKFKDYCPEVFRALRELFGIDE 78 (313)
T ss_pred ChHHHHHHHHHHHHHhhhcccCCccccCchhhhhheEEEE--cCCCCCcccCCCCCccEEEEEeCHHHHHHHHHHcCCCH
Confidence 589999999999999999988766 899999999988886 99999999999999999999999999999999999999
Q ss_pred hhHHHhhccCccccccCCCCCccceEEEeeCCcEEEEecCHHHHHHHHHHHHHHHHHHhcCC-CcccceeeEEEEEEEc
Q 038683 476 ADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTIKKSEVKVLIRMLPAYYNHVRAHE-NTLVIKFFGLHCVKLT 553 (561)
Q Consensus 476 ~dy~~Sl~~~~~l~~~~s~GKSGs~F~~T~D~rfiIKTi~~~E~~~l~~~Lp~Y~~h~~~np-~TLL~k~~Gl~~ik~~ 553 (561)
+||+.|||+. .+.++.|+|||||+||+|+|+|||||||+++|+++|+++||+||+||.+|| +|||+||||||+|++.
T Consensus 79 ~dy~~Sl~~~-~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~~~~~~n~~~TLL~k~~Gl~~i~~~ 156 (313)
T cd00139 79 ADYLRSLCRS-PLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNYYEYITQNPQNTLLPKFFGLYRVKVK 156 (313)
T ss_pred HHHHHHhcCC-CCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHHHHHHHhCCCCcchhhheEEEEEEEc
Confidence 9999999965 488899999999999999999999999999999999999999999999999 9999999999999998
No 4
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=3.6e-37 Score=346.51 Aligned_cols=190 Identities=31% Similarity=0.706 Sum_probs=178.9
Q ss_pred ceeEEEEecCCCEEEEEEECCeEeeeEEEEEcCCcEEEEEEECCeEeeeEEEEeCCCCeEEEEEeCCeEeeEEEEEecCC
Q 038683 59 TYLADKILPNGDYYTGQWYENFPNGLGKYLWTDGCMYVGEWHRGKTMGKGRFSWPSGATYEGEFKSGFMDGIGTYTGSNG 138 (561)
Q Consensus 59 ~g~~~~~~~nG~~Y~G~~~~g~~~G~G~~~~~dG~~YeG~w~nGk~~G~G~~~~~nG~~YeG~f~ng~~~G~G~~~~~dG 138 (561)
.|.|.++++||.+|+|+|+++++||.|++.|++|.+|+|+|.+|++||.|++++++|.+|+|+|++|++||.|+++++||
T Consensus 21 hG~G~~~~~DG~~YeGew~~Gk~hG~G~~~~~nG~~YeGeF~nG~~hG~G~~~~~~G~~YeG~w~~gkkhG~G~~~y~nG 100 (765)
T PLN03185 21 EGPGKYLWSDGCMYEGEWRRGMRHGNGKISWPSGATYEGEFSGGYMHGSGTYTGTDGTTYKGRWRLNLKHGLGYQRYPNG 100 (765)
T ss_pred ccceEEEECCCCEEEEEEECCEeeCcEeEEeCCCCEEEEEEECCEEeceEEEEecCCCEEEEEEeCCcccceeEEEEecc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeeeecccceEeeCCCCccccceecCeeecceEEEecCCceEEEEEecCeEeeeEEEEEcCCCEEEEEEeCCe
Q 038683 139 DTYRGQWVMNLKHGHGVKSYANGDCYDGEWRCGMQEGQGKYNWKNGNYYIGEWRKGGIFGKGTFVWSNGNTYDGYWEDGM 218 (561)
Q Consensus 139 ~~Y~G~w~ng~~~G~G~~~~~nG~~Y~G~wk~G~~~G~G~~~~~nG~~Y~G~wknG~~~G~G~~~~~nG~~Y~G~w~nG~ 218 (561)
++|+|+|++|++||.|++.++||.+|+|+|++|+++|.|+++|+||+.|+|+|.+|++||.|+++|+||.+|+|.|.+|+
T Consensus 101 ~vYeG~wk~G~~~G~G~y~~~nG~~Y~Gefk~Gk~~G~G~l~~~nG~~YeG~w~nG~~hG~G~y~~~DG~~Y~G~W~~G~ 180 (765)
T PLN03185 101 DVFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGKGTLTWVSGDSYEGQWLDGMMHGFGVYTWSDGGCYVGTWTRGL 180 (765)
T ss_pred hhhhhhhhcCceecceeeeccCCCeEEEEecCCEEecCEEEEEeCCCeEEEEEeCCcceeeEEEEECCCCEEEEEeeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEEeCCCC---EEEEEEeCCCCccceEEEe
Q 038683 219 PKGNGTFKWPDDS---FYVGNWSKDPNEQNGTYFP 250 (561)
Q Consensus 219 ~~G~G~~~~~dG~---~Y~G~w~ng~~~G~G~~y~ 250 (561)
++|.|+++ ++|+ .+.+.|. +...+.|+...
T Consensus 181 ~~G~G~~y-~~G~~~p~~~~~~~-~~l~~~g~~~~ 213 (765)
T PLN03185 181 KDGKGVFY-PAGSRVPAVQEFYL-NALRKRGVLPD 213 (765)
T ss_pred eEeEEEEE-ECCCcccccchhhh-hcccccccccc
Confidence 99999985 6776 3556566 55555666554
No 5
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=99.97 E-value=6.1e-32 Score=283.17 Aligned_cols=130 Identities=54% Similarity=0.886 Sum_probs=122.7
Q ss_pred cccCCCCcceeEecCCCCCCCCCCCCCCCCeEEEEeCHHHHHHHHHHcCCChhhHHHhhccCccccccCCCCCccceEEE
Q 038683 424 KASAFDPKEKVWTKFPPEGSKHTPPHPSGEFKWKDYCPLVFRTLRKLFKVDSADYMLSICGNDALRELSSPGKSGSFFYL 503 (561)
Q Consensus 424 ~~~dF~~~~k~~~~f~~~gs~~tp~~~~~~f~~k~y~P~vF~~lR~~~~i~~~dy~~Sl~~~~~l~~~~s~GKSGs~F~~ 503 (561)
+++||++.+++++.++.. ++.+|+|+...|+|++|||.+|+.||+++||++++|+.|||+.. ++|+.++|||||+||+
T Consensus 1 ~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Y~P~~F~~lR~~~~i~~~~y~~Sl~~~~-~~~~~s~GKSGs~F~~ 78 (342)
T smart00330 1 LPSDFKATEKIKFPTPGH-LELTPSHGSADFKFKDYCPEVFRNLRELFGIDPADYLRSLCRSP-PLELSSGGKSGSFFYL 78 (342)
T ss_pred CccccccceeEeecCCCc-ccccCCCCCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhCCCC-ccccCCCCCCCCEEEE
Confidence 367999999999877777 79999999999999999999999999999999999999999654 3689999999999999
Q ss_pred eeCCcEEEEecCHHHHHHHHHHHHHHHHHHhcCCCcccceeeEEEEEEEcCc
Q 038683 504 TNDDRYMIKTIKKSEVKVLIRMLPAYYNHVRAHENTLVIKFFGLHCVKLTGP 555 (561)
Q Consensus 504 T~D~rfiIKTi~~~E~~~l~~~Lp~Y~~h~~~np~TLL~k~~Gl~~ik~~~~ 555 (561)
|+|+|||||||+++|+++|+++||.||+||..||+|||+||||||+|++.++
T Consensus 79 T~D~rfiiKti~~~E~~~l~~~lp~Y~~~~~~n~~SlL~ki~Gly~i~~~~~ 130 (342)
T smart00330 79 SLDDRFIIKTVSKSEIKSLLPMLPNYYEHIVQNPNTLLPKFFGLYRVKVKGG 130 (342)
T ss_pred ecCCcEEEEecCHHHHHHHHHHHHHHHHHHHhCCCcchhhhcEEEEEEECCC
Confidence 9999999999999999999999999999999999999999999999999776
No 6
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=99.92 E-value=4e-26 Score=240.23 Aligned_cols=154 Identities=36% Similarity=0.473 Sum_probs=125.5
Q ss_pred CCCCCCceeccccchhHHHHHHHHhHhhhhccCCCCcCccccccCCCCcceeEecCCCCCCCCCCCCCCCCeEEEEeCHH
Q 038683 383 PGKRQGETISKDHKNYELMLNLQLGIRHSVARPGPAASLDLKASAFDPKEKVWTKFPPEGSKHTPPHPSGEFKWKDYCPL 462 (561)
Q Consensus 383 ~~~~~g~~i~~gh~~~~L~~~~~~GIr~si~~~~~~~~~~l~~~dF~~~~k~~~~f~~~gs~~tp~~~~~~f~~k~y~P~ 462 (561)
++.--|-.|..||+|+....+|..|||.++.++..... ...|...++. |+.. ...|+||+|||.
T Consensus 281 e~~l~~~~le~gh~n~~~synmltgirvtlsr~e~iM~---~~tdth~~e~----~~eg---------~~~~s~K~y~~e 344 (612)
T COG5253 281 ERLLNGMPLEGGHRNPQESYNMLTGIRVTLSRIEEIMI---KKTDTHLNEQ----FEEG---------LYEFSCKDYFPE 344 (612)
T ss_pred hhhccccccccccccchhhhhhhhhhHHHHHHHHHHhc---CCcCccchhh----cccc---------ceeeeHHhhCHH
Confidence 44555667889999999999999999999988843222 2123322221 2221 257999999999
Q ss_pred HHHHHHHHcCCChhhHHHhhccCccccccCCCCCccceEEEeeCCcEEEEecCHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 038683 463 VFRTLRKLFKVDSADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTIKKSEVKVLIRMLPAYYNHVRAHENTLVI 542 (561)
Q Consensus 463 vF~~lR~~~~i~~~dy~~Sl~~~~~l~~~~s~GKSGs~F~~T~D~rfiIKTi~~~E~~~l~~~Lp~Y~~h~~~np~TLL~ 542 (561)
+||.||.+||++++ + .++.....|.| ..+||||||||+|.|.|||||||+++|+.+|+.++-.||.|+..||+||||
T Consensus 345 ~Fr~lR~l~g~~~a-l-vsl~sryil~E-~~~GKSGSff~~trD~kfIiKti~hsE~~~~r~~~~eY~~~V~~np~T~l~ 421 (612)
T COG5253 345 VFRELRALCGCDEA-L-VSLLSRYILWE-SNGGKSGSFFLFTRDYKFIIKTISHSEHICFRPMIFEYYVHVLFNPLTLLC 421 (612)
T ss_pred HHHHHHHHhCCcHH-H-HHHHhhhheec-cCCCcccceEEEeccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCchHHHH
Confidence 99999999999999 4 45554444544 459999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEEcCc
Q 038683 543 KFFGLHCVKLTGP 555 (561)
Q Consensus 543 k~~Gl~~ik~~~~ 555 (561)
||||+|+|++...
T Consensus 422 ki~G~yrv~~~~s 434 (612)
T COG5253 422 KIFGFYRVKSRSS 434 (612)
T ss_pred HHhceeEEecccc
Confidence 9999999999874
No 7
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=99.80 E-value=6.1e-20 Score=185.82 Aligned_cols=75 Identities=47% Similarity=0.883 Sum_probs=54.2
Q ss_pred HhhccCccccccCCCCCccceEEEeeCCcEEEEecCHHHHHHHHHHHHHHHHHHhcCCCcccceeeEEEEEEEcC
Q 038683 480 LSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTIKKSEVKVLIRMLPAYYNHVRAHENTLVIKFFGLHCVKLTG 554 (561)
Q Consensus 480 ~Sl~~~~~l~~~~s~GKSGs~F~~T~D~rfiIKTi~~~E~~~l~~~Lp~Y~~h~~~np~TLL~k~~Gl~~ik~~~ 554 (561)
+|||..+++++..++|||||+||+|+|+|||||||+++|+++|+++||+||+||.+||+|||+||||||+|+..+
T Consensus 1 ~sl~~~~~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~~~l~~~lp~Y~~~~~~~~~SlL~r~~Gl~~i~~~~ 75 (252)
T PF01504_consen 1 MSLCNLSSLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEFKFLLKILPAYFEHMSENPNSLLPRFYGLYSIKKSN 75 (252)
T ss_dssp ----------ES---SSSSS-EEE-TTSSEEEEEE-HHHHHHHHHHHHHHHHHHHHTTTSSS--EEEEEEE-EET
T ss_pred CCccccccccccCCCCCccCEEEEeCCCCEEEEeCCHHHHHHHHHHHHHHHHHHHhCcCchHHHHHHHheecccC
Confidence 489988899999999999999999999999999999999999999999999999999999999999999996443
No 8
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.77 E-value=4.1e-18 Score=153.38 Aligned_cols=131 Identities=32% Similarity=0.538 Sum_probs=96.9
Q ss_pred CCeEEEEEeCCeEeeEEEEEecCCCEEEEEEEeeeecccceEeeCCCCccccceecCeeecceEEEecCCceEEEEEecC
Q 038683 115 GATYEGEFKSGFMDGIGTYTGSNGDTYRGQWVMNLKHGHGVKSYANGDCYDGEWRCGMQEGQGKYNWKNGNYYIGEWRKG 194 (561)
Q Consensus 115 G~~YeG~f~ng~~~G~G~~~~~dG~~Y~G~w~ng~~~G~G~~~~~nG~~Y~G~wk~G~~~G~G~~~~~nG~~Y~G~wknG 194 (561)
+..|++.|..++..|.+++..+++.++.|..++++..|.|...+.||.+|+|.+++++++|.|++.++|+++|+|.|+++
T Consensus 8 g~~y~~~~~~g~~~g~s~~~~~~car~~g~~kqg~~~Gkgs~~~~~G~~Y~Gtl~ngk~nGqG~~~~~ngd~Y~g~F~s~ 87 (139)
T COG4642 8 GLRYEGFFVRGKLEGLSTYDILGCARVGGSLKQGKLAGKGSLKYDNGRIYTGTLKNGKMNGQGTYTFANGDIYEGPFNSG 87 (139)
T ss_pred heeeeeEEecccccccceEEeccccEEeeeEeeeecCCCccEEEcCCccccceEEcCcccCcEEEEecCCCeEeccccCc
Confidence 44566666666666666666666666666777777777777777777777777777777777777777777777777777
Q ss_pred eEeeeEEEEEcCCCEEEEEEeCCeeeeeEEEEeCCCCEEEEEEeCCCCccc
Q 038683 195 GIFGKGTFVWSNGNTYDGYWEDGMPKGNGTFKWPDDSFYVGNWSKDPNEQN 245 (561)
Q Consensus 195 ~~~G~G~~~~~nG~~Y~G~w~nG~~~G~G~~~~~dG~~Y~G~w~ng~~~G~ 245 (561)
+.+|.|+....+|..|.|.|.+|+..|+|.+...||.+|.|.|+.+++++.
T Consensus 88 ~F~g~G~~~~~~Gw~~~G~F~~Gq~~g~g~l~~~~g~vy~G~fk~g~f~~~ 138 (139)
T COG4642 88 KFRGQGTRGSFNGWLYIGRFTEGQANGKGFLLKEDGSVYTGMFKQGRFPKN 138 (139)
T ss_pred cccceEeeccccCCEEeeeecccccCCceeEEecCCcEEeeeEEeeecCCC
Confidence 777777777777777777777777777777777777777777777776654
No 9
>KOG0231 consensus Junctional membrane complex protein Junctophilin and related MORN repeat proteins [General function prediction only]
Probab=99.76 E-value=8.9e-19 Score=190.52 Aligned_cols=189 Identities=28% Similarity=0.488 Sum_probs=155.8
Q ss_pred EEecCCCEEEEEEECCeEeeeEEEEEcCCcEEEEEEECCeEeeeEEEEeCCCCeEEEEEeCCeEeeEEEEEecCCCEEEE
Q 038683 64 KILPNGDYYTGQWYENFPNGLGKYLWTDGCMYVGEWHRGKTMGKGRFSWPSGATYEGEFKSGFMDGIGTYTGSNGDTYRG 143 (561)
Q Consensus 64 ~~~~nG~~Y~G~~~~g~~~G~G~~~~~dG~~YeG~w~nGk~~G~G~~~~~nG~~YeG~f~ng~~~G~G~~~~~dG~~Y~G 143 (561)
..-++...|.+.. +...|.|...++++++|+|+|.+++++|.|...+++|..|+|+|.++++||+|++++++|..|+|
T Consensus 116 ~~~~~~~~~~~~~--~~~~g~g~~~~~~g~~Y~G~~~~~k~sG~Gv~~~~~G~~Y~Gew~~n~~hG~G~~~~pdGsk~eg 193 (455)
T KOG0231|consen 116 LLSTDSGGEEGEE--GTRSGEGVIELPTGDTYEGEFKRGKRSGFGVYIRSDGLKYEGEWLDNRRHGYGVLTFPDGSKYEG 193 (455)
T ss_pred eecCCcccccccc--cccCccceEecCCCCEEEeeecCCcccccceEEecCCCEeeceecCCCccCCCeEEccCCCEEEE
Confidence 3334444444444 66777777778888888888888888888888888888888888888888888888888888888
Q ss_pred EEEee----eecccceEeeCC----------CCccccceec-CeeecceEEEecCCceEEEEEecCeEeeeEEEEEcCCC
Q 038683 144 QWVMN----LKHGHGVKSYAN----------GDCYDGEWRC-GMQEGQGKYNWKNGNYYIGEWRKGGIFGKGTFVWSNGN 208 (561)
Q Consensus 144 ~w~ng----~~~G~G~~~~~n----------G~~Y~G~wk~-G~~~G~G~~~~~nG~~Y~G~wknG~~~G~G~~~~~nG~ 208 (561)
+|+++ .+||.+.+.+.+ .++|.++|.. ++.++.+.+...+|..|.+.|..+..+|.+.+.+.++.
T Consensus 194 ~~~~~~l~~l~~gk~~~~~~~~~~~a~ra~~~~~~~~Ew~~~~~~~~~~~~e~~~g~~~~~~~~~~~~~g~~~~~~~~~~ 273 (455)
T KOG0231|consen 194 QYKNNILEALRHGKGRYKFDDALEAAQRAATIARYSGEWAARGQSHGRGYAEAADGSAYAGQEDAGVARGLAKLHFPNGS 273 (455)
T ss_pred EeecccccccccceEEEEEeccchhhhhhhhhhhhhhhhhhhcCCCcceeEEeccccchhhhhhcCccccccceeccccc
Confidence 88888 788888887775 6789999988 88899999999999889999999999999999999998
Q ss_pred EEEEEEeCCeeeeeEEEEeCCCCEEEEEEeCCCCccceEEEeCCCC
Q 038683 209 TYDGYWEDGMPKGNGTFKWPDDSFYVGNWSKDPNEQNGTYFPSETS 254 (561)
Q Consensus 209 ~Y~G~w~nG~~~G~G~~~~~dG~~Y~G~w~ng~~~G~G~~y~~~G~ 254 (561)
.|.|.|..+.++|.+++.+.++..+++.|..+.+.|.+.+...++.
T Consensus 274 ~~~g~~~~~~~~g~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 319 (455)
T KOG0231|consen 274 GYVGEFKQDKKHGGGQFLFLNGSEYEGWFREGPKSGLGGFTFDKGP 319 (455)
T ss_pred cccCcceeccccCcceeeeccccccccccccCccccccccccCCCC
Confidence 8999999999999999999999999999999999999888887765
No 10
>KOG0231 consensus Junctional membrane complex protein Junctophilin and related MORN repeat proteins [General function prediction only]
Probab=99.75 E-value=1.4e-18 Score=188.93 Aligned_cols=186 Identities=31% Similarity=0.669 Sum_probs=173.7
Q ss_pred cceeEEEEecCCCEEEEEEECCeEeeeEEEEEcCCcEEEEEEECCeEeeeEEEEeCCCCeEEEEEeCC----eEeeEEEE
Q 038683 58 ETYLADKILPNGDYYTGQWYENFPNGLGKYLWTDGCMYVGEWHRGKTMGKGRFSWPSGATYEGEFKSG----FMDGIGTY 133 (561)
Q Consensus 58 ~~g~~~~~~~nG~~Y~G~~~~g~~~G~G~~~~~dG~~YeG~w~nGk~~G~G~~~~~nG~~YeG~f~ng----~~~G~G~~ 133 (561)
-.+.+..+++||++|+|+|.+++++|.|.++++||..|+|+|.++++||+|++.+|+|.+|+|+|+++ .++|.+.+
T Consensus 131 ~~g~g~~~~~~g~~Y~G~~~~~k~sG~Gv~~~~~G~~Y~Gew~~n~~hG~G~~~~pdGsk~eg~~~~~~l~~l~~gk~~~ 210 (455)
T KOG0231|consen 131 RSGEGVIELPTGDTYEGEFKRGKRSGFGVYIRSDGLKYEGEWLDNRRHGYGVLTFPDGSKYEGQYKNNILEALRHGKGRY 210 (455)
T ss_pred cCccceEecCCCCEEEeeecCCcccccceEEecCCCEeeceecCCCccCCCeEEccCCCEEEEEeecccccccccceEEE
Confidence 35778899999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred EecC----------CCEEEEEEEe-eeecccceEeeCCCCccccceecCeeecceEEEecCCceEEEEEecCeEeeeEEE
Q 038683 134 TGSN----------GDTYRGQWVM-NLKHGHGVKSYANGDCYDGEWRCGMQEGQGKYNWKNGNYYIGEWRKGGIFGKGTF 202 (561)
Q Consensus 134 ~~~d----------G~~Y~G~w~n-g~~~G~G~~~~~nG~~Y~G~wk~G~~~G~G~~~~~nG~~Y~G~wknG~~~G~G~~ 202 (561)
.+.+ ..+|.++|.+ ...|+.+...+.++..|.+.|..+..+|.+++.+.++..|.|.|..+.++|.+.+
T Consensus 211 ~~~~~~~~a~ra~~~~~~~~Ew~~~~~~~~~~~~e~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~~~~ 290 (455)
T KOG0231|consen 211 KFDDALEAAQRAATIARYSGEWAARGQSHGRGYAEAADGSAYAGQEDAGVARGLAKLHFPNGSGYVGEFKQDKKHGGGQF 290 (455)
T ss_pred EEeccchhhhhhhhhhhhhhhhhhhcCCCcceeEEeccccchhhhhhcCccccccceeccccccccCcceeccccCccee
Confidence 9986 6789999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCEEEEEEeCCeeeeeEEEEeCCCC-EEEEEEeCCCCc
Q 038683 203 VWSNGNTYDGYWEDGMPKGNGTFKWPDDS-FYVGNWSKDPNE 243 (561)
Q Consensus 203 ~~~nG~~Y~G~w~nG~~~G~G~~~~~dG~-~Y~G~w~ng~~~ 243 (561)
.+.++..+++.|..+...|.+.+++.++. .-...|..+..+
T Consensus 291 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (455)
T KOG0231|consen 291 LFLNGSEYEGWFREGPKSGLGGFTFDKGPAPRSIPWSSGLPE 332 (455)
T ss_pred eeccccccccccccCccccccccccCCCCccccccccccccc
Confidence 99999999999999999999999998887 444555554433
No 11
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=3.7e-18 Score=153.66 Aligned_cols=131 Identities=33% Similarity=0.562 Sum_probs=71.7
Q ss_pred CcEEEEEEECCeEeeeEEEEeCCCCeEEEEEeCCeEeeEEEEEecCCCEEEEEEEeeeecccceEeeCCCCccccceecC
Q 038683 92 GCMYVGEWHRGKTMGKGRFSWPSGATYEGEFKSGFMDGIGTYTGSNGDTYRGQWVMNLKHGHGVKSYANGDCYDGEWRCG 171 (561)
Q Consensus 92 G~~YeG~w~nGk~~G~G~~~~~nG~~YeG~f~ng~~~G~G~~~~~dG~~Y~G~w~ng~~~G~G~~~~~nG~~Y~G~wk~G 171 (561)
+..|++.|..++..|.+++..+.++++.|.+++++..|.|.+.+.+|.+|+|.++|++.+|.|++.++|+++|+|.|+++
T Consensus 8 g~~y~~~~~~g~~~g~s~~~~~~car~~g~~kqg~~~Gkgs~~~~~G~~Y~Gtl~ngk~nGqG~~~~~ngd~Y~g~F~s~ 87 (139)
T COG4642 8 GLRYEGFFVRGKLEGLSTYDILGCARVGGSLKQGKLAGKGSLKYDNGRIYTGTLKNGKMNGQGTYTFANGDIYEGPFNSG 87 (139)
T ss_pred heeeeeEEecccccccceEEeccccEEeeeEeeeecCCCccEEEcCCccccceEEcCcccCcEEEEecCCCeEeccccCc
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred eeecceEEEecCCceEEEEEecCeEeeeEEEEEcCCCEEEEEEeCCeeeee
Q 038683 172 MQEGQGKYNWKNGNYYIGEWRKGGIFGKGTFVWSNGNTYDGYWEDGMPKGN 222 (561)
Q Consensus 172 ~~~G~G~~~~~nG~~Y~G~wknG~~~G~G~~~~~nG~~Y~G~w~nG~~~G~ 222 (561)
+.+|.|.+...+|..|+|.|..+...|.|.+..+++.+|.|.++.+++++.
T Consensus 88 ~F~g~G~~~~~~Gw~~~G~F~~Gq~~g~g~l~~~~g~vy~G~fk~g~f~~~ 138 (139)
T COG4642 88 KFRGQGTRGSFNGWLYIGRFTEGQANGKGFLLKEDGSVYTGMFKQGRFPKN 138 (139)
T ss_pred cccceEeeccccCCEEeeeecccccCCceeEEecCCcEEeeeEEeeecCCC
Confidence 555555555555556666666666666666655665566666665555543
No 12
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.69 E-value=2.9e-17 Score=190.88 Aligned_cols=105 Identities=32% Similarity=0.547 Sum_probs=96.6
Q ss_pred CCeEEEEeCHHHHHHHHHHcCCChhhHHHhhccCccccccCCCCCccceEEEeeCCcEEEEecCHHHHHHHHHHHHHHHH
Q 038683 452 GEFKWKDYCPLVFRTLRKLFKVDSADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTIKKSEVKVLIRMLPAYYN 531 (561)
Q Consensus 452 ~~f~~k~y~P~vF~~lR~~~~i~~~dy~~Sl~~~~~l~~~~s~GKSGs~F~~T~D~rfiIKTi~~~E~~~l~~~Lp~Y~~ 531 (561)
..|.++.|.+..|+.||+.++-++++|++||+ .+..|-+++|||||+|+.|-|+|||||.|++.|++.|++++|+||+
T Consensus 1324 ~k~svk~~yAe~F~~LR~~c~~sEe~fIrSLs--Rc~~W~aqGGKSgs~F~KTlDDRFIiKq~sk~EleSFikFAP~YFk 1401 (1598)
T KOG0230|consen 1324 AKYSVKCYYAEQFRALRKICCPSEEDFIRSLS--RCVKWEAQGGKSGSFFAKTLDDRFIIKQMSKTELESFIKFAPAYFK 1401 (1598)
T ss_pred eEEEEEEEehhhHHHHHHhhCchHHHHHHHHh--cCcccccCCCcccceeeccccchhhhhhccHHHHHHHHhhhHHHHH
Confidence 46899999999999999999999999999997 4678999999999999999999999999999999999999999999
Q ss_pred HHh-----cCCCcccceeeEEEEEEEcCccccc
Q 038683 532 HVR-----AHENTLVIKFFGLHCVKLTGPIQRK 559 (561)
Q Consensus 532 h~~-----~np~TLL~k~~Gl~~ik~~~~~~~k 559 (561)
||. ..| |+|+||||+|+|.+.....-|
T Consensus 1402 Yl~~s~~~~~P-T~LAKIlGiyqV~vK~~~sgk 1433 (1598)
T KOG0230|consen 1402 YLTESISQKSP-TCLAKILGIYQVSVKSPKSGK 1433 (1598)
T ss_pred HHHHHHhcCCc-chhhhhheeEEEEEecCCCCc
Confidence 996 556 999999999999988764444
No 13
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=5.4e-06 Score=83.28 Aligned_cols=206 Identities=16% Similarity=0.183 Sum_probs=148.0
Q ss_pred ceeEEEEecCCCEEEEEEECCeEeeeEEEEEcCCcEEE-EEEECCeEeeeEEEEeCCCCeEEEEEeCCe---EeeEEEEE
Q 038683 59 TYLADKILPNGDYYTGQWYENFPNGLGKYLWTDGCMYV-GEWHRGKTMGKGRFSWPSGATYEGEFKSGF---MDGIGTYT 134 (561)
Q Consensus 59 ~g~~~~~~~nG~~Y~G~~~~g~~~G~G~~~~~dG~~Ye-G~w~nGk~~G~G~~~~~nG~~YeG~f~ng~---~~G~G~~~ 134 (561)
.+.....+.+|.+..=..--++.+|.=..++.+|.+=. =.+..+..--.....+.++ ...+.+..+. .+|.-..+
T Consensus 14 ~~~~~~y~~~g~~~~~~~y~~k~~g~~~~y~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~ 92 (230)
T COG2849 14 DGVTITYYLNGAIEEKANYVNKLEGKEKLYDEDGKLLSKLDFSAGEEVKSKEEYYDNG-TLKGEYLEGKKTPFTGIVEKY 92 (230)
T ss_pred CceEEEEecCCCcceeeehhhhcccceEEEccccccccccccCCCceEeeeeEEEecC-ceeEEEecccccCCcceeeEe
Confidence 45556666777665443322277777777777766543 1122222222333333332 2233333333 35655666
Q ss_pred ecCCCE-EEEEEEeeeecccceEeeCCCCcc-ccceecCeeecceEEEecCCce-EEEEEecCeEeeeEEEEEcCCCE-E
Q 038683 135 GSNGDT-YRGQWVMNLKHGHGVKSYANGDCY-DGEWRCGMQEGQGKYNWKNGNY-YIGEWRKGGIFGKGTFVWSNGNT-Y 210 (561)
Q Consensus 135 ~~dG~~-Y~G~w~ng~~~G~G~~~~~nG~~Y-~G~wk~G~~~G~G~~~~~nG~~-Y~G~wknG~~~G~G~~~~~nG~~-Y 210 (561)
..||.. ..-.++|++++|....+|++|... +-.+++|+++|.-..+++||.. ++..|+++++.|.-..++++|.+ .
T Consensus 93 ~~ng~~~~~~~~kNG~~~g~~~~~y~nGk~~~~~~~~ng~~~G~~~~yy~nG~~~~e~~~kn~~~~g~~k~yy~nGkl~~ 172 (230)
T COG2849 93 YENGELEAAIYYKNGKLDGETKEFYENGKLKSEYNYKNGKLHGIQKEYYENGKLKSETVYKNGKLEGIAKTYYENGKLLS 172 (230)
T ss_pred ecCCeEEEEEEecCCceeeeEEEEEcCCcEeEEEEecCCcccceEEEEEcCCCEEEEEEEeCCCccccEEEEcCCCcEEE
Confidence 666653 667788899999888889998764 5778999999999999999875 78999999999999999999985 7
Q ss_pred EEEEeCCeeeeeEEEEeCCCC-EEEEEEeCCCCccceEEEeCCCCCccccccCCCc
Q 038683 211 DGYWEDGMPKGNGTFKWPDDS-FYVGNWSKDPNEQNGTYFPSETSPEENQDWDPRS 265 (561)
Q Consensus 211 ~G~w~nG~~~G~G~~~~~dG~-~Y~G~w~ng~~~G~G~~y~~~G~~~~~~~~~~~~ 265 (561)
+-.++||+++|.-..++++|. ..+..|++|+.+|.-.+|++.|.++.+..+.++.
T Consensus 173 e~~~knG~~~G~~k~Y~enGkl~~e~~~kng~~~G~~~~yde~G~~i~~~~y~~g~ 228 (230)
T COG2849 173 EVPYKNGKKNGVVKIYYENGKLVEEVTYKNGKLDGVVKEYDEAGKLIKETLYKNGK 228 (230)
T ss_pred eecccCCcccceEEEEccCCCEeEEEEecCCcccccEEEEecCCCEEEEEEeeCCc
Confidence 889999999999999999999 5779999999999999999999887776665543
No 14
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.14 E-value=7.2e-05 Score=75.19 Aligned_cols=122 Identities=19% Similarity=0.198 Sum_probs=65.6
Q ss_pred EEEeCCeEeeEEEEEecCCCE-EEEEEEeeeecccceEeeCCCCc-cccceecCeeecceEEEecCCce-EEEEEecCeE
Q 038683 120 GEFKSGFMDGIGTYTGSNGDT-YRGQWVMNLKHGHGVKSYANGDC-YDGEWRCGMQEGQGKYNWKNGNY-YIGEWRKGGI 196 (561)
Q Consensus 120 G~f~ng~~~G~G~~~~~dG~~-Y~G~w~ng~~~G~G~~~~~nG~~-Y~G~wk~G~~~G~G~~~~~nG~~-Y~G~wknG~~ 196 (561)
-.|+||.++|....++++|.. -.-.|++++.||.-..+|+||.. ++..|+++.++|.-..++++|.+ .+-.+++|.+
T Consensus 102 ~~~kNG~~~g~~~~~y~nGk~~~~~~~~ng~~~G~~~~yy~nG~~~~e~~~kn~~~~g~~k~yy~nGkl~~e~~~knG~~ 181 (230)
T COG2849 102 IYYKNGKLDGETKEFYENGKLKSEYNYKNGKLHGIQKEYYENGKLKSETVYKNGKLEGIAKTYYENGKLLSEVPYKNGKK 181 (230)
T ss_pred EEecCCceeeeEEEEEcCCcEeEEEEecCCcccceEEEEEcCCCEEEEEEEeCCCccccEEEEcCCCcEEEeecccCCcc
Confidence 344444444444444444433 22344455555555555555442 35555555555555555566543 4455666666
Q ss_pred eeeEEEEEcCCCE-EEEEEeCCeeeeeEEEEeCCCC-EEEEEEeCCC
Q 038683 197 FGKGTFVWSNGNT-YDGYWEDGMPKGNGTFKWPDDS-FYVGNWSKDP 241 (561)
Q Consensus 197 ~G~G~~~~~nG~~-Y~G~w~nG~~~G~G~~~~~dG~-~Y~G~w~ng~ 241 (561)
+|.-..++.||.. .+..|+||+.+|.-..+...|. +-+..+++|+
T Consensus 182 ~G~~k~Y~enGkl~~e~~~kng~~~G~~~~yde~G~~i~~~~y~~g~ 228 (230)
T COG2849 182 NGVVKIYYENGKLVEEVTYKNGKLDGVVKEYDEAGKLIKETLYKNGK 228 (230)
T ss_pred cceEEEEccCCCEeEEEEecCCcccccEEEEecCCCEEEEEEeeCCc
Confidence 6666666666663 5666666666666666666665 3335555543
No 15
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=97.19 E-value=0.00055 Score=45.41 Aligned_cols=22 Identities=27% Similarity=0.934 Sum_probs=15.4
Q ss_pred EEEEEEeCCeeeeeEEEEeCCC
Q 038683 209 TYDGYWEDGMPKGNGTFKWPDD 230 (561)
Q Consensus 209 ~Y~G~w~nG~~~G~G~~~~~dG 230 (561)
+|+|+|.+|++||.|+++|+|.
T Consensus 2 ~Y~G~w~~g~~hG~G~~~~~d~ 23 (26)
T smart00698 2 RYEGEWRNGKRHGRGVYTYANX 23 (26)
T ss_pred eEEEEEECCeEEeeEEEEeccc
Confidence 5777777777777777777653
No 16
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=97.12 E-value=0.0008 Score=44.63 Aligned_cols=21 Identities=29% Similarity=0.756 Sum_probs=11.0
Q ss_pred EEEEEEECCeEeeeEEEEEcC
Q 038683 71 YYTGQWYENFPNGLGKYLWTD 91 (561)
Q Consensus 71 ~Y~G~~~~g~~~G~G~~~~~d 91 (561)
.|+|+|.++++||.|++.|+|
T Consensus 2 ~Y~G~w~~g~~hG~G~~~~~d 22 (26)
T smart00698 2 RYEGEWRNGKRHGRGVYTYAN 22 (26)
T ss_pred eEEEEEECCeEEeeEEEEecc
Confidence 355555555555555555543
No 17
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=97.01 E-value=0.00062 Score=43.42 Aligned_cols=21 Identities=48% Similarity=1.170 Sum_probs=10.1
Q ss_pred EEEEEECCeEeeeEEEEeCCC
Q 038683 95 YVGEWHRGKTMGKGRFSWPSG 115 (561)
Q Consensus 95 YeG~w~nGk~~G~G~~~~~nG 115 (561)
|+|+|++++++|.|++.|+||
T Consensus 1 Y~G~~~~g~~~G~G~~~~~~G 21 (23)
T PF02493_consen 1 YEGEWKNGKKHGYGVYTFPDG 21 (23)
T ss_dssp ECCEEETTEEECEEEEE-TTS
T ss_pred CEEEEEECcccccEEEEeCCC
Confidence 445555555555555555544
No 18
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=97.00 E-value=0.00069 Score=43.21 Aligned_cols=22 Identities=36% Similarity=0.856 Sum_probs=12.9
Q ss_pred EEEEEECCeEeeeEEEEEcCCc
Q 038683 72 YTGQWYENFPNGLGKYLWTDGC 93 (561)
Q Consensus 72 Y~G~~~~g~~~G~G~~~~~dG~ 93 (561)
|+|+|.++++||.|++.|+||+
T Consensus 1 Y~G~~~~g~~~G~G~~~~~~G~ 22 (23)
T PF02493_consen 1 YEGEWKNGKKHGYGVYTFPDGD 22 (23)
T ss_dssp ECCEEETTEEECEEEEE-TTS-
T ss_pred CEEEEEECcccccEEEEeCCCC
Confidence 5666666666666666666654
No 19
>PF14977 FAM194: FAM194 protein
Probab=66.79 E-value=44 Score=33.37 Aligned_cols=92 Identities=21% Similarity=0.363 Sum_probs=48.9
Q ss_pred eeCCCCccccceecCeeecceEEEecCCceEEEEEecCeEeeeEEEEEcCCC--EEEEEEeCCeeeeeEEEEeCCCCEEE
Q 038683 157 SYANGDCYDGEWRCGMQEGQGKYNWKNGNYYIGEWRKGGIFGKGTFVWSNGN--TYDGYWEDGMPKGNGTFKWPDDSFYV 234 (561)
Q Consensus 157 ~~~nG~~Y~G~wk~G~~~G~G~~~~~nG~~Y~G~wknG~~~G~G~~~~~nG~--~Y~G~w~nG~~~G~G~~~~~dG~~Y~ 234 (561)
.|++|..+.=. ..+|.|..+|++|++=+-.... +..+.-.+.+.|.. ...+.|.. +|.|++++++|.++.
T Consensus 10 ~Y~~g~~f~~~----f~DGsg~i~YPSGnlAi~~~~~-~~~~~~~~v~eD~~~~~ilA~Fd~---~G~g~~y~~~g~~~l 81 (208)
T PF14977_consen 10 YYKNGRKFHYM----FPDGSGQIFYPSGNLAICISPT-CRGGFTYIVYEDSPENTILALFDS---SGHGTCYHPNGNIWL 81 (208)
T ss_pred eCCCCcEEEEE----cCCCCEEEEeCCCCEEEEEecc-CCCceEEEEEecCCCCceEEEEcC---CCCEEEEcCCCCEEE
Confidence 44555444333 3346777777777766555554 44444455555543 24555543 577777777776322
Q ss_pred EEEeCCCCccceEEEeCCCCCcccccc
Q 038683 235 GNWSKDPNEQNGTYFPSETSPEENQDW 261 (561)
Q Consensus 235 G~w~ng~~~G~G~~y~~~G~~~~~~~~ 261 (561)
=.=. =-|.++++.|.....-.|
T Consensus 82 ~l~~-----~gG~~~D~~G~~~k~W~W 103 (208)
T PF14977_consen 82 VLNQ-----EGGQYFDQKGNRVKKWNW 103 (208)
T ss_pred EEEC-----CCCEEEcCCCCEEEEEec
Confidence 1111 125566666665555455
No 20
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=41.12 E-value=3.5e+02 Score=26.38 Aligned_cols=8 Identities=38% Similarity=0.775 Sum_probs=3.4
Q ss_pred EEEEcCCC
Q 038683 201 TFVWSNGN 208 (561)
Q Consensus 201 ~~~~~nG~ 208 (561)
++.++||.
T Consensus 122 ~i~~pnGq 129 (179)
T PF07202_consen 122 TITFPNGQ 129 (179)
T ss_pred EEEeCCCc
Confidence 33344443
No 21
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=39.96 E-value=13 Score=35.78 Aligned_cols=49 Identities=27% Similarity=0.571 Sum_probs=29.9
Q ss_pred EEEeCHHHH---HHHHHHcCCChhhHHHhhccCccccccCCCCCccceEEEeeCCcEEEE
Q 038683 456 WKDYCPLVF---RTLRKLFKVDSADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIK 512 (561)
Q Consensus 456 ~k~y~P~vF---~~lR~~~~i~~~dy~~Sl~~~~~l~~~~s~GKSGs~F~~T~D~rfiIK 512 (561)
.+.|+|..= ..|..+.++.+.|=..|+. .+.|+-+++||.|.|.||||=
T Consensus 102 vkkYyP~TTnld~~lK~RlnL~EgDPViS~G--------Dt~GRRaALFYRtSdEr~ill 153 (230)
T PF12226_consen 102 VKKYYPGTTNLDQQLKDRLNLTEGDPVISMG--------DTTGRRAALFYRTSDERYILL 153 (230)
T ss_dssp EEEB-GGG--S-HHHHHHHT--TT-EEEEEE--------ETT--EEEEEEETTTTEEEEE
T ss_pred hhhcCCCCccHHHHHHHhhccccCCceeeec--------CCCCceEEEEEeccCceEEEE
Confidence 466666432 3566666766666555554 257999999999999999984
No 22
>PF14977 FAM194: FAM194 protein
Probab=35.82 E-value=2.1e+02 Score=28.66 Aligned_cols=68 Identities=16% Similarity=0.222 Sum_probs=49.8
Q ss_pred EecCCceEEEEEecCeEeeeEEEEEcCCCEEEEEEeCCeeeeeEEEEeCCCC--EEEEEEeCCCCccceEEEeCCCCC
Q 038683 180 NWKNGNYYIGEWRKGGIFGKGTFVWSNGNTYDGYWEDGMPKGNGTFKWPDDS--FYVGNWSKDPNEQNGTYFPSETSP 255 (561)
Q Consensus 180 ~~~nG~~Y~G~wknG~~~G~G~~~~~nG~~Y~G~w~nG~~~G~G~~~~~dG~--~Y~G~w~ng~~~G~G~~y~~~G~~ 255 (561)
.|++|..|.=.|. +|-|.++|++|++=.-.-.. ...+.-.+.+.|.. ...+.|. .+|.|+.|+++|+.
T Consensus 10 ~Y~~g~~f~~~f~----DGsg~i~YPSGnlAi~~~~~-~~~~~~~~v~eD~~~~~ilA~Fd---~~G~g~~y~~~g~~ 79 (208)
T PF14977_consen 10 YYKNGRKFHYMFP----DGSGQIFYPSGNLAICISPT-CRGGFTYIVYEDSPENTILALFD---SSGHGTCYHPNGNI 79 (208)
T ss_pred eCCCCcEEEEEcC----CCCEEEEeCCCCEEEEEecc-CCCceEEEEEecCCCCceEEEEc---CCCCEEEEcCCCCE
Confidence 4677777755554 45788899999987666665 55566777777765 4667776 46999999999873
No 23
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=28.88 E-value=35 Score=20.70 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=5.0
Q ss_pred eeEEEEeCCCC
Q 038683 221 GNGTFKWPDDS 231 (561)
Q Consensus 221 G~G~~~~~dG~ 231 (561)
|.-+.+++||.
T Consensus 3 G~~~~yy~nG~ 13 (22)
T PF07661_consen 3 GEWKFYYENGK 13 (22)
T ss_pred ceEEEEeCCCC
Confidence 34444444444
No 24
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=27.88 E-value=5.8e+02 Score=24.89 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=32.3
Q ss_pred CeEeeeEEEEeCCCCeEEEEEeCCeEeeEEEEEecCCCEEEEEEEeeeecccceEeeCCCCccccceecCeeecceEEEe
Q 038683 102 GKTMGKGRFSWPSGATYEGEFKSGFMDGIGTYTGSNGDTYRGQWVMNLKHGHGVKSYANGDCYDGEWRCGMQEGQGKYNW 181 (561)
Q Consensus 102 Gk~~G~G~~~~~nG~~YeG~f~ng~~~G~G~~~~~dG~~Y~G~w~ng~~~G~G~~~~~nG~~Y~G~wk~G~~~G~G~~~~ 181 (561)
-.++|.=.+.||||.+ |=+|-+| .-.+.|+||.+ +.-..+|.=...|+||.+ ..-..+|.-...+
T Consensus 61 t~pdG~ev~~FpngQ~-E~h~pDG----~keI~fPDGt~-----k~~~~dG~e~~~fpDGT~-----~~~~~nG~k~i~~ 125 (179)
T PF07202_consen 61 TYPDGLEVYEFPNGQI-EKHYPDG----SKEIVFPDGTI-----KYIHPDGREETVFPDGTI-----VTIDPNGDKTITF 125 (179)
T ss_pred EcCCCcEEEEeCCCce-EEEcCCC----CEEEEeCCCcE-----EEEeCCCcEEEECCCceE-----EEEeCCCcEEEEe
Confidence 3344555555555432 2244333 33455566544 112233333445555522 2223455556666
Q ss_pred cCCce
Q 038683 182 KNGNY 186 (561)
Q Consensus 182 ~nG~~ 186 (561)
+||..
T Consensus 126 pnGq~ 130 (179)
T PF07202_consen 126 PNGQK 130 (179)
T ss_pred CCCcE
Confidence 77654
No 25
>PF12653 DUF3785: Protein of unknown function (DUF3785); InterPro: IPR024210 This family of proteins is functionally uncharacterised. Proteins in this family are approximately 140 amino acids in length and share two CXXC motifs suggesting these are zinc binding proteins. In clostridia proteins are found in an operon with three signalling proteins, suggesting that they are involved in DNA-binding transcription regulator downstream of an as yet unknown signalling pathway.
Probab=24.29 E-value=46 Score=30.61 Aligned_cols=27 Identities=30% Similarity=0.600 Sum_probs=21.0
Q ss_pred eEEEeeCCcEEEEecCHH-HHHHHHHHH
Q 038683 500 FFYLTNDDRYMIKTIKKS-EVKVLIRML 526 (561)
Q Consensus 500 ~F~~T~D~rfiIKTi~~~-E~~~l~~~L 526 (561)
||.+|.|++|||-||.++ +-..|-+++
T Consensus 80 FyIytK~~kyVIs~I~keYk~~SfNkL~ 107 (138)
T PF12653_consen 80 FYIYTKDNKYVISTICKEYKGTSFNKLF 107 (138)
T ss_pred EEEEecCCeEEeehhhhhhcCCcHHHHh
Confidence 567999999999999987 555555544
No 26
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=23.92 E-value=60 Score=25.35 Aligned_cols=22 Identities=41% Similarity=0.798 Sum_probs=15.7
Q ss_pred ccccCCCCCccceEEEeeCCcEEE
Q 038683 488 LRELSSPGKSGSFFYLTNDDRYMI 511 (561)
Q Consensus 488 l~~~~s~GKSGs~F~~T~D~rfiI 511 (561)
|-|... +.|-.||.|.|++|+|
T Consensus 25 lyeV~~--~~~~i~Y~~~dg~yli 46 (57)
T PF10411_consen 25 LYEVVL--KGGGILYVDEDGRYLI 46 (57)
T ss_dssp EEEEEE---TTEEEEEETTSSEEE
T ss_pred eEEEEE--CCCeEEEEcCCCCEEE
Confidence 444444 3346999999999997
No 27
>PRK10345 hypothetical protein; Provisional
Probab=21.13 E-value=1.4e+02 Score=29.53 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=34.6
Q ss_pred CCCCCccceEEEeeCCcEEEEecCHH---HHHHHHHHHHHHHHHHh----cCCCcccceeeEEEEEE
Q 038683 492 SSPGKSGSFFYLTNDDRYMIKTIKKS---EVKVLIRMLPAYYNHVR----AHENTLVIKFFGLHCVK 551 (561)
Q Consensus 492 ~s~GKSGs~F~~T~D~rfiIKTi~~~---E~~~l~~~Lp~Y~~h~~----~np~TLL~k~~Gl~~ik 551 (561)
...|-++..|--..|...+||.+... ..+.+++=+ .|+..+. .+|+ |+++||.+.-.
T Consensus 10 LG~G~~~~Vy~hp~~~~k~IKv~~~~~~~~~~~~~rEi-~~l~~L~~~~~~h~n--Ivr~yg~~et~ 73 (210)
T PRK10345 10 LGTGRHRKCYAHPEDAQRCIKIVYHRGDGGDKEIRREL-KYYAHLSRRLIDWSG--IPRYYGTVETD 73 (210)
T ss_pred ecCCCceEEEECCCCcCeEEEEEeccccchHHHHHHHH-HHHHHhhccCCCCcc--cceeeEEEEeC
Confidence 34566788886666787899988754 112222111 1555553 3554 99999987554
No 28
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.63 E-value=4.1e+02 Score=24.23 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=49.7
Q ss_pred EeCHHHHHHHHHHcCCChhhHHHhhccC--cc-----------cc-ccCCCCCccce----EEEeeCCcEEE--------
Q 038683 458 DYCPLVFRTLRKLFKVDSADYMLSICGN--DA-----------LR-ELSSPGKSGSF----FYLTNDDRYMI-------- 511 (561)
Q Consensus 458 ~y~P~vF~~lR~~~~i~~~dy~~Sl~~~--~~-----------l~-~~~s~GKSGs~----F~~T~D~rfiI-------- 511 (561)
-|-...|..+-+..+++++|....+... .. .+ .....||||.+ ||...+.-|+|
T Consensus 3 ifkt~~F~r~akk~~~sd~~L~~ai~el~~G~~~adLGGgv~K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~K~~~ 82 (120)
T PF06296_consen 3 IFKTKWFKRWAKKEGLSDDDLCEAIEELEQGLIDADLGGGVRKKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYAKNEK 82 (120)
T ss_pred eeecHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccchhccEEEEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEccccc
Confidence 4566789999999999999987665310 00 11 12256889853 44444444444
Q ss_pred EecCHHHHHHHHHHHHHHHHHH
Q 038683 512 KTIKKSEVKVLIRMLPAYYNHV 533 (561)
Q Consensus 512 KTi~~~E~~~l~~~Lp~Y~~h~ 533 (561)
-.|+..|.+.|+++...+.++-
T Consensus 83 ~nis~~El~~lk~la~~l~~~~ 104 (120)
T PF06296_consen 83 ANISDKELKALKKLAKELLNLS 104 (120)
T ss_pred CCCCHHHHHHHHHHHHHHHHhC
Confidence 2468899999999888887764
No 29
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=20.15 E-value=3.9e+02 Score=23.94 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=51.8
Q ss_pred HHHHHHHcCCChhhHHHhhccCccccccCCCCCccceEEEeeCCcEEEEecCHHHHHHHHHHHHHHHHHH-----hcCCC
Q 038683 464 FRTLRKLFKVDSADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTIKKSEVKVLIRMLPAYYNHV-----RAHEN 538 (561)
Q Consensus 464 F~~lR~~~~i~~~dy~~Sl~~~~~l~~~~s~GKSGs~F~~T~D~rfiIKTi~~~E~~~l~~~Lp~Y~~h~-----~~np~ 538 (561)
|..|-+.++-+++..+.=|. .|+...|+ +-.+++++|+= +-..+.|.++|..|.... ..+|+
T Consensus 24 f~~I~~~L~R~p~hv~kyl~-----~ELgt~g~------id~~~rlii~G--~~~~~~i~~~l~~yI~~yVlC~~C~spd 90 (110)
T smart00653 24 FADIAKALNRPPDHVLKFLL-----AELGTQGS------IDGKGRLIVNG--RFTPKKLQDLLRRYIKEYVLCPECGSPD 90 (110)
T ss_pred HHHHHHHHCCCHHHHHHHHH-----HHhCCcee------ECCCCeEEEEE--eeCHHHHHHHHHHHHHhcEECCCCCCCC
Confidence 77788888888887776663 46666554 23337888875 344666777778877763 28999
Q ss_pred cccceeeEEEEEE
Q 038683 539 TLVIKFFGLHCVK 551 (561)
Q Consensus 539 TLL~k~~Gl~~ik 551 (561)
|-|.|==+++.++
T Consensus 91 T~l~k~~r~~~l~ 103 (110)
T smart00653 91 TELIKENRLFFLK 103 (110)
T ss_pred cEEEEeCCeEEEE
Confidence 9999755555554
Done!