Query 038691
Match_columns 221
No_of_seqs 144 out of 987
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 23:51:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 1.5E-59 5.3E-64 374.0 4.5 188 1-190 2-189 (189)
2 2nut_C Vesicle-trafficking pro 100.0 1.1E-49 3.9E-54 319.3 12.4 185 1-188 2-196 (196)
3 3kyq_A YKT6, synaptobrevin hom 100.0 3.6E-38 1.2E-42 252.0 6.8 175 1-182 2-194 (199)
4 4afi_A AP-3 complex subunit de 100.0 4E-34 1.4E-38 223.4 14.6 119 1-121 54-172 (173)
5 3hd7_A Vesicle-associated memb 100.0 1E-31 3.5E-36 188.4 12.3 88 124-211 3-90 (91)
6 2vx8_A Nucleoporin-like protei 100.0 6.8E-30 2.3E-34 198.9 13.1 120 1-122 44-163 (169)
7 2kog_A Vesicle-associated memb 100.0 7E-31 2.4E-35 192.4 4.5 91 121-211 28-118 (119)
8 3bw6_A Synaptobrevin homolog Y 99.9 3.3E-24 1.1E-28 163.1 13.7 121 1-127 5-144 (144)
9 2nps_A VAMP-4, vesicle-associa 99.9 4.5E-25 1.6E-29 148.8 6.8 71 122-192 4-74 (74)
10 1sfc_A VAMP 2, protein (synapt 99.9 2.1E-24 7E-29 152.3 9.2 72 121-192 25-96 (96)
11 1l4a_A Synaptobrevin; snare, s 99.9 9.2E-25 3.2E-29 149.4 5.0 71 121-191 10-80 (80)
12 1n7s_A Vesicle-associated memb 99.9 1.6E-21 5.4E-26 127.5 8.3 63 123-185 1-63 (63)
13 3b5n_A Synaptobrevin homolog 1 99.8 4.1E-21 1.4E-25 124.6 8.2 60 126-185 2-61 (61)
14 1gl2_A Endobrevin; membrane pr 99.8 3.5E-19 1.2E-23 116.9 6.6 60 123-182 6-65 (65)
15 1urq_A M-tomosyn isoform; tran 99.7 1.1E-16 3.6E-21 103.7 7.1 59 126-184 4-62 (63)
16 3fie_C Fragment of vesicle-ass 98.2 1.8E-09 6.3E-14 62.4 -8.7 32 123-154 6-37 (38)
17 3zym_A Phosphatidylinositol-bi 98.2 1.1E-06 3.7E-11 74.4 3.9 52 105-156 244-310 (310)
18 2fh5_A Signal recognition part 97.6 0.00028 9.7E-09 54.8 9.1 88 4-95 13-106 (185)
19 3hd7_B Syntaxin-1A; membrane p 97.5 0.0026 8.8E-08 45.2 12.2 42 126-167 21-62 (109)
20 3hd7_A Vesicle-associated memb 96.3 0.077 2.6E-06 36.2 10.7 60 126-185 12-71 (91)
21 2fz0_A R-snare NYV1P, V-snare 94.4 0.083 2.9E-06 38.4 5.7 57 30-86 52-114 (149)
22 2j3t_C Trafficking protein par 94.1 1.3 4.3E-05 32.7 11.9 117 1-119 1-137 (145)
23 2j3w_A Sedlin, trafficking pro 93.1 1.9 6.4E-05 31.6 12.1 75 44-119 64-139 (142)
24 2kog_A Vesicle-associated memb 92.6 0.039 1.3E-06 39.7 1.3 60 126-185 40-99 (119)
25 2vgl_S AP-2 complex subunit si 90.3 4 0.00014 29.6 10.9 50 44-93 47-96 (142)
26 3tjz_C Coatomer subunit zeta-1 89.0 5.1 0.00017 29.7 10.2 87 3-92 13-105 (153)
27 2j3t_D Trafficking protein par 88.0 6.9 0.00024 30.9 10.7 90 30-121 119-211 (219)
28 1w63_Q Adapter-related protein 87.6 7 0.00024 29.0 11.8 49 45-93 48-96 (158)
29 3hd7_B Syntaxin-1A; membrane p 87.1 5.9 0.0002 27.5 11.1 8 80-87 12-19 (109)
30 2ww9_B Protein transport prote 84.2 0.62 2.1E-05 30.8 2.4 50 159-208 21-70 (80)
31 1rh5_B Preprotein translocase 84.0 0.5 1.7E-05 30.8 1.9 54 155-208 4-57 (74)
32 1w63_M Adaptor-related protein 83.6 10 0.00034 32.8 10.6 91 1-93 1-96 (423)
33 2nps_B Syntaxin 13, vesicle-as 81.6 6.5 0.00022 25.0 6.6 42 126-167 6-47 (71)
34 2wwb_B SEC61gamma, protein tra 81.6 0.33 1.1E-05 31.2 0.3 54 155-208 3-56 (68)
35 3cue_A Transport protein parti 81.3 11 0.00037 29.7 8.9 78 42-119 117-218 (219)
36 3cue_C Transport protein parti 80.5 8.3 0.00029 28.7 7.8 89 29-119 51-156 (159)
37 1jth_B Syntaxin 1A; coiled-coi 80.1 9.6 0.00033 24.6 7.5 42 126-167 10-51 (77)
38 2vgl_M AP-2 complex subunit MU 79.7 27 0.00091 30.2 12.0 49 45-93 46-94 (435)
39 1sfc_A VAMP 2, protein (synapt 79.3 8.2 0.00028 26.2 6.8 59 126-184 37-95 (96)
40 1urq_A M-tomosyn isoform; tran 70.1 17 0.00058 22.6 7.1 51 126-176 11-61 (63)
41 3mp7_B Preprotein translocase 69.6 1.6 5.6E-05 27.2 1.1 51 158-208 3-53 (61)
42 1t3j_A Mitofusin 1; coiled coi 69.1 23 0.00079 24.0 6.9 45 126-170 36-80 (96)
43 2k1a_A Integrin alpha-IIB; sin 67.2 10 0.00034 21.7 4.0 14 201-214 24-37 (42)
44 2nps_A VAMP-4, vesicle-associa 64.7 23 0.00079 22.6 6.0 58 126-183 15-72 (74)
45 2knc_A Integrin alpha-IIB; tra 61.9 6.1 0.00021 24.0 2.5 14 201-214 26-39 (54)
46 2l8s_A Integrin alpha-1; trans 61.3 6.4 0.00022 23.8 2.6 14 201-214 23-36 (54)
47 1n7s_A Vesicle-associated memb 58.8 29 0.00098 21.3 8.0 49 135-183 6-54 (63)
48 3b5n_B Protein SSO1; snare com 55.6 35 0.0012 21.3 8.2 43 126-168 10-52 (69)
49 3b5n_A Synaptobrevin homolog 1 53.9 35 0.0012 20.8 8.0 45 130-174 13-57 (61)
50 2h8b_B Insulin-like 3; insulin 52.9 9.3 0.00032 20.3 2.0 13 206-218 17-29 (31)
51 3h3g_B Parathyroid hormone-rel 51.2 9.6 0.00033 18.9 1.8 13 177-189 4-16 (24)
52 1spf_A Pulmonary surfactant-as 48.3 29 0.00099 18.5 3.5 22 188-209 9-30 (35)
53 3fym_A Putative uncharacterize 44.9 4.6 0.00016 28.8 0.0 24 185-208 101-124 (130)
54 2ygg_A Sodium/hydrogen exchang 44.2 25 0.00085 22.4 3.4 23 132-154 6-28 (70)
55 1dn1_B Syntaxin 1A, syntaxin b 43.5 17 0.0006 29.2 3.3 42 126-167 200-241 (267)
56 1l4a_A Synaptobrevin; snare, s 42.8 27 0.00093 22.6 3.6 53 126-178 22-74 (80)
57 1pi7_A VPU protein, U ORF prot 42.7 26 0.0009 19.2 2.9 15 193-207 7-21 (36)
58 1gl2_B Syntaxin 7; membrane pr 41.2 61 0.0021 19.9 7.5 44 126-169 9-52 (65)
59 1ccd_A Clara cell 17 KD protei 40.7 29 0.00098 22.4 3.4 42 111-152 22-64 (77)
60 2ww9_B Protein transport prote 39.7 53 0.0018 21.4 4.6 28 153-180 8-35 (80)
61 1txp_A HnRNP C, heterogeneous 39.2 25 0.00087 18.0 2.3 24 130-157 3-26 (28)
62 1n7s_B Syntaxin 1A; neuronal s 38.9 68 0.0023 19.8 7.6 43 126-168 12-54 (68)
63 2jp3_A FXYD domain-containing 38.3 39 0.0013 21.2 3.5 17 186-202 14-30 (67)
64 1l4a_C S-SNAP25 fusion protein 37.9 84 0.0029 20.5 5.6 44 126-169 27-70 (83)
65 3bo0_B Preprotein translocase 37.4 62 0.0021 19.8 4.6 17 173-189 9-25 (65)
66 3vmt_A Monofunctional glycosyl 36.6 20 0.00069 29.0 2.6 33 179-211 26-59 (263)
67 2zxe_G FXYD10, phospholemman-l 35.8 40 0.0014 21.6 3.4 17 186-202 16-32 (74)
68 1utg_A Uteroglobin; steroid bi 35.8 26 0.00088 22.2 2.5 41 112-152 21-62 (70)
69 1sfc_B Protein (syntaxin 1A), 33.0 98 0.0034 19.9 8.1 42 126-167 21-62 (83)
70 2jwa_A Receptor tyrosine-prote 32.9 33 0.0011 19.7 2.4 15 192-206 12-26 (44)
71 2y6x_A PSB27, photosystem II 1 32.5 1.2E+02 0.0041 21.1 5.7 69 77-154 39-111 (113)
72 2kmf_A Photosystem II 11 kDa p 32.4 83 0.0028 22.0 4.9 62 76-138 42-107 (115)
73 2fhw_B Relaxin 3 (prorelaxin H 32.4 20 0.00069 18.4 1.3 11 206-216 17-27 (27)
74 2cly_A ATP synthase B chain, m 32.3 1.8E+02 0.006 22.6 7.9 37 130-166 88-124 (214)
75 1iij_A ERBB-2 receptor protein 31.2 53 0.0018 17.8 2.9 18 191-208 7-24 (35)
76 3lcn_C MRNA transport factor G 31.2 57 0.002 16.6 3.0 21 125-145 5-25 (29)
77 2jo1_A Phospholemman; FXYD1, N 30.5 57 0.0019 20.7 3.4 17 186-202 13-29 (72)
78 1fjk_A Cardiac phospholamban; 29.4 81 0.0028 18.1 3.6 16 193-208 35-50 (52)
79 4a4y_A Protein MXIG; protein b 28.7 82 0.0028 21.5 4.2 42 3-58 86-127 (146)
80 3t97_C Nuclear pore glycoprote 28.1 71 0.0024 19.8 3.6 26 148-173 6-31 (64)
81 2klu_A T-cell surface glycopro 27.1 32 0.0011 21.6 1.8 23 189-211 8-30 (70)
82 2kfe_A Meucin-24; alpha-helix, 26.9 46 0.0016 16.8 2.0 18 127-144 6-23 (26)
83 1n7s_C SNAP-25A; neuronal snar 26.9 1.3E+02 0.0044 19.3 7.3 46 125-170 22-67 (79)
84 3n2f_G Na+/K+ ATPase gamma sub 26.8 43 0.0015 17.7 2.0 22 186-207 7-28 (31)
85 2pjw_V Vacuolar protein sortin 26.4 1.5E+02 0.005 19.8 6.8 40 126-165 33-72 (91)
86 1f5n_A Interferon-induced guan 26.0 2.3E+02 0.0078 25.5 8.0 18 106-123 434-451 (592)
87 1nhl_A Synaptosomal-associated 23.8 1.2E+02 0.0041 17.8 6.9 41 130-170 4-44 (54)
88 1gl2_A Endobrevin; membrane pr 23.8 1.3E+02 0.0045 18.3 7.0 51 133-183 9-59 (65)
89 2kbc_B INSL5_B-chain; peptide 23.7 7.6 0.00026 19.8 -1.3 12 206-217 14-25 (26)
90 3b5n_C Protein transport prote 22.2 1.5E+02 0.0052 18.5 8.1 53 129-181 15-67 (70)
91 4ftx_A Protein SLM4; EGO compl 21.2 1.9E+02 0.0066 21.3 5.2 52 42-93 93-158 (170)
92 1utr_A Uteroglobin; clara cell 21.1 40 0.0014 22.6 1.5 41 112-152 42-83 (96)
93 3c3f_A Alpha/beta peptide with 20.9 1.1E+02 0.0037 16.3 3.8 6 130-135 5-10 (34)
94 1afo_A Glycophorin A; integral 20.2 1.3E+02 0.0043 16.8 3.2 19 190-208 11-29 (40)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=1.5e-59 Score=374.04 Aligned_cols=188 Identities=36% Similarity=0.680 Sum_probs=151.5
Q ss_pred CceEEEEEEeCCeEEeeccCCCCcHHHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHH
Q 038691 1 MGILYGMVARGNVVLAEFSAAQTNGNAIARQVIDKLPQGISDRILSYSHDHYIFHVKRTDNLTVLCMADDSFGWRIPFAF 80 (221)
Q Consensus 1 M~I~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~f 80 (221)
|||+|||||||++|||||+..+|||.++|+.+|+++|+ +++|+++++|+|.|||+.++|++|+|+||.+||+++||.|
T Consensus 2 M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~--~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~f 79 (189)
T 4b93_A 2 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPS--ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSF 79 (189)
T ss_dssp CSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCS--SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred CceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCC--CCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHH
Confidence 99999999999999999999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccccccccchhhhHHHHHHhhhhCCCcccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHH
Q 038691 81 LEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHYSNDPNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLV 160 (221)
Q Consensus 81 L~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~ 160 (221)
|++|+++|...|+..+.++.|++++.+|.+.|+++|++|++.++.|++.+++++|+||++||.+||+++|+|||+||.|+
T Consensus 80 L~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L~ 159 (189)
T 4b93_A 80 LNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLI 159 (189)
T ss_dssp HHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCCE
T ss_pred HHHHHHHHHhhccccccccCCccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999998877888899989999999999999965556699999999999999999999999999999999999
Q ss_pred HhhHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 038691 161 DKTATLHRNTVRFKRQARRYKSSVCWGNCK 190 (221)
Q Consensus 161 ~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k 190 (221)
+||++|+.+|..|+++|++++|+|||+|+|
T Consensus 160 ~ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 160 DKTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp ETTCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999987
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=1.1e-49 Score=319.31 Aligned_cols=185 Identities=23% Similarity=0.422 Sum_probs=116.1
Q ss_pred CceEEEEEEeC--CeEEeeccCCC---Cc----HHHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCC
Q 038691 1 MGILYGMVARG--NVVLAEFSAAQ---TN----GNAIARQVIDKLPQGISDRILSYSHDHYIFHVKRTDNLTVLCMADDS 71 (221)
Q Consensus 1 M~I~Ya~Iar~--~~iLae~~~~~---~~----~~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~ 71 (221)
| |+|+||||+ +++||+|++.+ |+ |.++++.+++++|++ .++|++++.|+|.|||+.++|++|+||||++
T Consensus 2 M-i~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~-~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~ 79 (196)
T 2nut_C 2 M-VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQ-SPTRCTLEAGAMTFHYIIEQGVCYLVLCEAA 79 (196)
T ss_dssp C-CCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTT-SCSEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred c-eEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCC-CCCeEEEEeCCEEEEEEeCCCeEEEEEEcCC
Confidence 5 899999999 79999999843 33 889999999999974 5899999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhcccccccc-ccccccchhhhHHHHHHhhhhCCCcccchHHHHHHHHHHHHHHHHHhHHHHH
Q 038691 72 FGWRIPFAFLEDIHQRFVRTYGRSIHS-AAAYAMNDEFSRILSKQMDHYSNDPNADRLNRLKGEMSHVRSVMIDNIEKIV 150 (221)
Q Consensus 72 ~~~~~af~fL~~i~~~f~~~~~~~~~~-~~~~~~~~~f~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~~~l 150 (221)
||+++||.||++|+++|...|+..+.+ +.|+++. +|++.|+++|++|++.++.|++.+++++|+||++||.+||+++|
T Consensus 80 yp~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl 158 (196)
T 2nut_C 80 FPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFI-EFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVL 158 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTG-GGHHHHHHHHTTTSCCC-----------------CCEEEHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHhccchhccccCCCchH-HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876544 4688885 99999999999995444569999999999999999999999999
Q ss_pred HhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhh
Q 038691 151 ERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGN 188 (221)
Q Consensus 151 ~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~ 188 (221)
+|||+||.|++||++|+.+|..|+++|++++|+|||++
T Consensus 159 ~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 159 QRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp --------------------------------------
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999985
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=3.6e-38 Score=251.96 Aligned_cols=175 Identities=21% Similarity=0.391 Sum_probs=149.4
Q ss_pred CceEEEEEEeCC----eEEeeccCCC----------CcHHH-HHHHHHhhCCCCCCCCeeEEEeCCeEEE-EEEeCCEEE
Q 038691 1 MGILYGMVARGN----VVLAEFSAAQ----------TNGNA-IARQVIDKLPQGISDRILSYSHDHYIFH-VKRTDNLTV 64 (221)
Q Consensus 1 M~I~Ya~Iar~~----~iLae~~~~~----------~~~~~-~a~~il~~i~~~~~~~k~~~~~~~~~~~-~l~~~~~~~ 64 (221)
|.|++.+|.+.+ ++|+...+.+ ++|.. +++.+++++|| ++|+++++|+|.|| |+.++|++|
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~---~~r~s~~~~~y~fH~y~~~~gl~y 78 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK---GSRASVKEQEYLCHVYVRSDSLAG 78 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT---TEEEEEECSSEEEEEEECTTSEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC---CCeEEEEeCCEEEEEEEecCCEEE
Confidence 889999999853 5776666532 35655 45799999888 78999999999999 899999999
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHhhccccc-cccccccccchhhhHHHHHHhhhhCCCccc-chHHHHHHHHHHHHHHH
Q 038691 65 LCMADDSFGWRIPFAFLEDIHQRFVRTYGRS-IHSAAAYAMNDEFSRILSKQMDHYSNDPNA-DRLNRLKGEMSHVRSVM 142 (221)
Q Consensus 65 ~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~-~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~-dkl~~~~~~v~~v~~im 142 (221)
+|+||.+||+++||.||++|+++|...|+.. +.+..+ ....| +.++++|++| ++|.+ |++.+++++++||++||
T Consensus 79 l~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~--~~~~f-~~l~~~m~~Y-~dp~~~d~l~~~q~el~evk~iM 154 (199)
T 3kyq_A 79 VVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSP--ATIHY-TALDGHLSRY-QNPREADPMSKVQAELDETKIIL 154 (199)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCT--TTCCC-CTHHHHHHHT-TSGGGCCCCHHHHHHHHTCCCEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccc--ccccc-HHHHHHHHHh-CCchhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999743 322211 11246 6789999999 56655 99999999999999999
Q ss_pred HHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHH
Q 038691 143 IDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKS 182 (221)
Q Consensus 143 ~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 182 (221)
.+||+++|+|||+||.|++||++|+.+|..|+++|+++++
T Consensus 155 ~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 155 HNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp ESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999985
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=223.37 Aligned_cols=119 Identities=39% Similarity=0.714 Sum_probs=115.4
Q ss_pred CceEEEEEEeCCeEEeeccCCCCcHHHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHH
Q 038691 1 MGILYGMVARGNVVLAEFSAAQTNGNAIARQVIDKLPQGISDRILSYSHDHYIFHVKRTDNLTVLCMADDSFGWRIPFAF 80 (221)
Q Consensus 1 M~I~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~f 80 (221)
|||+|||||||++|||||+..+|||..+|+.+|+++|+ .++|++++.|+|.|||+.++|++|+|+||.+||+++||.|
T Consensus 54 M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~--~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~F 131 (173)
T 4afi_A 54 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPS--ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSF 131 (173)
T ss_dssp CCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCS--SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred ccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCC--CCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHH
Confidence 99999999999999999999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccccccccchhhhHHHHHHhhhhCC
Q 038691 81 LEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHYSN 121 (221)
Q Consensus 81 L~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~ 121 (221)
|++|+++|.+.|+..+.++.|++++.+|++.|+++|++||+
T Consensus 132 LedI~~eF~~~yg~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 132 LNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 99999999999998888889999999999999999999964
No 5
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.97 E-value=1e-31 Score=188.38 Aligned_cols=88 Identities=24% Similarity=0.466 Sum_probs=86.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 038691 124 NADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIII 203 (221)
Q Consensus 124 ~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~ 203 (221)
++|++.+++++++||+++|.+||+++++|||+||.|++||++|+.+|..|+++|++++|+|||+|+|+++++++++++++
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il 82 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 82 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 038691 204 YVTLAFYC 211 (221)
Q Consensus 204 ~ii~~~~c 211 (221)
++|++++|
T Consensus 83 ~ii~~~~~ 90 (91)
T 3hd7_A 83 IIIIVYFS 90 (91)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 99999999
No 6
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.97 E-value=6.8e-30 Score=198.87 Aligned_cols=120 Identities=38% Similarity=0.714 Sum_probs=108.6
Q ss_pred CceEEEEEEeCCeEEeeccCCCCcHHHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHH
Q 038691 1 MGILYGMVARGNVVLAEFSAAQTNGNAIARQVIDKLPQGISDRILSYSHDHYIFHVKRTDNLTVLCMADDSFGWRIPFAF 80 (221)
Q Consensus 1 M~I~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~f 80 (221)
|+|+|+||+||++|||||++.++||..+++.+++++++ .++|++++.|+|.|||+.++|++|+||||++||+++||.|
T Consensus 44 M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~--~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~f 121 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPS--ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSF 121 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCS--SCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred CceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCC--CCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHH
Confidence 99999999999999999999999999999999999999 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccccccccchhhhHHHHHHhhhhCCC
Q 038691 81 LEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHYSND 122 (221)
Q Consensus 81 L~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~ 122 (221)
|++|+++|.+.|+..+.++.|++++.+|++.|++.|++||++
T Consensus 122 LedI~~eF~~~y~~~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 122 LNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHHTTGGGTCCTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHhhhhhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 999999999999877766678988889999999999999654
No 7
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.96 E-value=7e-31 Score=192.38 Aligned_cols=91 Identities=24% Similarity=0.450 Sum_probs=87.9
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 038691 121 NDPNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVIL 200 (221)
Q Consensus 121 ~~~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~ 200 (221)
++++.|++.+++++++||+++|.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|++++++++++
T Consensus 28 ~~~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~ 107 (119)
T 2kog_A 28 NLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICA 107 (119)
T ss_dssp SSSSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 038691 201 IIIYVTLAFYC 211 (221)
Q Consensus 201 ~i~~ii~~~~c 211 (221)
+++++|++++|
T Consensus 108 iii~iIi~~~c 118 (119)
T 2kog_A 108 IILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhhhee
Confidence 99999999999
No 8
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.92 E-value=3.3e-24 Score=163.14 Aligned_cols=121 Identities=20% Similarity=0.289 Sum_probs=101.0
Q ss_pred CceEEEEEEeC----CeEEeeccCCC----------CcH-HHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEE-EeCCEEE
Q 038691 1 MGILYGMVARG----NVVLAEFSAAQ----------TNG-NAIARQVIDKLPQGISDRILSYSHDHYIFHVK-RTDNLTV 64 (221)
Q Consensus 1 M~I~Ya~Iar~----~~iLae~~~~~----------~~~-~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l-~~~~~~~ 64 (221)
|.|+|++|+|+ .++|+++++.+ ++| ..+++.+++++|+ ++|+++++|+|.|||+ .++|++|
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~---~~R~sv~~~~y~fH~~~~~~gl~~ 81 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA---GQRQSIEEGNYIGHVYARSEGICG 81 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT---TEEEEEEETTEEEEEEECTTSEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC---CceEEEEeCCEEEEEEEecCCEEE
Confidence 78999999998 58999999865 566 6789999999998 6999999999999999 7899999
Q ss_pred EEEEcCCCCcchHHHHHHHHHHHHhhccccc-cccc-cccccchhhhHHHHHHhhhhCCCccc-ch
Q 038691 65 LCMADDSFGWRIPFAFLEDIHQRFVRTYGRS-IHSA-AAYAMNDEFSRILSKQMDHYSNDPNA-DR 127 (221)
Q Consensus 65 ~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~-~~~~-~~~~~~~~f~~~l~~~~~~yn~~~~~-dk 127 (221)
+|+||.+||+++||.||++|.++|.+.|+.. +.++ .+++ ...| +.|++.|++| +||.+ |+
T Consensus 82 l~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kY-qdp~~aD~ 144 (144)
T 3bw6_A 82 VLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKY-QDPSQADA 144 (144)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHT-SCC-----
T ss_pred EEEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHh-CchhhcCC
Confidence 9999999999999999999999999999866 5543 3111 3456 7899999999 67654 53
No 9
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.91 E-value=4.5e-25 Score=148.85 Aligned_cols=71 Identities=31% Similarity=0.699 Sum_probs=62.1
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHH
Q 038691 122 DPNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLA 192 (221)
Q Consensus 122 ~~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~ 192 (221)
.|+.|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|++
T Consensus 4 ~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~~ 74 (74)
T 2nps_A 4 GPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 74 (74)
T ss_dssp --CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34569999999999999999999999999999999999999999999999999999999999999999974
No 10
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.91 E-value=2.1e-24 Score=152.32 Aligned_cols=72 Identities=26% Similarity=0.472 Sum_probs=66.8
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHH
Q 038691 121 NDPNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLA 192 (221)
Q Consensus 121 ~~~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~ 192 (221)
+++..|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|++
T Consensus 25 ~~~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 96 (96)
T 1sfc_A 25 NLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 (96)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 356679999999999999999999999999999999999999999999999999999999999999999975
No 11
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.90 E-value=9.2e-25 Score=149.44 Aligned_cols=71 Identities=25% Similarity=0.527 Sum_probs=62.7
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhH
Q 038691 121 NDPNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKL 191 (221)
Q Consensus 121 ~~~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~ 191 (221)
+.++.|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|+
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566999999999999999999999999999999999999999999999999999999999999999985
No 12
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.85 E-value=1.6e-21 Score=127.49 Aligned_cols=63 Identities=24% Similarity=0.422 Sum_probs=61.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHH
Q 038691 123 PNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVC 185 (221)
Q Consensus 123 ~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~ 185 (221)
|+.|++.+++.++++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+||
T Consensus 1 ~~~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 1 GSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 566999999999999999999999999999999999999999999999999999999999998
No 13
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.84 E-value=4.1e-21 Score=124.58 Aligned_cols=60 Identities=35% Similarity=0.553 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVC 185 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~ 185 (221)
|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+||
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999999999999999999999999999999999999
No 14
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.78 E-value=3.5e-19 Score=116.89 Aligned_cols=60 Identities=30% Similarity=0.570 Sum_probs=52.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHH
Q 038691 123 PNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKS 182 (221)
Q Consensus 123 ~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 182 (221)
|..|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|
T Consensus 6 ~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 6 AGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456999999999999999999999999999999999999999999999999999999986
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.67 E-value=1.1e-16 Score=103.65 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSV 184 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 184 (221)
.++..++.++++|+++|.+|++++++|||+|+.|++||++|..+|..|++.|++|++++
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999875
No 16
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.18 E-value=1.8e-09 Score=62.40 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=29.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 038691 123 PNADRLNRLKGEMSHVRSVMIDNIEKIVERGD 154 (221)
Q Consensus 123 ~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge 154 (221)
+..|++.+++.+++||++||.+||+++|+||+
T Consensus 6 ~~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 6 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 45599999999999999999999999999997
No 17
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.16 E-value=1.1e-06 Score=74.36 Aligned_cols=52 Identities=25% Similarity=0.513 Sum_probs=33.6
Q ss_pred chhhhHHHHHHhhhhCC---------------CcccchHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 038691 105 NDEFSRILSKQMDHYSN---------------DPNADRLNRLKGEMSHVRSVMIDNIEKIVERGDRL 156 (221)
Q Consensus 105 ~~~f~~~l~~~~~~yn~---------------~~~~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l 156 (221)
...|..+..++.+.|.. .+..|++.++|++++||++||.+||+++++|||+|
T Consensus 244 ykrf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 244 YKKFLTRMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC------------------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 45666666666666521 12238999999999999999999999999999986
No 18
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.64 E-value=0.00028 Score=54.78 Aligned_cols=88 Identities=18% Similarity=0.298 Sum_probs=62.7
Q ss_pred EEEEEEeCCeEEeeccCCCC----cHHHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEEcCCCCcchH
Q 038691 4 LYGMVARGNVVLAEFSAAQT----NGNAIARQVIDKLPQGISDRILSYSHDHYIFHVKRTD--NLTVLCMADDSFGWRIP 77 (221)
Q Consensus 4 ~Ya~Iar~~~iLae~~~~~~----~~~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~~~--~~~~~~i~d~~~~~~~a 77 (221)
..+.+.+|++||..|+.... ....+++.++-.=. ....++++|+|...+..++ +++|+++-..-.+-.-+
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER----~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Yi 88 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQER----GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYV 88 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC-----------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccc----cCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHH
Confidence 56788999999999854332 34555555554322 2234688899999988765 79999998887777778
Q ss_pred HHHHHHHHHHHhhccccc
Q 038691 78 FAFLEDIHQRFVRTYGRS 95 (221)
Q Consensus 78 f~fL~~i~~~f~~~~~~~ 95 (221)
-.||+.++..|...|+..
T Consensus 89 D~LL~~v~~~Fv~~Y~~~ 106 (185)
T 2fh5_A 89 DKLIDDVHRLFRDKYRTE 106 (185)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999999999988644
No 19
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.53 E-value=0.0026 Score=45.24 Aligned_cols=42 Identities=7% Similarity=0.216 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLH 167 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~ 167 (221)
+.+.+++..+.|+.+++.+=-..+-+.|+.+|.+++..++-.
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~ 62 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 62 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 568899999999999998877788899999998887766544
No 20
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.33 E-value=0.077 Score=36.23 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVC 185 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~ 185 (221)
+.+..++.-+.+.-+.+.++=+++=+=.++-+.|.+.|.....+|...+++...-+-|+|
T Consensus 12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~ 71 (91)
T 3hd7_A 12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 71 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666677778888999999999999877776665554
No 21
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.083 Score=38.38 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=42.9
Q ss_pred HHHHhhCCCC--CCCCeeEEE-eCCeEEEEEE---eCCEEEEEEEcCCCCcchHHHHHHHHHH
Q 038691 30 RQVIDKLPQG--ISDRILSYS-HDHYIFHVKR---TDNLTVLCMADDSFGWRIPFAFLEDIHQ 86 (221)
Q Consensus 30 ~~il~~i~~~--~~~~k~~~~-~~~~~~~~l~---~~~~~~~~i~d~~~~~~~af~fL~~i~~ 86 (221)
..++.++-|- +.-.|++.. .|||-++|.+ +++.+|+|.+..+.|+-++...|.++++
T Consensus 52 dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 52 DMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred heecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 4455566551 123344444 4899999987 3578999999999999999999999986
No 22
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=94.09 E-value=1.3 Score=32.74 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=69.3
Q ss_pred CceEEEEEEeC-CeEEeeccC--CC--C-cHHH----------HHHHHHhhCCCC-CCCCeeEEEeCCeEEE-EEEeCCE
Q 038691 1 MGILYGMVARG-NVVLAEFSA--AQ--T-NGNA----------IARQVIDKLPQG-ISDRILSYSHDHYIFH-VKRTDNL 62 (221)
Q Consensus 1 M~I~Ya~Iar~-~~iLae~~~--~~--~-~~~~----------~a~~il~~i~~~-~~~~k~~~~~~~~~~~-~l~~~~~ 62 (221)
|.+.+..|... +.+|.+..- .. + +.++ -...+.+++.|. ......+++.++|..| |.+..|+
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 67666666554 567765532 21 1 1111 234566677662 1355678888999777 5557899
Q ss_pred EEEEEEcCCCCcchHHHHHHHHH-HHHhhccc-cccccccccccchhhhHHHHHHhhhh
Q 038691 63 TVLCMADDSFGWRIPFAFLEDIH-QRFVRTYG-RSIHSAAAYAMNDEFSRILSKQMDHY 119 (221)
Q Consensus 63 ~~~~i~d~~~~~~~af~fL~~i~-~~f~~~~~-~~~~~~~~~~~~~~f~~~l~~~~~~y 119 (221)
=|+.++|+..+. .-.||.+|. +.|..-.- +.-.....+=....|+..++.+++.+
T Consensus 81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 81 KVVMNTDLGVGP--IRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137 (145)
T ss_dssp EEEEEECTTCCC--CHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTS
T ss_pred EEEEEecCCcch--HHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhC
Confidence 999999987553 568899988 55553111 11111111112367888899988876
No 23
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=93.12 E-value=1.9 Score=31.61 Aligned_cols=75 Identities=7% Similarity=0.037 Sum_probs=49.0
Q ss_pred eeEEEeCCeEEE-EEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHhhhh
Q 038691 44 ILSYSHDHYIFH-VKRTDNLTVLCMADDSFGWRIPFAFLEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHY 119 (221)
Q Consensus 44 k~~~~~~~~~~~-~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y 119 (221)
+.+...++|..| |.+..|+=|+.++|+. .....-.||++|.+.|....-+.-.....+=....|+..+++++++|
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKH 139 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHHh
Confidence 456666788766 6667899999999984 23456788999997776432211111111112357899999999887
No 24
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=92.57 E-value=0.039 Score=39.69 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSVC 185 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~ 185 (221)
+.+..++..+.+.-+.+.+.=+++=+=.++-+.|.+.|.....+|...+++...-+-++|
T Consensus 40 ~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 99 (119)
T 2kog_A 40 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888877777777766666666777778888999999999999888776666655
No 25
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=90.28 E-value=4 Score=29.63 Aligned_cols=50 Identities=6% Similarity=-0.042 Sum_probs=42.6
Q ss_pred eeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHhhccc
Q 038691 44 ILSYSHDHYIFHVKRTDNLTVLCMADDSFGWRIPFAFLEDIHQRFVRTYG 93 (221)
Q Consensus 44 k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~ 93 (221)
--.++.+++.|.|...+++.|+++++.+.+.-..+.||..+.+.+..-++
T Consensus 47 ~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 47 TNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp CSEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34567889999898889999999999999999999999998887776555
No 26
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=88.99 E-value=5.1 Score=29.67 Aligned_cols=87 Identities=9% Similarity=0.107 Sum_probs=60.6
Q ss_pred eEEEEEEe--CCeEEeeccCCC-CcH---HHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcch
Q 038691 3 ILYGMVAR--GNVVLAEFSAAQ-TNG---NAIARQVIDKLPQGISDRILSYSHDHYIFHVKRTDNLTVLCMADDSFGWRI 76 (221)
Q Consensus 3 I~Ya~Iar--~~~iLae~~~~~-~~~---~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~ 76 (221)
|....|.. |..+|+-|=... ... ....+.+..++.+ .+ .-.+..+++.+.|....++.|+++++.+...-.
T Consensus 13 I~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r--~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~ 89 (153)
T 3tjz_C 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHR--TD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELM 89 (153)
T ss_dssp EEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSS--CC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHH
T ss_pred heEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHH
Confidence 44455543 447777665532 221 2233345555444 23 346778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 038691 77 PFAFLEDIHQRFVRTY 92 (221)
Q Consensus 77 af~fL~~i~~~f~~~~ 92 (221)
.+.||..+.+.+..-|
T Consensus 90 ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 90 LMTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998887666
No 27
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=87.97 E-value=6.9 Score=30.87 Aligned_cols=90 Identities=13% Similarity=0.068 Sum_probs=58.7
Q ss_pred HHHHhhCCCC-CCCCeeEEEeCCeEEE-EEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHhhccc-cccccccccccch
Q 038691 30 RQVIDKLPQG-ISDRILSYSHDHYIFH-VKRTDNLTVLCMADDSFGWRIPFAFLEDIHQRFVRTYG-RSIHSAAAYAMND 106 (221)
Q Consensus 30 ~~il~~i~~~-~~~~k~~~~~~~~~~~-~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~-~~~~~~~~~~~~~ 106 (221)
..+.+++.|. ....-.+++.+.|..| |.+..|+-|+.++|+. ....-.||.++.+.|....- +.-.....+=...
T Consensus 119 d~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~ 196 (219)
T 2j3t_D 119 FAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCE 196 (219)
T ss_dssp HHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCH
T ss_pred HHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccchH
Confidence 4555677662 1234567788898877 5567899999999986 44567889999976654211 2111111111236
Q ss_pred hhhHHHHHHhhhhCC
Q 038691 107 EFSRILSKQMDHYSN 121 (221)
Q Consensus 107 ~f~~~l~~~~~~yn~ 121 (221)
.|+..++.+++.+++
T Consensus 197 ~Fd~~v~~l~~~~~~ 211 (219)
T 2j3t_D 197 LFDQNLKLALEVAEK 211 (219)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhc
Confidence 799999999999853
No 28
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=87.63 E-value=7 Score=28.97 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=42.4
Q ss_pred eEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHhhccc
Q 038691 45 LSYSHDHYIFHVKRTDNLTVLCMADDSFGWRIPFAFLEDIHQRFVRTYG 93 (221)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~ 93 (221)
-.++.+++.|.|...+++.|+++++.+.+.-..+.||..+.+-+..-++
T Consensus 48 ~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 48 SFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred CeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4567889999898889999999999999999999999998888776555
No 29
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=87.05 E-value=5.9 Score=27.54 Aligned_cols=8 Identities=38% Similarity=0.571 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 038691 80 FLEDIHQR 87 (221)
Q Consensus 80 fL~~i~~~ 87 (221)
-|.+++.+
T Consensus 12 ~l~~i~eR 19 (109)
T 3hd7_B 12 ALSEIETR 19 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 30
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=84.23 E-value=0.62 Score=30.83 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=34.4
Q ss_pred HHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 038691 159 LVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTLA 208 (221)
Q Consensus 159 L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~ 208 (221)
+.+...+.-.++.+|-+.+++=.|+.+++-.|...+.++++-++-|+|=+
T Consensus 21 ~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIkL 70 (80)
T 2ww9_B 21 LVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKL 70 (80)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566677777777777888888888887777777777666543
No 31
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=84.01 E-value=0.5 Score=30.84 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=34.6
Q ss_pred hhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 038691 155 RLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTLA 208 (221)
Q Consensus 155 ~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~ 208 (221)
+++.+.+...+.-.++.+|-+.+++=.|+.+++-.|...+.++++-++-|+|=+
T Consensus 4 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 4 DFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHV 57 (74)
T ss_dssp --------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666677788888888888888888888877777777666565543
No 32
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=83.57 E-value=10 Score=32.80 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=58.7
Q ss_pred CceEEEEEEeC-C-eEEeeccCC--CCc-HHHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEEcCCCCcc
Q 038691 1 MGILYGMVARG-N-VVLAEFSAA--QTN-GNAIARQVIDKLPQGISDRILSYSHDHYIFHVKRTDNLTVLCMADDSFGWR 75 (221)
Q Consensus 1 M~I~Ya~Iar~-~-~iLae~~~~--~~~-~~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~ 75 (221)
|-|....|... + .+|+-+=.. ..+ .+..-+.++.+... ...--.++.+++.|.|...+++.|+|+++.+...-
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~--~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l 78 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEE--GMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVS 78 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHT--SCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhcccc--CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHH
Confidence 44666666543 3 444433221 122 33344455543221 12224567889999998899999999999999999
Q ss_pred hHHHHHHHHHHHHhhccc
Q 038691 76 IPFAFLEDIHQRFVRTYG 93 (221)
Q Consensus 76 ~af~fL~~i~~~f~~~~~ 93 (221)
..+.||..+.+-+..-++
T Consensus 79 ~~le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 79 LVFSFLYKVVQVFSEYFK 96 (423)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999888776554
No 33
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=81.61 E-value=6.5 Score=24.99 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLH 167 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~ 167 (221)
+.+.+++..+.++.+++.+=-..+.+.|+-||.++...++-.
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 47 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSE 47 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 568899999999999998877788899999999887766554
No 34
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=81.55 E-value=0.33 Score=31.16 Aligned_cols=54 Identities=6% Similarity=0.079 Sum_probs=39.7
Q ss_pred hhHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 038691 155 RLNLLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTLA 208 (221)
Q Consensus 155 ~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~ 208 (221)
.++.+.+...+.-.++.+|-+.+++=.|+.+++-.|...+..+++-++-|+|=+
T Consensus 3 ~~~~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~Ikl 56 (68)
T 2wwb_B 3 QVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKL 56 (68)
T ss_dssp SSSSSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677778888888888888888888888877777777776666443
No 35
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=81.30 E-value=11 Score=29.74 Aligned_cols=78 Identities=10% Similarity=0.140 Sum_probs=49.0
Q ss_pred CCeeEEEeCCeEEE-EEEeCCEEEEEEEcCCCCc----------------------chHHHHHHHHHHHHhhccc-cccc
Q 038691 42 DRILSYSHDHYIFH-VKRTDNLTVLCMADDSFGW----------------------RIPFAFLEDIHQRFVRTYG-RSIH 97 (221)
Q Consensus 42 ~~k~~~~~~~~~~~-~l~~~~~~~~~i~d~~~~~----------------------~~af~fL~~i~~~f~~~~~-~~~~ 97 (221)
..-..+..+.|..| |.+..|+=|++++|+..+. ..+-.||.+|...|....- +.-.
T Consensus 117 ~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY 196 (219)
T 3cue_A 117 SGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSY 196 (219)
T ss_dssp SSCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred CceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35567777888766 5667899999999997743 4567889998877764211 1111
Q ss_pred cccccccchhhhHHHHHHhhhh
Q 038691 98 SAAAYAMNDEFSRILSKQMDHY 119 (221)
Q Consensus 98 ~~~~~~~~~~f~~~l~~~~~~y 119 (221)
...-.=....|+..++.+++.+
T Consensus 197 ~~~~pI~S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 197 SMEMPIRSNLFDEKVKKMVENL 218 (219)
T ss_dssp CTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHhc
Confidence 1000011256888888887765
No 36
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=80.46 E-value=8.3 Score=28.71 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=55.5
Q ss_pred HHHHHhhCCCC-CCCCeeEEEeCCeEEEE-EEeCCEEEEEEEcCCCCcchHHHHHHHHHH-HHhhcc-ccc-----cccc
Q 038691 29 ARQVIDKLPQG-ISDRILSYSHDHYIFHV-KRTDNLTVLCMADDSFGWRIPFAFLEDIHQ-RFVRTY-GRS-----IHSA 99 (221)
Q Consensus 29 a~~il~~i~~~-~~~~k~~~~~~~~~~~~-l~~~~~~~~~i~d~~~~~~~af~fL~~i~~-~f~~~~-~~~-----~~~~ 99 (221)
.+.+.+++.|. ..+.-..++.+.|..|+ .+..|+-|++++|+..+ -.-.+|.+|.. .|..-. .+. -...
T Consensus 51 L~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~ 128 (159)
T 3cue_C 51 LRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVKYVSNNLLSPYDFAEN 128 (159)
T ss_dssp HHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHHHHHSCTTSCCSCCCS
T ss_pred HHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 35667788773 12456677778888774 55789999999998754 34578888886 555311 111 0000
Q ss_pred c--------ccccchhhhHHHHHHhhhh
Q 038691 100 A--------AYAMNDEFSRILSKQMDHY 119 (221)
Q Consensus 100 ~--------~~~~~~~f~~~l~~~~~~y 119 (221)
. .+=....|+..++++++.+
T Consensus 129 ~~~~~~~~~~pI~s~~Fd~~l~~~~~~~ 156 (159)
T 3cue_C 129 ENEMRGQGTRKITNRNFISVLESFLAPM 156 (159)
T ss_dssp CTTTTTSCCCCCCCHHHHHHHHHHTSCC
T ss_pred ccccccccCcCcccHHHHHHHHHHHHhc
Confidence 0 0112356888888888766
No 37
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=80.09 E-value=9.6 Score=24.57 Aligned_cols=42 Identities=7% Similarity=0.216 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLH 167 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~ 167 (221)
+.+.+++..+.++.+++.+=-..+.+.|+-||.++...++-.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 51 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 51 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 568899999999999998877788899999988777665544
No 38
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=79.67 E-value=27 Score=30.18 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=42.5
Q ss_pred eEEEeCCeEEEEEEeCCEEEEEEEcCCCCcchHHHHHHHHHHHHhhccc
Q 038691 45 LSYSHDHYIFHVKRTDNLTVLCMADDSFGWRIPFAFLEDIHQRFVRTYG 93 (221)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~ 93 (221)
-.++.+++.|.|...+++.|+|+++.+...-..+.||..+.+-+..-++
T Consensus 46 ~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4667899999998899999999999999999999999998887776555
No 39
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=79.28 E-value=8.2 Score=26.23 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSSV 184 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 184 (221)
+.+..++..+.+.-+.+.+.=+++=+=.++-+.|.+.|.....+|...+++...-+-|+
T Consensus 37 ~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~ 95 (96)
T 1sfc_A 37 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKM 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556666666666666666666666666677777788888888888777665544443
No 40
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=70.12 E-value=17 Score=22.61 Aligned_cols=51 Identities=10% Similarity=0.233 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQ 176 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~ 176 (221)
..+..+...+.+..+.+.+.-+++=.=.++-+.|.+.+.+.+.+|..++++
T Consensus 11 ~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~K 61 (63)
T 1urq_A 11 GAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLK 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777777777877777777888888899999999888887654
No 41
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=69.57 E-value=1.6 Score=27.23 Aligned_cols=51 Identities=10% Similarity=0.015 Sum_probs=33.2
Q ss_pred HHHHhhHHHhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 038691 158 LLVDKTATLHRNTVRFKRQARRYKSSVCWGNCKLASGLVCVILIIIYVTLA 208 (221)
Q Consensus 158 ~L~~ks~~L~~~s~~f~~~a~~l~r~~~w~~~k~~~ii~~vv~~i~~ii~~ 208 (221)
++.+...+.-.++.++-+.+++=.|+.+.+-.|...+.++++-++-|+|=+
T Consensus 3 ~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 3 ELQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLIRI 53 (61)
T ss_dssp -----CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566677778888888888888888888877777766666555443
No 42
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=69.08 E-value=23 Score=24.03 Aligned_cols=45 Identities=13% Similarity=0.277 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNT 170 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s 170 (221)
.-...+...|+++++-|.+-|+.+-..=..||.+..++..|...|
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA 80 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKA 80 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345688999999999999988888777777776555554444333
No 43
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=67.25 E-value=10 Score=21.70 Aligned_cols=14 Identities=14% Similarity=-0.031 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCCC
Q 038691 201 IIIYVTLAFYCRDP 214 (221)
Q Consensus 201 ~i~~ii~~~~c~gf 214 (221)
+.+.+.+++-||.|
T Consensus 24 L~li~~~LwK~GFF 37 (42)
T 2k1a_A 24 LTILVLAMWKVGFF 37 (42)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCcc
Confidence 33456677889655
No 44
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=64.72 E-value=23 Score=22.58 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSS 183 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~ 183 (221)
+.+..++.-+.+.-+.+.+.=+++=.=.++-+.|...|.....+|...+++...-+-+
T Consensus 15 ~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K 72 (74)
T 2nps_A 15 NQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCK 72 (74)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555556666555555566667778888999999998887766544333
No 45
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=61.86 E-value=6.1 Score=23.96 Aligned_cols=14 Identities=14% Similarity=-0.031 Sum_probs=9.0
Q ss_pred HHHHHHHHHhcCCC
Q 038691 201 IIIYVTLAFYCRDP 214 (221)
Q Consensus 201 ~i~~ii~~~~c~gf 214 (221)
+.+.+.+++-||.|
T Consensus 26 L~li~~~LwK~GFF 39 (54)
T 2knc_A 26 LTILVLAMWKVGFF 39 (54)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcc
Confidence 33456677899655
No 46
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=61.25 E-value=6.4 Score=23.82 Aligned_cols=14 Identities=0% Similarity=-0.031 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCCC
Q 038691 201 IIIYVTLAFYCRDP 214 (221)
Q Consensus 201 ~i~~ii~~~~c~gf 214 (221)
+.+.+.+++-||.|
T Consensus 23 L~Lii~~LwK~GFF 36 (54)
T 2l8s_A 23 LMLLILALWKIGFF 36 (54)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcc
Confidence 33456677889655
No 47
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=58.78 E-value=29 Score=21.29 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHH
Q 038691 135 MSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSS 183 (221)
Q Consensus 135 v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~ 183 (221)
+..++.-+.+..+-+.++-+++-.=-++-+.|.+.|......|...++.
T Consensus 6 l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~ 54 (63)
T 1n7s_A 6 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETS 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333344444444455554444444443
No 48
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=55.60 E-value=35 Score=21.30 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHR 168 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~ 168 (221)
+.+.+++..+.++.+++.+=-..+.+.|+-||.+....+.-..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 52 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQL 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5688999999999999988777888999999998887766543
No 49
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=53.88 E-value=35 Score=20.77 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHH
Q 038691 130 RLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFK 174 (221)
Q Consensus 130 ~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~ 174 (221)
.++.-+.+.-+.+.+.=+++=.=.++-+.|...|.....+|...+
T Consensus 13 evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~ 57 (61)
T 3b5n_A 13 DTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVR 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444444555555554443
No 50
>2h8b_B Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_B 2k6u_B
Probab=52.89 E-value=9.3 Score=20.32 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=10.3
Q ss_pred HHHHhcCCCCCCc
Q 038691 206 TLAFYCRDPLWRY 218 (221)
Q Consensus 206 i~~~~c~gf~~~~ 218 (221)
.++.+|||.+|++
T Consensus 17 a~I~vCG~s~w~~ 29 (31)
T 2h8b_B 17 ALVRVCGGPRWST 29 (31)
T ss_dssp HHHHHHCTTTCSS
T ss_pred HHHHHcCCCCcCC
Confidence 4667999999964
No 51
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=51.19 E-value=9.6 Score=18.91 Aligned_cols=13 Identities=0% Similarity=-0.008 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhh
Q 038691 177 ARRYKSSVCWGNC 189 (221)
Q Consensus 177 a~~l~r~~~w~~~ 189 (221)
-+.+||+||..+.
T Consensus 4 ~Q~~rRr~wL~~l 16 (24)
T 3h3g_B 4 IQDLRRRFFLHHL 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678999998874
No 52
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=48.29 E-value=29 Score=18.47 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 038691 188 NCKLASGLVCVILIIIYVTLAF 209 (221)
Q Consensus 188 ~~k~~~ii~~vv~~i~~ii~~~ 209 (221)
+.|-.+++.+++++++.+|...
T Consensus 9 ~lKrLlivVvVvVlvVvVivGa 30 (35)
T 1spf_A 9 NLKRLLVVVVVVVLVVVVIVGA 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chheEEEEEeeehhhHHHHHHH
Confidence 3444455555555555555443
No 53
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=44.90 E-value=4.6 Score=28.82 Aligned_cols=24 Identities=4% Similarity=-0.106 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHH
Q 038691 185 CWGNCKLASGLVCVILIIIYVTLA 208 (221)
Q Consensus 185 ~w~~~k~~~ii~~vv~~i~~ii~~ 208 (221)
.++.+.+.++++++++++++++|+
T Consensus 101 ~~~~~~~~~i~~~~~i~i~~~~~~ 124 (130)
T 3fym_A 101 KSKEPIQLLVIMGITVLITLLLWI 124 (130)
T ss_dssp ------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666655555555544
No 54
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=44.21 E-value=25 Score=22.36 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhh
Q 038691 132 KGEMSHVRSVMIDNIEKIVERGD 154 (221)
Q Consensus 132 ~~~v~~v~~im~~ni~~~l~Rge 154 (221)
.++++++++|+..|+.++-+|.-
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 46899999999999999987753
No 55
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=43.53 E-value=17 Score=29.24 Aligned_cols=42 Identities=7% Similarity=0.216 Sum_probs=31.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLH 167 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~ 167 (221)
.-+.+++..+.++.+++.+=-.-+.+.|+-||.++...+.-.
T Consensus 200 ~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~ 241 (267)
T 1dn1_B 200 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 241 (267)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 346667777777777777665677799999999888776543
No 56
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=42.79 E-value=27 Score=22.63 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQAR 178 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~ 178 (221)
+.+..++..+.+.-+.+.+.=+++=+=.++-+.|.+.|.....+|...+++..
T Consensus 22 ~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~w 74 (80)
T 1l4a_A 22 AQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFW 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666677888889999999988876543
No 57
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=42.75 E-value=26 Score=19.22 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 038691 193 SGLVCVILIIIYVTL 207 (221)
Q Consensus 193 ~ii~~vv~~i~~ii~ 207 (221)
.++++++++++-+++
T Consensus 7 ~ivalivalIiaIVV 21 (36)
T 1pi7_A 7 AIVALVVAIIIAIVV 21 (36)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555544333
No 58
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=41.16 E-value=61 Score=19.89 Aligned_cols=44 Identities=14% Similarity=0.270 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRN 169 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~ 169 (221)
..+.+++..+.++.+++.+=-.-+.+.|+.||.+....+.-...
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 52 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVH 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999887777889999999988877665433
No 59
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=40.71 E-value=29 Score=22.42 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=28.6
Q ss_pred HHHHHhhhhCCCccc-chHHHHHHHHHHHHHHHHHhHHHHHHh
Q 038691 111 ILSKQMDHYSNDPNA-DRLNRLKGEMSHVRSVMIDNIEKIVER 152 (221)
Q Consensus 111 ~l~~~~~~yn~~~~~-dkl~~~~~~v~~v~~im~~ni~~~l~R 152 (221)
.-+..+++|+.+|.. +...++++=++....-=+.|+.+++++
T Consensus 22 ~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 22 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356678889666543 666777777776666666777777654
No 60
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=39.69 E-value=53 Score=21.42 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=7.5
Q ss_pred hhhhHHHHHhhHHHhhhHHHHHHHHHHH
Q 038691 153 GDRLNLLVDKTATLHRNTVRFKRQARRY 180 (221)
Q Consensus 153 ge~l~~L~~ks~~L~~~s~~f~~~a~~l 180 (221)
|++.+...++.+.+.+...+|.+.++++
T Consensus 8 ~~~~~~~~d~~~~~~e~~~~f~kd~~rv 35 (80)
T 2ww9_B 8 GEEKKQSNNQVEKLVEAPVEFVREGTQF 35 (80)
T ss_dssp -------------CCHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555555443
No 61
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=39.23 E-value=25 Score=17.96 Aligned_cols=24 Identities=13% Similarity=0.556 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhH
Q 038691 130 RLKGEMSHVRSVMIDNIEKIVERGDRLN 157 (221)
Q Consensus 130 ~~~~~v~~v~~im~~ni~~~l~Rge~l~ 157 (221)
.++.++.+++ .++|.+|+|=|+++
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 4555555433 46777777766554
No 62
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=38.94 E-value=68 Score=19.81 Aligned_cols=43 Identities=7% Similarity=0.209 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHR 168 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~ 168 (221)
+.+.+++..+.++.+++.+=-..+.+.|+.||.+....+.-..
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 54 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 54 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5688999999999999988777888999999998877765443
No 63
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=38.29 E-value=39 Score=21.24 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=8.5
Q ss_pred HhhhhHHHHHHHHHHHH
Q 038691 186 WGNCKLASGLVCVILII 202 (221)
Q Consensus 186 w~~~k~~~ii~~vv~~i 202 (221)
|...++.-+++.+|+.+
T Consensus 14 Y~tLRigGLifA~vLfi 30 (67)
T 2jp3_A 14 WESLQLGGLIFGGLLCI 30 (67)
T ss_dssp GHHHHHHHHHHHHHHHH
T ss_pred hHHheecchhhHHHHHH
Confidence 44555555555444433
No 64
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=37.88 E-value=84 Score=20.55 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRN 169 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~ 169 (221)
+.....-.-+++.+++....+..+..-||+|+......+.+...
T Consensus 27 ~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~d 70 (83)
T 1l4a_C 27 ESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQD 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677778888888999999999999999888877776544
No 65
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=37.44 E-value=62 Score=19.76 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q 038691 173 FKRQARRYKSSVCWGNC 189 (221)
Q Consensus 173 f~~~a~~l~r~~~w~~~ 189 (221)
|-++.++-=++..|..-
T Consensus 9 f~~~~~~E~kkV~wptr 25 (65)
T 3bo0_B 9 FAREARTEVRKVIWPTR 25 (65)
T ss_dssp HHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHhheeccCC
Confidence 33333333334444444
No 66
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=36.57 E-value=20 Score=28.98 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHhc
Q 038691 179 RYKSSVCWGNCKLASGLVCVILIII-YVTLAFYC 211 (221)
Q Consensus 179 ~l~r~~~w~~~k~~~ii~~vv~~i~-~ii~~~~c 211 (221)
+-.+|.|++++-.++++++++++++ +.+....+
T Consensus 26 ~~~kk~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 59 (263)
T 3vmt_A 26 KPPKKKKSKRILLKILLTILIIIALFIGIMYFLS 59 (263)
T ss_dssp ---------CCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445666666655555555554443 34443344
No 67
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=35.82 E-value=40 Score=21.57 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=8.5
Q ss_pred HhhhhHHHHHHHHHHHH
Q 038691 186 WGNCKLASGLVCVILII 202 (221)
Q Consensus 186 w~~~k~~~ii~~vv~~i 202 (221)
|...++.-+++.+|+.+
T Consensus 16 Y~tLRigGLifA~vLfi 32 (74)
T 2zxe_G 16 YYRLRVVGLIVAAVLCV 32 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHheeccchhHHHHHH
Confidence 44556555555444433
No 68
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=35.80 E-value=26 Score=22.16 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=26.2
Q ss_pred HHHHhhhhCCCccc-chHHHHHHHHHHHHHHHHHhHHHHHHh
Q 038691 112 LSKQMDHYSNDPNA-DRLNRLKGEMSHVRSVMIDNIEKIVER 152 (221)
Q Consensus 112 l~~~~~~yn~~~~~-dkl~~~~~~v~~v~~im~~ni~~~l~R 152 (221)
-+..+++|+.+|.. +...++++=++....-=+.|+.+++++
T Consensus 21 Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 21 YETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46677888665543 556666666666666666677666654
No 69
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=33.04 E-value=98 Score=19.92 Aligned_cols=42 Identities=7% Similarity=0.216 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHh
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLH 167 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~ 167 (221)
..+.+++..+.++.+++.+=-.-+.+.|+-||.++...+.-.
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 62 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 568899999999999998877778899999998887776544
No 70
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=32.87 E-value=33 Score=19.73 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 038691 192 ASGLVCVILIIIYVT 206 (221)
Q Consensus 192 ~~ii~~vv~~i~~ii 206 (221)
..+++.+|-+++++|
T Consensus 12 ~~Ia~~vVGvll~vi 26 (44)
T 2jwa_A 12 TSIISAVVGILLVVV 26 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH
Confidence 334444444333333
No 71
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=32.46 E-value=1.2e+02 Score=21.11 Aligned_cols=69 Identities=22% Similarity=0.253 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHhhhhCCCccc----chHHHHHHHHHHHHHHHHHhHHHHHHh
Q 038691 77 PFAFLEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHYSNDPNA----DRLNRLKGEMSHVRSVMIDNIEKIVER 152 (221)
Q Consensus 77 af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~~----dkl~~~~~~v~~v~~im~~ni~~~l~R 152 (221)
+-.=+.+....|...|..........++ ..+...|..+-.+|++.+.. +....+.+++++ .++.|.|
T Consensus 39 a~~~ar~~ind~vsrYRr~~~v~g~~Sf-ttm~tAlNaLAGHY~s~g~~PlPek~k~Rl~~el~~--------AE~al~R 109 (113)
T 2y6x_A 39 AQAEARKKLNDFFALYRRDDSLRSLSSF-MTMQTALNSLAGHYSSYPNRPLPEKLKARLEQEFKQ--------VELALDR 109 (113)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTSHHH-HHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccchH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH--------HHHHHHh
Confidence 3344445555677777644322222222 35577899999999655521 333455555554 4555666
Q ss_pred hh
Q 038691 153 GD 154 (221)
Q Consensus 153 ge 154 (221)
|-
T Consensus 110 g~ 111 (113)
T 2y6x_A 110 EA 111 (113)
T ss_dssp HH
T ss_pred cc
Confidence 63
No 72
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=32.43 E-value=83 Score=22.00 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHhhhhCCCcc---c-chHHHHHHHHHHH
Q 038691 76 IPFAFLEDIHQRFVRTYGRSIHSAAAYAMNDEFSRILSKQMDHYSNDPN---A-DRLNRLKGEMSHV 138 (221)
Q Consensus 76 ~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~yn~~~~---~-dkl~~~~~~v~~v 138 (221)
-+-.=+.+....|...|..........++ ..+...|..+-.+|++.+. . +....+.++++++
T Consensus 42 ~a~~~ar~~ind~vsrYRr~~~v~g~~Sf-~tm~tAlNaLAGHY~s~g~~PlPek~k~Rl~~el~~A 107 (115)
T 2kmf_A 42 EVQDTARGQINDYISRYRRKGDAGGLKSF-TTMQTALNSLAGYYTSYGARPIPEKLKKRLQLEFTQA 107 (115)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCSSSCHHH-HHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccccchH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Confidence 34444555555677777644222222222 3557789999999964442 1 3344566666554
No 73
>2fhw_B Relaxin 3 (prorelaxin H3) (insulin-like peptide INSL7) (insulin-like peptide 7); insulin/relaxin super-family fold, signaling protein; NMR {Synthetic} PDB: 2k1v_B*
Probab=32.39 E-value=20 Score=18.35 Aligned_cols=11 Identities=27% Similarity=0.899 Sum_probs=7.8
Q ss_pred HHHHhcCCCCC
Q 038691 206 TLAFYCRDPLW 216 (221)
Q Consensus 206 i~~~~c~gf~~ 216 (221)
.++.+|||..|
T Consensus 17 a~I~vCG~srw 27 (27)
T 2fhw_B 17 AVIFTCGGSRW 27 (27)
T ss_dssp HHHHHHTSSCC
T ss_pred HHHHhhcccCC
Confidence 45678988765
No 74
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=32.31 E-value=1.8e+02 Score=22.63 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHH
Q 038691 130 RLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATL 166 (221)
Q Consensus 130 ~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L 166 (221)
++.+.++++++.=.+.++..++....+...++.+..|
T Consensus 88 ~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~L 124 (214)
T 2cly_A 88 QKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYL 124 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444
No 75
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=31.20 E-value=53 Score=17.85 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038691 191 LASGLVCVILIIIYVTLA 208 (221)
Q Consensus 191 ~~~ii~~vv~~i~~ii~~ 208 (221)
...|++.++.+++++|+.
T Consensus 7 ~~sIaagVvglll~vii~ 24 (35)
T 1iij_A 7 VTFIIATVVGVLLFLILV 24 (35)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred CcEeHHHHHHHHHHHHHH
Confidence 344555555544444443
No 76
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=31.19 E-value=57 Score=16.63 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=17.7
Q ss_pred cchHHHHHHHHHHHHHHHHHh
Q 038691 125 ADRLNRLKGEMSHVRSVMIDN 145 (221)
Q Consensus 125 ~dkl~~~~~~v~~v~~im~~n 145 (221)
.+|+.-++.+++|-++++.++
T Consensus 5 ~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 5 ASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 478889999999999888765
No 77
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=30.53 E-value=57 Score=20.70 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=7.6
Q ss_pred HhhhhHHHHHHHHHHHH
Q 038691 186 WGNCKLASGLVCVILII 202 (221)
Q Consensus 186 w~~~k~~~ii~~vv~~i 202 (221)
|...++.-+++.+|+.+
T Consensus 13 Y~tLRiGGLifA~vLfi 29 (72)
T 2jo1_A 13 YQSLQIGGLVIAGILFI 29 (72)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred hHHhhccchHHHHHHHH
Confidence 34455544444444433
No 78
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=29.39 E-value=81 Score=18.10 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 038691 193 SGLVCVILIIIYVTLA 208 (221)
Q Consensus 193 ~ii~~vv~~i~~ii~~ 208 (221)
+.++++.++++++|++
T Consensus 35 fclilicllli~iivm 50 (52)
T 1fjk_A 35 FCLILIFLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444555555554
No 79
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=28.66 E-value=82 Score=21.53 Aligned_cols=42 Identities=24% Similarity=0.512 Sum_probs=30.3
Q ss_pred eEEEEEEeCCeEEeeccCCCCcHHHHHHHHHhhCCCCCCCCeeEEEeCCeEEEEEE
Q 038691 3 ILYGMVARGNVVLAEFSAAQTNGNAIARQVIDKLPQGISDRILSYSHDHYIFHVKR 58 (221)
Q Consensus 3 I~Ya~Iar~~~iLae~~~~~~~~~~~a~~il~~i~~~~~~~k~~~~~~~~~~~~l~ 58 (221)
|+|.-|++.. +|++++..| +++.- +.+.-++++|+..||...
T Consensus 86 iiyltiskdn--icqfsdekg----------eqidi--nsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 86 IIYLTISKDN--ICQFSDEKG----------EQIDI--NSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEECTTC--CEEEECTTS----------CEECC--CSSSSEEEETTEEEEEEE
T ss_pred EEEEEEecCc--ceecccccC----------cEeec--cccccceeecceEeehhc
Confidence 6777777765 467777655 24555 577789999999999865
No 80
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=28.13 E-value=71 Score=19.83 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=15.6
Q ss_pred HHHHhhhhhHHHHHhhHHHhhhHHHH
Q 038691 148 KIVERGDRLNLLVDKTATLHRNTVRF 173 (221)
Q Consensus 148 ~~l~Rge~l~~L~~ks~~L~~~s~~f 173 (221)
.++++|++|..|.+.+.........+
T Consensus 6 ~LveNgekI~~L~~~v~~~e~~Q~~l 31 (64)
T 3t97_C 6 TLIENGEKITSLHREVEKVKLDQKRL 31 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777666655444333
No 81
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=27.14 E-value=32 Score=21.60 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Q 038691 189 CKLASGLVCVILIIIYVTLAFYC 211 (221)
Q Consensus 189 ~k~~~ii~~vv~~i~~ii~~~~c 211 (221)
-++.++++.++.+++|+-..++|
T Consensus 8 p~~LivlGg~~~lll~~glcI~c 30 (70)
T 2klu_A 8 SMALIVLGGVAGLLLFIGLGIFF 30 (70)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445677777777776666675
No 82
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=26.94 E-value=46 Score=16.77 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 038691 127 RLNRLKGEMSHVRSVMID 144 (221)
Q Consensus 127 kl~~~~~~v~~v~~im~~ 144 (221)
-+.++++.+.++++.|..
T Consensus 6 i~~kiK~kl~~akdK~k~ 23 (26)
T 2kfe_A 6 FMSNLKEKLSGVKEKMKN 23 (26)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 466778888888777643
No 83
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=26.88 E-value=1.3e+02 Score=19.31 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=37.9
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhH
Q 038691 125 ADRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNT 170 (221)
Q Consensus 125 ~dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s 170 (221)
.+.+.....-+.++.++-.+.+..+-..||.|+...+..++.....
T Consensus 22 ~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l 67 (79)
T 1n7s_C 22 LESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDM 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHH
Confidence 3677788888899999999999999999999998887776665444
No 84
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=26.79 E-value=43 Score=17.67 Aligned_cols=22 Identities=5% Similarity=0.202 Sum_probs=10.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 038691 186 WGNCKLASGLVCVILIIIYVTL 207 (221)
Q Consensus 186 w~~~k~~~ii~~vv~~i~~ii~ 207 (221)
|...++.-++...++.++.+++
T Consensus 7 y~tLrigGLi~a~vLfi~gi~i 28 (31)
T 3n2f_G 7 YETVRNGGLIFAALAFIVGLII 28 (31)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHH
T ss_pred hHHHhhcchhHHHHHHHHHHHH
Confidence 4455555454444444444333
No 85
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=26.42 E-value=1.5e+02 Score=19.77 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHH
Q 038691 126 DRLNRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTAT 165 (221)
Q Consensus 126 dkl~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~ 165 (221)
.++..+-.++..++-.|..++++-.++.+.+-++.+|-..
T Consensus 33 ~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~ 72 (91)
T 2pjw_V 33 SKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISE 72 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999988877777776644
No 86
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=25.96 E-value=2.3e+02 Score=25.53 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=13.4
Q ss_pred hhhhHHHHHHhhhhCCCc
Q 038691 106 DEFSRILSKQMDHYSNDP 123 (221)
Q Consensus 106 ~~f~~~l~~~~~~yn~~~ 123 (221)
..|...+..+.+.|+..|
T Consensus 434 ~~~~~~~~~~~~~Y~~~~ 451 (592)
T 1f5n_A 434 RLFVQKLQDLKKKYYEEP 451 (592)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 457777888888896655
No 87
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=23.81 E-value=1.2e+02 Score=17.84 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhH
Q 038691 130 RLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNT 170 (221)
Q Consensus 130 ~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s 170 (221)
....-++++.++-.+.+..+-+.||+|+...+.-++.....
T Consensus 4 ~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l 44 (54)
T 1nhl_A 4 RILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHH
Confidence 34556778888999999999999999998777776655443
No 88
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.78 E-value=1.3e+02 Score=18.34 Aligned_cols=51 Identities=10% Similarity=0.169 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHHHH
Q 038691 133 GEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYKSS 183 (221)
Q Consensus 133 ~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~ 183 (221)
+++..++.-+.+-.+-+.++-+++-.=-++-+.|...|......|...++.
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~ 59 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTT 59 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544444444444444444444444555555555555555443
No 89
>2kbc_B INSL5_B-chain; peptide hormone, relaxin, insulin-like fold; HET: PCA; NMR {Synthetic}
Probab=23.70 E-value=7.6 Score=19.79 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=7.7
Q ss_pred HHHHhcCCCCCC
Q 038691 206 TLAFYCRDPLWR 217 (221)
Q Consensus 206 i~~~~c~gf~~~ 217 (221)
.++.+|||..|.
T Consensus 14 a~I~vCG~s~w~ 25 (26)
T 2kbc_B 14 TVIYICASSRWX 25 (26)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHhhcCCCccc
Confidence 456688877764
No 90
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=22.23 E-value=1.5e+02 Score=18.55 Aligned_cols=53 Identities=6% Similarity=0.050 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhhHHHhhhHHHHHHHHHHHH
Q 038691 129 NRLKGEMSHVRSVMIDNIEKIVERGDRLNLLVDKTATLHRNTVRFKRQARRYK 181 (221)
Q Consensus 129 ~~~~~~v~~v~~im~~ni~~~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~ 181 (221)
...-.-.++..++=...+..+-+-||+|+..+..-+.+..+.+.=.+..+.|+
T Consensus 15 rr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 15 RNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566667777788889999999999988888888777766666666554
No 91
>4ftx_A Protein SLM4; EGO complex, EGO3, TOR signaling, protein binding; 2.10A {Saccharomyces cerevisiae} PDB: 3lgo_A 4fuw_A
Probab=21.24 E-value=1.9e+02 Score=21.32 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=35.4
Q ss_pred CCeeEEEeCC---eEEEEEEeC-----------CEEEEEEEcCCCCcchHHHHHHHHHHHHhhccc
Q 038691 42 DRILSYSHDH---YIFHVKRTD-----------NLTVLCMADDSFGWRIPFAFLEDIHQRFVRTYG 93 (221)
Q Consensus 42 ~~k~~~~~~~---~~~~~l~~~-----------~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~ 93 (221)
.+...++.++ +.|+|-++| ++--+-|+|.+||.-+.-.=++.....|..-|+
T Consensus 93 ~ScY~~~i~~~~trIYTYEiEDLHaCVAqIP~SDLLLLfIAd~~yPyGLLv~KmK~al~af~dlyG 158 (170)
T 4ftx_A 93 NSCYPVEIDSFKTKIYTYEMEDLHTCVAQIPNSDLLLLFIAEGSFPYGLLVIKIERAMRELTDLFG 158 (170)
T ss_dssp SEEEEEEETTEEEEEEEEEETTEEEEEEECTTSSEEEEEEEETTSCHHHHHHHHHHHHGGGGGGTT
T ss_pred ccceeEEeccceeEEEEEEhhhhHHHHhcCCCCCeEEEEeecCCCchHHHHHHHHHHHHHHHHHhc
Confidence 4444555555 457777766 899999999999976654445555556666555
No 92
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=21.12 E-value=40 Score=22.65 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=24.9
Q ss_pred HHHHhhhhCCCccc-chHHHHHHHHHHHHHHHHHhHHHHHHh
Q 038691 112 LSKQMDHYSNDPNA-DRLNRLKGEMSHVRSVMIDNIEKIVER 152 (221)
Q Consensus 112 l~~~~~~yn~~~~~-dkl~~~~~~v~~v~~im~~ni~~~l~R 152 (221)
.+..+++||.+|.. +...++|+=+++....=+.|+.+++++
T Consensus 42 Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 42 YEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35556788655432 556666666666666666666666543
No 93
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.89 E-value=1.1e+02 Score=16.34 Aligned_cols=6 Identities=0% Similarity=0.484 Sum_probs=2.2
Q ss_pred HHHHHH
Q 038691 130 RLKGEM 135 (221)
Q Consensus 130 ~~~~~v 135 (221)
+++++|
T Consensus 5 QLEdKV 10 (34)
T 3c3f_A 5 QIEXKL 10 (34)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 94
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=20.20 E-value=1.3e+02 Score=16.75 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 038691 190 KLASGLVCVILIIIYVTLA 208 (221)
Q Consensus 190 k~~~ii~~vv~~i~~ii~~ 208 (221)
.+.+|+.++.+.++..|.+
T Consensus 11 ~i~lII~~vmaGiIG~Ill 29 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILL 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3455555555555544443
Done!