Query 038691
Match_columns 221
No_of_seqs 144 out of 987
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 13:37:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 1E-68 2.2E-73 413.3 21.0 217 1-218 1-217 (217)
2 KOG0862 Synaptobrevin/VAMP-lik 100.0 4.8E-33 1E-37 219.5 21.0 187 3-191 2-199 (216)
3 KOG0861 SNARE protein YKT6, sy 100.0 2.6E-32 5.6E-37 207.3 17.0 175 1-182 1-193 (198)
4 KOG0860 Synaptobrevin/VAMP-lik 100.0 2.2E-29 4.8E-34 180.4 11.9 91 121-211 24-114 (116)
5 PF00957 Synaptobrevin: Synapt 100.0 1.2E-28 2.6E-33 174.0 12.0 88 125-212 2-89 (89)
6 COG5143 SNC1 Synaptobrevin/VAM 99.9 2.2E-23 4.9E-28 162.5 16.0 181 1-187 1-190 (190)
7 PF13774 Longin: Regulated-SNA 99.8 1.7E-18 3.6E-23 120.5 10.7 81 28-110 1-82 (83)
8 COG5143 SNC1 Synaptobrevin/VAM 97.6 0.00031 6.7E-09 55.5 7.2 81 127-207 95-175 (190)
9 PF00957 Synaptobrevin: Synapt 97.2 0.01 2.3E-07 41.3 10.7 76 126-205 10-85 (89)
10 PF03908 Sec20: Sec20; InterP 96.9 0.034 7.3E-07 39.1 11.3 78 130-207 5-89 (92)
11 KOG0811 SNARE protein PEP12/VA 96.7 0.023 5E-07 47.7 10.3 56 126-181 180-239 (269)
12 COG5074 t-SNARE complex subuni 96.4 0.043 9.3E-07 44.7 9.5 78 126-203 185-265 (280)
13 KOG0810 SNARE protein Syntaxin 95.9 0.1 2.2E-06 44.6 10.4 73 126-200 206-281 (297)
14 KOG0860 Synaptobrevin/VAMP-lik 95.4 0.37 8E-06 35.1 9.9 56 149-207 59-114 (116)
15 PF04086 SRP-alpha_N: Signal r 93.8 0.19 4.2E-06 42.4 6.3 54 42-95 17-72 (279)
16 PF09753 Use1: Membrane fusion 93.0 1.5 3.3E-05 36.4 10.5 35 164-200 202-239 (251)
17 PF09426 Nyv1_N: Vacuolar R-SN 92.4 0.24 5.1E-06 36.9 4.1 45 42-86 62-110 (141)
18 COG5325 t-SNARE complex subuni 92.0 2.7 5.9E-05 35.3 10.4 64 126-189 195-262 (283)
19 PF03908 Sec20: Sec20; InterP 91.6 3.4 7.3E-05 28.8 11.2 73 137-209 5-87 (92)
20 PF10779 XhlA: Haemolysin XhlA 91.6 2.8 6.1E-05 27.8 9.2 51 153-206 19-69 (71)
21 PF05478 Prominin: Prominin; 91.1 2.3 5E-05 41.5 10.6 16 201-216 427-442 (806)
22 TIGR01149 mtrG N5-methyltetrah 90.9 1.8 4E-05 28.4 6.6 28 154-183 19-46 (70)
23 PF03904 DUF334: Domain of unk 90.9 4.5 9.8E-05 33.0 10.3 53 110-167 78-133 (230)
24 COG5074 t-SNARE complex subuni 90.7 1.4 3.1E-05 36.1 7.3 30 182-211 247-276 (280)
25 PF04099 Sybindin: Sybindin-li 90.6 4.9 0.00011 30.5 10.0 87 30-117 46-141 (142)
26 PF04210 MtrG: Tetrahydrometha 90.0 3.6 7.7E-05 27.1 7.4 30 153-184 18-47 (70)
27 KOG0938 Adaptor complexes medi 89.4 12 0.00026 32.6 12.2 115 4-125 5-122 (446)
28 PF01217 Clat_adaptor_s: Clath 89.0 7.9 0.00017 29.0 11.2 50 44-93 47-96 (141)
29 PRK09400 secE preprotein trans 89.0 1.9 4.2E-05 27.8 5.6 54 156-209 3-56 (61)
30 PTZ00478 Sec superfamily; Prov 89.0 1.6 3.5E-05 29.7 5.5 59 150-208 10-68 (81)
31 PRK01026 tetrahydromethanopter 87.9 4.8 0.0001 27.1 7.0 29 154-184 22-50 (77)
32 KOG0781 Signal recognition par 86.6 3.4 7.4E-05 37.7 7.6 87 4-94 4-96 (587)
33 KOG1983 Tomosyn and related SN 86.2 0.79 1.7E-05 45.7 3.8 42 144-185 945-986 (993)
34 KOG3385 V-SNARE [Intracellular 85.8 4.5 9.8E-05 29.5 6.5 73 126-203 36-112 (118)
35 PF06789 UPF0258: Uncharacteri 85.6 0.46 9.9E-06 36.2 1.4 33 176-211 123-155 (159)
36 PF06008 Laminin_I: Laminin Do 82.4 18 0.00039 30.2 10.0 56 109-169 180-235 (264)
37 PF04628 Sedlin_N: Sedlin, N-t 82.3 15 0.00032 27.3 8.5 111 7-117 1-131 (132)
38 KOG3202 SNARE protein TLG1/Syn 80.5 32 0.00069 28.5 10.8 25 128-152 139-163 (235)
39 COG4064 MtrG Tetrahydromethano 80.3 10 0.00023 24.9 5.9 28 154-183 22-49 (75)
40 TIGR00327 secE_euk_arch protei 79.8 5.8 0.00013 25.6 4.7 47 163-209 6-52 (61)
41 PF13800 Sigma_reg_N: Sigma fa 79.1 4 8.7E-05 28.6 4.2 13 177-189 5-17 (96)
42 PF11657 Activator-TraM: Trans 78.5 27 0.00059 26.6 12.4 69 68-146 20-89 (144)
43 KOG0810 SNARE protein Syntaxin 76.8 13 0.00028 31.9 7.3 44 168-211 244-289 (297)
44 KOG0812 SNARE protein SED5/Syn 76.0 35 0.00075 29.1 9.4 43 126-168 227-272 (311)
45 KOG1666 V-SNARE [Intracellular 75.9 41 0.0009 27.3 11.0 23 181-203 190-212 (220)
46 KOG3251 Golgi SNAP receptor co 75.8 41 0.00089 27.3 9.5 57 145-203 137-204 (213)
47 KOG3498 Preprotein translocase 75.2 12 0.00026 24.3 5.0 54 155-208 3-56 (67)
48 KOG3369 Transport protein part 75.1 39 0.00084 26.7 8.8 81 33-117 111-196 (199)
49 KOG0809 SNARE protein TLG2/Syn 74.5 20 0.00044 30.5 7.7 78 126-206 218-299 (305)
50 PF13800 Sigma_reg_N: Sigma fa 73.7 6.5 0.00014 27.5 4.1 21 178-198 3-23 (96)
51 PF04799 Fzo_mitofusin: fzo-li 73.3 34 0.00074 26.9 8.2 50 127-176 110-159 (171)
52 PF03904 DUF334: Domain of unk 72.7 38 0.00083 27.8 8.6 20 194-213 154-173 (230)
53 PF09889 DUF2116: Uncharacteri 72.7 16 0.00035 23.4 5.3 16 189-204 38-53 (59)
54 PF08006 DUF1700: Protein of u 71.8 46 0.00099 26.0 9.9 11 79-89 5-15 (181)
55 PHA02557 22 prohead core prote 71.8 28 0.00062 29.2 7.9 91 77-167 89-188 (271)
56 KOG3894 SNARE protein Syntaxin 68.9 74 0.0016 27.5 9.9 51 107-162 215-268 (316)
57 cd07912 Tweety_N N-terminal do 64.6 61 0.0013 29.2 9.1 40 106-147 105-144 (418)
58 PRK10884 SH3 domain-containing 63.8 77 0.0017 25.6 11.6 22 152-173 130-151 (206)
59 KOG3208 SNARE protein GS28 [In 63.7 81 0.0018 25.8 9.5 12 197-208 218-229 (231)
60 PF09753 Use1: Membrane fusion 61.5 87 0.0019 25.9 9.1 11 80-90 114-124 (251)
61 PF13124 DUF3963: Protein of u 61.2 16 0.00035 20.8 3.1 19 183-201 17-35 (40)
62 PF05568 ASFV_J13L: African sw 61.2 13 0.00029 28.3 3.6 23 189-211 30-52 (189)
63 KOG1326 Membrane-associated pr 61.1 11 0.00023 37.4 3.9 44 168-211 1049-1092(1105)
64 KOG0811 SNARE protein PEP12/VA 60.8 93 0.002 26.3 9.1 26 142-167 168-193 (269)
65 PF03302 VSP: Giardia variant- 58.5 6.2 0.00013 35.3 1.8 13 201-213 383-395 (397)
66 PF11337 DUF3139: Protein of u 58.1 12 0.00025 25.6 2.8 9 203-211 19-27 (85)
67 PF03839 Sec62: Translocation 57.9 13 0.00028 30.6 3.4 13 201-213 161-173 (224)
68 PF12352 V-SNARE_C: Snare regi 55.3 52 0.0011 20.9 8.4 58 126-183 8-65 (66)
69 KOG0859 Synaptobrevin/VAMP-lik 55.2 46 0.001 26.8 5.9 79 133-211 125-207 (217)
70 COG5122 TRS23 Transport protei 54.5 83 0.0018 23.0 8.8 83 31-117 45-132 (134)
71 PHA02650 hypothetical protein; 53.1 12 0.00025 25.4 1.9 14 189-202 50-63 (81)
72 KOG2927 Membrane component of 52.6 14 0.00031 32.2 3.0 29 133-161 126-154 (372)
73 PF05739 SNARE: SNARE domain; 52.3 56 0.0012 20.4 8.4 42 126-167 4-45 (63)
74 KOG2678 Predicted membrane pro 51.9 1E+02 0.0022 25.4 7.4 17 162-178 195-211 (244)
75 PF07798 DUF1640: Protein of u 51.6 1.1E+02 0.0025 23.8 11.7 25 126-150 80-104 (177)
76 PF07204 Orthoreo_P10: Orthore 51.2 9.9 0.00021 26.7 1.4 23 189-211 41-63 (98)
77 PRK10573 type IV pilin biogene 51.1 1.8E+02 0.0038 25.8 10.2 17 73-89 57-73 (399)
78 PF00558 Vpu: Vpu protein; In 50.2 20 0.00044 24.5 2.8 21 191-211 6-26 (81)
79 KOG2635 Medium subunit of clat 50.1 2E+02 0.0044 26.2 11.6 37 42-78 44-80 (512)
80 PF09680 Tiny_TM_bacill: Prote 50.0 14 0.0003 19.0 1.5 6 202-207 14-19 (24)
81 PRK10600 nitrate/nitrite senso 49.6 1.9E+02 0.004 26.8 10.2 20 133-152 68-87 (569)
82 PF06072 Herpes_US9: Alphaherp 49.0 57 0.0012 20.8 4.5 8 168-175 9-16 (60)
83 PHA02844 putative transmembran 49.0 16 0.00034 24.5 2.1 8 193-200 53-60 (75)
84 PF05781 MRVI1: MRVI1 protein; 48.8 60 0.0013 30.1 6.4 20 202-221 488-507 (538)
85 KOG4782 Predicted membrane pro 48.3 56 0.0012 22.9 4.8 40 164-203 28-71 (108)
86 PF14575 EphA2_TM: Ephrin type 48.2 26 0.00056 23.5 3.1 18 194-211 6-23 (75)
87 PF12751 Vac7: Vacuolar segreg 48.2 18 0.00039 32.1 2.9 30 181-210 294-323 (387)
88 PF06837 Fijivirus_P9-2: Fijiv 48.1 39 0.00085 26.9 4.5 37 131-167 21-59 (214)
89 PHA03011 hypothetical protein; 47.7 78 0.0017 22.5 5.5 58 107-166 61-118 (120)
90 PF08999 SP_C-Propep: Surfacta 47.1 34 0.00074 23.3 3.5 22 188-209 32-53 (93)
91 PF02439 Adeno_E3_CR2: Adenovi 47.0 30 0.00066 20.0 2.8 6 195-200 9-14 (38)
92 PF15339 Afaf: Acrosome format 45.6 31 0.00066 27.1 3.5 22 190-211 129-151 (200)
93 PF01102 Glycophorin_A: Glycop 45.6 28 0.0006 25.8 3.2 16 191-206 66-81 (122)
94 PF03164 Mon1: Trafficking pro 45.3 1.4E+02 0.003 26.9 8.2 68 25-93 37-104 (415)
95 KOG2678 Predicted membrane pro 45.1 97 0.0021 25.5 6.4 21 167-187 193-213 (244)
96 PF09889 DUF2116: Uncharacteri 44.5 82 0.0018 20.1 4.8 14 189-202 41-54 (59)
97 PHA03054 IMV membrane protein; 43.4 21 0.00045 23.6 2.0 12 189-200 49-60 (72)
98 COG2443 Sss1 Preprotein transl 42.5 96 0.0021 20.3 5.9 39 169-207 17-55 (65)
99 PF12575 DUF3753: Protein of u 42.3 35 0.00075 22.8 2.9 8 135-142 24-31 (72)
100 KOG2740 Clathrin-associated pr 42.3 78 0.0017 28.0 5.8 48 46-93 49-96 (418)
101 PF10498 IFT57: Intra-flagella 42.2 1.8E+02 0.0038 25.8 8.2 35 159-193 317-353 (359)
102 PF13980 UPF0370: Uncharacteri 42.2 31 0.00068 22.0 2.5 16 185-200 3-18 (63)
103 PF00482 T2SF: Type II secreti 41.6 1E+02 0.0023 21.2 5.8 13 107-119 30-42 (124)
104 PF02038 ATP1G1_PLM_MAT8: ATP1 41.6 54 0.0012 20.2 3.4 18 186-203 11-28 (50)
105 PF01601 Corona_S2: Coronaviru 41.5 8.4 0.00018 36.0 -0.1 14 106-119 480-493 (610)
106 PF11675 DUF3271: Protein of u 41.4 1E+02 0.0022 25.5 6.1 50 2-54 30-79 (249)
107 COG1422 Predicted membrane pro 40.9 1.9E+02 0.0042 23.3 10.0 44 126-173 72-117 (201)
108 PF06008 Laminin_I: Laminin Do 40.5 1.3E+02 0.0028 25.0 6.9 19 100-119 18-36 (264)
109 smart00096 UTG Uteroglobin. 39.9 41 0.00089 22.2 3.0 39 113-151 22-61 (69)
110 PF01708 Gemini_mov: Geminivir 39.8 14 0.0003 25.7 0.7 28 185-212 33-60 (91)
111 PF05478 Prominin: Prominin; 39.6 3.3E+02 0.0072 26.8 10.5 45 168-212 397-441 (806)
112 cd00193 t_SNARE Soluble NSF (N 39.0 88 0.0019 18.9 6.6 44 126-169 6-49 (60)
113 PF14575 EphA2_TM: Ephrin type 38.8 27 0.00058 23.4 2.0 25 195-219 3-27 (75)
114 PF04272 Phospholamban: Phosph 38.7 87 0.0019 18.8 3.9 19 190-208 32-50 (52)
115 PF05393 Hum_adeno_E3A: Human 38.6 31 0.00066 23.9 2.3 10 202-211 45-54 (94)
116 PTZ00382 Variant-specific surf 38.4 17 0.00036 25.7 1.0 11 202-212 83-93 (96)
117 PHA02975 hypothetical protein; 38.1 44 0.00095 22.0 2.8 9 192-200 48-56 (69)
118 TIGR03044 PS_II_psb27 photosys 38.0 1.7E+02 0.0038 22.0 7.4 62 75-137 62-127 (135)
119 TIGR01478 STEVOR variant surfa 37.9 31 0.00067 29.3 2.7 25 192-216 266-290 (295)
120 PF10392 COG5: Golgi transport 37.7 1.7E+02 0.0036 21.6 8.1 58 126-183 33-94 (132)
121 PF14004 DUF4227: Protein of u 37.5 50 0.0011 22.0 3.1 24 184-207 2-25 (71)
122 PF14992 TMCO5: TMCO5 family 37.4 2.6E+02 0.0056 23.8 11.3 19 179-197 208-226 (280)
123 PF10031 DUF2273: Small integr 37.2 43 0.00094 20.7 2.6 14 184-197 2-15 (51)
124 PRK13664 hypothetical protein; 37.1 58 0.0012 20.7 3.1 18 185-202 3-20 (62)
125 PTZ00370 STEVOR; Provisional 36.5 33 0.00073 29.2 2.7 24 193-216 263-286 (296)
126 PF14914 LRRC37AB_C: LRRC37A/B 36.4 37 0.0008 26.0 2.6 19 193-211 121-139 (154)
127 PF14712 Snapin_Pallidin: Snap 36.3 1.1E+02 0.0024 20.8 5.0 26 155-180 65-90 (92)
128 PF06143 Baculo_11_kDa: Baculo 35.6 72 0.0016 22.0 3.7 12 183-194 30-41 (84)
129 cd00633 Secretoglobin Secretog 35.5 67 0.0014 20.7 3.5 42 110-151 17-59 (67)
130 PF07172 GRP: Glycine rich pro 35.3 41 0.00088 23.7 2.6 16 190-205 4-19 (95)
131 PF02009 Rifin_STEVOR: Rifin/s 34.9 36 0.00078 29.3 2.7 8 13-20 19-26 (299)
132 COG4327 Predicted membrane pro 34.8 67 0.0015 22.6 3.5 34 176-209 5-38 (101)
133 PF07296 TraP: TraP protein; 34.7 1.8E+02 0.0038 23.3 6.2 44 163-207 6-49 (202)
134 PF06695 Sm_multidrug_ex: Puta 34.3 1.4E+02 0.0031 21.7 5.6 26 169-196 54-79 (121)
135 smart00397 t_SNARE Helical reg 33.8 1.2E+02 0.0025 18.7 7.0 44 126-169 12-55 (66)
136 PF05957 DUF883: Bacterial pro 33.7 1.6E+02 0.0034 20.2 9.9 17 133-149 27-43 (94)
137 PRK10299 PhoPQ regulatory prot 33.5 60 0.0013 19.6 2.7 25 187-211 2-28 (47)
138 KOG3230 Vacuolar assembly/sort 33.5 1.5E+02 0.0032 23.9 5.7 23 131-153 131-153 (224)
139 KOG1666 V-SNARE [Intracellular 33.3 2.7E+02 0.0058 22.8 10.8 46 165-211 171-216 (220)
140 PF05399 EVI2A: Ectropic viral 32.7 37 0.0008 27.6 2.2 17 189-205 126-142 (227)
141 PF01099 Uteroglobin: Uteroglo 32.6 51 0.0011 21.4 2.6 42 110-151 17-59 (67)
142 PF13908 Shisa: Wnt and FGF in 32.4 22 0.00047 27.8 1.0 18 194-211 80-97 (179)
143 KOG3287 Membrane trafficking p 32.2 2.9E+02 0.0062 22.7 7.3 59 144-202 153-216 (236)
144 PF06024 DUF912: Nucleopolyhed 32.0 26 0.00056 24.9 1.2 7 201-207 76-82 (101)
145 PF11166 DUF2951: Protein of u 32.0 1.8E+02 0.004 20.4 9.1 20 129-148 31-50 (98)
146 PHA03164 hypothetical protein; 31.8 71 0.0015 21.5 3.1 21 189-209 58-78 (88)
147 PF00517 GP41: Retroviral enve 31.7 1.7E+02 0.0037 23.6 6.0 17 130-146 105-121 (204)
148 PHA02692 hypothetical protein; 31.6 39 0.00085 22.3 1.9 8 135-142 24-31 (70)
149 PLN03223 Polycystin cation cha 31.5 88 0.0019 32.7 5.0 42 126-167 1581-1622(1634)
150 cd01617 DCX Ubiquitin-like dom 31.5 1.6E+02 0.0035 19.6 6.1 55 18-72 21-78 (80)
151 PF03607 DCX: Doublecortin; I 31.4 67 0.0014 20.3 3.0 48 23-71 9-58 (60)
152 PF10168 Nup88: Nuclear pore c 31.4 2.4E+02 0.0052 27.4 7.9 20 73-92 533-552 (717)
153 PF04799 Fzo_mitofusin: fzo-li 31.4 2.6E+02 0.0056 22.0 7.1 18 130-147 102-119 (171)
154 PRK11546 zraP zinc resistance 30.8 2.4E+02 0.0052 21.5 6.3 23 122-144 85-107 (143)
155 KOG3612 PHD Zn-finger protein 30.8 4.2E+02 0.009 24.9 8.8 24 168-191 512-535 (588)
156 COG5325 t-SNARE complex subuni 30.5 3.4E+02 0.0074 23.1 9.6 42 167-208 233-278 (283)
157 PF10875 DUF2670: Protein of u 30.4 62 0.0013 23.8 2.9 26 184-209 18-43 (139)
158 COG1459 PulF Type II secretory 30.2 4E+02 0.0088 23.8 9.5 29 145-173 127-155 (397)
159 TIGR01294 P_lamban phospholamb 30.2 1.3E+02 0.0028 18.1 3.9 18 191-208 33-50 (52)
160 TIGR01478 STEVOR variant surfa 30.2 23 0.0005 30.1 0.8 28 126-153 103-131 (295)
161 PTZ00046 rifin; Provisional 30.1 1.1E+02 0.0024 27.0 4.9 44 109-153 54-101 (358)
162 KOG3385 V-SNARE [Intracellular 30.0 63 0.0014 23.7 2.8 16 131-146 30-45 (118)
163 PRK14125 cell division suppres 29.9 75 0.0016 22.7 3.3 17 183-199 2-18 (103)
164 COG1723 Uncharacterized conser 29.9 1.5E+02 0.0033 25.7 5.6 68 145-214 264-331 (331)
165 PF09125 COX2-transmemb: Cytoc 29.8 99 0.0022 17.7 3.0 13 190-202 14-26 (38)
166 PRK10381 LPS O-antigen length 29.5 70 0.0015 28.4 3.7 19 183-201 34-52 (377)
167 PF00429 TLV_coat: ENV polypro 29.3 1.1E+02 0.0024 28.7 5.2 21 126-146 442-462 (561)
168 PF04048 Sec8_exocyst: Sec8 ex 29.1 1.2E+02 0.0026 22.8 4.5 15 69-83 19-33 (142)
169 KOG4433 Tweety transmembrane/c 29.0 2E+02 0.0043 26.5 6.4 20 134-153 163-182 (526)
170 PF04888 SseC: Secretion syste 28.9 3.6E+02 0.0078 22.8 8.6 27 141-167 27-53 (306)
171 PRK00720 tatA twin arginine tr 28.8 52 0.0011 22.3 2.2 8 197-204 13-20 (78)
172 PF12420 DUF3671: Protein of u 28.8 2.2E+02 0.0047 20.3 5.5 18 184-201 40-57 (104)
173 KOG3202 SNARE protein TLG1/Syn 28.5 2.2E+02 0.0047 23.6 6.1 36 147-182 173-208 (235)
174 PF13937 DUF4212: Domain of un 28.4 1.4E+02 0.0031 20.3 4.3 26 181-206 3-28 (81)
175 TIGR03545 conserved hypothetic 28.4 2.8E+02 0.006 26.1 7.5 54 122-175 187-240 (555)
176 PF08372 PRT_C: Plant phosphor 28.2 2.8E+02 0.0061 21.4 6.5 15 175-189 80-94 (156)
177 PF03238 ESAG1: ESAG protein; 28.1 2E+02 0.0044 23.4 5.7 56 143-198 6-61 (231)
178 PF12725 DUF3810: Protein of u 28.1 1E+02 0.0022 26.7 4.4 25 193-218 57-81 (318)
179 TIGR03017 EpsF chain length de 28.0 4.3E+02 0.0094 23.5 10.0 39 112-152 270-308 (444)
180 PF03670 UPF0184: Uncharacteri 27.8 1.3E+02 0.0029 20.6 4.0 29 156-184 42-70 (83)
181 PF00306 ATP-synt_ab_C: ATP sy 27.8 1.3E+02 0.0029 21.4 4.4 41 142-182 3-45 (113)
182 PF13172 PepSY_TM_1: PepSY-ass 27.7 1.1E+02 0.0023 16.8 3.1 12 183-194 3-14 (34)
183 COG4499 Predicted membrane pro 27.5 83 0.0018 28.1 3.7 30 28-59 40-70 (434)
184 PF06422 PDR_CDR: CDR ABC tran 27.3 76 0.0016 22.5 3.0 31 172-202 35-65 (103)
185 PF04999 FtsL: Cell division p 27.1 1.4E+02 0.0029 20.6 4.2 6 202-207 27-32 (97)
186 PF06387 Calcyon: D1 dopamine 27.1 66 0.0014 25.3 2.7 28 189-216 82-109 (186)
187 KOG0994 Extracellular matrix g 27.1 3.8E+02 0.0082 27.9 8.3 54 130-183 1665-1718(1758)
188 COG1969 HyaC Ni,Fe-hydrogenase 26.6 53 0.0012 26.5 2.2 40 177-216 95-152 (227)
189 COG3524 KpsE Capsule polysacch 25.9 1.1E+02 0.0024 26.5 4.0 17 126-142 230-246 (372)
190 PF05527 DUF758: Domain of unk 25.7 1.8E+02 0.0039 23.2 5.0 77 69-154 108-185 (186)
191 PF02009 Rifin_STEVOR: Rifin/s 25.5 48 0.001 28.5 1.9 54 109-164 34-93 (299)
192 PF08858 IDEAL: IDEAL domain; 25.5 1.4E+02 0.003 17.0 3.4 18 138-155 10-27 (37)
193 PF05659 RPW8: Arabidopsis bro 25.5 2.1E+02 0.0045 21.8 5.2 33 123-155 48-80 (147)
194 PF10779 XhlA: Haemolysin XhlA 25.3 2E+02 0.0044 18.7 9.3 34 163-202 36-69 (71)
195 PF15106 TMEM156: TMEM156 prot 25.2 45 0.00097 27.1 1.5 24 184-207 171-194 (226)
196 PF15188 CCDC-167: Coiled-coil 25.0 2.4E+02 0.0052 19.5 6.5 35 159-197 41-75 (85)
197 PHA01811 hypothetical protein 25.0 1.1E+02 0.0023 19.9 2.9 19 42-60 4-22 (78)
198 PF14257 DUF4349: Domain of un 24.9 4E+02 0.0086 22.0 9.2 13 73-85 103-115 (262)
199 PHA03386 P10 fibrous body prot 24.7 1.6E+02 0.0035 20.6 4.0 14 126-139 19-32 (94)
200 PF13163 DUF3999: Protein of u 24.6 60 0.0013 29.3 2.5 22 186-207 406-427 (429)
201 KOG0972 Huntingtin interacting 24.4 4.4E+02 0.0096 22.8 7.3 37 77-119 246-282 (384)
202 PRK12430 putative bifunctional 24.3 1.3E+02 0.0028 26.7 4.3 39 157-195 104-142 (379)
203 PF10690 Myticin-prepro: Mytic 24.3 25 0.00055 24.5 0.0 18 189-206 1-18 (98)
204 PRK03554 tatA twin arginine tr 24.1 72 0.0016 22.2 2.2 6 199-204 15-20 (89)
205 TIGR01477 RIFIN variant surfac 24.1 1.5E+02 0.0033 26.1 4.7 43 109-152 57-103 (353)
206 PF12277 DUF3618: Protein of u 24.0 1.7E+02 0.0038 17.6 3.9 27 128-154 5-31 (49)
207 PF12279 DUF3619: Protein of u 23.9 1.2E+02 0.0025 22.8 3.5 20 182-201 67-86 (131)
208 PF00664 ABC_membrane: ABC tra 23.8 3.5E+02 0.0076 21.0 11.2 13 168-180 208-220 (275)
209 PF10039 DUF2275: Predicted in 23.8 1.3E+02 0.0028 24.7 4.0 20 182-201 27-46 (218)
210 KOG3065 SNAP-25 (synaptosome-a 23.8 3.6E+02 0.0077 22.9 6.7 52 127-178 219-270 (273)
211 PF08700 Vps51: Vps51/Vps67; 23.7 2.3E+02 0.0049 18.8 7.3 51 130-180 34-84 (87)
212 PF08006 DUF1700: Protein of u 23.6 3.5E+02 0.0076 20.9 8.7 11 149-159 36-46 (181)
213 PRK15348 type III secretion sy 23.4 1.2E+02 0.0027 25.3 3.9 27 177-203 209-235 (249)
214 PF04286 DUF445: Protein of un 23.3 4.7E+02 0.01 22.3 9.3 23 140-162 297-320 (367)
215 PRK15471 chain length determin 22.8 1.2E+02 0.0027 26.3 3.9 18 183-200 25-42 (325)
216 PF11446 DUF2897: Protein of u 22.7 1.1E+02 0.0024 19.2 2.7 14 191-204 5-18 (55)
217 PF13044 DUF3904: Protein of u 22.7 81 0.0018 26.5 2.6 37 175-211 398-435 (436)
218 KOG0862 Synaptobrevin/VAMP-lik 22.6 4.3E+02 0.0093 21.6 9.1 66 128-195 120-196 (216)
219 COG5547 Small integral membran 22.4 1.2E+02 0.0027 19.3 2.8 16 185-200 3-18 (62)
220 PF10853 DUF2650: Protein of u 22.2 1.2E+02 0.0026 17.5 2.6 19 183-201 18-36 (38)
221 PHA02911 C-type lectin-like pr 22.2 3E+02 0.0065 22.3 5.6 25 151-175 2-26 (213)
222 PTZ00370 STEVOR; Provisional 22.0 40 0.00087 28.7 0.8 30 126-155 102-132 (296)
223 KOG1690 emp24/gp25L/p24 family 22.0 3.2E+02 0.007 22.1 5.7 22 168-189 167-189 (215)
224 COG3771 Predicted membrane pro 21.9 41 0.00089 23.3 0.7 15 202-216 51-65 (97)
225 smart00831 Cation_ATPase_N Cat 21.9 1.8E+02 0.0039 18.0 3.7 19 185-203 40-58 (64)
226 PF11694 DUF3290: Protein of u 21.8 1.4E+02 0.0031 22.8 3.7 19 185-203 14-32 (149)
227 COG3074 Uncharacterized protei 21.7 2.5E+02 0.0055 18.6 7.3 49 126-174 18-66 (79)
228 PRK11466 hybrid sensory histid 21.7 7.7E+02 0.017 24.2 12.5 8 202-209 344-351 (914)
229 TIGR03517 GldM_gliding gliding 21.7 5E+02 0.011 24.3 7.8 58 127-184 42-100 (523)
230 TIGR00869 sec62 protein transl 21.6 2E+02 0.0044 23.8 4.7 11 201-211 169-179 (232)
231 COG4477 EzrA Negative regulato 21.6 6.8E+02 0.015 23.5 9.0 63 127-189 376-438 (570)
232 PF01105 EMP24_GP25L: emp24/gp 21.5 33 0.00071 26.1 0.2 29 158-186 130-158 (183)
233 PF08525 OapA_N: Opacity-assoc 21.5 1.4E+02 0.003 16.1 2.6 6 190-195 11-16 (30)
234 PF04155 Ground-like: Ground-l 21.4 1.4E+02 0.003 19.7 3.2 12 137-148 10-21 (76)
235 PF06103 DUF948: Bacterial pro 21.4 2.7E+02 0.0058 18.8 7.9 9 129-137 36-44 (90)
236 PF02646 RmuC: RmuC family; I 21.3 4.4E+02 0.0095 22.5 7.0 39 128-166 22-60 (304)
237 PF11026 DUF2721: Protein of u 21.2 3.5E+02 0.0075 19.9 8.1 17 174-190 49-65 (130)
238 KOG3637 Vitronectin receptor, 21.2 93 0.002 31.6 3.2 21 194-214 985-1005(1030)
239 PF13228 DUF4037: Domain of un 20.9 3.1E+02 0.0067 19.3 6.1 55 107-165 24-78 (100)
240 PRK13895 conjugal transfer pro 20.9 3.8E+02 0.0083 20.4 13.9 67 68-144 20-87 (144)
241 PLN00064 photosystem II protei 20.9 4.1E+02 0.0089 20.7 6.6 71 74-153 90-165 (166)
242 KOG2881 Predicted membrane pro 20.8 2.9E+02 0.0062 23.5 5.4 70 112-193 145-217 (294)
243 PF00523 Fusion_gly: Fusion gl 20.8 93 0.002 28.7 2.9 18 126-144 432-449 (490)
244 KOG3368 Transport protein part 20.7 3.8E+02 0.0082 20.2 8.0 57 29-87 45-103 (140)
245 PF04531 Phage_holin_1: Bacter 20.7 89 0.0019 21.4 2.2 24 181-204 3-26 (84)
246 PRK05529 cell division protein 20.6 86 0.0019 26.1 2.5 20 177-196 24-43 (255)
247 PF11190 DUF2976: Protein of u 20.4 1.1E+02 0.0023 21.3 2.5 25 182-208 56-80 (87)
248 PF13121 DUF3976: Domain of un 20.4 97 0.0021 17.7 1.9 16 194-209 23-38 (41)
249 PF04510 DUF577: Family of unk 20.4 4.3E+02 0.0094 20.8 6.4 106 64-188 66-171 (174)
250 PRK10884 SH3 domain-containing 20.4 4.6E+02 0.01 21.1 10.7 7 192-198 174-180 (206)
251 COG4640 Predicted membrane pro 20.4 1E+02 0.0022 27.7 2.9 22 190-211 50-71 (465)
252 PHA02947 S-S bond formation pa 20.3 91 0.002 25.4 2.4 48 25-73 11-62 (215)
253 TIGR02338 gimC_beta prefoldin, 20.3 3.3E+02 0.0071 19.3 5.6 40 131-173 61-100 (110)
254 PF11146 DUF2905: Protein of u 20.3 1.7E+02 0.0038 19.0 3.3 26 190-217 3-28 (64)
255 PF05454 DAG1: Dystroglycan (D 20.3 34 0.00074 29.2 0.0 20 192-211 148-167 (290)
256 PF13974 YebO: YebO-like prote 20.1 67 0.0015 21.9 1.4 10 200-209 8-17 (80)
257 PRK10856 cytoskeletal protein 20.1 63 0.0014 28.1 1.6 14 173-186 100-113 (331)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-68 Score=413.29 Aligned_cols=217 Identities=41% Similarity=0.710 Sum_probs=212.2
Q ss_pred CceEEEEEEeCCeEEeeccCCCCcHHHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHH
Q 038691 1 MGILYGMVARGNVVLAEFSAAQTNGNAIARQVIDKLPQGISDRILSYSHDHYIFHVKRTDNLTVLCMADDSFGWRIPFAF 80 (221)
Q Consensus 1 M~I~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~f 80 (221)
|+|+|+.||||++|||||++.+|||.++|..+|+++|++ +++|.+|+.|+|+|||+.+||++|+|++|.+.++++||.|
T Consensus 1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~-~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaF 79 (217)
T KOG0859|consen 1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSS-SNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAF 79 (217)
T ss_pred CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCC-CCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHH
Confidence 899999999999999999999999999999999999994 4779999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccccccccchhhhHHHHHHhhhhCCCcccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHH
Q 038691 81 LEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHYSNDPNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLV 160 (221)
Q Consensus 81 L~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~ 160 (221)
|++|++.|.+.|+....++.+|+++++|++.|++.|+.|+++|.-|++.+++.+++|++++|.+|||++++|||+||.|+
T Consensus 80 Le~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~id~lskvkaqv~evk~vM~eNIekvldRGekiELLV 159 (217)
T KOG0859|consen 80 LERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLV 159 (217)
T ss_pred HHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeee
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 038691 161 DKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTLAFYCRDPLWRY 218 (221)
Q Consensus 161 ~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~~~c~gf~~~~ 218 (221)
|||++|+.+|..|++++++++|+|||+|+|+.+++++++++++|+|+...||||+||+
T Consensus 160 dKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~CgG~~~~s 217 (217)
T KOG0859|consen 160 DKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRCGGFTCPS 217 (217)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhccCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999998874
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-33 Score=219.52 Aligned_cols=187 Identities=25% Similarity=0.448 Sum_probs=169.0
Q ss_pred eEEEEEEeC--CeEEeeccC-C--CC-c---HHHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCC
Q 038691 3 ILYGMVARG--NVVLAEFSA-A--QT-N---GNAIARQVIDKLPQGISDRILSYSHDHYIFHVKRTDNLTVLCMADDSFG 73 (221)
Q Consensus 3 I~Ya~Iar~--~~iLae~~~-~--~~-~---~~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~ 73 (221)
|++++|+|. +.|||...+ . ++ + ....++.+++++.+. +++|+|++.|+|.|||+++.|++|+++||.+||
T Consensus 2 i~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~-s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP 80 (216)
T KOG0862|consen 2 ILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQ-SPTRCSIETGPFVFHFLIESGVCYLVICDKSYP 80 (216)
T ss_pred ceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCC-CCcccccccCCeEEEEEecCCEEEEEEecCCCc
Confidence 789999995 599987776 2 23 3 367999999999983 499999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhcccccccc--ccccccchhhhHHHHHHhhhhCCCcccchHHHHHHHHHHHHHHHHHhHHHHHH
Q 038691 74 WRIPFAFLEDIHQRFVRTYGRSIHS--AAAYAMNDEFSRILSKQMDHYSNDPNADRLNRLKGEMSHVRSVMIDNIEKIVE 151 (221)
Q Consensus 74 ~~~af~fL~~i~~~f~~~~~~~~~~--~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~~~l~ 151 (221)
+++||.||+++.++|.+.|+....+ ++||++ .+|++.|+..-++||+....+.+.++.+++.+|+.+|.+||+.++.
T Consensus 81 ~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~F-ieFD~~IQk~Kk~ynd~r~~~n~~~~n~el~~v~~im~~niedvl~ 159 (216)
T KOG0862|consen 81 RKLAFSYLEDLAQEFDKSYGKNIIQPASRPYAF-IEFDTFIQKTKKRYNDTRSQRNLLKLNQELQDVQRIMVENLEDVLQ 159 (216)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCccCCCeeE-EehhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 9999999999999999999876544 489988 5999999999999965445699999999999999999999999999
Q ss_pred hhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhH
Q 038691 152 RGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKL 191 (221)
Q Consensus 152 Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~ 191 (221)
|||.|+.|.+++.+|+..|...+++|+.++++..|.+|.-
T Consensus 160 rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa 199 (216)
T KOG0862|consen 160 RGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAA 199 (216)
T ss_pred hchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888873
No 3
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-32 Score=207.27 Aligned_cols=175 Identities=25% Similarity=0.370 Sum_probs=148.0
Q ss_pred CceEEEEEEeCC----eEEeeccCC------C-Cc---HH-HHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEE-eCCEEE
Q 038691 1 MGILYGMVARGN----VVLAEFSAA------Q-TN---GN-AIARQVIDKLPQGISDRILSYSHDHYIFHVKR-TDNLTV 64 (221)
Q Consensus 1 M~I~Ya~Iar~~----~iLae~~~~------~-~~---~~-~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~-~~~~~~ 64 (221)
|.|.+..|-+.+ .+|+.-++- . ++ |. -+++.+.++.+| ..|++++++.|.+|... .||+++
T Consensus 1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~---g~rqsvk~~~Y~~h~yvrndgL~~ 77 (198)
T KOG0861|consen 1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGP---GQRQSVKHEEYLVHVYVRNDGLCG 77 (198)
T ss_pred CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCc---ccccccccceeEEEEEEecCCeeE
Confidence 888888888873 566655542 1 33 32 377999999999 99999999999999655 569999
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHhhcc-ccccccccccccchhhhHHHHHHhhhhCCCccc-chHHHHHHHHHHHHHHH
Q 038691 65 LCMADDSFGWRIPFAFLEDIHQRFVRTY-GRSIHSAAAYAMNDEFSRILSKQMDHYSNDPNA-DRLNRLKGEMSHVRSVM 142 (221)
Q Consensus 65 ~~i~d~~~~~~~af~fL~~i~~~f~~~~-~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~-dkl~~~~~~v~~v~~im 142 (221)
++++|.+||.|+||.+|.++.++|.... +.+|. ....+. .+ -|.|..++.+| +||.+ |+|.++|+++||+|.+|
T Consensus 78 V~~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~-~~~~~~-~~-~~~L~~~l~ky-qdP~ead~l~kvQ~EldETKiiL 153 (198)
T KOG0861|consen 78 VLIADDEYPVRVAFTLLNKVLDEFTTKVPATQWP-VGETAD-LS-YPYLDTLLSKY-QDPAEADPLLKVQNELDETKIIL 153 (198)
T ss_pred EEEecCcCchhHHHHHHHHHHHHHhhcCcccccC-cCCCcC-CC-chhHHHHHHHh-cChhhhChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999996654 45565 322222 23 48999999999 89976 99999999999999999
Q ss_pred HHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHH
Q 038691 143 IDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKS 182 (221)
Q Consensus 143 ~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 182 (221)
.+.|+.+|+|||+||+|++||++|+.+|+.|+++|++.++
T Consensus 154 hkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~Ns 193 (198)
T KOG0861|consen 154 HKTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTNS 193 (198)
T ss_pred HHHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999998764
No 4
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-29 Score=180.36 Aligned_cols=91 Identities=30% Similarity=0.595 Sum_probs=85.1
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038691 121 NDPNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVIL 200 (221)
Q Consensus 121 ~~~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~ 200 (221)
+++.++++.++|++++||.+||++|++|+|||||+|++|++||++|+..|.+|+++|.++||+|||+|.|+.++++++++
T Consensus 24 ~~~~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~ 103 (116)
T KOG0860|consen 24 NNTANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVII 103 (116)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 038691 201 IIIYVTLAFYC 211 (221)
Q Consensus 201 ~i~~ii~~~~c 211 (221)
+++++|++++-
T Consensus 104 i~l~iiii~~~ 114 (116)
T KOG0860|consen 104 ILLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHHh
Confidence 88888777653
No 5
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.96 E-value=1.2e-28 Score=174.05 Aligned_cols=88 Identities=33% Similarity=0.670 Sum_probs=85.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 038691 125 ADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIY 204 (221)
Q Consensus 125 ~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ 204 (221)
+|++.++++++++|+++|.+|++++++|||+||.|+++|++|+.+|..|+++|++++|++||+++|++++++++++++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 038691 205 VTLAFYCR 212 (221)
Q Consensus 205 ii~~~~c~ 212 (221)
+|++.+||
T Consensus 82 ~i~~~~~g 89 (89)
T PF00957_consen 82 IIIIVICG 89 (89)
T ss_dssp HHHHTT--
T ss_pred HHHHHHhC
Confidence 99999996
No 6
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.91 E-value=2.2e-23 Score=162.50 Aligned_cols=181 Identities=20% Similarity=0.394 Sum_probs=142.0
Q ss_pred CceEEEEEEeCC--eEEeeccC-CCCcH--HHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEEe-CCEEEEEEEcCCCCc
Q 038691 1 MGILYGMVARGN--VVLAEFSA-AQTNG--NAIARQVIDKLPQGISDRILSYSHDHYIFHVKRT-DNLTVLCMADDSFGW 74 (221)
Q Consensus 1 M~I~Ya~Iar~~--~iLae~~~-~~~~~--~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~~-~~~~~~~i~d~~~~~ 74 (221)
|.++|..+..+. .+|++-.+ .+..| ...+..+|.++.|. ..++..++.++|.|||... +|++|+|+++++||.
T Consensus 1 i~s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~-~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~ 79 (190)
T COG5143 1 IASISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKT-SASRASIESGDYFFHYLKMSSGIVYVPISDKEYPN 79 (190)
T ss_pred CceEEEEeecCCcceeeccccccCcccccccchHHHHHHHhccc-ccchhccccCceEEEEEecCCCceeEEecccccch
Confidence 566676666664 45544433 22333 45778888888763 4567888999999998875 499999999999999
Q ss_pred chHHHHHHHHHHHHhhccccc-cccc-cccccchhhhHHHHHHhhhhCCCcc-cchHHHHHHHHHHHHHHHHHhHHHHHH
Q 038691 75 RIPFAFLEDIHQRFVRTYGRS-IHSA-AAYAMNDEFSRILSKQMDHYSNDPN-ADRLNRLKGEMSHVRSVMIDNIEKIVE 151 (221)
Q Consensus 75 ~~af~fL~~i~~~f~~~~~~~-~~~~-~~~~~~~~f~~~l~~~~~~yn~~~~-~dkl~~~~~~v~~v~~im~~ni~~~l~ 151 (221)
++|+..++++..+|....... +.+. .+. ...+|++.++. .| ++|. +|++.+++.+++|++.+|.+|++++++
T Consensus 80 ~la~~~~~~~~~~~~~s~~~~~~~d~~~~~-~~~~~d~~~e~---~y-~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~ 154 (190)
T COG5143 80 KLAYGYLNSIATEFLKSSALEQLIDDTVGI-MRVNIDKVIEK---GY-RDPSIQDKLDQLQQELEETKRVLNKNIEKVLY 154 (190)
T ss_pred hhhhHHHHhhccHhhhhhhHhhcccCccch-hhhhHHHHHHh---hc-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987665433 2222 222 22345555544 28 5665 599999999999999999999999999
Q ss_pred hhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHh
Q 038691 152 RGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWG 187 (221)
Q Consensus 152 Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~ 187 (221)
|||+|+.|+++|+.|..+|..|+++|++.++.+||+
T Consensus 155 R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~~~~ 190 (190)
T COG5143 155 RDEKLDLLVDLSSILLLSSKMFPKSAKKSNLCCLIN 190 (190)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeC
Confidence 999999999999999999999999999999999995
No 7
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.79 E-value=1.7e-18 Score=120.53 Aligned_cols=81 Identities=38% Similarity=0.807 Sum_probs=71.5
Q ss_pred HHHHHHhhCCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHhhccc-cccccccccccch
Q 038691 28 IARQVIDKLPQGISDRILSYSHDHYIFHVKRTDNLTVLCMADDSFGWRIPFAFLEDIHQRFVRTYG-RSIHSAAAYAMND 106 (221)
Q Consensus 28 ~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~-~~~~~~~~~~~~~ 106 (221)
+|+.+|++++++ +++|.+++.|+|.|||++++|++|+|+||++||+++||.||++|+++|.++|+ +.+.++.|+++ .
T Consensus 1 ~a~~il~~i~~~-~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~~-~ 78 (83)
T PF13774_consen 1 QARKILKRIPPN-GNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYSF-K 78 (83)
T ss_dssp HHHHHHHTS-TT-SESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTTT-H
T ss_pred CHHHHHHhcCCC-CCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcch-h
Confidence 589999999962 34899999999999999999999999999999999999999999999999998 57777788888 7
Q ss_pred hhhH
Q 038691 107 EFSR 110 (221)
Q Consensus 107 ~f~~ 110 (221)
+|++
T Consensus 79 ~F~~ 82 (83)
T PF13774_consen 79 EFDS 82 (83)
T ss_dssp HHHH
T ss_pred hcCC
Confidence 8875
No 8
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.00031 Score=55.51 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038691 127 RLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVT 206 (221)
Q Consensus 127 kl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii 206 (221)
+....+...+++..+|..|+++.++||.+.....|+.+++..+.+.+++-+.+...++|||.-|+=.+++....+..-.+
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~ 174 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSK 174 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 44567788888999999999999999999999999999999999999999999999999999999998888776654433
Q ss_pred H
Q 038691 207 L 207 (221)
Q Consensus 207 ~ 207 (221)
+
T Consensus 175 ~ 175 (190)
T COG5143 175 M 175 (190)
T ss_pred H
Confidence 3
No 9
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.20 E-value=0.01 Score=41.29 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYV 205 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~i 205 (221)
+.+..+++.+.+.-+.+.++-+++=+=.++-+.|.+.|+....+|...+++...-+-+ -+-+.+++++++++++++
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k----~~~i~~~iv~~~~~~i~~ 85 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYK----LYIIIIIIVIIIILIIII 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHhHHhhhhhhhhHHHH
Confidence 4667777777777777778777777777788889999999999999988776544433 344444444445544443
No 10
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=96.93 E-value=0.034 Score=39.06 Aligned_cols=78 Identities=10% Similarity=0.186 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhHH-------HHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038691 130 RLKGEMSHVRSVMIDNIE-------KIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILII 202 (221)
Q Consensus 130 ~~~~~v~~v~~im~~ni~-------~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i 202 (221)
++-+.+..++..|.+.++ .+.+.-+.|..+.+.=.++...-..-++--+++.|+.|.-++-+++.+.+.++++
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v 84 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVV 84 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455555555555443 3333333343333333333333333344456788888888888888888888888
Q ss_pred HHHHH
Q 038691 203 IYVTL 207 (221)
Q Consensus 203 ~~ii~ 207 (221)
+||++
T Consensus 85 ~yI~~ 89 (92)
T PF03908_consen 85 LYILW 89 (92)
T ss_pred HHHhh
Confidence 88775
No 11
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.023 Score=47.74 Aligned_cols=56 Identities=13% Similarity=0.280 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHh----hhHHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLH----RNTVRFKRQARRYK 181 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~----~~s~~f~~~a~~l~ 181 (221)
+.+.+++.++.||.+|+.+==.-+=+-|+.+|.+++.-++.+ ..+...++.++.-+
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~ 239 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQR 239 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999998866677799999999988887765 44555555555443
No 12
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.36 E-value=0.043 Score=44.72 Aligned_cols=78 Identities=10% Similarity=0.220 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHh---hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLH---RNTVRFKRQARRYKSSVCWGNCKLASGLVCVILII 202 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~---~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i 202 (221)
..+.+++.-+.|+.+...+=-+.+.++.|..|.+.+..++-. .++.....+|.+-.|+..-++++.|.|+++++|++
T Consensus 185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~vi 264 (280)
T COG5074 185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVI 264 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHH
Confidence 345566666666666666656788899999999888777654 23333444455555555555555555544444433
Q ss_pred H
Q 038691 203 I 203 (221)
Q Consensus 203 ~ 203 (221)
+
T Consensus 265 v 265 (280)
T COG5074 265 V 265 (280)
T ss_pred H
Confidence 3
No 13
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.1 Score=44.59 Aligned_cols=73 Identities=12% Similarity=0.313 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHH---HhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTAT---LHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVIL 200 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~---L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~ 200 (221)
+-+.+++..+.|+.++..+=--.+-+.||.+|.++...++ --.++..=-++|.+..++.. ++|+++|++++|+
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaR--K~k~i~ii~~iii 281 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKAR--KWKIIIIIILIII 281 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hceeeeehHHHHH
Confidence 5566777777777777766555667888888877655543 33444444555665555543 3444444444333
No 14
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.37 Score=35.15 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=37.8
Q ss_pred HHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 038691 149 IVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTL 207 (221)
Q Consensus 149 ~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~ 207 (221)
+=+=++|-|.|.+-|+.....|...+++--..+.||+ +-+.+++++++++++..|+
T Consensus 59 L~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~---~il~~v~~i~l~iiii~~~ 114 (116)
T KOG0860|consen 59 LDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMR---IILGLVIIILLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 3334555677888999999999999988887777766 5555555555554444443
No 15
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=93.77 E-value=0.19 Score=42.42 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=37.1
Q ss_pred CCeeEEEeCCeEEEEEEeC--CEEEEEEEcCCCCcchHHHHHHHHHHHHhhccccc
Q 038691 42 DRILSYSHDHYIFHVKRTD--NLTVLCMADDSFGWRIPFAFLEDIHQRFVRTYGRS 95 (221)
Q Consensus 42 ~~k~~~~~~~~~~~~l~~~--~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~ 95 (221)
....+|++|+|...|...+ +++|++|--.-..-..+-.||+.|+..|...|...
T Consensus 17 ~~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~ 72 (279)
T PF04086_consen 17 SGNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQ 72 (279)
T ss_dssp -----------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cCCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHH
Confidence 3446689999999988765 79999999988888888899999999999999754
No 16
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=93.00 E-value=1.5 Score=36.45 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=16.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHH
Q 038691 164 ATLHRNTVRFKRQARRYKSSV---CWGNCKLASGLVCVIL 200 (221)
Q Consensus 164 ~~L~~~s~~f~~~a~~l~r~~---~w~~~k~~~ii~~vv~ 200 (221)
+.+..+.......+.+++.+. |+ ++.|+++++|++
T Consensus 202 ~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~ 239 (251)
T PF09753_consen 202 EGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVII 239 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHH
Confidence 334455555555555554433 32 444444444333
No 17
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=92.38 E-value=0.24 Score=36.92 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=33.3
Q ss_pred CCeeEEE-eCCeEEEEEE---eCCEEEEEEEcCCCCcchHHHHHHHHHH
Q 038691 42 DRILSYS-HDHYIFHVKR---TDNLTVLCMADDSFGWRIPFAFLEDIHQ 86 (221)
Q Consensus 42 ~~k~~~~-~~~~~~~~l~---~~~~~~~~i~d~~~~~~~af~fL~~i~~ 86 (221)
-.|++.. .|||-++|.+ +++-+++|.+..+.|+-++...|.|++.
T Consensus 62 VTK~S~~lIDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~ 110 (141)
T PF09426_consen 62 VTKMSMHLIDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG 110 (141)
T ss_dssp SEE--S--SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred EEEEEeecccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence 3444444 4999999988 4689999999999999999999999985
No 18
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=92.03 E-value=2.7 Score=35.32 Aligned_cols=64 Identities=8% Similarity=0.115 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhH----HHhhhHHHHHHHHHHHHHHHHHhhh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTA----TLHRNTVRFKRQARRYKSSVCWGNC 189 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~----~L~~~s~~f~~~a~~l~r~~~w~~~ 189 (221)
..+.++..-+.|+.+|..+==.-+.+.|+-+|.+...-+ +|+..++...+.-...||.-.|+-|
T Consensus 195 ~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~ 262 (283)
T COG5325 195 EEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFY 262 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhh
Confidence 345667777788888888777778899998887665444 4555566666555555555444433
No 19
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=91.61 E-value=3.4 Score=28.80 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=42.3
Q ss_pred HHHHHHHHhH---HHHHHh-hhhhHHHHHhhHHHhhhHHHHH------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038691 137 HVRSVMIDNI---EKIVER-GDRLNLLVDKTATLHRNTVRFK------RQARRYKSSVCWGNCKLASGLVCVILIIIYVT 206 (221)
Q Consensus 137 ~v~~im~~ni---~~~l~R-ge~l~~L~~ks~~L~~~s~~f~------~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii 206 (221)
+|++-|...- ..-++| ...++.|.+.|+.|......+. ..|+++=.++-++...=.+++.+.+.+++.++
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v 84 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVV 84 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444554432 333344 4567888888888886555554 35555556666666666666665555554444
Q ss_pred HHH
Q 038691 207 LAF 209 (221)
Q Consensus 207 ~~~ 209 (221)
.++
T Consensus 85 ~yI 87 (92)
T PF03908_consen 85 LYI 87 (92)
T ss_pred HHH
Confidence 443
No 20
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=91.57 E-value=2.8 Score=27.79 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=23.2
Q ss_pred hhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038691 153 GDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVT 206 (221)
Q Consensus 153 ge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii 206 (221)
.++++.|+..++.+.........+-.+++-...| -+.++++++|.+++++|
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW---~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW---IWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3344445555444444444444444444433322 23345555555555544
No 21
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=91.08 E-value=2.3 Score=41.54 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=9.0
Q ss_pred HHHHHHHHHhcCCCCC
Q 038691 201 IIIYVTLAFYCRDPLW 216 (221)
Q Consensus 201 ~i~~ii~~~~c~gf~~ 216 (221)
++++.++..+||-.++
T Consensus 427 Iv~~~~lGLl~G~~G~ 442 (806)
T PF05478_consen 427 IVLCLLLGLLCGCCGY 442 (806)
T ss_pred HHHHHHHHHHHhhccC
Confidence 3345556667765553
No 22
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=90.94 E-value=1.8 Score=28.43 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=21.1
Q ss_pred hhhHHHHHhhHHHhhhHHHHHHHHHHHHHH
Q 038691 154 DRLNLLVDKTATLHRNTVRFKRQARRYKSS 183 (221)
Q Consensus 154 e~l~~L~~ks~~L~~~s~~f~~~a~~l~r~ 183 (221)
+|||.+++|-|. .++.-|++..+++=|-
T Consensus 19 ~rLd~iEeKVEf--~~~E~~Qr~Gkk~GRD 46 (70)
T TIGR01149 19 KRLDEIEEKVEF--VNGEVAQRIGKKVGRD 46 (70)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhHHhhhH
Confidence 457777777777 6778888888888765
No 23
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=90.86 E-value=4.5 Score=33.04 Aligned_cols=53 Identities=13% Similarity=0.322 Sum_probs=23.2
Q ss_pred HHHHHHhhhhCCCc---ccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHh
Q 038691 110 RILSKQMDHYSNDP---NADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLH 167 (221)
Q Consensus 110 ~~l~~~~~~yn~~~---~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~ 167 (221)
..|+...+.|+... .+|=+..+++++++|.. |++...+.++ +..+.+..+.+.
T Consensus 78 ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~t---de~k~~~~~e--i~k~r~e~~~ml 133 (230)
T PF03904_consen 78 SSLEETTKDFIDKTEKVHNDFQDILQDELKDVDT---DELKNIAQNE--IKKVREENKSML 133 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch---HHHHHHHHHH--HHHHHHHHHHHH
Confidence 34455555553211 12445556666655432 4444444333 333333333333
No 24
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=90.70 E-value=1.4 Score=36.13 Aligned_cols=30 Identities=10% Similarity=0.223 Sum_probs=21.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhc
Q 038691 182 SSVCWGNCKLASGLVCVILIIIYVTLAFYC 211 (221)
Q Consensus 182 r~~~w~~~k~~~ii~~vv~~i~~ii~~~~c 211 (221)
|+..|+-|.+.++++++|++++|-+..++-
T Consensus 247 Rkkki~c~gI~~iii~viv~vv~~v~~~v~ 276 (280)
T COG5074 247 RKKKIRCYGICFIIIIVIVVVVFKVVPFVV 276 (280)
T ss_pred HhcceehhhhHHHHHHHHHHHHhcccchhh
Confidence 344567778888888888888876655544
No 25
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=90.64 E-value=4.9 Score=30.45 Aligned_cols=87 Identities=16% Similarity=0.152 Sum_probs=47.3
Q ss_pred HHHHhhCCCC-------CCCCeeEEEeCCeEEEEEE-eCCEEEEEEEcCCCCcchHHHHHHHHHHHHhhccccccc-ccc
Q 038691 30 RQVIDKLPQG-------ISDRILSYSHDHYIFHVKR-TDNLTVLCMADDSFGWRIPFAFLEDIHQRFVRTYGRSIH-SAA 100 (221)
Q Consensus 30 ~~il~~i~~~-------~~~~k~~~~~~~~~~~~l~-~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~~~-~~~ 100 (221)
+.+..++.|. ......+++.+.|..|+.- ..|+-|+++||++.+. ..-.+++.+.+.|..-.-..+. ...
T Consensus 46 ~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV~KNPfy~~~ 124 (142)
T PF04099_consen 46 KAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYVVKNPFYSLE 124 (142)
T ss_dssp HHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHHHS-TTS-TT
T ss_pred HHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 4566677661 1356778889999999765 6899999999999863 4445666666655422111111 110
Q ss_pred ccccchhhhHHHHHHhh
Q 038691 101 AYAMNDEFSRILSKQMD 117 (221)
Q Consensus 101 ~~~~~~~f~~~l~~~~~ 117 (221)
-+-....|+..|+++++
T Consensus 125 ~pI~~~lF~~~l~~~~~ 141 (142)
T PF04099_consen 125 MPIRCELFDTKLDQYVK 141 (142)
T ss_dssp S----HHHHHHHHHHHH
T ss_pred CcEehHHHHHHHHHHHh
Confidence 01123567777766654
No 26
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=89.98 E-value=3.6 Score=27.13 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=21.9
Q ss_pred hhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHH
Q 038691 153 GDRLNLLVDKTATLHRNTVRFKRQARRYKSSV 184 (221)
Q Consensus 153 ge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 184 (221)
.+|||.+++|-|. .+|.-+++..+++=|-.
T Consensus 18 ~~rLd~iEeKvEf--~~~Ei~Qr~GkkiGRDi 47 (70)
T PF04210_consen 18 MKRLDEIEEKVEF--TNAEIAQRAGKKIGRDI 47 (70)
T ss_pred HHHHHHHHHHHHh--HHHHHHHHHhHHhhhHH
Confidence 3457777777777 66788888888887653
No 27
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.39 E-value=12 Score=32.58 Aligned_cols=115 Identities=20% Similarity=0.271 Sum_probs=71.8
Q ss_pred EEEEEEeCCeEEeeccC--CCCcHHHHHH-HHHhhCCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHH
Q 038691 4 LYGMVARGNVVLAEFSA--AQTNGNAIAR-QVIDKLPQGISDRILSYSHDHYIFHVKRTDNLTVLCMADDSFGWRIPFAF 80 (221)
Q Consensus 4 ~Ya~Iar~~~iLae~~~--~~~~~~~~a~-~il~~i~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~f 80 (221)
+|..=.||++++...=. -.++..++.+ .++.+ . ...--+.+.++-+|||...+++-.++||.........|.|
T Consensus 5 lfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n--~--d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~eF 80 (446)
T KOG0938|consen 5 LFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINN--L--DVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFEF 80 (446)
T ss_pred EEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhc--c--ccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHHHH
Confidence 34445677777765432 2244444333 22222 1 1222355779999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccccccccchhhhHHHHHHhhhhCCCccc
Q 038691 81 LEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHYSNDPNA 125 (221)
Q Consensus 81 L~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~ 125 (221)
|.++-+.+..-|+...+.+.++.+.--| ..|.++|+ | .-|++
T Consensus 81 l~kl~avm~aYfgk~~Eeaiknnf~lI~-ElLDemld-~-G~pqn 122 (446)
T KOG0938|consen 81 LYKLDAVMNAYFGKDREEAIKNNFVLIY-ELLDEMLD-F-GIPQN 122 (446)
T ss_pred HHHHHHHHHHHhcccchhhhhhceEeHH-HHHHHHHh-c-CCCcc
Confidence 9999988876666444444444333222 34555555 5 45655
No 28
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=89.04 E-value=7.9 Score=28.98 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=42.8
Q ss_pred eeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHhhccc
Q 038691 44 ILSYSHDHYIFHVKRTDNLTVLCMADDSFGWRIPFAFLEDIHQRFVRTYG 93 (221)
Q Consensus 44 k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~ 93 (221)
--.+.++++.+-|..-+++.++++++.+...-....||..+.+.+..-++
T Consensus 47 ~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 47 SPIFEHDNYRIVYKRYSDLYFVVVGDENENELLLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp TSEEEETTEEEEEEEETTEEEEEEESSTSBHHHHHHHHHHHHHHHHHHHS
T ss_pred ceeeecccceeeeEeeccEEEEEEeecccchHHHHHHHHHhhhhhhhhhc
Confidence 44577899998888889999999999999988889999998888876555
No 29
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=89.03 E-value=1.9 Score=27.82 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=41.2
Q ss_pred hHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 038691 156 LNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTLAF 209 (221)
Q Consensus 156 l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~~ 209 (221)
.+.+.+...+.-.++.++-+.+++=.|+.+++..|...+..+++-++-|+|=++
T Consensus 3 ~~~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~Ikli 56 (61)
T PRK09400 3 SNKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFIIYLI 56 (61)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777888889899999899999998888888777777776666443
No 30
>PTZ00478 Sec superfamily; Provisional
Probab=89.01 E-value=1.6 Score=29.75 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=45.8
Q ss_pred HHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 038691 150 VERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTLA 208 (221)
Q Consensus 150 l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~ 208 (221)
.+..+.++.+.+...+.-..|.+|-++.+|=.|+.+.+-.+...+.++++-++-|+|=+
T Consensus 10 ~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~IKL 68 (81)
T PTZ00478 10 TDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYSIKL 68 (81)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 34555677788888888889999999999999999988888877777776666665543
No 31
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=87.86 E-value=4.8 Score=27.12 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=21.7
Q ss_pred hhhHHHHHhhHHHhhhHHHHHHHHHHHHHHH
Q 038691 154 DRLNLLVDKTATLHRNTVRFKRQARRYKSSV 184 (221)
Q Consensus 154 e~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 184 (221)
+|||.+++|-|. .+|.-|++..+++=|-.
T Consensus 22 ~rLD~iEeKVEf--tn~Ei~Qr~GkkvGRDi 50 (77)
T PRK01026 22 KRLDEIEEKVEF--TNAEIFQRIGKKVGRDI 50 (77)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 356777777777 67788888888887653
No 32
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.59 E-value=3.4 Score=37.72 Aligned_cols=87 Identities=17% Similarity=0.276 Sum_probs=64.2
Q ss_pred EEEEEEeCCeEEeeccCCCCcH----HHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEEe--CCEEEEEEEcCCCCcchH
Q 038691 4 LYGMVARGNVVLAEFSAAQTNG----NAIARQVIDKLPQGISDRILSYSHDHYIFHVKRT--DNLTVLCMADDSFGWRIP 77 (221)
Q Consensus 4 ~Ya~Iar~~~iLae~~~~~~~~----~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~~--~~~~~~~i~d~~~~~~~a 77 (221)
.++...+|+.+|..|.....+| ..+++.+|-.-.. +--+++.+.|+.-|-.+ -+++|+|+-..-..-..+
T Consensus 4 ~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er~----~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv 79 (587)
T KOG0781|consen 4 QFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSERG----GVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYV 79 (587)
T ss_pred eeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhhc----CcccCchhheeEeeeecCCccEEEEEEEeccchhhhH
Confidence 5788899999999999865554 4455555543222 11227788888777664 479999998888777788
Q ss_pred HHHHHHHHHHHhhcccc
Q 038691 78 FAFLEDIHQRFVRTYGR 94 (221)
Q Consensus 78 f~fL~~i~~~f~~~~~~ 94 (221)
-.||+++.+.|...|..
T Consensus 80 ~~ll~~v~~~f~e~~~~ 96 (587)
T KOG0781|consen 80 DKLLNDVLNLFREKYDT 96 (587)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 89999999999988853
No 33
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.18 E-value=0.79 Score=45.66 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=35.9
Q ss_pred HhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHH
Q 038691 144 DNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVC 185 (221)
Q Consensus 144 ~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~ 185 (221)
.--+.+.+|||+|+.++++|++|+.++.+|...|.++.-++-
T Consensus 945 ~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~ 986 (993)
T KOG1983|consen 945 GALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYK 986 (993)
T ss_pred hcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhh
Confidence 345678899999999999999999999999999988765443
No 34
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.75 E-value=4.5 Score=29.48 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHH----HHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLL----VDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILI 201 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L----~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~ 201 (221)
..+..++++|.-.|..-.+--+.+-....-||.+ ..-+.-|+..-.+|+.=|+.-.++. +.|.+++++|++
T Consensus 36 e~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l-----~~~m~~f~lV~~ 110 (118)
T KOG3385|consen 36 EAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISL-----LCWMAVFSLVAF 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHH
Confidence 4566777777777766555222222222222222 2233345556666666555533332 234444444444
Q ss_pred HH
Q 038691 202 II 203 (221)
Q Consensus 202 i~ 203 (221)
+|
T Consensus 111 fi 112 (118)
T KOG3385|consen 111 FI 112 (118)
T ss_pred HH
Confidence 33
No 35
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=85.59 E-value=0.46 Score=36.24 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc
Q 038691 176 QARRYKSSVCWGNCKLASGLVCVILIIIYVTLAFYC 211 (221)
Q Consensus 176 ~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~~~c 211 (221)
+-.+.||... +|+..+++++||+++.+|++.+|
T Consensus 123 KEae~kr~K~---Cki~~Li~~~vc~~ilVivVpi~ 155 (159)
T PF06789_consen 123 KEAELKRSKV---CKIFALIVLAVCAVILVIVVPIC 155 (159)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHheEEEEEEEE
Confidence 3344444433 57778888888888888888888
No 36
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=82.44 E-value=18 Score=30.23 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=32.2
Q ss_pred hHHHHHHhhhhCCCcccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhh
Q 038691 109 SRILSKQMDHYSNDPNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRN 169 (221)
Q Consensus 109 ~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~ 169 (221)
.+.+++.+..|+ +||..+++-+++..+...+--+.--.+..+++.+.+|-+.++..
T Consensus 180 ~~~i~~~L~~~~-----~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~ 235 (264)
T PF06008_consen 180 AEAIRDDLNDYN-----AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQ 235 (264)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666663 46666666666666665554444445555555555555555533
No 37
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=82.33 E-value=15 Score=27.31 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=56.8
Q ss_pred EEEeCCeEEeeccCC--CCc--------HHH---HHHHHHhhCCC--C-CCCCeeEEEeCCeE-EEEEEeCCEEEEEEEc
Q 038691 7 MVARGNVVLAEFSAA--QTN--------GNA---IARQVIDKLPQ--G-ISDRILSYSHDHYI-FHVKRTDNLTVLCMAD 69 (221)
Q Consensus 7 ~Iar~~~iLae~~~~--~~~--------~~~---~a~~il~~i~~--~-~~~~k~~~~~~~~~-~~~l~~~~~~~~~i~d 69 (221)
.|++.+.+|.+++.. ++. ++- .|..+++..-. . ...=+.....+++. |.|++..++=|+.+++
T Consensus 1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~ 80 (132)
T PF04628_consen 1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHD 80 (132)
T ss_dssp EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEEC
T ss_pred CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEe
Confidence 367788777766642 221 222 33344443221 0 02234555667776 6688889999999988
Q ss_pred ---CCCCcchHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHhh
Q 038691 70 ---DSFGWRIPFAFLEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMD 117 (221)
Q Consensus 70 ---~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~ 117 (221)
........-.|..++.+.|....-+.-......=....|...++.+.+
T Consensus 81 ~~~~~~~d~~ik~fF~~vh~~Y~~~~~NPF~~~~~~I~S~~Fd~~v~~l~~ 131 (132)
T PF04628_consen 81 MSDNSIRDEDIKQFFKEVHELYVKALCNPFYQPGTPIKSPKFDSRVRALAK 131 (132)
T ss_dssp GGG-S--HHHHHHHHHHHHHHHHHHHTSTTCGCT-HHHHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHccCCCCCCCCCcCCHHHHHHHHHHhc
Confidence 455566678899999988875432221111000011356666666654
No 38
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.46 E-value=32 Score=28.50 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHh
Q 038691 128 LNRLKGEMSHVRSVMIDNIEKIVER 152 (221)
Q Consensus 128 l~~~~~~v~~v~~im~~ni~~~l~R 152 (221)
+...|.++-+=++...++|.+-+.|
T Consensus 139 ~~~~qqqm~~eQDe~Ld~ls~ti~r 163 (235)
T KOG3202|consen 139 IVQLQQQMLQEQDEGLDGLSATVQR 163 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444443
No 39
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=80.35 E-value=10 Score=24.94 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=19.4
Q ss_pred hhhHHHHHhhHHHhhhHHHHHHHHHHHHHH
Q 038691 154 DRLNLLVDKTATLHRNTVRFKRQARRYKSS 183 (221)
Q Consensus 154 e~l~~L~~ks~~L~~~s~~f~~~a~~l~r~ 183 (221)
++||++++|.+. .++.-|++-.+++-|-
T Consensus 22 kRLdeieekvef--~~~Ev~Qr~GkkiGRD 49 (75)
T COG4064 22 KRLDEIEEKVEF--VNGEVYQRIGKKIGRD 49 (75)
T ss_pred HHHHHHHHHHHh--hHHHHHHHHHHHhcch
Confidence 356777777776 5567777778877655
No 40
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=79.79 E-value=5.8 Score=25.59 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=35.8
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 038691 163 TATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTLAF 209 (221)
Q Consensus 163 s~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~~ 209 (221)
..+.-.++.++-+.+++=.|+.+++..+...+..+++-++-|+|=++
T Consensus 6 ~~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~Ikli 52 (61)
T TIGR00327 6 PVEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYIIKII 52 (61)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888889999999999999998888777777776665443
No 41
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=79.13 E-value=4 Score=28.60 Aligned_cols=13 Identities=8% Similarity=0.021 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhh
Q 038691 177 ARRYKSSVCWGNC 189 (221)
Q Consensus 177 a~~l~r~~~w~~~ 189 (221)
.|+.||+..|++.
T Consensus 5 ~kK~K~k~~l~~~ 17 (96)
T PF13800_consen 5 LKKAKRKSRLRTV 17 (96)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555544
No 42
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=78.53 E-value=27 Score=26.61 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=35.9
Q ss_pred EcCCCCcchHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHhhhhCCCcccchHH-HHHHHHHHHHHHHHHhH
Q 038691 68 ADDSFGWRIPFAFLEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHYSNDPNADRLN-RLKGEMSHVRSVMIDNI 146 (221)
Q Consensus 68 ~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~-~~~~~v~~v~~im~~ni 146 (221)
-+++-|-=+.....+.+.++...... .....|...+.....++. +....|-. -+..-+...++-|.+.+
T Consensus 20 L~~DDPILil~TiNe~ll~~~~~aq~---------~~l~~fk~elE~~~~~w~-~dak~kAEkiL~aal~~ske~m~~~l 89 (144)
T PF11657_consen 20 LSRDDPILILQTINERLLEDSAKAQQ---------EQLDQFKEELEEIASRWG-EDAKEKAEKILNAALAASKEAMNKIL 89 (144)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666766666666666665543321 122577788888888773 32223332 23333344444444444
No 43
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.80 E-value=13 Score=31.91 Aligned_cols=44 Identities=27% Similarity=0.344 Sum_probs=25.6
Q ss_pred hhHHHHHHHH-HHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHhc
Q 038691 168 RNTVRFKRQA-RRYKSSV-CWGNCKLASGLVCVILIIIYVTLAFYC 211 (221)
Q Consensus 168 ~~s~~f~~~a-~~l~r~~-~w~~~k~~~ii~~vv~~i~~ii~~~~c 211 (221)
.+|..|-.++ ..++... .-++-+=|-++++++++++++|++.+-
T Consensus 244 ~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i 289 (297)
T KOG0810|consen 244 ENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVI 289 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhh
Confidence 5666666653 3454443 345556677777777777765555544
No 44
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.98 E-value=35 Score=29.08 Aligned_cols=43 Identities=12% Similarity=0.226 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhh---hhHHHHHhhHHHhh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGD---RLNLLVDKTATLHR 168 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge---~l~~L~~ks~~L~~ 168 (221)
..+..++..+.|+=+|+.+=-..+=+.|| +||+.++.++-.-.
T Consensus 227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~ 272 (311)
T KOG0812|consen 227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIE 272 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhH
Confidence 44556667777777777664444445554 56666666654333
No 45
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.91 E-value=41 Score=27.34 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=9.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Q 038691 181 KSSVCWGNCKLASGLVCVILIII 203 (221)
Q Consensus 181 ~r~~~w~~~k~~~ii~~vv~~i~ 203 (221)
.|++.-.++-+++|+++.+++++
T Consensus 190 ~RR~~~nk~~~~aii~~l~~~il 212 (220)
T KOG1666|consen 190 TRRLIRNKFTLTAIIALLVLAIL 212 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333344444444443333
No 46
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.77 E-value=41 Score=27.35 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=27.9
Q ss_pred hHHHHHHhhhh-hHHHHHhhHHHhhhHHHHHHHH----------HHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038691 145 NIEKIVERGDR-LNLLVDKTATLHRNTVRFKRQA----------RRYKSSVCWGNCKLASGLVCVILIII 203 (221)
Q Consensus 145 ni~~~l~Rge~-l~~L~~ks~~L~~~s~~f~~~a----------~~l~r~~~w~~~k~~~ii~~vv~~i~ 203 (221)
-+|.+|++|.. +|.|+++=..|+..-+.+..-+ +-+.|+.. .=|+++++++++|+++
T Consensus 137 ~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~--~Dk~iF~~G~i~~~v~ 204 (213)
T KOG3251|consen 137 MLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVR--EDKIIFYGGVILTLVI 204 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH--hhHHHHHHHHHHHHHH
Confidence 34555555543 3555555555554444443322 22344332 3356666666666554
No 47
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.23 E-value=12 Score=24.34 Aligned_cols=54 Identities=11% Similarity=0.160 Sum_probs=37.0
Q ss_pred hhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 038691 155 RLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTLA 208 (221)
Q Consensus 155 ~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~ 208 (221)
+++.+.+-+.+...+|.+|.++.++=-|+.+-+-.+-..+-.++.-++-|+|=+
T Consensus 3 ~~~~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~aiGf~~mG~iGf~vKL 56 (67)
T KOG3498|consen 3 QVDQLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATAIGFVIMGFIGFFVKL 56 (67)
T ss_pred hHHHhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777788888888888888888876666655555555555555433
No 48
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.08 E-value=39 Score=26.65 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=51.9
Q ss_pred HhhCCCC-CCCCeeEEEeCCeEEEEE-EeCCEEEEEEEcCCCCcchHHHHHHHHHHHHhhcccccc-c-cc-cccccchh
Q 038691 33 IDKLPQG-ISDRILSYSHDHYIFHVK-RTDNLTVLCMADDSFGWRIPFAFLEDIHQRFVRTYGRSI-H-SA-AAYAMNDE 107 (221)
Q Consensus 33 l~~i~~~-~~~~k~~~~~~~~~~~~l-~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~~-~-~~-~~~~~~~~ 107 (221)
..++.|- .+.....++.|.+..|+. .-.|+-|++++++.. ..|-.+|+.+...|. +|.-.. . +. -|- -..-
T Consensus 111 ~~qlsp~~ksSGie~LetdtF~l~~~QTlTG~KFVvis~~~~--~~aD~lLrKiYelYs-DyvlKNPfYSlEMPI-Rc~l 186 (199)
T KOG3369|consen 111 STQLSPEPKSSGIEVLETDTFTLHIFQTLTGTKFVVIAEPGT--QGADSLLRKIYELYS-DYVLKNPFYSLEMPI-RCEL 186 (199)
T ss_pred eeccCCCCCCCceEEEEeccEEEEEEEccCCcEEEEEecCCc--hhHHHHHHHHHHHHH-HHhhcCCccCcccce-eHHH
Confidence 3444441 245677888899988854 469999999999987 467789999887664 553221 1 11 111 1245
Q ss_pred hhHHHHHHhh
Q 038691 108 FSRILSKQMD 117 (221)
Q Consensus 108 f~~~l~~~~~ 117 (221)
|++.|+.+++
T Consensus 187 FDe~lk~~le 196 (199)
T KOG3369|consen 187 FDEKLKFLLE 196 (199)
T ss_pred hhHHHHHHHh
Confidence 7777776654
No 49
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.53 E-value=20 Score=30.52 Aligned_cols=78 Identities=12% Similarity=0.183 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhH----HHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTA----TLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILI 201 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~----~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~ 201 (221)
.-+.++-+-+.|+..|+.+==..+++.|--+|-+.-.-+ .++..-++..|.-+..|+ -+.++++.++.+++++
T Consensus 218 ~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~---~~k~~~i~~L~l~ii~ 294 (305)
T KOG0809|consen 218 KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKR---NKKMKVILMLTLLIIA 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhc---CCceEehHHHHHHHHH
Confidence 456778888888899998877888899877776433333 333444444433322221 1234454444444444
Q ss_pred HHHHH
Q 038691 202 IIYVT 206 (221)
Q Consensus 202 i~~ii 206 (221)
+++++
T Consensus 295 llvll 299 (305)
T KOG0809|consen 295 LLVLL 299 (305)
T ss_pred HHHHH
Confidence 44333
No 50
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=73.67 E-value=6.5 Score=27.50 Aligned_cols=21 Identities=5% Similarity=-0.133 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHH
Q 038691 178 RRYKSSVCWGNCKLASGLVCV 198 (221)
Q Consensus 178 ~~l~r~~~w~~~k~~~ii~~v 198 (221)
+-+||..|+..++.+++.+++
T Consensus 3 ~i~kK~K~k~~l~~~~isi~~ 23 (96)
T PF13800_consen 3 KILKKAKRKSRLRTVVISIIS 23 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 346777788888887666655
No 51
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=73.31 E-value=34 Score=26.85 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHH
Q 038691 127 RLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQ 176 (221)
Q Consensus 127 kl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~ 176 (221)
-...+..+|++++.-|.+.|+++-..=++||.+..++..|...+..+...
T Consensus 110 tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~e 159 (171)
T PF04799_consen 110 TFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESE 159 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999998888888888777777766666555433
No 52
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=72.74 E-value=38 Score=27.76 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 038691 194 GLVCVILIIIYVTLAFYCRD 213 (221)
Q Consensus 194 ii~~vv~~i~~ii~~~~c~g 213 (221)
+.+..+++++|+.++.+-|+
T Consensus 154 i~aml~Vf~LF~lvmt~g~d 173 (230)
T PF03904_consen 154 IGAMLFVFMLFALVMTIGSD 173 (230)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 44444444555555555443
No 53
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=72.67 E-value=16 Score=23.37 Aligned_cols=16 Identities=0% Similarity=0.152 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 038691 189 CKLASGLVCVILIIIY 204 (221)
Q Consensus 189 ~k~~~ii~~vv~~i~~ 204 (221)
.++++.++++++++++
T Consensus 38 ~~~i~~~~~i~~l~v~ 53 (59)
T PF09889_consen 38 TQYIFFGIFILFLAVW 53 (59)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3443333333333333
No 54
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=71.81 E-value=46 Score=26.00 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=6.9
Q ss_pred HHHHHHHHHHh
Q 038691 79 AFLEDIHQRFV 89 (221)
Q Consensus 79 ~fL~~i~~~f~ 89 (221)
+||+++++...
T Consensus 5 efL~~L~~~L~ 15 (181)
T PF08006_consen 5 EFLNELEKYLK 15 (181)
T ss_pred HHHHHHHHHHH
Confidence 56777776554
No 55
>PHA02557 22 prohead core protein; Provisional
Probab=71.79 E-value=28 Score=29.21 Aligned_cols=91 Identities=13% Similarity=0.196 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHhhhhC-CCccc--chHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 038691 77 PFAFLEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHYS-NDPNA--DRLNRLKGEMSHVRSVMIDNIEKIVERG 153 (221)
Q Consensus 77 af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn-~~~~~--dkl~~~~~~v~~v~~im~~ni~~~l~Rg 153 (221)
+-.||+.+.++|.....-......+..+..+|-.-|+.+....| .-|.+ |.+..+.+++++.+.-...-++...+..
T Consensus 89 vd~~l~~~~~eW~~ENk~Av~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~ 168 (271)
T PHA02557 89 ADKYLDHLAKEWLAENKLAVDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVALE 168 (271)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999988876544333333444555666666777665543 33544 7888999999998888888777777777
Q ss_pred hhhHH------HHHhhHHHh
Q 038691 154 DRLNL------LVDKTATLH 167 (221)
Q Consensus 154 e~l~~------L~~ks~~L~ 167 (221)
+.++. +.+.|.+|.
T Consensus 169 e~i~~~~r~~i~~e~t~gLt 188 (271)
T PHA02557 169 EYINEVKREVILSEVTKDLT 188 (271)
T ss_pred HHHHHHHHHHHHHHHHcchh
Confidence 76665 444555555
No 56
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.94 E-value=74 Score=27.45 Aligned_cols=51 Identities=8% Similarity=0.294 Sum_probs=29.7
Q ss_pred hhhHHHHHHhhhhCCCcccchHHHHHHHHHH---HHHHHHHhHHHHHHhhhhhHHHHHh
Q 038691 107 EFSRILSKQMDHYSNDPNADRLNRLKGEMSH---VRSVMIDNIEKIVERGDRLNLLVDK 162 (221)
Q Consensus 107 ~f~~~l~~~~~~yn~~~~~dkl~~~~~~v~~---v~~im~~ni~~~l~Rge~l~~L~~k 162 (221)
-|....+.+...+|+ .-|.+.+++..+-| .+++|. +++++..++||.+.+-
T Consensus 215 ~~E~En~~l~~~~n~--~~devrqie~~lvEI~~Lq~ifs---ehvl~Q~~~Id~I~d~ 268 (316)
T KOG3894|consen 215 LLETENQRLLNELNE--LLDEVRQIEKRLVEISALQDIFS---EHVLQQDQNIDLIHDL 268 (316)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 345555555555531 22555556554444 444444 4778888888888773
No 57
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=64.65 E-value=61 Score=29.25 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=19.2
Q ss_pred hhhhHHHHHHhhhhCCCcccchHHHHHHHHHHHHHHHHHhHH
Q 038691 106 DEFSRILSKQMDHYSNDPNADRLNRLKGEMSHVRSVMIDNIE 147 (221)
Q Consensus 106 ~~f~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~ 147 (221)
.+|...+.+..+.. ++ .++-+..+.++++.+.+.+...++
T Consensus 105 ~~~h~gV~~t~~si-~~-an~tv~~l~nqv~~l~~al~~t~~ 144 (418)
T cd07912 105 DETHDGVVQLTYSL-RN-ANHTVAGIDNQTSDTEASLNVTVE 144 (418)
T ss_pred HHHhhhHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34444444444443 11 224455555566665555555444
No 58
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.84 E-value=77 Score=25.63 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=9.5
Q ss_pred hhhhhHHHHHhhHHHhhhHHHH
Q 038691 152 RGDRLNLLVDKTATLHRNTVRF 173 (221)
Q Consensus 152 Rge~l~~L~~ks~~L~~~s~~f 173 (221)
+...++.|.+.-+.|+.+-..-
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555444444433333
No 59
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.66 E-value=81 Score=25.82 Aligned_cols=12 Identities=0% Similarity=0.016 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 038691 197 CVILIIIYVTLA 208 (221)
Q Consensus 197 ~vv~~i~~ii~~ 208 (221)
+.+|.+++++++
T Consensus 218 is~C~llllfy~ 229 (231)
T KOG3208|consen 218 ISVCTLLLLFYW 229 (231)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 60
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=61.47 E-value=87 Score=25.94 Aligned_cols=11 Identities=9% Similarity=0.603 Sum_probs=5.8
Q ss_pred HHHHHHHHHhh
Q 038691 80 FLEDIHQRFVR 90 (221)
Q Consensus 80 fL~~i~~~f~~ 90 (221)
+-.+++++...
T Consensus 114 ~~~eLR~~ll~ 124 (251)
T PF09753_consen 114 YTSELRKRLLS 124 (251)
T ss_pred hhHHHHhhhcc
Confidence 44556665543
No 61
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=61.23 E-value=16 Score=20.79 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=11.2
Q ss_pred HHHHhhhhHHHHHHHHHHH
Q 038691 183 SVCWGNCKLASGLVCVILI 201 (221)
Q Consensus 183 ~~~w~~~k~~~ii~~vv~~ 201 (221)
+.|.||+..-+.+.+++++
T Consensus 17 qkwirnit~cfal~vv~lv 35 (40)
T PF13124_consen 17 QKWIRNITFCFALLVVVLV 35 (40)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4688887765444444433
No 62
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=61.15 E-value=13 Score=28.26 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Q 038691 189 CKLASGLVCVILIIIYVTLAFYC 211 (221)
Q Consensus 189 ~k~~~ii~~vv~~i~~ii~~~~c 211 (221)
+.++|+++++|.++++++.+..|
T Consensus 30 hm~tILiaIvVliiiiivli~lc 52 (189)
T PF05568_consen 30 HMYTILIAIVVLIIIIIVLIYLC 52 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666655555555566
No 63
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=61.12 E-value=11 Score=37.35 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc
Q 038691 168 RNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTLAFYC 211 (221)
Q Consensus 168 ~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~~~c 211 (221)
+.|..-..+--+--+...|+.|++++|..+++++++++.++++-
T Consensus 1049 dtsf~wl~sp~K~~~~i~W~~yr~~il~~l~ililll~l~~fly 1092 (1105)
T KOG1326|consen 1049 DTSFLWLTSPCKSFKFILWHRYRWYILLLLLILILLLLLALFLY 1092 (1105)
T ss_pred CccchhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555788999999999998888877766665554
No 64
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.85 E-value=93 Score=26.33 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=13.7
Q ss_pred HHHhHHHHHHhhhhhHHHHHhhHHHh
Q 038691 142 MIDNIEKIVERGDRLNLLVDKTATLH 167 (221)
Q Consensus 142 m~~ni~~~l~Rge~l~~L~~ks~~L~ 167 (221)
...+.+.+=+|.+-++.|+..--++.
T Consensus 168 ~~~~~~~ieeR~q~I~~lE~dI~dvN 193 (269)
T KOG0811|consen 168 LEYQLDLIEEREQAIEQLEADIIDVN 193 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666666555444443
No 65
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=58.51 E-value=6.2 Score=35.26 Aligned_cols=13 Identities=23% Similarity=0.669 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCC
Q 038691 201 IIIYVTLAFYCRD 213 (221)
Q Consensus 201 ~i~~ii~~~~c~g 213 (221)
||-|+.||++|+|
T Consensus 383 lvGfLcWwf~crg 395 (397)
T PF03302_consen 383 LVGFLCWWFICRG 395 (397)
T ss_pred HHHHHhhheeecc
Confidence 4558999999987
No 66
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=58.06 E-value=12 Score=25.65 Aligned_cols=9 Identities=22% Similarity=0.279 Sum_probs=3.8
Q ss_pred HHHHHHHhc
Q 038691 203 IYVTLAFYC 211 (221)
Q Consensus 203 ~~ii~~~~c 211 (221)
++.+++++.
T Consensus 19 i~~~~~~~~ 27 (85)
T PF11337_consen 19 IIGIYYFFN 27 (85)
T ss_pred HHHHHHhhc
Confidence 334444444
No 67
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=57.90 E-value=13 Score=30.58 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=8.8
Q ss_pred HHHHHHHHHhcCC
Q 038691 201 IIIYVTLAFYCRD 213 (221)
Q Consensus 201 ~i~~ii~~~~c~g 213 (221)
+++|+|+++++||
T Consensus 161 lilf~i~w~~~~g 173 (224)
T PF03839_consen 161 LILFLITWFFTGG 173 (224)
T ss_pred HHHHHHHHHHhcC
Confidence 3567777777755
No 68
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=55.33 E-value=52 Score=20.93 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSS 183 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~ 183 (221)
+.|.....-++++.++-.+-++.+-.-++.|....++..++...-..-.+--+++.|+
T Consensus 8 ~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 8 DSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 6788888889999999999999999999999988888888776655544444444443
No 69
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.16 E-value=46 Score=26.81 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHHHH
Q 038691 133 GEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLAS----GLVCVILIIIYVTLA 208 (221)
Q Consensus 133 ~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~----ii~~vv~~i~~ii~~ 208 (221)
+++..++..|.+==+-++++=|++-+=-+|-|-|-+.+...+.++...+.+-.--+-++|. +-.+++++++++|++
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyi 204 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYI 204 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHH
Confidence 3455555555553334444433333333333334477777777776665544221222222 333444444555555
Q ss_pred Hhc
Q 038691 209 FYC 211 (221)
Q Consensus 209 ~~c 211 (221)
++-
T Consensus 205 iv~ 207 (217)
T KOG0859|consen 205 IVA 207 (217)
T ss_pred HHH
Confidence 543
No 70
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=54.49 E-value=83 Score=22.99 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=45.8
Q ss_pred HHHhhCCC-CCCCCeeEEEeCCeEEEE-EEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHhhcccccc-c-cc-cccccc
Q 038691 31 QVIDKLPQ-GISDRILSYSHDHYIFHV-KRTDNLTVLCMADDSFGWRIPFAFLEDIHQRFVRTYGRSI-H-SA-AAYAMN 105 (221)
Q Consensus 31 ~il~~i~~-~~~~~k~~~~~~~~~~~~-l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~~-~-~~-~~~~~~ 105 (221)
.|+.++.| ..+..+..+..+++..|. -...|.-|+.++.+. +...+++ |+.+...|. +|.... . +. -|- -.
T Consensus 45 aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kFV~~~~k~-t~na~~q-l~kiY~lYs-dYV~knPfys~EMPI-~c 120 (134)
T COG5122 45 AILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVFVAEKR-TVNALFQ-LQKIYSLYS-DYVTKNPFYSPEMPI-QC 120 (134)
T ss_pred hhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEEEEEecCC-chhHHHH-HHHHHHHHH-HHhhcCCCCCcccce-eh
Confidence 34444433 016888888999998885 457899999999443 3334444 444554443 443211 1 11 111 12
Q ss_pred hhhhHHHHHHhh
Q 038691 106 DEFSRILSKQMD 117 (221)
Q Consensus 106 ~~f~~~l~~~~~ 117 (221)
.-|++.+++..+
T Consensus 121 ~lFde~lkrm~e 132 (134)
T COG5122 121 SLFDEHLKRMFE 132 (134)
T ss_pred hhhhHHHHHHhc
Confidence 456777766543
No 71
>PHA02650 hypothetical protein; Provisional
Probab=53.11 E-value=12 Score=25.40 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=5.4
Q ss_pred hhHHHHHHHHHHHH
Q 038691 189 CKLASGLVCVILII 202 (221)
Q Consensus 189 ~k~~~ii~~vv~~i 202 (221)
+.++++++.+++++
T Consensus 50 ~~~ii~i~~v~i~~ 63 (81)
T PHA02650 50 QNFIFLIFSLIIVA 63 (81)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344433333333
No 72
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.61 E-value=14 Score=32.23 Aligned_cols=29 Identities=10% Similarity=0.252 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHH
Q 038691 133 GEMSHVRSVMIDNIEKIVERGDRLNLLVD 161 (221)
Q Consensus 133 ~~v~~v~~im~~ni~~~l~Rge~l~~L~~ 161 (221)
...++++..|.+|.++.-+|..+.+....
T Consensus 126 ~~~de~~~l~~e~~~~~~d~v~k~~~k~e 154 (372)
T KOG2927|consen 126 KAKDEVKALLKEGLKKLCDRVAKTEEKGE 154 (372)
T ss_pred hHHHHHHHhhccchhhhccchhcccccch
Confidence 45677888888898888666666555444
No 73
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=52.31 E-value=56 Score=20.39 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLH 167 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~ 167 (221)
+.+..+...+.++++++.+==+.+-+-|+-|+.+.+..+.-.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~ 45 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRAN 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHH
Confidence 567888899999998887655677788888888887776544
No 74
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=51.85 E-value=1e+02 Score=25.40 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=7.5
Q ss_pred hhHHHhhhHHHHHHHHH
Q 038691 162 KTATLHRNTVRFKRQAR 178 (221)
Q Consensus 162 ks~~L~~~s~~f~~~a~ 178 (221)
.+..|...|....+-++
T Consensus 195 N~~~L~~~Serve~y~k 211 (244)
T KOG2678|consen 195 NSQGLMDVSERVEKYDK 211 (244)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 33444445544444333
No 75
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=51.65 E-value=1.1e+02 Score=23.78 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIV 150 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l 150 (221)
....+++.+++.+++-+.+-|+++-
T Consensus 80 ~~~e~L~~eie~l~~~L~~ei~~l~ 104 (177)
T PF07798_consen 80 SENEKLQREIEKLRQELREEINKLR 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888776643
No 76
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=51.20 E-value=9.9 Score=26.66 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Q 038691 189 CKLASGLVCVILIIIYVTLAFYC 211 (221)
Q Consensus 189 ~k~~~ii~~vv~~i~~ii~~~~c 211 (221)
|+.++..++.+++++++|.++.|
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~C 63 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCC 63 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHH
Confidence 45566666666666666666666
No 77
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=51.09 E-value=1.8e+02 Score=25.75 Aligned_cols=17 Identities=6% Similarity=0.061 Sum_probs=8.2
Q ss_pred CcchHHHHHHHHHHHHh
Q 038691 73 GWRIPFAFLEDIHQRFV 89 (221)
Q Consensus 73 ~~~~af~fL~~i~~~f~ 89 (221)
+...-..|++++.....
T Consensus 57 ~~~~~~~f~~~L~~ll~ 73 (399)
T PRK10573 57 RGEQSAEFIRQLATLLQ 73 (399)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 33334456666655443
No 78
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=50.18 E-value=20 Score=24.49 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 038691 191 LASGLVCVILIIIYVTLAFYC 211 (221)
Q Consensus 191 ~~~ii~~vv~~i~~ii~~~~c 211 (221)
+..|++++|++++-++++.++
T Consensus 6 i~~iialiv~~iiaIvvW~iv 26 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTIV 26 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666655544444443
No 79
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.06 E-value=2e+02 Score=26.19 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=28.4
Q ss_pred CCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHH
Q 038691 42 DRILSYSHDHYIFHVKRTDNLTVLCMADDSFGWRIPF 78 (221)
Q Consensus 42 ~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af 78 (221)
.....++.|++-|-|-.-|.+-++.||...+..-...
T Consensus 44 ~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNIleDl 80 (512)
T KOG2635|consen 44 KQHTFVETDSVRYVYQPLDNLYIVLITTKQSNILEDL 80 (512)
T ss_pred CCccEEecccEEEEEEecccEEEEEEeccccchhhHH
Confidence 4445567788888888889999999999988754443
No 80
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=49.99 E-value=14 Score=19.04 Aligned_cols=6 Identities=17% Similarity=0.617 Sum_probs=2.5
Q ss_pred HHHHHH
Q 038691 202 IIYVTL 207 (221)
Q Consensus 202 i~~ii~ 207 (221)
++++|+
T Consensus 14 ILLiIv 19 (24)
T PF09680_consen 14 ILLIIV 19 (24)
T ss_pred HHHHHh
Confidence 344444
No 81
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=49.64 E-value=1.9e+02 Score=26.79 Aligned_cols=20 Identities=0% Similarity=0.242 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhHHHHHHh
Q 038691 133 GEMSHVRSVMIDNIEKIVER 152 (221)
Q Consensus 133 ~~v~~v~~im~~ni~~~l~R 152 (221)
.+.+++.....+.+...++.
T Consensus 68 ~~~~~~~~~w~~~~~~~~~~ 87 (569)
T PRK10600 68 AQLQALQDYWRNELKPALQQ 87 (569)
T ss_pred HHHHHHHHHHHHhhhHHhhc
Confidence 34444444444445444443
No 82
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=49.01 E-value=57 Score=20.84 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=4.5
Q ss_pred hhHHHHHH
Q 038691 168 RNTVRFKR 175 (221)
Q Consensus 168 ~~s~~f~~ 175 (221)
+.|..|-+
T Consensus 9 ETA~~FL~ 16 (60)
T PF06072_consen 9 ETATEFLR 16 (60)
T ss_pred ccHHHHHH
Confidence 55556654
No 83
>PHA02844 putative transmembrane protein; Provisional
Probab=49.00 E-value=16 Score=24.45 Aligned_cols=8 Identities=13% Similarity=0.434 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 038691 193 SGLVCVIL 200 (221)
Q Consensus 193 ~ii~~vv~ 200 (221)
++++.+++
T Consensus 53 i~i~~v~~ 60 (75)
T PHA02844 53 LTIIFVVF 60 (75)
T ss_pred HHHHHHHH
Confidence 33333333
No 84
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=48.83 E-value=60 Score=30.15 Aligned_cols=20 Identities=10% Similarity=0.457 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCCCCCccCC
Q 038691 202 IIYVTLAFYCRDPLWRYCFE 221 (221)
Q Consensus 202 i~~ii~~~~c~gf~~~~C~~ 221 (221)
+||.+++.+-.|+-|++|.+
T Consensus 488 VLLAaLlSfLtg~~fq~~vd 507 (538)
T PF05781_consen 488 VLLAALLSFLTGLFFQRCVD 507 (538)
T ss_pred HHHHHHHHHHhcccccchhc
Confidence 34444445555778899864
No 85
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=48.26 E-value=56 Score=22.89 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=22.8
Q ss_pred HHHhhhHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHH
Q 038691 164 ATLHRNTVRFKRQARRYKSS----VCWGNCKLASGLVCVILIII 203 (221)
Q Consensus 164 ~~L~~~s~~f~~~a~~l~r~----~~w~~~k~~~ii~~vv~~i~ 203 (221)
++|...-+.|.+++.+.++. .+-+|||-.+-.+++..++|
T Consensus 28 EdL~peQ~h~akQaE~an~ekV~~~~aknykN~is~a~i~alVi 71 (108)
T KOG4782|consen 28 EDLPPEQKHFAKQAEKANQEKVKEIFAKNYKNHISFAGIGALVI 71 (108)
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 45666667777777665543 24456666555555444443
No 86
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=48.25 E-value=26 Score=23.46 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 038691 194 GLVCVILIIIYVTLAFYC 211 (221)
Q Consensus 194 ii~~vv~~i~~ii~~~~c 211 (221)
+++++++++++++++++|
T Consensus 6 ~~~g~~~ll~~v~~~~~~ 23 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVC 23 (75)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhheeEEEE
Confidence 333334444444455555
No 87
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=48.19 E-value=18 Score=32.07 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=19.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 038691 181 KSSVCWGNCKLASGLVCVILIIIYVTLAFY 210 (221)
Q Consensus 181 ~r~~~w~~~k~~~ii~~vv~~i~~ii~~~~ 210 (221)
+++-||.++...+++.+++++++.+++.++
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~ig~~~gFv 323 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLVIGFAIGFV 323 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 456799999888777666655554444433
No 88
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=48.06 E-value=39 Score=26.87 Aligned_cols=37 Identities=30% Similarity=0.368 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHH--hHHHHHHhhhhhHHHHHhhHHHh
Q 038691 131 LKGEMSHVRSVMID--NIEKIVERGDRLNLLVDKTATLH 167 (221)
Q Consensus 131 ~~~~v~~v~~im~~--ni~~~l~Rge~l~~L~~ks~~L~ 167 (221)
.|-+++.++.+|.+ |-+.++||.-.=++|.|+-++|.
T Consensus 21 aKiq~~~~k~~m~d~snf~~ife~~~sdse~Dd~vd~lE 59 (214)
T PF06837_consen 21 AKIQIESIKPIMQDFSNFDEIFERPLSDSELDDKVDKLE 59 (214)
T ss_pred HHHHHHhhhHHHHhccchHHHHcccCcchhHHHHHHHHh
Confidence 55567777888877 77888877544444555555444
No 89
>PHA03011 hypothetical protein; Provisional
Probab=47.66 E-value=78 Score=22.53 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=37.0
Q ss_pred hhhHHHHHHhhhhCCCcccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHH
Q 038691 107 EFSRILSKQMDHYSNDPNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATL 166 (221)
Q Consensus 107 ~f~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L 166 (221)
.....+.++.-+||. -.|...-+..+..+...+..+|.|.+.--...+|.|.+.-.++
T Consensus 61 ai~e~ldeL~~qYN~--L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 61 AIIEILDELIAQYNE--LLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 334566677777741 2245556777777777788888877776666666666555443
No 90
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=47.10 E-value=34 Score=23.33 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 038691 188 NCKLASGLVCVILIIIYVTLAF 209 (221)
Q Consensus 188 ~~k~~~ii~~vv~~i~~ii~~~ 209 (221)
+.|-.+|+.++|++++.+|+..
T Consensus 32 ~lKrlliivvVvVlvVvvivg~ 53 (93)
T PF08999_consen 32 NLKRLLIIVVVVVLVVVVIVGA 53 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEeeehhHHHHHHH
Confidence 5565566666666555555544
No 91
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=47.03 E-value=30 Score=20.01 Aligned_cols=6 Identities=33% Similarity=0.833 Sum_probs=2.2
Q ss_pred HHHHHH
Q 038691 195 LVCVIL 200 (221)
Q Consensus 195 i~~vv~ 200 (221)
++.|++
T Consensus 9 Iv~V~v 14 (38)
T PF02439_consen 9 IVAVVV 14 (38)
T ss_pred HHHHHH
Confidence 333333
No 92
>PF15339 Afaf: Acrosome formation-associated factor
Probab=45.60 E-value=31 Score=27.10 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=13.3
Q ss_pred hHHHHHHHHHH-HHHHHHHHHhc
Q 038691 190 KLASGLVCVIL-IIIYVTLAFYC 211 (221)
Q Consensus 190 k~~~ii~~vv~-~i~~ii~~~~c 211 (221)
|+.+++++.+. +++|++++++|
T Consensus 129 KlkLmLGIsLmTl~lfv~Ll~~c 151 (200)
T PF15339_consen 129 KLKLMLGISLMTLFLFVILLAFC 151 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333 56778888888
No 93
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=45.58 E-value=28 Score=25.78 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 038691 191 LASGLVCVILIIIYVT 206 (221)
Q Consensus 191 ~~~ii~~vv~~i~~ii 206 (221)
+..|+++|++.++.+|
T Consensus 66 i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHH
Confidence 3445555555444433
No 94
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=45.34 E-value=1.4e+02 Score=26.87 Aligned_cols=68 Identities=7% Similarity=0.016 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHhhccc
Q 038691 25 GNAIARQVIDKLPQGISDRILSYSHDHYIFHVKRTDNLTVLCMADDSFGWRIPFAFLEDIHQRFVRTYG 93 (221)
Q Consensus 25 ~~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~ 93 (221)
+..+.+.++.-...+ .++-..+..|+..|.|+..+.+.++||+..+-+......-|+-+.....+..+
T Consensus 37 ~~g~~~aiiS~~~~~-~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL~~ly~qils~lt 104 (415)
T PF03164_consen 37 LMGVIQAIISFFQSN-GDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQLDYLYSQILSILT 104 (415)
T ss_pred HHHHHHHHHHHHHhC-CCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHHHHHHHHHHHhcc
Confidence 445556666655432 36666788899999999999999999999998877777778777776655443
No 95
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=45.05 E-value=97 Score=25.45 Aligned_cols=21 Identities=10% Similarity=-0.086 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHh
Q 038691 167 HRNTVRFKRQARRYKSSVCWG 187 (221)
Q Consensus 167 ~~~s~~f~~~a~~l~r~~~w~ 187 (221)
..++...+-.+.++.++..-+
T Consensus 193 D~N~~~L~~~Serve~y~ksk 213 (244)
T KOG2678|consen 193 DVNSQGLMDVSERVEKYDKSK 213 (244)
T ss_pred hHHHHHHHhhhHHHHHHHHhh
Confidence 366667777777777766544
No 96
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=44.52 E-value=82 Score=20.11 Aligned_cols=14 Identities=7% Similarity=0.000 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHHH
Q 038691 189 CKLASGLVCVILII 202 (221)
Q Consensus 189 ~k~~~ii~~vv~~i 202 (221)
+-+.++++++++.+
T Consensus 41 i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 41 IFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444333333
No 97
>PHA03054 IMV membrane protein; Provisional
Probab=43.36 E-value=21 Score=23.63 Aligned_cols=12 Identities=17% Similarity=0.083 Sum_probs=4.4
Q ss_pred hhHHHHHHHHHH
Q 038691 189 CKLASGLVCVIL 200 (221)
Q Consensus 189 ~k~~~ii~~vv~ 200 (221)
+.++++++.+++
T Consensus 49 ~~~ii~l~~v~~ 60 (72)
T PHA03054 49 YWLIIIFFIVLI 60 (72)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 98
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=42.54 E-value=96 Score=20.26 Aligned_cols=39 Identities=18% Similarity=0.072 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 038691 169 NTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTL 207 (221)
Q Consensus 169 ~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~ 207 (221)
+..+|-+.|++=-|.-+-+-.|+..+.++++-++-|+|-
T Consensus 17 e~~rvl~~arKP~~eEy~~~aKi~~~Gi~liG~IGfiI~ 55 (65)
T COG2443 17 EYRRVLKVARKPDWEEYSKIAKITGLGILLIGIIGFIIY 55 (65)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666665555555544443
No 99
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=42.35 E-value=35 Score=22.76 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 038691 135 MSHVRSVM 142 (221)
Q Consensus 135 v~~v~~im 142 (221)
+|.|+.+|
T Consensus 24 i~vVksVl 31 (72)
T PF12575_consen 24 INVVKSVL 31 (72)
T ss_pred HHHHHHHH
Confidence 44444444
No 100
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.25 E-value=78 Score=27.99 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=37.2
Q ss_pred EEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHhhccc
Q 038691 46 SYSHDHYIFHVKRTDNLTVLCMADDSFGWRIPFAFLEDIHQRFVRTYG 93 (221)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~ 93 (221)
.....+|.++-...+++.+++++..+.|.-.++.||.+|.+-|..-|+
T Consensus 49 vi~~p~hylfsv~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 49 VISTPHHYLFSVYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred eecCCceeeeeeeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 333345555555678888888888899988999999999998887666
No 101
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=42.24 E-value=1.8e+02 Score=25.75 Aligned_cols=35 Identities=6% Similarity=0.235 Sum_probs=22.9
Q ss_pred HHHhhHHHhhhHH--HHHHHHHHHHHHHHHhhhhHHH
Q 038691 159 LVDKTATLHRNTV--RFKRQARRYKSSVCWGNCKLAS 193 (221)
Q Consensus 159 L~~ks~~L~~~s~--~f~~~a~~l~r~~~w~~~k~~~ 193 (221)
+.++...|+++|. ..++.-++||.-+-=-.+|+.+
T Consensus 317 meerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 317 MEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 4556667777776 6666667787766655666544
No 102
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=42.20 E-value=31 Score=21.97 Aligned_cols=16 Identities=13% Similarity=-0.068 Sum_probs=9.6
Q ss_pred HHhhhhHHHHHHHHHH
Q 038691 185 CWGNCKLASGLVCVIL 200 (221)
Q Consensus 185 ~w~~~k~~~ii~~vv~ 200 (221)
|...|+++++++++.+
T Consensus 3 WladYWWiiLl~lvG~ 18 (63)
T PF13980_consen 3 WLADYWWIILLILVGM 18 (63)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777655544443
No 103
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=41.57 E-value=1e+02 Score=21.20 Aligned_cols=13 Identities=15% Similarity=0.082 Sum_probs=6.9
Q ss_pred hhhHHHHHHhhhh
Q 038691 107 EFSRILSKQMDHY 119 (221)
Q Consensus 107 ~f~~~l~~~~~~y 119 (221)
.+...++++....
T Consensus 30 ~l~~~~~~~~~~l 42 (124)
T PF00482_consen 30 PLREELQKIRRRL 42 (124)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555555
No 104
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=41.57 E-value=54 Score=20.24 Aligned_cols=18 Identities=11% Similarity=0.359 Sum_probs=9.2
Q ss_pred HhhhhHHHHHHHHHHHHH
Q 038691 186 WGNCKLASGLVCVILIII 203 (221)
Q Consensus 186 w~~~k~~~ii~~vv~~i~ 203 (221)
|...++.-++..+|+.++
T Consensus 11 y~tLrigGLi~A~vlfi~ 28 (50)
T PF02038_consen 11 YETLRIGGLIFAGVLFIL 28 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHhhccchHHHHHHHHH
Confidence 455665555555444443
No 105
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=41.48 E-value=8.4 Score=36.01 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=0.7
Q ss_pred hhhhHHHHHHhhhh
Q 038691 106 DEFSRILSKQMDHY 119 (221)
Q Consensus 106 ~~f~~~l~~~~~~y 119 (221)
.+|..++++..+.+
T Consensus 480 iDfnkel~e~~~n~ 493 (610)
T PF01601_consen 480 IDFNKELDEIFKNL 493 (610)
T ss_dssp -------------S
T ss_pred CChHHHHHHHHHhc
Confidence 45666777777666
No 106
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=41.36 E-value=1e+02 Score=25.52 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=36.6
Q ss_pred ceEEEEEEeCCeEEeeccCCCCcHHHHHHHHHhhCCCCCCCCeeEEEeCCeEE
Q 038691 2 GILYGMVARGNVVLAEFSAAQTNGNAIARQVIDKLPQGISDRILSYSHDHYIF 54 (221)
Q Consensus 2 ~I~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~~i~~~~~~~k~~~~~~~~~~ 54 (221)
||-|+.||.....+......-..+-+++..++..-.. +.+..++-++|.|
T Consensus 30 ~i~y~sv~qpt~~f~~~~k~h~~YLdiIN~il~~eSe---N~Kyayeg~nYHw 79 (249)
T PF11675_consen 30 PIAYISVAQPTATFEHDEKKHTKYLDIINDILRDESE---NIKYAYEGGNYHW 79 (249)
T ss_pred ceeEEeccCceEEEeecCccchhHHHHHHHHHhcccc---ccceeeeCCceEE
Confidence 5889999888777776666556778899999987665 5566666666544
No 107
>COG1422 Predicted membrane protein [Function unknown]
Probab=40.90 E-value=1.9e+02 Score=23.31 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHH--hhhhhHHHHHhhHHHhhhHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVE--RGDRLNLLVDKTATLHRNTVRF 173 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~--Rge~l~~L~~ks~~L~~~s~~f 173 (221)
.++.++|+...|.++.+++ +-+ ..++++.|+++=.++.+....+
T Consensus 72 ekm~~~qk~m~efq~e~~e----A~~~~d~~~lkkLq~~qmem~~~Q~el 117 (201)
T COG1422 72 EKMKELQKMMKEFQKEFRE----AQESGDMKKLKKLQEKQMEMMDDQREL 117 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888877777655 223 2345555666555554444333
No 108
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=40.50 E-value=1.3e+02 Score=25.05 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=8.5
Q ss_pred cccccchhhhHHHHHHhhhh
Q 038691 100 AAYAMNDEFSRILSKQMDHY 119 (221)
Q Consensus 100 ~~~~~~~~f~~~l~~~~~~y 119 (221)
.|+.+...+. .+...+..|
T Consensus 18 ~~~~l~~~~e-~~~~~L~~~ 36 (264)
T PF06008_consen 18 APYKLLSSIE-DLTNQLRSY 36 (264)
T ss_pred hHHHHHHHHH-HHHHHHHHH
Confidence 3454544442 344444445
No 109
>smart00096 UTG Uteroglobin.
Probab=39.93 E-value=41 Score=22.24 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=25.5
Q ss_pred HHHhhhhCCCccc-chHHHHHHHHHHHHHHHHHhHHHHHH
Q 038691 113 SKQMDHYSNDPNA-DRLNRLKGEMSHVRSVMIDNIEKIVE 151 (221)
Q Consensus 113 ~~~~~~yn~~~~~-dkl~~~~~~v~~v~~im~~ni~~~l~ 151 (221)
...++.||.+|.- +...++++=+|....-=++||-++++
T Consensus 22 ~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~ 61 (69)
T smart00096 22 EASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTE 61 (69)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4557788665543 66667777777766666667666654
No 110
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=39.85 E-value=14 Score=25.75 Aligned_cols=28 Identities=11% Similarity=0.320 Sum_probs=21.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 038691 185 CWGNCKLASGLVCVILIIIYVTLAFYCR 212 (221)
Q Consensus 185 ~w~~~k~~~ii~~vv~~i~~ii~~~~c~ 212 (221)
-|.++-..+|+.++.++++|+.+.++-+
T Consensus 33 ~ws~vv~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 33 PWSRVVEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred cceeEeeeeehHHHHHHHHHHHHHHHHH
Confidence 3777777788888888888888887653
No 111
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=39.63 E-value=3.3e+02 Score=26.80 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 038691 168 RNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTLAFYCR 212 (221)
Q Consensus 168 ~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~~~c~ 212 (221)
..+..|.....+.-.--|--.+-+-.++.+|+++.++..+...||
T Consensus 397 ~~~~~~~~~~~~y~~yR~~~~lil~~~llLIv~~~~lGLl~G~~G 441 (806)
T PF05478_consen 397 RSSRSFEDEYEKYDSYRWIVGLILCCVLLLIVLCLLLGLLCGCCG 441 (806)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444444455544445455555566667777777777777777
No 112
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=39.05 E-value=88 Score=18.86 Aligned_cols=44 Identities=18% Similarity=0.412 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRN 169 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~ 169 (221)
+.+..+...+.+++++..+=-..+-+-|+.|+.+.+..+.....
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~ 49 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVN 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888887654445556667788777766554433
No 113
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=38.78 E-value=27 Score=23.42 Aligned_cols=25 Identities=12% Similarity=0.289 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcc
Q 038691 195 LVCVILIIIYVTLAFYCRDPLWRYC 219 (221)
Q Consensus 195 i~~vv~~i~~ii~~~~c~gf~~~~C 219 (221)
++.+++.+++++.+.++.-+-+.+|
T Consensus 3 i~~~~~g~~~ll~~v~~~~~~~rr~ 27 (75)
T PF14575_consen 3 IASIIVGVLLLLVLVIIVIVCFRRC 27 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTT-
T ss_pred EehHHHHHHHHHHhheeEEEEEeeE
Confidence 3444444444555555534444554
No 114
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=38.74 E-value=87 Score=18.81 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 038691 190 KLASGLVCVILIIIYVTLA 208 (221)
Q Consensus 190 k~~~ii~~vv~~i~~ii~~ 208 (221)
-+-+.+++++++++++|++
T Consensus 32 fvnfclilicllli~iiv~ 50 (52)
T PF04272_consen 32 FVNFCLILICLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666654
No 115
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=38.58 E-value=31 Score=23.95 Aligned_cols=10 Identities=50% Similarity=0.912 Sum_probs=5.2
Q ss_pred HHHHHHHHhc
Q 038691 202 IIYVTLAFYC 211 (221)
Q Consensus 202 i~~ii~~~~c 211 (221)
++.+|.+++|
T Consensus 45 il~VilwfvC 54 (94)
T PF05393_consen 45 ILLVILWFVC 54 (94)
T ss_pred HHHHHHHHHH
Confidence 3444555566
No 116
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=38.37 E-value=17 Score=25.70 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=6.6
Q ss_pred HHHHHHHHhcC
Q 038691 202 IIYVTLAFYCR 212 (221)
Q Consensus 202 i~~ii~~~~c~ 212 (221)
+.++.|+++|+
T Consensus 83 v~~l~w~f~~r 93 (96)
T PTZ00382 83 VGFLCWWFVCR 93 (96)
T ss_pred HHHHhheeEEe
Confidence 34566666664
No 117
>PHA02975 hypothetical protein; Provisional
Probab=38.12 E-value=44 Score=22.00 Aligned_cols=9 Identities=0% Similarity=-0.060 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 038691 192 ASGLVCVIL 200 (221)
Q Consensus 192 ~~ii~~vv~ 200 (221)
+++++.+++
T Consensus 48 ii~i~~v~~ 56 (69)
T PHA02975 48 IIFIIFITC 56 (69)
T ss_pred HHHHHHHHH
Confidence 333333333
No 118
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=37.97 E-value=1.7e+02 Score=21.98 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHhhhhCCCccc---chH-HHHHHHHHH
Q 038691 75 RIPFAFLEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHYSNDPNA---DRL-NRLKGEMSH 137 (221)
Q Consensus 75 ~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~---dkl-~~~~~~v~~ 137 (221)
.-+-.=..+....|...|.....-....++ ......|..+--+|++-|.. +|+ ..+.+|+++
T Consensus 62 ~~a~~~ar~~indyvsrYRr~~~v~g~~SF-ttm~TALNsLAGHY~sy~~rPlPeklk~Rl~~El~~ 127 (135)
T TIGR03044 62 SEAQAEARQLINDYISRYRRRPRVNGLSSF-TTMQTALNSLAGHYKSYANRPLPEKLKERLEKELKK 127 (135)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCCcccH-HHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Confidence 345555566666787778655332222223 45677899999999665532 333 245555544
No 119
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=37.91 E-value=31 Score=29.33 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC
Q 038691 192 ASGLVCVILIIIYVTLAFYCRDPLW 216 (221)
Q Consensus 192 ~~ii~~vv~~i~~ii~~~~c~gf~~ 216 (221)
.++++++|++|++.||+--=+.-+|
T Consensus 266 lvllil~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 266 LVLIILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3445555556666677654444444
No 120
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=37.73 E-value=1.7e+02 Score=21.65 Aligned_cols=58 Identities=12% Similarity=0.230 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHHH----HHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRS----VMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSS 183 (221)
Q Consensus 126 dkl~~~~~~v~~v~~----im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~ 183 (221)
..+.+++..++++.. ...+|-+.++..-..++.+..-.+.++.+-........+++.+
T Consensus 33 ~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~e 94 (132)
T PF10392_consen 33 TPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSE 94 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433 3334666677666666666666666666666666666665544
No 121
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=37.48 E-value=50 Score=21.98 Aligned_cols=24 Identities=17% Similarity=0.103 Sum_probs=14.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Q 038691 184 VCWGNCKLASGLVCVILIIIYVTL 207 (221)
Q Consensus 184 ~~w~~~k~~~ii~~vv~~i~~ii~ 207 (221)
.||+.+|+.++..+..+++-+.+.
T Consensus 2 ~~~~~ik~~~LF~~~T~lfYy~~~ 25 (71)
T PF14004_consen 2 RWLDMIKFFLLFTGCTLLFYYAIL 25 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888887666665554444443
No 122
>PF14992 TMCO5: TMCO5 family
Probab=37.45 E-value=2.6e+02 Score=23.82 Aligned_cols=19 Identities=11% Similarity=-0.027 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhhHHHHHHH
Q 038691 179 RYKSSVCWGNCKLASGLVC 197 (221)
Q Consensus 179 ~l~r~~~w~~~k~~~ii~~ 197 (221)
+-++..|.|..++.++.++
T Consensus 208 ~~~~~~wkr~lr~l~f~vL 226 (280)
T PF14992_consen 208 KNSPTFWKRALRLLFFMVL 226 (280)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3345777777777543333
No 123
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=37.21 E-value=43 Score=20.67 Aligned_cols=14 Identities=14% Similarity=-0.109 Sum_probs=8.0
Q ss_pred HHHhhhhHHHHHHH
Q 038691 184 VCWGNCKLASGLVC 197 (221)
Q Consensus 184 ~~w~~~k~~~ii~~ 197 (221)
.||+++|..++-++
T Consensus 2 e~~~~~~~~iiG~~ 15 (51)
T PF10031_consen 2 EFWKNHRGKIIGGL 15 (51)
T ss_pred hHHHHCcchHHHHH
Confidence 46777775544443
No 124
>PRK13664 hypothetical protein; Provisional
Probab=37.11 E-value=58 Score=20.67 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=9.8
Q ss_pred HHhhhhHHHHHHHHHHHH
Q 038691 185 CWGNCKLASGLVCVILII 202 (221)
Q Consensus 185 ~w~~~k~~~ii~~vv~~i 202 (221)
|...|.+++++.+.|-++
T Consensus 3 WLadyWWilill~lvG~i 20 (62)
T PRK13664 3 WLAKYWWILVLVFLVGVL 20 (62)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 666677764444444333
No 125
>PTZ00370 STEVOR; Provisional
Probab=36.53 E-value=33 Score=29.18 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCC
Q 038691 193 SGLVCVILIIIYVTLAFYCRDPLW 216 (221)
Q Consensus 193 ~ii~~vv~~i~~ii~~~~c~gf~~ 216 (221)
++++++|++|++.||+--=+.-+|
T Consensus 263 vllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 263 VLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchh
Confidence 344455555666677643333333
No 126
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=36.44 E-value=37 Score=25.96 Aligned_cols=19 Identities=11% Similarity=0.487 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 038691 193 SGLVCVILIIIYVTLAFYC 211 (221)
Q Consensus 193 ~ii~~vv~~i~~ii~~~~c 211 (221)
+|+++.|.+++.++++++|
T Consensus 121 lilaisvtvv~~iliii~C 139 (154)
T PF14914_consen 121 LILAISVTVVVMILIIIFC 139 (154)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444333333333344
No 127
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=36.29 E-value=1.1e+02 Score=20.81 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=10.8
Q ss_pred hhHHHHHhhHHHhhhHHHHHHHHHHH
Q 038691 155 RLNLLVDKTATLHRNTVRFKRQARRY 180 (221)
Q Consensus 155 ~l~~L~~ks~~L~~~s~~f~~~a~~l 180 (221)
+|..+..+-..++......++++.++
T Consensus 65 KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 65 KLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444433
No 128
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=35.58 E-value=72 Score=21.95 Aligned_cols=12 Identities=8% Similarity=-0.130 Sum_probs=6.0
Q ss_pred HHHHhhhhHHHH
Q 038691 183 SVCWGNCKLASG 194 (221)
Q Consensus 183 ~~~w~~~k~~~i 194 (221)
+...|.+-+.+.
T Consensus 30 ~sfirdFvLVic 41 (84)
T PF06143_consen 30 RSFIRDFVLVIC 41 (84)
T ss_pred hHHHHHHHHHHH
Confidence 445556655333
No 129
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=35.54 E-value=67 Score=20.72 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=25.8
Q ss_pred HHHHHHhhhhCCCccc-chHHHHHHHHHHHHHHHHHhHHHHHH
Q 038691 110 RILSKQMDHYSNDPNA-DRLNRLKGEMSHVRSVMIDNIEKIVE 151 (221)
Q Consensus 110 ~~l~~~~~~yn~~~~~-dkl~~~~~~v~~v~~im~~ni~~~l~ 151 (221)
......++.||.+|.. +...++|+=+++....=+.|+-++++
T Consensus 17 ~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 17 EEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 3467778889766543 66667777666654444455554443
No 130
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.32 E-value=41 Score=23.69 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 038691 190 KLASGLVCVILIIIYV 205 (221)
Q Consensus 190 k~~~ii~~vv~~i~~i 205 (221)
|..++++++++++|+|
T Consensus 4 K~~llL~l~LA~lLli 19 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLI 19 (95)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3445555544444433
No 131
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=34.89 E-value=36 Score=29.27 Aligned_cols=8 Identities=25% Similarity=0.140 Sum_probs=4.7
Q ss_pred eEEeeccC
Q 038691 13 VVLAEFSA 20 (221)
Q Consensus 13 ~iLae~~~ 20 (221)
..|+|.--
T Consensus 19 R~LcECel 26 (299)
T PF02009_consen 19 RSLCECEL 26 (299)
T ss_pred cchhhhcc
Confidence 56666553
No 132
>COG4327 Predicted membrane protein [Function unknown]
Probab=34.82 E-value=67 Score=22.55 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 038691 176 QARRYKSSVCWGNCKLASGLVCVILIIIYVTLAF 209 (221)
Q Consensus 176 ~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~~ 209 (221)
.+...++..|..|..++..+.+|-.++-|+++++
T Consensus 5 ~~~~~a~aywranttli~~lL~vwflVSfvvi~f 38 (101)
T COG4327 5 DAEHPARAYWRANTTLIAALLGVWFLVSFVVILF 38 (101)
T ss_pred ccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778788887766666655555555443
No 133
>PF07296 TraP: TraP protein; InterPro: IPR009913 This family consists of several bacterial conjugative transfer TraP proteins from Escherichia coli and Salmonella typhimurium. TraP appears to play a minor role in conjugation and may interact with TraB, which varies in sequence along with TraP, in order to stabilise the proposed transmembrane complex formed by the tra operon products [].
Probab=34.75 E-value=1.8e+02 Score=23.31 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=34.2
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 038691 163 TATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTL 207 (221)
Q Consensus 163 s~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~ 207 (221)
+..+...|..| .-|.-|++-.|.=+|-++.-++-..++++|+.|
T Consensus 6 ~~~~a~~a~~~-~Va~vLRWl~W~vky~VI~PlATmaLmalfVlw 49 (202)
T PF07296_consen 6 SSRQAGHALRY-VVARVLRWLFWCVKYAVIWPLATMALMALFVLW 49 (202)
T ss_pred hhHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556555 456779999999999999999998888888887
No 134
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=34.28 E-value=1.4e+02 Score=21.74 Aligned_cols=26 Identities=8% Similarity=-0.077 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 038691 169 NTVRFKRQARRYKSSVCWGNCKLASGLV 196 (221)
Q Consensus 169 ~s~~f~~~a~~l~r~~~w~~~k~~~ii~ 196 (221)
-.....+++++ ++.+|++|.++-+..
T Consensus 54 ~~~~~~~k~~~--~~~~i~kyg~~GL~l 79 (121)
T PF06695_consen 54 FYEWLEKKAEK--KSKKIEKYGFWGLAL 79 (121)
T ss_pred HHHHHHHHHHH--HHHHHHHHhHHHHHH
Confidence 33344444444 566778887554443
No 135
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=33.83 E-value=1.2e+02 Score=18.66 Aligned_cols=44 Identities=18% Similarity=0.428 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRN 169 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~ 169 (221)
+.+..+...+.+++++..+=-..+-+.++.|+.+.+..+.....
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~ 55 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVN 55 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 56778888888888887654455666778888888776654433
No 136
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=33.69 E-value=1.6e+02 Score=20.22 Aligned_cols=17 Identities=6% Similarity=0.161 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhHHHH
Q 038691 133 GEMSHVRSVMIDNIEKI 149 (221)
Q Consensus 133 ~~v~~v~~im~~ni~~~ 149 (221)
+..++.++-+.+.++.+
T Consensus 27 ~~~~~~r~~~~~~~~~a 43 (94)
T PF05957_consen 27 EKADEARDRAEEALDDA 43 (94)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 137
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=33.49 E-value=60 Score=19.65 Aligned_cols=25 Identities=8% Similarity=0.339 Sum_probs=11.9
Q ss_pred hhhhHHHHHHH-HHHHHHHHHHH-Hhc
Q 038691 187 GNCKLASGLVC-VILIIIYVTLA-FYC 211 (221)
Q Consensus 187 ~~~k~~~ii~~-vv~~i~~ii~~-~~c 211 (221)
|+++|.+++++ ++|+++|...+ ..|
T Consensus 2 kk~rwiili~iv~~Cl~lyl~ald~~C 28 (47)
T PRK10299 2 KKFRWVVLVVVVLACLLLWAQVFNMMC 28 (47)
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555443 34455554433 356
No 138
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.48 E-value=1.5e+02 Score=23.92 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhh
Q 038691 131 LKGEMSHVRSVMIDNIEKIVERG 153 (221)
Q Consensus 131 ~~~~v~~v~~im~~ni~~~l~Rg 153 (221)
-.+.++-..+.|.++||..|+..
T Consensus 131 Qse~Mdm~~Emm~daIDdal~~~ 153 (224)
T KOG3230|consen 131 QSEIMDMKEEMMDDAIDDALGDD 153 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 34566777888999999999643
No 139
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.32 E-value=2.7e+02 Score=22.76 Aligned_cols=46 Identities=11% Similarity=0.209 Sum_probs=29.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc
Q 038691 165 TLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTLAFYC 211 (221)
Q Consensus 165 ~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~~~c 211 (221)
.|....... .+|++.=+-|-.|-.+-.+++.+++++++++|.+++.
T Consensus 171 rL~~td~~l-gkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY 216 (220)
T KOG1666|consen 171 RLRETDANL-GKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILY 216 (220)
T ss_pred HHHhchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444 3444444577777778888887777777777776665
No 140
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=32.67 E-value=37 Score=27.58 Aligned_cols=17 Identities=18% Similarity=0.471 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHHH
Q 038691 189 CKLASGLVCVILIIIYV 205 (221)
Q Consensus 189 ~k~~~ii~~vv~~i~~i 205 (221)
.|+-++|.+||+++||+
T Consensus 126 ~K~amLIClIIIAVLfL 142 (227)
T PF05399_consen 126 NKMAMLICLIIIAVLFL 142 (227)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 45555555544444443
No 141
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=32.58 E-value=51 Score=21.35 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=24.0
Q ss_pred HHHHHHhhhhCCCccc-chHHHHHHHHHHHHHHHHHhHHHHHH
Q 038691 110 RILSKQMDHYSNDPNA-DRLNRLKGEMSHVRSVMIDNIEKIVE 151 (221)
Q Consensus 110 ~~l~~~~~~yn~~~~~-dkl~~~~~~v~~v~~im~~ni~~~l~ 151 (221)
...+..+++|+.+|.. ....++++-+++...-=+.|+.++++
T Consensus 17 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~ 59 (67)
T PF01099_consen 17 EEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLE 59 (67)
T ss_dssp HHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456778888655432 55666777666666666666666654
No 142
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=32.42 E-value=22 Score=27.83 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 038691 194 GLVCVILIIIYVTLAFYC 211 (221)
Q Consensus 194 ii~~vv~~i~~ii~~~~c 211 (221)
|++.|++++++||++++|
T Consensus 80 iivgvi~~Vi~Iv~~Iv~ 97 (179)
T PF13908_consen 80 IIVGVICGVIAIVVLIVC 97 (179)
T ss_pred eeeehhhHHHHHHHhHhh
Confidence 333334444455666666
No 143
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.25 E-value=2.9e+02 Score=22.73 Aligned_cols=59 Identities=8% Similarity=0.083 Sum_probs=31.6
Q ss_pred HhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHH-----HHHHHHhhhhHHHHHHHHHHHH
Q 038691 144 DNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRY-----KSSVCWGNCKLASGLVCVILII 202 (221)
Q Consensus 144 ~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l-----~r~~~w~~~k~~~ii~~vv~~i 202 (221)
.+++.+.++-+++..-..|+..+...+..+..+=+.+ .|--||.-+-...++.+.++-+
T Consensus 153 ~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~v~~iQV 216 (236)
T KOG3287|consen 153 VKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMILVGIIQV 216 (236)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHHHhhhhh
Confidence 4555555555556655666666665555554433332 2335777766655554444433
No 144
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=32.00 E-value=26 Score=24.91 Aligned_cols=7 Identities=29% Similarity=0.819 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 038691 201 IIIYVTL 207 (221)
Q Consensus 201 ~i~~ii~ 207 (221)
+++|+|.
T Consensus 76 Vily~Iy 82 (101)
T PF06024_consen 76 VILYAIY 82 (101)
T ss_pred HHHhhhe
Confidence 3344443
No 145
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=31.97 E-value=1.8e+02 Score=20.44 Aligned_cols=20 Identities=5% Similarity=0.074 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 038691 129 NRLKGEMSHVRSVMIDNIEK 148 (221)
Q Consensus 129 ~~~~~~v~~v~~im~~ni~~ 148 (221)
..-+...++|...|-.++|+
T Consensus 31 k~gq~~qe~v~~kld~tlD~ 50 (98)
T PF11166_consen 31 KDGQHDQELVNQKLDRTLDE 50 (98)
T ss_pred HHhHhhHHHHHHHHHhhHHH
Confidence 33344555556666666666
No 146
>PHA03164 hypothetical protein; Provisional
Probab=31.76 E-value=71 Score=21.51 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 038691 189 CKLASGLVCVILIIIYVTLAF 209 (221)
Q Consensus 189 ~k~~~ii~~vv~~i~~ii~~~ 209 (221)
....++-++++.+|+|+|.+.
T Consensus 58 ftFlvLtgLaIamILfiifvl 78 (88)
T PHA03164 58 FTFLVLTGLAIAMILFIIFVL 78 (88)
T ss_pred eehHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555443
No 147
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=31.72 E-value=1.7e+02 Score=23.55 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhH
Q 038691 130 RLKGEMSHVRSVMIDNI 146 (221)
Q Consensus 130 ~~~~~v~~v~~im~~ni 146 (221)
+=+++++...+...+-+
T Consensus 105 ~W~~~i~~~~~~i~~ll 121 (204)
T PF00517_consen 105 QWEKEISNYTGNIYNLL 121 (204)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHH
Confidence 34455554444443333
No 148
>PHA02692 hypothetical protein; Provisional
Probab=31.57 E-value=39 Score=22.32 Aligned_cols=8 Identities=50% Similarity=0.783 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 038691 135 MSHVRSVM 142 (221)
Q Consensus 135 v~~v~~im 142 (221)
+|-|+.+|
T Consensus 24 i~vVksVL 31 (70)
T PHA02692 24 LNIVRTVM 31 (70)
T ss_pred HHHHHHHH
Confidence 33333333
No 149
>PLN03223 Polycystin cation channel protein; Provisional
Probab=31.53 E-value=88 Score=32.65 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLH 167 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~ 167 (221)
|.|.+.++.+-+++..+.++-.++++|++++.++++|-.+|.
T Consensus 1581 ~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~ 1622 (1634)
T PLN03223 1581 DQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLE 1622 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 667788888888999999999999999999999988877664
No 150
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=31.48 E-value=1.6e+02 Score=19.65 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=38.8
Q ss_pred ccCCCCcHHHHHHHHHhhCCCCCCCCeeEEEeCC-eEEEEEE--eCCEEEEEEEcCCC
Q 038691 18 FSAAQTNGNAIARQVIDKLPQGISDRILSYSHDH-YIFHVKR--TDNLTVLCMADDSF 72 (221)
Q Consensus 18 ~~~~~~~~~~~a~~il~~i~~~~~~~k~~~~~~~-~~~~~l~--~~~~~~~~i~d~~~ 72 (221)
.+..-.+|+.+...+-+++.+....-+..++.+| ....-+. ++|-.|+|...+.+
T Consensus 21 ~~~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~g~e~f 78 (80)
T cd01617 21 NRRRFKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYVASGREPF 78 (80)
T ss_pred ChhhhCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEEEECCCCC
Confidence 3333478999999999988741157788899887 5554332 58999999876544
No 151
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=31.43 E-value=67 Score=20.27 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEE--eCCEEEEEEEcCC
Q 038691 23 TNGNAIARQVIDKLPQGISDRILSYSHDHYIFHVKR--TDNLTVLCMADDS 71 (221)
Q Consensus 23 ~~~~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~--~~~~~~~~i~d~~ 71 (221)
.+|+.+-..+-+++... .+-|..|+.+|...+-+- .+|-.|+|...+.
T Consensus 9 ~s~e~lL~~it~~v~l~-~gVr~lyt~~G~~V~~l~~l~dg~~yVa~g~e~ 58 (60)
T PF03607_consen 9 RSFEQLLDEITEKVQLP-SGVRKLYTLDGKRVKSLDELEDGGSYVASGREP 58 (60)
T ss_dssp SSHHHHHHHHHHSSSST-TS-SEEEETTSSEESSGGGS-TTEEEEEESSSS
T ss_pred cCHHHHHHHHHhhcCCC-cccceEECCCCCEeCCHHHHCCCCEEEEEcCCc
Confidence 67889999999988763 358888998886665433 5888999986543
No 152
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.41 E-value=2.4e+02 Score=27.44 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=13.1
Q ss_pred CcchHHHHHHHHHHHHhhcc
Q 038691 73 GWRIPFAFLEDIHQRFVRTY 92 (221)
Q Consensus 73 ~~~~af~fL~~i~~~f~~~~ 92 (221)
+...+++||.+-.+.|++.|
T Consensus 533 ~~~E~l~lL~~a~~vlreeY 552 (717)
T PF10168_consen 533 SPQECLELLSQATKVLREEY 552 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 44556777777766676655
No 153
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=31.37 E-value=2.6e+02 Score=21.98 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 038691 130 RLKGEMSHVRSVMIDNIE 147 (221)
Q Consensus 130 ~~~~~v~~v~~im~~ni~ 147 (221)
+++.+++++-.-+..-+|
T Consensus 102 QVqqeL~~tf~rL~~~Vd 119 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVD 119 (171)
T ss_dssp --------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555554444444443
No 154
>PRK11546 zraP zinc resistance protein; Provisional
Probab=30.80 E-value=2.4e+02 Score=21.49 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=15.4
Q ss_pred CcccchHHHHHHHHHHHHHHHHH
Q 038691 122 DPNADRLNRLKGEMSHVRSVMID 144 (221)
Q Consensus 122 ~~~~dkl~~~~~~v~~v~~im~~ 144 (221)
.|...++.++..|+.+++..|.+
T Consensus 85 ~pD~~kI~aL~kEI~~Lr~kL~e 107 (143)
T PRK11546 85 PPDSSKINAVAKEMENLRQSLDE 107 (143)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888877765543
No 155
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=30.78 E-value=4.2e+02 Score=24.90 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhH
Q 038691 168 RNTVRFKRQARRYKSSVCWGNCKL 191 (221)
Q Consensus 168 ~~s~~f~~~a~~l~r~~~w~~~k~ 191 (221)
..+...++.--..|||.|+-|..=
T Consensus 512 kl~~~~qr~l~etKkKQWC~nC~~ 535 (588)
T KOG3612|consen 512 KLAEEHQRALAETKKKQWCYNCLD 535 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhH
Confidence 444555666677889999888754
No 156
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=30.48 E-value=3.4e+02 Score=23.08 Aligned_cols=42 Identities=7% Similarity=0.247 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHH
Q 038691 167 HRNTVRFKRQARRYKSSVC----WGNCKLASGLVCVILIIIYVTLA 208 (221)
Q Consensus 167 ~~~s~~f~~~a~~l~r~~~----w~~~k~~~ii~~vv~~i~~ii~~ 208 (221)
...+...+...++|.+.+- -+++++++++.++|++++++.++
T Consensus 233 ~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lfv~l~~ 278 (283)
T COG5325 233 ENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLFVSLIK 278 (283)
T ss_pred hhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHHHHHHH
Confidence 3566666677777877653 34456776666665555444333
No 157
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=30.39 E-value=62 Score=23.84 Aligned_cols=26 Identities=19% Similarity=-0.005 Sum_probs=19.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHH
Q 038691 184 VCWGNCKLASGLVCVILIIIYVTLAF 209 (221)
Q Consensus 184 ~~w~~~k~~~ii~~vv~~i~~ii~~~ 209 (221)
.|-=--||+++|++.-++.+|.+++.
T Consensus 18 lw~iItKWyL~IavaSlI~lyy~v~g 43 (139)
T PF10875_consen 18 LWSIITKWYLIIAVASLITLYYTVLG 43 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444689999999888888877653
No 158
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.24 E-value=4e+02 Score=23.85 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=16.3
Q ss_pred hHHHHHHhhhhhHHHHHhhHHHhhhHHHH
Q 038691 145 NIEKIVERGDRLNLLVDKTATLHRNTVRF 173 (221)
Q Consensus 145 ni~~~l~Rge~l~~L~~ks~~L~~~s~~f 173 (221)
++=.+-||+++|+..-++..+..+.....
T Consensus 127 ~~v~~gE~~G~L~~~l~~la~y~e~~~~l 155 (397)
T COG1459 127 AMVAAGERSGNLDEVLQRLAKYLEKQAAL 155 (397)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 34455677777776665555444444333
No 159
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=30.24 E-value=1.3e+02 Score=18.09 Aligned_cols=18 Identities=17% Similarity=0.408 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038691 191 LASGLVCVILIIIYVTLA 208 (221)
Q Consensus 191 ~~~ii~~vv~~i~~ii~~ 208 (221)
+-+.+++++++++++|++
T Consensus 33 vnf~lilicllli~iivm 50 (52)
T TIGR01294 33 INFCLILICLLLICIIVM 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445555565554
No 160
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=30.19 E-value=23 Score=30.07 Aligned_cols=28 Identities=11% Similarity=0.303 Sum_probs=15.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHH-HHHhh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEK-IVERG 153 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~-~l~Rg 153 (221)
+..++++.++-+.-+-|--|=.. +|..|
T Consensus 103 e~~~klEKel~e~~~~~fg~e~~imlksg 131 (295)
T TIGR01478 103 EPMSTIEKELLEKYEEMFGDESHIMLKSG 131 (295)
T ss_pred chhhHHHHHHHHHHHHHhCCccchhhhcC
Confidence 45566666666665555554444 34444
No 161
>PTZ00046 rifin; Provisional
Probab=30.14 E-value=1.1e+02 Score=26.99 Aligned_cols=44 Identities=16% Similarity=0.344 Sum_probs=26.4
Q ss_pred hHHHHHHhhhhCCCcccchHHHHHHHHHHHHHHHHH----hHHHHHHhh
Q 038691 109 SRILSKQMDHYSNDPNADRLNRLKGEMSHVRSVMID----NIEKIVERG 153 (221)
Q Consensus 109 ~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~----ni~~~l~Rg 153 (221)
+|.+++.|+.|+ +.+.+....=.+.+.+.+....| +|+|++-.+
T Consensus 54 DPeMK~Vme~F~-rqTsQRF~EYdERM~~kRqkcKeqCDKeIQKIILKD 101 (358)
T PTZ00046 54 DPEMKSVMENFD-RQTSQRFEEYDERMKEKRQKCKEQCDKEIQKIILKD 101 (358)
T ss_pred cHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 788999999984 44444444444444444444444 777776543
No 162
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.99 E-value=63 Score=23.66 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhH
Q 038691 131 LKGEMSHVRSVMIDNI 146 (221)
Q Consensus 131 ~~~~v~~v~~im~~ni 146 (221)
.+.|-|+.-+-|.+-|
T Consensus 30 le~ENee~~e~L~~kV 45 (118)
T KOG3385|consen 30 LERENEEAAESLQQKV 45 (118)
T ss_pred HHhhhHHHHHHHHHHH
Confidence 3344444444444433
No 163
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=29.90 E-value=75 Score=22.66 Aligned_cols=17 Identities=6% Similarity=-0.105 Sum_probs=9.6
Q ss_pred HHHHhhhhHHHHHHHHH
Q 038691 183 SVCWGNCKLASGLVCVI 199 (221)
Q Consensus 183 ~~~w~~~k~~~ii~~vv 199 (221)
++.|+.++..++++++.
T Consensus 2 ~~~~~~~~~~ii~~~l~ 18 (103)
T PRK14125 2 KLKESKIHVSIFFVLTA 18 (103)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 45677777666444433
No 164
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=29.87 E-value=1.5e+02 Score=25.73 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=35.0
Q ss_pred hHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 038691 145 NIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTLAFYCRDP 214 (221)
Q Consensus 145 ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~~~c~gf 214 (221)
+...-++=+.+.+.|..+-+-.++....+..+...-+-.. =-|.++++|++-|++.++=|++-.|+++
T Consensus 264 ~~~~yLdI~~RvnvLN~Rl~vi~d~l~il~e~ln~~~s~~--lEWivIiLI~~eVllsl~~i~~~~~~~~ 331 (331)
T COG1723 264 AVREYLDINPRVNVLNRRLEVISDLLDILNEQLNHSHSTR--LEWIVIILIGLEVLLSLYNIIVKYIGAL 331 (331)
T ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccce--eEEEehhHHHHHHHHHHHHHHHHHhcCC
Confidence 3444455556666666665555555444443333221110 0234555556666666777777777653
No 165
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=29.79 E-value=99 Score=17.70 Aligned_cols=13 Identities=0% Similarity=0.138 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHH
Q 038691 190 KLASGLVCVILII 202 (221)
Q Consensus 190 k~~~ii~~vv~~i 202 (221)
|-|++.+++.+++
T Consensus 14 r~Wi~F~l~mi~v 26 (38)
T PF09125_consen 14 RGWIAFALAMILV 26 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH
Confidence 4444444444433
No 166
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=29.49 E-value=70 Score=28.41 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=10.4
Q ss_pred HHHHhhhhHHHHHHHHHHH
Q 038691 183 SVCWGNCKLASGLVCVILI 201 (221)
Q Consensus 183 ~~~w~~~k~~~ii~~vv~~ 201 (221)
+..||+.++++++++++++
T Consensus 34 ~~L~r~k~~Il~~~~~~~~ 52 (377)
T PRK10381 34 SVLWKAKKTIIAITFAFAC 52 (377)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666665555544443
No 167
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=29.28 E-value=1.1e+02 Score=28.70 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHHHHHhH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNI 146 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni 146 (221)
+.+..++++++.+.++..+|=
T Consensus 442 ~~i~~l~~~~~sl~~~v~qnr 462 (561)
T PF00429_consen 442 DSISALQEQLTSLAEVVLQNR 462 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCc
Confidence 777888888888888777764
No 168
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=29.14 E-value=1.2e+02 Score=22.80 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=8.5
Q ss_pred cCCCCcchHHHHHHH
Q 038691 69 DDSFGWRIPFAFLED 83 (221)
Q Consensus 69 d~~~~~~~af~fL~~ 83 (221)
|.--|-..|.+||++
T Consensus 19 ~~~~pv~~al~~ld~ 33 (142)
T PF04048_consen 19 DDFNPVELALSLLDD 33 (142)
T ss_pred CCCcHHHHHHHhcCC
Confidence 344455666666654
No 169
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=28.95 E-value=2e+02 Score=26.52 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhHHHHHHhh
Q 038691 134 EMSHVRSVMIDNIEKIVERG 153 (221)
Q Consensus 134 ~v~~v~~im~~ni~~~l~Rg 153 (221)
++.++-....+|++.+...+
T Consensus 163 ~l~~~l~~vq~~~~~a~~~l 182 (526)
T KOG4433|consen 163 ELLQALRRVQGNAETAVGQL 182 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333334444444444333
No 170
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=28.90 E-value=3.6e+02 Score=22.83 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=15.3
Q ss_pred HHHHhHHHHHHhhhhhHHHHHhhHHHh
Q 038691 141 VMIDNIEKIVERGDRLNLLVDKTATLH 167 (221)
Q Consensus 141 im~~ni~~~l~Rge~l~~L~~ks~~L~ 167 (221)
....+.+++-++.++++..+++.+.++
T Consensus 27 ~~~~~~~~~~e~~~~~~e~~~kaeeaq 53 (306)
T PF04888_consen 27 ASEAQEKKAEEKAEEIEEAQEKAEEAQ 53 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566666666666666665443
No 171
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=28.83 E-value=52 Score=22.31 Aligned_cols=8 Identities=0% Similarity=0.708 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 038691 197 CVILIIIY 204 (221)
Q Consensus 197 ~vv~~i~~ 204 (221)
++|++++|
T Consensus 13 lvIvlllF 20 (78)
T PRK00720 13 LAVVLLLF 20 (78)
T ss_pred HHHHHHHh
Confidence 33333333
No 172
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=28.78 E-value=2.2e+02 Score=20.34 Aligned_cols=18 Identities=11% Similarity=0.121 Sum_probs=9.6
Q ss_pred HHHhhhhHHHHHHHHHHH
Q 038691 184 VCWGNCKLASGLVCVILI 201 (221)
Q Consensus 184 ~~w~~~k~~~ii~~vv~~ 201 (221)
.-||++...+++-+++.+
T Consensus 40 i~~KKyg~~~il~~l~~l 57 (104)
T PF12420_consen 40 IIFKKYGLIFILPFLVPL 57 (104)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 345566655555554443
No 173
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.52 E-value=2.2e+02 Score=23.65 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=16.4
Q ss_pred HHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHH
Q 038691 147 EKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKS 182 (221)
Q Consensus 147 ~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 182 (221)
+.+-+-|.-||+|..--+....--..=+++..++.+
T Consensus 173 ~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 173 EELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444444333333344444444
No 174
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=28.39 E-value=1.4e+02 Score=20.33 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=15.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHH
Q 038691 181 KSSVCWGNCKLASGLVCVILIIIYVT 206 (221)
Q Consensus 181 ~r~~~w~~~k~~~ii~~vv~~i~~ii 206 (221)
++..|-+|.+++.++.++=.++-|+.
T Consensus 3 ~~~yWr~n~rl~~~lL~iW~vvsfg~ 28 (81)
T PF13937_consen 3 ARAYWRKNLRLIAILLAIWFVVSFGV 28 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777666555544444443
No 175
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=28.37 E-value=2.8e+02 Score=26.13 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=37.4
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHH
Q 038691 122 DPNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKR 175 (221)
Q Consensus 122 ~~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~ 175 (221)
=|+.+++...++.+++++.-=.+|...+.++-+.++.|.............|++
T Consensus 187 Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~ 240 (555)
T TIGR03545 187 LPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKN 240 (555)
T ss_pred cCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355688888888888888743356667778888888777776665544444443
No 176
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=28.16 E-value=2.8e+02 Score=21.39 Aligned_cols=15 Identities=20% Similarity=0.507 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhh
Q 038691 175 RQARRYKSSVCWGNC 189 (221)
Q Consensus 175 ~~a~~l~r~~~w~~~ 189 (221)
.+..+++.-.-|+.-
T Consensus 80 t~gERl~allsWrdP 94 (156)
T PF08372_consen 80 TQGERLQALLSWRDP 94 (156)
T ss_pred HHHHHHHHhhccCCc
Confidence 344555555666543
No 177
>PF03238 ESAG1: ESAG protein; InterPro: IPR004922 Trypanosoma brucei is the causative agent of sleeping sickness in humans and nagana in cattle. The parasite lives extracellularly in the blood and tissue fluids of the mammalian host, and is transmitted by the bite of infected tsetse. Each variant surface glycoprotein (Vsg) expression site (ES) in bloodstream-form T. brucei is a polycistronic transcription unit containing several distinct expression site-associated genes (esag), in addition to a single vsg gene. They are co-transcribed with the gene encoding the VSG protein, forming the surface coat of the parasite. ESAG1 genes from different ESs encode a highly polymorphic family of membrane-associated glycoproteins, whose function is unknown [].
Probab=28.13 E-value=2e+02 Score=23.43 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=36.0
Q ss_pred HHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 038691 143 IDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCV 198 (221)
Q Consensus 143 ~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~v 198 (221)
.+.++|++.=|..+.+|+.|...|=..-..-.+.-|+.=--...+--|+|.-++=+
T Consensus 6 hdKLEKLISyGN~MGDLVaKvGGLFAeVNESVRaVRkeiP~ALikaNKYYTAiAEI 61 (231)
T PF03238_consen 6 HDKLEKLISYGNEMGDLVAKVGGLFAEVNESVRAVRKEIPGALIKANKYYTAIAEI 61 (231)
T ss_pred hhhHHHHHHcCcchhhHHHhccchhHHHHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888765555544444443334455666666665543
No 178
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=28.07 E-value=1e+02 Score=26.68 Aligned_cols=25 Identities=8% Similarity=0.055 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCc
Q 038691 193 SGLVCVILIIIYVTLAFYCRDPLWRY 218 (221)
Q Consensus 193 ~ii~~vv~~i~~ii~~~~c~gf~~~~ 218 (221)
+.-++.++.++|++..+.| |+++.|
T Consensus 57 l~~~~~~~~~~y~~F~~~W-GlNY~R 81 (318)
T PF12725_consen 57 LLNILFFLSVLYFLFYLLW-GLNYYR 81 (318)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhhcCC
Confidence 4444555556677777778 677643
No 179
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=27.97 E-value=4.3e+02 Score=23.48 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=25.9
Q ss_pred HHHHhhhhCCCcccchHHHHHHHHHHHHHHHHHhHHHHHHh
Q 038691 112 LSKQMDHYSNDPNADRLNRLKGEMSHVRSVMIDNIEKIVER 152 (221)
Q Consensus 112 l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~~~l~R 152 (221)
+..+...| .|...++..++.++++++.-+.+.+.++...
T Consensus 270 l~~l~~~y--~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~ 308 (444)
T TIGR03017 270 LAELSQRL--GPNHPQYKRAQAEINSLKSQLNAEIKKVTSS 308 (444)
T ss_pred HHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455 2455778888888888888887776665443
No 180
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=27.82 E-value=1.3e+02 Score=20.63 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=20.2
Q ss_pred hHHHHHhhHHHhhhHHHHHHHHHHHHHHH
Q 038691 156 LNLLVDKTATLHRNTVRFKRQARRYKSSV 184 (221)
Q Consensus 156 l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 184 (221)
||.|++|.+.|...-..+-...++.|+.+
T Consensus 42 LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 42 LDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777776666666543
No 181
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=27.75 E-value=1.3e+02 Score=21.39 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=30.6
Q ss_pred HHHhHHHHHHhhhhhHHHHHh--hHHHhhhHHHHHHHHHHHHH
Q 038691 142 MIDNIEKIVERGDRLNLLVDK--TATLHRNTVRFKRQARRYKS 182 (221)
Q Consensus 142 m~~ni~~~l~Rge~l~~L~~k--s~~L~~~s~~f~~~a~~l~r 182 (221)
+...+..+|.++..|+.++.- +++|+.........|+.++.
T Consensus 3 v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e 45 (113)
T PF00306_consen 3 VAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE 45 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 345667777888888887776 66788888777777877776
No 182
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=27.74 E-value=1.1e+02 Score=16.84 Aligned_cols=12 Identities=0% Similarity=-0.296 Sum_probs=4.8
Q ss_pred HHHHhhhhHHHH
Q 038691 183 SVCWGNCKLASG 194 (221)
Q Consensus 183 ~~~w~~~k~~~i 194 (221)
+.|++-.++.-+
T Consensus 3 ~~~~~~H~~~g~ 14 (34)
T PF13172_consen 3 KFWRKIHRWLGL 14 (34)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 183
>COG4499 Predicted membrane protein [Function unknown]
Probab=27.46 E-value=83 Score=28.07 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=16.3
Q ss_pred HHHHHHhhCCCCCCCCee-EEEeCCeEEEEEEe
Q 038691 28 IARQVIDKLPQGISDRIL-SYSHDHYIFHVKRT 59 (221)
Q Consensus 28 ~a~~il~~i~~~~~~~k~-~~~~~~~~~~~l~~ 59 (221)
+-..++++.|| .-.+. +...|.+.+||-+.
T Consensus 40 ~~~~lld~~~~--f~~~eit~~~Ds~vIsy~i~ 70 (434)
T COG4499 40 LLAELLDKSPP--FIVAEITEDNDSFVISYPIP 70 (434)
T ss_pred HHHHHhccCCC--ccceeecccCceeEEEecCc
Confidence 44667777666 22222 23445677777553
No 184
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=27.34 E-value=76 Score=22.50 Aligned_cols=31 Identities=13% Similarity=0.330 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038691 172 RFKRQARRYKSSVCWGNCKLASGLVCVILII 202 (221)
Q Consensus 172 ~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i 202 (221)
+|-..+=.....-.|||+-+.+...++.+++
T Consensus 35 ~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~ 65 (103)
T PF06422_consen 35 DYLEESYGYSYSHRWRNFGILIAFWIFFIVL 65 (103)
T ss_pred HHHhhhccccccchhhhHHHHHHHHHHHHHH
Confidence 3444444445556788887655554444333
No 185
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=27.10 E-value=1.4e+02 Score=20.63 Aligned_cols=6 Identities=17% Similarity=0.080 Sum_probs=2.3
Q ss_pred HHHHHH
Q 038691 202 IIYVTL 207 (221)
Q Consensus 202 i~~ii~ 207 (221)
.+++++
T Consensus 27 a~~~v~ 32 (97)
T PF04999_consen 27 ALGVVY 32 (97)
T ss_pred HHHHHH
Confidence 333443
No 186
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=27.08 E-value=66 Score=25.30 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 038691 189 CKLASGLVCVILIIIYVTLAFYCRDPLW 216 (221)
Q Consensus 189 ~k~~~ii~~vv~~i~~ii~~~~c~gf~~ 216 (221)
.|+..+|++..+++..++++++.+.+++
T Consensus 82 lk~t~lI~~alAfl~Cv~~Lv~YKa~wY 109 (186)
T PF06387_consen 82 LKVTRLIAFALAFLGCVVFLVMYKAIWY 109 (186)
T ss_pred cchhHHHHHHHHHHHHHHHHHhheeeee
Confidence 4555555555555555555555555555
No 187
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=27.05 E-value=3.8e+02 Score=27.90 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHH
Q 038691 130 RLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSS 183 (221)
Q Consensus 130 ~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~ 183 (221)
.+++..+.+++.+.+-.+....-.++.+.|.+.++.|-.+|..-...-+.|.+.
T Consensus 1665 ~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~ 1718 (1758)
T KOG0994|consen 1665 ILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELE 1718 (1758)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445556666666666665555555555554433
No 188
>COG1969 HyaC Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]
Probab=26.56 E-value=53 Score=26.55 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=26.4
Q ss_pred HHHHHHHHHHh----hhhHHHHHH-------------HH-HHHHHHHHHHHhcCCCCC
Q 038691 177 ARRYKSSVCWG----NCKLASGLV-------------CV-ILIIIYVTLAFYCRDPLW 216 (221)
Q Consensus 177 a~~l~r~~~w~----~~k~~~ii~-------------~v-v~~i~~ii~~~~c~gf~~ 216 (221)
.....|+.||+ .+|+++++. .+ .......|++.+|.||.+
T Consensus 95 ~~~fw~k~w~eg~~~~ik~Ylfl~kkPh~~~~~NPia~~AyFf~~lmiv~MiltGf~L 152 (227)
T COG1969 95 IVPFWRKAWWEGVWYQIKWYLFLGKKPHTKGGHNPIAQVAYFFYFLMIVFMILTGFAL 152 (227)
T ss_pred hhhhhHHHHHHHHHHHhhhheeecCCCccccccCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 35678899999 888888653 22 222344666778877754
No 189
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=25.88 E-value=1.1e+02 Score=26.53 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVM 142 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im 142 (221)
+.|.+++.+++.++.+|
T Consensus 230 ~eL~~iqaqL~tvks~m 246 (372)
T COG3524 230 DELIVIQAQLDTVKSVM 246 (372)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67778889999999999
No 190
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=25.71 E-value=1.8e+02 Score=23.22 Aligned_cols=77 Identities=14% Similarity=0.242 Sum_probs=36.2
Q ss_pred cCCCCcchHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHhhhhCCCccc-chHHHHHHHHHHHHHHHHHhHH
Q 038691 69 DDSFGWRIPFAFLEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHYSNDPNA-DRLNRLKGEMSHVRSVMIDNIE 147 (221)
Q Consensus 69 d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~-dkl~~~~~~v~~v~~im~~ni~ 147 (221)
+-+|.+..--..|.|.++...+...+. +...=..-++.....| .+|+= +.+-.-+.+..+.-.-+.+.++
T Consensus 108 ~fTfD~~~L~~~L~ec~~~L~~lv~~H--------LT~KS~~Ri~~vF~~f-~~~efL~~lf~~~~~~~~~L~~i~~~Ln 178 (186)
T PF05527_consen 108 DFTFDRNYLSKLLKECRDLLHQLVEPH--------LTPKSHGRIDHVFNFF-SDPEFLDALFSPDEEYRDHLGKICDGLN 178 (186)
T ss_dssp TS---HHHHHHHHHHHHHHHHHHHTTT--------S-HHHHHHHHHHHHHH-T-HHHHHHHTSG--GGHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHh--------CChhhHHHHHHHHHhh-CChHHHHHHhCcccchHHHHHHHHHHHH
Confidence 344454444555555555544332211 1111123455556666 44432 3333334455666667778889
Q ss_pred HHHHhhh
Q 038691 148 KIVERGD 154 (221)
Q Consensus 148 ~~l~Rge 154 (221)
+++++|.
T Consensus 179 klld~g~ 185 (186)
T PF05527_consen 179 KLLDEGS 185 (186)
T ss_dssp HHHHTT-
T ss_pred HHHhCCC
Confidence 9999885
No 191
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=25.53 E-value=48 Score=28.49 Aligned_cols=54 Identities=20% Similarity=0.396 Sum_probs=28.4
Q ss_pred hHHHHHHhhhhCCCcccchHHHHHHHHHHHHHHHH----HhHHHHHHhhhhhH--HHHHhhH
Q 038691 109 SRILSKQMDHYSNDPNADRLNRLKGEMSHVRSVMI----DNIEKIVERGDRLN--LLVDKTA 164 (221)
Q Consensus 109 ~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~----~ni~~~l~Rge~l~--~L~~ks~ 164 (221)
+|.+++.|+.|| +.+.....+=++.+.+.++... .+|.|++-. ++|| .|.||.|
T Consensus 34 DPeMK~Vme~F~-rqTsQRF~EYdErm~~kRqkcKEqcDKeIQKIIlK-DKiEKKSladKvE 93 (299)
T PF02009_consen 34 DPEMKSVMENFD-RQTSQRFEEYDERMQEKRQKCKEQCDKEIQKIILK-DKIEKKSLADKVE 93 (299)
T ss_pred cHHHHHHHHHHH-HHHHHHHHHHHhhhhhhHHHHHHHhccccceeecc-cchhhhhHHHHHH
Confidence 688888888884 3333344443444433333333 466666543 2343 5555555
No 192
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=25.51 E-value=1.4e+02 Score=16.95 Aligned_cols=18 Identities=11% Similarity=0.427 Sum_probs=12.5
Q ss_pred HHHHHHHhHHHHHHhhhh
Q 038691 138 VRSVMIDNIEKIVERGDR 155 (221)
Q Consensus 138 v~~im~~ni~~~l~Rge~ 155 (221)
-++.+...||..|++|++
T Consensus 10 ~~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 10 RKEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHcCCH
Confidence 345666788888888865
No 193
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=25.47 E-value=2.1e+02 Score=21.76 Aligned_cols=33 Identities=21% Similarity=0.520 Sum_probs=16.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 038691 123 PNADRLNRLKGEMSHVRSVMIDNIEKIVERGDR 155 (221)
Q Consensus 123 ~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~ 155 (221)
|.-+.+.....+++.-+.--.+-+...|++|+.
T Consensus 48 P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 48 PIIKEIDKLNVELDRPRQEEIERLKELLEKGKE 80 (147)
T ss_pred hHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH
Confidence 333455555555555533333445555555644
No 194
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.27 E-value=2e+02 Score=18.72 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=17.2
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 038691 163 TATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILII 202 (221)
Q Consensus 163 s~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i 202 (221)
..++..+-.....+.+.+-| .-+..++.+++.++
T Consensus 36 i~~~~~~l~~I~~n~kW~~r------~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 36 IKNLNKQLEKIKSNTKWIWR------TIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 34555555555555555544 33455555555444
No 195
>PF15106 TMEM156: TMEM156 protein family
Probab=25.16 E-value=45 Score=27.08 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=13.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Q 038691 184 VCWGNCKLASGLVCVILIIIYVTL 207 (221)
Q Consensus 184 ~~w~~~k~~~ii~~vv~~i~~ii~ 207 (221)
++--++.||+++.+|.++++.+|+
T Consensus 171 ~CsmKITWYvLVllVfiflii~iI 194 (226)
T PF15106_consen 171 TCSMKITWYVLVLLVFIFLIILII 194 (226)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHH
Confidence 454456677666665554444443
No 196
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.96 E-value=2.4e+02 Score=19.46 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=19.3
Q ss_pred HHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 038691 159 LVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVC 197 (221)
Q Consensus 159 L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~ 197 (221)
|++.-..+........+.-+.|++ .|-|-+.+.++
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~Lrk----ENrK~~~ls~~ 75 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRK----ENRKSMLLSVA 75 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHH----hhhhhHHHHHH
Confidence 444445566666666666666655 35555444443
No 197
>PHA01811 hypothetical protein
Probab=24.96 E-value=1.1e+02 Score=19.88 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=15.5
Q ss_pred CCeeEEEeCCeEEEEEEeC
Q 038691 42 DRILSYSHDHYIFHVKRTD 60 (221)
Q Consensus 42 ~~k~~~~~~~~~~~~l~~~ 60 (221)
+.-.++...||.+||+-++
T Consensus 4 ddivtlrvkgyi~hyldd~ 22 (78)
T PHA01811 4 DDIVTLRVKGYILHYLDDD 22 (78)
T ss_pred ccEEEEEEeeEEEEEEcCc
Confidence 5667888899999998764
No 198
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=24.88 E-value=4e+02 Score=21.99 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=6.9
Q ss_pred CcchHHHHHHHHH
Q 038691 73 GWRIPFAFLEDIH 85 (221)
Q Consensus 73 ~~~~af~fL~~i~ 85 (221)
|....-.||+++.
T Consensus 103 P~~~~~~~l~~l~ 115 (262)
T PF14257_consen 103 PADKFDSFLDELS 115 (262)
T ss_pred CHHHHHHHHHHHh
Confidence 4444455666655
No 199
>PHA03386 P10 fibrous body protein; Provisional
Probab=24.72 E-value=1.6e+02 Score=20.63 Aligned_cols=14 Identities=7% Similarity=0.399 Sum_probs=8.6
Q ss_pred chHHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVR 139 (221)
Q Consensus 126 dkl~~~~~~v~~v~ 139 (221)
+|+..+|.+|++++
T Consensus 19 ~KVdaLQ~qV~dv~ 32 (94)
T PHA03386 19 TKVDALQTQLNGLE 32 (94)
T ss_pred hHHHHHHHHHHHHH
Confidence 46666666666655
No 200
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=24.62 E-value=60 Score=29.31 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=17.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 038691 186 WGNCKLASGLVCVILIIIYVTL 207 (221)
Q Consensus 186 w~~~k~~~ii~~vv~~i~~ii~ 207 (221)
|+++.+|.++++.|+++.++.|
T Consensus 406 ~~~~~LW~~Lv~gV~vL~~mA~ 427 (429)
T PF13163_consen 406 WKRWLLWGALVLGVAVLGGMAW 427 (429)
T ss_pred hhhhHHHHHHHHHHHHHHHHhe
Confidence 7888888888888888777665
No 201
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=24.39 E-value=4.4e+02 Score=22.76 Aligned_cols=37 Identities=11% Similarity=0.351 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHhhhh
Q 038691 77 PFAFLEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHY 119 (221)
Q Consensus 77 af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y 119 (221)
+-.||+.+.++|....... .++. +.....|+.+|.+|
T Consensus 246 ~~~~Ldklh~eit~~LEkI--~SRE----K~lNnqL~~l~q~f 282 (384)
T KOG0972|consen 246 VGPYLDKLHKEITKALEKI--ASRE----KSLNNQLASLMQKF 282 (384)
T ss_pred hhHHHHHHHHHHHHHHHHH--HHHH----HHHHHHHHHHHHHH
Confidence 4578888888886554311 1122 22344566666666
No 202
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=24.33 E-value=1.3e+02 Score=26.70 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=23.6
Q ss_pred HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 038691 157 NLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGL 195 (221)
Q Consensus 157 ~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii 195 (221)
|+..+|+.+---.++.|-.+-+.-+|.+|-|.+++-++-
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (379)
T PRK12430 104 DEVIKKTNDTLLQKNNFNRSLKNFSKTSWKKTMFYRIIP 142 (379)
T ss_pred hHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 344455555445556676666667777777777666553
No 203
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel). Isoforms A and B show antibacterial activity against Gram-positive bacteria, while isoform B is additionally active against the fungus Fusarium oxysporum and a Gram-negative bacterium, Escherichia coli (streptomycin resistant strain D31) []. Myticin-prepro is the precursor peptide. The mature molecule, named myticin, consists of 40 residues, with four intramolecular disulphide bridges and a cysteine array in the primary structure different from that of previously characterised cysteine-rich antimicrobial peptides. The first 20 amino acids are a putative signal peptide, and the antimicrobial peptide sequence is a 36-residue C-terminal extension. Such a structure suggests that myticins are synthesised as prepro-proteins that are then processed by various proteolytic events before storage in the haemocytes as the active peptide. Myticin precursors are expressed mainly in the haemocytes. ; PDB: 2EEM_A.
Probab=24.26 E-value=25 Score=24.48 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 038691 189 CKLASGLVCVILIIIYVT 206 (221)
Q Consensus 189 ~k~~~ii~~vv~~i~~ii 206 (221)
+|..||++++|++++.+.
T Consensus 1 MKatIlLAv~vAViv~v~ 18 (98)
T PF10690_consen 1 MKATILLAVVVAVIVGVQ 18 (98)
T ss_dssp ------------------
T ss_pred Cccccccccccccccccc
Confidence 366778888887777643
No 204
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=24.06 E-value=72 Score=22.19 Aligned_cols=6 Identities=17% Similarity=1.087 Sum_probs=2.2
Q ss_pred HHHHHH
Q 038691 199 ILIIIY 204 (221)
Q Consensus 199 v~~i~~ 204 (221)
|+++||
T Consensus 15 IvLLlF 20 (89)
T PRK03554 15 IVVLLF 20 (89)
T ss_pred HHHHHh
Confidence 333333
No 205
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=24.05 E-value=1.5e+02 Score=26.10 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=23.0
Q ss_pred hHHHHHHhhhhCCCcccchHHHHHHHHHHHHHHHH----HhHHHHHHh
Q 038691 109 SRILSKQMDHYSNDPNADRLNRLKGEMSHVRSVMI----DNIEKIVER 152 (221)
Q Consensus 109 ~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~----~ni~~~l~R 152 (221)
+|.+++.|+.|+ +..++....=.+.+.+.+.... .+|+|++-.
T Consensus 57 DPeMK~Vm~nF~-rqTsQRF~EYdERM~~kRqKcKeqCDKeIQKIILK 103 (353)
T TIGR01477 57 DPEMKSVMEQFD-RQTSQRFEEYDERMQEKRQKCKEQCDKEIQKIILK 103 (353)
T ss_pred cHHHHHHHHHHh-HHHHHHHHhHHHHHHHhhhhhHHhhchHHHHHHHH
Confidence 678888888883 4333344333333333333333 366666644
No 206
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=24.03 E-value=1.7e+02 Score=17.58 Aligned_cols=27 Identities=7% Similarity=0.361 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 038691 128 LNRLKGEMSHVRSVMIDNIEKIVERGD 154 (221)
Q Consensus 128 l~~~~~~v~~v~~im~~ni~~~l~Rge 154 (221)
...++.+++.++.-|.++++.+-.|=.
T Consensus 5 ~~~ie~dIe~tR~~La~tvd~L~~r~~ 31 (49)
T PF12277_consen 5 PDEIERDIERTRAELAETVDELAARLS 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 568999999999999998888766643
No 207
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=23.88 E-value=1.2e+02 Score=22.76 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=12.8
Q ss_pred HHHHHhhhhHHHHHHHHHHH
Q 038691 182 SSVCWGNCKLASGLVCVILI 201 (221)
Q Consensus 182 r~~~w~~~k~~~ii~~vv~~ 201 (221)
..-||++....+.++++++.
T Consensus 67 ~~~~~~r~~~~~pl~aLv~g 86 (131)
T PF12279_consen 67 GGSWWRRLGLALPLLALVAG 86 (131)
T ss_pred CccHHHHHHHHHHHHHHHHH
Confidence 45688888866666555543
No 208
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=23.83 E-value=3.5e+02 Score=20.99 Aligned_cols=13 Identities=8% Similarity=0.529 Sum_probs=5.1
Q ss_pred hhHHHHHHHHHHH
Q 038691 168 RNTVRFKRQARRY 180 (221)
Q Consensus 168 ~~s~~f~~~a~~l 180 (221)
+......+...+.
T Consensus 208 ~~~~~~~~~~~~~ 220 (275)
T PF00664_consen 208 KALEKYRKASFKY 220 (275)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344433333
No 209
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=23.76 E-value=1.3e+02 Score=24.68 Aligned_cols=20 Identities=5% Similarity=-0.041 Sum_probs=10.3
Q ss_pred HHHHHhhhhHHHHHHHHHHH
Q 038691 182 SSVCWGNCKLASGLVCVILI 201 (221)
Q Consensus 182 r~~~w~~~k~~~ii~~vv~~ 201 (221)
.++|.+++|.+.++++++++
T Consensus 27 ~~~~~k~~r~~Al~alil~i 46 (218)
T PF10039_consen 27 FRMWRKYKRAIALAALILFI 46 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555544443
No 210
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.76 E-value=3.6e+02 Score=22.92 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHH
Q 038691 127 RLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQAR 178 (221)
Q Consensus 127 kl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~ 178 (221)
.|.++..-+..+|+...+-=..+=.-.+.|+.+.++++.+...-..--++++
T Consensus 219 NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~ 270 (273)
T KOG3065|consen 219 NLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAK 270 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHH
Confidence 3444444444444444333334445556788888888887644433333333
No 211
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=23.69 E-value=2.3e+02 Score=18.79 Aligned_cols=51 Identities=10% Similarity=0.274 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHH
Q 038691 130 RLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRY 180 (221)
Q Consensus 130 ~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l 180 (221)
.+...-++.+..+.+|..+++.-.+.|..|......|...-......-.++
T Consensus 34 ~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 34 EIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555667777888889999999999999988888887776665544433
No 212
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=23.55 E-value=3.5e+02 Score=20.90 Aligned_cols=11 Identities=18% Similarity=0.151 Sum_probs=4.1
Q ss_pred HHHhhhhhHHH
Q 038691 149 IVERGDRLNLL 159 (221)
Q Consensus 149 ~l~Rge~l~~L 159 (221)
..+.|+.-++.
T Consensus 36 ~~~~G~sEeei 46 (181)
T PF08006_consen 36 AGEEGKSEEEI 46 (181)
T ss_pred hhhCCCCHHHH
Confidence 33344333333
No 213
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=23.36 E-value=1.2e+02 Score=25.28 Aligned_cols=27 Identities=15% Similarity=-0.100 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038691 177 ARRYKSSVCWGNCKLASGLVCVILIII 203 (221)
Q Consensus 177 a~~l~r~~~w~~~k~~~ii~~vv~~i~ 203 (221)
+.+.+--.||+.+.+++++++.++++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (249)
T PRK15348 209 ANKGKVVKWLMKYPYQLMLSLTGLLLG 235 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445579999998888887765443
No 214
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=23.27 E-value=4.7e+02 Score=22.26 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=11.9
Q ss_pred HHHHHhHHHHHHh-hhhhHHHHHh
Q 038691 140 SVMIDNIEKIVER-GDRLNLLVDK 162 (221)
Q Consensus 140 ~im~~ni~~~l~R-ge~l~~L~~k 162 (221)
..+.+++..++++ ...+..++..
T Consensus 297 ~~i~~~l~~~v~~~~~~i~~~V~~ 320 (367)
T PF04286_consen 297 RFIENLLERIVESNHIDIGEIVEE 320 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666 3344444443
No 215
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=22.83 E-value=1.2e+02 Score=26.30 Aligned_cols=18 Identities=17% Similarity=0.051 Sum_probs=9.2
Q ss_pred HHHHhhhhHHHHHHHHHH
Q 038691 183 SVCWGNCKLASGLVCVIL 200 (221)
Q Consensus 183 ~~~w~~~k~~~ii~~vv~ 200 (221)
...|++.++++.++++++
T Consensus 25 ~~L~r~k~~Ii~~~~~~~ 42 (325)
T PRK15471 25 VQLWRGKMTIIISVIVAI 42 (325)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 455666655554444333
No 216
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=22.73 E-value=1.1e+02 Score=19.20 Aligned_cols=14 Identities=29% Similarity=0.038 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 038691 191 LASGLVCVILIIIY 204 (221)
Q Consensus 191 ~~~ii~~vv~~i~~ 204 (221)
+|+|+++|+.+|+-
T Consensus 5 ~wlIIviVlgvIig 18 (55)
T PF11446_consen 5 PWLIIVIVLGVIIG 18 (55)
T ss_pred hhHHHHHHHHHHHh
Confidence 44555555555444
No 217
>PF13044 DUF3904: Protein of unknown function (DUF3904)
Probab=22.67 E-value=81 Score=26.48 Aligned_cols=37 Identities=5% Similarity=0.185 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHhc
Q 038691 175 RQARRYKSSVCWGNCKLASGLVCVILII-IYVTLAFYC 211 (221)
Q Consensus 175 ~~a~~l~r~~~w~~~k~~~ii~~vv~~i-~~ii~~~~c 211 (221)
.+-+.+.-.-||.-+--|+|++++|+++ +|..-+|.|
T Consensus 398 d~ikevtgtswwmvmihyiivgliviv~vv~glklwgc 435 (436)
T PF13044_consen 398 DNIKEVTGTSWWMVMIHYIIVGLIVIVVVVFGLKLWGC 435 (436)
T ss_pred cchhhccCcchHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 3445555566887777777777766544 344444444
No 218
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.61 E-value=4.3e+02 Score=21.59 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHh--------hhhhHHHHHh---hHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 038691 128 LNRLKGEMSHVRSVMIDNIEKIVER--------GDRLNLLVDK---TATLHRNTVRFKRQARRYKSSVCWGNCKLASGL 195 (221)
Q Consensus 128 l~~~~~~v~~v~~im~~ni~~~l~R--------ge~l~~L~~k---s~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii 195 (221)
++++++.-++++. .+|+.++.+- -++|+++..+ .+.|+..+..+...+++-+.....=|.+..+.-
T Consensus 120 IQk~Kk~ynd~r~--~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~ 196 (216)
T KOG0862|consen 120 IQKTKKRYNDTRS--QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRK 196 (216)
T ss_pred HHHHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHH
Confidence 4667777776654 3444433321 1234444433 345567777777777666655554455444443
No 219
>COG5547 Small integral membrane protein [Function unknown]
Probab=22.37 E-value=1.2e+02 Score=19.27 Aligned_cols=16 Identities=19% Similarity=-0.240 Sum_probs=8.3
Q ss_pred HHhhhhHHHHHHHHHH
Q 038691 185 CWGNCKLASGLVCVIL 200 (221)
Q Consensus 185 ~w~~~k~~~ii~~vv~ 200 (221)
|.+.+|+=++.+++.+
T Consensus 3 flk~fkypIIgglvgl 18 (62)
T COG5547 3 FLKKFKYPIIGGLVGL 18 (62)
T ss_pred HHHHhccchHHHHHHH
Confidence 4555665555444433
No 220
>PF10853 DUF2650: Protein of unknown function (DUF2650); InterPro: IPR022559 This region is found in proteins with unknown function in metazoa.
Probab=22.19 E-value=1.2e+02 Score=17.53 Aligned_cols=19 Identities=11% Similarity=0.042 Sum_probs=11.1
Q ss_pred HHHHhhhhHHHHHHHHHHH
Q 038691 183 SVCWGNCKLASGLVCVILI 201 (221)
Q Consensus 183 ~~~w~~~k~~~ii~~vv~~ 201 (221)
+.+.-+...|+++.+++++
T Consensus 18 ~eCCf~lq~Wv~v~l~v~~ 36 (38)
T PF10853_consen 18 KECCFRLQIWVIVLLAVLG 36 (38)
T ss_pred HhHHHHHHHHHHHHHHHHh
Confidence 3445566777766665543
No 221
>PHA02911 C-type lectin-like protein; Provisional
Probab=22.15 E-value=3e+02 Score=22.33 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=18.0
Q ss_pred HhhhhhHHHHHhhHHHhhhHHHHHH
Q 038691 151 ERGDRLNLLVDKTATLHRNTVRFKR 175 (221)
Q Consensus 151 ~Rge~l~~L~~ks~~L~~~s~~f~~ 175 (221)
+|-..+|.|++++.-+.++|.-+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (213)
T PHA02911 2 EMLGPIEVLEEKMKFFADASSIYQK 26 (213)
T ss_pred CccccHHHHHHHHHHHHhhhhhhhh
Confidence 4556788888888777777766653
No 222
>PTZ00370 STEVOR; Provisional
Probab=22.02 E-value=40 Score=28.72 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHHHHHHHhHHH-HHHhhhh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEK-IVERGDR 155 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~-~l~Rge~ 155 (221)
+..++++.++-+.-+-|--|=.. ++..|--
T Consensus 102 e~k~klEKel~e~~ee~fg~~~~imlksg~~ 132 (296)
T PTZ00370 102 EPMSTLEKELLETYEEMFGDESDIMLKSGMY 132 (296)
T ss_pred chhHHHHHHHHHHHHHHhcCccchhhhcCCC
Confidence 55667777777666666555544 4554433
No 223
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.98 E-value=3.2e+02 Score=22.12 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHH-HHHhhh
Q 038691 168 RNTVRFKRQARRYKSS-VCWGNC 189 (221)
Q Consensus 168 ~~s~~f~~~a~~l~r~-~~w~~~ 189 (221)
..=..|+..|...+.+ |||.-.
T Consensus 167 ~RE~~FR~tSES~NsRvm~Wsv~ 189 (215)
T KOG1690|consen 167 EREETFRDTSESANSRVMWWSVA 189 (215)
T ss_pred HHHHHHHhhhhhhcceeeehhHH
Confidence 3335677777666644 566433
No 224
>COG3771 Predicted membrane protein [Function unknown]
Probab=21.90 E-value=41 Score=23.30 Aligned_cols=15 Identities=7% Similarity=-0.133 Sum_probs=9.6
Q ss_pred HHHHHHHHhcCCCCC
Q 038691 202 IIYVTLAFYCRDPLW 216 (221)
Q Consensus 202 i~~ii~~~~c~gf~~ 216 (221)
+-|++-+.+||+|.+
T Consensus 51 ~G~~lgwli~g~fy~ 65 (97)
T COG3771 51 AGFALGWLICGLFYL 65 (97)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556678888755
No 225
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=21.87 E-value=1.8e+02 Score=18.02 Aligned_cols=19 Identities=0% Similarity=-0.081 Sum_probs=7.4
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 038691 185 CWGNCKLASGLVCVILIII 203 (221)
Q Consensus 185 ~w~~~k~~~ii~~vv~~i~ 203 (221)
+|+.++=-+++++++++++
T Consensus 40 ~l~~~~~p~~~iL~~~a~i 58 (64)
T smart00831 40 FLRQFHNPLIYILLAAAVL 58 (64)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 3344433333334333333
No 226
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.77 E-value=1.4e+02 Score=22.82 Aligned_cols=19 Identities=5% Similarity=0.092 Sum_probs=8.4
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 038691 185 CWGNCKLASGLVCVILIII 203 (221)
Q Consensus 185 ~w~~~k~~~ii~~vv~~i~ 203 (221)
|+.-+++.+++++++++++
T Consensus 14 ~~~~~~~~~i~~ll~~l~~ 32 (149)
T PF11694_consen 14 QNDYLRYILIIILLLVLIF 32 (149)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333455445444444433
No 227
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.73 E-value=2.5e+02 Score=18.59 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFK 174 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~ 174 (221)
|.+.-++-++++.++.=..--..+-+-.+..+.|+...++|+..-...+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777776664322112222333444555555555554444433
No 228
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=21.70 E-value=7.7e+02 Score=24.15 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 038691 202 IIYVTLAF 209 (221)
Q Consensus 202 i~~ii~~~ 209 (221)
+++++|++
T Consensus 344 ~~~~~~~~ 351 (914)
T PRK11466 344 LILILWRV 351 (914)
T ss_pred HHHHHHHH
Confidence 33344433
No 229
>TIGR03517 GldM_gliding gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Probab=21.68 E-value=5e+02 Score=24.30 Aligned_cols=58 Identities=5% Similarity=0.150 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHH-HHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHH
Q 038691 127 RLNRLKGEMSHVRSVMIDNIE-KIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSV 184 (221)
Q Consensus 127 kl~~~~~~v~~v~~im~~ni~-~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 184 (221)
+|.......++-.+...++++ ++=+++++--...++++.++..|..|..-..+||..+
T Consensus 42 sl~~s~~~~~~~N~~~~~~l~~k~~~~p~k~~~~~~~A~~vk~~S~~l~~yl~~LK~~i 100 (523)
T TIGR03517 42 SLEAAVGNSEKYNNALLAELDKAVAKAPAKDKQWQESAQKVRTKSDSLYDYMNDLKEEI 100 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443 4445666666777777777777777777666666544
No 230
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=21.60 E-value=2e+02 Score=23.79 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=7.0
Q ss_pred HHHHHHHHHhc
Q 038691 201 IIIYVTLAFYC 211 (221)
Q Consensus 201 ~i~~ii~~~~c 211 (221)
+++|+|+++++
T Consensus 169 lilF~i~~~~~ 179 (232)
T TIGR00869 169 LILFVLTLIVV 179 (232)
T ss_pred HHHHHHHHHHh
Confidence 35666667666
No 231
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=21.59 E-value=6.8e+02 Score=23.52 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 038691 127 RLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNC 189 (221)
Q Consensus 127 kl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~ 189 (221)
..+.++..++++.+-+.+==++..+=.+.|-.|...--.-...+.+++++-..++|.|--+|.
T Consensus 376 ~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nL 438 (570)
T COG4477 376 AYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNL 438 (570)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344455555555555444334444555556666655555568888888888888888877665
No 232
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=21.54 E-value=33 Score=26.07 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHhhHHHhhhHHHHHHHHHHHHHHHHH
Q 038691 158 LLVDKTATLHRNTVRFKRQARRYKSSVCW 186 (221)
Q Consensus 158 ~L~~ks~~L~~~s~~f~~~a~~l~r~~~w 186 (221)
.+.+....+...-..++......++++||
T Consensus 130 ~i~~~q~~~~~r~~~~~~~~es~~~~i~~ 158 (183)
T PF01105_consen 130 EIKDEQKYLREREERHRQLNESTNSRIMW 158 (183)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheEEh
Confidence 34444455555555666666666666653
No 233
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=21.50 E-value=1.4e+02 Score=16.12 Aligned_cols=6 Identities=17% Similarity=-0.269 Sum_probs=2.1
Q ss_pred hHHHHH
Q 038691 190 KLASGL 195 (221)
Q Consensus 190 k~~~ii 195 (221)
+..+++
T Consensus 11 r~~l~~ 16 (30)
T PF08525_consen 11 RRALIA 16 (30)
T ss_pred HHHHHH
Confidence 333333
No 234
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=21.41 E-value=1.4e+02 Score=19.72 Aligned_cols=12 Identities=17% Similarity=0.684 Sum_probs=6.9
Q ss_pred HHHHHHHHhHHH
Q 038691 137 HVRSVMIDNIEK 148 (221)
Q Consensus 137 ~v~~im~~ni~~ 148 (221)
+++++|.+|++.
T Consensus 10 ~L~~ii~~~~~~ 21 (76)
T PF04155_consen 10 ELRKIILKNMKE 21 (76)
T ss_pred HHHHHHHHHhcc
Confidence 455566666644
No 235
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.40 E-value=2.7e+02 Score=18.79 Aligned_cols=9 Identities=11% Similarity=0.350 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 038691 129 NRLKGEMSH 137 (221)
Q Consensus 129 ~~~~~~v~~ 137 (221)
..+++++++
T Consensus 36 ~~l~~~~~~ 44 (90)
T PF06103_consen 36 DTLQEQVDP 44 (90)
T ss_pred HHHHHhHHH
Confidence 334444443
No 236
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=21.35 E-value=4.4e+02 Score=22.51 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHH
Q 038691 128 LNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATL 166 (221)
Q Consensus 128 l~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L 166 (221)
+.+..++..+-..-+.+++..+-+-.++++.|...+.+|
T Consensus 22 l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L 60 (304)
T PF02646_consen 22 LEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNL 60 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444443
No 237
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=21.16 E-value=3.5e+02 Score=19.94 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhhhh
Q 038691 174 KRQARRYKSSVCWGNCK 190 (221)
Q Consensus 174 ~~~a~~l~r~~~w~~~k 190 (221)
.++-+.++|++++=+.-
T Consensus 49 ~~el~~L~rR~~li~~a 65 (130)
T PF11026_consen 49 RRELRILRRRARLIRRA 65 (130)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555444443
No 238
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=21.16 E-value=93 Score=31.57 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 038691 194 GLVCVILIIIYVTLAFYCRDP 214 (221)
Q Consensus 194 ii~~vv~~i~~ii~~~~c~gf 214 (221)
+++++++++++++++|-||.|
T Consensus 985 vl~GLLlL~llv~~LwK~GFF 1005 (1030)
T KOG3637|consen 985 VLGGLLLLALLVLLLWKCGFF 1005 (1030)
T ss_pred HHHHHHHHHHHHHHHHhcCcc
Confidence 334444455667788899766
No 239
>PF13228 DUF4037: Domain of unknown function (DUF4037)
Probab=20.93 E-value=3.1e+02 Score=19.27 Aligned_cols=55 Identities=24% Similarity=0.359 Sum_probs=37.0
Q ss_pred hhhHHHHHHhhhhCCCcccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHH
Q 038691 107 EFSRILSKQMDHYSNDPNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTAT 165 (221)
Q Consensus 107 ~f~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~ 165 (221)
.|. .+++.+..| |..=...++..+...+.+...-|+.+.++|||-+..-.-.++-
T Consensus 24 ~~~-~~R~~l~~Y---P~dl~~~~ia~~~~~~~qa~~~n~~ra~~R~D~~~~~~~~~~f 78 (100)
T PF13228_consen 24 EFT-ALRERLAYY---PEDLRLNKIARNLMLLAQAGQYNLGRALKRGDILAANHAISEF 78 (100)
T ss_pred hHH-HHHHHHHHC---hHHHHHHHHHHHHHHhhhhhHHHHHHHHHCCCHHHHHHHHHHH
Confidence 454 344444666 5554556677777777666677999999999988865555443
No 240
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=20.92 E-value=3.8e+02 Score=20.37 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=33.8
Q ss_pred EcCCCCcchHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHhhhhCCCcccchHH-HHHHHHHHHHHHHHH
Q 038691 68 ADDSFGWRIPFAFLEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHYSNDPNADRLN-RLKGEMSHVRSVMID 144 (221)
Q Consensus 68 ~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~-~~~~~v~~v~~im~~ 144 (221)
.+++.|.=+-...-+.+.++=.... ..+...|...+.....+|.++.. +|-. -++..+...|+-|..
T Consensus 20 l~rDDPILilqTiNerLlees~kAQ---------q~mL~~FkeelE~iasrW~~dak-~KAEkiLnaaLaaSKeam~~ 87 (144)
T PRK13895 20 VGRDDPILILQTINDRLMQDSAKAQ---------QEMLDQFKEELESIASRWGDDAK-EKAERILNAALAASKEAMAK 87 (144)
T ss_pred cCCCCCchhHHHHHHHHHHhhHHHH---------HHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhhHHHHHH
Confidence 3455665555555555444322110 12346888899999999944322 2222 233444444444433
No 241
>PLN00064 photosystem II protein Psb27; Provisional
Probab=20.85 E-value=4.1e+02 Score=20.68 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=41.0
Q ss_pred cchHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHhhhhCCCccc----chHH-HHHHHHHHHHHHHHHhHHH
Q 038691 74 WRIPFAFLEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHYSNDPNA----DRLN-RLKGEMSHVRSVMIDNIEK 148 (221)
Q Consensus 74 ~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~----dkl~-~~~~~v~~v~~im~~ni~~ 148 (221)
+..+-.=+.+....|...|.....-....++ ..+...|..+--+|++-+.+ +|+. .+.+|+++ .++
T Consensus 90 ~a~a~aeaR~~iNdyvSrYRr~~~v~Gl~SF-ttMyTALNaLAGHY~SfgpnrPlPeKlK~RL~qE~~~--------AEk 160 (166)
T PLN00064 90 VADAVAELRETSNSWVAKYRREKALLGRPSF-RDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDT--------AEK 160 (166)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCcccH-HHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHH--------HHH
Confidence 3445566666777788888754432222233 46677899999999544222 3332 45555544 455
Q ss_pred HHHhh
Q 038691 149 IVERG 153 (221)
Q Consensus 149 ~l~Rg 153 (221)
.+.||
T Consensus 161 al~RG 165 (166)
T PLN00064 161 ALLRG 165 (166)
T ss_pred HHHcc
Confidence 56665
No 242
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=20.84 E-value=2.9e+02 Score=23.51 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=34.2
Q ss_pred HHHHhhhhCCCcccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHH---hhhHHHHHHHHHHHHHHHHHhh
Q 038691 112 LSKQMDHYSNDPNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATL---HRNTVRFKRQARRYKSSVCWGN 188 (221)
Q Consensus 112 l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L---~~~s~~f~~~a~~l~r~~~w~~ 188 (221)
++-+++-+.-.|.+ -+++++||+..+..+- +..+.+++.-..- ..+...+++.....-...||+.
T Consensus 145 lkmL~eg~~~~~~~-----~~eE~eEVe~el~~~~-------~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifika 212 (294)
T KOG2881|consen 145 LKMLKEGWEMSPSE-----GQEELEEVEAELAKRE-------DELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKA 212 (294)
T ss_pred HHHHHHhhcCCCcc-----chhhHHHHHHHHHhcc-------chhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHH
Confidence 55566655222221 2788888877765532 2222222211111 1122456665665555667776
Q ss_pred hhHHH
Q 038691 189 CKLAS 193 (221)
Q Consensus 189 ~k~~~ 193 (221)
+-+.+
T Consensus 213 FsltF 217 (294)
T KOG2881|consen 213 FSLTF 217 (294)
T ss_pred HHHHH
Confidence 65544
No 243
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=20.76 E-value=93 Score=28.74 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=11.6
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMID 144 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ 144 (221)
++++ +-.++..+.+-+.+
T Consensus 432 ~PlD-IS~eL~~vn~sL~~ 449 (490)
T PF00523_consen 432 DPLD-ISSELGQVNNSLNN 449 (490)
T ss_dssp SHHH-HHHHHHHHHHHHHH
T ss_pred Cccc-hhhHHHHHHHHHHH
Confidence 6766 77777766665433
No 244
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.75 E-value=3.8e+02 Score=20.20 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=41.9
Q ss_pred HHHHHhhCCCC-CCCCeeEEEeCCeEEEEEE-eCCEEEEEEEcCCCCcchHHHHHHHHHHH
Q 038691 29 ARQVIDKLPQG-ISDRILSYSHDHYIFHVKR-TDNLTVLCMADDSFGWRIPFAFLEDIHQR 87 (221)
Q Consensus 29 a~~il~~i~~~-~~~~k~~~~~~~~~~~~l~-~~~~~~~~i~d~~~~~~~af~fL~~i~~~ 87 (221)
.+.+..|+.|+ -.++..+++-+.|..||.. ..|+=++..||+.... .-+.|+.|.+.
T Consensus 45 lkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptglk~vl~Tdpk~~~--ir~vLq~IYs~ 103 (140)
T KOG3368|consen 45 LKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGLKFVLNTDPKAGS--IRDVLQYIYSH 103 (140)
T ss_pred HHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCcEEEEecCCCccc--HHHHHHHHHHH
Confidence 46777788873 2356677788999999876 6899999999998764 23556666663
No 245
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.66 E-value=89 Score=21.35 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=14.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHH
Q 038691 181 KSSVCWGNCKLASGLVCVILIIIY 204 (221)
Q Consensus 181 ~r~~~w~~~k~~~ii~~vv~~i~~ 204 (221)
++|...||..+|+-++..+++++.
T Consensus 3 NwKvR~kN~~~w~ali~~i~l~vq 26 (84)
T PF04531_consen 3 NWKVRFKNKAFWVALISAILLLVQ 26 (84)
T ss_pred chhhcccCHHHHHHHHHHHHHHHH
Confidence 455666777777666655554443
No 246
>PRK05529 cell division protein FtsQ; Provisional
Probab=20.63 E-value=86 Score=26.11 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhhhHHHHHH
Q 038691 177 ARRYKSSVCWGNCKLASGLV 196 (221)
Q Consensus 177 a~~l~r~~~w~~~k~~~ii~ 196 (221)
.++..|+.-||...|...++
T Consensus 24 ~~~~~~~~~~r~~~~~~~~~ 43 (255)
T PRK05529 24 VRRFTTRIRRRFILLACAVG 43 (255)
T ss_pred hhchhhhccchhhhHHHHHH
Confidence 33444444455444443333
No 247
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=20.45 E-value=1.1e+02 Score=21.29 Aligned_cols=25 Identities=12% Similarity=0.395 Sum_probs=12.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 038691 182 SSVCWGNCKLASGLVCVILIIIYVTLA 208 (221)
Q Consensus 182 r~~~w~~~k~~~ii~~vv~~i~~ii~~ 208 (221)
.|.=|..+...+++++ ++++++||+
T Consensus 56 gK~~W~~fg~~~vVGv--vLlv~viwL 80 (87)
T PF11190_consen 56 GKKTWGDFGATVVVGV--VLLVFVIWL 80 (87)
T ss_pred CcccHHHhhhHHHHHH--HHHHHHHHH
Confidence 3444666665544444 444555654
No 248
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=20.44 E-value=97 Score=17.68 Aligned_cols=16 Identities=13% Similarity=0.447 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 038691 194 GLVCVILIIIYVTLAF 209 (221)
Q Consensus 194 ii~~vv~~i~~ii~~~ 209 (221)
++++.++.++-+|+++
T Consensus 23 ligclvvmfigiivmi 38 (41)
T PF13121_consen 23 LIGCLVVMFIGIIVMI 38 (41)
T ss_pred HHHHHHHHHHHHHheE
Confidence 4555555555555543
No 249
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=20.43 E-value=4.3e+02 Score=20.81 Aligned_cols=106 Identities=10% Similarity=0.182 Sum_probs=53.2
Q ss_pred EEEEEcCCCCcchHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHhhhhCCCcccchHHHHHHHHHHHHHHHH
Q 038691 64 VLCMADDSFGWRIPFAFLEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHYSNDPNADRLNRLKGEMSHVRSVMI 143 (221)
Q Consensus 64 ~~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~ 143 (221)
|.|.+-+- .....-.|++.+..++.+...+....... .-.-.|....+-.++-- +++. + .+-+.++-.+|.
T Consensus 66 F~~L~~~l-~~efl~~~~~~L~~~~~~~L~~p~~~d~~-~W~LAl~~a~~~~Iql~-e~~~--~----~~~vk~L~~~mv 136 (174)
T PF04510_consen 66 FICLPMPL-YGEFLIPFMENLLPEISKVLLPPEEVDVE-DWVLALTGAVCMAIQLL-ESSM--R----VDLVKELLPKMV 136 (174)
T ss_pred HHhCCchh-hhhHHHHHHHHHHHHHHHHcCCchhccHH-HHHHHHHHHHHHHHHHh-cccc--H----HHHHHHHHHHHH
Confidence 55555333 23344567777777776655432110000 00012233333333333 2221 1 233445555799
Q ss_pred HhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhh
Q 038691 144 DNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGN 188 (221)
Q Consensus 144 ~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~ 188 (221)
+.+.++++||...+-+..- |+.=.+-+++.++|=+
T Consensus 137 ~Sv~elV~~g~E~~~l~rg----------l~~~e~~v~~~~~~y~ 171 (174)
T PF04510_consen 137 KSVKELVERGMEVGFLRRG----------LRDFESFVSRQMNWYK 171 (174)
T ss_pred HHHHHHHHcccHHHHHHHH----------HHHHHHHHHHHHHHhh
Confidence 9999999999776655543 3333455666666643
No 250
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.42 E-value=4.6e+02 Score=21.13 Aligned_cols=7 Identities=14% Similarity=-0.662 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 038691 192 ASGLVCV 198 (221)
Q Consensus 192 ~~ii~~v 198 (221)
++..++|
T Consensus 174 f~~Gg~v 180 (206)
T PRK10884 174 FMYGGGV 180 (206)
T ss_pred HHHchHH
Confidence 3333333
No 251
>COG4640 Predicted membrane protein [Function unknown]
Probab=20.37 E-value=1e+02 Score=27.66 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 038691 190 KLASGLVCVILIIIYVTLAFYC 211 (221)
Q Consensus 190 k~~~ii~~vv~~i~~ii~~~~c 211 (221)
|.++.++.+.+++|++|+++..
T Consensus 50 K~ii~was~a~~lIlii~~~~f 71 (465)
T COG4640 50 KKIIPWASGAFILILIIILFFF 71 (465)
T ss_pred ceeehhHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555
No 252
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=20.34 E-value=91 Score=25.38 Aligned_cols=48 Identities=8% Similarity=0.065 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhCCCC--CCCCeeEEEeCCeEEEEEEeCCEE--EEEEEcCCCC
Q 038691 25 GNAIARQVIDKLPQG--ISDRILSYSHDHYIFHVKRTDNLT--VLCMADDSFG 73 (221)
Q Consensus 25 ~~~~a~~il~~i~~~--~~~~k~~~~~~~~~~~~l~~~~~~--~~~i~d~~~~ 73 (221)
+.....+.|+++... ..+..+-+..|... +.+..=.+. =+|.++.+..
T Consensus 11 Y~~f~~ryL~kL~~~s~~~n~~C~I~IG~I~-g~~k~C~v~V~N~C~sna~~s 62 (215)
T PHA02947 11 YNLFIERYLQNLSLYSVPTNTTCGIHIGEIK-GQFKRCKLRIINKCLNNKRLS 62 (215)
T ss_pred HHHHHHHHHHHHHhccCcccccccEEEeeee-eecCCceEEEEEhhcCCHHHH
Confidence 456677777777541 13555555666544 322211222 3555555444
No 253
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.31 E-value=3.3e+02 Score=19.32 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHH
Q 038691 131 LKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRF 173 (221)
Q Consensus 131 ~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f 173 (221)
++..++++...+.++++.+ .+.++.|..+-+.|...-...
T Consensus 61 v~~~~~e~~~~l~~r~e~i---e~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL---ELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred heecHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666665665555 444555555555554444333
No 254
>PF11146 DUF2905: Protein of unknown function (DUF2905); InterPro: IPR021320 This is a family of bacterial proteins conserved of unknown function.
Probab=20.30 E-value=1.7e+02 Score=18.96 Aligned_cols=26 Identities=19% Similarity=0.080 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 038691 190 KLASGLVCVILIIIYVTLAFYCRDPLWR 217 (221)
Q Consensus 190 k~~~ii~~vv~~i~~ii~~~~c~gf~~~ 217 (221)
|+.+.+++ +++++-+++.+. +.++|.
T Consensus 3 k~li~~gl-~l~v~G~l~~~~-~k~~lG 28 (64)
T PF11146_consen 3 KWLIVIGL-ILIVLGLLLPWL-GKFGLG 28 (64)
T ss_pred HHHHHHHH-HHHHHHHHHHHH-hhCCCC
Confidence 33334433 334444444444 455553
No 255
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=20.26 E-value=34 Score=29.25 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 038691 192 ASGLVCVILIIIYVTLAFYC 211 (221)
Q Consensus 192 ~~ii~~vv~~i~~ii~~~~c 211 (221)
.+|+++||++++++..+++|
T Consensus 148 T~IpaVVI~~iLLIA~iIa~ 167 (290)
T PF05454_consen 148 TFIPAVVIAAILLIAGIIAC 167 (290)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333
No 256
>PF13974 YebO: YebO-like protein
Probab=20.06 E-value=67 Score=21.89 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 038691 200 LIIIYVTLAF 209 (221)
Q Consensus 200 ~~i~~ii~~~ 209 (221)
+++.+++|.+
T Consensus 8 ~lv~livWFF 17 (80)
T PF13974_consen 8 LLVGLIVWFF 17 (80)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 257
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=20.06 E-value=63 Score=28.14 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 038691 173 FKRQARRYKSSVCW 186 (221)
Q Consensus 173 f~~~a~~l~r~~~w 186 (221)
|.+..++.++.-|.
T Consensus 100 ~~~~~~~~~~~~~~ 113 (331)
T PRK10856 100 FSLGKRRKKRDGWL 113 (331)
T ss_pred ccccccccccCCch
Confidence 44444444444443
Done!