Query 038683
Match_columns 561
No_of_seqs 486 out of 2237
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 23:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ybx_A Phosphatidylinositol-5- 100.0 2E-37 6.8E-42 328.5 15.4 163 386-556 12-179 (394)
2 2gk9_A Phosphatidylinositol-4- 100.0 3.8E-36 1.3E-40 318.7 13.3 159 387-556 5-168 (392)
3 1h3i_A Histone H3 lysine 4 spe 99.9 1.9E-26 6.5E-31 236.3 14.3 131 89-219 2-139 (293)
4 1h3i_A Histone H3 lysine 4 spe 99.9 2.8E-26 9.5E-31 235.0 15.4 132 111-242 1-139 (293)
5 2f69_A Histone-lysine N-methyl 98.8 1.8E-09 6.1E-14 108.8 4.8 54 189-242 3-59 (261)
6 2f69_A Histone-lysine N-methyl 98.8 2.6E-09 9E-14 107.6 4.9 54 74-127 3-59 (261)
7 3ts3_A Capsid polyprotein; vir 42.3 7.8 0.00027 35.9 1.1 40 465-512 129-168 (208)
8 2ww5_A LYTC autolysin, 1,4-bet 42.0 12 0.0004 40.1 2.7 10 90-99 73-82 (468)
9 2ww5_A LYTC autolysin, 1,4-bet 40.5 8.8 0.0003 41.1 1.4 152 87-255 46-199 (468)
10 3ttq_A Dextransucrase; (beta/a 32.7 3.1E+02 0.011 32.5 12.6 100 129-238 90-200 (1108)
No 1
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=100.00 E-value=2e-37 Score=328.48 Aligned_cols=163 Identities=29% Similarity=0.477 Sum_probs=137.8
Q ss_pred CCCceeccccchhHHHHHHHHhHhhhhccCCCCc-CccccccCCCCcceeEe---cCCCCCCCCCCCCCCCCeEEEEeCH
Q 038683 386 RQGETISKDHKNYELMLNLQLGIRHSVARPGPAA-SLDLKASAFDPKEKVWT---KFPPEGSKHTPPHPSGEFKWKDYCP 461 (561)
Q Consensus 386 ~~g~~i~~gh~~~~L~~~~~~GIr~si~~~~~~~-~~~l~~~dF~~~~k~~~---~f~~~gs~~tp~~~~~~f~~k~y~P 461 (561)
-.|++.+..+.++.||.+||||||++|+++++.+ ++.|.++||.+.+|+++ .|+++ .+| .+|+|++|||
T Consensus 12 ~~~~~~~~~r~~~~l~~~~~~Gi~~~v~~~~~~~~~~~L~~~df~~~~k~~~~~~~f~~~---~~p----~~f~~k~Y~P 84 (394)
T 2ybx_A 12 DLGTENLYFQSMDPLLSVLMWGVNHSINELSHVQIPVMLMPDDFKAYSKIKVDNHLFNKE---NMP----SHFKFKEYCP 84 (394)
T ss_dssp -----CCCCCCSSHHHHHHHHHHHHHHHHHTTSCCCSSCCGGGGGCEEEEEEEEESSSTT---TSC----SEEEEEEESH
T ss_pred CCCCcccccccchHHHHHHHHhHHHHHhhccCCCCccccChhHhhhheEEecccccCCcc---cCC----CCeEEEEECH
Confidence 4577888889999999999999999999998754 45578999999999987 45655 344 4799999999
Q ss_pred HHHHHHHHHcCCChhhHHHhhccCccccccCCCCCccceEEEeeCCcEEEEecCHHHHHHHHHHHHHHHHHHh-cCCCcc
Q 038683 462 LVFRTLRKLFKVDSADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTIKKSEVKVLIRMLPAYYNHVR-AHENTL 540 (561)
Q Consensus 462 ~vF~~lR~~~~i~~~dy~~Sl~~~~~l~~~~s~GKSGs~F~~T~D~rfiIKTi~~~E~~~l~~~Lp~Y~~h~~-~np~TL 540 (561)
.+|+.||++|||+++||+.|||+...+ ++.++|||||+||+|.|+|||||||+++|+++|+++||+||+||. +||+||
T Consensus 85 ~~F~~LR~~~~i~~~dy~~Sl~~~~~~-~~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~~~~~~~~~TL 163 (394)
T 2ybx_A 85 MVFRNLRERFGIDDQDFQNSLTRSAPL-PNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHNILKKYHQYIVECHGITL 163 (394)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHSSCCE-ECC-----CCCEEECTTSSEEEEEECHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHhCCCHHHHHHHhcCCCcc-ccCCCCCccCEEEEeCCCcEEEEeeCHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 999999999999999999999976654 488999999999999999999999999999999999999999994 699999
Q ss_pred cceeeEEEEEEEcCcc
Q 038683 541 VIKFFGLHCVKLTGPI 556 (561)
Q Consensus 541 L~k~~Gl~~ik~~~~~ 556 (561)
|+||||||+|++.+..
T Consensus 164 L~k~~Gly~v~~~~~~ 179 (394)
T 2ybx_A 164 LPQFLGMYRLNVDGVE 179 (394)
T ss_dssp SCCEEEEEEEEETTEE
T ss_pred hhhhcEEEEEEECCeE
Confidence 9999999999998753
No 2
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.8e-36 Score=318.68 Aligned_cols=159 Identities=27% Similarity=0.477 Sum_probs=128.8
Q ss_pred CCceeccccchhHHHHHHHHhHhhhhccCCCCcC-ccccccCCCCcceeEe---cCCCCCCCCCCCCCCCCeEEEEeCHH
Q 038683 387 QGETISKDHKNYELMLNLQLGIRHSVARPGPAAS-LDLKASAFDPKEKVWT---KFPPEGSKHTPPHPSGEFKWKDYCPL 462 (561)
Q Consensus 387 ~g~~i~~gh~~~~L~~~~~~GIr~si~~~~~~~~-~~l~~~dF~~~~k~~~---~f~~~gs~~tp~~~~~~f~~k~y~P~ 462 (561)
.++.+...+.++.||.+||||||+||+++++.+. ..|+++||.+.+|+++ .|+++ .+| .+|+|++|||.
T Consensus 5 ~~~~~~~~r~~~~~~~~~~~Gi~~~v~~~~~~~~~~~L~~~df~~~~k~~~~~~~f~~e---~~p----~~f~~k~Y~P~ 77 (392)
T 2gk9_A 5 VQQKVKVFRAADPLVGVFLWGVAHSINELSQVPPPVMLLPDDFKASSKIKVNNHLFHRE---NLP----SHFKFKEYCPQ 77 (392)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTTSCCCSSCCGGGGGCEEEEEEECSSSCCS---SSC----SSBEEEEESHH
T ss_pred ceeeeeecCcchHHHHHHHHhHHHHhhcccCCCCccccChhHhhhheEEeeccccCCcc---cCC----CceEEEEECHH
Confidence 3445555666799999999999999999988654 4589999999999987 35544 344 47999999999
Q ss_pred HHHHHHHHcCCChhhHHHhhccCccccccCCCCCccceEEEeeCCcEEEEecCHHHHHHHHHHHHHHHHHH-hcCCCccc
Q 038683 463 VFRTLRKLFKVDSADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTIKKSEVKVLIRMLPAYYNHV-RAHENTLV 541 (561)
Q Consensus 463 vF~~lR~~~~i~~~dy~~Sl~~~~~l~~~~s~GKSGs~F~~T~D~rfiIKTi~~~E~~~l~~~Lp~Y~~h~-~~np~TLL 541 (561)
+|+.||++|||+++||+.|||+...+. ++|||| +||+|+|+|||||||+++|+++|+++||+||+|| .+||+|||
T Consensus 78 ~F~~LR~~~~i~~~dy~~Sl~~~~~~~---s~GKSG-~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~~~~~~~~~TLL 153 (392)
T 2gk9_A 78 VFRNLRDRFGIDDQDYLVSLTRNPPSE---SEGSDG-RFLISYDRTLVIKEVSSEDIADMHSNLSNYHQYIVKCHGNTLL 153 (392)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHSSCCCC---CC------CCCCTTSSEEEEECCHHHHHHHHHHHHHHHHHHHHTTSCSSS
T ss_pred HHHHHHHHhCCCHHHHHHHhcCCCccc---CCCCcc-eEEEcCCCcEEEEeeCHHHHHHHHHHHHHHHHHHHhhCCCcch
Confidence 999999999999999999999776654 999999 9999999999999999999999999999999999 56999999
Q ss_pred ceeeEEEEEEEcCcc
Q 038683 542 IKFFGLHCVKLTGPI 556 (561)
Q Consensus 542 ~k~~Gl~~ik~~~~~ 556 (561)
+||||||+|++.+..
T Consensus 154 ~k~~Gly~v~~~~~~ 168 (392)
T 2gk9_A 154 PQFLGMYRVSVDNED 168 (392)
T ss_dssp CCEEEEEECCBSSCC
T ss_pred hhhceEEEEEECCeE
Confidence 999999999987754
No 3
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.94 E-value=1.9e-26 Score=236.27 Aligned_cols=131 Identities=21% Similarity=0.388 Sum_probs=83.5
Q ss_pred EcCCcEEEEEEECCeEeeeEEEEeCCCCeEEEEEeCCeEeeEEEEEecCCC-EEEEEEEeeeecccceEeeCCCCccccc
Q 038683 89 WTDGCMYVGEWHRGKTMGKGRFSWPSGATYEGEFKSGFMDGIGTYTGSNGD-TYRGQWVMNLKHGHGVKSYANGDCYDGE 167 (561)
Q Consensus 89 ~~dG~~YeG~w~nGk~~G~G~~~~~nG~~YeG~f~ng~~~G~G~~~~~dG~-~Y~G~w~ng~~~G~G~~~~~nG~~Y~G~ 167 (561)
|+||.+|+|+|++|++||.|+++|++|.+|+|+|++|++||.|+++++||. +|+|+|+++++||.|+++++||++|+|+
T Consensus 2 ~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~y~G~ 81 (293)
T 1h3i_A 2 FFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVGE 81 (293)
T ss_dssp CSSSCCCCEEEETTEEEEEEEEECTTSCEEEEEEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCEEEEE
T ss_pred cCCCCEEEEEEECCEeeEEEEEEECCCCEEEEEEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCEEEEE
Confidence 345555555555555555555555555555555555555555555555555 5555555555556666666666666666
Q ss_pred ee-cCeeecc-eEEEecCCc-eEEEEEecCeEe-eeEEEE--EcCCCEEEEEEeCCee
Q 038683 168 WR-CGMQEGQ-GKYNWKNGN-YYIGEWRKGGIF-GKGTFV--WSNGNTYDGYWEDGMP 219 (561)
Q Consensus 168 wk-~G~~~G~-G~~~~~nG~-~Y~G~wknG~~~-G~G~~~--~~nG~~Y~G~w~nG~~ 219 (561)
|+ +|+++|. |+++++||. .|+|+|++|+++ |.|+++ ++||..+.|.|.++..
T Consensus 82 ~~~~g~~~G~gG~~~~~~G~~~y~G~~~~g~~~~G~~~~~~~~~~g~~~~g~w~~g~~ 139 (293)
T 1h3i_A 82 VNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSV 139 (293)
T ss_dssp CCTTSCSCEEEEEEECTTSSEEEEEEEETTEEEEEEEEEEEECTTTSCEEEECSSCCE
T ss_pred EeECCeEeCCeEEEEECCCCEEEEEEEECCEEEccceEEEEecCCcceEEeEEcCCce
Confidence 66 7777777 777777777 477777777777 777777 6777777777776665
No 4
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.94 E-value=2.8e-26 Score=235.02 Aligned_cols=132 Identities=19% Similarity=0.323 Sum_probs=113.4
Q ss_pred EeCCCCeEEEEEeCCeEeeEEEEEecCCCEEEEEEEeeeecccceEeeCCCC-ccccceecCeeecceEEEecCCceEEE
Q 038683 111 SWPSGATYEGEFKSGFMDGIGTYTGSNGDTYRGQWVMNLKHGHGVKSYANGD-CYDGEWRCGMQEGQGKYNWKNGNYYIG 189 (561)
Q Consensus 111 ~~~nG~~YeG~f~ng~~~G~G~~~~~dG~~Y~G~w~ng~~~G~G~~~~~nG~-~Y~G~wk~G~~~G~G~~~~~nG~~Y~G 189 (561)
+|+||.+|+|+|++|++||.|+++++||.+|+|+|++|++||.|+++++||. +|+|+|++|+++|.|+++|+||.+|+|
T Consensus 1 ~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~y~G 80 (293)
T 1h3i_A 1 FFFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVG 80 (293)
T ss_dssp CCSSSCCCCEEEETTEEEEEEEEECTTSCEEEEEEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCEEEE
T ss_pred CcCCCCEEEEEEECCEeeEEEEEEECCCCEEEEEEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCEEEE
Confidence 3688888888888888888888888888888888888888888888888888 888888888888888888888888888
Q ss_pred EEe-cCeEeee-EEEEEcCCC-EEEEEEeCCeee-eeEEEE--eCCCCEEEEEEeCCCC
Q 038683 190 EWR-KGGIFGK-GTFVWSNGN-TYDGYWEDGMPK-GNGTFK--WPDDSFYVGNWSKDPN 242 (561)
Q Consensus 190 ~wk-nG~~~G~-G~~~~~nG~-~Y~G~w~nG~~~-G~G~~~--~~dG~~Y~G~w~ng~~ 242 (561)
+|+ +|++||. |+++++||. .|+|.|+||+++ |.|+++ +++|..+.|.|.++..
T Consensus 81 ~~~~~g~~~G~gG~~~~~~G~~~y~G~~~~g~~~~G~~~~~~~~~~g~~~~g~w~~g~~ 139 (293)
T 1h3i_A 81 EVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEGRPHFELMPGNSV 139 (293)
T ss_dssp ECCTTSCSCEEEEEEECTTSSEEEEEEEETTEEEEEEEEEEEECTTTSCEEEECSSCCE
T ss_pred EEeECCeEeCCeEEEEECCCCEEEEEEEECCEEEccceEEEEecCCcceEEeEEcCCce
Confidence 888 8888888 888888888 588888888888 888888 7888888888876654
No 5
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.82 E-value=1.8e-09 Score=108.80 Aligned_cols=54 Identities=17% Similarity=0.291 Sum_probs=34.1
Q ss_pred EEEecCeEeeeEEEEEcCCCEEEEEEe-CCeeeee-EEEEeCCCCE-EEEEEeCCCC
Q 038683 189 GEWRKGGIFGKGTFVWSNGNTYDGYWE-DGMPKGN-GTFKWPDDSF-YVGNWSKDPN 242 (561)
Q Consensus 189 G~wknG~~~G~G~~~~~nG~~Y~G~w~-nG~~~G~-G~~~~~dG~~-Y~G~w~ng~~ 242 (561)
|+|++|++||.|+++++||.+|+|+|. +|.++|. |+|+|+||.+ |+|.|.+|.+
T Consensus 3 g~~~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~ 59 (261)
T 2f69_A 3 MGYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEM 59 (261)
T ss_dssp --------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEE
T ss_pred ceecCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCCcE
Confidence 677777777777777777777777777 7777777 7777777776 7777777654
No 6
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.80 E-value=2.6e-09 Score=107.57 Aligned_cols=54 Identities=28% Similarity=0.468 Sum_probs=32.7
Q ss_pred EEEECCeEeeeEEEEEcCCcEEEEEEE-CCeEeee-EEEEeCCCCe-EEEEEeCCeE
Q 038683 74 GQWYENFPNGLGKYLWTDGCMYVGEWH-RGKTMGK-GRFSWPSGAT-YEGEFKSGFM 127 (561)
Q Consensus 74 G~~~~g~~~G~G~~~~~dG~~YeG~w~-nGk~~G~-G~~~~~nG~~-YeG~f~ng~~ 127 (561)
|+|++|++||.|.++|+||..|+|+|. +|.+||. |+++||||.+ |+|+|++|.+
T Consensus 3 g~~~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~ 59 (261)
T 2f69_A 3 MGYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEM 59 (261)
T ss_dssp --------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEE
T ss_pred ceecCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCCcE
Confidence 667777777777777777777777777 7777777 7777777776 7777776665
No 7
>3ts3_A Capsid polyprotein; virus protein, projection domain, astrovirus capsid, viral P; 1.49A {Turkey astrovirus 2}
Probab=42.29 E-value=7.8 Score=35.86 Aligned_cols=40 Identities=23% Similarity=0.582 Sum_probs=30.8
Q ss_pred HHHHHHcCCChhhHHHhhccCccccccCCCCCccceEEEeeCCcEEEE
Q 038683 465 RTLRKLFKVDSADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIK 512 (561)
Q Consensus 465 ~~lR~~~~i~~~dy~~Sl~~~~~l~~~~s~GKSGs~F~~T~D~rfiIK 512 (561)
+.|..+.++.+.|=..|+. .+.|+-+++||.|.|+||||=
T Consensus 129 q~lk~r~nl~egDpvismg--------dt~Grraalfyrtsder~ill 168 (208)
T 3ts3_A 129 EQLKQRLNLAEGDPVISMG--------DTNGRRAALFYRTSDEKYILF 168 (208)
T ss_dssp HHHHHHHCCCTTCEEEEEE--------ETTCCEEEEEEETTTTEEEEE
T ss_pred hhhhhhhccccCCceeeec--------ccCCceeeeeeeccCceEEEE
Confidence 3566677777776666664 256999999999999999985
No 8
>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase, glycosidase, choline-binding protein; 1.61A {Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A
Probab=42.04 E-value=12 Score=40.11 Aligned_cols=10 Identities=40% Similarity=0.840 Sum_probs=4.4
Q ss_pred cCCcEEEEEE
Q 038683 90 TDGCMYVGEW 99 (561)
Q Consensus 90 ~dG~~YeG~w 99 (561)
+||.+..|.|
T Consensus 73 ~~G~~~~~~w 82 (468)
T 2ww5_A 73 SDGRYSQNEW 82 (468)
T ss_dssp TTSBBCCSEE
T ss_pred CCCCEeEccc
Confidence 3444444444
No 9
>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase, glycosidase, choline-binding protein; 1.61A {Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A
Probab=40.50 E-value=8.8 Score=41.10 Aligned_cols=152 Identities=16% Similarity=0.239 Sum_probs=76.8
Q ss_pred EEE-cCCcEEEEEEECCeEeeeEEEEeCCCCeEEEEEeCCeEeeEEEEEecCCCEEEEEEEeeeecccceEeeCCCCccc
Q 038683 87 YLW-TDGCMYVGEWHRGKTMGKGRFSWPSGATYEGEFKSGFMDGIGTYTGSNGDTYRGQWVMNLKHGHGVKSYANGDCYD 165 (561)
Q Consensus 87 ~~~-~dG~~YeG~w~nGk~~G~G~~~~~nG~~YeG~f~ng~~~G~G~~~~~dG~~Y~G~w~ng~~~G~G~~~~~nG~~Y~ 165 (561)
|++ .||.+..+.|......|.--+..++|....|.|.+ --+..++|....|.|..+...|.=-+...+|....
T Consensus 46 yY~~~~G~~~~~~w~~~~~~g~wyY~~~~G~~~~~~w~~------~Yy~~~~G~m~~g~W~~~~~~~~wyY~~~~G~~~~ 119 (468)
T 2ww5_A 46 YYVKDDGSKAQSEWIFDNYYKAWFYINSDGRYSQNEWHG------NYYLKSGGYMAQNEWIYDSNYKSWFYLKSDGAYAH 119 (468)
T ss_dssp EEECSSSCBCCSEEEEETTTTEEEEECTTSBBCCSEEET------TEEECGGGCBCCSEEEEETTTTEEEEECTTSCBCC
T ss_pred EEECCCCCEeeeeEEEECCCCcEEEEcCCCCEeEccccc------eEEECCCCCEEeCeEEEeCCCCcEEEECCCCCEeE
Confidence 444 57888877776433234444555677766666642 13444677777888876543222122224555555
Q ss_pred cceecCeeecceEEEecCCceEEEEEecCeEeeeEEEE-EcCCCEEEEEEeCCeeeeeEEEEeCCCCEEEEEEeCCCCcc
Q 038683 166 GEWRCGMQEGQGKYNWKNGNYYIGEWRKGGIFGKGTFV-WSNGNTYDGYWEDGMPKGNGTFKWPDDSFYVGNWSKDPNEQ 244 (561)
Q Consensus 166 G~wk~G~~~G~G~~~~~nG~~Y~G~wknG~~~G~G~~~-~~nG~~Y~G~w~nG~~~G~G~~~~~dG~~Y~G~w~ng~~~G 244 (561)
..|+ +..|.--|.-++|....|.|.. .++ -.+|....|.|......|.=-|.-+||.+....|..- +|
T Consensus 120 ~gw~--~i~g~wYyf~~~G~m~tg~w~~-------~Yy~~~~G~m~~g~W~~~~~~~~wYY~~~~G~~~~~gw~~i--~g 188 (468)
T 2ww5_A 120 QEWQ--LIGNKWYYFKKWGYMAKSQWQG-------SYFLNGQGAMIQNEWLYDPAYSAYFYLKSDGTYANQEWQKV--GG 188 (468)
T ss_dssp SEEE--EETTEEEEECGGGCBCCSEEET-------TEEECTTSCBCCSEEEEETTTTEEEEECTTSSBCCSEEEEE--TT
T ss_pred CCeE--ecCCEEEEECCCCCEeEcceee-------eEEecCCCCcccceeeeecCCCcEEEECCCCCEeecceEEE--CC
Confidence 5555 2344444444566666666652 222 3455555555643211122223335666654234321 24
Q ss_pred ceEEEeCCCCC
Q 038683 245 NGTYFPSETSP 255 (561)
Q Consensus 245 ~G~~y~~~G~~ 255 (561)
+--|+.++|..
T Consensus 189 ~wYYf~~~G~m 199 (468)
T 2ww5_A 189 KWYYFKKWGYM 199 (468)
T ss_dssp EEEEECGGGCB
T ss_pred EEEEECCCCCE
Confidence 44555555543
No 10
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A*
Probab=32.68 E-value=3.1e+02 Score=32.50 Aligned_cols=100 Identities=12% Similarity=0.018 Sum_probs=43.6
Q ss_pred eEEEEEecCCCEEEEEEEeeeecccceEeeC-CCCccccceecCeeecceEEEecC-CceEEEE--------EecCeEee
Q 038683 129 GIGTYTGSNGDTYRGQWVMNLKHGHGVKSYA-NGDCYDGEWRCGMQEGQGKYNWKN-GNYYIGE--------WRKGGIFG 198 (561)
Q Consensus 129 G~G~~~~~dG~~Y~G~w~ng~~~G~G~~~~~-nG~~Y~G~wk~G~~~G~G~~~~~n-G~~Y~G~--------wknG~~~G 198 (561)
|...+..++|....|-.. ..|.--+..+ +|....|.|+. .+|.--|.-++ |....|. |.. ..|
T Consensus 90 G~WYYfd~dG~M~TGW~~---InGkwYYFd~~nG~M~tggW~~--idGkwYYFd~dsGaM~TG~~~~~~~g~W~~--~~G 162 (1108)
T 3ttq_A 90 TAWVYRDQNNTILKGLQN---INGTLQFFDPYTGEQLKGGVAK--YDDKLFYFESGKGNLVSTVAGDYQDGHYIS--QDG 162 (1108)
T ss_dssp CEEEEECTTSCBCCEEEE---ETTEEEEECTTTCCBCCSEEEE--ETTEEEEECTTTCCEEEEESEEESSCEEEE--ETT
T ss_pred CcEEEECCCCCEeeeeEE---ECCceEEeccCCCCcccceEEE--eCCcEEEECCCchhheeeccccccceeeec--CCc
Confidence 444444466666665321 2222222222 56666766653 22322222232 5555552 321 112
Q ss_pred eEEEEEcCCCEEEEEEeCCeeeeeEEEEe-CCCCEEEEEEe
Q 038683 199 KGTFVWSNGNTYDGYWEDGMPKGNGTFKW-PDDSFYVGNWS 238 (561)
Q Consensus 199 ~G~~~~~nG~~Y~G~w~nG~~~G~G~~~~-~dG~~Y~G~w~ 238 (561)
.--+.-++|....| |.. ..|+--|+. .+|.+..|.|.
T Consensus 163 ~WYYfd~dG~M~TG-W~~--IdGkwYYFdpsdG~M~tG~~v 200 (1108)
T 3ttq_A 163 QTRYADKQNQLVKG-LVT--VNGALQYFDNATGNQIKNQQV 200 (1108)
T ss_dssp EEEEECTTSCBCCE-EEE--ETTEEEEECTTTCCBCCSEEE
T ss_pred eEEEECCCCCEeee-eEE--ECCEEEEEECCCCcEEeCceE
Confidence 22222345555555 321 223333444 37777777654
Done!