Query 038685
Match_columns 265
No_of_seqs 154 out of 1555
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 13:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 9.5E-25 2.1E-29 216.5 18.2 224 1-241 1-240 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.6 3.1E-14 6.7E-19 125.2 11.5 96 165-260 1-99 (287)
3 PLN03210 Resistant to P. syrin 99.1 3.6E-10 7.7E-15 117.1 9.1 61 158-220 182-242 (1153)
4 cd01128 rho_factor Transcripti 98.4 3.6E-07 7.7E-12 79.2 6.2 53 183-236 16-72 (249)
5 PRK09376 rho transcription ter 98.4 2.1E-07 4.6E-12 84.7 4.8 51 183-234 169-223 (416)
6 PRK00411 cdc6 cell division co 98.4 2.3E-06 5E-11 78.8 11.5 81 158-238 28-112 (394)
7 PTZ00202 tuzin; Provisional 98.4 1.1E-05 2.5E-10 74.4 14.5 98 154-261 256-354 (550)
8 TIGR02928 orc1/cdc6 family rep 98.3 6.7E-06 1.4E-10 74.9 11.2 80 158-237 13-100 (365)
9 PF13191 AAA_16: AAA ATPase do 98.2 3E-06 6.5E-11 69.2 6.6 50 161-210 1-51 (185)
10 TIGR00767 rho transcription te 98.1 6.6E-06 1.4E-10 75.4 5.7 55 183-238 168-226 (415)
11 PRK08118 topology modulation p 98.0 7.1E-06 1.5E-10 66.8 5.1 36 185-220 3-39 (167)
12 TIGR03015 pepcterm_ATPase puta 97.9 0.00011 2.4E-09 63.9 10.0 72 167-240 26-99 (269)
13 PF01637 Arch_ATPase: Archaeal 97.8 1.5E-05 3.4E-10 67.1 4.0 44 162-207 1-44 (234)
14 PF13401 AAA_22: AAA domain; P 97.8 5.7E-05 1.2E-09 58.2 6.2 60 183-242 4-68 (131)
15 PRK11331 5-methylcytosine-spec 97.7 7.5E-05 1.6E-09 69.5 6.8 66 160-229 175-242 (459)
16 cd00009 AAA The AAA+ (ATPases 97.7 7.7E-05 1.7E-09 57.5 5.0 54 163-220 1-54 (151)
17 PRK07261 topology modulation p 97.6 0.00012 2.7E-09 59.7 6.1 52 185-236 2-56 (171)
18 PF13207 AAA_17: AAA domain; P 97.6 4.3E-05 9.2E-10 58.2 3.0 22 185-206 1-22 (121)
19 TIGR00635 ruvB Holliday juncti 97.5 7.6E-05 1.6E-09 66.3 4.1 48 160-207 4-54 (305)
20 PF05496 RuvB_N: Holliday junc 97.5 0.00018 3.9E-09 61.0 5.5 53 159-213 23-78 (233)
21 smart00763 AAA_PrkA PrkA AAA d 97.5 0.00012 2.5E-09 66.4 4.5 59 160-218 51-118 (361)
22 PRK06696 uridine kinase; Valid 97.5 0.00018 3.8E-09 61.3 5.4 42 165-206 3-45 (223)
23 KOG2543 Origin recognition com 97.4 0.00052 1.1E-08 62.1 7.6 75 158-237 4-81 (438)
24 PRK00080 ruvB Holliday junctio 97.4 0.00018 4E-09 64.8 4.6 48 160-207 25-75 (328)
25 PRK07667 uridine kinase; Provi 97.4 0.00024 5.1E-09 59.2 4.9 38 169-206 3-40 (193)
26 PRK13342 recombination factor 97.3 0.00034 7.3E-09 65.1 5.5 45 160-206 12-59 (413)
27 PF12061 DUF3542: Protein of u 97.3 0.0011 2.3E-08 58.5 7.4 104 5-128 298-401 (402)
28 PF05729 NACHT: NACHT domain 97.2 0.00029 6.3E-09 56.1 3.7 37 184-220 1-41 (166)
29 PRK15455 PrkA family serine pr 97.2 0.00043 9.2E-09 66.2 5.2 45 161-205 77-125 (644)
30 COG1474 CDC6 Cdc6-related prot 97.2 0.0043 9.3E-08 56.8 11.2 77 159-237 16-98 (366)
31 PF00485 PRK: Phosphoribulokin 97.2 0.00028 6E-09 58.7 3.0 22 185-206 1-22 (194)
32 TIGR02903 spore_lon_C ATP-depe 97.2 0.0091 2E-07 58.4 13.8 59 160-220 154-215 (615)
33 PRK05480 uridine/cytidine kina 97.2 0.00034 7.5E-09 58.7 3.5 25 182-206 5-29 (209)
34 PF13238 AAA_18: AAA domain; P 97.1 0.00031 6.8E-09 53.6 2.7 21 186-206 1-21 (129)
35 TIGR00235 udk uridine kinase. 97.1 0.00041 8.8E-09 58.3 3.6 26 181-206 4-29 (207)
36 COG0466 Lon ATP-dependent Lon 97.1 0.00062 1.4E-08 66.0 5.1 54 158-213 321-378 (782)
37 PTZ00112 origin recognition co 97.1 0.0021 4.6E-08 64.2 8.7 83 158-240 753-845 (1164)
38 PRK09270 nucleoside triphospha 97.1 0.00088 1.9E-08 57.2 5.5 27 180-206 30-56 (229)
39 COG0572 Udk Uridine kinase [Nu 97.1 0.0013 2.8E-08 55.5 6.3 26 181-206 6-31 (218)
40 PRK08233 hypothetical protein; 97.1 0.00043 9.3E-09 56.4 3.4 24 183-206 3-26 (182)
41 TIGR02881 spore_V_K stage V sp 97.1 0.00068 1.5E-08 59.1 4.8 46 160-205 6-64 (261)
42 COG1618 Predicted nucleotide k 97.1 0.00054 1.2E-08 55.0 3.4 25 183-207 5-29 (179)
43 TIGR01242 26Sp45 26S proteasom 97.1 0.00068 1.5E-08 62.0 4.5 49 158-206 120-179 (364)
44 KOG2004 Mitochondrial ATP-depe 97.0 0.013 2.9E-07 57.1 13.1 48 158-205 409-460 (906)
45 KOG2028 ATPase related to the 97.0 0.0013 2.7E-08 59.5 5.6 27 182-208 161-187 (554)
46 PRK12402 replication factor C 97.0 0.0009 2E-08 60.1 4.8 45 160-206 15-59 (337)
47 PRK04195 replication factor C 97.0 0.00085 1.8E-08 63.7 4.6 47 160-206 14-62 (482)
48 PF05659 RPW8: Arabidopsis bro 97.0 0.0067 1.5E-07 48.3 8.9 108 2-132 8-115 (147)
49 CHL00095 clpC Clp protease ATP 96.9 0.00097 2.1E-08 67.3 4.7 45 160-206 179-223 (821)
50 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0019 4.1E-08 54.6 5.8 40 165-206 22-61 (226)
51 PRK06762 hypothetical protein; 96.9 0.00077 1.7E-08 54.3 3.2 24 183-206 2-25 (166)
52 TIGR02237 recomb_radB DNA repa 96.9 0.0029 6.2E-08 53.0 6.6 50 179-230 8-58 (209)
53 PTZ00301 uridine kinase; Provi 96.9 0.00085 1.8E-08 56.7 3.3 23 183-205 3-25 (210)
54 PRK05541 adenylylsulfate kinas 96.9 0.001 2.3E-08 54.2 3.8 37 182-220 6-42 (176)
55 PHA02544 44 clamp loader, smal 96.9 0.0015 3.2E-08 58.4 5.0 46 160-206 21-66 (316)
56 PRK06547 hypothetical protein; 96.9 0.0016 3.5E-08 53.2 4.8 26 181-206 13-38 (172)
57 cd02019 NK Nucleoside/nucleoti 96.9 0.00081 1.8E-08 46.3 2.6 22 185-206 1-22 (69)
58 cd02023 UMPK Uridine monophosp 96.9 0.00068 1.5E-08 56.4 2.6 22 185-206 1-22 (198)
59 COG2255 RuvB Holliday junction 96.9 0.0012 2.7E-08 57.6 4.2 47 160-206 26-75 (332)
60 PF13671 AAA_33: AAA domain; P 96.9 0.00089 1.9E-08 52.3 3.0 22 185-206 1-22 (143)
61 COG2256 MGS1 ATPase related to 96.8 0.0012 2.6E-08 60.2 4.2 30 183-214 48-77 (436)
62 PRK00440 rfc replication facto 96.8 0.0015 3.4E-08 58.0 4.8 45 160-206 17-61 (319)
63 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0013 2.9E-08 66.4 4.8 45 160-206 187-231 (852)
64 PRK03992 proteasome-activating 96.8 0.0015 3.2E-08 60.4 4.7 49 158-206 129-188 (389)
65 TIGR01360 aden_kin_iso1 adenyl 96.8 0.00099 2.1E-08 54.6 3.1 25 182-206 2-26 (188)
66 PRK04040 adenylate kinase; Pro 96.8 0.001 2.3E-08 55.1 3.2 24 183-206 2-25 (188)
67 PRK13341 recombination factor 96.8 0.0016 3.4E-08 64.7 4.8 45 160-206 28-75 (725)
68 smart00382 AAA ATPases associa 96.8 0.001 2.3E-08 50.5 2.9 23 184-206 3-25 (148)
69 cd02025 PanK Pantothenate kina 96.7 0.0009 1.9E-08 56.9 2.4 22 185-206 1-22 (220)
70 TIGR02639 ClpA ATP-dependent C 96.7 0.0018 4E-08 64.6 4.9 77 160-238 182-272 (731)
71 PF00004 AAA: ATPase family as 96.7 0.0012 2.6E-08 50.5 2.8 47 186-237 1-54 (132)
72 PRK03839 putative kinase; Prov 96.7 0.0012 2.6E-08 54.0 3.0 22 185-206 2-23 (180)
73 PRK10865 protein disaggregatio 96.7 0.0019 4.1E-08 65.5 4.9 45 160-206 178-222 (857)
74 PF13173 AAA_14: AAA domain 96.7 0.0013 2.9E-08 50.8 3.0 35 183-220 2-36 (128)
75 PF00158 Sigma54_activat: Sigm 96.7 0.0079 1.7E-07 49.0 7.6 71 162-235 1-73 (168)
76 PRK14963 DNA polymerase III su 96.7 0.0021 4.5E-08 61.3 4.7 49 160-209 14-62 (504)
77 PLN03025 replication factor C 96.7 0.0023 4.9E-08 57.5 4.7 45 160-206 13-57 (319)
78 cd02024 NRK1 Nicotinamide ribo 96.7 0.0012 2.5E-08 54.9 2.5 22 185-206 1-22 (187)
79 KOG1532 GTPase XAB1, interacts 96.6 0.0053 1.2E-07 53.4 6.3 63 181-243 17-90 (366)
80 TIGR00764 lon_rel lon-related 96.6 0.006 1.3E-07 59.6 7.4 74 160-239 18-93 (608)
81 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.006 1.3E-07 51.9 6.6 52 179-230 15-72 (235)
82 cd02020 CMPK Cytidine monophos 96.6 0.0014 3E-08 51.4 2.4 22 185-206 1-22 (147)
83 COG1102 Cmk Cytidylate kinase 96.6 0.003 6.5E-08 50.8 4.3 43 185-238 2-44 (179)
84 cd02028 UMPK_like Uridine mono 96.6 0.0014 3.1E-08 53.9 2.6 22 185-206 1-22 (179)
85 PF08477 Miro: Miro-like prote 96.6 0.0018 3.8E-08 48.8 3.0 24 186-209 2-25 (119)
86 TIGR02322 phosphon_PhnN phosph 96.6 0.0019 4.1E-08 52.7 3.1 23 184-206 2-24 (179)
87 PRK05564 DNA polymerase III su 96.6 0.011 2.3E-07 52.9 8.2 77 160-238 4-87 (313)
88 TIGR03263 guanyl_kin guanylate 96.6 0.0018 4E-08 52.8 3.0 23 184-206 2-24 (180)
89 PRK14738 gmk guanylate kinase; 96.5 0.0021 4.6E-08 54.0 3.3 32 175-206 5-36 (206)
90 PF03205 MobB: Molybdopterin g 96.5 0.002 4.4E-08 50.9 3.0 36 184-220 1-36 (140)
91 PRK10751 molybdopterin-guanine 96.5 0.002 4.4E-08 52.7 3.1 25 182-206 5-29 (173)
92 PRK08903 DnaA regulatory inact 96.5 0.0043 9.3E-08 52.7 5.3 25 182-206 41-65 (227)
93 TIGR00554 panK_bact pantothena 96.5 0.0021 4.5E-08 57.0 3.3 25 181-205 60-84 (290)
94 cd01133 F1-ATPase_beta F1 ATP 96.5 0.0031 6.8E-08 55.3 4.3 51 183-235 69-123 (274)
95 COG1428 Deoxynucleoside kinase 96.5 0.002 4.3E-08 54.0 2.9 26 183-208 4-29 (216)
96 TIGR00150 HI0065_YjeE ATPase, 96.5 0.005 1.1E-07 48.2 5.0 40 168-207 7-46 (133)
97 CHL00181 cbbX CbbX; Provisiona 96.5 0.0045 9.8E-08 54.8 5.3 47 160-206 23-82 (287)
98 COG1120 FepC ABC-type cobalami 96.5 0.0038 8.3E-08 54.2 4.6 24 182-205 27-50 (258)
99 PRK05439 pantothenate kinase; 96.5 0.0046 9.9E-08 55.3 5.3 25 181-205 84-108 (311)
100 TIGR00763 lon ATP-dependent pr 96.5 0.028 6.1E-07 56.5 11.5 47 160-206 320-370 (775)
101 PRK14961 DNA polymerase III su 96.5 0.0048 1E-07 56.5 5.5 46 160-206 16-61 (363)
102 PRK14962 DNA polymerase III su 96.5 0.004 8.8E-08 58.9 5.1 46 160-206 14-59 (472)
103 COG1936 Predicted nucleotide k 96.5 0.002 4.4E-08 52.3 2.6 20 185-204 2-21 (180)
104 PRK05896 DNA polymerase III su 96.5 0.0043 9.3E-08 60.0 5.2 46 160-206 16-61 (605)
105 PRK00131 aroK shikimate kinase 96.5 0.0025 5.4E-08 51.4 3.1 24 183-206 4-27 (175)
106 TIGR03346 chaperone_ClpB ATP-d 96.5 0.0036 7.8E-08 63.5 4.9 45 160-206 173-217 (852)
107 PRK00625 shikimate kinase; Pro 96.5 0.0021 4.6E-08 52.6 2.7 22 185-206 2-23 (173)
108 PHA00729 NTP-binding motif con 96.4 0.0047 1E-07 52.6 4.9 24 183-206 17-40 (226)
109 TIGR01359 UMP_CMP_kin_fam UMP- 96.4 0.002 4.4E-08 52.6 2.5 22 185-206 1-22 (183)
110 PRK00889 adenylylsulfate kinas 96.4 0.003 6.5E-08 51.4 3.5 25 182-206 3-27 (175)
111 PRK00300 gmk guanylate kinase; 96.4 0.0024 5.2E-08 53.3 3.0 24 183-206 5-28 (205)
112 PLN02318 phosphoribulokinase/u 96.4 0.0043 9.4E-08 59.7 4.8 34 173-206 55-88 (656)
113 PRK06217 hypothetical protein; 96.4 0.0024 5.2E-08 52.5 2.8 35 185-220 3-39 (183)
114 PF00910 RNA_helicase: RNA hel 96.4 0.0022 4.8E-08 48.1 2.2 20 186-205 1-20 (107)
115 cd01878 HflX HflX subfamily. 96.4 0.012 2.7E-07 48.8 7.0 27 181-207 39-65 (204)
116 PRK03846 adenylylsulfate kinas 96.3 0.0035 7.6E-08 52.2 3.5 26 181-206 22-47 (198)
117 PRK13695 putative NTPase; Prov 96.3 0.0038 8.2E-08 50.8 3.6 22 185-206 2-23 (174)
118 PF00005 ABC_tran: ABC transpo 96.3 0.0032 7E-08 48.8 2.9 23 184-206 12-34 (137)
119 PF00448 SRP54: SRP54-type pro 96.3 0.0086 1.9E-07 50.0 5.7 55 183-239 1-58 (196)
120 PRK13765 ATP-dependent proteas 96.3 0.0086 1.9E-07 58.6 6.4 74 160-238 31-105 (637)
121 PRK09361 radB DNA repair and r 96.3 0.013 2.9E-07 49.6 6.9 49 178-228 18-67 (225)
122 PRK14960 DNA polymerase III su 96.3 0.0064 1.4E-07 59.3 5.4 46 160-206 15-60 (702)
123 PRK13975 thymidylate kinase; P 96.3 0.0035 7.5E-08 51.8 3.2 24 184-207 3-26 (196)
124 cd02021 GntK Gluconate kinase 96.3 0.0028 6.2E-08 50.1 2.5 22 185-206 1-22 (150)
125 cd04139 RalA_RalB RalA/RalB su 96.3 0.0037 8E-08 49.4 3.2 23 185-207 2-24 (164)
126 PRK13949 shikimate kinase; Pro 96.3 0.0031 6.8E-08 51.3 2.8 22 185-206 3-24 (169)
127 PRK10078 ribose 1,5-bisphospho 96.3 0.0034 7.3E-08 51.8 3.0 23 184-206 3-25 (186)
128 PRK06893 DNA replication initi 96.3 0.0039 8.5E-08 53.3 3.4 23 184-206 40-62 (229)
129 PRK10787 DNA-binding ATP-depen 96.3 0.038 8.2E-07 55.6 10.8 49 158-206 320-372 (784)
130 cd00464 SK Shikimate kinase (S 96.3 0.0032 7E-08 49.7 2.7 21 186-206 2-22 (154)
131 PF00625 Guanylate_kin: Guanyl 96.2 0.0051 1.1E-07 50.5 3.9 36 183-220 2-37 (183)
132 PRK13947 shikimate kinase; Pro 96.2 0.0033 7.1E-08 50.8 2.7 22 185-206 3-24 (171)
133 COG0194 Gmk Guanylate kinase [ 96.2 0.0067 1.4E-07 49.9 4.4 34 183-220 4-37 (191)
134 PF04665 Pox_A32: Poxvirus A32 96.2 0.0057 1.2E-07 52.6 4.2 36 183-220 13-48 (241)
135 COG1100 GTPase SAR1 and relate 96.2 0.0032 7E-08 52.7 2.7 24 184-207 6-29 (219)
136 TIGR00073 hypB hydrogenase acc 96.2 0.0042 9.2E-08 52.1 3.4 26 181-206 20-45 (207)
137 PRK04841 transcriptional regul 96.2 0.018 3.9E-07 58.6 8.5 67 160-237 14-83 (903)
138 PRK14949 DNA polymerase III su 96.2 0.019 4E-07 57.9 8.3 47 160-207 16-62 (944)
139 PTZ00454 26S protease regulato 96.2 0.007 1.5E-07 56.1 5.0 47 160-206 145-202 (398)
140 PRK09435 membrane ATPase/prote 96.2 0.0081 1.8E-07 54.2 5.3 38 169-206 42-79 (332)
141 COG2019 AdkA Archaeal adenylat 96.2 0.0043 9.4E-08 50.1 3.0 24 183-206 4-27 (189)
142 cd00227 CPT Chloramphenicol (C 96.2 0.004 8.7E-08 50.8 3.0 23 184-206 3-25 (175)
143 cd00071 GMPK Guanosine monopho 96.2 0.0036 7.8E-08 49.1 2.6 22 185-206 1-22 (137)
144 PRK11034 clpA ATP-dependent Cl 96.2 0.006 1.3E-07 60.9 4.6 59 160-220 186-248 (758)
145 PRK14530 adenylate kinase; Pro 96.2 0.004 8.6E-08 52.6 2.9 22 185-206 5-26 (215)
146 PF07693 KAP_NTPase: KAP famil 96.1 0.025 5.4E-07 50.5 8.2 74 166-239 2-83 (325)
147 PF01926 MMR_HSR1: 50S ribosom 96.1 0.0044 9.6E-08 46.7 2.8 21 186-206 2-22 (116)
148 TIGR00176 mobB molybdopterin-g 96.1 0.0038 8.3E-08 50.1 2.6 22 185-206 1-22 (155)
149 PRK05201 hslU ATP-dependent pr 96.1 0.017 3.7E-07 53.6 7.1 47 160-206 15-73 (443)
150 PF03308 ArgK: ArgK protein; 96.1 0.009 1.9E-07 51.8 4.9 39 168-206 14-52 (266)
151 PRK08727 hypothetical protein; 96.1 0.013 2.8E-07 50.3 5.8 36 183-220 41-76 (233)
152 TIGR01313 therm_gnt_kin carboh 96.1 0.0035 7.6E-08 50.3 2.2 21 186-206 1-21 (163)
153 PRK07003 DNA polymerase III su 96.1 0.022 4.8E-07 56.4 8.0 46 160-206 16-61 (830)
154 PF07728 AAA_5: AAA domain (dy 96.1 0.0045 9.7E-08 48.2 2.7 21 186-206 2-22 (139)
155 COG1116 TauB ABC-type nitrate/ 96.1 0.0046 1E-07 53.1 2.9 23 183-205 29-51 (248)
156 COG0467 RAD55 RecA-superfamily 96.1 0.016 3.5E-07 50.3 6.5 54 178-233 18-71 (260)
157 PRK10463 hydrogenase nickel in 96.1 0.017 3.6E-07 51.1 6.4 26 181-206 102-127 (290)
158 cd00820 PEPCK_HprK Phosphoenol 96.1 0.0059 1.3E-07 45.9 3.0 22 183-204 15-36 (107)
159 PF03266 NTPase_1: NTPase; In 96.1 0.0048 1E-07 50.3 2.8 22 186-207 2-23 (168)
160 cd02027 APSK Adenosine 5'-phos 96.0 0.0043 9.3E-08 49.4 2.4 22 185-206 1-22 (149)
161 TIGR01287 nifH nitrogenase iro 96.0 0.0042 9.1E-08 54.4 2.6 23 184-206 1-23 (275)
162 cd01120 RecA-like_NTPases RecA 96.0 0.0063 1.4E-07 47.9 3.4 34 185-220 1-34 (165)
163 PRK00771 signal recognition pa 96.0 0.049 1.1E-06 51.1 9.8 55 182-238 94-151 (437)
164 PRK14957 DNA polymerase III su 96.0 0.0095 2.1E-07 57.3 5.2 46 160-206 16-61 (546)
165 cd01393 recA_like RecA is a b 96.0 0.021 4.5E-07 48.3 6.8 50 178-229 14-71 (226)
166 PF03029 ATP_bind_1: Conserved 96.0 0.0042 9.1E-08 53.5 2.5 22 188-209 1-22 (238)
167 TIGR00750 lao LAO/AO transport 96.0 0.008 1.7E-07 53.5 4.4 37 170-206 21-57 (300)
168 COG1124 DppF ABC-type dipeptid 96.0 0.005 1.1E-07 52.7 2.9 23 183-205 33-55 (252)
169 cd04163 Era Era subfamily. Er 96.0 0.0064 1.4E-07 47.7 3.4 24 183-206 3-26 (168)
170 cd01862 Rab7 Rab7 subfamily. 96.0 0.0051 1.1E-07 49.2 2.8 22 185-206 2-23 (172)
171 smart00173 RAS Ras subfamily o 96.0 0.0062 1.3E-07 48.4 3.2 22 185-206 2-23 (164)
172 PRK08084 DNA replication initi 96.0 0.012 2.5E-07 50.6 5.1 24 183-206 45-68 (235)
173 PTZ00361 26 proteosome regulat 96.0 0.0095 2.1E-07 55.8 4.9 47 160-206 183-240 (438)
174 cd04159 Arl10_like Arl10-like 96.0 0.0063 1.4E-07 47.4 3.2 21 186-206 2-22 (159)
175 COG0237 CoaE Dephospho-CoA kin 96.0 0.0055 1.2E-07 51.4 3.0 23 183-205 2-24 (201)
176 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.0 0.0054 1.2E-07 51.7 3.0 24 183-206 30-53 (218)
177 cd03225 ABC_cobalt_CbiO_domain 96.0 0.0055 1.2E-07 51.3 3.0 24 183-206 27-50 (211)
178 cd04119 RJL RJL (RabJ-Like) su 96.0 0.0056 1.2E-07 48.5 2.9 22 186-207 3-24 (168)
179 COG1126 GlnQ ABC-type polar am 96.0 0.016 3.6E-07 48.9 5.7 36 182-220 27-62 (240)
180 cd04155 Arl3 Arl3 subfamily. 96.0 0.0053 1.1E-07 49.3 2.8 24 183-206 14-37 (173)
181 PF13521 AAA_28: AAA domain; P 96.0 0.004 8.6E-08 50.1 2.0 21 186-206 2-22 (163)
182 TIGR00390 hslU ATP-dependent p 96.0 0.027 5.9E-07 52.3 7.6 47 160-206 12-70 (441)
183 PLN02796 D-glycerate 3-kinase 96.0 0.0064 1.4E-07 55.0 3.5 25 182-206 99-123 (347)
184 PRK14493 putative bifunctional 96.0 0.0055 1.2E-07 53.9 3.0 23 184-206 2-24 (274)
185 cd01131 PilT Pilus retraction 96.0 0.0085 1.8E-07 50.0 4.0 23 184-206 2-24 (198)
186 PRK14955 DNA polymerase III su 96.0 0.011 2.3E-07 54.9 5.0 47 160-207 16-62 (397)
187 TIGR02880 cbbX_cfxQ probable R 96.0 0.011 2.5E-07 52.2 5.0 45 161-205 23-80 (284)
188 PLN02348 phosphoribulokinase 96.0 0.0099 2.1E-07 54.6 4.6 27 180-206 46-72 (395)
189 PRK14956 DNA polymerase III su 96.0 0.011 2.4E-07 55.8 5.0 46 160-206 18-63 (484)
190 PRK09087 hypothetical protein; 95.9 0.0061 1.3E-07 52.1 3.1 24 183-206 44-67 (226)
191 PRK04301 radA DNA repair and r 95.9 0.027 5.8E-07 50.5 7.4 62 175-237 94-161 (317)
192 TIGR00960 3a0501s02 Type II (G 95.9 0.0061 1.3E-07 51.3 3.0 24 183-206 29-52 (216)
193 TIGR00231 small_GTP small GTP- 95.9 0.0062 1.3E-07 47.1 2.9 23 185-207 3-25 (161)
194 cd01672 TMPK Thymidine monopho 95.9 0.0063 1.4E-07 50.0 3.0 22 185-206 2-23 (200)
195 TIGR02236 recomb_radA DNA repa 95.9 0.031 6.6E-07 49.9 7.7 59 178-237 90-154 (310)
196 PRK04182 cytidylate kinase; Pr 95.9 0.0064 1.4E-07 49.2 3.1 22 185-206 2-23 (180)
197 PRK14527 adenylate kinase; Pro 95.9 0.0068 1.5E-07 50.1 3.2 25 182-206 5-29 (191)
198 PRK10536 hypothetical protein; 95.9 0.018 3.9E-07 50.0 5.9 55 160-218 55-109 (262)
199 PRK06620 hypothetical protein; 95.9 0.0062 1.3E-07 51.6 3.0 24 184-207 45-68 (214)
200 COG0563 Adk Adenylate kinase a 95.9 0.0057 1.2E-07 50.3 2.7 22 185-206 2-23 (178)
201 cd03116 MobB Molybdenum is an 95.9 0.0071 1.5E-07 48.8 3.2 23 184-206 2-24 (159)
202 TIGR01166 cbiO cobalt transpor 95.9 0.0064 1.4E-07 50.1 3.0 24 183-206 18-41 (190)
203 TIGR03689 pup_AAA proteasome A 95.9 0.0096 2.1E-07 56.8 4.5 48 160-207 182-240 (512)
204 PRK05057 aroK shikimate kinase 95.9 0.0063 1.4E-07 49.6 2.9 24 183-206 4-27 (172)
205 cd01130 VirB11-like_ATPase Typ 95.9 0.013 2.7E-07 48.4 4.7 36 167-205 12-47 (186)
206 TIGR02030 BchI-ChlI magnesium 95.9 0.011 2.4E-07 53.5 4.7 44 160-205 4-47 (337)
207 TIGR03499 FlhF flagellar biosy 95.9 0.0068 1.5E-07 53.5 3.3 43 182-224 193-236 (282)
208 TIGR02173 cyt_kin_arch cytidyl 95.9 0.0066 1.4E-07 48.8 3.0 22 185-206 2-23 (171)
209 cd03238 ABC_UvrA The excision 95.9 0.0066 1.4E-07 49.8 3.0 23 183-205 21-43 (176)
210 PF01583 APS_kinase: Adenylyls 95.9 0.0086 1.9E-07 48.1 3.5 36 183-220 2-37 (156)
211 cd03297 ABC_ModC_molybdenum_tr 95.9 0.007 1.5E-07 50.9 3.2 25 181-206 22-46 (214)
212 PRK11889 flhF flagellar biosyn 95.9 0.011 2.4E-07 54.5 4.6 25 182-206 240-264 (436)
213 CHL00081 chlI Mg-protoporyphyr 95.9 0.0089 1.9E-07 54.3 4.0 45 160-206 17-61 (350)
214 cd03229 ABC_Class3 This class 95.9 0.0069 1.5E-07 49.5 3.0 23 183-205 26-48 (178)
215 PRK12339 2-phosphoglycerate ki 95.9 0.0077 1.7E-07 50.4 3.4 24 183-206 3-26 (197)
216 cd00154 Rab Rab family. Rab G 95.9 0.0069 1.5E-07 47.2 2.9 22 186-207 3-24 (159)
217 COG3640 CooC CO dehydrogenase 95.9 0.012 2.7E-07 50.1 4.5 21 185-205 2-22 (255)
218 PRK13232 nifH nitrogenase redu 95.9 0.006 1.3E-07 53.4 2.8 22 184-205 2-23 (273)
219 COG1763 MobB Molybdopterin-gua 95.9 0.0063 1.4E-07 49.2 2.6 23 183-205 2-24 (161)
220 smart00175 RAB Rab subfamily o 95.9 0.0069 1.5E-07 47.9 2.9 22 186-207 3-24 (164)
221 cd02117 NifH_like This family 95.8 0.0062 1.4E-07 51.2 2.7 22 184-205 1-22 (212)
222 PRK08356 hypothetical protein; 95.8 0.0076 1.6E-07 50.1 3.2 22 183-204 5-26 (195)
223 cd03261 ABC_Org_Solvent_Resist 95.8 0.007 1.5E-07 51.7 3.0 24 183-206 26-49 (235)
224 cd02022 DPCK Dephospho-coenzym 95.8 0.0061 1.3E-07 50.0 2.5 21 185-205 1-21 (179)
225 TIGR00064 ftsY signal recognit 95.8 0.013 2.8E-07 51.5 4.8 26 181-206 70-95 (272)
226 PRK06761 hypothetical protein; 95.8 0.014 2.9E-07 51.6 4.8 35 184-219 4-38 (282)
227 cd00876 Ras Ras family. The R 95.8 0.0081 1.8E-07 47.1 3.2 21 186-206 2-22 (160)
228 PRK09825 idnK D-gluconate kina 95.8 0.0074 1.6E-07 49.5 3.0 23 184-206 4-26 (176)
229 cd03269 ABC_putative_ATPase Th 95.8 0.0071 1.5E-07 50.7 3.0 24 183-206 26-49 (210)
230 cd04113 Rab4 Rab4 subfamily. 95.8 0.0073 1.6E-07 47.9 2.9 22 186-207 3-24 (161)
231 PRK05642 DNA replication initi 95.8 0.021 4.5E-07 49.0 5.8 36 183-220 45-80 (234)
232 cd03263 ABC_subfamily_A The AB 95.8 0.0074 1.6E-07 50.9 3.0 24 183-206 28-51 (220)
233 TIGR02315 ABC_phnC phosphonate 95.8 0.0073 1.6E-07 51.8 3.0 24 183-206 28-51 (243)
234 cd03293 ABC_NrtD_SsuB_transpor 95.8 0.0074 1.6E-07 51.0 3.0 24 183-206 30-53 (220)
235 cd04138 H_N_K_Ras_like H-Ras/N 95.8 0.0085 1.8E-07 47.1 3.2 22 186-207 4-25 (162)
236 TIGR02673 FtsE cell division A 95.8 0.0077 1.7E-07 50.6 3.0 24 183-206 28-51 (214)
237 PRK13230 nitrogenase reductase 95.8 0.0069 1.5E-07 53.2 2.8 22 184-205 2-23 (279)
238 PRK14737 gmk guanylate kinase; 95.8 0.0091 2E-07 49.4 3.4 25 182-206 3-27 (186)
239 cd01876 YihA_EngB The YihA (En 95.8 0.0069 1.5E-07 47.7 2.6 20 186-205 2-21 (170)
240 cd03259 ABC_Carb_Solutes_like 95.8 0.0079 1.7E-07 50.5 3.0 24 183-206 26-49 (213)
241 cd03256 ABC_PhnC_transporter A 95.8 0.0077 1.7E-07 51.5 3.0 24 183-206 27-50 (241)
242 cd03235 ABC_Metallic_Cations A 95.8 0.0076 1.6E-07 50.6 2.9 24 183-206 25-48 (213)
243 COG1136 SalX ABC-type antimicr 95.8 0.0081 1.8E-07 51.2 3.0 23 183-205 31-53 (226)
244 cd01983 Fer4_NifH The Fer4_Nif 95.8 0.0073 1.6E-07 43.1 2.4 22 185-206 1-22 (99)
245 PRK13531 regulatory ATPase Rav 95.8 0.015 3.2E-07 55.0 5.0 43 160-206 20-62 (498)
246 PRK13541 cytochrome c biogenes 95.8 0.0081 1.8E-07 49.8 3.0 24 183-206 26-49 (195)
247 PF07726 AAA_3: ATPase family 95.8 0.0042 9E-08 48.2 1.1 27 186-214 2-28 (131)
248 PRK10584 putative ABC transpor 95.8 0.0081 1.7E-07 51.0 3.0 24 183-206 36-59 (228)
249 cd03222 ABC_RNaseL_inhibitor T 95.7 0.0075 1.6E-07 49.5 2.7 24 183-206 25-48 (177)
250 cd03260 ABC_PstB_phosphate_tra 95.7 0.0082 1.8E-07 50.9 3.1 24 183-206 26-49 (227)
251 TIGR02397 dnaX_nterm DNA polym 95.7 0.018 3.9E-07 52.1 5.5 46 160-206 14-59 (355)
252 PLN02200 adenylate kinase fami 95.7 0.0098 2.1E-07 51.1 3.5 25 182-206 42-66 (234)
253 PRK10416 signal recognition pa 95.7 0.0088 1.9E-07 53.7 3.3 25 182-206 113-137 (318)
254 cd03292 ABC_FtsE_transporter F 95.7 0.0085 1.8E-07 50.3 3.0 24 183-206 27-50 (214)
255 cd03226 ABC_cobalt_CbiO_domain 95.7 0.0085 1.8E-07 50.0 3.0 24 183-206 26-49 (205)
256 TIGR02239 recomb_RAD51 DNA rep 95.7 0.039 8.5E-07 49.5 7.5 63 175-238 88-156 (316)
257 COG1125 OpuBA ABC-type proline 95.7 0.024 5.2E-07 49.1 5.7 53 183-238 27-86 (309)
258 cd03264 ABC_drug_resistance_li 95.7 0.0076 1.6E-07 50.5 2.7 22 185-206 27-48 (211)
259 cd03265 ABC_DrrA DrrA is the A 95.7 0.0085 1.8E-07 50.6 3.0 24 183-206 26-49 (220)
260 cd03224 ABC_TM1139_LivF_branch 95.7 0.0088 1.9E-07 50.5 3.1 24 183-206 26-49 (222)
261 cd00879 Sar1 Sar1 subfamily. 95.7 0.016 3.5E-07 47.4 4.6 24 183-206 19-42 (190)
262 TIGR03864 PQQ_ABC_ATP ABC tran 95.7 0.0085 1.8E-07 51.2 3.0 24 183-206 27-50 (236)
263 cd02026 PRK Phosphoribulokinas 95.7 0.007 1.5E-07 53.2 2.6 22 185-206 1-22 (273)
264 PRK08099 bifunctional DNA-bind 95.7 0.0077 1.7E-07 55.8 2.9 25 182-206 218-242 (399)
265 cd02040 NifH NifH gene encodes 95.7 0.0075 1.6E-07 52.4 2.7 23 184-206 2-24 (270)
266 TIGR02211 LolD_lipo_ex lipopro 95.7 0.0086 1.9E-07 50.5 3.0 24 183-206 31-54 (221)
267 cd01394 radB RadB. The archaea 95.7 0.038 8.2E-07 46.5 7.0 38 181-220 17-54 (218)
268 PF10662 PduV-EutP: Ethanolami 95.7 0.009 1.9E-07 47.3 2.8 24 184-207 2-25 (143)
269 cd03296 ABC_CysA_sulfate_impor 95.7 0.0087 1.9E-07 51.2 3.0 24 183-206 28-51 (239)
270 PRK01184 hypothetical protein; 95.7 0.0089 1.9E-07 49.0 2.9 19 184-202 2-20 (184)
271 PRK13236 nitrogenase reductase 95.7 0.0098 2.1E-07 52.9 3.4 26 180-205 3-28 (296)
272 cd03257 ABC_NikE_OppD_transpor 95.7 0.0088 1.9E-07 50.6 3.0 24 183-206 31-54 (228)
273 cd04123 Rab21 Rab21 subfamily. 95.7 0.0092 2E-07 46.9 2.9 22 186-207 3-24 (162)
274 PRK12608 transcription termina 95.7 0.024 5.3E-07 51.8 5.9 68 170-239 121-192 (380)
275 KOG0991 Replication factor C, 95.7 0.015 3.3E-07 49.7 4.2 43 160-204 27-69 (333)
276 cd03114 ArgK-like The function 95.6 0.0077 1.7E-07 48.0 2.3 22 185-206 1-22 (148)
277 cd01864 Rab19 Rab19 subfamily. 95.6 0.0092 2E-07 47.6 2.8 23 184-206 4-26 (165)
278 PRK13538 cytochrome c biogenes 95.6 0.0095 2.1E-07 49.8 3.0 24 183-206 27-50 (204)
279 TIGR02528 EutP ethanolamine ut 95.6 0.0091 2E-07 46.4 2.7 22 186-207 3-24 (142)
280 PRK13768 GTPase; Provisional 95.6 0.0094 2E-07 51.8 3.0 24 183-206 2-25 (253)
281 PRK13233 nifH nitrogenase redu 95.6 0.0089 1.9E-07 52.3 2.9 22 184-205 3-24 (275)
282 cd00878 Arf_Arl Arf (ADP-ribos 95.6 0.0092 2E-07 47.1 2.8 22 186-207 2-23 (158)
283 PRK13946 shikimate kinase; Pro 95.6 0.0093 2E-07 49.1 2.8 24 183-206 10-33 (184)
284 PRK15177 Vi polysaccharide exp 95.6 0.0093 2E-07 50.3 2.9 24 183-206 13-36 (213)
285 cd01428 ADK Adenylate kinase ( 95.6 0.009 2E-07 49.1 2.8 21 186-206 2-22 (194)
286 TIGR02902 spore_lonB ATP-depen 95.6 0.014 3.1E-07 56.1 4.5 44 160-205 65-108 (531)
287 PF00071 Ras: Ras family; Int 95.6 0.011 2.5E-07 46.7 3.2 22 186-207 2-23 (162)
288 PRK07994 DNA polymerase III su 95.6 0.019 4.2E-07 56.2 5.4 47 160-207 16-62 (647)
289 PRK11629 lolD lipoprotein tran 95.6 0.0098 2.1E-07 50.7 3.0 24 183-206 35-58 (233)
290 cd04124 RabL2 RabL2 subfamily. 95.6 0.01 2.2E-07 47.4 2.9 21 186-206 3-23 (161)
291 TIGR03608 L_ocin_972_ABC putat 95.6 0.01 2.2E-07 49.5 3.0 24 183-206 24-47 (206)
292 TIGR01241 FtsH_fam ATP-depende 95.6 0.015 3.3E-07 55.4 4.6 48 160-207 55-112 (495)
293 cd01898 Obg Obg subfamily. Th 95.6 0.0092 2E-07 47.6 2.7 21 186-206 3-23 (170)
294 cd03237 ABC_RNaseL_inhibitor_d 95.6 0.0098 2.1E-07 51.4 3.0 24 183-206 25-48 (246)
295 PF13086 AAA_11: AAA domain; P 95.6 0.018 3.8E-07 48.3 4.5 50 185-234 19-75 (236)
296 PRK11248 tauB taurine transpor 95.6 0.0098 2.1E-07 51.6 3.0 24 183-206 27-50 (255)
297 PRK10247 putative ABC transpor 95.6 0.01 2.2E-07 50.4 3.1 24 183-206 33-56 (225)
298 cd03258 ABC_MetN_methionine_tr 95.6 0.01 2.2E-07 50.6 3.0 24 183-206 31-54 (233)
299 PRK12377 putative replication 95.6 0.02 4.4E-07 49.6 4.9 36 183-220 101-136 (248)
300 cd04136 Rap_like Rap-like subf 95.6 0.012 2.5E-07 46.6 3.2 22 185-206 3-24 (163)
301 cd03219 ABC_Mj1267_LivG_branch 95.6 0.0098 2.1E-07 50.7 2.9 24 183-206 26-49 (236)
302 cd03301 ABC_MalK_N The N-termi 95.6 0.01 2.3E-07 49.7 3.0 24 183-206 26-49 (213)
303 PRK14958 DNA polymerase III su 95.6 0.018 3.9E-07 55.1 5.0 47 160-207 16-62 (509)
304 cd00157 Rho Rho (Ras homology) 95.6 0.01 2.3E-07 47.3 2.9 22 186-207 3-24 (171)
305 COG0542 clpA ATP-binding subun 95.6 0.014 3.1E-07 57.8 4.3 80 159-240 169-262 (786)
306 TIGR01184 ntrCD nitrate transp 95.6 0.01 2.3E-07 50.5 3.0 24 183-206 11-34 (230)
307 TIGR02770 nickel_nikD nickel i 95.6 0.01 2.2E-07 50.5 3.0 24 183-206 12-35 (230)
308 cd04171 SelB SelB subfamily. 95.5 0.011 2.3E-07 46.7 2.9 21 185-205 2-22 (164)
309 cd04160 Arfrp1 Arfrp1 subfamil 95.5 0.01 2.2E-07 47.3 2.7 20 186-205 2-21 (167)
310 PRK06835 DNA replication prote 95.5 0.41 8.9E-06 43.3 13.3 23 184-206 184-206 (329)
311 PRK00698 tmk thymidylate kinas 95.5 0.012 2.6E-07 48.9 3.2 23 184-206 4-26 (205)
312 cd03218 ABC_YhbG The ABC trans 95.5 0.011 2.3E-07 50.3 3.0 24 183-206 26-49 (232)
313 PRK14964 DNA polymerase III su 95.5 0.017 3.7E-07 54.8 4.6 45 160-205 13-57 (491)
314 TIGR01978 sufC FeS assembly AT 95.5 0.011 2.3E-07 50.7 3.0 24 183-206 26-49 (243)
315 PRK03731 aroL shikimate kinase 95.5 0.011 2.3E-07 47.9 2.8 23 184-206 3-25 (171)
316 PLN03187 meiotic recombination 95.5 0.036 7.8E-07 50.3 6.4 57 181-238 124-186 (344)
317 PRK11124 artP arginine transpo 95.5 0.011 2.4E-07 50.7 3.0 24 183-206 28-51 (242)
318 PF03193 DUF258: Protein of un 95.5 0.02 4.3E-07 46.3 4.3 36 167-207 24-59 (161)
319 cd01673 dNK Deoxyribonucleosid 95.5 0.0094 2E-07 49.2 2.5 22 185-206 1-22 (193)
320 PRK13235 nifH nitrogenase redu 95.5 0.0096 2.1E-07 52.1 2.7 22 184-205 2-23 (274)
321 TIGR01243 CDC48 AAA family ATP 95.5 0.018 3.9E-07 57.6 4.9 47 160-206 178-235 (733)
322 TIGR03574 selen_PSTK L-seryl-t 95.5 0.0091 2E-07 51.6 2.5 22 185-206 1-22 (249)
323 cd01860 Rab5_related Rab5-rela 95.5 0.011 2.5E-07 46.7 2.9 22 186-207 4-25 (163)
324 TIGR00041 DTMP_kinase thymidyl 95.5 0.013 2.7E-07 48.4 3.2 24 184-207 4-27 (195)
325 cd03115 SRP The signal recogni 95.5 0.012 2.5E-07 47.8 3.0 22 185-206 2-23 (173)
326 PRK10908 cell division protein 95.5 0.012 2.5E-07 49.9 3.0 24 183-206 28-51 (222)
327 PRK14722 flhF flagellar biosyn 95.5 0.032 6.8E-07 51.2 6.0 41 183-223 137-178 (374)
328 cd04177 RSR1 RSR1 subgroup. R 95.5 0.013 2.8E-07 47.0 3.2 22 186-207 4-25 (168)
329 PRK14970 DNA polymerase III su 95.5 0.024 5.1E-07 51.8 5.3 46 160-206 17-62 (367)
330 cd02029 PRK_like Phosphoribulo 95.5 0.04 8.6E-07 48.2 6.3 22 185-206 1-22 (277)
331 COG4608 AppF ABC-type oligopep 95.5 0.011 2.3E-07 51.5 2.8 54 182-238 38-98 (268)
332 PF08298 AAA_PrkA: PrkA AAA do 95.5 0.024 5.3E-07 51.3 5.1 76 159-239 60-148 (358)
333 cd03266 ABC_NatA_sodium_export 95.5 0.012 2.5E-07 49.6 3.0 24 183-206 31-54 (218)
334 TIGR00602 rad24 checkpoint pro 95.5 0.021 4.6E-07 55.8 5.2 49 158-206 82-133 (637)
335 COG1223 Predicted ATPase (AAA+ 95.5 0.023 5E-07 49.3 4.8 50 159-208 120-176 (368)
336 PRK13231 nitrogenase reductase 95.5 0.012 2.5E-07 51.3 3.1 23 184-206 3-25 (264)
337 cd03232 ABC_PDR_domain2 The pl 95.5 0.012 2.6E-07 48.7 3.0 24 183-206 33-56 (192)
338 TIGR01189 ccmA heme ABC export 95.5 0.012 2.6E-07 48.8 3.1 24 183-206 26-49 (198)
339 PRK15453 phosphoribulokinase; 95.5 0.014 3E-07 51.4 3.4 24 182-205 4-27 (290)
340 cd03262 ABC_HisP_GlnQ_permease 95.5 0.012 2.6E-07 49.3 3.0 24 183-206 26-49 (213)
341 PRK13540 cytochrome c biogenes 95.5 0.012 2.7E-07 48.9 3.0 25 182-206 26-50 (200)
342 TIGR00972 3a0107s01c2 phosphat 95.5 0.012 2.5E-07 50.7 3.0 23 183-205 27-49 (247)
343 cd03295 ABC_OpuCA_Osmoprotecti 95.4 0.012 2.6E-07 50.5 3.1 24 183-206 27-50 (242)
344 cd03268 ABC_BcrA_bacitracin_re 95.4 0.012 2.7E-07 49.1 3.0 24 183-206 26-49 (208)
345 TIGR02324 CP_lyasePhnL phospho 95.4 0.012 2.6E-07 49.7 3.0 24 183-206 34-57 (224)
346 PLN03046 D-glycerate 3-kinase; 95.4 0.014 3.1E-07 54.0 3.6 25 181-205 210-234 (460)
347 PRK08691 DNA polymerase III su 95.4 0.021 4.5E-07 56.2 4.9 46 160-206 16-61 (709)
348 PRK14242 phosphate transporter 95.4 0.012 2.7E-07 50.7 3.1 23 183-205 32-54 (253)
349 TIGR01425 SRP54_euk signal rec 95.4 0.041 8.9E-07 51.4 6.6 25 182-206 99-123 (429)
350 PRK13539 cytochrome c biogenes 95.4 0.013 2.8E-07 49.1 3.0 25 182-206 27-51 (207)
351 TIGR01281 DPOR_bchL light-inde 95.4 0.011 2.5E-07 51.4 2.8 21 185-205 2-22 (268)
352 PRK11247 ssuB aliphatic sulfon 95.4 0.012 2.7E-07 51.1 3.0 24 183-206 38-61 (257)
353 cd03233 ABC_PDR_domain1 The pl 95.4 0.012 2.7E-07 49.1 2.9 24 183-206 33-56 (202)
354 cd03246 ABCC_Protease_Secretio 95.4 0.013 2.9E-07 47.6 3.1 24 183-206 28-51 (173)
355 PRK14532 adenylate kinase; Pro 95.4 0.012 2.5E-07 48.4 2.7 21 186-206 3-23 (188)
356 PF02562 PhoH: PhoH-like prote 95.4 0.023 5.1E-07 47.7 4.5 53 164-220 4-56 (205)
357 PRK13948 shikimate kinase; Pro 95.4 0.014 2.9E-07 48.2 3.1 25 182-206 9-33 (182)
358 PF01078 Mg_chelatase: Magnesi 95.4 0.031 6.7E-07 46.9 5.2 42 160-205 3-44 (206)
359 cd03278 ABC_SMC_barmotin Barmo 95.4 0.012 2.6E-07 49.1 2.8 20 185-204 24-43 (197)
360 cd04140 ARHI_like ARHI subfami 95.4 0.013 2.8E-07 46.8 2.9 21 186-206 4-24 (165)
361 PRK14969 DNA polymerase III su 95.4 0.024 5.1E-07 54.5 5.1 46 160-206 16-61 (527)
362 cd04137 RheB Rheb (Ras Homolog 95.4 0.012 2.7E-07 47.5 2.8 22 185-206 3-24 (180)
363 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.014 3E-07 46.1 3.0 24 183-206 26-49 (144)
364 cd03214 ABC_Iron-Siderophores_ 95.4 0.014 3E-07 47.8 3.0 35 183-220 25-59 (180)
365 PRK14247 phosphate ABC transpo 95.4 0.013 2.8E-07 50.5 3.0 24 183-206 29-52 (250)
366 PF06309 Torsin: Torsin; Inte 95.4 0.04 8.6E-07 42.6 5.3 47 160-206 25-76 (127)
367 PRK14241 phosphate transporter 95.4 0.013 2.8E-07 50.8 3.0 24 183-206 30-53 (258)
368 cd01858 NGP_1 NGP-1. Autoanti 95.4 0.033 7.2E-07 44.4 5.2 44 164-207 82-126 (157)
369 cd03252 ABCC_Hemolysin The ABC 95.4 0.013 2.9E-07 50.0 3.0 24 183-206 28-51 (237)
370 PRK08533 flagellar accessory p 95.4 0.04 8.6E-07 47.2 5.9 49 181-232 22-71 (230)
371 PRK09544 znuC high-affinity zi 95.4 0.013 2.9E-07 50.7 3.0 24 183-206 30-53 (251)
372 PRK11300 livG leucine/isoleuci 95.4 0.014 3E-07 50.5 3.1 24 183-206 31-54 (255)
373 COG3899 Predicted ATPase [Gene 95.4 0.025 5.5E-07 57.3 5.4 46 161-206 1-47 (849)
374 TIGR00101 ureG urease accessor 95.4 0.015 3.3E-07 48.6 3.3 23 184-206 2-24 (199)
375 PF00308 Bac_DnaA: Bacterial d 95.3 0.042 9E-07 46.7 6.0 44 163-206 12-57 (219)
376 PRK06645 DNA polymerase III su 95.3 0.024 5.2E-07 54.1 5.0 47 160-207 21-67 (507)
377 PRK13648 cbiO cobalt transport 95.3 0.032 7E-07 48.7 5.5 24 183-206 35-58 (269)
378 PRK14245 phosphate ABC transpo 95.3 0.014 2.9E-07 50.4 3.0 22 183-204 29-50 (250)
379 PRK12323 DNA polymerase III su 95.3 0.024 5.1E-07 55.4 4.9 47 160-207 16-62 (700)
380 cd03216 ABC_Carb_Monos_I This 95.3 0.015 3.2E-07 46.9 3.0 24 183-206 26-49 (163)
381 cd03223 ABCD_peroxisomal_ALDP 95.3 0.015 3.2E-07 47.1 3.0 24 183-206 27-50 (166)
382 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.3 0.014 3E-07 46.5 2.9 22 185-206 4-25 (166)
383 cd03230 ABC_DR_subfamily_A Thi 95.3 0.015 3.2E-07 47.3 3.0 24 183-206 26-49 (173)
384 cd04101 RabL4 RabL4 (Rab-like4 95.3 0.014 3E-07 46.4 2.8 20 186-205 3-22 (164)
385 PRK10895 lipopolysaccharide AB 95.3 0.014 2.9E-07 50.1 3.0 24 183-206 29-52 (241)
386 COG1121 ZnuC ABC-type Mn/Zn tr 95.3 0.013 2.9E-07 50.7 2.9 23 183-205 30-52 (254)
387 PF13604 AAA_30: AAA domain; P 95.3 0.028 6.2E-07 46.8 4.8 36 169-206 6-41 (196)
388 PLN03186 DNA repair protein RA 95.3 0.048 1E-06 49.5 6.6 62 176-238 116-183 (342)
389 TIGR00455 apsK adenylylsulfate 95.3 0.017 3.8E-07 47.3 3.5 25 182-206 17-41 (184)
390 PRK14951 DNA polymerase III su 95.3 0.025 5.4E-07 55.2 5.1 45 160-205 16-60 (618)
391 PRK14250 phosphate ABC transpo 95.3 0.014 3E-07 50.1 3.0 24 183-206 29-52 (241)
392 cd04146 RERG_RasL11_like RERG/ 95.3 0.016 3.4E-07 46.3 3.1 20 186-205 2-21 (165)
393 PRK02496 adk adenylate kinase; 95.3 0.013 2.8E-07 48.0 2.7 22 185-206 3-24 (184)
394 cd03267 ABC_NatA_like Similar 95.3 0.014 3.1E-07 49.9 3.0 24 183-206 47-70 (236)
395 PRK14274 phosphate ABC transpo 95.3 0.014 3E-07 50.6 3.0 23 183-205 38-60 (259)
396 TIGR02640 gas_vesic_GvpN gas v 95.3 0.017 3.8E-07 50.3 3.6 20 186-205 24-43 (262)
397 PRK10575 iron-hydroxamate tran 95.3 0.013 2.9E-07 51.0 2.9 24 183-206 37-60 (265)
398 cd03247 ABCC_cytochrome_bd The 95.3 0.015 3.3E-07 47.5 3.0 24 183-206 28-51 (178)
399 PRK11264 putative amino-acid A 95.3 0.014 3.1E-07 50.2 3.1 24 183-206 29-52 (250)
400 PRK14239 phosphate transporter 95.3 0.014 3.1E-07 50.3 3.0 23 183-205 31-53 (252)
401 cd03215 ABC_Carb_Monos_II This 95.3 0.015 3.2E-07 47.7 3.0 24 183-206 26-49 (182)
402 PTZ00088 adenylate kinase 1; P 95.3 0.013 2.8E-07 50.2 2.7 21 186-206 9-29 (229)
403 TIGR01277 thiQ thiamine ABC tr 95.3 0.015 3.2E-07 48.9 3.0 24 183-206 24-47 (213)
404 TIGR00017 cmk cytidylate kinas 95.3 0.015 3.2E-07 49.4 3.0 23 184-206 3-25 (217)
405 PRK09493 glnQ glutamine ABC tr 95.3 0.014 3.1E-07 49.9 3.0 24 183-206 27-50 (240)
406 smart00178 SAR Sar1p-like memb 95.3 0.027 5.9E-07 46.1 4.5 36 170-206 5-40 (184)
407 PRK14256 phosphate ABC transpo 95.3 0.015 3.2E-07 50.3 3.0 24 183-206 30-53 (252)
408 TIGR03410 urea_trans_UrtE urea 95.3 0.015 3.2E-07 49.4 3.0 24 183-206 26-49 (230)
409 PRK07429 phosphoribulokinase; 95.3 0.017 3.7E-07 52.1 3.5 26 181-206 6-31 (327)
410 cd03228 ABCC_MRP_Like The MRP 95.3 0.016 3.5E-07 47.0 3.1 24 183-206 28-51 (171)
411 PRK14974 cell division protein 95.3 0.017 3.7E-07 52.3 3.4 54 182-237 139-195 (336)
412 PRK00089 era GTPase Era; Revie 95.2 0.017 3.6E-07 51.0 3.4 25 182-206 4-28 (292)
413 PRK14531 adenylate kinase; Pro 95.2 0.016 3.4E-07 47.7 3.0 23 184-206 3-25 (183)
414 PRK06995 flhF flagellar biosyn 95.2 0.029 6.3E-07 53.1 5.1 43 183-225 256-299 (484)
415 TIGR02238 recomb_DMC1 meiotic 95.2 0.057 1.2E-06 48.5 6.7 60 178-238 91-156 (313)
416 cd04115 Rab33B_Rab33A Rab33B/R 95.2 0.015 3.3E-07 46.7 2.8 23 184-206 3-25 (170)
417 PF05621 TniB: Bacterial TniB 95.2 0.2 4.3E-06 44.5 9.9 84 159-243 33-127 (302)
418 cd03231 ABC_CcmA_heme_exporter 95.2 0.016 3.5E-07 48.3 3.0 24 183-206 26-49 (201)
419 PRK14721 flhF flagellar biosyn 95.2 0.03 6.5E-07 52.2 5.1 24 182-205 190-213 (420)
420 cd03294 ABC_Pro_Gly_Bertaine T 95.2 0.015 3.3E-07 50.8 3.0 24 183-206 50-73 (269)
421 PRK13649 cbiO cobalt transport 95.2 0.015 3.3E-07 51.1 3.0 24 183-206 33-56 (280)
422 PRK13638 cbiO cobalt transport 95.2 0.015 3.2E-07 50.9 2.9 24 183-206 27-50 (271)
423 PHA02530 pseT polynucleotide k 95.2 0.016 3.5E-07 51.2 3.2 23 184-206 3-25 (300)
424 cd03251 ABCC_MsbA MsbA is an e 95.2 0.016 3.4E-07 49.4 3.0 24 183-206 28-51 (234)
425 cd04162 Arl9_Arfrp2_like Arl9/ 95.2 0.015 3.3E-07 46.6 2.8 21 186-206 2-22 (164)
426 TIGR01188 drrA daunorubicin re 95.2 0.015 3.3E-07 51.7 3.0 24 183-206 19-42 (302)
427 PRK15056 manganese/iron transp 95.2 0.015 3.3E-07 50.8 3.0 24 183-206 33-56 (272)
428 PRK10744 pstB phosphate transp 95.2 0.015 3.3E-07 50.5 2.9 24 183-206 39-62 (260)
429 PRK11831 putative ABC transpor 95.2 0.016 3.4E-07 50.7 3.0 24 183-206 33-56 (269)
430 cd03253 ABCC_ATM1_transporter 95.2 0.016 3.4E-07 49.4 3.0 24 183-206 27-50 (236)
431 TIGR03005 ectoine_ehuA ectoine 95.2 0.016 3.4E-07 50.1 3.0 24 183-206 26-49 (252)
432 cd01124 KaiC KaiC is a circadi 95.2 0.042 9.2E-07 44.7 5.4 44 186-231 2-45 (187)
433 PRK14954 DNA polymerase III su 95.2 0.025 5.4E-07 55.3 4.6 47 160-207 16-62 (620)
434 PRK14238 phosphate transporter 95.2 0.016 3.4E-07 50.8 3.0 23 183-205 50-72 (271)
435 cd03245 ABCC_bacteriocin_expor 95.2 0.016 3.5E-07 48.8 3.0 25 182-206 29-53 (220)
436 PRK11701 phnK phosphonate C-P 95.2 0.016 3.5E-07 50.2 3.0 24 183-206 32-55 (258)
437 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.2 0.016 3.5E-07 49.5 3.0 24 183-206 29-52 (238)
438 cd02032 Bchl_like This family 95.2 0.015 3.3E-07 50.6 2.9 21 185-205 2-22 (267)
439 PRK10619 histidine/lysine/argi 95.2 0.016 3.5E-07 50.2 3.0 24 183-206 31-54 (257)
440 PRK14267 phosphate ABC transpo 95.2 0.016 3.5E-07 50.0 3.0 24 183-206 30-53 (253)
441 PRK10865 protein disaggregatio 95.2 0.053 1.1E-06 55.2 7.1 48 159-206 567-621 (857)
442 PRK13645 cbiO cobalt transport 95.2 0.016 3.5E-07 51.2 3.0 24 183-206 37-60 (289)
443 cd03298 ABC_ThiQ_thiamine_tran 95.2 0.017 3.6E-07 48.4 3.0 24 183-206 24-47 (211)
444 cd01897 NOG NOG1 is a nucleola 95.2 0.016 3.6E-07 46.1 2.8 23 185-207 2-24 (168)
445 PRK14262 phosphate ABC transpo 95.2 0.017 3.6E-07 49.8 3.0 23 183-205 29-51 (250)
446 PRK14490 putative bifunctional 95.2 0.016 3.4E-07 53.2 3.0 25 182-206 4-28 (369)
447 PF14532 Sigma54_activ_2: Sigm 95.2 0.013 2.7E-07 45.9 2.1 45 163-207 1-45 (138)
448 cd01868 Rab11_like Rab11-like. 95.2 0.017 3.7E-07 45.9 2.9 24 184-207 4-27 (165)
449 COG3842 PotA ABC-type spermidi 95.2 0.016 3.4E-07 52.7 2.9 22 184-205 32-53 (352)
450 cd04135 Tc10 TC10 subfamily. 95.2 0.021 4.6E-07 45.8 3.5 21 186-206 3-23 (174)
451 cd03290 ABCC_SUR1_N The SUR do 95.2 0.017 3.7E-07 48.7 3.0 24 183-206 27-50 (218)
452 PRK11022 dppD dipeptide transp 95.2 0.015 3.3E-07 52.4 2.8 24 183-206 33-56 (326)
453 PRK07940 DNA polymerase III su 95.1 0.033 7.2E-07 51.5 5.1 46 160-205 5-58 (394)
454 PRK13407 bchI magnesium chelat 95.1 0.025 5.3E-07 51.2 4.1 44 160-205 8-51 (334)
455 TIGR02016 BchX chlorophyllide 95.1 0.015 3.3E-07 51.7 2.8 22 184-205 1-22 (296)
456 PLN00020 ribulose bisphosphate 95.1 0.017 3.7E-07 52.7 3.1 27 181-207 146-172 (413)
457 CHL00176 ftsH cell division pr 95.1 0.02 4.3E-07 56.2 3.8 48 160-207 183-240 (638)
458 cd03234 ABCG_White The White s 95.1 0.018 4E-07 48.8 3.2 24 183-206 33-56 (226)
459 COG1703 ArgK Putative periplas 95.1 0.03 6.4E-07 49.5 4.5 63 169-231 37-101 (323)
460 cd04175 Rap1 Rap1 subgroup. T 95.1 0.02 4.2E-07 45.6 3.2 22 185-206 3-24 (164)
461 CHL00131 ycf16 sulfate ABC tra 95.1 0.017 3.6E-07 49.9 2.9 24 183-206 33-56 (252)
462 cd04156 ARLTS1 ARLTS1 subfamil 95.1 0.017 3.7E-07 45.6 2.8 22 186-207 2-23 (160)
463 TIGR03873 F420-0_ABC_ATP propo 95.1 0.017 3.6E-07 50.1 3.0 24 183-206 27-50 (256)
464 PRK14235 phosphate transporter 95.1 0.017 3.7E-07 50.4 3.1 23 183-205 45-67 (267)
465 PRK13543 cytochrome c biogenes 95.1 0.017 3.8E-07 48.6 3.0 24 183-206 37-60 (214)
466 cd04161 Arl2l1_Arl13_like Arl2 95.1 0.017 3.7E-07 46.5 2.8 21 186-206 2-22 (167)
467 PRK14273 phosphate ABC transpo 95.1 0.017 3.8E-07 49.9 3.0 23 183-205 33-55 (254)
468 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.1 0.017 3.7E-07 49.1 2.9 24 183-206 48-71 (224)
469 PRK05537 bifunctional sulfate 95.1 0.034 7.4E-07 53.9 5.3 49 158-206 367-415 (568)
470 cd00880 Era_like Era (E. coli 95.1 0.011 2.3E-07 45.8 1.6 19 188-206 1-19 (163)
471 PRK14259 phosphate ABC transpo 95.1 0.017 3.7E-07 50.5 3.0 24 183-206 39-62 (269)
472 KOG3347 Predicted nucleotide k 95.1 0.016 3.5E-07 46.1 2.5 23 183-205 7-29 (176)
473 PRK14237 phosphate transporter 95.1 0.017 3.8E-07 50.4 3.1 24 183-206 46-69 (267)
474 PRK09183 transposase/IS protei 95.1 0.017 3.6E-07 50.4 2.9 23 184-206 103-125 (259)
475 PRK00454 engB GTP-binding prot 95.1 0.019 4.1E-07 47.1 3.1 25 182-206 23-47 (196)
476 PRK14243 phosphate transporter 95.1 0.018 3.8E-07 50.2 3.1 23 183-205 36-58 (264)
477 KOG3308 Uncharacterized protei 95.1 0.023 5E-07 47.3 3.5 24 182-205 3-26 (225)
478 PRK11608 pspF phage shock prot 95.1 0.065 1.4E-06 48.3 6.8 46 160-205 6-51 (326)
479 cd04145 M_R_Ras_like M-Ras/R-R 95.1 0.018 3.8E-07 45.6 2.8 22 185-206 4-25 (164)
480 PRK14248 phosphate ABC transpo 95.1 0.017 3.7E-07 50.4 3.0 23 183-205 47-69 (268)
481 PRK14730 coaE dephospho-CoA ki 95.1 0.019 4E-07 47.9 3.0 22 184-205 2-23 (195)
482 PRK05703 flhF flagellar biosyn 95.1 0.029 6.3E-07 52.4 4.6 24 183-206 221-244 (424)
483 cd03283 ABC_MutS-like MutS-lik 95.1 0.018 3.9E-07 48.1 2.9 22 184-205 26-47 (199)
484 cd01866 Rab2 Rab2 subfamily. 95.1 0.018 3.9E-07 46.2 2.8 23 184-206 5-27 (168)
485 COG0410 LivF ABC-type branched 95.1 0.019 4.1E-07 48.8 3.0 26 182-207 28-53 (237)
486 COG3638 ABC-type phosphate/pho 95.1 0.019 4E-07 49.1 2.9 23 183-205 30-52 (258)
487 PRK13640 cbiO cobalt transport 95.1 0.018 3.8E-07 50.8 3.0 24 183-206 33-56 (282)
488 PRK14261 phosphate ABC transpo 95.1 0.018 3.8E-07 49.8 2.9 23 183-205 32-54 (253)
489 PRK13632 cbiO cobalt transport 95.1 0.018 3.9E-07 50.4 3.0 24 183-206 35-58 (271)
490 PRK13185 chlL protochlorophyll 95.1 0.019 4E-07 50.1 3.1 22 184-205 3-24 (270)
491 PRK10418 nikD nickel transport 95.1 0.018 4E-07 49.8 3.0 24 183-206 29-52 (254)
492 cd04103 Centaurin_gamma Centau 95.1 0.018 4E-07 46.0 2.8 19 186-204 3-21 (158)
493 PRK09580 sufC cysteine desulfu 95.1 0.018 3.8E-07 49.5 2.9 24 183-206 27-50 (248)
494 TIGR01351 adk adenylate kinase 95.1 0.017 3.7E-07 48.5 2.7 21 186-206 2-22 (210)
495 PHA02575 1 deoxynucleoside mon 95.1 0.018 4E-07 48.9 2.9 21 185-205 2-22 (227)
496 COG0468 RecA RecA/RadA recombi 95.1 0.073 1.6E-06 46.9 6.7 51 178-230 55-107 (279)
497 cd00983 recA RecA is a bacter 95.1 0.045 9.7E-07 49.3 5.5 40 179-220 51-90 (325)
498 PF03215 Rad17: Rad17 cell cyc 95.0 0.041 8.9E-07 52.7 5.5 57 160-220 19-78 (519)
499 PRK14240 phosphate transporter 95.0 0.019 4.1E-07 49.5 3.0 23 183-205 29-51 (250)
500 PRK11231 fecE iron-dicitrate t 95.0 0.019 4E-07 49.7 3.0 24 183-206 28-51 (255)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.93 E-value=9.5e-25 Score=216.46 Aligned_cols=224 Identities=18% Similarity=0.214 Sum_probs=167.9
Q ss_pred CcchHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHH
Q 038685 1 MDINFRLFSERLRRLVEGEEGTLPDAAKEQFQNLYTEIEIVTSLLSNYENDMFQILFQSLGGEEEFDFSELQGILKEMKD 80 (265)
Q Consensus 1 ~~~~v~~~~~kl~~~l~~~e~~~~~~~~~~~~~L~~~l~~l~~~l~~ae~~~~~~~~~~~~~~~~~~~~~v~~Wl~~lr~ 80 (265)
|++.++..++|+.+++. +++..+.+.+.++..|++.|..++++++++++ + +... ..+..|...+++
T Consensus 1 ~~~~~s~~~~~~~~~l~-~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a---------~---~~~~-~~~~~~~e~~~~ 66 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLN-RESECLDGKDNYILELKENLKALQSALEDLDA---------K---RDDL-ERRVNWEEDVGD 66 (889)
T ss_pred CCeEEEEehhhHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh---------h---cchH-HHHHHHHHHHHH
Confidence 67788888999999999 99999999999999999999999999999999 7 7777 889999999999
Q ss_pred HHHhhHHHHHHHHHhhhhhccCCCcc-------c-cchhhhhhHHHHHHHHHHHHHhHhhcccccchhhhhccccCCCC-
Q 038685 81 FVHESEKVIYIFMISRITQQISGSSS-------K-DLFDALLGLQSQIIDIKQQLQQFRPNTIGLWVELKSYFIEARNS- 151 (265)
Q Consensus 81 ~~~~~eDild~~~~~~~~~~~~~~~~-------~-~~~~~~~~i~~~i~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~- 151 (265)
+.|+++|+++.+.......+..+..+ + +...+.++.+..+..+..++..+.+..+.+..............
T Consensus 67 ~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~ 146 (889)
T KOG4658|consen 67 LVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDP 146 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccc
Confidence 99999999999988776543222211 1 22234444444444444444444333333310000000000000
Q ss_pred ---C-CCCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhccc-ccccCCeeEEEe--CCCC
Q 038685 152 ---S-STAGSKKRNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNY-MKNYFYCRAWVG--CEYY 224 (265)
Q Consensus 152 ---~-~s~~~~~~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~-v~~~F~~~~wV~--~~~~ 224 (265)
. ..+.....+ ||.+..++++++.|+.++. .+|||+||||+||||||+.|||+.. ++.+|+.+|||+ ++|+
T Consensus 147 ~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~ 223 (889)
T KOG4658|consen 147 REKVETRPIQSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFT 223 (889)
T ss_pred hhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccccc
Confidence 1 111223334 9999999999999998774 9999999999999999999999988 999999999999 9999
Q ss_pred HHHHHHHHHHHhCCCCC
Q 038685 225 LHKVLDNIIKSVMPRSM 241 (265)
Q Consensus 225 ~~~l~~~Il~~l~~~~~ 241 (265)
..+++++|++.++....
T Consensus 224 ~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 224 TRKIQQTILERLGLLDE 240 (889)
T ss_pred HHhHHHHHHHHhccCCc
Confidence 99999999999987443
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.55 E-value=3.1e-14 Score=125.24 Aligned_cols=96 Identities=25% Similarity=0.316 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe--CCCCHHHHHHHHHHHhCCCCCC
Q 038685 165 LEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG--CEYYLHKVLDNIIKSVMPRSMG 242 (265)
Q Consensus 165 ~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~--~~~~~~~l~~~Il~~l~~~~~~ 242 (265)
||.++++|.++|....++.++|+|+||||+||||||+.+|++..++.+|+.++||. +..+...+++.|++++......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 68899999999998667899999999999999999999999878999999999999 7788899999999999987543
Q ss_pred C-ccCChHHhHHHHHHhhc
Q 038685 243 S-EIMDKDYELKITTDTTR 260 (265)
Q Consensus 243 ~-~~~~~~~~~~~~~d~lr 260 (265)
. ...+.+.....+.+.|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~ 99 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK 99 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC
T ss_pred cccccccccccccchhhhc
Confidence 3 23333334444444443
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.07 E-value=3.6e-10 Score=117.09 Aligned_cols=61 Identities=26% Similarity=0.468 Sum_probs=53.8
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 158 KKRNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
..+++||++..++++..+|.-+.+..++|+||||||+||||||+.+|+ .+..+|+..+|+.
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~ 242 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFID 242 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEee
Confidence 446899999999999999865666799999999999999999999999 5778999988874
No 4
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.44 E-value=3.6e-07 Score=79.15 Aligned_cols=53 Identities=13% Similarity=-0.120 Sum_probs=45.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe----CCCCHHHHHHHHHHHh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG----CEYYLHKVLDNIIKSV 236 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~----~~~~~~~l~~~Il~~l 236 (265)
-..++|+|.+|+|||||++.+|++.... +|++++||+ +.+++.++++.|...+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~ 72 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEV 72 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEE
Confidence 4678999999999999999999976554 999999998 4489999999994443
No 5
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.44 E-value=2.1e-07 Score=84.68 Aligned_cols=51 Identities=16% Similarity=-0.108 Sum_probs=43.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe--CCC--CHHHHHHHHHH
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG--CEY--YLHKVLDNIIK 234 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~--~~~--~~~~l~~~Il~ 234 (265)
-.-.+|+|++|+||||||+.||++...+ ||++++||. .++ .+.+++++|+.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg 223 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKG 223 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcC
Confidence 4567899999999999999999986555 999999998 666 78889988874
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.43 E-value=2.3e-06 Score=78.80 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=60.0
Q ss_pred CCCcccccHHHHHHHHHHHhcC--CCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe--CCCCHHHHHHHHH
Q 038685 158 KKRNIVGLEDEMKELLDLLIVG--EPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG--CEYYLHKVLDNII 233 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~~--~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~--~~~~~~~l~~~Il 233 (265)
.++.++||+++.++|...|... ......+-|+|++|+||||+++.++++.......-..++|. ...+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 4568999999999999998442 22344567999999999999999999643322123345555 4456788999999
Q ss_pred HHhCC
Q 038685 234 KSVMP 238 (265)
Q Consensus 234 ~~l~~ 238 (265)
+++..
T Consensus 108 ~~l~~ 112 (394)
T PRK00411 108 RQLFG 112 (394)
T ss_pred HHhcC
Confidence 99976
No 7
>PTZ00202 tuzin; Provisional
Probab=98.38 E-value=1.1e-05 Score=74.40 Aligned_cols=98 Identities=16% Similarity=0.097 Sum_probs=70.5
Q ss_pred CCCCCCCcccccHHHHHHHHHHHhcCC-CCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEeCCCCHHHHHHHH
Q 038685 154 TAGSKKRNIVGLEDEMKELLDLLIVGE-PSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVGCEYYLHKVLDNI 232 (265)
Q Consensus 154 s~~~~~~~~vG~e~~~~~l~~~L~~~~-~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~~~~~~~~l~~~I 232 (265)
+.+.+..+++||+.+...|...|...+ ....++.|.|++|+|||||++.+..... ..+++....+..++++.|
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNprg~eElLr~L 329 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVRGTEDTLRSV 329 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCCCHHHHHHHH
Confidence 344566899999999999999886533 2356999999999999999999997432 224444223889999999
Q ss_pred HHHhCCCCCCCccCChHHhHHHHHHhhcc
Q 038685 233 IKSVMPRSMGSEIMDKDYELKITTDTTRP 261 (265)
Q Consensus 233 l~~l~~~~~~~~~~~~~~~~~~~~d~lr~ 261 (265)
+.+|+.... ......+..+.+.+.+
T Consensus 330 L~ALGV~p~----~~k~dLLrqIqeaLl~ 354 (550)
T PTZ00202 330 VKALGVPNV----EACGDLLDFISEACRR 354 (550)
T ss_pred HHHcCCCCc----ccHHHHHHHHHHHHHH
Confidence 999997321 2233455666666543
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.30 E-value=6.7e-06 Score=74.90 Aligned_cols=80 Identities=20% Similarity=0.115 Sum_probs=58.5
Q ss_pred CCCcccccHHHHHHHHHHHhcC--CCCeEEEEEEcCCCCChhHHHHHHhhccccc-ccC---CeeEEEe--CCCCHHHHH
Q 038685 158 KKRNIVGLEDEMKELLDLLIVG--EPSLSVVAIVGSSGFDKTDFAGEAYNSNYMK-NYF---YCRAWVG--CEYYLHKVL 229 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~~--~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~-~~F---~~~~wV~--~~~~~~~l~ 229 (265)
.++.++||+.+.++|..+|... ......+-|+|++|+||||+++.++++..-. ... -..+||. ...+...++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 4468999999999999998641 2334568899999999999999999853211 111 1345666 444678899
Q ss_pred HHHHHHhC
Q 038685 230 DNIIKSVM 237 (265)
Q Consensus 230 ~~Il~~l~ 237 (265)
..|++++.
T Consensus 93 ~~i~~~l~ 100 (365)
T TIGR02928 93 VELANQLR 100 (365)
T ss_pred HHHHHHHh
Confidence 99999995
No 9
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.23 E-value=3e-06 Score=69.21 Aligned_cols=50 Identities=28% Similarity=0.321 Sum_probs=33.9
Q ss_pred cccccHHHHHHHHHHHh-cCCCCeEEEEEEcCCCCChhHHHHHHhhccccc
Q 038685 161 NIVGLEDEMKELLDLLI-VGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMK 210 (265)
Q Consensus 161 ~~vG~e~~~~~l~~~L~-~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~ 210 (265)
.++||+++.+++...|. ......+.+-|+|.+|+|||||++.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999994 223457899999999999999999999864443
No 10
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.05 E-value=6.6e-06 Score=75.36 Aligned_cols=55 Identities=13% Similarity=-0.104 Sum_probs=45.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe----CCCCHHHHHHHHHHHhCC
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG----CEYYLHKVLDNIIKSVMP 238 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~----~~~~~~~l~~~Il~~l~~ 238 (265)
-..++|+|.+|+|||||++.|++.... +||++.+||. +..++.++++.|+..+-.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vva 226 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVA 226 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEE
Confidence 467899999999999999999997444 3899999998 448999999999665543
No 11
>PRK08118 topology modulation protein; Reviewed
Probab=98.03 E-value=7.1e-06 Score=66.83 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=30.7
Q ss_pred EEEEEcCCCCChhHHHHHHhhccccc-ccCCeeEEEe
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNSNYMK-NYFYCRAWVG 220 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~~~v~-~~F~~~~wV~ 220 (265)
.|.|+|++|+||||||+.+++...+. -+||..+|-.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~ 39 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP 39 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 58899999999999999999976665 5788888654
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.87 E-value=0.00011 Score=63.86 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcC-CCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-CCCCHHHHHHHHHHHhCCCC
Q 038685 167 DEMKELLDLLIVG-EPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-CEYYLHKVLDNIIKSVMPRS 240 (265)
Q Consensus 167 ~~~~~l~~~L~~~-~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-~~~~~~~l~~~Il~~l~~~~ 240 (265)
.....+...|... .....++.|+|++|+|||||++.+++..... .+ +.+|+. ...+..+++..|...++...
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~~~~~~~~~~l~~i~~~lG~~~ 99 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKLVNTRVDAEDLLRMVAADFGLET 99 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeeeeCCCCCHHHHHHHHHHHcCCCC
Confidence 3334455544322 2235688999999999999999999964422 11 334555 66788899999999887653
No 13
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.84 E-value=1.5e-05 Score=67.08 Aligned_cols=44 Identities=30% Similarity=0.390 Sum_probs=36.2
Q ss_pred ccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 162 IVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 162 ~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
++||+.+.+.|.+++..+. ...+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 5899999999999987654 6778899999999999999999953
No 14
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.80 E-value=5.7e-05 Score=58.17 Aligned_cols=60 Identities=12% Similarity=0.070 Sum_probs=41.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhccccc---ccCCeeEEEe--CCCCHHHHHHHHHHHhCCCCCC
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMK---NYFYCRAWVG--CEYYLHKVLDNIIKSVMPRSMG 242 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~---~~F~~~~wV~--~~~~~~~l~~~Il~~l~~~~~~ 242 (265)
-+++.|+|.+|+||||+++.+.+...-. ..-...+|+. ...+...+...|++++......
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 68 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS 68 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc
Confidence 4678999999999999999999852110 0023456888 4448999999999999987654
No 15
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.72 E-value=7.5e-05 Score=69.50 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=52.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe--CCCCHHHHH
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG--CEYYLHKVL 229 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~--~~~~~~~l~ 229 (265)
.++++.++..+.+...|... +.|.++|++|+||||+|+.+.+......+|+.+.||+ +.++..+++
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHh
Confidence 46888899999999988753 4667899999999999999998765556788888988 666665554
No 16
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.66 E-value=7.7e-05 Score=57.53 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=38.5
Q ss_pred cccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 163 VGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 163 vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
+|++.....+...+... ....+-|+|.+|+|||||++.+++... ..-...+++.
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~ 54 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLN 54 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEe
Confidence 36777777887777553 356788999999999999999999532 1123345555
No 17
>PRK07261 topology modulation protein; Provisional
Probab=97.63 E-value=0.00012 Score=59.70 Aligned_cols=52 Identities=17% Similarity=0.110 Sum_probs=34.9
Q ss_pred EEEEEcCCCCChhHHHHHHhhccccc-ccCCeeEEEe--CCCCHHHHHHHHHHHh
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNSNYMK-NYFYCRAWVG--CEYYLHKVLDNIIKSV 236 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~~~v~-~~F~~~~wV~--~~~~~~~l~~~Il~~l 236 (265)
.|.|+|++|+||||||+.+.....+. -+.|...|-. ...+..++...+..-+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHH
Confidence 48999999999999999998753322 2566666765 4444555555444433
No 18
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.62 E-value=4.3e-05 Score=58.20 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
||.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999885
No 19
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.55 E-value=7.6e-05 Score=66.34 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=39.2
Q ss_pred CcccccHHHHHHHHHHHhcC---CCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 160 RNIVGLEDEMKELLDLLIVG---EPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~---~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.+++|++..++.|..++... ......+-++|++|+||||||+.+.+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999998888532 2335567799999999999999999853
No 20
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.51 E-value=0.00018 Score=61.03 Aligned_cols=53 Identities=23% Similarity=0.253 Sum_probs=35.7
Q ss_pred CCcccccHHHHHHHHHHHhc---CCCCeEEEEEEcCCCCChhHHHHHHhhcccccccC
Q 038685 159 KRNIVGLEDEMKELLDLLIV---GEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYF 213 (265)
Q Consensus 159 ~~~~vG~e~~~~~l~~~L~~---~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F 213 (265)
-+++||-+.-++.+.-++.. ..+.+.-+-.||++|+||||||+.|-+. ....|
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~ 78 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNF 78 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--E
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCe
Confidence 37899998888877655542 2345777889999999999999999995 44444
No 21
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.50 E-value=0.00012 Score=66.40 Aligned_cols=59 Identities=14% Similarity=0.299 Sum_probs=47.9
Q ss_pred CcccccHHHHHHHHHHHhcC----CCCeEEEEEEcCCCCChhHHHHHHhhcccc-----cccCCeeEE
Q 038685 160 RNIVGLEDEMKELLDLLIVG----EPSLSVVAIVGSSGFDKTDFAGEAYNSNYM-----KNYFYCRAW 218 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~----~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v-----~~~F~~~~w 218 (265)
.+++|.++.++++++++... ....+++.++|++|+||||||+.+.+.-.. .+.|...-|
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 48999999999999999642 335689999999999999999999885432 236777777
No 22
>PRK06696 uridine kinase; Validated
Probab=97.49 E-value=0.00018 Score=61.27 Aligned_cols=42 Identities=29% Similarity=0.273 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHhc-CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 165 LEDEMKELLDLLIV-GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 165 ~e~~~~~l~~~L~~-~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
|.+-.++|.+.+.. ......+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 55667788887764 3456889999999999999999999884
No 23
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.43 E-value=0.00052 Score=62.11 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=63.2
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCC-eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe--CCCCHHHHHHHHHH
Q 038685 158 KKRNIVGLEDEMKELLDLLIVGEPS-LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG--CEYYLHKVLDNIIK 234 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~~~~~-~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~--~~~~~~~l~~~Il~ 234 (265)
.++.+.+|+.....|..++...+.. ++.|-|+|..|.|||.+++.+++..+. ..+|++ ..|+...++..|+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHH
Confidence 3467889999999999988766543 455689999999999999999997533 359999 88999999999999
Q ss_pred HhC
Q 038685 235 SVM 237 (265)
Q Consensus 235 ~l~ 237 (265)
+++
T Consensus 79 ~~~ 81 (438)
T KOG2543|consen 79 KSQ 81 (438)
T ss_pred Hhc
Confidence 996
No 24
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.40 E-value=0.00018 Score=64.79 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=39.5
Q ss_pred CcccccHHHHHHHHHHHhc---CCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 160 RNIVGLEDEMKELLDLLIV---GEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~---~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.+++|++..++.+..++.. .......+-++|++|+||||||+.+.+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 6799999999999887753 23345677899999999999999999853
No 25
>PRK07667 uridine kinase; Provisional
Probab=97.40 E-value=0.00024 Score=59.16 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 169 MKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 169 ~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+.+.+.|....+...+|+|-|.+|+||||||+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45667777665566789999999999999999999884
No 26
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.32 E-value=0.00034 Score=65.12 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=34.6
Q ss_pred CcccccHHHHHH---HHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKE---LLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~---l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+++||.+..... |..++..+. ...+-++|++|+||||||+.+.+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 568887776555 666665443 556778999999999999999884
No 27
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=97.26 E-value=0.0011 Score=58.49 Aligned_cols=104 Identities=17% Similarity=0.115 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHHHh
Q 038685 5 FRLFSERLRRLVEGEEGTLPDAAKEQFQNLYTEIEIVTSLLSNYENDMFQILFQSLGGEEEFDFSELQGILKEMKDFVHE 84 (265)
Q Consensus 5 v~~~~~kl~~~l~~~e~~~~~~~~~~~~~L~~~l~~l~~~l~~ae~~~~~~~~~~~~~~~~~~~~~v~~Wl~~lr~~~~~ 84 (265)
|..++++|..... ...+.+.-++.+++-++.+++.+++||+..-. .+ ...- ...+.+..++.+.+|+
T Consensus 298 VdFlL~NLkdfq~-rysdSlaflKnQiqvIQ~elesLqpFLk~V~e---------e~--~nkh-~~~ed~a~~ii~kAye 364 (402)
T PF12061_consen 298 VDFLLKNLKDFQG-RYSDSLAFLKNQIQVIQTELESLQPFLKHVVE---------EP--HNKH-DTNEDCATQIIRKAYE 364 (402)
T ss_pred HHHHHhhHHHHhc-cccchHHHHHHHHHHHHHHHHHhhHHHHHHHh---------cc--chhh-hhhhhHHHHHHHHHhh
Confidence 5678889999888 88888999999999999999999999999854 21 3333 4589999999999999
Q ss_pred hHHHHHHHHHhhhhhccCCCccccchhhhhhHHHHHHHHHHHHH
Q 038685 85 SEKVIYIFMISRITQQISGSSSKDLFDALLGLQSQIIDIKQQLQ 128 (265)
Q Consensus 85 ~eDild~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~l~ 128 (265)
+|.++|-|..+.. +.| +...+...+...|+-++++++
T Consensus 365 vEYVVDaCi~k~~---P~W----cl~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 365 VEYVVDACISKSV---PHW----CLERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred eeeeeehhhcCCC---cHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 9999998854432 113 223566777788887777765
No 28
>PF05729 NACHT: NACHT domain
Probab=97.25 E-value=0.00029 Score=56.10 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhhccccccc----CCeeEEEe
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSNYMKNY----FYCRAWVG 220 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~~v~~~----F~~~~wV~ 220 (265)
+++-|+|.+|+||||+++.+..+-.-... |...+|++
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~ 41 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS 41 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe
Confidence 47889999999999999999986433332 45666776
No 29
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.24 E-value=0.00043 Score=66.24 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=39.6
Q ss_pred cccccHHHHHHHHHHHhc----CCCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 161 NIVGLEDEMKELLDLLIV----GEPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 161 ~~vG~e~~~~~l~~~L~~----~~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+++|.++.++.+++.|.. .+..-+++.++|++|+||||||+.|.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 689999999999999932 344568999999999999999999998
No 30
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0043 Score=56.83 Aligned_cols=77 Identities=19% Similarity=0.184 Sum_probs=57.8
Q ss_pred CCcccccHHHHHHHHHHHhc---CCCCeEEEEEEcCCCCChhHHHHHHhhcccccc-cCCeeEEEe--CCCCHHHHHHHH
Q 038685 159 KRNIVGLEDEMKELLDLLIV---GEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKN-YFYCRAWVG--CEYYLHKVLDNI 232 (265)
Q Consensus 159 ~~~~vG~e~~~~~l~~~L~~---~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~-~F~~~~wV~--~~~~~~~l~~~I 232 (265)
++.+.+|+.+..++...|.. +. ...-+-|+|..|.|||+.++.|.+..+... ..+ .+.|. ...++..++..|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~-~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGE-RPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCC-CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHH
Confidence 34599999999999988853 22 222288999999999999999999532221 122 56776 556789999999
Q ss_pred HHHhC
Q 038685 233 IKSVM 237 (265)
Q Consensus 233 l~~l~ 237 (265)
+++++
T Consensus 94 ~~~~~ 98 (366)
T COG1474 94 LNKLG 98 (366)
T ss_pred HHHcC
Confidence 99997
No 31
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.19 E-value=0.00028 Score=58.71 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
||+|.|.+|+||||||+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999884
No 32
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.18 E-value=0.0091 Score=58.42 Aligned_cols=59 Identities=24% Similarity=0.188 Sum_probs=44.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCC---eeEEEe
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFY---CRAWVG 220 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~---~~~wV~ 220 (265)
++++|.+..+..+...+... ....+.|+|.+|+||||||+.+++.......+. ...||.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 57899999999888777533 356789999999999999999998654444432 234555
No 33
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.17 E-value=0.00034 Score=58.73 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+..+|+|.|.+|+|||||++.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999985
No 34
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.14 E-value=0.00031 Score=53.55 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999886
No 35
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.14 E-value=0.00041 Score=58.31 Aligned_cols=26 Identities=35% Similarity=0.495 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+.-.+|+|+|.+|+|||||++.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999874
No 36
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00062 Score=66.01 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=43.3
Q ss_pred CCCcccccHHHHHHHHHHHhc----CCCCeEEEEEEcCCCCChhHHHHHHhhcccccccC
Q 038685 158 KKRNIVGLEDEMKELLDLLIV----GEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYF 213 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~----~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F 213 (265)
-+.+=+|.++.++.+++.|-. ..-+-.+++.||++|||||.|++.|-+ .....|
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 445678999999999999843 233457999999999999999999998 344444
No 37
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.11 E-value=0.0021 Score=64.23 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=59.6
Q ss_pred CCCcccccHHHHHHHHHHHhc---CCCCeEEEEEEcCCCCChhHHHHHHhhcccc---cccCC--eeEEEe--CCCCHHH
Q 038685 158 KKRNIVGLEDEMKELLDLLIV---GEPSLSVVAIVGSSGFDKTDFAGEAYNSNYM---KNYFY--CRAWVG--CEYYLHK 227 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~---~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v---~~~F~--~~~wV~--~~~~~~~ 227 (265)
.++.++|||++.++|...|.. +.....++-|+|++|.|||++++.|.+...- +..+. ..++|. .-.+...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 456799999999999998854 3333467889999999999999999875321 11222 245555 3356788
Q ss_pred HHHHHHHHhCCCC
Q 038685 228 VLDNIIKSVMPRS 240 (265)
Q Consensus 228 l~~~Il~~l~~~~ 240 (265)
+...|.++|....
T Consensus 833 IYqvI~qqL~g~~ 845 (1164)
T PTZ00112 833 AYQVLYKQLFNKK 845 (1164)
T ss_pred HHHHHHHHHcCCC
Confidence 8999999885543
No 38
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.11 E-value=0.00088 Score=57.22 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=24.0
Q ss_pred CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 180 EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 180 ~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.....+|+|.|..|.|||||++.+..-
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999988874
No 39
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.0013 Score=55.53 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++.-+|||.|.+|+||||+|+.+++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999984
No 40
>PRK08233 hypothetical protein; Provisional
Probab=97.10 E-value=0.00043 Score=56.41 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999875
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.10 E-value=0.00068 Score=59.10 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=33.8
Q ss_pred CcccccHHHHHHHHHHH---hc-------C---CCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 160 RNIVGLEDEMKELLDLL---IV-------G---EPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L---~~-------~---~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+++|.+..++.+.+.. .. + .+...-+-++|++|+||||+|+.+.+
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 36899888887775442 11 1 23456677999999999999999976
No 42
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.00054 Score=55.00 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
..-|.|.||+|+|||||++.|-+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4568999999999999999999853
No 43
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.05 E-value=0.00068 Score=61.98 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=38.8
Q ss_pred CCCcccccHHHHHHHHHHHhcC--C---------CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 158 KKRNIVGLEDEMKELLDLLIVG--E---------PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~~--~---------~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+++.|++..+++|.+.+... . ...+-+.++|++|+||||||+.+.+.
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999998877421 1 12455889999999999999999984
No 44
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.013 Score=57.09 Aligned_cols=48 Identities=25% Similarity=0.428 Sum_probs=41.8
Q ss_pred CCCcccccHHHHHHHHHHHhc----CCCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 158 KKRNIVGLEDEMKELLDLLIV----GEPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~----~~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-+.+=+|+++.++.++++|-. ++-+-++++.+|++|||||.+++.|-.
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH
Confidence 456789999999999999843 455678999999999999999999987
No 45
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.01 E-value=0.0013 Score=59.48 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhccc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNY 208 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~ 208 (265)
.+.-+-.||++|+||||||+.|-+..+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk 187 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSK 187 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcC
Confidence 466666999999999999999999533
No 46
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.00 E-value=0.0009 Score=60.06 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=37.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.|..++..+. ...+-++|++|+||||+|+.+.+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999988886543 445679999999999999998774
No 47
>PRK04195 replication factor C large subunit; Provisional
Probab=96.98 E-value=0.00085 Score=63.73 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=39.7
Q ss_pred CcccccHHHHHHHHHHHhcCC--CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGE--PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~--~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..+..|.+|+..-. ...+.+-|+|++|+||||+|+.+.++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999986421 22678889999999999999999885
No 48
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.97 E-value=0.0067 Score=48.26 Aligned_cols=108 Identities=12% Similarity=0.175 Sum_probs=83.9
Q ss_pred cchHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHHH
Q 038685 2 DINFRLFSERLRRLVEGEEGTLPDAAKEQFQNLYTEIEIVTSLLSNYENDMFQILFQSLGGEEEFDFSELQGILKEMKDF 81 (265)
Q Consensus 2 ~~~v~~~~~kl~~~l~~~e~~~~~~~~~~~~~L~~~l~~l~~~l~~ae~~~~~~~~~~~~~~~~~~~~~v~~Wl~~lr~~ 81 (265)
++|++.+++.|...+. ...+....++.-++.|.+.++.+...+.+.+. .. ...+ ..-+.=++++.+.
T Consensus 8 gaalG~~~~eLlk~v~-~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~---------~~--~eld-~~~~ee~e~L~~~ 74 (147)
T PF05659_consen 8 GAALGAVFGELLKAVI-DASKKSLSFKSILKRLESTLESIIPIIKEIDK---------LN--VELD-RPRQEEIERLKEL 74 (147)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHH---------Hh--hhcC-CchhHHHHHHHHH
Confidence 4677788888888888 77788888999999999999999999999998 42 3333 3336678899999
Q ss_pred HHhhHHHHHHHHHhhhhhccCCCccccchhhhhhHHHHHHHHHHHHHhHhh
Q 038685 82 VHESEKVIYIFMISRITQQISGSSSKDLFDALLGLQSQIIDIKQQLQQFRP 132 (265)
Q Consensus 82 ~~~~eDild~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~l~~l~~ 132 (265)
..++++++..|.. +++++++..++..++|+++.+.+.....
T Consensus 75 L~~g~~LV~k~sk----------~~r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 75 LEKGKELVEKCSK----------VRRWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHHHhcc----------ccHHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 9999999998832 1123455567788899888888877654
No 49
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.92 E-value=0.00097 Score=67.34 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=37.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++||+.+.+.+++.|..... .++ -++|.+|+|||++|+.+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~-~n~-lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK-NNP-ILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc-CCe-EEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999976532 233 49999999999999998774
No 50
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.92 E-value=0.0019 Score=54.59 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 165 LEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 165 ~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-+.....+..++.. .....|-|+|..|+||||||+.+++.
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45566666666543 23567889999999999999999985
No 51
>PRK06762 hypothetical protein; Provisional
Probab=96.91 E-value=0.00077 Score=54.33 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|+|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 52
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.89 E-value=0.0029 Score=52.99 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=37.6
Q ss_pred CCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-CCCCHHHHHH
Q 038685 179 GEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-CEYYLHKVLD 230 (265)
Q Consensus 179 ~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-~~~~~~~l~~ 230 (265)
+=+.-.++-|+|.+|+|||+|+..+..+ .......++|++ ..++...+.+
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~~~~~rl~~ 58 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEGLSPERFKQ 58 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCCHHHHHH
Confidence 3355789999999999999999998774 223457889999 5566665544
No 53
>PTZ00301 uridine kinase; Provisional
Probab=96.89 E-value=0.00085 Score=56.70 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
..+|||.|.+|+||||||+.|.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998865
No 54
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.88 E-value=0.001 Score=54.20 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
...+|.++|+.|+||||+|+.+++. ....|...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 4569999999999999999999984 444555555553
No 55
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.87 E-value=0.0015 Score=58.36 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=39.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+...+.+..++..+. -..++-++|.+|+||||||+.+++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 689999999999999987543 3567778999999999999999884
No 56
>PRK06547 hypothetical protein; Provisional
Probab=96.87 E-value=0.0016 Score=53.22 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
....+|+|.|..|+||||||+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999999875
No 57
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.87 E-value=0.00081 Score=46.28 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|+|.|..|+||||+++.+-+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999885
No 58
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.86 E-value=0.00068 Score=56.41 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|+|.|..|+|||||++.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999774
No 59
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0012 Score=57.58 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=39.8
Q ss_pred CcccccHHHHHHHHHHHhcC---CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG---EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~---~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|-+.-+++|-=.+... ...+--+-++|++|.||||||..|-+.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 68999999888887777542 356888999999999999999999995
No 60
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.85 E-value=0.00089 Score=52.27 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
||-++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999864
No 61
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0012 Score=60.16 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCC
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFY 214 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~ 214 (265)
+.-.=.||++|+||||||+.|-.. ...+|.
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~--~~~~f~ 77 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGT--TNAAFE 77 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHh--hCCceE
Confidence 444458999999999999999883 444554
No 62
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.84 E-value=0.0015 Score=58.02 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=38.2
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|.+..++.+..++..+. ...+-++|.+|+||||+++.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999886543 445789999999999999999885
No 63
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.83 E-value=0.0013 Score=66.44 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=37.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|++.+...++..|.... ..-+-++|.+|+||||||+.+...
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHH
Confidence 689999999999999887654 223349999999999999999875
No 64
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.81 E-value=0.0015 Score=60.36 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=38.6
Q ss_pred CCCcccccHHHHHHHHHHHhcC-----------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 158 KKRNIVGLEDEMKELLDLLIVG-----------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~~-----------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+++.|++..+++|.+.+... -...+-|-++|++|+|||+||+.+.+.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 3357899999999998876321 123556889999999999999999984
No 65
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.81 E-value=0.00099 Score=54.56 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+..+|.|+|++|+||||+++.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999999853
No 66
>PRK04040 adenylate kinase; Provisional
Probab=96.80 E-value=0.001 Score=55.15 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|+|++|+||||+++.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 67
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.79 E-value=0.0016 Score=64.69 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=33.1
Q ss_pred CcccccHHHHH---HHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMK---ELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~---~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+.... .|...+..+ .+.-+-++|++|+||||||+.+.+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 56888777664 344444433 3555679999999999999999984
No 68
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.78 E-value=0.001 Score=50.47 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+.|+|.+|+||||+++.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 57889999999999999999985
No 69
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.74 E-value=0.0009 Score=56.94 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|||.|..|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 70
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.74 E-value=0.0018 Score=64.58 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=52.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc---cccccC-CeeEEEe--------CCC--CH
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN---YMKNYF-YCRAWVG--------CEY--YL 225 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~---~v~~~F-~~~~wV~--------~~~--~~ 225 (265)
++++||+.+...+++.|.... ..+ +-++|.+|+|||+||+.+.... .+-..+ ++++|.. ..+ ..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~-~~n-~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~ 259 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK-KNN-PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF 259 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC-CCc-eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchH
Confidence 579999999999999887653 223 3589999999999999998853 122222 5666653 111 23
Q ss_pred HHHHHHHHHHhCC
Q 038685 226 HKVLDNIIKSVMP 238 (265)
Q Consensus 226 ~~l~~~Il~~l~~ 238 (265)
+.-++.+++.+..
T Consensus 260 e~~l~~i~~~~~~ 272 (731)
T TIGR02639 260 EERLKAVVSEIEK 272 (731)
T ss_pred HHHHHHHHHHHhc
Confidence 4566677766543
No 71
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.73 E-value=0.0012 Score=50.51 Aligned_cols=47 Identities=13% Similarity=0.022 Sum_probs=30.9
Q ss_pred EEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe----C-C--CCHHHHHHHHHHHhC
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG----C-E--YYLHKVLDNIIKSVM 237 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~----~-~--~~~~~l~~~Il~~l~ 237 (265)
|-|+|.+|+||||||+.+.++- .. ..+.+. . . .....-+..++++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~---~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~ 54 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GF---PFIEIDGSELISSYAGDSEQKIRDFFKKAK 54 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TS---EEEEEETTHHHTSSTTHHHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc--cc---cccccccccccccccccccccccccccccc
Confidence 5689999999999999999963 21 124444 1 1 234555666666653
No 72
>PRK03839 putative kinase; Provisional
Probab=96.72 E-value=0.0012 Score=54.03 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999885
No 73
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.72 E-value=0.0019 Score=65.50 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=37.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++||+.+...+++.|.... -.-+-++|.+|+||||||+.+-..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999997654 223348999999999999998875
No 74
>PF13173 AAA_14: AAA domain
Probab=96.71 E-value=0.0013 Score=50.81 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=27.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
-+++.|.|+.|+|||||++.++.+.. .....++++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~ 36 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYIN 36 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeec
Confidence 46889999999999999999998533 335566776
No 75
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.70 E-value=0.0079 Score=48.97 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=44.1
Q ss_pred ccccHHHHHHHHHHHhcCC-CCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-CCCCHHHHHHHHHHH
Q 038685 162 IVGLEDEMKELLDLLIVGE-PSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-CEYYLHKVLDNIIKS 235 (265)
Q Consensus 162 ~vG~e~~~~~l~~~L~~~~-~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-~~~~~~~l~~~Il~~ 235 (265)
++|....+.++++.+..-. ....| -|+|..|+||+.+|+.|++. ....-...+-|+ ..++.+.+-..++-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pV-lI~GE~GtGK~~lA~~IH~~--s~r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPV-LITGETGTGKELLARAIHNN--SPRKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-E-EEECSTTSSHHHHHHHHHHC--STTTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCE-EEEcCCCCcHHHHHHHHHHh--hhcccCCeEEEehhhhhcchhhhhhhcc
Confidence 4788888888888876432 23444 49999999999999999993 222223334444 666666555555543
No 76
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.0021 Score=61.35 Aligned_cols=49 Identities=24% Similarity=0.165 Sum_probs=39.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYM 209 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v 209 (265)
++++|-+..++.|..++..+. -...+-++|++|+||||+|+.+.+....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 578999888888888876543 3456789999999999999999886443
No 77
>PLN03025 replication factor C subunit; Provisional
Probab=96.68 E-value=0.0023 Score=57.49 Aligned_cols=45 Identities=24% Similarity=0.283 Sum_probs=35.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|-++.+..|..++..+. ..-+-++|++|+||||+|+.+.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 578898888888877765443 334568999999999999998874
No 78
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.67 E-value=0.0012 Score=54.85 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 79
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.62 E-value=0.0053 Score=53.44 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=41.9
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEE-------e--CCCCHHHH--HHHHHHHhCCCCCCC
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWV-------G--CEYYLHKV--LDNIIKSVMPRSMGS 243 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV-------~--~~~~~~~l--~~~Il~~l~~~~~~~ 243 (265)
.+...|-++||+|+||||.+|.++.+..-++.=..++=. . .+.++.+. .+.++++-+.+.++.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGg 90 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGG 90 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcc
Confidence 456788899999999999999999974433221112211 1 44555554 567888888776654
No 80
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.62 E-value=0.006 Score=59.57 Aligned_cols=74 Identities=11% Similarity=0.054 Sum_probs=54.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccc-cCCeeEEEe-CCCCHHHHHHHHHHHhC
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKN-YFYCRAWVG-CEYYLHKVLDNIIKSVM 237 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~-~F~~~~wV~-~~~~~~~l~~~Il~~l~ 237 (265)
++++|.++.+..+...+..+. .++ ++|++|+|||||++.+.+. +-. .|...+++. ...+..++++.+..+++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~---~~l-l~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR---NVL-LIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPNPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC---CEE-EECCCCCCHHHHHHHHHHH--cCchhheeEEEEeCCCCCchHHHHHHHHhhc
Confidence 578898888777766665432 444 8999999999999999984 333 455566666 66677888988888887
Q ss_pred CC
Q 038685 238 PR 239 (265)
Q Consensus 238 ~~ 239 (265)
.+
T Consensus 92 ~~ 93 (608)
T TIGR00764 92 RE 93 (608)
T ss_pred hH
Confidence 53
No 81
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.61 E-value=0.006 Score=51.91 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=36.9
Q ss_pred CCCCeEEEEEEcCCCCChhHHHHHHhhccccccc----CCeeEEEe--CCCCHHHHHH
Q 038685 179 GEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNY----FYCRAWVG--CEYYLHKVLD 230 (265)
Q Consensus 179 ~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~----F~~~~wV~--~~~~~~~l~~ 230 (265)
+=+.-.++.|+|.+|+|||||+..+.-....... ...++|++ ..++..++.+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 3355789999999999999999999753222221 36789999 5566655443
No 82
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.61 E-value=0.0014 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
||.|+|.+|+||||+|+.+-..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 83
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.003 Score=50.79 Aligned_cols=43 Identities=21% Similarity=0.158 Sum_probs=33.5
Q ss_pred EEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEeCCCCHHHHHHHHHHHhCC
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVGCEYYLHKVLDNIIKSVMP 238 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~~~~~~~~l~~~Il~~l~~ 238 (265)
+|.|-|.+|+||||+|+.+-++--.+ -.+.-.++++|+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-----------~vsaG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-----------LVSAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-----------eeeccHHHHHHHHHcCC
Confidence 78999999999999999999863322 24556778888877765
No 84
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.60 E-value=0.0014 Score=53.88 Aligned_cols=22 Identities=50% Similarity=0.616 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|+|.|..|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 85
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.60 E-value=0.0018 Score=48.81 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhHHHHHHhhcccc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSNYM 209 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~~v 209 (265)
|.|+|..|+|||||.+.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 689999999999999999986543
No 86
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.56 E-value=0.0019 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 87
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.011 Score=52.94 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=55.6
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc----cccccCCeeEEEe---CCCCHHHHHHHH
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN----YMKNYFYCRAWVG---CEYYLHKVLDNI 232 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~----~v~~~F~~~~wV~---~~~~~~~l~~~I 232 (265)
.+++|-+..++.+..++..+. -...+-++|+.|+||||||+.+...- ....|+|...|.. +......| +++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHH
Confidence 478899888999999886543 34567899999999999999888742 2346788877765 55566664 445
Q ss_pred HHHhCC
Q 038685 233 IKSVMP 238 (265)
Q Consensus 233 l~~l~~ 238 (265)
.+.+..
T Consensus 82 ~~~~~~ 87 (313)
T PRK05564 82 IEEVNK 87 (313)
T ss_pred HHHHhc
Confidence 565543
No 88
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.56 E-value=0.0018 Score=52.77 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++|.|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999983
No 89
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.55 E-value=0.0021 Score=54.03 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=26.2
Q ss_pred HHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 175 LLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 175 ~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
|+.......+.|.|+|++|+|||||++.+.+.
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 44445557889999999999999999999764
No 90
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.55 E-value=0.002 Score=50.86 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=25.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
++|+|+|..|+|||||++.+.+.. .+..+...+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEE
Confidence 489999999999999999999963 223445454555
No 91
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.54 E-value=0.002 Score=52.67 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999974
No 92
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.54 E-value=0.0043 Score=52.70 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
....+-|+|..|+|||+||+.+++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999985
No 93
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.53 E-value=0.0021 Score=56.97 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+...+|||.|..|+||||||+.+-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987754
No 94
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.52 E-value=0.0031 Score=55.26 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=37.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe----CCCCHHHHHHHHHHH
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG----CEYYLHKVLDNIIKS 235 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~----~~~~~~~l~~~Il~~ 235 (265)
-.-++|.|..|+|||||++.+++. ++.+|...+++. +.....++.+.+.+.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~ 123 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKES 123 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhc
Confidence 467899999999999999999995 555565444444 445567777777653
No 95
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.002 Score=53.99 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhccc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNY 208 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~ 208 (265)
..+|+|-||-|+||||||+.+-++-.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 57899999999999999999988643
No 96
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.51 E-value=0.005 Score=48.15 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 168 EMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 168 ~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
+..++-..|...=..-.+|.+.|.-|+|||||++.+....
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444443321234689999999999999999999854
No 97
>CHL00181 cbbX CbbX; Provisional
Probab=96.49 E-value=0.0045 Score=54.80 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=33.2
Q ss_pred CcccccHHHHHHHHHHH---hc-------C---CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLL---IV-------G---EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L---~~-------~---~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|.+..+++|.++. .. + ......|-++|.+|+||||+|+.+...
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899888888665543 11 1 112334778999999999999999663
No 98
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.49 E-value=0.0038 Score=54.19 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.-.+++|+|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999998
No 99
>PRK05439 pantothenate kinase; Provisional
Probab=96.49 E-value=0.0046 Score=55.29 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
...-+|||.|.+|+||||||+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999877
No 100
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.48 E-value=0.028 Score=56.54 Aligned_cols=47 Identities=23% Similarity=0.427 Sum_probs=38.3
Q ss_pred CcccccHHHHHHHHHHHhc----CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV----GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~----~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|.+..++.+.+++.. +.....++.++|++|+||||||+.+.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999887642 2333458999999999999999999985
No 101
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.0048 Score=56.48 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=38.2
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|-+..++.+.+.+..+. -...+-++|+.|+||||||+.+.+.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHH
Confidence 589999999999888886543 3456789999999999999999874
No 102
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.004 Score=58.90 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=36.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+.....|...+..+. -...+-++|++|+||||+|+.+.+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999888777777765543 2355779999999999999999774
No 103
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.47 E-value=0.002 Score=52.27 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 038685 185 VVAIVGSSGFDKTDFAGEAY 204 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy 204 (265)
.|+|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 104
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.46 E-value=0.0043 Score=60.05 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=37.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|.+..+..|.+.+..+. -...+-++|+.|+||||+|+.+-+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 589999999999988886543 2356779999999999999998764
No 105
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.46 E-value=0.0025 Score=51.35 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|.++|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458899999999999999999885
No 106
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.45 E-value=0.0036 Score=63.54 Aligned_cols=45 Identities=16% Similarity=0.339 Sum_probs=37.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++||+.+...++..|..... .-+-++|.+|+|||+||+.+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHHH
Confidence 5799999999999999976542 22337999999999999998775
No 107
>PRK00625 shikimate kinase; Provisional
Probab=96.45 E-value=0.0021 Score=52.58 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|-++||+|+||||+++.+-+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999764
No 108
>PHA00729 NTP-binding motif containing protein
Probab=96.45 E-value=0.0047 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|.|.|.+|+||||||..|-+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 557889999999999999999874
No 109
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.44 E-value=0.002 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999774
No 110
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.43 E-value=0.003 Score=51.41 Aligned_cols=25 Identities=28% Similarity=0.162 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-.+|.|+|.+|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999999875
No 111
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.43 E-value=0.0024 Score=53.25 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+|+|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999875
No 112
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.41 E-value=0.0043 Score=59.75 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=27.4
Q ss_pred HHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 173 LDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 173 ~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+.|....+...+|+|.|..|+||||||+.|...
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 3344445556899999999999999999999874
No 113
>PRK06217 hypothetical protein; Validated
Probab=96.40 E-value=0.0024 Score=52.50 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=26.2
Q ss_pred EEEEEcCCCCChhHHHHHHhhcccccccC--CeeEEEe
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNSNYMKNYF--YCRAWVG 220 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~~~v~~~F--~~~~wV~ 220 (265)
.|.|.|++|+||||||+.+....... +| |..+|-.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~~ 39 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWLP 39 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeecc
Confidence 48999999999999999999864332 33 4455544
No 114
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.38 E-value=0.0022 Score=48.06 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhHHHHHHhh
Q 038685 186 VAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~ 205 (265)
|-|+|.+|+|||+||+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999664
No 115
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.36 E-value=0.012 Score=48.78 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
+....|+|+|.+|+|||||.+.+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 346788999999999999999998863
No 116
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.35 E-value=0.0035 Score=52.24 Aligned_cols=26 Identities=27% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
....+|.|+|++|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 117
>PRK13695 putative NTPase; Provisional
Probab=96.34 E-value=0.0038 Score=50.83 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 118
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.32 E-value=0.0032 Score=48.80 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|+|..|+|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 58899999999999999999884
No 119
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.31 E-value=0.0086 Score=50.01 Aligned_cols=55 Identities=20% Similarity=0.150 Sum_probs=37.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-CCCCH--HHHHHHHHHHhCCC
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-CEYYL--HKVLDNIIKSVMPR 239 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-~~~~~--~~l~~~Il~~l~~~ 239 (265)
++||.+||+.|+||||.+-++......+ =..+..++ -+|.. .+=++...+.++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 4799999999999999888887754333 34466666 55543 44566677777643
No 120
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.31 E-value=0.0086 Score=58.60 Aligned_cols=74 Identities=14% Similarity=0.020 Sum_probs=57.2
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-CCCCHHHHHHHHHHHhCC
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-CEYYLHKVLDNIIKSVMP 238 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-~~~~~~~l~~~Il~~l~~ 238 (265)
++++|.++.++.|...+... ..+-++|.+|+||||||+.+.+.- -..+|+..+|.. ...+...+++.+..+++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNPEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCCCcchHHHHHHHHHhcCH
Confidence 56889888888777766543 257789999999999999998752 223568888988 777888888888876664
No 121
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.31 E-value=0.013 Score=49.61 Aligned_cols=49 Identities=12% Similarity=0.019 Sum_probs=36.3
Q ss_pred cCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-CCCCHHHH
Q 038685 178 VGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-CEYYLHKV 228 (265)
Q Consensus 178 ~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-~~~~~~~l 228 (265)
.+=+.-.++-|+|.+|+|||||+..+.... ...-..++||+ ..++...+
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e~~~~~r~ 67 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTEGLSPERF 67 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECCCCCHHHH
Confidence 333557899999999999999999998743 23346788998 75555444
No 122
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.0064 Score=59.34 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=38.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+.....|.+++..+. -...+-++|+.|+||||+|+.+-+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999987653 2467789999999999999988664
No 123
>PRK13975 thymidylate kinase; Provisional
Probab=96.29 E-value=0.0035 Score=51.84 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.+|.|.|+.|+||||+++.+.+.-
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999853
No 124
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.29 E-value=0.0028 Score=50.06 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|.++|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4679999999999999999885
No 125
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.28 E-value=0.0037 Score=49.43 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhhcc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
-|+++|.+|+|||||++.+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 126
>PRK13949 shikimate kinase; Provisional
Probab=96.28 E-value=0.0031 Score=51.32 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|.|+|++|+|||||++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998874
No 127
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.28 E-value=0.0034 Score=51.76 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47889999999999999999774
No 128
>PRK06893 DNA replication initiation factor; Validated
Probab=96.27 E-value=0.0039 Score=53.28 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+-+||.+|+|||+|++.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999985
No 129
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.26 E-value=0.038 Score=55.58 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=40.4
Q ss_pred CCCcccccHHHHHHHHHHHhc----CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 158 KKRNIVGLEDEMKELLDLLIV----GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~----~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-+.+.+|.+..++.++.+|.. +.....++.++|++|+||||+++.+...
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 446799999999999998853 2234568999999999999999999973
No 130
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.26 E-value=0.0032 Score=49.73 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|.|+|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 131
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.24 E-value=0.0051 Score=50.52 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=29.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
.++|-|+|+.|+|||||++.+... ...+|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--cccccccceeec
Confidence 467889999999999999999983 556787667776
No 132
>PRK13947 shikimate kinase; Provisional
Probab=96.24 E-value=0.0033 Score=50.81 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|.|+|++|+||||+++.+-+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 133
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0067 Score=49.92 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=26.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
-.++.|.|+.|+||+||++.++++. .|...+-.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~----~l~~SVS~T 37 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD----KLRFSVSAT 37 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc----CeEEEEEec
Confidence 4678899999999999999999974 454444444
No 134
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.23 E-value=0.0057 Score=52.63 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=30.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
.-.++|+|..|+|||||+..+..+ ....|.+..+++
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t 48 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLIT 48 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEe
Confidence 346789999999999999999984 777888777776
No 135
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.23 E-value=0.0032 Score=52.75 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.-|.|+|.+|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 467899999999999999999864
No 136
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.22 E-value=0.0042 Score=52.12 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+.+|+++|..|+|||||.+.+...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999999874
No 137
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.22 E-value=0.018 Score=58.59 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=48.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe---CCCCHHHHHHHHHHHh
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG---CEYYLHKVLDNIIKSV 236 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~---~~~~~~~l~~~Il~~l 236 (265)
..++-|. .|...|... ...+++-|.|++|.|||||+.....+ |..++|++ ..-++..+...++..+
T Consensus 14 ~~~~~R~----rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRE----RLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcch----HHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 4555554 555555432 35789999999999999999997752 34799999 3345667777777777
Q ss_pred C
Q 038685 237 M 237 (265)
Q Consensus 237 ~ 237 (265)
.
T Consensus 83 ~ 83 (903)
T PRK04841 83 Q 83 (903)
T ss_pred H
Confidence 4
No 138
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.019 Score=57.91 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=38.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.+++|-+.-+..|.+++..+. -...+-++|..|+||||+|+.+.+.-
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999988886543 23445799999999999999999854
No 139
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.21 E-value=0.007 Score=56.08 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=37.2
Q ss_pred CcccccHHHHHHHHHHHhc----C-------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV----G-------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~----~-------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.++.|.+..+++|.+.+.- . -...+-|-++|++|+|||+||+.+.+.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 5788999999988876631 1 123567889999999999999999985
No 140
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.21 E-value=0.0081 Score=54.24 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 169 MKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 169 ~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+++.+.....+..+|+|.|.+|+|||||+..+...
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34566655443456889999999999999999987664
No 141
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.19 E-value=0.0043 Score=50.12 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|+.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 689999999999999999887763
No 142
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.18 E-value=0.004 Score=50.78 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++|-+.|++|+||||+|+.+.+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 143
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.18 E-value=0.0036 Score=49.13 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999984
No 144
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.17 E-value=0.006 Score=60.92 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=42.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc---ccccc-CCeeEEEe
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN---YMKNY-FYCRAWVG 220 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~---~v~~~-F~~~~wV~ 220 (265)
+.++||+.+...+++.|.... ...+ -++|.+|+|||+||+.+.... .+-.. .++.+|-.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~-~~n~-LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR-KNNP-LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC-CCCe-EEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 579999999999999887643 2233 479999999999999998742 11111 35666653
No 145
>PRK14530 adenylate kinase; Provisional
Probab=96.16 E-value=0.004 Score=52.57 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|.|+|++|+||||+++.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999763
No 146
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.15 E-value=0.025 Score=50.47 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCC-CCeEEEEEEcCCCCChhHHHHHHhhccccc--ccC---CeeEEEe-C-CCCHHHHHHHHHHHhC
Q 038685 166 EDEMKELLDLLIVGE-PSLSVVAIVGSSGFDKTDFAGEAYNSNYMK--NYF---YCRAWVG-C-EYYLHKVLDNIIKSVM 237 (265)
Q Consensus 166 e~~~~~l~~~L~~~~-~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~--~~F---~~~~wV~-~-~~~~~~l~~~Il~~l~ 237 (265)
+...+.|.+.|...+ ....+|||.|.=|+||||+.+.+.+.-+-. ..+ ..-+|-+ . .--...++..|..++.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 445667777777653 678999999999999999999999854333 111 3344444 2 2234677777777776
Q ss_pred CC
Q 038685 238 PR 239 (265)
Q Consensus 238 ~~ 239 (265)
..
T Consensus 82 ~~ 83 (325)
T PF07693_consen 82 KH 83 (325)
T ss_pred Hh
Confidence 54
No 147
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.15 E-value=0.0044 Score=46.69 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|+|+|+.|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999984
No 148
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.14 E-value=0.0038 Score=50.13 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
||+|+|+.|+|||||+..+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 149
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.13 E-value=0.017 Score=53.58 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=37.4
Q ss_pred CcccccHHHHHHHHHHHhcC------------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG------------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~------------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..++|.+..+..+..++... +....-|-++|++|+||||||+.+-..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999998877531 112467889999999999999999874
No 150
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.13 E-value=0.009 Score=51.76 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 168 EMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 168 ~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...++++.|.....+..+|||.|.||+||+||.-.+-..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 456777777665556889999999999999999887764
No 151
>PRK08727 hypothetical protein; Validated
Probab=96.10 E-value=0.013 Score=50.26 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=26.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
...+.|+|..|+|||+|++.+++. ...+....++++
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 355899999999999999999885 233333455555
No 152
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.10 E-value=0.0035 Score=50.30 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|.|+|++|+||||+|+.+-..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998875
No 153
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.10 E-value=0.022 Score=56.45 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=37.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+-+.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999986553 2344459999999999999877664
No 154
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.10 E-value=0.0045 Score=48.25 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=18.7
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|-++|.+|+|||+||+.+..-
T Consensus 2 vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998873
No 155
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.0046 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-..|+|+|..|+|||||.+.|--
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 156
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.08 E-value=0.016 Score=50.30 Aligned_cols=54 Identities=30% Similarity=0.166 Sum_probs=40.6
Q ss_pred cCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEeCCCCHHHHHHHHH
Q 038685 178 VGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVGCEYYLHKVLDNII 233 (265)
Q Consensus 178 ~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~~~~~~~~l~~~Il 233 (265)
.+=+.-+++.|+|.+|+|||+++.+.-.. ...++..++||+-.-+..++.+...
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~~~~l~~~~~ 71 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEESPEELLENAR 71 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCCHHHHHHHHH
Confidence 33356899999999999999999888773 4555899999994444555555553
No 157
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.06 E-value=0.017 Score=51.11 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+..+|.|+|.+|+|||||+..+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999884
No 158
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.05 E-value=0.0059 Score=45.89 Aligned_cols=22 Identities=41% Similarity=0.409 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAY 204 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy 204 (265)
-..++|+|..|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3678999999999999999976
No 159
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.05 E-value=0.0048 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHHHHhhcc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|.|.|.+|+|||||++.+.+.-
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999999853
No 160
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.05 E-value=0.0043 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
||.|+|.+|+||||||+.+-..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998874
No 161
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.05 E-value=0.0042 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+.|+|+|-|||||||++..+---
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~ 23 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAA 23 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHH
Confidence 46999999999999988777653
No 162
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.04 E-value=0.0063 Score=47.91 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=25.2
Q ss_pred EEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
++.|+|.+|+|||||++.+.... ...-.+++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEE
Confidence 46899999999999999998743 22334556665
No 163
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.04 E-value=0.049 Score=51.10 Aligned_cols=55 Identities=16% Similarity=0.077 Sum_probs=37.2
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-CCCCH--HHHHHHHHHHhCC
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-CEYYL--HKVLDNIIKSVMP 238 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-~~~~~--~~l~~~Il~~l~~ 238 (265)
...+|.++|.+|+||||++..+.....- ..+ .++-|+ -.+.. .+-++.+.++++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 4789999999999999999999874332 222 344455 44443 4556666666654
No 164
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.0095 Score=57.28 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=37.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|-+..+..|...+..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~ 61 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKC 61 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999988886543 2345678999999999999999873
No 165
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.04 E-value=0.021 Score=48.29 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=34.8
Q ss_pred cCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccC------CeeEEEe--CCCCHHHHH
Q 038685 178 VGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYF------YCRAWVG--CEYYLHKVL 229 (265)
Q Consensus 178 ~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F------~~~~wV~--~~~~~~~l~ 229 (265)
.+=+.-.++.|+|.+|+|||+|+..+.-... ..- ..++|+. ..++...+.
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHH
Confidence 3435578999999999999999999876421 222 4567888 556655443
No 166
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.04 E-value=0.0042 Score=53.49 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=18.5
Q ss_pred EEcCCCCChhHHHHHHhhcccc
Q 038685 188 IVGSSGFDKTDFAGEAYNSNYM 209 (265)
Q Consensus 188 IvG~gGvGKTTLa~~vy~~~~v 209 (265)
|+|++|+||||+++.+.+.-..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999996443
No 167
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.04 E-value=0.008 Score=53.54 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 170 KELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 170 ~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+++-+........+|+|+|.+|+|||||+..+...
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444333356899999999999999999998774
No 168
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.005 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.++||+|..|+|||||++.+--
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 46889999999999999999865
No 169
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.03 E-value=0.0064 Score=47.71 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|+++|..|+|||||++.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998765
No 170
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.02 E-value=0.0051 Score=49.16 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|+|+|.+|+|||||++.+.++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998765
No 171
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.01 E-value=0.0062 Score=48.40 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998764
No 172
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.01 E-value=0.012 Score=50.57 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+-|+|+.|+|||+|++.+++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457789999999999999999884
No 173
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.01 E-value=0.0095 Score=55.80 Aligned_cols=47 Identities=26% Similarity=0.306 Sum_probs=36.2
Q ss_pred CcccccHHHHHHHHHHHhc----C-------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV----G-------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~----~-------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.++.|.+..+++|.+.+.- . -....-+.++|.+|+|||+||+.|.+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4678899999888877631 1 123455779999999999999999995
No 174
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.01 E-value=0.0063 Score=47.44 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999886
No 175
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.01 E-value=0.0055 Score=51.38 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
..+|||+|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998766
No 176
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.00 E-value=0.0054 Score=51.65 Aligned_cols=24 Identities=33% Similarity=0.259 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 177
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.00 E-value=0.0055 Score=51.33 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 178
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.00 E-value=0.0056 Score=48.53 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHHhhcc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|.++|.+|+|||||++.+.+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999987753
No 179
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.99 E-value=0.016 Score=48.85 Aligned_cols=36 Identities=22% Similarity=0.090 Sum_probs=27.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
.-.|++|+|+.|+|||||.+-++.=+ ..=+-.|||.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE---~~~~G~I~i~ 62 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE---EPDSGSITVD 62 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc---CCCCceEEEC
Confidence 34689999999999999999998732 2224566665
No 180
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.99 E-value=0.0053 Score=49.31 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|+|+|.+|+|||||++.+.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 455899999999999999999985
No 181
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.98 E-value=0.004 Score=50.06 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.7
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999975
No 182
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.98 E-value=0.027 Score=52.29 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=36.4
Q ss_pred CcccccHHHHHHHHHHHhcC------------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG------------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~------------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..++|.++.+..+.-.+... ....+-|-++|++|+||||||+.+-..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899988888886665431 112467889999999999999999885
No 183
>PLN02796 D-glycerate 3-kinase
Probab=95.98 E-value=0.0064 Score=54.98 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-+|+|.|..|+|||||++.+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999999984
No 184
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.97 E-value=0.0055 Score=53.90 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++|+|+|.+|+|||||+..+...
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~ 24 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR 24 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999885
No 185
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.97 E-value=0.0085 Score=50.01 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|.|+|..|+||||+++.+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999987763
No 186
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.011 Score=54.89 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=37.3
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
++++|-+..++.|..++..+. -...+-++|+.|+||||+|+.+-+.-
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHh
Confidence 589999888888888886543 23457789999999999998877643
No 187
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.96 E-value=0.011 Score=52.17 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=30.6
Q ss_pred cccccHHHHHHHHHHHh---c-------C-C--CCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 161 NIVGLEDEMKELLDLLI---V-------G-E--PSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 161 ~~vG~e~~~~~l~~~L~---~-------~-~--~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.++|.++.+++|.++.. . + . ....-+-++|.+|+||||+|+.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 57888888887755431 1 1 0 1122467999999999999966655
No 188
>PLN02348 phosphoribulokinase
Probab=95.96 E-value=0.0099 Score=54.62 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 180 EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 180 ~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+..-+|||.|.+|+||||||+.|.+.
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999984
No 189
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.011 Score=55.82 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=37.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|-+.....|..++..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 579999988888888887654 2245779999999999999999874
No 190
>PRK09087 hypothetical protein; Validated
Probab=95.94 E-value=0.0061 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-+.+.|||..|+|||||++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999865
No 191
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.94 E-value=0.027 Score=50.54 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=42.1
Q ss_pred HHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccC----CeeEEEe--CCCCHHHHHHHHHHHhC
Q 038685 175 LLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYF----YCRAWVG--CEYYLHKVLDNIIKSVM 237 (265)
Q Consensus 175 ~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F----~~~~wV~--~~~~~~~l~~~Il~~l~ 237 (265)
+|-.+=+.-.++-|+|.+|+|||+|+.++.-.......+ ..++||+ .+|++..+.+ +++.++
T Consensus 94 ~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 94 LLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred HhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 333443567899999999999999999997643222111 4789998 6678777654 344443
No 192
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.94 E-value=0.0061 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 193
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.93 E-value=0.0062 Score=47.10 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhhcc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
-|+++|.+|+|||||+..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998865
No 194
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.93 E-value=0.0063 Score=49.97 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999885
No 195
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.93 E-value=0.031 Score=49.92 Aligned_cols=59 Identities=8% Similarity=0.118 Sum_probs=40.8
Q ss_pred cCCCCeEEEEEEcCCCCChhHHHHHHhhcccccc----cCCeeEEEe--CCCCHHHHHHHHHHHhC
Q 038685 178 VGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKN----YFYCRAWVG--CEYYLHKVLDNIIKSVM 237 (265)
Q Consensus 178 ~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~----~F~~~~wV~--~~~~~~~l~~~Il~~l~ 237 (265)
.+=+.-.++-|+|.+|+|||||+..+.-+..... .=..++||. .+|+..++.+ +++.++
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 3435578999999999999999999976533211 113789999 6688877653 444443
No 196
>PRK04182 cytidylate kinase; Provisional
Probab=95.93 E-value=0.0064 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|.|.|+.|+||||+++.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999874
No 197
>PRK14527 adenylate kinase; Provisional
Probab=95.93 E-value=0.0068 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|.|+|.+|+||||+|+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998754
No 198
>PRK10536 hypothetical protein; Provisional
Probab=95.93 E-value=0.018 Score=50.03 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=40.2
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEE
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAW 218 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~w 218 (265)
..+.++......++.+|.. ..+|.+.|.+|+|||+||..+.-+.-..+.|+..+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 4567788888888888865 248899999999999999998775322334544333
No 199
>PRK06620 hypothetical protein; Validated
Probab=95.93 E-value=0.0062 Score=51.59 Aligned_cols=24 Identities=25% Similarity=0.086 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
+.+-|||++|+|||+|++.+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 567899999999999999988754
No 200
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.93 E-value=0.0057 Score=50.31 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|-|.|.+|.||||+|+.+-+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999985
No 201
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.92 E-value=0.0071 Score=48.80 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|+|+|..|+|||||+..+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999984
No 202
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.92 E-value=0.0064 Score=50.14 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 203
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.91 E-value=0.0096 Score=56.77 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=37.4
Q ss_pred CcccccHHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 160 RNIVGLEDEMKELLDLLIV-----------GEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~-----------~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.++.|.+..++++.+.+.- +-...+-|-++|++|+|||++|+.+++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 5688899999998887632 11234557899999999999999999953
No 204
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.91 E-value=0.0063 Score=49.64 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|.|+|+.|+|||||++.+-+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999999874
No 205
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.91 E-value=0.013 Score=48.39 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 167 DEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 167 ~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+...++.+.... -..+.|+|..|+|||||++.+..
T Consensus 12 ~~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 12 PLQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh
Confidence 4445555554443 46789999999999999998876
No 206
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.90 E-value=0.011 Score=53.51 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=35.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
..+||-+..+..|+-.+.+. ...-+.|.|..|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~--~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP--KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 57899999888887766653 355677999999999999999964
No 207
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.90 E-value=0.0068 Score=53.55 Aligned_cols=43 Identities=21% Similarity=0.158 Sum_probs=29.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-CCCC
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-CEYY 224 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-~~~~ 224 (265)
...+|+++|.+|+||||++..+......+..-..++.|+ .++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 467999999999999999999887532221112445566 4443
No 208
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.90 E-value=0.0066 Score=48.81 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|.|.|..|+||||+|+.+-+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999763
No 209
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.89 E-value=0.0066 Score=49.82 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999963
No 210
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.89 E-value=0.0086 Score=48.14 Aligned_cols=36 Identities=19% Similarity=0.003 Sum_probs=25.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
..||=+.|.+|+||||||+.+... ....-....++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468899999999999999999984 333334444443
No 211
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.007 Score=50.89 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.. .+++|+|..|.|||||++.+..-
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 35 89999999999999999999874
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.89 E-value=0.011 Score=54.51 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..++|+++|.+|+||||++..+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999999763
No 213
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.89 E-value=0.0089 Score=54.34 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=37.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+.+||-++.+..|+..+.+. .+.-|-|.|..|+||||+|+.+++-
T Consensus 17 ~~ivGq~~~k~al~~~~~~p--~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDP--KIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred HHHhChHHHHHHHHHhccCC--CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 68999998888887766654 4555669999999999999999773
No 214
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.0069 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 215
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.88 E-value=0.0077 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999885
No 216
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.87 E-value=0.0069 Score=47.15 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEcCCCCChhHHHHHHhhcc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|.++|.+|+|||||++.+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 6899999999999999998764
No 217
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.86 E-value=0.012 Score=50.08 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhHHHHHHhh
Q 038685 185 VVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.|+|+|-||+||||+|-.+-.
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 689999999999999988444
No 218
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.86 E-value=0.006 Score=53.39 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
++|+|+|-|||||||++-.+--
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999998887755
No 219
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.86 E-value=0.0063 Score=49.17 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+|++|+|+-|+|||||...+-.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 57999999999999999999955
No 220
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.85 E-value=0.0069 Score=47.90 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEcCCCCChhHHHHHHhhcc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|.|+|.+|+|||||++.+.+..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998753
No 221
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.84 E-value=0.0062 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
++|+|.|-||+||||++-.+-.
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999997776654
No 222
>PRK08356 hypothetical protein; Provisional
Probab=95.84 E-value=0.0076 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAY 204 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy 204 (265)
..+|.|+|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999993
No 223
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.007 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 224
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.83 E-value=0.0061 Score=49.98 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhh
Q 038685 185 VVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+|+|.|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 225
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.83 E-value=0.013 Score=51.47 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...++|.++|.+|+||||++.++...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34789999999999999988888763
No 226
>PRK06761 hypothetical protein; Provisional
Probab=95.83 E-value=0.014 Score=51.57 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEE
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWV 219 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV 219 (265)
.+|.|.|++|+|||||++.+.+... ...+++..+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~-~~g~~v~~~~ 38 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS-QNGIEVELYL 38 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC-cCceEEEEEe
Confidence 5799999999999999999998643 2234444433
No 227
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.83 E-value=0.0081 Score=47.15 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|.|+|.+|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998754
No 228
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.83 E-value=0.0074 Score=49.48 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.++.|+|..|+|||||++.+...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999984
No 229
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.0071 Score=50.65 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 230
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.82 E-value=0.0073 Score=47.86 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhHHHHHHhhcc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|.|+|.+|+|||||++.+.+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999987643
No 231
>PRK05642 DNA replication initiation factor; Validated
Probab=95.82 E-value=0.021 Score=49.03 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=26.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
...+-|+|..|+|||+|++.+.+.. ...-..+++++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~ 80 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLP 80 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEee
Confidence 3678899999999999999998742 21123445665
No 232
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.81 E-value=0.0074 Score=50.91 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999974
No 233
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.81 E-value=0.0073 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 234
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.0074 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 235
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.80 E-value=0.0085 Score=47.15 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHHHHhhcc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|.|+|.+|+|||||++.+.++.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999987653
No 236
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.79 E-value=0.0077 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 237
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.79 E-value=0.0069 Score=53.20 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
++|+|+|-|||||||++-.+-.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999998877655
No 238
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.78 E-value=0.0091 Score=49.42 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|.|+|+.|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999875
No 239
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=95.78 E-value=0.0069 Score=47.72 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=18.6
Q ss_pred EEEEcCCCCChhHHHHHHhh
Q 038685 186 VAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~ 205 (265)
|+++|..|+|||||.+.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999993
No 240
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.0079 Score=50.50 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 241
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.0077 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 242
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.77 E-value=0.0076 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999874
No 243
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.76 E-value=0.0081 Score=51.16 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|+.|+|||||...+.-
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 244
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.76 E-value=0.0073 Score=43.14 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|.+.|.+|+||||++..+...
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 245
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.76 E-value=0.015 Score=54.96 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=35.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..++|+++..+.+...++.+. -|-+.|.+|+||||||+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 468999999999888876543 3458999999999999999984
No 246
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.76 E-value=0.0081 Score=49.81 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999884
No 247
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.75 E-value=0.0042 Score=48.18 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=17.9
Q ss_pred EEEEcCCCCChhHHHHHHhhcccccccCC
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSNYMKNYFY 214 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~~v~~~F~ 214 (265)
|-++|.+|+||||||+.+-.. +...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 458999999999999999883 555564
No 248
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.75 E-value=0.0081 Score=51.00 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 469999999999999999999974
No 249
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.74 E-value=0.0075 Score=49.54 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 468999999999999999999874
No 250
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.74 E-value=0.0082 Score=50.93 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999863
No 251
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.74 E-value=0.018 Score=52.08 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=37.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|.+..++.|.+++..+. -...+-++|.+|+||||+|+.+...
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999886543 2356778999999999999887654
No 252
>PLN02200 adenylate kinase family protein
Probab=95.73 E-value=0.0098 Score=51.09 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|.|.|++|+||||+|+.+...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
No 253
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.73 E-value=0.0088 Score=53.75 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|+++|++|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999998774
No 254
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.72 E-value=0.0085 Score=50.26 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999884
No 255
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.72 E-value=0.0085 Score=50.04 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999884
No 256
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.72 E-value=0.039 Score=49.53 Aligned_cols=63 Identities=14% Similarity=-0.008 Sum_probs=41.9
Q ss_pred HHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccc----cCCeeEEEe--CCCCHHHHHHHHHHHhCC
Q 038685 175 LLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKN----YFYCRAWVG--CEYYLHKVLDNIIKSVMP 238 (265)
Q Consensus 175 ~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~----~F~~~~wV~--~~~~~~~l~~~Il~~l~~ 238 (265)
+|..+=+.-.++-|+|.+|+|||||+..+.-...... .-..++|+. ..|+..++ ..+.+.++.
T Consensus 88 ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 88 LLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred HhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 3434445678999999999999999998876322211 123678998 55777764 334555443
No 257
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.72 E-value=0.024 Score=49.11 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=39.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe----CCCCHHHHHHHH---HHHhCC
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG----CEYYLHKVLDNI---IKSVMP 238 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~----~~~~~~~l~~~I---l~~l~~ 238 (265)
-..+.++|..|+||||+.+.|+. .-.+=.-.+.+. ++.+..++-++| +++++.
T Consensus 27 gef~vliGpSGsGKTTtLkMINr---Liept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigL 86 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMINR---LIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGL 86 (309)
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCCCceEEECCeecccCCHHHHHHhhhhhhhhccc
Confidence 45778999999999999999987 444445667776 667777776665 555543
No 258
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.0076 Score=50.54 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+++|+|..|.|||||++.+..-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999973
No 259
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.0085 Score=50.60 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 260
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.72 E-value=0.0088 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999863
No 261
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.72 E-value=0.016 Score=47.38 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|+|+|.+|+|||||++.+.++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 344599999999999999999873
No 262
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.71 E-value=0.0085 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 263
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.71 E-value=0.007 Score=53.21 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|+|.|..|+|||||++.+..-
T Consensus 1 iigI~G~sGsGKSTl~~~L~~l 22 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSL 22 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999863
No 264
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.71 E-value=0.0077 Score=55.82 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+.|+|+|..|+|||||++.+.+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999874
No 265
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.71 E-value=0.0075 Score=52.40 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++|+|.|-||+||||++-.+-.-
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~ 24 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAA 24 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHH
Confidence 57899999999999988877653
No 266
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.71 E-value=0.0086 Score=50.52 Aligned_cols=24 Identities=38% Similarity=0.299 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 267
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.70 E-value=0.038 Score=46.51 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=28.6
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
+.-.++-|.|.+|+|||||+..+.... ...=..++|++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~ 54 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYID 54 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEE
Confidence 457899999999999999999987642 22223566776
No 268
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.69 E-value=0.009 Score=47.26 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
+-|-++|..|+|||||++.+...+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 357799999999999999999864
No 269
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.0087 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 270
>PRK01184 hypothetical protein; Provisional
Probab=95.68 E-value=0.0089 Score=48.98 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCChhHHHHH
Q 038685 184 SVVAIVGSSGFDKTDFAGE 202 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~ 202 (265)
.+|+|+|++|+||||+++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4899999999999999883
No 271
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.68 E-value=0.0098 Score=52.86 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=21.4
Q ss_pred CCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 180 EPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 180 ~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+++.+||++.|-|||||||++-.+--
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHH
Confidence 34689999999999999997766544
No 272
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.68 E-value=0.0088 Score=50.64 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||.+.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 273
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=95.67 E-value=0.0092 Score=46.93 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHHhhcc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|+|+|.+|+|||||.+.+.+..
T Consensus 3 i~i~G~~~~GKStli~~l~~~~ 24 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENK 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999888753
No 274
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.66 E-value=0.024 Score=51.82 Aligned_cols=68 Identities=12% Similarity=-0.088 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCe-eEEEe---CCCCHHHHHHHHHHHhCCC
Q 038685 170 KELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYC-RAWVG---CEYYLHKVLDNIIKSVMPR 239 (265)
Q Consensus 170 ~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~-~~wV~---~~~~~~~l~~~Il~~l~~~ 239 (265)
..+++.+.--. +-.-+.|+|.+|+|||||++.+.+...- ++=+. ++|+. +.-.+.++++.+...+...
T Consensus 121 ~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 121 MRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred HhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 44677665311 2355689999999999999998874211 12233 35655 7778899999998877754
No 275
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.65 E-value=0.015 Score=49.67 Aligned_cols=43 Identities=28% Similarity=0.299 Sum_probs=33.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHh
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAY 204 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy 204 (265)
.++||-++.++.|--...+++ ..-+-|.||+|+||||-+..+-
T Consensus 27 ~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LA 69 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLA 69 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHH
Confidence 579999998888876665554 6667799999999999655443
No 276
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.65 E-value=0.0077 Score=47.96 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|++.|.+|+||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998774
No 277
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.64 E-value=0.0092 Score=47.60 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-|.|+|.+|+|||||+..+..+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45789999999999999998653
No 278
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.64 E-value=0.0095 Score=49.77 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 279
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=95.64 E-value=0.0091 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHHHHhhcc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|.|+|.+|+|||||++.+.+..
T Consensus 3 v~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCCc
Confidence 7899999999999999987753
No 280
>PRK13768 GTPase; Provisional
Probab=95.64 E-value=0.0094 Score=51.79 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|.|.||+||||++..+...
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~ 25 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDW 25 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHH
Confidence 368899999999999998887764
No 281
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.64 E-value=0.0089 Score=52.33 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
++|+|+|-|||||||++-.+-.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 6899999999999998886554
No 282
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.63 E-value=0.0092 Score=47.12 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.9
Q ss_pred EEEEcCCCCChhHHHHHHhhcc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|+|+|.+|+|||||.+.+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998763
No 283
>PRK13946 shikimate kinase; Provisional
Probab=95.62 E-value=0.0093 Score=49.11 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+.|.++|+.|+||||+++.+-+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 284
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.62 E-value=0.0093 Score=50.33 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||.+.+..-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 285
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.62 E-value=0.009 Score=49.11 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 286
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.62 E-value=0.014 Score=56.07 Aligned_cols=44 Identities=30% Similarity=0.316 Sum_probs=35.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
++++|.+..+..+...+.... ..-|-|+|.+|+||||+|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 479999999999988765443 33446899999999999999986
No 287
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.61 E-value=0.011 Score=46.75 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.8
Q ss_pred EEEEcCCCCChhHHHHHHhhcc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|.|+|.+|+|||||++.+.+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 6899999999999999988854
No 288
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.61 E-value=0.019 Score=56.20 Aligned_cols=47 Identities=23% Similarity=0.271 Sum_probs=37.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.++||-+..+..|.+.+..+. -...+-++|..|+||||+|+.+.+.-
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 689999999998888886543 23456789999999999999987743
No 289
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.61 E-value=0.0098 Score=50.73 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999874
No 290
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.61 E-value=0.01 Score=47.40 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|.|+|.+|+|||||++.+.+.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999887653
No 291
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.61 E-value=0.01 Score=49.51 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 292
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.60 E-value=0.015 Score=55.45 Aligned_cols=48 Identities=23% Similarity=0.394 Sum_probs=35.1
Q ss_pred CcccccHHHHHHHHHHHh---c-------CCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 160 RNIVGLEDEMKELLDLLI---V-------GEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~---~-------~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
++++|.+..++++.+++. . +....+-+-++|++|+|||+||+.+.+..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 578898888877766542 1 11223447799999999999999998853
No 293
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=95.60 E-value=0.0092 Score=47.61 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|+|+|.+|+|||||++.+.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999753
No 294
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.60 E-value=0.0098 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999884
No 295
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.60 E-value=0.018 Score=48.27 Aligned_cols=50 Identities=16% Similarity=0.077 Sum_probs=31.3
Q ss_pred EEEEEcCCCCChhHHHHHHhhccc-----ccccCC-eeEEEe-CCCCHHHHHHHHHH
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNSNY-----MKNYFY-CRAWVG-CEYYLHKVLDNIIK 234 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~~~-----v~~~F~-~~~wV~-~~~~~~~l~~~Il~ 234 (265)
+..|+|++|.||||++..+-.... ....-. ...+++ .+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 788999999999976666555321 112333 455555 66777888888877
No 296
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.60 E-value=0.0098 Score=51.62 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 297
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.59 E-value=0.01 Score=50.43 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999874
No 298
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.01 Score=50.59 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 299
>PRK12377 putative replication protein; Provisional
Probab=95.59 E-value=0.02 Score=49.61 Aligned_cols=36 Identities=17% Similarity=0.002 Sum_probs=27.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
...+-++|.+|+|||+||..|.+.. ......+++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEE
Confidence 4678899999999999999999953 33344456665
No 300
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.58 E-value=0.012 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|.|+|.+|+|||||+..+.++
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887653
No 301
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.58 E-value=0.0098 Score=50.72 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999873
No 302
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.57 E-value=0.01 Score=49.71 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999974
No 303
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.018 Score=55.05 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=38.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
+++||-+..+..|.+++..+. -...+-++|+.|+||||+|+.+-+.-
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999996653 23456799999999999999888743
No 304
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.56 E-value=0.01 Score=47.27 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHHhhcc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|.|+|.+|+|||||++.+.+..
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999998764
No 305
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.014 Score=57.84 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=51.0
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc---cccccC-CeeEEE-------e-CCC--C
Q 038685 159 KRNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN---YMKNYF-YCRAWV-------G-CEY--Y 224 (265)
Q Consensus 159 ~~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~---~v~~~F-~~~~wV-------~-~~~--~ 224 (265)
-++++||+++...+++.|....++-.| .+|-+|||||+++.-+...- .|=... +.+++. . ..| .
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGe 246 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGE 246 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCc
Confidence 367999999999999999876433333 56999999999765544421 121111 223332 1 222 4
Q ss_pred HHHHHHHHHHHhCCCC
Q 038685 225 LHKVLDNIIKSVMPRS 240 (265)
Q Consensus 225 ~~~l~~~Il~~l~~~~ 240 (265)
.++=++.+++.+....
T Consensus 247 FEeRlk~vl~ev~~~~ 262 (786)
T COG0542 247 FEERLKAVLKEVEKSK 262 (786)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 6777888888877543
No 306
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.56 E-value=0.01 Score=50.54 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 307
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.55 E-value=0.01 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999984
No 308
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=95.55 E-value=0.011 Score=46.75 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhh
Q 038685 185 VVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+|+|+|.+|+|||||.+.+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 799999999999999999874
No 309
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.54 E-value=0.01 Score=47.28 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=17.9
Q ss_pred EEEEcCCCCChhHHHHHHhh
Q 038685 186 VAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~ 205 (265)
|.|+|..|+|||||.+.+..
T Consensus 2 i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred EEEEecCCCCHHHHHHHHhh
Confidence 68999999999999998854
No 310
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.54 E-value=0.41 Score=43.27 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-+-++|..|+|||+||..|.+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~ 206 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE 206 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 66889999999999999999985
No 311
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.54 E-value=0.012 Score=48.85 Aligned_cols=23 Identities=17% Similarity=0.110 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999884
No 312
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.54 E-value=0.011 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 313
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.53 E-value=0.017 Score=54.79 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=36.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.++||-+...+.|.+.+..+. -..-+-++|+.|+||||+|+.+-.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence 689999888888887776543 234677999999999999988865
No 314
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.52 E-value=0.011 Score=50.68 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 315
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.52 E-value=0.011 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..|.|+|+.|+||||+++.+-+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999999874
No 316
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.52 E-value=0.036 Score=50.34 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=41.0
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhcccccc----cCCeeEEEe--CCCCHHHHHHHHHHHhCC
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNSNYMKN----YFYCRAWVG--CEYYLHKVLDNIIKSVMP 238 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~----~F~~~~wV~--~~~~~~~l~~~Il~~l~~ 238 (265)
+.-.++=|+|.+|+|||+|+..+.=...... .-..++||. .+|++.+|.+ |++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4567888999999999999998864322211 124689998 7788888765 5566554
No 317
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.52 E-value=0.011 Score=50.69 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 318
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.52 E-value=0.02 Score=46.27 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 167 DEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 167 ~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
+..++|..+|.. +++.++|..|+||+||.+.+..+.
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 445667776632 688899999999999999999874
No 319
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.51 E-value=0.0094 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|+|-|+.|+||||+++.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999885
No 320
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.51 E-value=0.0096 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
++|+|+|-|||||||++-.+-.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 5899999999999998776554
No 321
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.50 E-value=0.018 Score=57.61 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=36.6
Q ss_pred CcccccHHHHHHHHHHHhcC-----------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG-----------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~-----------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+++.|.+..++.+.+++... -...+-|-++|.+|+||||||+.+.+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 45889999999988876321 022456779999999999999999984
No 322
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.50 E-value=0.0091 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|-++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3679999999999999998764
No 323
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=95.49 E-value=0.011 Score=46.71 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=19.9
Q ss_pred EEEEcCCCCChhHHHHHHhhcc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|.|+|.+|+|||||++.+.++.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999998864
No 324
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.49 E-value=0.013 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.130 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
..|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998853
No 325
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.49 E-value=0.012 Score=47.76 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999988764
No 326
>PRK10908 cell division protein FtsE; Provisional
Probab=95.49 E-value=0.012 Score=49.86 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 327
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.49 E-value=0.032 Score=51.23 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=28.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-CCC
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-CEY 223 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-~~~ 223 (265)
-.++.++|+.|+||||++.++-.....+.-...+..++ .++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 46999999999999999999987422111123455555 444
No 328
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.49 E-value=0.013 Score=46.98 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEcCCCCChhHHHHHHhhcc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|.++|.+|+|||||++.+.++.
T Consensus 4 i~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999977544
No 329
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.49 E-value=0.024 Score=51.85 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=38.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+...+.+.+.+..+. -...+-++|+.|+||||+|+.+-+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999887643 2457789999999999999998774
No 330
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.49 E-value=0.04 Score=48.22 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|+|.|..|+||||+++.+...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~ 22 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI 22 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988763
No 331
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.48 E-value=0.011 Score=51.50 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=34.5
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-CC---C---CHHHHHHHHHHHhCC
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-CE---Y---YLHKVLDNIIKSVMP 238 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-~~---~---~~~~l~~~Il~~l~~ 238 (265)
+-.++|+||..|+|||||++.|-. ...--.-.+++. +. . ...+-..++++.++.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl 98 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGL 98 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCC
Confidence 457899999999999999999987 222223344444 22 2 233445556666553
No 332
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.48 E-value=0.024 Score=51.26 Aligned_cols=76 Identities=12% Similarity=0.221 Sum_probs=54.4
Q ss_pred CCcccccHHHHHHHHHHHhcC----CCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-------CCCC--H
Q 038685 159 KRNIVGLEDEMKELLDLLIVG----EPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-------CEYY--L 225 (265)
Q Consensus 159 ~~~~vG~e~~~~~l~~~L~~~----~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-------~~~~--~ 225 (265)
...++|.++..+++++.+... +.+-+|+-.+|+.|.||+||++.+.+- ... | .+|+- .+.. +
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~--le~-y--~~Y~l~~~Pm~e~PL~L~P 134 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG--LEE-Y--PIYTLKGCPMHEEPLHLFP 134 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH--hhe-E--EEEEecCCccccChhhhCC
Confidence 468999999999999998643 456789999999999999999999883 222 2 44442 2212 3
Q ss_pred HHHHHHHHHHhCCC
Q 038685 226 HKVLDNIIKSVMPR 239 (265)
Q Consensus 226 ~~l~~~Il~~l~~~ 239 (265)
.++-+.+.+.++..
T Consensus 135 ~~~r~~~~~~~~~~ 148 (358)
T PF08298_consen 135 KELRREFEDELGIR 148 (358)
T ss_pred HhHHHHHHHHhCcc
Confidence 45556666666653
No 333
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.48 E-value=0.012 Score=49.61 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 334
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.48 E-value=0.021 Score=55.83 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCCcccccHHHHHHHHHHHhcCC---CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 158 KKRNIVGLEDEMKELLDLLIVGE---PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~~~---~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-++++|-+...+++..||.... ..-.++.++|++|+||||+++.+...
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999986532 23467999999999999999999984
No 335
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.47 E-value=0.023 Score=49.32 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=38.2
Q ss_pred CCcccccHHHHHH---HHHHHhcC----CCCeEEEEEEcCCCCChhHHHHHHhhccc
Q 038685 159 KRNIVGLEDEMKE---LLDLLIVG----EPSLSVVAIVGSSGFDKTDFAGEAYNSNY 208 (265)
Q Consensus 159 ~~~~vG~e~~~~~---l~~~L~~~----~~~~~VI~IvG~gGvGKTTLa~~vy~~~~ 208 (265)
-+++||-++.+.+ |++.|.+. +...+-|-.+|++|.|||.+|+.+-|..+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC
Confidence 3689998877764 34555443 34578888999999999999999999653
No 336
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=95.47 E-value=0.012 Score=51.26 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++|+|.|-||+||||++..+-..
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~ 25 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAA 25 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 68999999999999999988774
No 337
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.012 Score=48.69 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999963
No 338
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.47 E-value=0.012 Score=48.83 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999884
No 339
>PRK15453 phosphoribulokinase; Provisional
Probab=95.46 E-value=0.014 Score=51.42 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+..+|+|.|.+|+||||+++.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998875
No 340
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.46 E-value=0.012 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 341
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.46 E-value=0.012 Score=48.93 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-.+++|+|..|.|||||++.+...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999884
No 342
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.45 E-value=0.012 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|.|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 343
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.45 E-value=0.012 Score=50.47 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 344
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.45 E-value=0.012 Score=49.13 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 345
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.44 E-value=0.012 Score=49.75 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 346
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.44 E-value=0.014 Score=54.03 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
...-+|||.|..|+|||||++.+..
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999965
No 347
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.43 E-value=0.021 Score=56.18 Aligned_cols=46 Identities=28% Similarity=0.324 Sum_probs=38.2
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..+..|.+++..+. -...+-++|..|+||||+|+.+-+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 689999999999999987643 2356789999999999999988664
No 348
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.43 E-value=0.012 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|.|||||++.+..
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999984
No 349
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.42 E-value=0.041 Score=51.36 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|.++|.+|+||||++.++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988753
No 350
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.42 E-value=0.013 Score=49.14 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-.+++|+|..|.|||||++.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999984
No 351
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.42 E-value=0.011 Score=51.40 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChhHHHHHHhh
Q 038685 185 VVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+|+|.|-|||||||++-.+-.
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~ 22 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSV 22 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHH
Confidence 689999999999997766544
No 352
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.42 E-value=0.012 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 353
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.012 Score=49.11 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999999884
No 354
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.41 E-value=0.013 Score=47.56 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999873
No 355
>PRK14532 adenylate kinase; Provisional
Probab=95.41 E-value=0.012 Score=48.45 Aligned_cols=21 Identities=14% Similarity=0.155 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|-|.|++|+||||+|+.+-..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999763
No 356
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.40 E-value=0.023 Score=47.72 Aligned_cols=53 Identities=23% Similarity=0.107 Sum_probs=35.5
Q ss_pred ccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 164 GLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 164 G~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
.+.......++.|. +..++.+.|++|.|||.||-..--+.-..++|+..+++.
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34455667777776 256899999999999999987766544447788887775
No 357
>PRK13948 shikimate kinase; Provisional
Probab=95.40 E-value=0.014 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
....|.++||.|+||||+++.+-+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4577889999999999999999874
No 358
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.40 E-value=0.031 Score=46.92 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=31.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+++|-+..+..|.-...++ .-|-++|.+|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~----h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG----HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC----CCeEEECCCCCCHHHHHHHHHH
Confidence 57899888888776655542 4567899999999999999876
No 359
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.39 E-value=0.012 Score=49.07 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 038685 185 VVAIVGSSGFDKTDFAGEAY 204 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy 204 (265)
+++|+|..|+|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999987
No 360
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=95.39 E-value=0.013 Score=46.83 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|.++|.+|+|||||.+.+.+.
T Consensus 4 v~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988764
No 361
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.024 Score=54.53 Aligned_cols=46 Identities=24% Similarity=0.266 Sum_probs=37.3
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|-+..+..|.+++..+. -...+-++|..|+||||+|+.+-..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999988887643 2345668999999999999998664
No 362
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.39 E-value=0.012 Score=47.54 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|+|+|.+|+|||||++.+.+.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4679999999999999999754
No 363
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.38 E-value=0.014 Score=46.13 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468899999999999999999884
No 364
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.38 E-value=0.014 Score=47.81 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=26.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
-.+++|+|..|.|||||++.+..-. ....-.+++.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~ 59 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLD 59 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEEC
Confidence 4689999999999999999999842 2234445554
No 365
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.38 E-value=0.013 Score=50.50 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999864
No 366
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.38 E-value=0.04 Score=42.61 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=33.0
Q ss_pred CcccccHHHHHHHHHHH----hcC-CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLL----IVG-EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L----~~~-~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..++|-.-..+.+++.| ... +++.-|++..|..|+|||.+++.|-++
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 45677555555555544 332 457899999999999999987777654
No 367
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.37 E-value=0.013 Score=50.81 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 30 RSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999963
No 368
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.37 E-value=0.033 Score=44.39 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHHhc-CCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 164 GLEDEMKELLDLLIV-GEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 164 G~e~~~~~l~~~L~~-~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|.+.-.+.+.+++.. ....-..|+++|++|+||+||.+.+..+.
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC
Confidence 444444455444321 11223567899999999999999998854
No 369
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.36 E-value=0.013 Score=49.99 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999864
No 370
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.36 E-value=0.04 Score=47.16 Aligned_cols=49 Identities=20% Similarity=0.344 Sum_probs=31.3
Q ss_pred CCeEEEEEEcCCCCChhHHHH-HHhhcccccccCCeeEEEeCCCCHHHHHHHH
Q 038685 181 PSLSVVAIVGSSGFDKTDFAG-EAYNSNYMKNYFYCRAWVGCEYYLHKVLDNI 232 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~-~vy~~~~v~~~F~~~~wV~~~~~~~~l~~~I 232 (265)
+.-.++.|.|.+|+|||||+. .+++- .+.. ..+++++-+-+..++++.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~--~~~g-~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF--LQNG-YSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH--HhCC-CcEEEEeCCCCHHHHHHHH
Confidence 345699999999999999975 44542 2222 3456676223445666665
No 371
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.36 E-value=0.013 Score=50.70 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 372
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.35 E-value=0.014 Score=50.46 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 31 QEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 373
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.35 E-value=0.025 Score=57.34 Aligned_cols=46 Identities=26% Similarity=0.336 Sum_probs=39.4
Q ss_pred cccccHHHHHHHHHHHhcC-CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 161 NIVGLEDEMKELLDLLIVG-EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 161 ~~vG~e~~~~~l~~~L~~~-~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.++||+.+.+.|...+..- .....|+.+.|..|||||+|++.|...
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~ 47 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKP 47 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHH
Confidence 4789999999999888643 345779999999999999999999984
No 374
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.35 E-value=0.015 Score=48.61 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..|+|.|..|+|||||++.+.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999984
No 375
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.35 E-value=0.042 Score=46.68 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=29.5
Q ss_pred ccc-HHHHHHHHHHHhcC-CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 163 VGL-EDEMKELLDLLIVG-EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 163 vG~-e~~~~~l~~~L~~~-~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|- ....-.....+... +.....+-|+|..|+|||.|++.+++.
T Consensus 12 ~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~ 57 (219)
T PF00308_consen 12 VGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANE 57 (219)
T ss_dssp -TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 452 33333444444443 334556789999999999999999995
No 376
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.35 E-value=0.024 Score=54.10 Aligned_cols=47 Identities=19% Similarity=0.095 Sum_probs=37.6
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.+++|-+..+..|...+..+. -..-+-++|+.|+||||+|+.+.+.-
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999998888888775543 23566799999999999999998753
No 377
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.34 E-value=0.032 Score=48.69 Aligned_cols=24 Identities=25% Similarity=0.201 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.|..-
T Consensus 35 Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 378
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.34 E-value=0.014 Score=50.41 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAY 204 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy 204 (265)
-.+++|+|..|.|||||++.+.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 29 KSVVAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999995
No 379
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.34 E-value=0.024 Score=55.43 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=38.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
+++||-+..++.|.+++..+. -...+-++|..|+||||||+.+-+.-
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999887653 23456789999999999999887643
No 380
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.34 E-value=0.015 Score=46.93 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999999873
No 381
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.34 E-value=0.015 Score=47.10 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458899999999999999999985
No 382
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.33 E-value=0.014 Score=46.55 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
No 383
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.015 Score=47.34 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 384
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.33 E-value=0.014 Score=46.37 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=18.1
Q ss_pred EEEEcCCCCChhHHHHHHhh
Q 038685 186 VAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~ 205 (265)
|.|+|.+|+|||||++.+.+
T Consensus 3 i~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999998864
No 385
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.33 E-value=0.014 Score=50.09 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999884
No 386
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.013 Score=50.68 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|+.|.|||||.|.+..
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 37899999999999999999998
No 387
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.32 E-value=0.028 Score=46.81 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 169 MKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 169 ~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+.+..++.+. -++..|.|.+|.||||+++.+...
T Consensus 6 Q~~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~~ 41 (196)
T PF13604_consen 6 QREAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAEA 41 (196)
T ss_dssp HHHHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHHH
Confidence 344445454433 356778999999999999998874
No 388
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.32 E-value=0.048 Score=49.52 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=43.1
Q ss_pred HhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccc----cCCeeEEEe--CCCCHHHHHHHHHHHhCC
Q 038685 176 LIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKN----YFYCRAWVG--CEYYLHKVLDNIIKSVMP 238 (265)
Q Consensus 176 L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~----~F~~~~wV~--~~~~~~~l~~~Il~~l~~ 238 (265)
|..+=+.-.++-|+|.+|+|||+|+..++-...... .-..++|+. .+|++.++. +|++.++.
T Consensus 116 L~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 116 LEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred hcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 334435578888999999999999998875432211 113789999 778887764 55666654
No 389
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.32 E-value=0.017 Score=47.30 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|.|.|.+|+||||||+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999974
No 390
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.025 Score=55.20 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=36.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+++||-+..+..|.+++..+. -...+-++|..|+||||+|+.+-+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 579998888888888887653 235667999999999999999844
No 391
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.014 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 392
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=95.32 E-value=0.016 Score=46.26 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=17.5
Q ss_pred EEEEcCCCCChhHHHHHHhh
Q 038685 186 VAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~ 205 (265)
|.|+|.+|+|||||+....+
T Consensus 2 i~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 68999999999999977654
No 393
>PRK02496 adk adenylate kinase; Provisional
Probab=95.32 E-value=0.013 Score=48.02 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|.|.|++|+||||+++.+...
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 394
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.32 E-value=0.014 Score=49.94 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 395
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.31 E-value=0.014 Score=50.64 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999974
No 396
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.31 E-value=0.017 Score=50.34 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=18.0
Q ss_pred EEEEcCCCCChhHHHHHHhh
Q 038685 186 VAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~ 205 (265)
|-+.|.+|+|||+||+.+..
T Consensus 24 vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 34899999999999999986
No 397
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.31 E-value=0.013 Score=50.99 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999974
No 398
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.30 E-value=0.015 Score=47.46 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999884
No 399
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.30 E-value=0.014 Score=50.17 Aligned_cols=24 Identities=38% Similarity=0.285 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999864
No 400
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.30 E-value=0.014 Score=50.27 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|.|||||++.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 31 NEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999964
No 401
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.29 E-value=0.015 Score=47.70 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999974
No 402
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.29 E-value=0.013 Score=50.16 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|.|.|++|+||||+|+.+-+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999764
No 403
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.28 E-value=0.015 Score=48.90 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.++..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999985
No 404
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.28 E-value=0.015 Score=49.38 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|+|.|+.|+||||+++.+...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEK 25 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 405
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.28 E-value=0.014 Score=49.89 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 406
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.28 E-value=0.027 Score=46.11 Aligned_cols=36 Identities=17% Similarity=0.055 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 170 KELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 170 ~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+..++ ....+-..|.|+|.+|+|||||++.+..+
T Consensus 5 ~~~~~~~-~~~~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 5 YDILASL-GLWNKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred HHHHHHh-ccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455533 22123355689999999999999998764
No 407
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.27 E-value=0.015 Score=50.26 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 30 NSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999863
No 408
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.27 E-value=0.015 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 409
>PRK07429 phosphoribulokinase; Provisional
Probab=95.26 E-value=0.017 Score=52.09 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+.-+|+|.|..|+|||||++.+..-
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~l 31 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADL 31 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhH
Confidence 45789999999999999999999874
No 410
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.016 Score=47.00 Aligned_cols=24 Identities=33% Similarity=0.266 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||.+.+..-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468899999999999999999884
No 411
>PRK14974 cell division protein FtsY; Provisional
Probab=95.25 E-value=0.017 Score=52.29 Aligned_cols=54 Identities=19% Similarity=0.117 Sum_probs=33.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-CCCCH--HHHHHHHHHHhC
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-CEYYL--HKVLDNIIKSVM 237 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-~~~~~--~~l~~~Il~~l~ 237 (265)
+..+|.++|++|+||||++..+...-. ...+ .++.+. -+|.. .+-++.....++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lg 195 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAGDTFRAGAIEQLEEHAERLG 195 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecCCcCcHHHHHHHHHHHHHcC
Confidence 468999999999999997777775321 1223 334455 44433 233444555554
No 412
>PRK00089 era GTPase Era; Reviewed
Probab=95.24 E-value=0.017 Score=51.03 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+..+|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~ 28 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQ 28 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCC
Confidence 4688999999999999999998764
No 413
>PRK14531 adenylate kinase; Provisional
Probab=95.24 E-value=0.016 Score=47.65 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..|.|+|++|+||||+++.+-+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999774
No 414
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.23 E-value=0.029 Score=53.13 Aligned_cols=43 Identities=21% Similarity=0.188 Sum_probs=29.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-CCCCH
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-CEYYL 225 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-~~~~~ 225 (265)
-.||+++|..|+||||++.++......+..-..+..|+ .++.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~Ri 299 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRI 299 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccch
Confidence 47999999999999999999997532222122445666 44443
No 415
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.23 E-value=0.057 Score=48.46 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=41.9
Q ss_pred cCCCCeEEEEEEcCCCCChhHHHHHHhhcccccc----cCCeeEEEe--CCCCHHHHHHHHHHHhCC
Q 038685 178 VGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKN----YFYCRAWVG--CEYYLHKVLDNIIKSVMP 238 (265)
Q Consensus 178 ~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~----~F~~~~wV~--~~~~~~~l~~~Il~~l~~ 238 (265)
.+=+.-+++-|+|.+|+|||+|+..+.-...... .=..++||. .+|++..|.+ +++.++.
T Consensus 91 GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 91 GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 3334568899999999999999988764322221 124689999 6688888764 5666654
No 416
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=95.23 E-value=0.015 Score=46.70 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-|.++|.+|+|||||...+...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~ 25 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAG 25 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998664
No 417
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.23 E-value=0.2 Score=44.53 Aligned_cols=84 Identities=15% Similarity=0.100 Sum_probs=54.9
Q ss_pred CCcccccHHH---HHHHHHHHhcCC-CCeEEEEEEcCCCCChhHHHHHHhhccccc-----ccCCeeEEEe--CCCCHHH
Q 038685 159 KRNIVGLEDE---MKELLDLLIVGE-PSLSVVAIVGSSGFDKTDFAGEAYNSNYMK-----NYFYCRAWVG--CEYYLHK 227 (265)
Q Consensus 159 ~~~~vG~e~~---~~~l~~~L~~~~-~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~-----~~F~~~~wV~--~~~~~~~ 227 (265)
.+..+|.... .+.|.++|.... ....-+.|||..|.||||+++......-.. ..+ .++.|. ...+...
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERR 111 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHH
Confidence 3567775433 334444444432 344557899999999999999998642111 112 233333 7789999
Q ss_pred HHHHHHHHhCCCCCCC
Q 038685 228 VLDNIIKSVMPRSMGS 243 (265)
Q Consensus 228 l~~~Il~~l~~~~~~~ 243 (265)
+...|+.+++......
T Consensus 112 ~Y~~IL~~lgaP~~~~ 127 (302)
T PF05621_consen 112 FYSAILEALGAPYRPR 127 (302)
T ss_pred HHHHHHHHhCcccCCC
Confidence 9999999999865443
No 418
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.23 E-value=0.016 Score=48.30 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 419
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.03 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.-.+|+++|..|+||||++..+-.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998765
No 420
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.015 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 50 Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 421
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.23 E-value=0.015 Score=51.08 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 422
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.22 E-value=0.015 Score=50.88 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 368999999999999999999863
No 423
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.22 E-value=0.016 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|-++|.+|+||||+|+.+...
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~ 25 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAK 25 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 57888999999999999998764
No 424
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.016 Score=49.37 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999864
No 425
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=95.22 E-value=0.015 Score=46.62 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998875
No 426
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.21 E-value=0.015 Score=51.70 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 427
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.21 E-value=0.015 Score=50.84 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 428
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.21 E-value=0.015 Score=50.46 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 39 Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 39 NQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999853
No 429
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.20 E-value=0.016 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 33 GKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 430
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.20 E-value=0.016 Score=49.41 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999974
No 431
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.20 E-value=0.016 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 26 GEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 432
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.20 E-value=0.042 Score=44.72 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=28.7
Q ss_pred EEEEcCCCCChhHHHHHHhhcccccccCCeeEEEeCCCCHHHHHHH
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVGCEYYLHKVLDN 231 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~~~~~~~~l~~~ 231 (265)
+-|.|.+|+|||+|+..+....- +.. ..++|++-+.+...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~g-~~v~~~s~e~~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-ARG-EPGLYVTLEESPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HCC-CcEEEEECCCCHHHHHHH
Confidence 57899999999999998765422 221 457788822334444443
No 433
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.025 Score=55.31 Aligned_cols=47 Identities=17% Similarity=0.067 Sum_probs=36.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.+++|-+..+..|.+.+..+. -...+-++|+.|+||||+|+.+-+.-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999888888888776542 23457799999999999998776643
No 434
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.20 E-value=0.016 Score=50.82 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|.|||||++.|..
T Consensus 50 Ge~~~I~G~nGsGKSTLl~~i~G 72 (271)
T PRK14238 50 NEVTAIIGPSGCGKSTYIKTLNR 72 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999976
No 435
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.19 E-value=0.016 Score=48.78 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-.+++|+|..|.|||||++.+..-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999874
No 436
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.19 E-value=0.016 Score=50.24 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 32 GEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999984
No 437
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.18 E-value=0.016 Score=49.49 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 478999999999999999999974
No 438
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.18 E-value=0.015 Score=50.63 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhHHHHHHhh
Q 038685 185 VVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~ 205 (265)
||+|.|-||+||||++-.+-.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~ 22 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSV 22 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 789999999999997776544
No 439
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.18 E-value=0.016 Score=50.17 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 31 GDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999985
No 440
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.016 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 30 NGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999863
No 441
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.18 E-value=0.053 Score=55.18 Aligned_cols=48 Identities=13% Similarity=0.318 Sum_probs=37.9
Q ss_pred CCcccccHHHHHHHHHHHhcC-------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 159 KRNIVGLEDEMKELLDLLIVG-------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 159 ~~~~vG~e~~~~~l~~~L~~~-------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...++|-+..+..+...+... +..+.++-++|+.|+||||||+.+.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 357899999988888877531 222457889999999999999999973
No 442
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.18 E-value=0.016 Score=51.21 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 37 Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 37 NKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999863
No 443
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.17 E-value=0.017 Score=48.42 Aligned_cols=24 Identities=29% Similarity=0.273 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||.+.+..-
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 444
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=95.17 E-value=0.016 Score=46.09 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhhcc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.|.|+|.+|+|||||++.+.+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~ 24 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK 24 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998853
No 445
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.17 E-value=0.017 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 29 NQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999994
No 446
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.17 E-value=0.016 Score=53.21 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+.-+|+|+|..|+|||||+..+...
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~ 28 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRR 28 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999984
No 447
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.16 E-value=0.013 Score=45.87 Aligned_cols=45 Identities=29% Similarity=0.205 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 163 VGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 163 vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
||.-..+.++.+.+..-...-.-|-|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 455566677777665422234556799999999999999999953
No 448
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=95.16 E-value=0.017 Score=45.93 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.-|+|+|.+|+|||||.+.+.++.
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~ 27 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNE 27 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999997653
No 449
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.16 E-value=0.016 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.++++.|+.|+|||||.+.|--
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5889999999999999999965
No 450
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=95.15 E-value=0.021 Score=45.78 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=18.4
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|.|+|.+|+|||||++.+.+.
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~ 23 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYAND 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999887654
No 451
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.15 E-value=0.017 Score=48.66 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.++.-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 27 GQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999974
No 452
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.15 E-value=0.015 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.230 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 33 GEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 468999999999999999999874
No 453
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.15 E-value=0.033 Score=51.52 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=36.8
Q ss_pred CcccccHHHHHHHHHHHhcCCC--------CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 160 RNIVGLEDEMKELLDLLIVGEP--------SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~--------~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
++++|-+..++.|.+.+..+.. -..-+-++|+.|+||||+|+.+-.
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4789999999999998865421 245577999999999999998855
No 454
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.15 E-value=0.025 Score=51.22 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=33.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+.++|.+..+..+.-.+.... ..-+-+.|.+|+||||||+.+-+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~--~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPG--IGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccC--CCcEEEEcCCCCCHHHHHHHHHH
Confidence 578999988888775554322 34477999999999999999854
No 455
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=95.14 E-value=0.015 Score=51.71 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
++|+|+|-||+||||++-.+-.
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~ 22 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSH 22 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999888776
No 456
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.14 E-value=0.017 Score=52.73 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.....++|||++|+|||.+|+.|++.-
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999999953
No 457
>CHL00176 ftsH cell division protein; Validated
Probab=95.14 E-value=0.02 Score=56.21 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=35.6
Q ss_pred CcccccHHHHHHHHHHH---hcC-------CCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 160 RNIVGLEDEMKELLDLL---IVG-------EPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L---~~~-------~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.+++|.++.++++.+.+ ... ....+-|-++|++|+|||+||+.+.+..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 57889888887776654 221 1224567899999999999999998853
No 458
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.14 E-value=0.018 Score=48.81 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 33 GQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCc
Confidence 468999999999999999999864
No 459
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.14 E-value=0.03 Score=49.47 Aligned_cols=63 Identities=17% Similarity=0.138 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe--CCCCHHHHHHH
Q 038685 169 MKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG--CEYYLHKVLDN 231 (265)
Q Consensus 169 ~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~--~~~~~~~l~~~ 231 (265)
-.+|+..|.....+..||||.|.||+||+||.-.+-....-..|=-.++=|. ++|+--.|+-+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 4567777766666789999999999999999988777543333322233333 55665555433
No 460
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=95.14 E-value=0.02 Score=45.57 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|.|+|.+|+|||||+..+.+.
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~ 24 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999887653
No 461
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.14 E-value=0.017 Score=49.86 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 33 GEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999873
No 462
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=95.13 E-value=0.017 Score=45.59 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhHHHHHHhhcc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~~ 207 (265)
|.|+|.+|+|||||++.+.+..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~ 23 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAE 23 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6799999999999999997653
No 463
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=95.13 E-value=0.017 Score=50.06 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.|..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 27 GSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999874
No 464
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.13 E-value=0.017 Score=50.40 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLl~~l~G 67 (267)
T PRK14235 45 KTVTAFIGPSGCGKSTFLRCLNR 67 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 465
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.13 E-value=0.017 Score=48.59 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 466
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=95.13 E-value=0.017 Score=46.48 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|.++|.+|+|||||++.+.+.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998664
No 467
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.13 E-value=0.017 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G 55 (254)
T PRK14273 33 NSITALIGPSGCGKSTFLRTLNR 55 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 468
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.13 E-value=0.017 Score=49.05 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999984
No 469
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.13 E-value=0.034 Score=53.89 Aligned_cols=49 Identities=16% Similarity=0.065 Sum_probs=34.9
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 158 KKRNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.++..+.|.+..+.|.+..-.....-.+|-|+|+.|+||||+|+.+...
T Consensus 367 ~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~ 415 (568)
T PRK05537 367 EIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVK 415 (568)
T ss_pred CCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHH
Confidence 4455666666666555544333344568999999999999999999874
No 470
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=95.12 E-value=0.011 Score=45.75 Aligned_cols=19 Identities=11% Similarity=0.261 Sum_probs=17.5
Q ss_pred EEcCCCCChhHHHHHHhhc
Q 038685 188 IVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 188 IvG~gGvGKTTLa~~vy~~ 206 (265)
|+|.+|+|||||++.+++.
T Consensus 1 i~G~~gsGKstl~~~l~~~ 19 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ 19 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc
Confidence 5899999999999999975
No 471
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.12 E-value=0.017 Score=50.50 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+...
T Consensus 39 Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 39 GKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999763
No 472
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.016 Score=46.05 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
..-|-|.|.+|+|||||+..|-.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH
Confidence 34567999999999999999875
No 473
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.12 E-value=0.017 Score=50.36 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+...
T Consensus 46 Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 46 NKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999974
No 474
>PRK09183 transposase/IS protein; Provisional
Probab=95.12 E-value=0.017 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+.|+|.+|+||||||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 45679999999999999999764
No 475
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=95.11 E-value=0.019 Score=47.10 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+.-|+|+|.+|+|||||.+.+.+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4677899999999999999999985
No 476
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.11 E-value=0.018 Score=50.24 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|.|||||++.+..
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 36 NQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999984
No 477
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.023 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+.-||||-|+...||||||+.+..
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~ 26 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHR 26 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHH
Confidence 456899999999999999999765
No 478
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.11 E-value=0.065 Score=48.30 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=37.6
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
++++|....+..+.+.+..-...-.-|-|+|-.|+||+++|+.|+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999888865333344567999999999999999997
No 479
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=95.11 E-value=0.018 Score=45.59 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|+|+|.+|+|||||+..+.++
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4689999999999999886543
No 480
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.10 E-value=0.017 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|.|||||++.+..
T Consensus 47 Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 47 HAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999965
No 481
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.09 E-value=0.019 Score=47.90 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
..|+|+|+.|+||||+++.+.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~ 23 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQ 23 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999876
No 482
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.09 E-value=0.029 Score=52.44 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+|.++|++|+||||++..+-..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999988877553
No 483
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.08 E-value=0.018 Score=48.13 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+++|.|..|.|||||++.|.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999999875
No 484
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=95.08 E-value=0.018 Score=46.20 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-|.|+|.+|+|||||...+.+.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999875
No 485
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.08 E-value=0.019 Score=48.81 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.-.+++++|..|+|||||.+.|..-.
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999999854
No 486
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.08 E-value=0.019 Score=49.09 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+|+|+|..|.|||||.+.+..
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999987
No 487
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.08 E-value=0.018 Score=50.78 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 33 GSWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcc
Confidence 468999999999999999999974
No 488
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.07 E-value=0.018 Score=49.79 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 32 NRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999974
No 489
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.07 E-value=0.018 Score=50.38 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 35 GEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 490
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.07 E-value=0.019 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
++|+|.|-||+||||++-.+-.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~ 24 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSA 24 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999997777655
No 491
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.07 E-value=0.018 Score=49.79 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 492
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=95.06 E-value=0.018 Score=46.01 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.9
Q ss_pred EEEEcCCCCChhHHHHHHh
Q 038685 186 VAIVGSSGFDKTDFAGEAY 204 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy 204 (265)
|+++|.+|+|||||.+...
T Consensus 3 i~vvG~~gvGKTsli~~~~ 21 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYL 21 (158)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999998753
No 493
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.06 E-value=0.018 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999985
No 494
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.06 E-value=0.017 Score=48.52 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|.|.|++|+||||+|+.+-..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999998763
No 495
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.06 E-value=0.018 Score=48.86 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhh
Q 038685 185 VVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+|+|+||.|+||+|.|+.+-+
T Consensus 2 iI~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 799999999999999999865
No 496
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.05 E-value=0.073 Score=46.90 Aligned_cols=51 Identities=16% Similarity=0.072 Sum_probs=40.6
Q ss_pred cCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe--CCCCHHHHHH
Q 038685 178 VGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG--CEYYLHKVLD 230 (265)
Q Consensus 178 ~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~--~~~~~~~l~~ 230 (265)
.+=+.-.++=|+|+.|.||||||-+++-. ++..-..++|+. ..+++..+..
T Consensus 55 GGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 55 GGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred CCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH
Confidence 44456789999999999999999998874 445556899999 6688876644
No 497
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.05 E-value=0.045 Score=49.30 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=29.2
Q ss_pred CCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 179 GEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 179 ~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
+=+.-+++=|+|++|+||||||..+.-. ....-..++||.
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId 90 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFID 90 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEC
Confidence 3355678889999999999999997764 223334566665
No 498
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.05 E-value=0.041 Score=52.72 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=42.8
Q ss_pred CcccccHHHHHHHHHHHhc---CCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 160 RNIVGLEDEMKELLDLLIV---GEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~---~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
.+++--..-.+++..||.. +....+++-+.|++|+||||.++.+.+. --|+.+=|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 4555556777888888864 2334568999999999999999999984 2466677765
No 499
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.05 E-value=0.019 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 29 NQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 500
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.05 E-value=0.019 Score=49.73 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 28 GKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
Done!