BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038684
         (104 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
           Galactokinase In Complex With Galactose And Mg:amppnp
 pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
           Galactokinase In Complex With Galactose And Mg:amppnp
          Length = 548

 Score = 28.5 bits (62), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 10/50 (20%)

Query: 18  EKRASIEKIWRAACPSISG-CDDPLINPFVGSSLASLGCKRKLKESGWGG 66
           E +AS +K++  +CP I   C   L N   GS         +L  +GWGG
Sbjct: 452 ESQASCDKLYECSCPEIDKICSIALSNGSYGS---------RLTGAGWGG 492


>pdb|3SYJ|A Chain A, Crystal Structure Of The Haemophilus Influenzae Hap
           Adhesin
          Length = 1011

 Score = 25.4 bits (54), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 28  RAACPSISGCDDPLINPFVGSSLASLGCKRKLKESGWGGEAEIVESKGELHIFYLLNPTC 87
           +AA  +I+G ++ ++ P  G+++  L  ++++  +GW GE +  +  G L++ Y   PT 
Sbjct: 508 QAANVTITG-NESIVLP-NGNNINKLDYRKEIAYNGWFGETDKNKHNGRLNLIY--KPTT 563

Query: 88  D 88
           +
Sbjct: 564 E 564


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,115,256
Number of Sequences: 62578
Number of extensions: 110999
Number of successful extensions: 178
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 2
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)