Query 038685
Match_columns 265
No_of_seqs 154 out of 1555
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 23:47:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qfl_A MLA10; coiled-coil, (CC 99.6 4.3E-16 1.5E-20 118.2 8.8 84 3-98 1-84 (115)
2 2a5y_B CED-4; apoptosis; HET: 99.6 1.4E-15 4.9E-20 144.3 11.0 78 163-240 131-215 (549)
3 3sfz_A APAF-1, apoptotic pepti 99.3 2.6E-12 8.9E-17 131.2 10.1 102 157-260 121-228 (1249)
4 1vt4_I APAF-1 related killer D 99.3 2.7E-12 9.1E-17 128.0 8.1 75 161-236 129-206 (1221)
5 1z6t_A APAF-1, apoptotic prote 99.2 3.2E-11 1.1E-15 114.8 10.3 80 158-237 122-207 (591)
6 2qby_B CDC6 homolog 3, cell di 98.4 9E-07 3.1E-11 79.2 10.1 79 160-238 20-109 (384)
7 1w5s_A Origin recognition comp 98.4 5.5E-07 1.9E-11 81.3 7.8 81 159-239 21-114 (412)
8 2qen_A Walker-type ATPase; unk 98.3 1E-06 3.5E-11 77.5 7.8 70 157-237 9-86 (350)
9 2qby_A CDC6 homolog 1, cell di 98.2 2.2E-06 7.4E-11 76.3 8.2 78 159-238 19-103 (386)
10 2v1u_A Cell division control p 98.2 5E-06 1.7E-10 74.0 10.4 81 159-239 18-106 (387)
11 1fnn_A CDC6P, cell division co 98.2 1.7E-05 5.8E-10 70.7 13.0 78 160-239 17-101 (389)
12 2fna_A Conserved hypothetical 98.2 3.6E-06 1.2E-10 74.0 7.8 68 158-236 11-85 (357)
13 1jbk_A CLPB protein; beta barr 98.0 7.7E-06 2.6E-10 65.0 5.5 45 160-206 22-66 (195)
14 2chg_A Replication factor C sm 97.9 4E-05 1.4E-09 62.2 8.3 45 160-206 17-61 (226)
15 2p65_A Hypothetical protein PF 97.8 1.3E-05 4.5E-10 63.6 4.6 45 160-206 22-66 (187)
16 1njg_A DNA polymerase III subu 97.8 1.9E-05 6.6E-10 64.9 5.4 47 160-207 23-69 (250)
17 3te6_A Regulatory protein SIR3 97.7 4.6E-05 1.6E-09 67.1 6.4 79 160-239 20-108 (318)
18 1sxj_B Activator 1 37 kDa subu 97.5 0.00013 4.3E-09 63.3 6.4 45 160-206 21-65 (323)
19 3n70_A Transport activator; si 97.5 6.6E-05 2.3E-09 58.1 3.9 46 161-206 2-47 (145)
20 1iqp_A RFCS; clamp loader, ext 97.4 0.00018 6.1E-09 62.5 6.1 45 160-206 25-69 (327)
21 3h4m_A Proteasome-activating n 97.4 0.00012 4.1E-09 62.7 4.6 48 159-206 16-74 (285)
22 2w58_A DNAI, primosome compone 97.3 0.00034 1.1E-08 56.7 6.0 51 168-220 37-89 (202)
23 3cf0_A Transitional endoplasmi 97.3 0.00025 8.5E-09 61.7 5.5 47 160-206 15-72 (301)
24 3pfi_A Holliday junction ATP-d 97.3 0.00018 6E-09 63.3 4.5 47 160-206 29-78 (338)
25 3pxg_A Negative regulator of g 97.3 0.00026 8.9E-09 65.5 5.7 45 160-206 180-224 (468)
26 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00023 8E-09 59.9 4.6 47 160-206 6-62 (262)
27 3c8u_A Fructokinase; YP_612366 97.2 0.00028 9.7E-09 57.8 5.0 38 169-206 8-45 (208)
28 3co5_A Putative two-component 97.2 8.4E-05 2.9E-09 57.4 1.4 46 160-206 4-50 (143)
29 3uk6_A RUVB-like 2; hexameric 97.2 0.00037 1.3E-08 61.8 5.6 49 159-207 43-94 (368)
30 3syl_A Protein CBBX; photosynt 97.2 0.00028 9.6E-09 61.0 4.6 46 161-206 32-90 (309)
31 3ec2_A DNA replication protein 97.2 0.00029 9.9E-09 56.1 4.3 24 183-206 38-61 (180)
32 3b9p_A CG5977-PA, isoform A; A 97.2 0.00029 1E-08 60.7 4.6 47 160-206 21-77 (297)
33 1sxj_D Activator 1 41 kDa subu 97.2 0.00026 9E-09 62.2 4.4 45 160-206 37-81 (353)
34 1in4_A RUVB, holliday junction 97.2 0.00029 1E-08 62.2 4.5 47 160-206 25-74 (334)
35 3eie_A Vacuolar protein sortin 97.1 0.0004 1.4E-08 60.9 5.1 47 160-206 18-74 (322)
36 1hqc_A RUVB; extended AAA-ATPa 97.1 0.00022 7.5E-09 62.1 3.3 47 160-206 12-61 (324)
37 3d8b_A Fidgetin-like protein 1 97.1 0.00035 1.2E-08 62.3 4.7 47 160-206 84-140 (357)
38 2bjv_A PSP operon transcriptio 97.1 0.00095 3.2E-08 56.5 7.2 47 160-206 6-52 (265)
39 1jr3_A DNA polymerase III subu 97.1 0.00049 1.7E-08 60.9 5.6 47 160-207 16-62 (373)
40 1lv7_A FTSH; alpha/beta domain 97.1 0.00041 1.4E-08 58.5 4.9 47 160-206 12-68 (257)
41 1rz3_A Hypothetical protein rb 97.1 0.00061 2.1E-08 55.5 5.6 41 165-205 3-44 (201)
42 3bos_A Putative DNA replicatio 97.1 0.00069 2.4E-08 55.8 6.0 45 160-206 28-75 (242)
43 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.00057 1.9E-08 60.1 5.6 47 160-206 12-68 (322)
44 1sxj_A Activator 1 95 kDa subu 97.1 0.00059 2E-08 63.9 5.7 47 160-206 39-100 (516)
45 3lw7_A Adenylate kinase relate 97.0 0.00029 1E-08 55.1 3.0 20 184-203 2-21 (179)
46 1odf_A YGR205W, hypothetical 3 97.0 0.0007 2.4E-08 58.8 5.7 53 168-220 12-69 (290)
47 1ofh_A ATP-dependent HSL prote 97.0 0.0004 1.4E-08 59.8 4.0 47 160-206 15-73 (310)
48 2chq_A Replication factor C sm 97.0 0.00036 1.2E-08 60.3 3.4 45 160-206 17-61 (319)
49 3pvs_A Replication-associated 97.0 0.00062 2.1E-08 62.7 5.0 45 160-206 26-73 (447)
50 1sxj_E Activator 1 40 kDa subu 97.0 0.00039 1.3E-08 61.3 3.5 44 160-205 14-58 (354)
51 1zp6_A Hypothetical protein AT 96.9 0.00046 1.6E-08 55.2 3.1 24 183-206 9-32 (191)
52 3pxi_A Negative regulator of g 96.9 0.0009 3.1E-08 65.5 5.7 45 160-206 180-224 (758)
53 2x8a_A Nuclear valosin-contain 96.9 0.00097 3.3E-08 57.2 5.2 46 160-206 10-67 (274)
54 1ixz_A ATP-dependent metallopr 96.9 0.00075 2.6E-08 56.8 4.4 46 160-206 16-72 (254)
55 4fcw_A Chaperone protein CLPB; 96.9 0.00069 2.4E-08 58.5 4.1 47 160-206 17-70 (311)
56 1ojl_A Transcriptional regulat 96.9 0.00067 2.3E-08 59.1 3.9 47 160-206 2-48 (304)
57 2r62_A Cell division protease 96.8 0.00043 1.5E-08 58.7 2.4 47 160-206 11-67 (268)
58 1qvr_A CLPB protein; coiled co 96.8 0.00073 2.5E-08 67.1 4.4 46 159-206 169-214 (854)
59 1sxj_C Activator 1 40 kDa subu 96.8 0.0011 3.7E-08 58.5 4.9 45 160-206 25-69 (340)
60 3kb2_A SPBC2 prophage-derived 96.8 0.00061 2.1E-08 53.3 3.0 23 184-206 2-24 (173)
61 1kgd_A CASK, peripheral plasma 96.8 0.00061 2.1E-08 54.5 3.0 24 183-206 5-28 (180)
62 1iy2_A ATP-dependent metallopr 96.8 0.001 3.5E-08 56.8 4.5 48 158-206 38-96 (278)
63 1ly1_A Polynucleotide kinase; 96.8 0.00078 2.7E-08 53.1 3.4 22 184-205 3-24 (181)
64 1d2n_A N-ethylmaleimide-sensit 96.8 0.002 6.7E-08 54.8 6.1 47 160-206 33-87 (272)
65 1l8q_A Chromosomal replication 96.8 0.0013 4.5E-08 57.4 5.0 38 169-206 23-60 (324)
66 3u61_B DNA polymerase accessor 96.8 0.0015 5.2E-08 56.9 5.4 46 160-206 26-71 (324)
67 1kag_A SKI, shikimate kinase I 96.8 0.0006 2E-08 53.7 2.5 23 184-206 5-27 (173)
68 3tr0_A Guanylate kinase, GMP k 96.8 0.00073 2.5E-08 54.6 3.1 24 183-206 7-30 (205)
69 2zan_A Vacuolar protein sortin 96.7 0.0013 4.4E-08 60.5 5.1 47 160-206 134-190 (444)
70 3vfd_A Spastin; ATPase, microt 96.7 0.0011 3.7E-08 59.6 4.6 47 160-206 115-171 (389)
71 2qp9_X Vacuolar protein sortin 96.7 0.0011 3.6E-08 59.1 4.4 47 160-206 51-107 (355)
72 4gp7_A Metallophosphoesterase; 96.7 0.00078 2.7E-08 53.5 3.1 23 183-205 9-31 (171)
73 3hws_A ATP-dependent CLP prote 96.7 0.0013 4.4E-08 58.5 4.9 46 161-206 16-74 (363)
74 1r6b_X CLPA protein; AAA+, N-t 96.7 0.0014 4.7E-08 64.1 5.5 77 160-238 186-276 (758)
75 3vaa_A Shikimate kinase, SK; s 96.7 0.00071 2.4E-08 54.9 2.9 24 183-206 25-48 (199)
76 2c9o_A RUVB-like 1; hexameric 96.7 0.0018 6.2E-08 59.6 5.7 47 160-206 37-86 (456)
77 3asz_A Uridine kinase; cytidin 96.7 0.00093 3.2E-08 54.4 3.4 25 182-206 5-29 (211)
78 2bdt_A BH3686; alpha-beta prot 96.7 0.00093 3.2E-08 53.5 3.3 22 184-205 3-24 (189)
79 1knq_A Gluconate kinase; ALFA/ 96.7 0.00099 3.4E-08 52.6 3.4 24 183-206 8-31 (175)
80 3uie_A Adenylyl-sulfate kinase 96.7 0.0011 3.6E-08 53.9 3.5 25 182-206 24-48 (200)
81 1qhx_A CPT, protein (chloramph 96.7 0.00089 3E-08 52.9 3.0 23 184-206 4-26 (178)
82 1ye8_A Protein THEP1, hypothet 96.7 0.00097 3.3E-08 53.5 3.1 22 185-206 2-23 (178)
83 4b4t_K 26S protease regulatory 96.6 0.0018 6.1E-08 59.2 5.1 47 160-206 172-229 (428)
84 1nks_A Adenylate kinase; therm 96.6 0.0011 3.7E-08 52.9 3.2 23 184-206 2-24 (194)
85 2hf9_A Probable hydrogenase ni 96.6 0.0023 8E-08 52.4 5.3 37 168-206 25-61 (226)
86 2j41_A Guanylate kinase; GMP, 96.6 0.0011 3.7E-08 53.6 3.1 24 183-206 6-29 (207)
87 2kjq_A DNAA-related protein; s 96.6 0.001 3.5E-08 51.7 2.9 26 182-207 35-60 (149)
88 2qt1_A Nicotinamide riboside k 96.6 0.0013 4.4E-08 53.5 3.6 25 182-206 20-44 (207)
89 3a00_A Guanylate kinase, GMP k 96.6 0.00085 2.9E-08 53.9 2.4 23 184-206 2-24 (186)
90 1cke_A CK, MSSA, protein (cyti 96.6 0.0011 3.8E-08 54.5 3.1 22 184-205 6-27 (227)
91 4eun_A Thermoresistant glucoki 96.6 0.0011 3.8E-08 53.7 3.1 25 182-206 28-52 (200)
92 2if2_A Dephospho-COA kinase; a 96.6 0.0011 3.7E-08 53.7 3.0 22 184-205 2-23 (204)
93 2jaq_A Deoxyguanosine kinase; 96.6 0.0011 3.9E-08 53.3 3.1 22 185-206 2-23 (205)
94 1uf9_A TT1252 protein; P-loop, 96.6 0.0013 4.4E-08 53.0 3.4 25 181-205 6-30 (203)
95 2rhm_A Putative kinase; P-loop 96.6 0.0014 4.8E-08 52.3 3.5 24 183-206 5-28 (193)
96 3trf_A Shikimate kinase, SK; a 96.6 0.0011 3.9E-08 52.7 2.9 24 183-206 5-28 (185)
97 2ga8_A Hypothetical 39.9 kDa p 96.5 0.003 1E-07 56.3 5.8 44 163-206 2-47 (359)
98 1jjv_A Dephospho-COA kinase; P 96.5 0.0013 4.5E-08 53.4 3.3 22 184-205 3-24 (206)
99 1kht_A Adenylate kinase; phosp 96.5 0.0013 4.4E-08 52.4 3.1 23 184-206 4-26 (192)
100 4b4t_M 26S protease regulatory 96.5 0.0021 7.1E-08 58.9 4.8 47 160-206 181-238 (434)
101 4b4t_L 26S protease subunit RP 96.5 0.0023 7.9E-08 58.6 5.1 47 160-206 181-238 (437)
102 3t61_A Gluconokinase; PSI-biol 96.5 0.001 3.5E-08 53.9 2.6 24 183-206 18-41 (202)
103 3hu3_A Transitional endoplasmi 96.5 0.0021 7.1E-08 59.9 4.8 47 160-206 204-261 (489)
104 3tau_A Guanylate kinase, GMP k 96.5 0.0014 4.9E-08 53.6 3.3 24 183-206 8-31 (208)
105 1lvg_A Guanylate kinase, GMP k 96.5 0.0011 3.6E-08 54.0 2.4 23 183-205 4-26 (198)
106 2wsm_A Hydrogenase expression/ 96.5 0.0022 7.4E-08 52.4 4.3 43 162-206 11-53 (221)
107 1tev_A UMP-CMP kinase; ploop, 96.5 0.0016 5.4E-08 52.0 3.4 24 183-206 3-26 (196)
108 1zuh_A Shikimate kinase; alpha 96.5 0.0014 4.8E-08 51.4 2.9 25 182-206 6-30 (168)
109 1znw_A Guanylate kinase, GMP k 96.5 0.0014 4.9E-08 53.4 3.1 24 183-206 20-43 (207)
110 3aez_A Pantothenate kinase; tr 96.5 0.0017 5.7E-08 57.0 3.6 26 181-206 88-113 (312)
111 1ukz_A Uridylate kinase; trans 96.5 0.0018 6.3E-08 52.3 3.7 25 182-206 14-38 (203)
112 2bbw_A Adenylate kinase 4, AK4 96.5 0.0014 4.9E-08 54.9 3.0 23 183-205 27-49 (246)
113 3fwy_A Light-independent proto 96.5 0.0016 5.4E-08 57.2 3.4 24 182-205 47-70 (314)
114 3p32_A Probable GTPase RV1496/ 96.5 0.0034 1.2E-07 55.8 5.6 37 169-205 65-101 (355)
115 1uj2_A Uridine-cytidine kinase 96.4 0.0018 6.1E-08 54.6 3.5 26 181-206 20-45 (252)
116 4b4t_J 26S protease regulatory 96.4 0.0021 7.3E-08 58.2 4.2 47 160-206 148-205 (405)
117 2ce7_A Cell division protein F 96.4 0.0033 1.1E-07 58.3 5.5 47 160-206 16-72 (476)
118 2r44_A Uncharacterized protein 96.4 0.002 6.9E-08 56.3 3.9 42 160-205 27-68 (331)
119 3tqc_A Pantothenate kinase; bi 96.4 0.0034 1.2E-07 55.2 5.3 25 181-205 90-114 (321)
120 3e70_C DPA, signal recognition 96.4 0.0028 9.6E-08 55.9 4.8 26 181-206 127-152 (328)
121 3iij_A Coilin-interacting nucl 96.4 0.0014 4.8E-08 52.0 2.6 24 183-206 11-34 (180)
122 2jeo_A Uridine-cytidine kinase 96.4 0.002 6.8E-08 54.1 3.6 25 182-206 24-48 (245)
123 2yvu_A Probable adenylyl-sulfa 96.4 0.0019 6.4E-08 51.6 3.4 25 182-206 12-36 (186)
124 1ypw_A Transitional endoplasmi 96.4 0.0018 6.1E-08 63.9 3.8 47 160-206 204-261 (806)
125 2qor_A Guanylate kinase; phosp 96.4 0.0013 4.5E-08 53.5 2.4 24 183-206 12-35 (204)
126 2c95_A Adenylate kinase 1; tra 96.4 0.0017 6E-08 51.9 3.1 24 183-206 9-32 (196)
127 1um8_A ATP-dependent CLP prote 96.4 0.003 1E-07 56.3 5.0 47 160-206 21-95 (376)
128 3tlx_A Adenylate kinase 2; str 96.4 0.0036 1.2E-07 52.6 5.1 40 167-206 13-52 (243)
129 1htw_A HI0065; nucleotide-bind 96.4 0.0021 7.2E-08 50.6 3.4 25 182-206 32-56 (158)
130 3cm0_A Adenylate kinase; ATP-b 96.4 0.002 6.9E-08 51.2 3.3 23 183-205 4-26 (186)
131 1via_A Shikimate kinase; struc 96.4 0.0014 4.8E-08 51.8 2.3 22 185-206 6-27 (175)
132 1y63_A LMAJ004144AAA protein; 96.4 0.002 7E-08 51.5 3.3 25 182-206 9-33 (184)
133 1gvn_B Zeta; postsegregational 96.4 0.0045 1.5E-07 53.4 5.7 39 168-206 15-56 (287)
134 1n0w_A DNA repair protein RAD5 96.3 0.0079 2.7E-07 49.6 7.0 55 182-237 23-83 (243)
135 2ze6_A Isopentenyl transferase 96.3 0.002 6.7E-08 54.6 3.3 23 184-206 2-24 (253)
136 1z6g_A Guanylate kinase; struc 96.3 0.0014 4.9E-08 54.1 2.4 24 183-206 23-46 (218)
137 2p5t_B PEZT; postsegregational 96.3 0.0035 1.2E-07 52.9 4.8 41 166-206 12-55 (253)
138 1g8p_A Magnesium-chelatase 38 96.3 0.0023 7.8E-08 56.1 3.8 45 160-206 24-68 (350)
139 1qf9_A UMP/CMP kinase, protein 96.3 0.0021 7.3E-08 51.1 3.3 24 183-206 6-29 (194)
140 4b4t_H 26S protease regulatory 96.3 0.003 1E-07 58.1 4.6 47 160-206 209-266 (467)
141 2plr_A DTMP kinase, probable t 96.3 0.0022 7.5E-08 51.9 3.4 24 183-206 4-27 (213)
142 2iyv_A Shikimate kinase, SK; t 96.3 0.0014 4.8E-08 52.1 2.1 23 184-206 3-25 (184)
143 4e22_A Cytidylate kinase; P-lo 96.3 0.0019 6.6E-08 54.6 3.0 22 183-204 27-48 (252)
144 2cvh_A DNA repair and recombin 96.3 0.0053 1.8E-07 49.9 5.7 43 182-229 19-63 (220)
145 2bwj_A Adenylate kinase 5; pho 96.3 0.0019 6.5E-08 51.8 2.9 24 183-206 12-35 (199)
146 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0024 8.1E-08 54.2 3.5 24 183-206 4-27 (260)
147 2pbr_A DTMP kinase, thymidylat 96.3 0.0022 7.5E-08 51.1 3.1 22 185-206 2-23 (195)
148 1rj9_A FTSY, signal recognitio 96.3 0.0023 7.8E-08 55.9 3.4 25 182-206 101-125 (304)
149 3nbx_X ATPase RAVA; AAA+ ATPas 96.3 0.0053 1.8E-07 57.3 6.1 43 160-206 22-64 (500)
150 1xjc_A MOBB protein homolog; s 96.3 0.0023 7.7E-08 51.1 3.0 25 182-206 3-27 (169)
151 4a74_A DNA repair and recombin 96.3 0.0024 8.1E-08 52.4 3.2 39 182-220 24-66 (231)
152 1e6c_A Shikimate kinase; phosp 96.2 0.0019 6.4E-08 50.7 2.4 23 184-206 3-25 (173)
153 2pt5_A Shikimate kinase, SK; a 96.2 0.0025 8.5E-08 49.8 3.1 22 185-206 2-23 (168)
154 2ehv_A Hypothetical protein PH 96.2 0.0024 8E-08 53.1 3.1 24 182-205 29-52 (251)
155 2onk_A Molybdate/tungstate ABC 96.2 0.0024 8.2E-08 53.8 3.2 24 181-205 23-46 (240)
156 2i3b_A HCR-ntpase, human cance 96.2 0.002 6.7E-08 52.3 2.5 22 185-206 3-24 (189)
157 2vli_A Antibiotic resistance p 96.2 0.0019 6.5E-08 51.1 2.4 24 183-206 5-28 (183)
158 3tif_A Uncharacterized ABC tra 96.2 0.0024 8.2E-08 53.5 3.1 23 183-205 31-53 (235)
159 2grj_A Dephospho-COA kinase; T 96.2 0.0027 9.4E-08 51.6 3.3 26 181-206 10-35 (192)
160 2cdn_A Adenylate kinase; phosp 96.2 0.0026 8.9E-08 51.4 3.1 25 182-206 19-43 (201)
161 3b85_A Phosphate starvation-in 96.2 0.0025 8.5E-08 52.5 3.0 23 184-206 23-45 (208)
162 1sq5_A Pantothenate kinase; P- 96.2 0.0057 1.9E-07 53.3 5.5 26 181-206 78-103 (308)
163 1zu4_A FTSY; GTPase, signal re 96.2 0.0054 1.8E-07 53.9 5.4 25 182-206 104-128 (320)
164 2pcj_A ABC transporter, lipopr 96.2 0.0024 8.1E-08 53.1 2.9 23 183-205 30-52 (224)
165 2z4s_A Chromosomal replication 96.2 0.0043 1.5E-07 56.9 4.9 24 183-206 130-153 (440)
166 1s96_A Guanylate kinase, GMP k 96.2 0.0025 8.7E-08 52.8 3.0 25 182-206 15-39 (219)
167 3b9q_A Chloroplast SRP recepto 96.1 0.0031 1.1E-07 54.9 3.6 25 182-206 99-123 (302)
168 3m6a_A ATP-dependent protease 96.1 0.0053 1.8E-07 57.8 5.4 47 160-206 81-131 (543)
169 2f6r_A COA synthase, bifunctio 96.1 0.0029 1E-07 54.4 3.4 24 182-205 74-97 (281)
170 1nn5_A Similar to deoxythymidy 96.1 0.003 1E-07 51.3 3.2 24 183-206 9-32 (215)
171 2z0h_A DTMP kinase, thymidylat 96.1 0.003 1E-07 50.5 3.2 22 185-206 2-23 (197)
172 3ney_A 55 kDa erythrocyte memb 96.1 0.0028 9.6E-08 51.8 3.0 25 182-206 18-42 (197)
173 1vht_A Dephospho-COA kinase; s 96.1 0.0034 1.1E-07 51.4 3.5 23 183-205 4-26 (218)
174 2dhr_A FTSH; AAA+ protein, hex 96.1 0.0038 1.3E-07 58.2 4.3 48 159-206 30-87 (499)
175 3lnc_A Guanylate kinase, GMP k 96.1 0.0018 6E-08 53.7 1.8 22 183-204 27-48 (231)
176 2pez_A Bifunctional 3'-phospho 96.1 0.0035 1.2E-07 49.6 3.5 24 183-206 5-28 (179)
177 3t15_A Ribulose bisphosphate c 96.1 0.0028 9.5E-08 54.8 3.0 25 182-206 35-59 (293)
178 2cbz_A Multidrug resistance-as 96.1 0.0029 1E-07 53.1 3.1 24 183-206 31-54 (237)
179 2wwf_A Thymidilate kinase, put 96.1 0.0028 9.7E-08 51.4 2.9 24 183-206 10-33 (212)
180 1b0u_A Histidine permease; ABC 96.1 0.0029 9.9E-08 53.9 3.1 23 183-205 32-54 (262)
181 1ji0_A ABC transporter; ATP bi 96.1 0.003 1E-07 53.1 3.1 24 183-206 32-55 (240)
182 1gtv_A TMK, thymidylate kinase 96.1 0.0013 4.3E-08 53.6 0.7 22 185-206 2-23 (214)
183 2yhs_A FTSY, cell division pro 96.1 0.0057 1.9E-07 56.9 5.1 25 182-206 292-316 (503)
184 1g6h_A High-affinity branched- 96.1 0.0031 1.1E-07 53.6 3.1 23 183-205 33-55 (257)
185 1m7g_A Adenylylsulfate kinase; 96.0 0.0041 1.4E-07 50.7 3.7 24 183-206 25-48 (211)
186 3gfo_A Cobalt import ATP-bindi 96.0 0.0032 1.1E-07 54.2 3.1 23 183-205 34-56 (275)
187 1mv5_A LMRA, multidrug resista 96.0 0.0035 1.2E-07 52.7 3.3 23 183-205 28-50 (243)
188 4b4t_I 26S protease regulatory 96.0 0.0062 2.1E-07 55.6 5.0 47 160-206 182-239 (437)
189 2d2e_A SUFC protein; ABC-ATPas 96.0 0.0034 1.2E-07 53.1 3.1 22 184-205 30-51 (250)
190 2pze_A Cystic fibrosis transme 96.0 0.0033 1.1E-07 52.4 3.1 24 183-206 34-57 (229)
191 2olj_A Amino acid ABC transpor 96.0 0.0034 1.2E-07 53.6 3.1 23 183-205 50-72 (263)
192 2v54_A DTMP kinase, thymidylat 96.0 0.0036 1.2E-07 50.4 3.0 24 183-206 4-27 (204)
193 2px0_A Flagellar biosynthesis 96.0 0.0033 1.1E-07 54.6 2.9 25 182-206 104-128 (296)
194 1sgw_A Putative ABC transporte 96.0 0.003 1E-07 52.3 2.5 23 184-206 36-58 (214)
195 1ex7_A Guanylate kinase; subst 96.0 0.0031 1E-07 51.1 2.5 22 185-206 3-24 (186)
196 2ff7_A Alpha-hemolysin translo 96.0 0.0036 1.2E-07 52.8 3.1 23 183-205 35-57 (247)
197 1aky_A Adenylate kinase; ATP:A 96.0 0.0039 1.3E-07 51.2 3.2 24 183-206 4-27 (220)
198 2zu0_C Probable ATP-dependent 96.0 0.0037 1.3E-07 53.4 3.1 24 183-206 46-69 (267)
199 3ake_A Cytidylate kinase; CMP 95.9 0.0039 1.3E-07 50.3 3.1 21 185-205 4-24 (208)
200 1vpl_A ABC transporter, ATP-bi 95.9 0.0037 1.3E-07 53.1 3.1 23 183-205 41-63 (256)
201 3umf_A Adenylate kinase; rossm 95.9 0.0047 1.6E-07 51.2 3.6 26 181-206 27-52 (217)
202 4g1u_C Hemin import ATP-bindin 95.9 0.0037 1.3E-07 53.4 3.0 23 183-205 37-59 (266)
203 3fb4_A Adenylate kinase; psych 95.9 0.0039 1.3E-07 50.9 3.1 22 185-206 2-23 (216)
204 2ixe_A Antigen peptide transpo 95.9 0.0038 1.3E-07 53.5 3.1 23 183-205 45-67 (271)
205 2f1r_A Molybdopterin-guanine d 95.9 0.0017 5.9E-08 51.8 0.8 24 183-206 2-25 (171)
206 1zd8_A GTP:AMP phosphotransfer 95.9 0.0039 1.3E-07 51.5 3.0 24 183-206 7-30 (227)
207 1cr0_A DNA primase/helicase; R 95.9 0.012 4.2E-07 50.5 6.3 52 183-236 35-87 (296)
208 2ghi_A Transport protein; mult 95.9 0.0039 1.3E-07 53.1 3.1 24 183-206 46-69 (260)
209 1oix_A RAS-related protein RAB 95.9 0.004 1.4E-07 49.8 3.0 24 183-206 29-52 (191)
210 2og2_A Putative signal recogni 95.9 0.0046 1.6E-07 55.3 3.6 25 182-206 156-180 (359)
211 2yz2_A Putative ABC transporte 95.9 0.004 1.4E-07 53.1 3.1 23 183-205 33-55 (266)
212 1np6_A Molybdopterin-guanine d 95.9 0.0043 1.5E-07 49.6 3.0 25 182-206 5-29 (174)
213 2qi9_C Vitamin B12 import ATP- 95.9 0.0042 1.4E-07 52.6 3.1 23 184-206 27-49 (249)
214 1vma_A Cell division protein F 95.9 0.0048 1.6E-07 53.9 3.5 25 182-206 103-127 (306)
215 3dl0_A Adenylate kinase; phosp 95.9 0.0044 1.5E-07 50.6 3.1 22 185-206 2-23 (216)
216 2ihy_A ABC transporter, ATP-bi 95.9 0.0042 1.4E-07 53.5 3.1 24 183-206 47-70 (279)
217 1g41_A Heat shock protein HSLU 95.9 0.0076 2.6E-07 55.3 4.9 47 160-206 15-73 (444)
218 2f9l_A RAB11B, member RAS onco 95.9 0.0043 1.5E-07 49.9 2.9 24 183-206 5-28 (199)
219 2nq2_C Hypothetical ABC transp 95.9 0.0042 1.4E-07 52.6 3.0 23 184-206 32-54 (253)
220 2zej_A Dardarin, leucine-rich 95.8 0.0044 1.5E-07 49.2 2.8 21 185-205 4-24 (184)
221 3bh0_A DNAB-like replicative h 95.8 0.02 6.9E-07 49.9 7.3 52 182-235 67-118 (315)
222 1svm_A Large T antigen; AAA+ f 95.8 0.01 3.6E-07 53.3 5.5 26 181-206 167-192 (377)
223 3nwj_A ATSK2; P loop, shikimat 95.8 0.0036 1.2E-07 53.0 2.3 22 184-205 49-70 (250)
224 2wji_A Ferrous iron transport 95.8 0.0062 2.1E-07 47.3 3.6 23 184-206 4-26 (165)
225 1zak_A Adenylate kinase; ATP:A 95.8 0.0041 1.4E-07 51.1 2.6 24 183-206 5-28 (222)
226 2qgz_A Helicase loader, putati 95.8 0.0098 3.3E-07 51.8 5.1 39 168-206 136-175 (308)
227 2eyu_A Twitching motility prot 95.8 0.0056 1.9E-07 52.1 3.4 24 182-205 24-47 (261)
228 1yrb_A ATP(GTP)binding protein 95.8 0.0056 1.9E-07 51.3 3.4 24 182-205 13-36 (262)
229 2dyk_A GTP-binding protein; GT 95.8 0.0064 2.2E-07 46.4 3.5 24 184-207 2-25 (161)
230 3cf2_A TER ATPase, transitiona 95.7 0.0074 2.5E-07 59.3 4.6 74 160-238 204-295 (806)
231 2xxa_A Signal recognition part 95.7 0.009 3.1E-07 54.7 4.9 40 167-206 77-123 (433)
232 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.0052 1.8E-07 50.2 3.0 48 183-232 23-70 (235)
233 1pzn_A RAD51, DNA repair and r 95.7 0.014 4.8E-07 51.8 6.0 55 181-236 129-189 (349)
234 3sop_A Neuronal-specific septi 95.7 0.005 1.7E-07 52.7 3.0 22 185-206 4-25 (270)
235 2ce2_X GTPase HRAS; signaling 95.7 0.0052 1.8E-07 46.9 2.9 22 185-206 5-26 (166)
236 2wjg_A FEOB, ferrous iron tran 95.7 0.0073 2.5E-07 47.6 3.7 24 183-206 7-30 (188)
237 1fzq_A ADP-ribosylation factor 95.7 0.0074 2.5E-07 47.7 3.7 26 181-206 14-39 (181)
238 2vp4_A Deoxynucleoside kinase; 95.7 0.0054 1.9E-07 50.9 3.0 26 181-206 18-43 (230)
239 1v5w_A DMC1, meiotic recombina 95.7 0.038 1.3E-06 48.7 8.6 57 181-238 120-182 (343)
240 1z2a_A RAS-related protein RAB 95.7 0.0058 2E-07 47.0 2.9 24 183-206 5-28 (168)
241 3r20_A Cytidylate kinase; stru 95.7 0.0057 2E-07 51.3 3.0 24 183-206 9-32 (233)
242 2pjz_A Hypothetical protein ST 95.6 0.0059 2E-07 52.1 3.1 22 184-205 31-52 (263)
243 3kl4_A SRP54, signal recogniti 95.6 0.0094 3.2E-07 54.5 4.5 25 182-206 96-120 (433)
244 2v3c_C SRP54, signal recogniti 95.6 0.0076 2.6E-07 55.2 3.9 24 183-206 99-122 (432)
245 1u8z_A RAS-related protein RAL 95.6 0.0065 2.2E-07 46.5 3.0 24 184-207 5-28 (168)
246 3be4_A Adenylate kinase; malar 95.6 0.0053 1.8E-07 50.4 2.6 23 184-206 6-28 (217)
247 2nzj_A GTP-binding protein REM 95.6 0.0062 2.1E-07 47.2 2.9 24 183-206 4-27 (175)
248 1q3t_A Cytidylate kinase; nucl 95.6 0.0069 2.3E-07 50.4 3.2 25 181-205 14-38 (236)
249 3con_A GTPase NRAS; structural 95.6 0.0066 2.3E-07 48.0 3.0 24 184-207 22-45 (190)
250 1j8m_F SRP54, signal recogniti 95.6 0.013 4.4E-07 50.9 5.1 24 183-206 98-121 (297)
251 3lda_A DNA repair protein RAD5 95.6 0.026 9E-07 51.0 7.2 56 182-238 177-238 (400)
252 3pxi_A Negative regulator of g 95.6 0.011 3.8E-07 57.7 5.1 47 160-206 491-544 (758)
253 2xb4_A Adenylate kinase; ATP-b 95.6 0.0068 2.3E-07 50.0 3.1 22 185-206 2-23 (223)
254 1nij_A Hypothetical protein YJ 95.6 0.0072 2.5E-07 52.9 3.4 25 182-206 3-27 (318)
255 1tq4_A IIGP1, interferon-induc 95.6 0.0076 2.6E-07 54.8 3.7 25 181-205 67-91 (413)
256 1c1y_A RAS-related protein RAP 95.6 0.0082 2.8E-07 46.0 3.4 22 185-206 5-26 (167)
257 1e4v_A Adenylate kinase; trans 95.6 0.0067 2.3E-07 49.5 3.0 22 185-206 2-23 (214)
258 1a7j_A Phosphoribulokinase; tr 95.6 0.0045 1.5E-07 53.5 2.0 24 182-205 4-27 (290)
259 2v9p_A Replication protein E1; 95.5 0.0066 2.3E-07 53.0 3.1 24 182-205 125-148 (305)
260 3k1j_A LON protease, ATP-depen 95.5 0.011 3.6E-07 56.4 4.8 43 160-206 41-83 (604)
261 3d3q_A TRNA delta(2)-isopenten 95.5 0.0074 2.5E-07 53.5 3.4 23 184-206 8-30 (340)
262 1z08_A RAS-related protein RAB 95.5 0.0091 3.1E-07 46.0 3.6 24 183-206 6-29 (170)
263 3t1o_A Gliding protein MGLA; G 95.5 0.0069 2.4E-07 47.9 2.9 24 183-206 14-37 (198)
264 2lkc_A Translation initiation 95.5 0.012 3.9E-07 45.8 4.1 25 182-206 7-31 (178)
265 1ltq_A Polynucleotide kinase; 95.5 0.0079 2.7E-07 51.7 3.4 22 184-205 3-24 (301)
266 2bbs_A Cystic fibrosis transme 95.5 0.0068 2.3E-07 52.5 2.9 24 183-206 64-87 (290)
267 2ged_A SR-beta, signal recogni 95.5 0.0074 2.5E-07 47.9 3.0 26 182-207 47-72 (193)
268 1z0j_A RAB-22, RAS-related pro 95.5 0.0078 2.7E-07 46.3 3.0 24 184-207 7-30 (170)
269 2erx_A GTP-binding protein DI- 95.5 0.0078 2.7E-07 46.3 2.9 23 184-206 4-26 (172)
270 1ek0_A Protein (GTP-binding pr 95.5 0.008 2.7E-07 46.2 3.0 23 185-207 5-27 (170)
271 1kao_A RAP2A; GTP-binding prot 95.4 0.0082 2.8E-07 45.9 3.0 23 184-206 4-26 (167)
272 2p67_A LAO/AO transport system 95.4 0.017 5.9E-07 50.9 5.4 25 181-205 54-78 (341)
273 3q72_A GTP-binding protein RAD 95.4 0.0069 2.4E-07 46.6 2.5 22 185-206 4-25 (166)
274 1ky3_A GTP-binding protein YPT 95.4 0.0082 2.8E-07 46.7 3.0 25 182-206 7-31 (182)
275 1ls1_A Signal recognition part 95.4 0.0087 3E-07 51.9 3.3 25 182-206 97-121 (295)
276 3end_A Light-independent proto 95.4 0.0092 3.1E-07 51.5 3.4 26 181-206 39-64 (307)
277 2j37_W Signal recognition part 95.4 0.014 4.7E-07 54.5 4.8 24 182-205 100-123 (504)
278 2gj8_A MNME, tRNA modification 95.4 0.0082 2.8E-07 47.1 2.8 23 184-206 5-27 (172)
279 2qm8_A GTPase/ATPase; G protei 95.4 0.016 5.4E-07 51.2 5.0 25 181-205 53-77 (337)
280 3tw8_B RAS-related protein RAB 95.4 0.0079 2.7E-07 46.8 2.7 25 182-206 8-32 (181)
281 1ak2_A Adenylate kinase isoenz 95.4 0.0089 3E-07 49.6 3.1 24 183-206 16-39 (233)
282 1r8s_A ADP-ribosylation factor 95.3 0.0089 3E-07 45.8 2.9 21 186-206 3-23 (164)
283 2fn4_A P23, RAS-related protei 95.3 0.0099 3.4E-07 46.2 3.2 25 182-206 8-32 (181)
284 3kkq_A RAS-related protein M-R 95.3 0.011 3.6E-07 46.4 3.4 25 182-206 17-41 (183)
285 3nh6_A ATP-binding cassette SU 95.3 0.0054 1.9E-07 53.5 1.8 23 183-205 80-102 (306)
286 1wms_A RAB-9, RAB9, RAS-relate 95.3 0.0092 3.1E-07 46.4 3.0 24 183-206 7-30 (177)
287 1nlf_A Regulatory protein REPA 95.3 0.0087 3E-07 51.1 3.0 24 183-206 30-53 (279)
288 4dsu_A GTPase KRAS, isoform 2B 95.3 0.011 3.7E-07 46.5 3.4 24 184-207 5-28 (189)
289 1m7b_A RND3/RHOE small GTP-bin 95.3 0.0087 3E-07 47.2 2.8 24 183-206 7-30 (184)
290 1r2q_A RAS-related protein RAB 95.3 0.0095 3.3E-07 45.7 3.0 23 184-206 7-29 (170)
291 2hxs_A RAB-26, RAS-related pro 95.3 0.01 3.5E-07 46.1 3.2 24 183-206 6-29 (178)
292 1z0f_A RAB14, member RAS oncog 95.3 0.0095 3.2E-07 46.2 3.0 26 182-207 14-39 (179)
293 3fvq_A Fe(3+) IONS import ATP- 95.3 0.0086 2.9E-07 53.4 3.0 23 183-205 30-52 (359)
294 1g16_A RAS-related protein SEC 95.3 0.0092 3.1E-07 45.9 2.9 23 184-206 4-26 (170)
295 2i1q_A DNA repair and recombin 95.3 0.032 1.1E-06 48.5 6.7 56 182-238 97-168 (322)
296 3tui_C Methionine import ATP-b 95.3 0.0092 3.1E-07 53.4 3.1 23 183-205 54-76 (366)
297 1h65_A Chloroplast outer envel 95.3 0.026 8.9E-07 47.8 5.9 37 171-207 27-63 (270)
298 2dr3_A UPF0273 protein PH0284; 95.3 0.023 7.7E-07 46.8 5.4 48 183-232 23-70 (247)
299 2www_A Methylmalonic aciduria 95.3 0.011 3.7E-07 52.5 3.6 25 181-205 72-96 (349)
300 1pui_A ENGB, probable GTP-bind 95.3 0.0053 1.8E-07 49.5 1.4 24 183-206 26-49 (210)
301 1upt_A ARL1, ADP-ribosylation 95.2 0.01 3.5E-07 45.8 3.0 24 183-206 7-30 (171)
302 2ocp_A DGK, deoxyguanosine kin 95.2 0.011 3.8E-07 49.2 3.4 24 183-206 2-25 (241)
303 3t5g_A GTP-binding protein RHE 95.2 0.011 3.8E-07 46.2 3.2 24 183-206 6-29 (181)
304 1z47_A CYSA, putative ABC-tran 95.2 0.0097 3.3E-07 53.0 3.1 23 183-205 41-63 (355)
305 1svi_A GTP-binding protein YSX 95.2 0.011 3.6E-07 46.9 3.1 26 182-207 22-47 (195)
306 3def_A T7I23.11 protein; chlor 95.2 0.027 9.3E-07 47.5 5.8 37 171-207 24-60 (262)
307 3pqc_A Probable GTP-binding pr 95.2 0.0098 3.3E-07 46.9 2.8 25 183-207 23-47 (195)
308 2a9k_A RAS-related protein RAL 95.2 0.012 4.2E-07 45.9 3.4 25 183-207 18-42 (187)
309 4eaq_A DTMP kinase, thymidylat 95.2 0.012 4E-07 49.0 3.3 27 182-208 25-51 (229)
310 3q85_A GTP-binding protein REM 95.2 0.014 4.7E-07 45.0 3.6 22 184-205 3-24 (169)
311 2bme_A RAB4A, RAS-related prot 95.2 0.01 3.5E-07 46.6 2.9 25 182-206 9-33 (186)
312 2qnr_A Septin-2, protein NEDD5 95.2 0.008 2.7E-07 52.2 2.4 23 183-206 19-41 (301)
313 2cxx_A Probable GTP-binding pr 95.2 0.0096 3.3E-07 46.9 2.7 23 185-207 3-25 (190)
314 3ihw_A Centg3; RAS, centaurin, 95.2 0.01 3.5E-07 47.1 2.9 24 183-206 20-43 (184)
315 1r6b_X CLPA protein; AAA+, N-t 95.2 0.027 9.3E-07 54.9 6.4 47 160-206 458-511 (758)
316 3c5c_A RAS-like protein 12; GD 95.2 0.011 3.7E-07 47.0 3.0 24 183-206 21-44 (187)
317 1cp2_A CP2, nitrogenase iron p 95.2 0.011 3.7E-07 49.9 3.1 23 184-206 2-24 (269)
318 2yyz_A Sugar ABC transporter, 95.1 0.011 3.6E-07 52.9 3.1 23 183-205 29-51 (359)
319 1mh1_A RAC1; GTP-binding, GTPa 95.1 0.011 3.8E-07 46.2 3.0 23 184-206 6-28 (186)
320 2oil_A CATX-8, RAS-related pro 95.1 0.011 3.8E-07 46.9 3.0 24 183-206 25-48 (193)
321 3bc1_A RAS-related protein RAB 95.1 0.011 3.9E-07 46.4 3.0 24 183-206 11-34 (195)
322 1m2o_B GTP-binding protein SAR 95.1 0.011 3.6E-07 47.2 2.9 22 184-205 24-45 (190)
323 2y8e_A RAB-protein 6, GH09086P 95.1 0.011 3.7E-07 45.9 2.9 23 184-206 15-37 (179)
324 1nrj_B SR-beta, signal recogni 95.1 0.013 4.4E-07 47.5 3.4 26 182-207 11-36 (218)
325 3bwd_D RAC-like GTP-binding pr 95.1 0.012 4E-07 46.0 3.0 23 184-206 9-31 (182)
326 3zvl_A Bifunctional polynucleo 95.1 0.012 4E-07 53.5 3.4 25 182-206 257-281 (416)
327 2it1_A 362AA long hypothetical 95.1 0.011 3.7E-07 52.9 3.1 23 183-205 29-51 (362)
328 3sr0_A Adenylate kinase; phosp 95.1 0.012 4E-07 48.3 3.1 22 185-206 2-23 (206)
329 3kta_A Chromosome segregation 95.1 0.012 4E-07 46.6 3.0 22 184-205 27-48 (182)
330 2z43_A DNA repair and recombin 95.1 0.034 1.1E-06 48.6 6.2 56 182-238 106-167 (324)
331 3rlf_A Maltose/maltodextrin im 95.1 0.011 3.6E-07 53.3 3.0 23 183-205 29-51 (381)
332 1f6b_A SAR1; gtpases, N-termin 95.1 0.0084 2.9E-07 48.2 2.2 22 184-205 26-47 (198)
333 2bov_A RAla, RAS-related prote 95.1 0.012 3.9E-07 47.1 3.0 26 182-207 13-38 (206)
334 1g29_1 MALK, maltose transport 95.1 0.011 3.8E-07 53.0 3.1 23 183-205 29-51 (372)
335 3crm_A TRNA delta(2)-isopenten 95.1 0.012 4.2E-07 51.6 3.3 23 184-206 6-28 (323)
336 2efe_B Small GTP-binding prote 95.1 0.012 4.1E-07 45.9 2.9 24 183-206 12-35 (181)
337 1vg8_A RAS-related protein RAB 95.1 0.012 4.1E-07 47.1 3.0 25 182-206 7-31 (207)
338 1tue_A Replication protein E1; 95.1 0.015 5.2E-07 47.8 3.6 37 169-206 45-81 (212)
339 1v43_A Sugar-binding transport 95.0 0.012 4E-07 52.8 3.1 23 183-205 37-59 (372)
340 3cbq_A GTP-binding protein REM 95.0 0.01 3.5E-07 47.6 2.5 23 182-204 22-44 (195)
341 2g6b_A RAS-related protein RAB 95.0 0.013 4.3E-07 45.7 3.0 24 183-206 10-33 (180)
342 1ega_A Protein (GTP-binding pr 95.0 0.013 4.4E-07 50.8 3.2 25 182-206 7-31 (301)
343 3clv_A RAB5 protein, putative; 95.0 0.013 4.3E-07 46.4 2.9 24 183-206 7-30 (208)
344 2atv_A RERG, RAS-like estrogen 95.0 0.013 4.3E-07 46.8 2.9 24 183-206 28-51 (196)
345 2fg5_A RAB-22B, RAS-related pr 95.0 0.012 4.2E-07 46.8 2.8 25 183-207 23-47 (192)
346 3tkl_A RAS-related protein RAB 95.0 0.017 5.6E-07 45.8 3.6 26 182-207 15-40 (196)
347 3llu_A RAS-related GTP-binding 95.0 0.012 4.1E-07 47.0 2.8 24 183-206 20-43 (196)
348 1zbd_A Rabphilin-3A; G protein 95.0 0.013 4.6E-07 46.8 3.0 25 183-207 8-32 (203)
349 1ksh_A ARF-like protein 2; sma 95.0 0.013 4.6E-07 46.0 3.0 26 182-207 17-42 (186)
350 2fh5_B SR-beta, signal recogni 95.0 0.015 5.2E-07 46.9 3.4 25 183-207 7-31 (214)
351 2iwr_A Centaurin gamma 1; ANK 95.0 0.0094 3.2E-07 46.5 2.0 23 184-206 8-30 (178)
352 1lw7_A Transcriptional regulat 94.9 0.011 3.9E-07 52.5 2.7 24 183-206 170-193 (365)
353 1p9r_A General secretion pathw 94.9 0.028 9.6E-07 51.2 5.3 42 163-206 149-190 (418)
354 2gf9_A RAS-related protein RAB 94.9 0.014 4.9E-07 46.1 3.0 25 183-207 22-46 (189)
355 2afh_E Nitrogenase iron protei 94.9 0.014 4.8E-07 49.9 3.1 24 183-206 2-25 (289)
356 3dz8_A RAS-related protein RAB 94.9 0.013 4.5E-07 46.5 2.8 25 183-207 23-47 (191)
357 2obl_A ESCN; ATPase, hydrolase 94.9 0.013 4.6E-07 51.9 3.0 25 183-207 71-95 (347)
358 3oes_A GTPase rhebl1; small GT 94.9 0.014 4.7E-07 46.8 2.9 26 182-207 23-48 (201)
359 1moz_A ARL1, ADP-ribosylation 94.9 0.0093 3.2E-07 46.7 1.8 24 182-205 17-40 (183)
360 1zd9_A ADP-ribosylation factor 94.9 0.015 5E-07 46.1 3.0 24 183-206 22-45 (188)
361 3reg_A RHO-like small GTPase; 94.9 0.015 5E-07 46.3 3.0 25 183-207 23-47 (194)
362 2ewv_A Twitching motility prot 94.9 0.015 5.1E-07 52.1 3.3 24 182-205 135-158 (372)
363 3hr8_A Protein RECA; alpha and 94.9 0.037 1.3E-06 49.3 5.8 38 181-220 59-96 (356)
364 3iev_A GTP-binding protein ERA 94.8 0.018 6.1E-07 50.1 3.7 27 181-207 8-34 (308)
365 2a5j_A RAS-related protein RAB 94.8 0.015 5.1E-07 46.1 3.0 24 183-206 21-44 (191)
366 2qu8_A Putative nucleolar GTP- 94.8 0.02 6.8E-07 47.0 3.8 25 182-206 28-52 (228)
367 1x3s_A RAS-related protein RAB 94.8 0.015 5.2E-07 45.9 3.0 24 183-206 15-38 (195)
368 1p5z_B DCK, deoxycytidine kina 94.8 0.012 4E-07 49.8 2.4 25 182-206 23-47 (263)
369 2q3h_A RAS homolog gene family 94.8 0.014 5E-07 46.5 2.9 24 183-206 20-43 (201)
370 2qag_B Septin-6, protein NEDD5 94.8 0.014 4.9E-07 53.2 3.1 21 186-206 45-65 (427)
371 1gwn_A RHO-related GTP-binding 94.8 0.014 4.8E-07 47.3 2.8 24 183-206 28-51 (205)
372 3exa_A TRNA delta(2)-isopenten 94.8 0.017 5.7E-07 50.6 3.3 24 183-206 3-26 (322)
373 1z06_A RAS-related protein RAB 94.8 0.016 5.3E-07 45.9 3.0 24 183-206 20-43 (189)
374 2vhj_A Ntpase P4, P4; non- hyd 94.8 0.017 5.8E-07 50.8 3.4 24 183-206 123-146 (331)
375 3d31_A Sulfate/molybdate ABC t 94.8 0.0097 3.3E-07 52.9 1.9 23 183-205 26-48 (348)
376 2p5s_A RAS and EF-hand domain 94.8 0.016 5.4E-07 46.4 3.0 24 183-206 28-51 (199)
377 4bas_A ADP-ribosylation factor 94.8 0.019 6.5E-07 45.5 3.4 26 182-207 16-41 (199)
378 3a8t_A Adenylate isopentenyltr 94.8 0.02 6.8E-07 50.6 3.8 25 182-206 39-63 (339)
379 2gf0_A GTP-binding protein DI- 94.8 0.015 5.1E-07 46.1 2.8 24 183-206 8-31 (199)
380 2h92_A Cytidylate kinase; ross 94.8 0.013 4.4E-07 47.8 2.5 22 184-205 4-25 (219)
381 2o52_A RAS-related protein RAB 94.8 0.015 5.1E-07 46.7 2.7 25 182-206 24-48 (200)
382 2b6h_A ADP-ribosylation factor 94.8 0.014 4.9E-07 46.5 2.6 24 183-206 29-52 (192)
383 2ew1_A RAS-related protein RAB 94.7 0.015 5.2E-07 47.0 2.8 25 182-206 25-49 (201)
384 2il1_A RAB12; G-protein, GDP, 94.7 0.015 5E-07 46.4 2.7 25 183-207 26-50 (192)
385 2cjw_A GTP-binding protein GEM 94.7 0.016 5.5E-07 46.3 2.9 23 183-205 6-28 (192)
386 3gd7_A Fusion complex of cysti 94.7 0.015 5.3E-07 52.4 3.0 23 183-205 47-69 (390)
387 1zj6_A ADP-ribosylation factor 94.7 0.017 5.7E-07 45.6 2.9 24 183-206 16-39 (187)
388 4gzl_A RAS-related C3 botulinu 94.7 0.022 7.5E-07 45.9 3.6 24 183-206 30-53 (204)
389 3k53_A Ferrous iron transport 94.7 0.019 6.4E-07 48.8 3.4 24 183-206 3-26 (271)
390 3dm5_A SRP54, signal recogniti 94.7 0.018 6.1E-07 52.8 3.4 25 182-206 99-123 (443)
391 2bcg_Y Protein YP2, GTP-bindin 94.7 0.016 5.6E-07 46.4 2.9 24 183-206 8-31 (206)
392 3jvv_A Twitching mobility prot 94.7 0.018 6.3E-07 51.2 3.4 23 183-205 123-145 (356)
393 1oxx_K GLCV, glucose, ABC tran 94.7 0.0086 3E-07 53.3 1.2 23 183-205 31-53 (353)
394 2gza_A Type IV secretion syste 94.6 0.013 4.4E-07 52.3 2.3 23 183-205 175-197 (361)
395 2fv8_A H6, RHO-related GTP-bin 94.6 0.017 5.7E-07 46.6 2.8 24 183-206 25-48 (207)
396 2h57_A ADP-ribosylation factor 94.6 0.015 5E-07 46.1 2.4 25 183-207 21-45 (190)
397 1qvr_A CLPB protein; coiled co 94.6 0.032 1.1E-06 55.3 5.4 47 160-206 558-611 (854)
398 3cph_A RAS-related protein SEC 94.6 0.018 6.3E-07 46.2 3.0 24 183-206 20-43 (213)
399 2j1l_A RHO-related GTP-binding 94.6 0.016 5.6E-07 47.0 2.7 24 183-206 34-57 (214)
400 3lxx_A GTPase IMAP family memb 94.6 0.024 8.1E-07 47.0 3.7 26 182-207 28-53 (239)
401 3foz_A TRNA delta(2)-isopenten 94.6 0.024 8.1E-07 49.6 3.8 25 182-206 9-33 (316)
402 2h17_A ADP-ribosylation factor 94.6 0.016 5.5E-07 45.5 2.5 24 183-206 21-44 (181)
403 2atx_A Small GTP binding prote 94.6 0.018 6.2E-07 45.6 2.8 24 183-206 18-41 (194)
404 2fu5_C RAS-related protein RAB 94.5 0.012 4E-07 46.1 1.6 24 183-206 8-31 (183)
405 2gco_A H9, RHO-related GTP-bin 94.5 0.019 6.5E-07 46.0 2.9 24 183-206 25-48 (201)
406 2pt7_A CAG-ALFA; ATPase, prote 94.5 0.015 5E-07 51.3 2.3 23 184-206 172-194 (330)
407 1mky_A Probable GTP-binding pr 94.5 0.047 1.6E-06 49.8 5.8 44 163-206 151-203 (439)
408 2npi_A Protein CLP1; CLP1-PCF1 94.5 0.015 5.1E-07 53.6 2.5 24 183-206 138-161 (460)
409 2hup_A RAS-related protein RAB 94.5 0.019 6.6E-07 46.1 2.8 25 182-206 28-52 (201)
410 2ffh_A Protein (FFH); SRP54, s 94.5 0.021 7.3E-07 52.0 3.4 25 182-206 97-121 (425)
411 1yqt_A RNAse L inhibitor; ATP- 94.5 0.019 6.5E-07 54.0 3.1 23 184-206 313-335 (538)
412 1wf3_A GTP-binding protein; GT 94.5 0.026 8.9E-07 48.9 3.8 25 182-206 6-30 (301)
413 2x77_A ADP-ribosylation factor 94.5 0.031 1.1E-06 44.0 3.9 24 182-205 21-44 (189)
414 2j0v_A RAC-like GTP-binding pr 94.4 0.02 6.9E-07 46.1 2.9 24 183-206 9-32 (212)
415 3ozx_A RNAse L inhibitor; ATP 94.4 0.019 6.6E-07 53.9 3.1 23 184-206 295-317 (538)
416 2f7s_A C25KG, RAS-related prot 94.4 0.021 7.2E-07 46.2 2.9 24 183-206 25-48 (217)
417 2yv5_A YJEQ protein; hydrolase 94.4 0.02 6.9E-07 49.6 2.9 31 169-204 156-186 (302)
418 3q3j_B RHO-related GTP-binding 94.4 0.025 8.7E-07 46.0 3.4 24 183-206 27-50 (214)
419 3ozx_A RNAse L inhibitor; ATP 94.4 0.022 7.4E-07 53.6 3.3 24 182-205 24-47 (538)
420 2qag_C Septin-7; cell cycle, c 94.4 0.02 6.7E-07 52.2 2.9 21 186-206 34-54 (418)
421 1u0j_A DNA replication protein 94.4 0.045 1.5E-06 46.7 4.9 37 170-206 91-127 (267)
422 2zts_A Putative uncharacterize 94.4 0.045 1.6E-06 45.0 4.9 51 182-233 29-79 (251)
423 2rcn_A Probable GTPase ENGC; Y 94.3 0.022 7.7E-07 50.7 3.1 23 184-206 216-238 (358)
424 4dzz_A Plasmid partitioning pr 94.3 0.023 7.8E-07 45.6 2.9 23 184-206 2-25 (206)
425 1yqt_A RNAse L inhibitor; ATP- 94.3 0.022 7.6E-07 53.5 3.1 23 183-205 47-69 (538)
426 2g3y_A GTP-binding protein GEM 94.2 0.024 8.2E-07 46.4 2.9 23 183-205 37-59 (211)
427 3euj_A Chromosome partition pr 94.2 0.024 8.4E-07 52.5 3.2 22 184-205 30-51 (483)
428 2dpy_A FLII, flagellum-specifi 94.2 0.023 8E-07 52.0 3.0 24 183-206 157-180 (438)
429 3gmt_A Adenylate kinase; ssgci 94.1 0.026 8.7E-07 47.2 2.9 24 183-206 8-31 (230)
430 3bk7_A ABC transporter ATP-bin 94.1 0.025 8.5E-07 54.0 3.1 23 184-206 383-405 (607)
431 3t5d_A Septin-7; GTP-binding p 94.1 0.022 7.6E-07 48.4 2.6 23 184-206 9-31 (274)
432 2xtp_A GTPase IMAP family memb 94.1 0.031 1.1E-06 46.8 3.5 26 182-207 21-46 (260)
433 3f9v_A Minichromosome maintena 94.1 0.018 6.1E-07 54.8 2.1 47 160-206 295-350 (595)
434 2zr9_A Protein RECA, recombina 94.1 0.038 1.3E-06 49.0 4.1 37 182-220 60-96 (349)
435 3io5_A Recombination and repai 94.1 0.099 3.4E-06 45.9 6.6 39 185-225 30-72 (333)
436 1u0l_A Probable GTPase ENGC; p 94.0 0.028 9.5E-07 48.7 3.1 33 169-206 160-192 (301)
437 2r6a_A DNAB helicase, replicat 94.0 0.08 2.7E-06 48.5 6.3 51 182-233 202-252 (454)
438 1ypw_A Transitional endoplasmi 94.0 0.013 4.5E-07 57.8 1.0 49 158-206 475-534 (806)
439 3eph_A TRNA isopentenyltransfe 94.0 0.029 9.9E-07 50.8 3.2 23 184-206 3-25 (409)
440 3qf4_B Uncharacterized ABC tra 94.0 0.046 1.6E-06 51.9 4.8 24 182-205 380-403 (598)
441 3ch4_B Pmkase, phosphomevalona 94.0 0.033 1.1E-06 45.6 3.2 24 182-205 10-33 (202)
442 3cpj_B GTP-binding protein YPT 94.0 0.029 1E-06 45.7 3.0 24 183-206 13-36 (223)
443 4hlc_A DTMP kinase, thymidylat 94.0 0.092 3.1E-06 42.8 5.9 24 184-207 3-26 (205)
444 3j16_B RLI1P; ribosome recycli 94.0 0.028 9.4E-07 53.7 3.1 23 184-206 379-401 (608)
445 2qag_A Septin-2, protein NEDD5 93.9 0.024 8.2E-07 50.5 2.5 22 185-206 39-60 (361)
446 3lv8_A DTMP kinase, thymidylat 93.9 0.07 2.4E-06 44.6 5.2 37 183-220 27-63 (236)
447 3cr8_A Sulfate adenylyltranfer 93.9 0.02 6.7E-07 54.0 2.0 24 183-206 369-392 (552)
448 3j16_B RLI1P; ribosome recycli 93.9 0.029 9.9E-07 53.5 3.1 23 183-205 103-125 (608)
449 1jwy_B Dynamin A GTPase domain 93.9 0.027 9.2E-07 48.6 2.6 26 181-206 22-47 (315)
450 2qtf_A Protein HFLX, GTP-bindi 93.9 0.03 1E-06 50.0 2.9 26 182-207 178-203 (364)
451 3lxw_A GTPase IMAP family memb 93.8 0.032 1.1E-06 46.7 3.0 25 183-207 21-45 (247)
452 4a1f_A DNAB helicase, replicat 93.8 0.14 4.7E-06 45.2 7.2 52 182-235 45-96 (338)
453 2axn_A 6-phosphofructo-2-kinas 93.8 0.036 1.2E-06 51.9 3.6 24 182-205 34-57 (520)
454 1u94_A RECA protein, recombina 93.8 0.052 1.8E-06 48.3 4.4 37 182-220 62-98 (356)
455 4edh_A DTMP kinase, thymidylat 93.8 0.04 1.4E-06 45.3 3.4 24 183-206 6-29 (213)
456 3upu_A ATP-dependent DNA helic 93.8 0.058 2E-06 49.4 4.8 44 160-206 21-68 (459)
457 3bk7_A ABC transporter ATP-bin 93.7 0.032 1.1E-06 53.3 3.1 23 183-205 117-139 (607)
458 2q6t_A DNAB replication FORK h 93.7 0.16 5.4E-06 46.4 7.6 58 178-236 195-252 (444)
459 3b1v_A Ferrous iron uptake tra 93.7 0.039 1.3E-06 47.1 3.3 24 183-206 3-26 (272)
460 4dhe_A Probable GTP-binding pr 93.7 0.018 6.2E-07 46.7 1.2 26 182-207 28-53 (223)
461 3a1s_A Iron(II) transport prot 93.7 0.042 1.4E-06 46.4 3.5 24 183-206 5-28 (258)
462 1f2t_A RAD50 ABC-ATPase; DNA d 93.7 0.044 1.5E-06 42.3 3.3 22 183-204 23-44 (149)
463 2yc2_C IFT27, small RAB-relate 93.7 0.015 5.1E-07 46.4 0.6 23 184-206 21-43 (208)
464 3iby_A Ferrous iron transport 93.7 0.036 1.2E-06 46.8 3.0 23 184-206 2-24 (256)
465 3fdi_A Uncharacterized protein 93.7 0.036 1.2E-06 45.0 2.9 24 183-206 6-29 (201)
466 3b60_A Lipid A export ATP-bind 93.7 0.032 1.1E-06 52.9 2.9 23 183-205 369-391 (582)
467 2yl4_A ATP-binding cassette SU 93.6 0.032 1.1E-06 53.0 2.9 23 183-205 370-392 (595)
468 4dkx_A RAS-related protein RAB 93.6 0.037 1.3E-06 45.5 2.9 22 185-206 15-36 (216)
469 3fkq_A NTRC-like two-domain pr 93.6 0.047 1.6E-06 48.6 3.8 25 181-205 141-166 (373)
470 3v9p_A DTMP kinase, thymidylat 93.6 0.035 1.2E-06 46.2 2.7 24 183-206 25-48 (227)
471 3cwq_A Para family chromosome 93.6 0.038 1.3E-06 45.0 2.9 22 185-206 2-24 (209)
472 3ld9_A DTMP kinase, thymidylat 93.6 0.05 1.7E-06 45.1 3.7 26 182-207 20-45 (223)
473 3b5x_A Lipid A export ATP-bind 93.6 0.035 1.2E-06 52.6 3.0 23 183-205 369-391 (582)
474 2e87_A Hypothetical protein PH 93.6 0.039 1.3E-06 48.9 3.2 26 181-206 165-190 (357)
475 2qmh_A HPR kinase/phosphorylas 93.6 0.05 1.7E-06 44.5 3.5 23 184-206 35-57 (205)
476 2r8r_A Sensor protein; KDPD, P 93.5 0.038 1.3E-06 46.0 2.8 22 185-206 8-29 (228)
477 4djt_A GTP-binding nuclear pro 93.5 0.018 6.2E-07 46.6 0.8 24 183-206 11-34 (218)
478 3qf4_A ABC transporter, ATP-bi 93.5 0.049 1.7E-06 51.7 3.9 23 183-205 369-391 (587)
479 1bif_A 6-phosphofructo-2-kinas 93.5 0.045 1.5E-06 50.4 3.5 24 183-206 39-62 (469)
480 3kjh_A CO dehydrogenase/acetyl 93.4 0.026 8.9E-07 46.6 1.7 22 185-206 2-23 (254)
481 2aka_B Dynamin-1; fusion prote 93.4 0.089 3.1E-06 44.7 5.1 26 182-207 25-50 (299)
482 1fx0_B ATP synthase beta chain 93.4 0.085 2.9E-06 48.9 5.1 52 183-235 165-219 (498)
483 3gj0_A GTP-binding nuclear pro 93.4 0.022 7.6E-07 46.3 1.1 22 183-204 15-36 (221)
484 3bgw_A DNAB-like replicative h 93.3 0.13 4.5E-06 47.0 6.4 52 182-235 196-247 (444)
485 1t9h_A YLOQ, probable GTPase E 93.3 0.016 5.4E-07 50.6 0.2 23 184-206 174-196 (307)
486 2ck3_D ATP synthase subunit be 93.3 0.079 2.7E-06 48.9 4.9 63 171-235 142-207 (482)
487 2orw_A Thymidine kinase; TMTK, 93.3 0.045 1.5E-06 43.8 2.8 21 184-204 4-24 (184)
488 1dek_A Deoxynucleoside monopho 93.3 0.051 1.7E-06 45.7 3.3 22 184-205 2-23 (241)
489 3k9g_A PF-32 protein; ssgcid, 93.3 0.046 1.6E-06 45.9 3.0 28 181-208 25-53 (267)
490 3th5_A RAS-related C3 botulinu 92.4 0.016 5.3E-07 46.5 0.0 24 183-206 30-53 (204)
491 2hjg_A GTP-binding protein ENG 93.2 0.097 3.3E-06 47.6 5.3 45 163-207 150-199 (436)
492 1tf7_A KAIC; homohexamer, hexa 93.1 0.044 1.5E-06 51.2 2.9 19 185-203 41-59 (525)
493 2dby_A GTP-binding protein; GD 93.1 0.045 1.5E-06 48.9 2.8 22 185-206 3-24 (368)
494 3ez2_A Plasmid partition prote 93.1 0.096 3.3E-06 46.9 5.0 26 180-205 105-131 (398)
495 1f5n_A Interferon-induced guan 93.1 0.09 3.1E-06 49.9 5.0 33 175-207 30-62 (592)
496 1ni3_A YCHF GTPase, YCHF GTP-b 93.1 0.045 1.5E-06 49.3 2.8 25 182-206 19-43 (392)
497 3r7w_A Gtpase1, GTP-binding pr 93.1 0.047 1.6E-06 47.3 2.9 23 184-206 4-26 (307)
498 1sky_E F1-ATPase, F1-ATP synth 93.1 0.062 2.1E-06 49.6 3.7 50 184-234 152-204 (473)
499 2oap_1 GSPE-2, type II secreti 93.0 0.047 1.6E-06 51.0 2.9 23 184-206 261-283 (511)
500 3q9l_A Septum site-determining 93.0 0.059 2E-06 44.8 3.3 23 184-206 3-26 (260)
No 1
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.65 E-value=4.3e-16 Score=118.16 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=76.5
Q ss_pred chHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCChHHHHHHHHHHHHHH
Q 038685 3 INFRLFSERLRRLVEGEEGTLPDAAKEQFQNLYTEIEIVTSLLSNYENDMFQILFQSLGGEEEFDFSELQGILKEMKDFV 82 (265)
Q Consensus 3 ~~v~~~~~kl~~~l~~~e~~~~~~~~~~~~~L~~~l~~l~~~l~~ae~~~~~~~~~~~~~~~~~~~~~v~~Wl~~lr~~~ 82 (265)
++++++++||.+++. +|+.++.+++++++.|+++|+.|+++|.+++. ++ .+..+ +.++.|+.+||+++
T Consensus 1 a~v~~ll~KL~~ll~-~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~---------~~-~~~~d-~~vk~W~~~vrdla 68 (115)
T 3qfl_A 1 AAISNLIPKLGELLT-EEFKLHKGVKKNIEDLGKELESMNAALIKIGE---------VP-REQLD-SQDKLWADEVRELS 68 (115)
T ss_dssp CTTCSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------SC-GGGCC-HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH---------hc-cccCC-HHHHHHHHHHHHHH
Confidence 477899999999999 99999999999999999999999999999998 51 12468 99999999999999
Q ss_pred HhhHHHHHHHHHhhhh
Q 038685 83 HESEKVIYIFMISRIT 98 (265)
Q Consensus 83 ~~~eDild~~~~~~~~ 98 (265)
||+||+||+|.++...
T Consensus 69 YD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 69 YVIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998764
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.62 E-value=1.4e-15 Score=144.34 Aligned_cols=78 Identities=12% Similarity=0.128 Sum_probs=70.1
Q ss_pred cccHHHHHHHHHHHhcC-CCCeEEEEEEcCCCCChhHHHHHHhh--cccccccCCeeEEEe--CC--CCHHHHHHHHHHH
Q 038685 163 VGLEDEMKELLDLLIVG-EPSLSVVAIVGSSGFDKTDFAGEAYN--SNYMKNYFYCRAWVG--CE--YYLHKVLDNIIKS 235 (265)
Q Consensus 163 vG~e~~~~~l~~~L~~~-~~~~~VI~IvG~gGvGKTTLa~~vy~--~~~v~~~F~~~~wV~--~~--~~~~~l~~~Il~~ 235 (265)
+||+.++++|.++|..+ +...+||+||||||+||||||+.+|+ +.+++.+|++++||+ +. ++...+++.|+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999765 44689999999999999999999998 678999999999999 43 4799999999999
Q ss_pred hCCCC
Q 038685 236 VMPRS 240 (265)
Q Consensus 236 l~~~~ 240 (265)
++...
T Consensus 211 l~~~~ 215 (549)
T 2a5y_B 211 LKSED 215 (549)
T ss_dssp HTTTS
T ss_pred HhcCc
Confidence 98753
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.33 E-value=2.6e-12 Score=131.18 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=74.1
Q ss_pred CCCCcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccc-cccC-CeeEEEe-CC-CC--HHHHHH
Q 038685 157 SKKRNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYM-KNYF-YCRAWVG-CE-YY--LHKVLD 230 (265)
Q Consensus 157 ~~~~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v-~~~F-~~~~wV~-~~-~~--~~~l~~ 230 (265)
...+.+|||+.++++|.++|...+...++|+|+||||+||||||+.+|++.++ ..+| +.+.||+ .. .+ ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 35567999999999999999876667999999999999999999999997654 5556 5666999 33 32 345577
Q ss_pred HHHHHhCCCCCCCccCChHHhHHHHHHhhc
Q 038685 231 NIIKSVMPRSMGSEIMDKDYELKITTDTTR 260 (265)
Q Consensus 231 ~Il~~l~~~~~~~~~~~~~~~~~~~~d~lr 260 (265)
.++..+.......... ......+.+.+|
T Consensus 201 ~~~~~l~~~~~~~~~~--~~~~~~~~~~l~ 228 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRL--PLNIEEAKDRLR 228 (1249)
T ss_dssp HHHHHHTTTCTTCSSC--CSSHHHHHHHHH
T ss_pred HHHHHhhhhcccccCC--CCCHHHHHHHHH
Confidence 7888887654322211 123445555655
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.30 E-value=2.7e-12 Score=128.03 Aligned_cols=75 Identities=20% Similarity=0.053 Sum_probs=66.3
Q ss_pred cccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCe-eEEEe--CCCCHHHHHHHHHHHh
Q 038685 161 NIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYC-RAWVG--CEYYLHKVLDNIIKSV 236 (265)
Q Consensus 161 ~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~-~~wV~--~~~~~~~l~~~Il~~l 236 (265)
-.|||+.++++|.++|...+ ..++|+|+||||+||||||+.+|++.+++.+|++ ++||+ +.++...++..|++.+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34999999999999998643 3789999999999999999999998889999997 99999 7788888888887754
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.22 E-value=3.2e-11 Score=114.85 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=64.6
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccc-cccC-CeeEEEe-CCCCHHHHHHHH--
Q 038685 158 KKRNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYM-KNYF-YCRAWVG-CEYYLHKVLDNI-- 232 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v-~~~F-~~~~wV~-~~~~~~~l~~~I-- 232 (265)
..+.+|||+.+.+.|.++|.......++|+|+||||+||||||+.+|++..+ ..+| +.++||+ ...+...++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~ 201 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQN 201 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHH
Confidence 4467999999999999999865556899999999999999999999998666 7889 5899999 555555555544
Q ss_pred -HHHhC
Q 038685 233 -IKSVM 237 (265)
Q Consensus 233 -l~~l~ 237 (265)
+..+.
T Consensus 202 l~~~l~ 207 (591)
T 1z6t_A 202 LCTRLD 207 (591)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 44554
No 6
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.43 E-value=9e-07 Score=79.16 Aligned_cols=79 Identities=15% Similarity=0.014 Sum_probs=59.9
Q ss_pred CcccccHHHHHHHHHHHhc--CCCCeEEEEEEcCCCCChhHHHHHHhhccccc----cc--CCeeEEEe--CCC-CHHHH
Q 038685 160 RNIVGLEDEMKELLDLLIV--GEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMK----NY--FYCRAWVG--CEY-YLHKV 228 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~--~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~----~~--F~~~~wV~--~~~-~~~~l 228 (265)
++++|++..++.+..+|.. .......+.|+|++|+||||||+.+++...-. .. ....+|+. ... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 7899999999999988854 23345688999999999999999999853111 11 33567777 445 88889
Q ss_pred HHHHHHHhCC
Q 038685 229 LDNIIKSVMP 238 (265)
Q Consensus 229 ~~~Il~~l~~ 238 (265)
+..++.++..
T Consensus 100 ~~~l~~~l~~ 109 (384)
T 2qby_B 100 LSSLAGKLTG 109 (384)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999988843
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.39 E-value=5.5e-07 Score=81.28 Aligned_cols=81 Identities=16% Similarity=0.104 Sum_probs=59.4
Q ss_pred CCcccccHHHHHHHHHHH-hc---C---CCCeEEEEEEcCCCCChhHHHHHHhhccccc---ccCC-eeEEEe--CCCCH
Q 038685 159 KRNIVGLEDEMKELLDLL-IV---G---EPSLSVVAIVGSSGFDKTDFAGEAYNSNYMK---NYFY-CRAWVG--CEYYL 225 (265)
Q Consensus 159 ~~~~vG~e~~~~~l~~~L-~~---~---~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~---~~F~-~~~wV~--~~~~~ 225 (265)
+..++||+.+.+.|..+| .. + ....-+|+|+|++|+|||||++.+++..... ..|. ..+|+. ...+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 368999999999999988 42 2 2233444449999999999999999853221 1233 357777 56788
Q ss_pred HHHHHHHHHHhCCC
Q 038685 226 HKVLDNIIKSVMPR 239 (265)
Q Consensus 226 ~~l~~~Il~~l~~~ 239 (265)
..++..|+.+++..
T Consensus 101 ~~~~~~l~~~l~~~ 114 (412)
T 1w5s_A 101 YTILSLIVRQTGYP 114 (412)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC
Confidence 89999999999754
No 8
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.33 E-value=1e-06 Score=77.46 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=55.1
Q ss_pred CCCCcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-CC-------CCHHHH
Q 038685 157 SKKRNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-CE-------YYLHKV 228 (265)
Q Consensus 157 ~~~~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-~~-------~~~~~l 228 (265)
..+..++||+.+.+.|.+++..+ +++.|+|++|+|||||++.+.+.. . .+|+. .. .+...+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHH
Confidence 34567999999999999988653 689999999999999999999853 2 67776 22 256777
Q ss_pred HHHHHHHhC
Q 038685 229 LDNIIKSVM 237 (265)
Q Consensus 229 ~~~Il~~l~ 237 (265)
++.+.+.+.
T Consensus 78 ~~~l~~~l~ 86 (350)
T 2qen_A 78 IKELQSTIS 86 (350)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHHH
Confidence 777777654
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.25 E-value=2.2e-06 Score=76.28 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=59.8
Q ss_pred CCcccccHHHHHHHHHHHhcC--CCCeEEEEEEcCCCCChhHHHHHHhhcccccccC---CeeEEEe--CCCCHHHHHHH
Q 038685 159 KRNIVGLEDEMKELLDLLIVG--EPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYF---YCRAWVG--CEYYLHKVLDN 231 (265)
Q Consensus 159 ~~~~vG~e~~~~~l~~~L~~~--~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F---~~~~wV~--~~~~~~~l~~~ 231 (265)
+++++|++.+++.|.++|... ......+.|+|++|+|||||++.+.+. ....| ...+|+. ...+...++..
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 478999999999999988642 334668899999999999999999984 33332 2456776 55577788888
Q ss_pred HHHHhCC
Q 038685 232 IIKSVMP 238 (265)
Q Consensus 232 Il~~l~~ 238 (265)
++.+++.
T Consensus 97 i~~~l~~ 103 (386)
T 2qby_A 97 LLESLDV 103 (386)
T ss_dssp HTTTTSC
T ss_pred HHHHhCC
Confidence 8887754
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.24 E-value=5e-06 Score=74.00 Aligned_cols=81 Identities=19% Similarity=0.132 Sum_probs=60.5
Q ss_pred CCcccccHHHHHHHHHHHhcC--CCCeEEEEEEcCCCCChhHHHHHHhhccccc----ccCCeeEEEe--CCCCHHHHHH
Q 038685 159 KRNIVGLEDEMKELLDLLIVG--EPSLSVVAIVGSSGFDKTDFAGEAYNSNYMK----NYFYCRAWVG--CEYYLHKVLD 230 (265)
Q Consensus 159 ~~~~vG~e~~~~~l~~~L~~~--~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~----~~F~~~~wV~--~~~~~~~l~~ 230 (265)
++.++|++..++.+..+|... ......+.|+|++|+||||||+.+.+...-. ..--..+|+. ...+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 378999999999999988542 3346678899999999999999999853111 0012356676 5567888899
Q ss_pred HHHHHhCCC
Q 038685 231 NIIKSVMPR 239 (265)
Q Consensus 231 ~Il~~l~~~ 239 (265)
.++.+++..
T Consensus 98 ~l~~~l~~~ 106 (387)
T 2v1u_A 98 AIAEAVGVR 106 (387)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhCCC
Confidence 999888653
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.20 E-value=1.7e-05 Score=70.73 Aligned_cols=78 Identities=14% Similarity=0.130 Sum_probs=59.5
Q ss_pred CcccccHHHHHHHHHHHhc---C-CCCeEEEEEEcCCCCChhHHHHHHhhcccccccC-CeeEEEe--CCCCHHHHHHHH
Q 038685 160 RNIVGLEDEMKELLDLLIV---G-EPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYF-YCRAWVG--CEYYLHKVLDNI 232 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~---~-~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F-~~~~wV~--~~~~~~~l~~~I 232 (265)
+.++|++..++.|..+|.. + .+..+.+.|+|++|+|||||++.+.+.. .... ...+|+. ...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH--hhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 6899999999999998865 2 2233488999999999999999999853 2221 2456666 555678999999
Q ss_pred HHHhCCC
Q 038685 233 IKSVMPR 239 (265)
Q Consensus 233 l~~l~~~ 239 (265)
+..++..
T Consensus 95 ~~~l~~~ 101 (389)
T 1fnn_A 95 ARSLNIP 101 (389)
T ss_dssp HHHTTCC
T ss_pred HHHhCcc
Confidence 9988653
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.17 E-value=3.6e-06 Score=74.02 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=50.7
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-CC------CCHHHHHH
Q 038685 158 KKRNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-CE------YYLHKVLD 230 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-~~------~~~~~l~~ 230 (265)
.+..++||+.+.+.|.+ +.. +++.|+|++|+|||||++.+.+... . ..+|+. .. .+...++.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHH
Confidence 45689999999999999 643 5899999999999999999998532 1 257887 43 24556655
Q ss_pred HHHHHh
Q 038685 231 NIIKSV 236 (265)
Q Consensus 231 ~Il~~l 236 (265)
.+.+.+
T Consensus 80 ~l~~~l 85 (357)
T 2fna_A 80 ELQKEI 85 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 13
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.98 E-value=7.7e-06 Score=65.00 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=38.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|++...+.+.+++.... ...+-|+|.+|+||||||+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999987643 455679999999999999999885
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.88 E-value=4e-05 Score=62.23 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=38.6
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|++..++.+..++.... ...+-|+|.+|+||||||+.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999997654 333889999999999999999884
No 15
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.84 E-value=1.3e-05 Score=63.57 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=38.3
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|++.....+.+.+.... ...+-|+|.+|+||||||+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999986643 445679999999999999999885
No 16
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.82 E-value=1.9e-05 Score=64.92 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=39.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.+++|++..++.|..++..+. ....+.|+|++|+||||||+.+.+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999987653 23578899999999999999998753
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.71 E-value=4.6e-05 Score=67.14 Aligned_cols=79 Identities=5% Similarity=0.038 Sum_probs=58.1
Q ss_pred CcccccHHHHHHHHHHHhcC--CCCeEEEEEEcCCCCChhHHHHHHhhcccccc------cCCeeEEEe--CCCCHHHHH
Q 038685 160 RNIVGLEDEMKELLDLLIVG--EPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKN------YFYCRAWVG--CEYYLHKVL 229 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~--~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~------~F~~~~wV~--~~~~~~~l~ 229 (265)
.-+.||+++...|...|... ......+-|+|++|+|||++++.|.+.-.-.. .| ..+.|+ .-.+...+.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHH
Confidence 34889999999999888542 34567778999999999999999998642111 12 245565 556788999
Q ss_pred HHHHHHhCCC
Q 038685 230 DNIIKSVMPR 239 (265)
Q Consensus 230 ~~Il~~l~~~ 239 (265)
..|++++.+.
T Consensus 99 ~~I~~~L~g~ 108 (318)
T 3te6_A 99 EKIWFAISKE 108 (318)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHhcCC
Confidence 9999999765
No 18
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=0.00013 Score=63.28 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=38.6
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|++..++.|..++..+. ...+-++|++|+||||+|+.+.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH
Confidence 579999999999999987654 223889999999999999999985
No 19
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.51 E-value=6.6e-05 Score=58.10 Aligned_cols=46 Identities=13% Similarity=0.046 Sum_probs=34.6
Q ss_pred cccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 161 NIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 161 ~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+++|....+..+.+.+..-...-.-|-|+|.+|+|||+||+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999998887542222233569999999999999999985
No 20
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.00018 Score=62.46 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=38.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|.+..++.|..++..+. ...+-++|++|+||||+|+.+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH
Confidence 579999999999999887654 334889999999999999999885
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.40 E-value=0.00012 Score=62.70 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=38.7
Q ss_pred CCcccccHHHHHHHHHHHhcC-----------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 159 KRNIVGLEDEMKELLDLLIVG-----------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 159 ~~~~vG~e~~~~~l~~~L~~~-----------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-++++|.+..++.|...+... -....-+-|+|++|+||||||+.+.+.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 367999999999998877431 123456789999999999999999985
No 22
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.31 E-value=0.00034 Score=56.74 Aligned_cols=51 Identities=18% Similarity=0.075 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCC--CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 168 EMKELLDLLIVGEP--SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 168 ~~~~l~~~L~~~~~--~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
..+.+..++..... ....|-|+|.+|+||||||+.+++.. ..+....+|++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~ 89 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVY 89 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEE
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE
Confidence 34445555544322 12678899999999999999999853 23334455555
No 23
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.30 E-value=0.00025 Score=61.66 Aligned_cols=47 Identities=34% Similarity=0.386 Sum_probs=38.2
Q ss_pred CcccccHHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV-----------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~-----------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.|.+++.. +-.....|.++|++|+||||||+.+.+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 5799999999998887643 1133567889999999999999999985
No 24
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.29 E-value=0.00018 Score=63.26 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=39.1
Q ss_pred CcccccHHHHHHHHHHHhcC---CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG---EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~---~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..+..+..++... ......|-|+|++|+||||||+.+.+.
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 67999999999999888642 334556789999999999999999874
No 25
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.28 E-value=0.00026 Score=65.54 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=37.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|++..+..++..|.... ..-+-++|.+|+||||||+.+...
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999987643 233469999999999999999885
No 26
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.25 E-value=0.00023 Score=59.86 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=36.0
Q ss_pred CcccccHHHHHHHHHHHh---cCC-------CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLI---VGE-------PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~---~~~-------~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.|.+++. ... ....-|-++|.+|+||||||+.+.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 579999998888876652 111 23345779999999999999999884
No 27
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.25 E-value=0.00028 Score=57.77 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 169 MKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 169 ~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.++|.+.+....+.-.+|+|+|..|+|||||++.+..-
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455554433345789999999999999999999873
No 28
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.22 E-value=8.4e-05 Score=57.38 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=33.0
Q ss_pred CcccccHHHHHHHHHHHhcC-CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG-EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~-~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|.+..+.++.+.+..- ..... |-|+|.+|+|||+||+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~-vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSP-VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSC-EEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCc-EEEECCCCccHHHHHHHHHHh
Confidence 46889999988888887531 11233 569999999999999999984
No 29
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.21 E-value=0.00037 Score=61.81 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=37.2
Q ss_pred CCcccccHHHHHHH---HHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 159 KRNIVGLEDEMKEL---LDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 159 ~~~~vG~e~~~~~l---~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
-++++|.+..+..+ ...+..+......+-|+|++|+||||||+.+.+..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999887764 44444444334678899999999999999999853
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.20 E-value=0.00028 Score=61.00 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=35.7
Q ss_pred cccccHHHHHHHHHHHhc-------------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 161 NIVGLEDEMKELLDLLIV-------------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 161 ~~vG~e~~~~~l~~~L~~-------------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+++|.+..++.|.+++.. .......|-|+|.+|+||||||+.+.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 689999999988876532 1233456789999999999999977764
No 31
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.19 E-value=0.00029 Score=56.15 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-..+.|+|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 578899999999999999999875
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.19 E-value=0.00029 Score=60.66 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=37.9
Q ss_pred CcccccHHHHHHHHHHHhcC----------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG----------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~----------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.|.+++... .....-|-|+|++|+||||||+.+.+.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 57999999999998877321 112457789999999999999999984
No 33
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.18 E-value=0.00026 Score=62.19 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=38.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|.+..++.|..++..+. ...+-++|++|+||||||+.+.+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999887653 222789999999999999999885
No 34
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.16 E-value=0.00029 Score=62.17 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=35.8
Q ss_pred CcccccHHHHHHHHHHHhcC---CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG---EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~---~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+.++|.+..++.+-..+..+ ...+..+.++|++|+||||||+.+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 46788877777766655432 234567899999999999999999884
No 35
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.14 E-value=0.0004 Score=60.91 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=37.8
Q ss_pred CcccccHHHHHHHHHHHhc----------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV----------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~----------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.|...+.. .....+-|-++|.+|+|||+||+.|.+.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 6799999999999887731 1122456789999999999999999985
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.13 E-value=0.00022 Score=62.06 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=38.0
Q ss_pred CcccccHHHHHHHHHHHhc---CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV---GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~---~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|++..+..+..++.. .......+-|+|++|+||||||+.+.+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999998888753 1223456789999999999999999884
No 37
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.13 E-value=0.00035 Score=62.29 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=38.0
Q ss_pred CcccccHHHHHHHHHHHhc----------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV----------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~----------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.|.+.+.. ......-|-|+|.+|+||||||+.+.+.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999887742 1123556789999999999999999884
No 38
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.13 E-value=0.00095 Score=56.51 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=33.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..+..+.+.+..-.....-|-|+|.+|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46889999999888877542212244569999999999999999984
No 39
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.13 E-value=0.00049 Score=60.88 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=39.1
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.+++|++..++.|...+..+. ....+-|+|.+|+||||||+.+.+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999987653 23467799999999999999998753
No 40
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.13 E-value=0.00041 Score=58.55 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=35.1
Q ss_pred CcccccHHHHHHHHHHHh---cC-------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLI---VG-------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~---~~-------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.+...+. .. .....-|.|+|.+|+||||||+.+.+.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 679999988887766542 11 011234789999999999999999885
No 41
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.12 E-value=0.00061 Score=55.50 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHhcC-CCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 165 LEDEMKELLDLLIVG-EPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 165 ~e~~~~~l~~~L~~~-~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+++..+.|.+.+..- .....+|+|.|..|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445667777777653 24568999999999999999999986
No 42
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.11 E-value=0.00069 Score=55.77 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=31.0
Q ss_pred Cccccc---HHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGL---EDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~---e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|. +.....+..++..+ ....+-|+|.+|+||||||+.+.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456652 34444555554433 3567789999999999999999874
No 43
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.09 E-value=0.00057 Score=60.09 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=37.5
Q ss_pred CcccccHHHHHHHHHHHhc---------C-CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV---------G-EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~---------~-~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.|.+.+.. + ....+-|-++|++|+|||+||+.+.+.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 6899999999998877632 1 122467789999999999999999985
No 44
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=0.00059 Score=63.91 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=39.5
Q ss_pred CcccccHHHHHHHHHHHhcC---------------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG---------------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~---------------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|.+..++.|..||... .+..+.+-|+|++|+||||||+.+.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999641 013468889999999999999999985
No 45
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.05 E-value=0.00029 Score=55.08 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCChhHHHHHH
Q 038685 184 SVVAIVGSSGFDKTDFAGEA 203 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~v 203 (265)
.+|.|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 46
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.05 E-value=0.0007 Score=58.76 Aligned_cols=53 Identities=15% Similarity=0.061 Sum_probs=34.1
Q ss_pred HHHHHHHHHhc----CCCCeEEEEEEcCCCCChhHHHHHHhhcccccc-cCCeeEEEe
Q 038685 168 EMKELLDLLIV----GEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKN-YFYCRAWVG 220 (265)
Q Consensus 168 ~~~~l~~~L~~----~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~-~F~~~~wV~ 220 (265)
-.+.|.+.+.. ......+|+|+|..|+|||||++.+........ ...+.+.|+
T Consensus 12 ~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~ 69 (290)
T 1odf_A 12 TIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYAS 69 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEE
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEec
Confidence 33444444433 345678999999999999999999887422211 133555557
No 47
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.03 E-value=0.0004 Score=59.75 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=37.1
Q ss_pred CcccccHHHHHHHHHHHhcC------------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG------------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~------------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..++|.+..++.+...+... .....-+-++|.+|+||||||+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999998877540 112345679999999999999999874
No 48
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.00 E-value=0.00036 Score=60.26 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=37.6
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.+..++..+. ...+-++|++|+||||+|+.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHH
Confidence 569999999999988886543 333789999999999999999874
No 49
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.98 E-value=0.00062 Score=62.69 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=37.4
Q ss_pred CcccccHHHH---HHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEM---KELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~---~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..+ ..|...+..+. +..+-++|.+|+||||||+.|.+.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH
Confidence 6789988887 67777776654 567889999999999999999984
No 50
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.98 E-value=0.00039 Score=61.30 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=35.7
Q ss_pred CcccccHHHHHHHHHHH-hcCCCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 160 RNIVGLEDEMKELLDLL-IVGEPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L-~~~~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
++++|.+.....+.+++ ..+. ... +.|+|+.|+|||||++.+..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 57899999888888887 4332 233 89999999999999998877
No 51
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.91 E-value=0.00046 Score=55.24 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+|+|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999874
No 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.91 E-value=0.0009 Score=65.52 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=37.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|++..+..+...|.... ..-+-++|.+|+||||+|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999987643 223569999999999999999875
No 53
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.90 E-value=0.00097 Score=57.25 Aligned_cols=46 Identities=28% Similarity=0.315 Sum_probs=33.9
Q ss_pred CcccccHHHHHHHHHHHhc---C---------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV---G---------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~---~---------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.++.|.++.++.|.+.+.. . ..... +.++|++|+||||||+.+...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 5788999988888775421 1 11223 899999999999999999884
No 54
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.90 E-value=0.00075 Score=56.80 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=34.2
Q ss_pred CcccccHHHHHHHHHHHhc--C---------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV--G---------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~--~---------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..+.++.+.... . ..... +.|+|.+|+|||||++.+.+.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 5789988887777665421 1 11123 889999999999999999985
No 55
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.87 E-value=0.00069 Score=58.50 Aligned_cols=47 Identities=17% Similarity=0.406 Sum_probs=37.7
Q ss_pred CcccccHHHHHHHHHHHhcC-------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG-------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~-------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..++|.+..++.+...+... ......+.++|.+|+||||||+.+.+.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 46889999988888877542 122468899999999999999999884
No 56
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.86 E-value=0.00067 Score=59.15 Aligned_cols=47 Identities=28% Similarity=0.330 Sum_probs=36.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|....+..+.+.+..-.....-|-|+|.+|+|||++|+.|++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 46899999999998887643222334569999999999999999984
No 57
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.83 E-value=0.00043 Score=58.68 Aligned_cols=47 Identities=23% Similarity=0.360 Sum_probs=34.9
Q ss_pred CcccccHHHHHHHHHHHhc----------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV----------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~----------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.+.+.+.. +.....-|-++|.+|+||||||+.+.+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 5799998888888776531 1111223669999999999999999985
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.83 E-value=0.00073 Score=67.10 Aligned_cols=46 Identities=15% Similarity=0.369 Sum_probs=38.6
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 159 KRNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 159 ~~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-++++|++..+..+++.|.... ..-+.++|.+|+||||||+.+.+.
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 3579999999999999987643 334578999999999999999885
No 59
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.81 E-value=0.0011 Score=58.46 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=36.3
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|.+..+..|...+..+. +..+.++|++|+||||||+.+.+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 568898888888888776654 333789999999999999998874
No 60
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.81 E-value=0.00061 Score=53.35 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|.|.|+.|+||||+++.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999764
No 61
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.81 E-value=0.00061 Score=54.46 Aligned_cols=24 Identities=8% Similarity=0.296 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+|+|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999874
No 62
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.78 E-value=0.001 Score=56.85 Aligned_cols=48 Identities=23% Similarity=0.377 Sum_probs=35.3
Q ss_pred CCCcccccHHHHHHHHHHHhc--C---------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 158 KKRNIVGLEDEMKELLDLLIV--G---------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~--~---------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-++++|.+..+.++.+.... . ..... |.|+|.+|+|||||++.+.+.
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 336789998888877665421 1 11123 889999999999999999985
No 63
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.77 E-value=0.00078 Score=53.14 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 64
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.77 E-value=0.002 Score=54.79 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=35.5
Q ss_pred CcccccHHHHHHHHHH-------Hhc-CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDL-------LIV-GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~-------L~~-~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..++|.....+.++.. +.. ......-+-|+|.+|+||||||+.+.+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5678887777766663 222 2345677889999999999999999985
No 65
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.76 E-value=0.0013 Score=57.39 Aligned_cols=38 Identities=24% Similarity=0.142 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 169 MKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 169 ~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+..++.........+-|+|++|+||||||+.+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34444444443334567889999999999999999984
No 66
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.75 E-value=0.0015 Score=56.86 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=38.9
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..+..|..++..+. ...++-+.|++|+||||+|+.+.+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 679999999999999987553 3467778899999999999999875
No 67
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.75 E-value=0.0006 Score=53.67 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|+|+|+.|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 68
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.75 E-value=0.00073 Score=54.64 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+|+|+|+.|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 358999999999999999999873
No 69
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.75 E-value=0.0013 Score=60.46 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=37.7
Q ss_pred CcccccHHHHHHHHHHHhc----------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV----------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~----------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.|...+.. .....+-|-++|++|+|||+||+.|.+.
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999887631 1123467789999999999999999985
No 70
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.75 E-value=0.0011 Score=59.63 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=37.7
Q ss_pred CcccccHHHHHHHHHHHhcC----------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG----------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~----------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.|..++... .....-|-|+|.+|+|||+||+.|.+.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 67999999999998887321 112456789999999999999999875
No 71
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.74 E-value=0.0011 Score=59.14 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=36.8
Q ss_pred CcccccHHHHHHHHHHHhcC----------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG----------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~----------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|.+..++.|...+... ....+-|-++|++|+|||+||+.+.+.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999998876311 112345779999999999999999985
No 72
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.74 E-value=0.00078 Score=53.48 Aligned_cols=23 Identities=43% Similarity=0.748 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997654
No 73
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.74 E-value=0.0013 Score=58.54 Aligned_cols=46 Identities=24% Similarity=0.207 Sum_probs=35.7
Q ss_pred cccccHHHHHHHHHHHhc-------------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 161 NIVGLEDEMKELLDLLIV-------------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 161 ~~vG~e~~~~~l~~~L~~-------------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.++|.+..++.+...+.. .......|-++|++|+|||++|+.|.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 478999999988887721 1113456789999999999999999874
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.74 E-value=0.0014 Score=64.14 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=52.3
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhccc---cc-ccCCeeEEEe----------CCCCH
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNY---MK-NYFYCRAWVG----------CEYYL 225 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~---v~-~~F~~~~wV~----------~~~~~ 225 (265)
++++|++..+..+++.|.... ..-+-++|.+|+||||||+.+.+... +. ..+.+.+|.. ..-..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~ 263 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCH
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchH
Confidence 579999999999999887543 33456999999999999999987421 11 1134444432 11234
Q ss_pred HHHHHHHHHHhCC
Q 038685 226 HKVLDNIIKSVMP 238 (265)
Q Consensus 226 ~~l~~~Il~~l~~ 238 (265)
...++.+++.+..
T Consensus 264 e~~l~~~~~~~~~ 276 (758)
T 1r6b_X 264 EKRFKALLKQLEQ 276 (758)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHh
Confidence 5667777777754
No 75
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.73 E-value=0.00071 Score=54.89 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+|.|+|+.|+||||+++.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
No 76
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.70 E-value=0.0018 Score=59.56 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=36.1
Q ss_pred CcccccHHHHHHHHHHH---hcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLL---IVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L---~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.+..++ ..+....+-+-++|++|+|||+||+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 68999998888665544 334323345779999999999999999985
No 77
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.70 E-value=0.00093 Score=54.44 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|+|+|..|+|||||++.+..-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999873
No 78
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.69 E-value=0.00093 Score=53.51 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+|+|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 79
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.68 E-value=0.00099 Score=52.59 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999998763
No 80
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.67 E-value=0.0011 Score=53.91 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-.+|+|+|+.|+|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999874
No 81
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.67 E-value=0.00089 Score=52.90 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|-|.|++|+||||+++.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 82
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.65 E-value=0.00097 Score=53.52 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 83
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0018 Score=59.24 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=37.6
Q ss_pred CcccccHHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV-----------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~-----------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+++.|.++.+++|.+.+.- +-...+-|-++|++|+|||+||+.|.+.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999998876632 2234566789999999999999999984
No 84
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.62 E-value=0.0011 Score=52.86 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|.|.|+.|+||||+++.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 85
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.61 E-value=0.0023 Score=52.40 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 168 EMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 168 ~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+.+...+.. ....+|.|+|.+|+|||||+..+...
T Consensus 25 ~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 25 LADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444444432 34788999999999999999998875
No 86
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.61 E-value=0.0011 Score=53.64 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+|+|+|+.|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999774
No 87
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.60 E-value=0.001 Score=51.75 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.-..+.|+|..|+|||||++.+++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999999843
No 88
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.60 E-value=0.0013 Score=53.53 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|+|+|+.|+|||||++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999773
No 89
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.59 E-value=0.00085 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999863
No 90
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.59 E-value=0.0011 Score=54.51 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999875
No 91
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.59 E-value=0.0011 Score=53.73 Aligned_cols=25 Identities=28% Similarity=0.322 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-.+|+|+|+.|+|||||++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999763
No 92
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.58 E-value=0.0011 Score=53.74 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 93
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.58 E-value=0.0011 Score=53.27 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999874
No 94
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.58 E-value=0.0013 Score=53.02 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+..+|+|+|+.|+||||+++.+-.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999876
No 95
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.56 E-value=0.0014 Score=52.33 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|.|++|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999763
No 96
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.56 E-value=0.0011 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|.|+|+.|+||||+++.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999763
No 97
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.55 E-value=0.003 Score=56.33 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHHHhc--CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 163 VGLEDEMKELLDLLIV--GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 163 vG~e~~~~~l~~~L~~--~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
|+.+.-.+.+++.|.. .......|.|+|+.|+||||+++.+...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4556666777777642 2334667899999999999999988773
No 98
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.54 E-value=0.0013 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 99
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.53 E-value=0.0013 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|.|.|+.|+||||+++.+.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 100
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0021 Score=58.92 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=37.6
Q ss_pred CcccccHHHHHHHHHHHh----c-------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLI----V-------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~----~-------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+++.|.++.+++|.+.+. . +-+..+-|-++|++|+|||+||+.|.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 678999999999887642 2 1234567789999999999999999985
No 101
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0023 Score=58.64 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=37.4
Q ss_pred CcccccHHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV-----------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~-----------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+++.|.++.+++|.+.+.- +-...+-|-++|++|+|||+||+.|.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 5788999999988776632 1234567789999999999999999885
No 102
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.53 E-value=0.001 Score=53.88 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|.|+.|+||||||+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
No 103
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.51 E-value=0.0021 Score=59.88 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=37.7
Q ss_pred CcccccHHHHHHHHHHHhcC-----------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG-----------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~-----------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|.+..+..|.+++... .....-|-|+|.+|+|||+||+.|.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999998877431 233455789999999999999999885
No 104
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.51 E-value=0.0014 Score=53.58 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 568999999999999999999874
No 105
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.50 E-value=0.0011 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999976
No 106
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.49 E-value=0.0022 Score=52.41 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=31.2
Q ss_pred ccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 162 IVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 162 ~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+-+..+..+.+...+... ...+|+|+|.+|+|||||+..+...
T Consensus 11 l~~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 11 LAENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CHHHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334445555555555332 4789999999999999999988764
No 107
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.49 E-value=0.0016 Score=51.96 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 108
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.47 E-value=0.0014 Score=51.41 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|+|.|+.|+||||+++.+-+.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999773
No 109
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.46 E-value=0.0014 Score=53.43 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998763
No 110
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.46 E-value=0.0017 Score=56.96 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
....+|+|+|..|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45689999999999999999999873
No 111
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.46 E-value=0.0018 Score=52.30 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|.|.|+.|+||||+++.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999864
No 112
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.46 E-value=0.0014 Score=54.92 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999983
No 113
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.45 E-value=0.0016 Score=57.16 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
..+||+|.|-|||||||.+-.+--
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 579999999999999998877654
No 114
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.45 E-value=0.0034 Score=55.84 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 169 MKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 169 ~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
...+...+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554445688999999999999999999864
No 115
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.43 E-value=0.0018 Score=54.60 Aligned_cols=26 Identities=8% Similarity=0.150 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
....+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998773
No 116
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.0021 Score=58.20 Aligned_cols=47 Identities=23% Similarity=0.324 Sum_probs=37.0
Q ss_pred CcccccHHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV-----------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~-----------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+++.|.++.+++|.+.+.- +-...+-|-++|++|+|||+||+.|.+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 5788999999988776532 1233456779999999999999999885
No 117
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.42 E-value=0.0033 Score=58.28 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=35.4
Q ss_pred CcccccHHHHHHHHHHHhc--C--------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV--G--------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~--~--------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|.++.++++.+.+.. . -.-.+-|.++|++|+||||||+.|.+.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5799999988888776531 1 111233779999999999999999985
No 118
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.42 E-value=0.002 Score=56.31 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=35.6
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
..++|.+..+..+...+..+. -+-++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 578999999988888877642 466899999999999999977
No 119
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.41 E-value=0.0034 Score=55.23 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
....+|||.|..|+|||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999999976
No 120
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.41 E-value=0.0028 Score=55.93 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+...+|+|+|..|+|||||++.+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999874
No 121
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.41 E-value=0.0014 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|+|++|+||||+++.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999999763
No 122
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.41 E-value=0.002 Score=54.08 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-.+|+|.|..|+|||||++.+..-
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999773
No 123
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.41 E-value=0.0019 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.186 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-.+|.|+|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 124
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.40 E-value=0.0018 Score=63.95 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=37.7
Q ss_pred CcccccHHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV-----------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~-----------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.|.+++.. +-....-|.|+|.+|+||||||+.+.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5689999999998887743 1123456899999999999999999874
No 125
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.40 E-value=0.0013 Score=53.50 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|+|+.|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 568899999999999999999774
No 126
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.39 E-value=0.0017 Score=51.89 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|.|+.|+||||+++.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
No 127
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.39 E-value=0.003 Score=56.35 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=35.4
Q ss_pred CcccccHHHHHHHHHHHhc----------------------------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV----------------------------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~----------------------------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..++|.+..++.|...+.. .......|-++|.+|+||||||+.+.+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 4688998888888776620 0112345779999999999999999874
No 128
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.39 E-value=0.0036 Score=52.58 Aligned_cols=40 Identities=18% Similarity=0.064 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 167 DEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 167 ~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
....++...+........+|.|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444444333335678999999999999999999763
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.37 E-value=0.0021 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-.+++++|..|.|||||++.+..-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999999873
No 130
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.37 E-value=0.002 Score=51.17 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-..|.+.|+.|+||||+++.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 131
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.36 E-value=0.0014 Score=51.84 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|.|+|++|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 132
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.36 E-value=0.002 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
....|.|+|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998774
No 133
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.36 E-value=0.0045 Score=53.42 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcC---CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 168 EMKELLDLLIVG---EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 168 ~~~~l~~~L~~~---~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.++++..++.+ .....+|-|.|++|+||||||+.+...
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 334444444433 234678999999999999999999763
No 134
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.35 E-value=0.0079 Score=49.61 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=36.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccc----cCCeeEEEe-CC-CCHHHHHHHHHHHhC
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKN----YFYCRAWVG-CE-YYLHKVLDNIIKSVM 237 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~----~F~~~~wV~-~~-~~~~~l~~~Il~~l~ 237 (265)
.-.++.|+|.+|+|||||++.+........ .-..++|+. .. ++...+. .+++.++
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g 83 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYG 83 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcC
Confidence 346899999999999999999987422211 125678888 33 4554443 3444444
No 135
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.34 E-value=0.002 Score=54.58 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|.|+|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999998654
No 136
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.34 E-value=0.0014 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|+.|+|||||++.+..-
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999763
No 137
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.33 E-value=0.0035 Score=52.86 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcC---CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 166 EDEMKELLDLLIVG---EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 166 e~~~~~l~~~L~~~---~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+...+.++..+..+ .....+|.|+|++|+||||+|+.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34444555555443 234678999999999999999999763
No 138
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.33 E-value=0.0023 Score=56.06 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=32.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..+..+...+.... ..-|-|+|.+|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 568998886665544443322 223779999999999999999984
No 139
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.33 E-value=0.0021 Score=51.07 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|.|+.|+||||+++.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
No 140
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.003 Score=58.12 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=37.1
Q ss_pred CcccccHHHHHHHHHHHh----c-------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLI----V-------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~----~-------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+++.|.++.+++|.+.+. . +-...+-|-++|++|+|||+||+.|.+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 478899999999977642 1 2234566779999999999999999984
No 141
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.32 E-value=0.0022 Score=51.86 Aligned_cols=24 Identities=21% Similarity=0.098 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|.|+.|+||||+++.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 142
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.32 E-value=0.0014 Score=52.14 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998763
No 143
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.31 E-value=0.0019 Score=54.56 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAY 204 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy 204 (265)
-.+|+|+|+.|+|||||++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 144
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.31 E-value=0.0053 Score=49.88 Aligned_cols=43 Identities=14% Similarity=0.005 Sum_probs=31.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe--CCCCHHHHH
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG--CEYYLHKVL 229 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~--~~~~~~~l~ 229 (265)
.-.++.|+|.+|+|||||+..+.. . .=..++|+. ..++...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHH
Confidence 456899999999999999999986 1 124567777 335555544
No 145
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.31 E-value=0.0019 Score=51.79 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|.|+.|+||||+++.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999774
No 146
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.29 E-value=0.0024 Score=54.20 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|+|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 147
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.29 E-value=0.0022 Score=51.10 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 148
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.28 E-value=0.0023 Score=55.87 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|+|+|.+|+|||||++.+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999999863
No 149
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.28 E-value=0.0053 Score=57.27 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=35.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..++|.+..++.+...+..+. -|-++|.+|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 468999998888887776542 4678999999999999999884
No 150
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.27 E-value=0.0023 Score=51.08 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|+|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999999999874
No 151
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.25 E-value=0.0024 Score=52.37 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=28.4
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhccccc----ccCCeeEEEe
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMK----NYFYCRAWVG 220 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~----~~F~~~~wV~ 220 (265)
.-.+++|+|..|+|||||++.+....... ..-...+|+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 45799999999999999999997632111 1134578887
No 152
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.24 E-value=0.0019 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999773
No 153
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.24 E-value=0.0025 Score=49.77 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|.|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 154
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.23 E-value=0.0024 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.-.+++|+|..|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 357899999999999999998873
No 155
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.23 E-value=0.0024 Score=53.79 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+. .+++|+|..|+|||||.+.+..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 35 7999999999999999999987
No 156
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.22 E-value=0.002 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998874
No 157
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.22 E-value=0.0019 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=17.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999764
No 158
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.21 E-value=0.0024 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999986
No 159
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.20 E-value=0.0027 Score=51.55 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-.+|+|.|+.|+||||+++.+-+.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998773
No 160
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.20 E-value=0.0026 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|.|.|+.|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999763
No 161
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.19 E-value=0.0025 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|+|..|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999863
No 162
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.19 E-value=0.0057 Score=53.26 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
....+|+|+|..|+|||||++.+..-
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999873
No 163
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.19 E-value=0.0054 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|+|+|.+|+||||++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998763
No 164
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.18 E-value=0.0024 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 165
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.18 E-value=0.0043 Score=56.86 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-+.|+|.+|+||||||+.|.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 677889999999999999999984
No 166
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.17 E-value=0.0025 Score=52.84 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-.+++|+|+.|+|||||++.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999999999874
No 167
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.15 E-value=0.0031 Score=54.93 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+++|+|..|+|||||++.+..-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999874
No 168
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.14 E-value=0.0053 Score=57.83 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=36.6
Q ss_pred CcccccHHHHHHHHHHHhc----CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV----GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~----~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|.+..+..+.+.+.- ......++.++|++|+||||||+.+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4689998888887665431 2224568999999999999999999874
No 169
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.14 E-value=0.0029 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
...+|+|.|+.|+||||+|+.+-.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 170
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.13 E-value=0.003 Score=51.28 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|.|+.|+||||+++.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 171
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.13 E-value=0.003 Score=50.53 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 172
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.13 E-value=0.0028 Score=51.80 Aligned_cols=25 Identities=12% Similarity=0.379 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-++|+|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3578999999999999999999864
No 173
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.13 E-value=0.0034 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 174
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.13 E-value=0.0038 Score=58.19 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=35.5
Q ss_pred CCcccccHHHHHHHHHHHhc--CC--------CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 159 KRNIVGLEDEMKELLDLLIV--GE--------PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 159 ~~~~vG~e~~~~~l~~~L~~--~~--------~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-++++|.++.+.++.+.... .. .-.+-|.|+|.+|+||||||+.|.+.
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 36799999888887766421 10 11123889999999999999999874
No 175
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.13 E-value=0.0018 Score=53.74 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=16.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAY 204 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy 204 (265)
-.+|+|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999998
No 176
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.12 E-value=0.0035 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.112 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+|+|.|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999773
No 177
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.10 E-value=0.0028 Score=54.82 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
....+-++|++|+|||+||+.|.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999985
No 178
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.10 E-value=0.0029 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999873
No 179
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.10 E-value=0.0028 Score=51.36 Aligned_cols=24 Identities=8% Similarity=-0.061 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|.|+.|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 180
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.09 E-value=0.0029 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 181
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.08 E-value=0.003 Score=53.07 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||.+.+..-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 182
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.07 E-value=0.0013 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|+|.|..|+|||||++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999764
No 183
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.07 E-value=0.0057 Score=56.87 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-.+|+|+|..|+|||||++.+..-
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4579999999999999999999873
No 184
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.06 E-value=0.0031 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 185
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.04 E-value=0.0041 Score=50.75 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+|.|.|+.|+||||+++.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998774
No 186
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.04 E-value=0.0032 Score=54.16 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999986
No 187
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.03 E-value=0.0035 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 188
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.0062 Score=55.57 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=37.2
Q ss_pred CcccccHHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIV-----------GEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~-----------~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+++.|.++.+++|.+.+.- +-...+=|-++|++|+|||+||+.|.+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 5788999999988776531 1134566789999999999999999985
No 189
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.02 E-value=0.0034 Score=53.08 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+++|+|..|+|||||++.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999998
No 190
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.02 E-value=0.0033 Score=52.40 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 191
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.00 E-value=0.0034 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46899999999999999999987
No 192
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.99 E-value=0.0036 Score=50.43 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
No 193
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.99 E-value=0.0033 Score=54.64 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|+++|.+|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998764
No 194
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.97 E-value=0.003 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|+|..|+|||||++.+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999873
No 195
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.97 E-value=0.0031 Score=51.09 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|-|+|+.|+|||||++.+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4779999999999999999864
No 196
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.97 E-value=0.0036 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 197
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.97 E-value=0.0039 Score=51.19 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|.|.|+.|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999774
No 198
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.96 E-value=0.0037 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999883
No 199
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.95 E-value=0.0039 Score=50.31 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhh
Q 038685 185 VVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 200
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.95 E-value=0.0037 Score=53.12 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 201
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.95 E-value=0.0047 Score=51.20 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+.+||-|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999874
No 202
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.94 E-value=0.0037 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999987
No 203
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.94 E-value=0.0039 Score=50.86 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 204
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.93 E-value=0.0038 Score=53.49 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 205
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.93 E-value=0.0017 Score=51.79 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|+|+|..|+|||||++.+..-
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 206
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.93 E-value=0.0039 Score=51.50 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|.|.|+.|+||||+++.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999763
No 207
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.93 E-value=0.012 Score=50.46 Aligned_cols=52 Identities=13% Similarity=0.067 Sum_probs=35.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCC-eeEEEeCCCCHHHHHHHHHHHh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFY-CRAWVGCEYYLHKVLDNIIKSV 236 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~-~~~wV~~~~~~~~l~~~Il~~l 236 (265)
-.+++|+|.+|+|||||++.+....... -. .++|+..+.+...+.+.++...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLH 87 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998753221 22 4556663334556666655544
No 208
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.92 E-value=0.0039 Score=53.07 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999863
No 209
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.92 E-value=0.004 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567899999999999999998764
No 210
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.91 E-value=0.0046 Score=55.25 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|+|+|..|+|||||++.+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999999874
No 211
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.90 E-value=0.004 Score=53.14 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999987
No 212
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.89 E-value=0.0043 Score=49.59 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3678999999999999999999874
No 213
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.88 E-value=0.0042 Score=52.61 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|+|..|+|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999873
No 214
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.88 E-value=0.0048 Score=53.86 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|+|+|.+|+||||++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4689999999999999999999874
No 215
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.87 E-value=0.0044 Score=50.60 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998653
No 216
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.87 E-value=0.0042 Score=53.49 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999873
No 217
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.86 E-value=0.0076 Score=55.31 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=36.3
Q ss_pred CcccccHHHHHHHHHHHhcC------------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG------------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~------------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..++|.++.++.|...+... ....+-|-++|++|+||||||+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999988887766321 112455789999999999999999884
No 218
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.86 E-value=0.0043 Score=49.86 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 219
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.85 E-value=0.0042 Score=52.64 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|+|..|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 220
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.82 E-value=0.0044 Score=49.15 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHhh
Q 038685 185 VVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-|+|+|.+|+|||||++.+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999877
No 221
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.82 E-value=0.02 Score=49.90 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=38.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEeCCCCHHHHHHHHHHH
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVGCEYYLHKVLDNIIKS 235 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~~~~~~~~l~~~Il~~ 235 (265)
.-.++-|.|.+|+||||||..+..+...+. ..++|++-+.+...+...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCCHHHHHHHHHHH
Confidence 456888999999999999999886543333 6788888335667777776654
No 222
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.80 E-value=0.01 Score=53.26 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+.-.+|+|+|+.|+|||||++.+...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44679999999999999999999873
No 223
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.80 E-value=0.0036 Score=53.05 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 224
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.80 E-value=0.0062 Score=47.31 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999764
No 225
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.79 E-value=0.0041 Score=51.12 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|.|.|+.|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999874
No 226
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.78 E-value=0.0098 Score=51.81 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCC-CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 168 EMKELLDLLIVGEP-SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 168 ~~~~l~~~L~~~~~-~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
....+.+++....+ ....+-++|.+|+|||+||+.+.+.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34445556654322 2466789999999999999999985
No 227
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.77 E-value=0.0056 Score=52.13 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.-.+++|+|..|+|||||++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 357999999999999999999876
No 228
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.77 E-value=0.0056 Score=51.33 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
...++.+.|.||+|||||+..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 468889999999999999999974
No 229
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.76 E-value=0.0064 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.-|.|+|.+|+|||||++.+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999998753
No 230
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.75 E-value=0.0074 Score=59.35 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=49.1
Q ss_pred CcccccHHHHHHHHHHHh----cC-------CCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe-----CC-
Q 038685 160 RNIVGLEDEMKELLDLLI----VG-------EPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG-----CE- 222 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~----~~-------~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~-----~~- 222 (265)
+++.|.++.+++|.+++. .. -...+-|-++|++|+|||+||+.|.+. ...+| +.|. ..
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~l~sk~ 278 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPEIMSKL 278 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHHHHSSC
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHHhhccc
Confidence 568888888888877652 21 123566789999999999999999985 33333 3343 22
Q ss_pred C-CHHHHHHHHHHHhCC
Q 038685 223 Y-YLHKVLDNIIKSVMP 238 (265)
Q Consensus 223 ~-~~~~l~~~Il~~l~~ 238 (265)
. .....++.+++....
T Consensus 279 ~gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEK 295 (806)
T ss_dssp TTHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHH
Confidence 2 235566777776643
No 231
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.74 E-value=0.009 Score=54.69 Aligned_cols=40 Identities=23% Similarity=0.142 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcC-------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 167 DEMKELLDLLIVG-------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 167 ~~~~~l~~~L~~~-------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-.++|.++|... ....++|.|+|.+|+||||++-.+-..
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455666666432 134789999999999999999988753
No 232
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.74 E-value=0.0052 Score=50.21 Aligned_cols=48 Identities=17% Similarity=0.045 Sum_probs=31.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEeCCCCHHHHHHHH
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVGCEYYLHKVLDNI 232 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~~~~~~~~l~~~I 232 (265)
-.+++|+|.+|+|||||++.+.....- .=..+.|+..+.....+...+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~ 70 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQA 70 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHH
Confidence 468999999999999999999864221 112355665333445554443
No 233
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.74 E-value=0.014 Score=51.75 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=35.3
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhcccccccC----CeeEEEe-C-CCCHHHHHHHHHHHh
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYF----YCRAWVG-C-EYYLHKVLDNIIKSV 236 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F----~~~~wV~-~-~~~~~~l~~~Il~~l 236 (265)
+.-.++.|+|..|+|||||++.+.......... ..++|+. . .+....+ ..+.+..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~ 189 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNR 189 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHc
Confidence 346899999999999999999998753212111 2458888 3 3444433 3344443
No 234
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.74 E-value=0.005 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.++|+|..|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999973
No 235
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.73 E-value=0.0052 Score=46.90 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|.++|.+|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999765
No 236
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.70 E-value=0.0073 Score=47.61 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|+|+|.+|+|||||.+.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 237
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.69 E-value=0.0074 Score=47.69 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
....-|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999875
No 238
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.69 E-value=0.0054 Score=50.87 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-.+|+|.|..|+|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999999874
No 239
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.68 E-value=0.038 Score=48.74 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=39.4
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhcccccc----cCCeeEEEe--CCCCHHHHHHHHHHHhCC
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNSNYMKN----YFYCRAWVG--CEYYLHKVLDNIIKSVMP 238 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~----~F~~~~wV~--~~~~~~~l~~~Il~~l~~ 238 (265)
+.-.++-|+|.+|+||||||..+........ .=..++|++ ..++...+.. +++.++.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~ 182 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNV 182 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 4567999999999999999999887532211 124688998 5567766653 4455443
No 240
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.68 E-value=0.0058 Score=46.97 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||++.+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 445789999999999999999764
No 241
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.67 E-value=0.0057 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|+|.|+.|+||||+++.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
No 242
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.64 E-value=0.0059 Score=52.10 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+++|+|..|+|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 243
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.63 E-value=0.0094 Score=54.55 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999988763
No 244
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.62 E-value=0.0076 Score=55.15 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|+|+|.+|+||||++..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999988774
No 245
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.61 E-value=0.0065 Score=46.52 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.-|.|+|.+|+|||||++.+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999997653
No 246
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.61 E-value=0.0053 Score=50.37 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..|.|.|+.|+||||+++.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 247
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.61 E-value=0.0062 Score=47.23 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||++.+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 446789999999999999999765
No 248
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.58 E-value=0.0069 Score=50.36 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999876
No 249
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.58 E-value=0.0066 Score=48.02 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
--|.|+|.+|+|||||++.+.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999997653
No 250
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.58 E-value=0.013 Score=50.85 Aligned_cols=24 Identities=33% Similarity=0.337 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|+++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999998864
No 251
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.57 E-value=0.026 Score=51.05 Aligned_cols=56 Identities=7% Similarity=-0.020 Sum_probs=36.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccc----cCCeeEEEe--CCCCHHHHHHHHHHHhCC
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKN----YFYCRAWVG--CEYYLHKVLDNIIKSVMP 238 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~----~F~~~~wV~--~~~~~~~l~~~Il~~l~~ 238 (265)
.-.++.|+|.+|+|||||+..+.-...... .-..++|+. ..++...+. .+.+.++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 356899999999999999997753211111 234688888 445655543 35555553
No 252
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.57 E-value=0.011 Score=57.74 Aligned_cols=47 Identities=15% Similarity=0.329 Sum_probs=37.6
Q ss_pred CcccccHHHHHHHHHHHhcC-------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG-------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~-------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..++|.+..++.+...+... ......+-++|.+|+|||+||+.+.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999888877532 122347889999999999999999874
No 253
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.57 E-value=0.0068 Score=50.02 Aligned_cols=22 Identities=18% Similarity=0.207 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|.|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999763
No 254
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.56 E-value=0.0072 Score=52.87 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+.+++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999964
No 255
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.56 E-value=0.0076 Score=54.82 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
....+++|+|..|+|||||.+.+..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3467999999999999999999988
No 256
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.56 E-value=0.0082 Score=46.04 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|.|+|.+|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 257
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.56 E-value=0.0067 Score=49.52 Aligned_cols=22 Identities=14% Similarity=0.071 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|.|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 258
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.55 E-value=0.0045 Score=53.54 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=18.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 259
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.55 E-value=0.0066 Score=52.96 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 457899999999999999999986
No 260
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.55 E-value=0.011 Score=56.42 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=35.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++++|.+..++.+...+..+ ..+.|+|.+|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899888877776666544 47889999999999999999884
No 261
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.54 E-value=0.0074 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|+|.|+.|+||||||+.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998874
No 262
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.53 E-value=0.0091 Score=46.00 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999999865
No 263
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.52 E-value=0.0069 Score=47.88 Aligned_cols=24 Identities=17% Similarity=-0.022 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||++.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 445789999999999999888753
No 264
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.49 E-value=0.012 Score=45.85 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+...|.|+|.+|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998763
No 265
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.49 E-value=0.0079 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 266
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.49 E-value=0.0068 Score=52.47 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999999999873
No 267
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.0074 Score=47.86 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
....|.|+|.+|+|||||+..+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999998753
No 268
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.46 E-value=0.0078 Score=46.32 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
--|.|+|.+|+|||||.+.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999987753
No 269
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.46 E-value=0.0078 Score=46.35 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
--|.|+|.+|+|||||.+.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34789999999999999999864
No 270
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.46 E-value=0.008 Score=46.19 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhhcc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
-|.|+|.+|+|||||.+.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987653
No 271
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.43 E-value=0.0082 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
--|.|+|.+|+|||||.+.+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 272
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.43 E-value=0.017 Score=50.94 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+..+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999999864
No 273
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.43 E-value=0.0069 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998653
No 274
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.41 E-value=0.0082 Score=46.74 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...-|.|+|.+|+|||||.+.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3566899999999999999988764
No 275
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.41 E-value=0.0087 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|+|+|.+|+||||++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999874
No 276
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.38 E-value=0.0092 Score=51.54 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...++|+|+|-||+||||+|-.+-.-
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH
Confidence 45789999999999999999887663
No 277
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.38 E-value=0.014 Score=54.51 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
...+|+|+|.+|+|||||+..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999884
No 278
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.37 E-value=0.0082 Score=47.13 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999875
No 279
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.37 E-value=0.016 Score=51.17 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
....+++|+|.+|+|||||.+.+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999974
No 280
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.36 E-value=0.0079 Score=46.81 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..--|.|+|.+|+|||||++.+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4566799999999999999999764
No 281
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.36 E-value=0.0089 Score=49.56 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|.|.|+.|+||||+|+.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999774
No 282
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.34 E-value=0.0089 Score=45.84 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|.|+|.+|+|||||.+.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999754
No 283
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.34 E-value=0.0099 Score=46.21 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...-|.|+|..|+|||||.+.+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998775
No 284
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.34 E-value=0.011 Score=46.44 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..--|.|+|.+|+|||||++.+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999999865
No 285
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.33 E-value=0.0054 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999976
No 286
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.32 E-value=0.0092 Score=46.38 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456799999999999999999764
No 287
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.31 E-value=0.0087 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.++.|+|.+|+|||||+..+...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998863
No 288
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.31 E-value=0.011 Score=46.45 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
--|.|+|.+|+|||||.+.+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998754
No 289
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.31 E-value=0.0087 Score=47.25 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||++.+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 455789999999999999998764
No 290
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.31 E-value=0.0095 Score=45.73 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
--|.|+|.+|+|||||.+.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998763
No 291
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.30 E-value=0.01 Score=46.13 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||++.+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 445789999999999999998764
No 292
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.30 E-value=0.0095 Score=46.25 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
...-|.|+|.+|+|||||.+.+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 35668899999999999999998754
No 293
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.30 E-value=0.0086 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|+.|+|||||.+.|..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 36899999999999999999987
No 294
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.30 E-value=0.0092 Score=45.91 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
--|.|+|.+|+|||||.+.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998754
No 295
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.29 E-value=0.032 Score=48.54 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=39.0
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccc---------cC-----CeeEEEe--CCCCHHHHHHHHHHHhCC
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKN---------YF-----YCRAWVG--CEYYLHKVLDNIIKSVMP 238 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~---------~F-----~~~~wV~--~~~~~~~l~~~Il~~l~~ 238 (265)
.-.++-|+|.+|+||||||..+.-+..... .. ..++|++ ..++...+.+ +++.++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 457899999999999999999886532211 11 4678888 5577777664 3455543
No 296
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.28 E-value=0.0092 Score=53.38 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46899999999999999999987
No 297
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.27 E-value=0.026 Score=47.83 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 171 ELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 171 ~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
++...+.........|.++|.+|+|||||...+.+..
T Consensus 27 ~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 27 ELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444344433345678899999999999999998754
No 298
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.27 E-value=0.023 Score=46.85 Aligned_cols=48 Identities=23% Similarity=0.160 Sum_probs=31.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEeCCCCHHHHHHHH
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVGCEYYLHKVLDNI 232 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~~~~~~~~l~~~I 232 (265)
-.++.|+|.+|+|||||+..+..... ..=..++|++-+.....+.+.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~~~~~~~~~~ 70 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEEHPVQVRQNM 70 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSSCHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccCCHHHHHHHH
Confidence 46889999999999999887765321 1123577777222344554443
No 299
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.27 E-value=0.011 Score=52.49 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhh
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
....+|+|+|.+|+|||||.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3478999999999999999999985
No 300
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.25 E-value=0.0053 Score=49.50 Aligned_cols=24 Identities=25% Similarity=0.120 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-..|+|+|..|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999998764
No 301
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.25 E-value=0.01 Score=45.76 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999653
No 302
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.25 E-value=0.011 Score=49.21 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999885
No 303
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.24 E-value=0.011 Score=46.19 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||++.+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999854
No 304
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.24 E-value=0.0097 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||.+.|..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36899999999999999999986
No 305
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.23 E-value=0.011 Score=46.94 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
....|.|+|.+|+|||||.+.+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998753
No 306
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.23 E-value=0.027 Score=47.51 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 171 ELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 171 ~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
++...+.....+...|+|+|.+|+|||||...+....
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4444444443446678999999999999999998754
No 307
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.20 E-value=0.0098 Score=46.94 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
...|.|+|..|+|||||++.+.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4567899999999999999998763
No 308
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.20 E-value=0.012 Score=45.90 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
..-|.|+|.+|+|||||++.+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4567899999999999999998653
No 309
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.19 E-value=0.012 Score=49.05 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhccc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNY 208 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~ 208 (265)
.-.+|.|.|+.|+||||+++.+.+.-.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999998533
No 310
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.19 E-value=0.014 Score=44.98 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
--|.|+|.+|+|||||++.+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999853
No 311
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.19 E-value=0.01 Score=46.61 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..--|.|+|.+|+|||||++.+.+.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456789999999999999998764
No 312
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.18 E-value=0.008 Score=52.22 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=19.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++| +|+|..|+|||||.+.++..
T Consensus 19 ~~I-~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTL-MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEE-EEEEETTSSHHHHHHHHHC-
T ss_pred EEE-EEECCCCCCHHHHHHHHhCC
Confidence 454 99999999999999998763
No 313
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.18 E-value=0.0096 Score=46.85 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhhcc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
-|.|+|.+|+|||||.+.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999988753
No 314
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.18 E-value=0.01 Score=47.07 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||++.+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999877654
No 315
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.16 E-value=0.027 Score=54.92 Aligned_cols=47 Identities=13% Similarity=0.288 Sum_probs=36.8
Q ss_pred CcccccHHHHHHHHHHHhcC-------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG-------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~-------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..++|.+..++.+...+... ......+-++|.+|+|||+||+.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 56889999988887776431 123457889999999999999999874
No 316
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.16 E-value=0.011 Score=46.97 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||++.+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 445789999999999999888764
No 317
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.16 E-value=0.011 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
++|+|.|-||+||||+|-.+-.-
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~ 24 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG 24 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHH
Confidence 58899999999999999888764
No 318
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.15 E-value=0.011 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.209 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||.+.|..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 46899999999999999999986
No 319
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.14 E-value=0.011 Score=46.19 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
--|.|+|.+|+|||||.+.+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999988754
No 320
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.14 E-value=0.011 Score=46.85 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|+|+|..|+|||||.+.+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456799999999999999998874
No 321
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.14 E-value=0.011 Score=46.42 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||++.+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999864
No 322
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.14 E-value=0.011 Score=47.21 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.-|+|+|.+|+|||||.+.+.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999986
No 323
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.13 E-value=0.011 Score=45.89 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
--|.|+|..|+|||||.+.+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999754
No 324
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.12 E-value=0.013 Score=47.49 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
....|.|+|.+|+|||||+..+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999998753
No 325
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.12 E-value=0.012 Score=46.02 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
--|.|+|.+|+|||||.+.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45689999999999999998764
No 326
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.12 E-value=0.012 Score=53.51 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|-|+|++|+||||+|+.+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999998874
No 327
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.12 E-value=0.011 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||.+.|..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46899999999999999999986
No 328
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.12 E-value=0.012 Score=48.32 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|-|.|++|+||+|.|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 329
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.11 E-value=0.012 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+.+|+|..|+|||||+..|+-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999863
No 330
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.11 E-value=0.034 Score=48.62 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=38.7
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhccccccc----CCeeEEEe--CCCCHHHHHHHHHHHhCC
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNY----FYCRAWVG--CEYYLHKVLDNIIKSVMP 238 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~----F~~~~wV~--~~~~~~~l~~~Il~~l~~ 238 (265)
.-.++-|+|.+|+||||||..+......... =..++|++ ..++...+.+ +++.++.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~ 167 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGL 167 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCC
Confidence 3468999999999999999998875322211 24688998 5567776653 4555543
No 331
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.11 E-value=0.011 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||.+.|..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 36899999999999999999987
No 332
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.11 E-value=0.0084 Score=48.21 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.-|+|+|.+|+|||||++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999975
No 333
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.10 E-value=0.012 Score=47.09 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
...-|.|+|.+|+|||||++.+.++.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 35568899999999999999997643
No 334
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.10 E-value=0.011 Score=52.97 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||.+.|..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 35899999999999999999986
No 335
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.09 E-value=0.012 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|.|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998874
No 336
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.08 E-value=0.012 Score=45.90 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||++.+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998764
No 337
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.07 E-value=0.012 Score=47.12 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...-|.|+|.+|+|||||++.+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3566899999999999999998764
No 338
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.05 E-value=0.015 Score=47.79 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 169 MKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 169 ~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+..++.. -++-+-+-|+|++|+||||+|..+.+.
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 4555555543 333456899999999999998887764
No 339
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.04 E-value=0.012 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||.+.|..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46899999999999999999986
No 340
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.04 E-value=0.01 Score=47.63 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.2
Q ss_pred CeEEEEEEcCCCCChhHHHHHHh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAY 204 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy 204 (265)
...-|.|+|.+|+|||||++.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999984
No 341
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.04 E-value=0.013 Score=45.69 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456799999999999999998764
No 342
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.02 E-value=0.013 Score=50.83 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+...|+|+|.+|+|||||.+.+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999875
No 343
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.00 E-value=0.013 Score=46.42 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|+|+|.+|+|||||++.+.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999875
No 344
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.013 Score=46.80 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||++.+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 445789999999999999999765
No 345
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.012 Score=46.75 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.--|+|+|..|+|||||.+.+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567999999999999999997643
No 346
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.99 E-value=0.017 Score=45.75 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
..--|.|+|..|+|||||.+.+.++.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35568999999999999999998754
No 347
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.97 E-value=0.012 Score=47.00 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||++.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 445689999999999999988773
No 348
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.97 E-value=0.013 Score=46.76 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.--|.|+|.+|+|||||++.+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999987753
No 349
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.97 E-value=0.013 Score=46.03 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
...-|.|+|.+|+|||||.+.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 35667899999999999999998643
No 350
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.97 E-value=0.015 Score=46.91 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
...|.|+|.+|+|||||.+.+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999998643
No 351
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.96 E-value=0.0094 Score=46.49 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
--|.|+|.+|+|||||++.+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 352
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.95 E-value=0.011 Score=52.52 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-..++|+|..|+|||||++.+..-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999998763
No 353
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.93 E-value=0.028 Score=51.16 Aligned_cols=42 Identities=14% Similarity=0.258 Sum_probs=28.5
Q ss_pred cccHHHHHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 163 VGLEDEMKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 163 vG~e~~~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+|.......++.-+.. ..-.+|+|+|..|+|||||++.+...
T Consensus 149 Lg~~~~~~~~L~~l~~--~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 149 LGMTAHNHDNFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SCCCHHHHHHHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3443333333333333 33578999999999999999998773
No 354
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.91 E-value=0.014 Score=46.11 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
..-|.|+|.+|+|||||++.+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999987653
No 355
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.90 E-value=0.014 Score=49.92 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.++|+|.|-||+||||+|-.+-.-
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~ 25 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA 25 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH
Confidence 468999999999999999888764
No 356
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.90 E-value=0.013 Score=46.47 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.--|.|+|.+|+|||||++.+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3457899999999999999998753
No 357
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.89 E-value=0.013 Score=51.95 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
-.+++|+|..|+|||||++.|.+..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999999953
No 358
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.88 E-value=0.014 Score=46.83 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
...-|.|+|.+|+|||||++.+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 35667899999999999999998753
No 359
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.88 E-value=0.0093 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
...-|.|+|.+|+|||||.+.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356678999999999999999875
No 360
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.88 E-value=0.015 Score=46.12 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 455789999999999999999864
No 361
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.88 E-value=0.015 Score=46.25 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567899999999999999998753
No 362
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.88 E-value=0.015 Score=52.08 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.-.+|+|+|..|+|||||++.+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999876
No 363
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.87 E-value=0.037 Score=49.30 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=28.1
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
+.-.++.|+|.+|+|||||+..+.....- .=..++|+.
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId 96 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFID 96 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEe
Confidence 34579999999999999999999875321 113456777
No 364
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.85 E-value=0.018 Score=50.07 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
+....|+|+|.+|+|||||...+....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 457899999999999999999998753
No 365
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.85 E-value=0.015 Score=46.11 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 445789999999999999998764
No 366
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.84 E-value=0.02 Score=46.97 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...-|.|+|.+|+|||||+..+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999875
No 367
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.84 E-value=0.015 Score=45.87 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||++.+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999999765
No 368
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.84 E-value=0.012 Score=49.77 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+...|.|.|..|+||||+++.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999998874
No 369
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.84 E-value=0.014 Score=46.50 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 455789999999999999988764
No 370
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.83 E-value=0.014 Score=53.16 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
++|+|..|+|||||++.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999874
No 371
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.82 E-value=0.014 Score=47.26 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||++.+.+.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999765
No 372
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.80 E-value=0.017 Score=50.64 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|.|+|+.|+||||||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 468999999999999999998763
No 373
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.80 E-value=0.016 Score=45.87 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|..|+|||||.+.+.+.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999754
No 374
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.80 E-value=0.017 Score=50.79 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-+++-|+|++|+||||||..+...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456789999999999999999874
No 375
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.80 E-value=0.0097 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||.+.|..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999987
No 376
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.79 E-value=0.016 Score=46.38 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||++.+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 566789999999999999999764
No 377
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.78 E-value=0.019 Score=45.52 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
...-|.|+|.+|+|||||.+.+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46778999999999999999988753
No 378
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.77 E-value=0.02 Score=50.63 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|.|+|+.|+|||||+..+...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 379
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.76 E-value=0.015 Score=46.14 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 345789999999999999999764
No 380
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.76 E-value=0.013 Score=47.76 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+|+|.|+.|+||||+++.+-.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998866
No 381
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.76 E-value=0.015 Score=46.70 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..--|.|+|.+|+|||||.+.+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3556789999999999999998754
No 382
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.75 E-value=0.014 Score=46.54 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||++.+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 455799999999999999999653
No 383
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.74 E-value=0.015 Score=46.96 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...-|+|+|.+|+|||||++.+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3556789999999999999988653
No 384
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.74 E-value=0.015 Score=46.35 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.--|.|+|..|+|||||++.+.++.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4457899999999999999998653
No 385
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.74 E-value=0.016 Score=46.31 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
..-|.|+|.+|+|||||.+.+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999998863
No 386
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.72 E-value=0.015 Score=52.38 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||.+.|..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 46899999999999999999986
No 387
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.71 E-value=0.017 Score=45.60 Aligned_cols=24 Identities=25% Similarity=0.088 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 566789999999999999999853
No 388
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.70 E-value=0.022 Score=45.87 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||++.+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 445689999999999999888764
No 389
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.69 E-value=0.019 Score=48.75 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|+++|.+|+|||||.+.+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999875
No 390
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.69 E-value=0.018 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...||.++|.+|+||||++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888753
No 391
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.69 E-value=0.016 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 392
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.66 E-value=0.018 Score=51.21 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+|+|+|..|+|||||.+.+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35999999999999999998865
No 393
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.66 E-value=0.0086 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||.+.|..
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36899999999999999999986
No 394
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.65 E-value=0.013 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35889999999999999999987
No 395
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.65 E-value=0.017 Score=46.58 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||++.+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999998764
No 396
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.64 E-value=0.015 Score=46.08 Aligned_cols=25 Identities=24% Similarity=0.124 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
..-|.|+|..|+|||||.+.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999998754
No 397
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.63 E-value=0.032 Score=55.26 Aligned_cols=47 Identities=17% Similarity=0.419 Sum_probs=36.8
Q ss_pred CcccccHHHHHHHHHHHhcC-----C--CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVG-----E--PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~-----~--~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..++|.+..+..+...+... + .....+-|+|..|+|||+||+.+.+.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35799999888888877431 1 22467889999999999999999874
No 398
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.62 E-value=0.018 Score=46.20 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||+..+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998864
No 399
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.61 E-value=0.016 Score=47.00 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||++.+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999999764
No 400
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.60 E-value=0.024 Score=46.97 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
...-|+|+|.+|+|||||.+.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678999999999999999998754
No 401
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.59 E-value=0.024 Score=49.55 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|.|+|+.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4578999999999999999999764
No 402
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.58 E-value=0.016 Score=45.49 Aligned_cols=24 Identities=25% Similarity=0.088 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|..|+|||||.+.+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999754
No 403
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.55 E-value=0.018 Score=45.63 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||++.+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999865
No 404
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.53 E-value=0.012 Score=46.15 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=10.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999988754
No 405
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.52 E-value=0.019 Score=46.02 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..-|.|+|.+|+|||||++.+.++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999999864
No 406
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.52 E-value=0.015 Score=51.28 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|+|..|+|||||++.+..-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 407
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.51 E-value=0.047 Score=49.77 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=33.2
Q ss_pred cccHHHHHHHHHHHhcC---------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 163 VGLEDEMKELLDLLIVG---------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 163 vG~e~~~~~l~~~L~~~---------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|.++-.+.+.+.+... .....-|+|+|.+|+|||||.+.+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 46677777777776421 123467899999999999999999765
No 408
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.015 Score=53.62 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.+..-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 468999999999999999999873
No 409
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.49 E-value=0.019 Score=46.08 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...-|.|+|.+|+|||||++.+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3567899999999999999998764
No 410
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.48 E-value=0.021 Score=52.05 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...+|+|+|.+|+||||++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999998874
No 411
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.47 E-value=0.019 Score=53.96 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|+|..|+|||||++.++.-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999984
No 412
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.46 E-value=0.026 Score=48.92 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+...|+|+|.+|+|||||.+.+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999875
No 413
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.45 E-value=0.031 Score=44.04 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=20.5
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
..--|.|+|.+|+|||||.+.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 345578999999999999999964
No 414
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.43 E-value=0.02 Score=46.08 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||++.+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 455789999999999999998764
No 415
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.42 E-value=0.019 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|+|..|+|||||++.++.-
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999973
No 416
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.41 E-value=0.021 Score=46.17 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|..|+|||||++.+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999998864
No 417
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.40 E-value=0.02 Score=49.64 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHh
Q 038685 169 MKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAY 204 (265)
Q Consensus 169 ~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy 204 (265)
.++|.+.+. -.+++++|..|+|||||.+.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 355555543 2578999999999999999997
No 418
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.40 E-value=0.025 Score=45.95 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||++.+.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 345679999999999999998765
No 419
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.38 E-value=0.022 Score=53.62 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.-.+++|+|..|+|||||++.+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 347999999999999999999987
No 420
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.37 E-value=0.02 Score=52.18 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHhhc
Q 038685 186 VAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 186 I~IvG~gGvGKTTLa~~vy~~ 206 (265)
|+|+|..|+|||||++.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999999874
No 421
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.36 E-value=0.045 Score=46.74 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 170 KELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 170 ~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-+..||....++.+-|-++|++|.|||+||..|.+.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3456666544344566889999999999999999873
No 422
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.35 E-value=0.045 Score=45.02 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=32.8
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEeCCCCHHHHHHHHH
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVGCEYYLHKVLDNII 233 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~~~~~~~~l~~~Il 233 (265)
.-.++-|.|.+|+||||||.++.-+. ....-..+++++-+.+...+.+.+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccCCHHHHHHHHH
Confidence 34678899999999999998865421 2222345666663345566655543
No 423
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.34 E-value=0.022 Score=50.71 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|+|..|+|||||++.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999999874
No 424
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.33 E-value=0.023 Score=45.57 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=19.5
Q ss_pred EEEEEE-cCCCCChhHHHHHHhhc
Q 038685 184 SVVAIV-GSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~Iv-G~gGvGKTTLa~~vy~~ 206 (265)
++|+|+ +-||+||||+|-.+-..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~ 25 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA 25 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH
Confidence 688998 67999999999888763
No 425
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.27 E-value=0.022 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 426
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.21 E-value=0.024 Score=46.43 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
..-|.|+|.+|+|||||.+.+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999999864
No 427
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.20 E-value=0.024 Score=52.48 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+++|+|..|+|||||++.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 8999999999999999999976
No 428
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.20 E-value=0.023 Score=51.99 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+++|+|..|+|||||++.|.+-
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999985
No 429
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.14 E-value=0.026 Score=47.19 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.-+||.|++|+||||+|+.+.+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 346799999999999999998763
No 430
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.12 E-value=0.025 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|+|..|+|||||++.+..-
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999974
No 431
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.12 E-value=0.022 Score=48.40 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
--|+|+|.+|+|||||...++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 34789999999999999997753
No 432
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.11 E-value=0.031 Score=46.80 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
...-|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678999999999999999997643
No 433
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.10 E-value=0.018 Score=54.84 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=32.5
Q ss_pred CcccccHHHHHHHHHHHhcCCCC---------eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLLIVGEPS---------LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L~~~~~~---------~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+.++|.+..+..+.-.|..+... -.-|-++|.+|+|||+||+.+.+.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 46788877666665545444210 014679999999999999999874
No 434
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.09 E-value=0.038 Score=48.99 Aligned_cols=37 Identities=22% Similarity=0.083 Sum_probs=27.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
.-.++.|+|.+|+||||||..+...... .=..++|++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~ 96 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFID 96 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEE
Confidence 4578999999999999999998764221 113466776
No 435
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.08 E-value=0.099 Score=45.85 Aligned_cols=39 Identities=13% Similarity=0.008 Sum_probs=29.0
Q ss_pred EEEEEcCCCCChhHHHHHHhhccccccc--CCeeEEEe--CCCCH
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNSNYMKNY--FYCRAWVG--CEYYL 225 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~~~v~~~--F~~~~wV~--~~~~~ 225 (265)
++-|+|.+|+|||||+-.+..... .. =..++||. ..++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~--~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM--RQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH--HHCTTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEeccchhhH
Confidence 789999999999999888776422 22 24678888 55554
No 436
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.05 E-value=0.028 Score=48.68 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 169 MKELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 169 ~~~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++..++. -.+++|+|..|+|||||.+.+...
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhccc
Confidence 345555553 247899999999999999999864
No 437
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.04 E-value=0.08 Score=48.46 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=35.7
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEeCCCCHHHHHHHHH
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVGCEYYLHKVLDNII 233 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~~~~~~~~l~~~Il 233 (265)
.-.++.|.|.+|+|||||+..+..+.... .=..++|++-+.+...+...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEMSAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCHHHHHHHHH
Confidence 35688999999999999999998853322 1135777773445566666654
No 438
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.03 E-value=0.013 Score=57.79 Aligned_cols=49 Identities=31% Similarity=0.292 Sum_probs=37.7
Q ss_pred CCCcccccHHHHHHHHHHHhcC-----------CCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 158 KKRNIVGLEDEMKELLDLLIVG-----------EPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 158 ~~~~~vG~e~~~~~l~~~L~~~-----------~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-.+++|.+..++.|.+.+... -.....+.++|.+|+||||||+.+.+.
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 3357889999988888776421 023456789999999999999999985
No 439
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.02 E-value=0.029 Score=50.79 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+|.|.|+.|+||||||..+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58999999999999999998763
No 440
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.01 E-value=0.046 Score=51.95 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.-.+++|+|..|.|||||++.+..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999986
No 441
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.01 E-value=0.033 Score=45.57 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
...+|+|+||.|+||+|+|..+-+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 357999999999999999999866
No 442
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.99 E-value=0.029 Score=45.73 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||++.+.+.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456799999999999999998764
No 443
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.98 E-value=0.092 Score=42.81 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
..|+|-|.-|+||||+++.+.+.-
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999853
No 444
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.97 E-value=0.028 Score=53.67 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|+|..|+|||||++.+..-
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 57999999999999999999873
No 445
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.94 E-value=0.024 Score=50.47 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|+|+|..|+|||||++.++..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3589999999999999998764
No 446
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.92 E-value=0.07 Score=44.62 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=27.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
-.+|.|.|..|+||||+++.+.+.-. ...+.+.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 46899999999999999999988533 23455444433
No 447
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.91 E-value=0.02 Score=54.05 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+|+|+|+.|+|||||++.+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 478999999999999999999874
No 448
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.90 E-value=0.029 Score=53.53 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||.+.+..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 46899999999999999999986
No 449
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.88 E-value=0.027 Score=48.55 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+..|+|+|..|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45778999999999999999999775
No 450
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.86 E-value=0.03 Score=50.00 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.+.+|+|+|.+|+|||||.+.+.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 46789999999999999999998753
No 451
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.85 E-value=0.032 Score=46.70 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.--|+++|.+|+|||||...+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4567899999999999999998753
No 452
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.84 E-value=0.14 Score=45.21 Aligned_cols=52 Identities=15% Similarity=-0.042 Sum_probs=37.1
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEeCCCCHHHHHHHHHHH
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVGCEYYLHKVLDNIIKS 235 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~~~~~~~~l~~~Il~~ 235 (265)
.-.++-|.|.+|+||||||..+..+... +=..++|++-+-+...+...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEms~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEMSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCCHHHHHHHHHHH
Confidence 3468889999999999999999875433 114567777445566777666554
No 453
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.83 E-value=0.036 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhh
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
...+|-++|++|.||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999865
No 454
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.79 E-value=0.052 Score=48.28 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=27.5
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG 220 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~ 220 (265)
.-.++-|.|.+|+||||||..+...... .=..++|++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid 98 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFID 98 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEe
Confidence 4568899999999999999988764321 123567777
No 455
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.79 E-value=0.04 Score=45.33 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-..|.|-|..|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 456
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.77 E-value=0.058 Score=49.40 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=29.5
Q ss_pred CcccccHHHHHHHHHHH----hcCCCCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 160 RNIVGLEDEMKELLDLL----IVGEPSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 160 ~~~vG~e~~~~~l~~~L----~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+-+......+.+..+ ..++ ..+-|.|.+|+||||++..+...
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHH
Confidence 33444544444444433 3323 38889999999999999998874
No 457
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.74 E-value=0.032 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.263 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 46899999999999999999987
No 458
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.73 E-value=0.16 Score=46.35 Aligned_cols=58 Identities=16% Similarity=-0.054 Sum_probs=39.5
Q ss_pred cCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEeCCCCHHHHHHHHHHHh
Q 038685 178 VGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVGCEYYLHKVLDNIIKSV 236 (265)
Q Consensus 178 ~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~~~~~~~~l~~~Il~~l 236 (265)
.+=..-.++-|.|.+|+||||||..+..+.... +=..++|++-+-+...+...++...
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEMPAAQLTLRMMCSE 252 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCCCHHHHHHHHHHHH
Confidence 443345688899999999999999988753321 1135778873355667777766543
No 459
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.72 E-value=0.039 Score=47.10 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|+++|.+|+|||||.+.+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 456899999999999999999874
No 460
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.72 E-value=0.018 Score=46.73 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
....|+|+|..|+|||||.+.+.+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998864
No 461
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.70 E-value=0.042 Score=46.44 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
...|+++|.+|+|||||...+...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 456899999999999999999874
No 462
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.69 E-value=0.044 Score=42.26 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAY 204 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy 204 (265)
..+..|+|..|.|||||...|+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999999886
No 463
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.68 E-value=0.015 Score=46.42 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=4.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
--|.|+|.+|+|||||.+.+.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999988765
No 464
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.66 E-value=0.036 Score=46.82 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
+.|+++|.+|+|||||.+.+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999875
No 465
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.66 E-value=0.036 Score=45.05 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-.+|+|.|+.|+||||+++.+-..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 358999999999999999998774
No 466
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.66 E-value=0.032 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999986
No 467
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.63 E-value=0.032 Score=53.00 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 468
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.61 E-value=0.037 Score=45.48 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-|.|+|-+|||||+|+....++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3579999999999999987654
No 469
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.61 E-value=0.047 Score=48.64 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.6
Q ss_pred CCeEEEEEEc-CCCCChhHHHHHHhh
Q 038685 181 PSLSVVAIVG-SSGFDKTDFAGEAYN 205 (265)
Q Consensus 181 ~~~~VI~IvG-~gGvGKTTLa~~vy~ 205 (265)
...++|+|+| -||+||||+|-.+-.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAI 166 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHH
Confidence 4689999996 899999999988765
No 470
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.59 E-value=0.035 Score=46.22 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=18.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
-..|.|-|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999985
No 471
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.59 E-value=0.038 Score=45.00 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=18.5
Q ss_pred EEEEE-cCCCCChhHHHHHHhhc
Q 038685 185 VVAIV-GSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~Iv-G~gGvGKTTLa~~vy~~ 206 (265)
+|+|+ +-||+||||++-.+-.-
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~ 24 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAY 24 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHH
Confidence 67776 67999999999998764
No 472
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.58 E-value=0.05 Score=45.12 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
....|.|.|..|+||||+++.+.+.-
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999853
No 473
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.57 E-value=0.035 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 474
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.56 E-value=0.039 Score=48.85 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 181 PSLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 181 ~~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.....|+|+|.+|+|||||.+.+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999874
No 475
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.55 E-value=0.05 Score=44.50 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..|.|.|..|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999998764
No 476
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.52 E-value=0.038 Score=46.02 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|-+.|.||+||||+|-.+-..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3668899999999998877764
No 477
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.51 E-value=0.018 Score=46.61 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|..|+|||||.+.+.+.
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998853
No 478
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.50 E-value=0.049 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
-.+++|+|..|+|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 479
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.46 E-value=0.045 Score=50.37 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..+|-++|++|+||||+++.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999998764
No 480
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.45 E-value=0.026 Score=46.56 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|+|.|-||+||||+|-.+-..
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~ 23 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKI 23 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHH
Confidence 3778999999999999998764
No 481
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.39 E-value=0.089 Score=44.72 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
...-|+|+|.+|+|||||...+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 46689999999999999999998753
No 482
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.37 E-value=0.085 Score=48.86 Aligned_cols=52 Identities=17% Similarity=0.075 Sum_probs=39.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe---CCCCHHHHHHHHHHH
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG---CEYYLHKVLDNIIKS 235 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~---~~~~~~~l~~~Il~~ 235 (265)
-.-++|.|..|+|||+|++.+.++. .+.|-++++++- +.-...++.+++.+.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 4567999999999999999988751 234557777776 455677888888764
No 483
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.36 E-value=0.022 Score=46.29 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=18.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHh
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAY 204 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy 204 (265)
.--|.|+|.+|+|||||++.+.
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4467899999999999999833
No 484
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.34 E-value=0.13 Score=46.99 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=35.2
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEeCCCCHHHHHHHHHHH
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVGCEYYLHKVLDNIIKS 235 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~~~~~~~~l~~~Il~~ 235 (265)
.-.++-|.|.+|+||||||..+..+...++ ..++|++-+-+...+...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSSCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCCCHHHHHHHHHHH
Confidence 456888999999999999999987643332 3677787223444455555443
No 485
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.34 E-value=0.016 Score=50.59 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.+++|+|..|+|||||.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 58899999999999999999763
No 486
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.34 E-value=0.079 Score=48.87 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=43.1
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe---CCCCHHHHHHHHHHH
Q 038685 171 ELLDLLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG---CEYYLHKVLDNIIKS 235 (265)
Q Consensus 171 ~l~~~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~---~~~~~~~l~~~Il~~ 235 (265)
+.++.|.-- .+-.-++|+|..|+|||||++.+.++. .+.|-++++++- +.-...++.+++.+.
T Consensus 142 r~ID~l~pi-gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY-AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE-ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc-ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 455655321 124578999999999999999987752 234446666665 445577888888765
No 487
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.29 E-value=0.045 Score=43.82 Aligned_cols=21 Identities=19% Similarity=-0.031 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCChhHHHHHHh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAY 204 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy 204 (265)
.++-|+|..|+||||++..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999984443
No 488
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.28 E-value=0.051 Score=45.67 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhh
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYN 205 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~ 205 (265)
.+|+|.|+.|+||||+++.+-.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~ 23 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 489
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.25 E-value=0.046 Score=45.94 Aligned_cols=28 Identities=14% Similarity=-0.019 Sum_probs=21.6
Q ss_pred CCeEEEEEE-cCCCCChhHHHHHHhhccc
Q 038685 181 PSLSVVAIV-GSSGFDKTDFAGEAYNSNY 208 (265)
Q Consensus 181 ~~~~VI~Iv-G~gGvGKTTLa~~vy~~~~ 208 (265)
...++|+|+ |-||+||||+|-.+-.--.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la 53 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS 53 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH
Confidence 357899996 5699999999998877433
No 490
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=92.36 E-value=0.016 Score=46.54 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhhc
Q 038685 183 LSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 183 ~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 445689999999999999877653
No 491
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.19 E-value=0.097 Score=47.60 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=33.1
Q ss_pred cccHHHHHHHHHHHhcC-----CCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 163 VGLEDEMKELLDLLIVG-----EPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 163 vG~e~~~~~l~~~L~~~-----~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.|.++-.+.+.+.+... ++...-|+|+|.+|+|||||...+....
T Consensus 150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 35666666666666432 1245678999999999999999998754
No 492
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.15 E-value=0.044 Score=51.22 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=0.0
Q ss_pred EEEEEcCCCCChhHHHHHH
Q 038685 185 VVAIVGSSGFDKTDFAGEA 203 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~v 203 (265)
+++|+|..|+|||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
No 493
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.12 E-value=0.045 Score=48.93 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhhc
Q 038685 185 VVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 185 VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.|+|+|.+|+|||||.+.+.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999998764
No 494
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=93.11 E-value=0.096 Score=46.92 Aligned_cols=26 Identities=19% Similarity=0.010 Sum_probs=21.6
Q ss_pred CCCeEEEEEE-cCCCCChhHHHHHHhh
Q 038685 180 EPSLSVVAIV-GSSGFDKTDFAGEAYN 205 (265)
Q Consensus 180 ~~~~~VI~Iv-G~gGvGKTTLa~~vy~ 205 (265)
....++|+|+ |-||+||||+|-.+-.
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~ 131 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAH 131 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHH
Confidence 3468899998 7799999999888765
No 495
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=93.11 E-value=0.09 Score=49.93 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=27.1
Q ss_pred HHhcCCCCeEEEEEEcCCCCChhHHHHHHhhcc
Q 038685 175 LLIVGEPSLSVVAIVGSSGFDKTDFAGEAYNSN 207 (265)
Q Consensus 175 ~L~~~~~~~~VI~IvG~gGvGKTTLa~~vy~~~ 207 (265)
.|..-+....+|+|+|.+|+||+||...+....
T Consensus 30 ~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 30 ILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHhccCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 344445568999999999999999999998753
No 496
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.10 E-value=0.045 Score=49.34 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCChhHHHHHHhhc
Q 038685 182 SLSVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 182 ~~~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-..|+|+|.+|+|||||.+.+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468899999999999999999873
No 497
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.09 E-value=0.047 Score=47.27 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
.-|.++|.+|+|||||.+.+++.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998765
No 498
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.06 E-value=0.062 Score=49.57 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=33.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhhcccccccCCeeEEEe---CCCCHHHHHHHHHH
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNSNYMKNYFYCRAWVG---CEYYLHKVLDNIIK 234 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~~~v~~~F~~~~wV~---~~~~~~~l~~~Il~ 234 (265)
..++|+|..|+|||||++.+..+.... +-++++++- ++-...++..++.+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhh
Confidence 358899999999999999998753222 224455555 33345666666654
No 499
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.02 E-value=0.047 Score=50.95 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhhc
Q 038685 184 SVVAIVGSSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG~gGvGKTTLa~~vy~~ 206 (265)
..|+|+|..|+|||||++.+..-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999873
No 500
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.98 E-value=0.059 Score=44.79 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=18.9
Q ss_pred EEEEEEc-CCCCChhHHHHHHhhc
Q 038685 184 SVVAIVG-SSGFDKTDFAGEAYNS 206 (265)
Q Consensus 184 ~VI~IvG-~gGvGKTTLa~~vy~~ 206 (265)
++|+|+| -||+||||+|-.+-.-
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~ 26 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATG 26 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCcHHHHHHHHHHH
Confidence 6788865 5899999999988763
Done!