BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038685
         (265 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GP6|A Chain A, Polynucleotide Kinase
 pdb|4GP6|B Chain B, Polynucleotide Kinase
          Length = 171

 Score = 32.7 bits (73), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 181 PSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWV 219
           P LS+V ++GSSG  K+ FA + +    + +  +CR  V
Sbjct: 7   PELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLV 45


>pdb|4GP7|A Chain A, Polynucleotide Kinase
 pdb|4GP7|B Chain B, Polynucleotide Kinase
          Length = 171

 Score = 31.2 bits (69), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 181 PSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAW 218
           P LS+V ++GSSG  K+ FA + +    + +  +CR  
Sbjct: 7   PELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGL 44


>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The
           Pectate Lyase From Thermotoga Maritima
          Length = 340

 Score = 27.7 bits (60), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 186 VAIVGSSGFDKTDFAGEAYNSNYMKNYF 213
           V++VGSS  +  + AG+AY   Y  NYF
Sbjct: 164 VSLVGSSDKEDPEQAGQAYKVTYHHNYF 191


>pdb|2C63|A Chain A, 14-3-3 Protein Eta (Human) Complexed To Peptide
 pdb|2C63|B Chain B, 14-3-3 Protein Eta (Human) Complexed To Peptide
 pdb|2C63|C Chain C, 14-3-3 Protein Eta (Human) Complexed To Peptide
 pdb|2C63|D Chain D, 14-3-3 Protein Eta (Human) Complexed To Peptide
 pdb|2C74|A Chain A, 14-3-3 Protein Eta (Human) Complexed To Peptide
 pdb|2C74|B Chain B, 14-3-3 Protein Eta (Human) Complexed To Peptide
          Length = 247

 Score = 27.3 bits (59), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 74  ILKEMKDFVHESEKVIYIFMISR----ITQQISGSSSKDLFDALLGLQSQIIDI-KQQLQ 128
           ++K   DF +ES KV Y+ M       + +  SG     + +A      +  +I K+Q+Q
Sbjct: 109 LIKNCNDFQYES-KVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQ 167

Query: 129 QFRPNTIGLWVELKSYFIEARNSSSTA 155
              P  +GL +    ++ E +N+   A
Sbjct: 168 PTHPIRLGLALNFSVFYYEIQNAPEQA 194


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,690,679
Number of Sequences: 62578
Number of extensions: 248893
Number of successful extensions: 495
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 5
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)