BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038692
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 114/183 (62%), Gaps = 3/183 (1%)
Query: 254 ISCSKACHCSETCNNRPFRKEK--KIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDD 311
I CS C + C+NR F++++ ++++ TE GWG+ AA+ + F++EY GEV+D
Sbjct: 94 IECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDH 153
Query: 312 ALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGET 371
+ R+ + ++Y ++ D IDAT KGN SRF+NHSC+PNC +KW V G+
Sbjct: 154 KEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQL 213
Query: 372 RVGVFAARSIKAGEPLTYDYRFVQFGPEV-KCYCGASSCQGYLGTKRKIGKLELCWGSKR 430
RVG F + + +G LT+DY+F ++G E KC+CG+++C+GYLG + ++ K+
Sbjct: 214 RVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGENRVSIRAAGGKMKK 273
Query: 431 KRS 433
+RS
Sbjct: 274 ERS 276
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 95/159 (59%), Gaps = 3/159 (1%)
Query: 259 ACHCSETCNNRPFRKEK--KIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDALCEQ 316
C C N+ F K + +++I +T GWG+ I KGEF+ EY+GE+ID+ C
Sbjct: 74 VCPAGGRCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRA 133
Query: 317 RLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGETRVGVF 376
R+ + + NFYM + KD IDA KGN++RF+NH C PNC +KW V G+TRVG+F
Sbjct: 134 RIRYAQEHDITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLF 193
Query: 377 AARSIKAGEPLTYDYRFVQFGP-EVKCYCGASSCQGYLG 414
A IKAG LT++Y G + C CGA +C G+LG
Sbjct: 194 ALSDIKAGTELTFNYNLECLGNGKTVCKCGAPNCSGFLG 232
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 97/172 (56%), Gaps = 7/172 (4%)
Query: 253 YISCS-KACHCSETCNNRPFRKEKKIKIV---KTEFCGWGVEAAEPINKGEFIIEYIGEV 308
+ CS C C E C N+ ++ + ++ + + E GWG+ EP+ G+FIIEY+GEV
Sbjct: 48 FAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEV 107
Query: 309 IDDALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVE 368
+ + R+ + +Y + Y + ID+ GN +RF+NHSCDPNC ++KW V
Sbjct: 108 VSEQEFRNRMIE-QYHNHSDHYCLNLDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSVN 166
Query: 369 GETRVGVFAARSIKAGEPLTYDYRFVQFGPEVK--CYCGASSCQGYLGTKRK 418
G R+G++A + + AG LTYDY F F E + C CG C+G +G K +
Sbjct: 167 GVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQLCKCGFEKCRGIIGGKSQ 218
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 91/189 (48%), Gaps = 23/189 (12%)
Query: 248 PPPVQYISCSKACHCSETCNNRPFRKEKKIK--IVKTEFC-GWGVEAAEPINKGEFIIEY 304
PP C+ C C C NR +K + I +T GWGV+ I + F++EY
Sbjct: 111 PPGTPIYECNSRCQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEY 170
Query: 305 IGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKD-FTIDATFKGNFSRFLNHSCDPNCILE 363
+GEVI E+R +G+ + + D FT+DA GN S F+NHSCDPN +
Sbjct: 171 VGEVITSEEAERRGQFYDNKGITYLFDLDYESDEFTVDAARYGNVSHFVNHSCDPNLQVF 230
Query: 364 KWQVEGET----RVGVFAARSIKAGEPLTYDYRF----------VQFGPEVK-----CYC 404
++ R+ +F+ R+I AGE LT+DY+ + P K C C
Sbjct: 231 NVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKC 290
Query: 405 GASSCQGYL 413
GA +C+GYL
Sbjct: 291 GAVTCRGYL 299
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 21/179 (11%)
Query: 244 NKVGPPPVQYISCSKACHCSETCNNRPFRKEKKIKI--VKTEFCGWGVEAAEPINKGEFI 301
NK+ PP + C++AC C C NR + K+++ +T GWGV A + I +G FI
Sbjct: 95 NKIEPPLI--FECNQACSCWRNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFI 152
Query: 302 IEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKD---FTIDATFKGNFSRFLNHSCDP 358
EY+GE+I DA + R D + N KD + IDA + GN SRF+NH CDP
Sbjct: 153 CEYVGELISDAEADVREDDSYLFDLDN-------KDGEVYCIDARYYGNISRFINHLCDP 205
Query: 359 NCI-LEKWQVEGET---RVGVFAARSIKAGEPLTYDY--RFVQFGPE-VKCYCGASSCQ 410
N I + + + + R+ F++R I+ GE L +DY RF + C CG+ C+
Sbjct: 206 NIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDIKSKYFTCQCGSEKCK 264
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 21/179 (11%)
Query: 244 NKVGPPPVQYISCSKACHCSETCNNRPFRKEKKIKI--VKTEFCGWGVEAAEPINKGEFI 301
NK+ PP + C++AC C C NR + K+++ +T GWGV A + I +G FI
Sbjct: 97 NKIEPPLI--FECNQACSCWRNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFI 154
Query: 302 IEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKD---FTIDATFKGNFSRFLNHSCDP 358
EY+GE+I DA + R D + N KD + IDA + GN SRF+NH CDP
Sbjct: 155 CEYVGELISDAEADVREDDSYLFDLDN-------KDGEVYCIDARYYGNISRFINHLCDP 207
Query: 359 NCI-LEKWQVEGET---RVGVFAARSIKAGEPLTYDY--RFVQFGPE-VKCYCGASSCQ 410
N I + + + + R+ F++R I+ GE L +DY RF + C CG+ C+
Sbjct: 208 NIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDIKSKYFTCQCGSEKCK 266
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 8/151 (5%)
Query: 271 FRKEKK-----IKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDALCEQRLWDMKYRG 325
FR KK + + ++ G G+ I+ GE +IEY G VI ++R +G
Sbjct: 43 FRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKG 102
Query: 326 VQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGE 385
+ YM I +DAT GN +RF+NHSC+PNC ++G+ + +FA R I GE
Sbjct: 103 I-GCYMFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGE 161
Query: 386 PLTYDYRF--VQFGPEVKCYCGASSCQGYLG 414
LTYDY+F ++ C CGA C+ +L
Sbjct: 162 ELTYDYKFPIEDASNKLPCNCGAKKCRKFLN 192
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 20/182 (10%)
Query: 241 LMENKVGPPPVQYISCSKACHCSETCNNRPFRK--EKKIKIVKTEFCGWGVEAAEPINKG 298
L E + PP+ + C+ AC C C NR + ++++ +T GWGV + + I G
Sbjct: 110 LPEFNMAEPPLIF-ECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPG 168
Query: 299 EFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKD---FTIDATFKGNFSRFLNHS 355
F+ EY+GE+I D+ + R D + N KD + IDA F GN SRF+NH
Sbjct: 169 TFVCEYVGELISDSEADVREEDSYLFDLDN-------KDGEVYCIDARFYGNVSRFINHH 221
Query: 356 CDPNCILEKWQVEGET----RVGVFAARSIKAGEPLTYDY--RFVQF-GPEVKCYCGASS 408
C+PN + + + + R+ F+ R I+AGE L +DY RF G C CG+
Sbjct: 222 CEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPK 281
Query: 409 CQ 410
C+
Sbjct: 282 CR 283
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 241 LMENKVGPPPVQYISCSKACHCSETCNNRPFRK--EKKIKIVKTEFCGWGVEAAEPINKG 298
L E + PP+ + C+ AC C C NR + ++++ +T GWGV + + I G
Sbjct: 112 LPEFNMAEPPLIF-ECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPG 170
Query: 299 EFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDP 358
F+ EY+GE+I D+ + R D + N + + + IDA F GN SRF+NH C+P
Sbjct: 171 TFVCEYVGELISDSEADVREEDSYLFDLDN----KDGEVYCIDARFYGNVSRFINHHCEP 226
Query: 359 NCILEKWQVEGET----RVGVFAARSIKAGEPLTYDY--RFVQF-GPEVKCYCGASSCQ 410
N + + + + R+ F+ R I+AGE L +DY RF G C CG+ C+
Sbjct: 227 NLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCR 285
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 20/182 (10%)
Query: 241 LMENKVGPPPVQYISCSKACHCSETCNNRPFRK--EKKIKIVKTEFCGWGVEAAEPINKG 298
L E + PP+ + C+ AC C C NR + ++++ +T GWGV + + I G
Sbjct: 86 LPEFNMAEPPLIF-ECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPG 144
Query: 299 EFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKD---FTIDATFKGNFSRFLNHS 355
F+ EY+GE+I D+ + R D + N KD + IDA F GN SRF+NH
Sbjct: 145 TFVCEYVGELISDSEADVREEDSYLFDLDN-------KDGEVYCIDARFYGNVSRFINHH 197
Query: 356 CDPNCILEKWQVEGET----RVGVFAARSIKAGEPLTYDY--RFVQF-GPEVKCYCGASS 408
C+PN + + + + R+ F+ R I+AGE L +DY RF G C CG+
Sbjct: 198 CEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPK 257
Query: 409 CQ 410
C+
Sbjct: 258 CR 259
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 27/185 (14%)
Query: 254 ISCSKACHCSETCNNRPFRK--EKKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDD 311
C+ C CS+ C NR +K + ++ KT GWG+ E I KG F+ EY GEV+
Sbjct: 103 FECNVLCRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGF 162
Query: 312 ALCEQRLWDMKYRGVQNF--------YMCEIRKDFTIDATFKGNFSRFLNHSCDPNCILE 363
+ ++R+ ++ + N+ Y ++ + F +D T+ GN RFLNHSC+PN ++
Sbjct: 163 SEVQRRIH-LQTKSDSNYIIAIREHVYNGQVMETF-VDPTYIGNIGRFLNHSCEPNLLMI 220
Query: 364 KWQVEGET-RVGVFAARSIKAGEPLTYDY--RFVQFGPEVK------------CYCGASS 408
+++ ++ +FAA+ I E L+YDY R++ CYCGA S
Sbjct: 221 PVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKS 280
Query: 409 CQGYL 413
C +L
Sbjct: 281 CTAFL 285
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 14/179 (7%)
Query: 241 LMENKVGPPPVQYISCSKACHCSETCNNRPFRK--EKKIKIVKTEFCGWGVEAAEPINKG 298
L E + PP+ + C+ AC C C NR + ++++ +T GWGV + + I G
Sbjct: 111 LPEFNMAEPPLIF-ECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPG 169
Query: 299 EFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNFSRFLNHSCDP 358
F+ EY+GE+I D+ + R D + N + + + IDA F GN SRF+NH C+P
Sbjct: 170 TFVCEYVGELISDSEADVREEDSYLFDLDN----KDGEVYCIDARFYGNVSRFINHHCEP 225
Query: 359 NCILEKWQVEGET----RVGVFAARSIKAGEPLTYDY--RFVQF-GPEVKCYCGASSCQ 410
N + + + + R+ F+ R I+AGE L +D RF G C CG+ C+
Sbjct: 226 NLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDAGERFWDIKGKLFSCRCGSPKCR 284
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 32/207 (15%)
Query: 239 KDLMENKVGPPPVQYISCSKACHCSETCNNRPFRKEKKI--KIVKTEFCGWGVEAAEPIN 296
K L+ ++V C + C CS+ C NR + + + +I +T+ GWGV+ I
Sbjct: 95 KGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIK 154
Query: 297 KGEFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIRK--------------DFTIDA 342
+G+F+ Y+GE+I ++R + ++ Y+ + K +D
Sbjct: 155 RGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDG 214
Query: 343 TFKGNFSRFLNHSCDPN-CILEKWQVEGETRV---GVFAARSIKAGEPLTYDYRFVQFGP 398
+ +RF+NHSCDPN I + + + +FA + I G LT+DY G
Sbjct: 215 EYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGL 274
Query: 399 E------------VKCYCGASSCQGYL 413
E KC CG + C+GYL
Sbjct: 275 ESDAHDPSKISEMTKCLCGTAKCRGYL 301
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 24/182 (13%)
Query: 256 CSKACHCSETCNNRPFRKEKKI--KIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDAL 313
C+ C CS C NR ++ + + +I KT+ GWGV + G FI Y+GEVI A
Sbjct: 116 CNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAE 175
Query: 314 CEQRLWDMKYRGVQNFYMCEIRKD---FTIDATFKGNFSRFLNHSCDPNCILEKWQVEGE 370
+R + G+ + ++ D +T+DA G+ SRF NHSC PN +
Sbjct: 176 AAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHG 235
Query: 371 TR----VGVFAARSIKAGEPLTYDYRFVQ-FGP--------------EVKCYCGASSCQG 411
R + FA + I+ E LT+DY + F P +C CG+++C+G
Sbjct: 236 FRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRG 295
Query: 412 YL 413
+L
Sbjct: 296 WL 297
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 273 KEKKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVID--DALCEQRLWDMK-YRGVQNF 329
KE+ +KI + G GV A + ++G+F++EY G++I+ DA + L+ G +
Sbjct: 27 KEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMY 86
Query: 330 YMCEIRKDFTIDATFKGN-FSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLT 388
Y + K + +DAT + N R +NHS NC + ++G + + A+R I AGE L
Sbjct: 87 YFQYLSKTYCVDATRETNRLGRLINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEELL 146
Query: 389 YDY 391
YDY
Sbjct: 147 YDY 149
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 273 KEKKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVID--DALCEQRLWDMK-YRGVQNF 329
KE+ +KI + G GV A + ++G+F++EY G++I+ DA + L+ G +
Sbjct: 29 KEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMY 88
Query: 330 YMCEIRKDFTIDATFKGN-FSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLT 388
Y + K + +DAT + N R +NHS NC + ++G + + A+R I AGE L
Sbjct: 89 YFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELL 148
Query: 389 YDY 391
YDY
Sbjct: 149 YDY 151
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 273 KEKKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVID--DALCEQRLWDMK-YRGVQNF 329
KE+ +KI + G GV A + ++G+F++EY G++I+ DA + L+ G +
Sbjct: 23 KEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMY 82
Query: 330 YMCEIRKDFTIDATFKGN-FSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLT 388
Y + K + +DAT + N R +NHS NC + ++G + + A+R I AGE L
Sbjct: 83 YFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELL 142
Query: 389 YDY 391
YDY
Sbjct: 143 YDY 145
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 273 KEKKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVID--DALCEQRLWDMK-YRGVQNF 329
KE+ +KI + G GV A + ++G+F++E+ G++I+ DA + L+ G +
Sbjct: 28 KEEGMKIDLIDGKGRGVIATKQFSRGDFVVEFHGDLIEITDAKKREALYAQDPSTGCYMY 87
Query: 330 YMCEIRKDFTIDATFKGN-FSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLT 388
Y + K + +DAT + N R +NHS NC + ++G + + A+R I AGE L
Sbjct: 88 YFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELL 147
Query: 389 YDY 391
YDY
Sbjct: 148 YDY 150
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 273 KEKKIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVID--DALCEQRLWDMK-YRGVQNF 329
KE+ +KI + G GV A + ++G+F++EY G++I+ DA + L+ G +
Sbjct: 28 KEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMY 87
Query: 330 YMCEIRKDFTIDATFKGN-FSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLT 388
Y + K + +DAT + N R +NHS NC + ++G + + A+R I AGE L
Sbjct: 88 YFQYLSKTYCVDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELL 147
Query: 389 YDY 391
+DY
Sbjct: 148 FDY 150
>pdb|1N3J|A Chain A, Structure And Substrate Of A Histone H3 Lysine
Methyltransferase From Paramecium Bursaria Chlorella
Virus 1
pdb|1N3J|B Chain B, Structure And Substrate Of A Histone H3 Lysine
Methyltransferase From Paramecium Bursaria Chlorella
Virus 1
pdb|2G46|A Chain A, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|2G46|B Chain B, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|3KMA|A Chain A, Crystal Structure Of Vset Under Condition A
pdb|3KMA|B Chain B, Crystal Structure Of Vset Under Condition A
pdb|3KMJ|A Chain A, Crystal Structure Of Vset Under Condition B
pdb|3KMT|A Chain A, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
pdb|3KMT|B Chain B, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
pdb|3KMT|C Chain C, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
Length = 119
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 276 KIKIVKTEFCGWGVEAAEPINKGEFIIEYIGEVIDDALCEQRLWDMKYRGVQNFYMCEIR 335
++ + K+ G+GV A + K GE++++ LC R D ++++ R
Sbjct: 5 RVIVKKSPLGGYGVFARKSFEK--------GELVEECLCIVRHNDDWGTALEDYLFS--R 54
Query: 336 KDFTIDATFKGNFSRFLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDY 391
K+ + A F NHS DPN E G R+ +F + I GE +T Y
Sbjct: 55 KNMSAMAL---GFGAIFNHSKDPNARHE--LTAGLKRMRIFTIKPIAIGEEITISY 105
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 351 FLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDY 391
LNHSCDPNC + V + + A R I+ GE LT Y
Sbjct: 203 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 239
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 351 FLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDY 391
LNHSCDPNC + V + + A R I+ GE LT Y
Sbjct: 205 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 241
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 351 FLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDY 391
LNHSCDPNC + V + + A R I+ GE LT Y
Sbjct: 204 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 240
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 351 FLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDY 391
LNHSCDPNC + V + + A R I+ GE LT Y
Sbjct: 203 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 239
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 351 FLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDY 391
LNHSCDPNC + V + + A R I+ GE LT Y
Sbjct: 239 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 275
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 351 FLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDY 391
LNHSCDPNC + V + + A R I+ GE LT Y
Sbjct: 204 LLNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 240
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 351 FLNHSCDPNCILEKWQVEGETRVGVFAARSIKAGEPLTYDYRFVQFGPEVKCYCGASSCQ 410
F+NH C PNC K+ G V A R I+ GE ++ Y FG E +C +C+
Sbjct: 208 FINHDCRPNC---KFVSTGRDTACVKALRDIEPGEEISCYYGDGFFG-ENNEFCECYTCE 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,713,529
Number of Sequences: 62578
Number of extensions: 589134
Number of successful extensions: 1615
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1547
Number of HSP's gapped (non-prelim): 38
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)