Query 038698
Match_columns 283
No_of_seqs 333 out of 1039
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:26:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 6.9E-71 1.5E-75 541.6 12.3 193 91-283 1-197 (506)
2 PF08241 Methyltransf_11: Meth 99.3 5.7E-12 1.2E-16 94.5 6.6 71 208-280 1-73 (95)
3 COG2226 UbiE Methylase involve 99.3 6.4E-12 1.4E-16 115.4 8.0 90 187-279 37-131 (238)
4 PRK10258 biotin biosynthesis p 99.3 1.1E-11 2.5E-16 111.5 7.5 87 190-282 31-117 (251)
5 PF07021 MetW: Methionine bios 99.2 1.1E-11 2.5E-16 110.6 6.7 82 190-279 4-87 (193)
6 PF01209 Ubie_methyltran: ubiE 99.2 3E-11 6.4E-16 110.1 7.2 87 190-278 36-127 (233)
7 PRK05785 hypothetical protein; 99.2 4.6E-11 9.9E-16 107.8 7.0 70 205-279 53-122 (226)
8 PLN02233 ubiquinone biosynthes 99.2 1.2E-10 2.6E-15 107.1 9.0 86 192-280 64-158 (261)
9 PRK11088 rrmA 23S rRNA methylt 99.1 1.9E-10 4.1E-15 105.7 9.1 83 191-276 76-160 (272)
10 TIGR03587 Pse_Me-ase pseudamin 99.1 1.3E-10 2.8E-15 103.6 7.3 89 189-280 30-118 (204)
11 PRK14103 trans-aconitate 2-met 99.1 1.9E-10 4E-15 104.4 7.3 85 190-281 18-102 (255)
12 PLN02244 tocopherol O-methyltr 99.1 2.8E-10 6.2E-15 108.4 8.3 92 187-280 99-199 (340)
13 PTZ00098 phosphoethanolamine N 99.1 6.5E-10 1.4E-14 102.3 9.3 88 189-280 40-130 (263)
14 TIGR02072 BioC biotin biosynth 99.0 1E-09 2.2E-14 95.8 7.8 76 204-281 35-111 (240)
15 PRK08317 hypothetical protein; 99.0 1.9E-09 4.1E-14 93.8 9.2 92 187-280 5-100 (241)
16 TIGR02752 MenG_heptapren 2-hep 99.0 1.3E-09 2.8E-14 96.6 8.2 89 187-277 31-124 (231)
17 PF13649 Methyltransf_25: Meth 99.0 4.7E-10 1E-14 87.7 4.2 70 207-276 1-76 (101)
18 PRK01683 trans-aconitate 2-met 99.0 1.3E-09 2.8E-14 98.5 7.3 88 189-281 19-106 (258)
19 PRK06202 hypothetical protein; 98.9 3.9E-09 8.4E-14 94.4 8.7 74 204-278 61-140 (232)
20 PF13847 Methyltransf_31: Meth 98.9 2.3E-09 5E-14 89.7 6.6 72 205-277 5-83 (152)
21 PF13489 Methyltransf_23: Meth 98.9 2E-09 4.3E-14 88.5 5.8 85 187-281 7-91 (161)
22 COG2227 UbiG 2-polyprenyl-3-me 98.9 9.5E-10 2.1E-14 101.3 4.2 120 148-279 9-136 (243)
23 TIGR02081 metW methionine bios 98.9 4.4E-09 9.6E-14 91.7 7.6 80 190-277 4-85 (194)
24 PRK11036 putative S-adenosyl-L 98.9 3.2E-09 6.9E-14 96.5 6.2 71 204-277 45-122 (255)
25 PLN02336 phosphoethanolamine N 98.9 7.4E-09 1.6E-13 101.8 8.8 86 191-280 256-345 (475)
26 smart00138 MeTrc Methyltransfe 98.8 7.6E-09 1.6E-13 95.6 8.1 104 178-281 69-217 (264)
27 PRK07580 Mg-protoporphyrin IX 98.8 7.9E-09 1.7E-13 91.0 7.4 88 188-281 47-141 (230)
28 PRK15068 tRNA mo(5)U34 methylt 98.8 1.1E-08 2.3E-13 97.3 8.2 86 190-280 111-202 (322)
29 PRK11207 tellurite resistance 98.8 1.2E-08 2.7E-13 89.8 8.0 80 192-277 21-105 (197)
30 KOG1541 Predicted protein carb 98.8 6.6E-09 1.4E-13 95.3 5.9 87 190-281 37-125 (270)
31 TIGR02021 BchM-ChlM magnesium 98.8 9.7E-09 2.1E-13 90.9 6.9 88 187-280 39-132 (219)
32 PLN02585 magnesium protoporphy 98.8 1.3E-08 2.7E-13 97.0 7.5 86 190-281 130-226 (315)
33 PLN02396 hexaprenyldihydroxybe 98.8 5.8E-09 1.3E-13 99.5 5.1 73 205-280 133-211 (322)
34 TIGR00477 tehB tellurite resis 98.8 1.4E-08 3E-13 89.3 7.0 83 190-278 19-105 (195)
35 PRK13944 protein-L-isoaspartat 98.7 8E-08 1.7E-12 85.1 9.3 88 188-277 59-152 (205)
36 PF12847 Methyltransf_18: Meth 98.7 6.2E-08 1.3E-12 75.8 7.3 67 205-275 3-78 (112)
37 TIGR00452 methyltransferase, p 98.7 6.5E-08 1.4E-12 92.1 8.8 86 191-281 111-202 (314)
38 PF02353 CMAS: Mycolic acid cy 98.7 4.2E-08 9.2E-13 91.5 6.8 96 175-278 36-138 (273)
39 COG4106 Tam Trans-aconitate me 98.7 2.2E-08 4.7E-13 91.7 4.7 88 190-282 19-106 (257)
40 PLN02490 MPBQ/MSBQ methyltrans 98.6 8.1E-08 1.8E-12 92.5 8.1 76 205-281 115-192 (340)
41 PRK12335 tellurite resistance 98.6 6.9E-08 1.5E-12 89.7 7.3 69 205-277 122-194 (287)
42 PRK00216 ubiE ubiquinone/menaq 98.6 1.5E-07 3.3E-12 82.4 9.0 89 189-279 39-133 (239)
43 PRK11873 arsM arsenite S-adeno 98.6 8.4E-08 1.8E-12 87.6 7.5 73 205-277 79-156 (272)
44 COG4976 Predicted methyltransf 98.6 6.1E-09 1.3E-13 96.1 -0.0 84 192-278 113-199 (287)
45 PRK06922 hypothetical protein; 98.6 9E-08 1.9E-12 99.0 7.9 75 205-280 420-500 (677)
46 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 1.9E-07 4.2E-12 81.0 8.7 88 188-277 26-116 (223)
47 PRK13942 protein-L-isoaspartat 98.6 2.3E-07 5E-12 82.8 8.9 89 187-277 62-155 (212)
48 PF08003 Methyltransf_9: Prote 98.6 1.5E-07 3.2E-12 89.7 7.9 86 191-279 105-194 (315)
49 COG2230 Cfa Cyclopropane fatty 98.6 1.1E-07 2.3E-12 89.8 6.9 98 175-278 46-148 (283)
50 smart00650 rADc Ribosomal RNA 98.6 1.7E-07 3.7E-12 80.2 7.5 80 191-275 3-85 (169)
51 PRK11705 cyclopropane fatty ac 98.6 1.5E-07 3.2E-12 91.7 7.9 84 187-277 153-238 (383)
52 PF05401 NodS: Nodulation prot 98.6 2.4E-07 5.2E-12 83.5 8.6 87 188-280 30-119 (201)
53 TIGR00740 methyltransferase, p 98.6 1.2E-07 2.7E-12 85.1 6.6 71 205-277 55-132 (239)
54 TIGR00080 pimt protein-L-isoas 98.5 2.5E-07 5.5E-12 82.2 8.2 87 189-277 65-156 (215)
55 PLN02336 phosphoethanolamine N 98.5 1.6E-07 3.6E-12 92.3 7.5 84 190-278 26-114 (475)
56 KOG3010 Methyltransferase [Gen 98.5 1E-07 2.2E-12 88.2 5.0 88 190-282 21-114 (261)
57 PRK00121 trmB tRNA (guanine-N( 98.5 1.4E-07 3.1E-12 83.4 5.5 75 205-281 42-124 (202)
58 PRK11188 rrmJ 23S rRNA methylt 98.5 8.3E-08 1.8E-12 85.8 3.7 80 190-277 39-127 (209)
59 PRK15451 tRNA cmo(5)U34 methyl 98.5 2.4E-07 5.1E-12 84.2 6.5 71 205-277 58-135 (247)
60 PF08242 Methyltransf_12: Meth 98.5 1.8E-08 3.9E-13 78.0 -0.8 71 208-279 1-78 (99)
61 TIGR03534 RF_mod_PrmC protein- 98.5 1.1E-06 2.3E-11 78.3 10.2 85 186-275 73-162 (251)
62 KOG1540 Ubiquinone biosynthesi 98.4 6.4E-07 1.4E-11 83.8 7.8 91 189-281 88-191 (296)
63 TIGR03840 TMPT_Se_Te thiopurin 98.4 1.1E-06 2.4E-11 79.1 8.6 71 205-278 36-124 (213)
64 TIGR02469 CbiT precorrin-6Y C5 98.4 1.8E-06 3.9E-11 68.0 8.9 85 190-277 8-98 (124)
65 smart00828 PKS_MT Methyltransf 98.4 4.3E-07 9.3E-12 80.1 5.7 71 206-278 2-78 (224)
66 PF03848 TehB: Tellurite resis 98.4 1.1E-06 2.4E-11 78.6 8.0 80 192-277 21-104 (192)
67 PRK00107 gidB 16S rRNA methylt 98.4 6.4E-07 1.4E-11 79.3 6.4 69 205-275 47-120 (187)
68 COG2813 RsmC 16S RNA G1207 met 98.4 1.5E-06 3.2E-11 82.6 9.1 102 170-275 126-232 (300)
69 TIGR00406 prmA ribosomal prote 98.4 1E-06 2.2E-11 82.3 7.8 69 205-275 161-233 (288)
70 PRK00274 ksgA 16S ribosomal RN 98.4 9.6E-07 2.1E-11 81.8 7.1 81 189-274 30-112 (272)
71 PRK14967 putative methyltransf 98.4 2.9E-06 6.4E-11 75.8 10.0 68 205-275 38-109 (223)
72 TIGR00138 gidB 16S rRNA methyl 98.3 1.2E-06 2.6E-11 76.8 7.1 69 205-275 44-117 (181)
73 TIGR00537 hemK_rel_arch HemK-r 98.3 1.7E-06 3.6E-11 74.5 7.6 69 205-278 21-93 (179)
74 PRK14896 ksgA 16S ribosomal RN 98.3 1.7E-06 3.6E-11 79.5 8.0 83 187-276 15-100 (258)
75 PF13659 Methyltransf_26: Meth 98.3 5.8E-07 1.2E-11 71.0 4.3 72 205-278 2-81 (117)
76 PRK09489 rsmC 16S ribosomal RN 98.3 2.7E-06 5.9E-11 81.8 9.7 92 181-277 175-271 (342)
77 TIGR01983 UbiG ubiquinone bios 98.3 1.2E-06 2.5E-11 77.1 6.4 71 204-277 46-122 (224)
78 KOG1270 Methyltransferases [Co 98.3 3.2E-07 7E-12 85.8 2.8 69 205-279 91-170 (282)
79 PRK15001 SAM-dependent 23S rib 98.3 3.6E-06 7.7E-11 82.3 10.1 102 172-277 198-308 (378)
80 PF05175 MTS: Methyltransferas 98.3 2.9E-06 6.2E-11 73.0 8.5 79 192-274 22-105 (170)
81 PRK05134 bifunctional 3-demeth 98.3 2.2E-06 4.7E-11 76.2 7.8 87 188-279 35-126 (233)
82 PRK13255 thiopurine S-methyltr 98.3 3.5E-06 7.5E-11 76.2 9.2 71 205-278 39-127 (218)
83 TIGR00091 tRNA (guanine-N(7)-) 98.3 9.9E-07 2.2E-11 77.4 5.4 75 205-281 18-100 (194)
84 PRK14121 tRNA (guanine-N(7)-)- 98.3 2.2E-06 4.8E-11 84.1 7.8 76 205-282 124-206 (390)
85 TIGR00478 tly hemolysin TlyA f 98.3 3.5E-06 7.6E-11 77.1 8.7 103 170-277 44-153 (228)
86 PRK00517 prmA ribosomal protei 98.3 9E-07 2E-11 80.7 4.6 75 189-275 109-187 (250)
87 KOG2940 Predicted methyltransf 98.2 6.9E-07 1.5E-11 82.9 3.5 77 203-282 72-151 (325)
88 PRK08287 cobalt-precorrin-6Y C 98.2 6.5E-06 1.4E-10 71.3 9.3 80 192-276 22-106 (187)
89 PRK14968 putative methyltransf 98.2 4.5E-06 9.7E-11 70.9 7.4 69 205-277 25-100 (188)
90 TIGR01177 conserved hypothetic 98.2 5.1E-06 1.1E-10 78.7 8.0 79 191-274 172-255 (329)
91 PRK13168 rumA 23S rRNA m(5)U19 98.2 3.8E-06 8.2E-11 82.8 7.3 83 187-274 283-374 (443)
92 PRK13943 protein-L-isoaspartat 98.2 5.9E-06 1.3E-10 79.1 8.0 86 189-276 68-158 (322)
93 PRK00312 pcm protein-L-isoaspa 98.2 9.2E-06 2E-10 71.7 8.7 83 190-277 67-154 (212)
94 PLN03075 nicotianamine synthas 98.1 5.1E-06 1.1E-10 78.9 6.9 78 203-281 123-208 (296)
95 PRK14966 unknown domain/N5-glu 98.1 1.3E-05 2.7E-10 79.6 9.8 85 186-275 238-327 (423)
96 PRK10901 16S rRNA methyltransf 98.1 1.3E-05 2.9E-10 78.7 9.9 79 192-273 235-319 (427)
97 PHA03412 putative methyltransf 98.1 3.9E-06 8.4E-11 77.6 5.6 69 205-274 51-121 (241)
98 TIGR03438 probable methyltrans 98.1 9.4E-06 2E-10 76.2 7.8 75 188-266 52-133 (301)
99 PF01135 PCMT: Protein-L-isoas 98.1 8.8E-06 1.9E-10 73.4 7.1 89 187-277 58-151 (209)
100 TIGR00755 ksgA dimethyladenosi 98.1 1.1E-05 2.4E-10 73.6 7.7 80 189-275 17-102 (253)
101 PF03141 Methyltransf_29: Puta 98.1 3.5E-06 7.5E-11 84.7 4.6 139 122-282 293-442 (506)
102 PRK09328 N5-glutamine S-adenos 98.1 2.2E-05 4.8E-10 71.2 9.4 85 187-275 94-183 (275)
103 PRK03522 rumB 23S rRNA methylu 98.1 7.1E-06 1.5E-10 77.4 6.3 83 187-274 159-247 (315)
104 TIGR03533 L3_gln_methyl protei 98.1 3.3E-05 7.2E-10 72.2 10.6 68 205-274 123-196 (284)
105 PHA03411 putative methyltransf 98.0 8.6E-06 1.9E-10 76.8 6.5 71 205-277 66-136 (279)
106 TIGR02716 C20_methyl_CrtF C-20 98.0 1.9E-05 4.1E-10 73.6 8.7 86 190-281 138-229 (306)
107 COG2264 PrmA Ribosomal protein 98.0 1.3E-05 2.8E-10 76.3 7.6 80 190-275 153-237 (300)
108 PRK04266 fibrillarin; Provisio 98.0 2.2E-05 4.9E-10 71.4 8.4 78 195-276 66-150 (226)
109 cd02440 AdoMet_MTases S-adenos 98.0 1.3E-05 2.8E-10 58.7 5.5 71 206-278 1-77 (107)
110 PRK11805 N5-glutamine S-adenos 98.0 2.6E-05 5.6E-10 73.9 8.9 68 205-274 135-208 (307)
111 KOG1271 Methyltransferases [Ge 98.0 1.2E-05 2.7E-10 72.3 6.3 72 205-277 69-146 (227)
112 PRK00377 cbiT cobalt-precorrin 98.0 1.2E-05 2.6E-10 70.6 6.1 77 196-274 35-118 (198)
113 TIGR00438 rrmJ cell division p 98.0 1.2E-05 2.5E-10 69.9 5.5 79 190-276 20-107 (188)
114 TIGR00536 hemK_fam HemK family 98.0 2.6E-05 5.6E-10 72.5 8.0 85 187-274 99-189 (284)
115 TIGR03704 PrmC_rel_meth putati 97.9 7.2E-05 1.6E-09 68.8 9.9 89 185-275 69-161 (251)
116 COG4123 Predicted O-methyltran 97.9 3.8E-05 8.1E-10 71.4 7.6 88 182-274 27-122 (248)
117 PTZ00338 dimethyladenosine tra 97.9 3.6E-05 7.8E-10 72.7 7.2 81 188-275 23-109 (294)
118 PRK00811 spermidine synthase; 97.8 4.5E-05 9.8E-10 71.3 7.5 87 187-275 60-158 (283)
119 PF06325 PrmA: Ribosomal prote 97.8 2.6E-05 5.7E-10 73.9 5.9 78 190-275 152-233 (295)
120 PRK14904 16S rRNA methyltransf 97.8 4.6E-05 1E-09 75.3 7.6 76 195-273 244-324 (445)
121 PRK04148 hypothetical protein; 97.8 6E-05 1.3E-09 64.1 7.2 79 191-276 6-86 (134)
122 PRK14903 16S rRNA methyltransf 97.8 4.5E-05 9.7E-10 75.4 6.9 79 193-273 229-313 (431)
123 PRK14901 16S rRNA methyltransf 97.8 5.4E-05 1.2E-09 74.6 7.3 80 192-273 243-331 (434)
124 TIGR00563 rsmB ribosomal RNA s 97.8 5.8E-05 1.2E-09 74.2 7.5 79 192-273 229-315 (426)
125 PRK11727 23S rRNA mA1618 methy 97.8 6.5E-05 1.4E-09 72.1 7.7 89 185-274 90-196 (321)
126 TIGR00479 rumA 23S rRNA (uraci 97.8 4.6E-05 9.9E-10 74.6 6.7 82 188-274 279-369 (431)
127 COG2890 HemK Methylase of poly 97.8 9.2E-05 2E-09 69.4 8.3 66 206-275 113-184 (280)
128 KOG4300 Predicted methyltransf 97.7 1.8E-05 3.9E-10 72.4 2.9 70 206-277 79-155 (252)
129 PRK14902 16S rRNA methyltransf 97.7 9E-05 1.9E-09 73.1 7.8 81 191-274 240-327 (444)
130 PTZ00146 fibrillarin; Provisio 97.7 6.5E-05 1.4E-09 71.4 6.1 79 198-280 129-214 (293)
131 TIGR00446 nop2p NOL1/NOP2/sun 97.7 7.9E-05 1.7E-09 68.8 6.4 76 196-273 66-146 (264)
132 PRK10909 rsmD 16S rRNA m(2)G96 97.7 0.00018 4E-09 64.4 8.4 101 169-274 21-128 (199)
133 PRK01581 speE spermidine synth 97.7 0.00012 2.6E-09 71.7 7.6 122 144-274 98-233 (374)
134 PRK13256 thiopurine S-methyltr 97.7 0.00018 3.9E-09 66.0 8.1 72 205-279 45-136 (226)
135 PRK01544 bifunctional N5-gluta 97.6 8.4E-05 1.8E-09 75.0 6.0 69 205-275 140-214 (506)
136 PRK07402 precorrin-6B methylas 97.5 0.00026 5.7E-09 61.8 7.3 79 192-273 31-115 (196)
137 PRK03612 spermidine synthase; 97.5 0.00021 4.5E-09 72.3 7.1 87 188-275 282-381 (521)
138 COG2263 Predicted RNA methylas 97.5 0.00052 1.1E-08 61.9 8.7 83 186-275 30-116 (198)
139 PRK04457 spermidine synthase; 97.5 0.00019 4E-09 66.5 6.1 85 188-274 52-143 (262)
140 PF03291 Pox_MCEL: mRNA cappin 97.5 0.00022 4.7E-09 68.7 6.4 73 203-277 62-155 (331)
141 TIGR02085 meth_trns_rumB 23S r 97.5 0.00021 4.5E-09 69.3 6.3 98 170-274 200-307 (374)
142 PLN02366 spermidine synthase 97.5 0.00061 1.3E-08 64.9 9.2 122 144-274 37-172 (308)
143 COG2518 Pcm Protein-L-isoaspar 97.5 0.00038 8.3E-09 63.3 7.3 83 189-277 60-148 (209)
144 TIGR00417 speE spermidine synt 97.4 0.00045 9.7E-09 63.9 7.8 88 188-276 57-154 (270)
145 COG0500 SmtA SAM-dependent met 97.4 0.00056 1.2E-08 50.4 6.1 71 207-281 52-132 (257)
146 PF05148 Methyltransf_8: Hypot 97.2 0.00052 1.1E-08 62.8 5.0 58 205-277 74-132 (219)
147 PF00891 Methyltransf_2: O-met 97.1 0.0016 3.5E-08 58.4 7.5 84 191-282 90-173 (241)
148 PF01170 UPF0020: Putative RNA 97.1 0.0015 3.3E-08 57.1 6.8 81 192-274 19-113 (179)
149 PRK11783 rlmL 23S rRNA m(2)G24 97.0 0.0016 3.5E-08 68.2 7.8 68 205-274 540-615 (702)
150 PF02390 Methyltransf_4: Putat 97.0 0.0012 2.7E-08 58.7 5.8 75 205-281 19-101 (195)
151 PF05724 TPMT: Thiopurine S-me 97.0 0.0024 5.1E-08 58.0 7.6 71 205-278 39-127 (218)
152 COG2242 CobL Precorrin-6B meth 97.0 0.0033 7.1E-08 56.4 7.8 76 193-274 26-109 (187)
153 PLN02781 Probable caffeoyl-CoA 96.9 0.0025 5.4E-08 58.0 6.4 83 187-274 57-151 (234)
154 PRK11760 putative 23S rRNA C24 96.8 0.0065 1.4E-07 59.3 9.1 67 205-276 213-279 (357)
155 KOG0820 Ribosomal RNA adenine 96.8 0.0049 1.1E-07 58.7 8.0 80 190-274 47-130 (315)
156 PRK10611 chemotaxis methyltran 96.8 0.0046 1E-07 58.6 7.8 101 178-280 92-236 (287)
157 PF01739 CheR: CheR methyltran 96.7 0.0057 1.2E-07 54.8 7.7 102 180-281 3-150 (196)
158 PRK15128 23S rRNA m(5)C1962 me 96.7 0.0061 1.3E-07 60.0 8.3 68 205-274 222-300 (396)
159 KOG2904 Predicted methyltransf 96.7 0.005 1.1E-07 58.7 7.2 89 186-275 130-230 (328)
160 KOG1499 Protein arginine N-met 96.7 0.0054 1.2E-07 59.7 7.3 86 187-274 46-134 (346)
161 PLN02672 methionine S-methyltr 96.6 0.0026 5.6E-08 69.8 5.0 71 205-277 120-213 (1082)
162 KOG3045 Predicted RNA methylas 96.6 0.0026 5.7E-08 60.2 4.4 71 190-277 168-238 (325)
163 KOG1975 mRNA cap methyltransfe 96.6 0.0023 5E-08 62.1 4.0 71 205-277 119-206 (389)
164 COG0220 Predicted S-adenosylme 96.4 0.0046 9.9E-08 56.8 5.1 76 205-282 50-133 (227)
165 COG0030 KsgA Dimethyladenosine 96.4 0.014 3.1E-07 54.7 8.4 81 189-274 18-102 (259)
166 TIGR00095 RNA methyltransferas 96.4 0.0093 2E-07 52.7 6.6 99 170-273 18-127 (189)
167 PF09243 Rsm22: Mitochondrial 96.4 0.0091 2E-07 55.7 6.7 84 190-278 22-113 (274)
168 PF13679 Methyltransf_32: Meth 96.3 0.004 8.8E-08 52.1 3.9 59 187-247 7-72 (141)
169 PF01728 FtsJ: FtsJ-like methy 96.3 0.0086 1.9E-07 51.4 5.9 41 185-225 4-45 (181)
170 PRK04338 N(2),N(2)-dimethylgua 96.3 0.0041 8.8E-08 61.0 3.9 68 205-274 59-132 (382)
171 PF10294 Methyltransf_16: Puta 96.2 0.016 3.5E-07 50.3 6.8 75 204-278 46-130 (173)
172 KOG2361 Predicted methyltransf 96.2 0.012 2.5E-07 55.2 6.1 89 190-278 58-155 (264)
173 COG1041 Predicted DNA modifica 96.0 0.016 3.5E-07 56.5 6.8 80 189-273 185-270 (347)
174 TIGR02143 trmA_only tRNA (urac 96.0 0.01 2.3E-07 57.3 5.5 67 187-259 184-255 (353)
175 PF02384 N6_Mtase: N-6 DNA Met 96.0 0.0088 1.9E-07 55.7 4.6 85 189-275 34-133 (311)
176 KOG1661 Protein-L-isoaspartate 96.0 0.017 3.7E-07 53.2 6.2 72 205-276 84-171 (237)
177 PRK00050 16S rRNA m(4)C1402 me 95.9 0.013 2.8E-07 55.9 5.5 84 190-275 8-98 (296)
178 PF05219 DREV: DREV methyltran 95.9 0.022 4.8E-07 53.6 6.8 69 203-278 94-162 (265)
179 COG3963 Phospholipid N-methylt 95.8 0.02 4.3E-07 51.3 5.9 85 190-276 37-126 (194)
180 COG2519 GCD14 tRNA(1-methylade 95.8 0.028 6.2E-07 52.7 7.1 85 192-280 85-175 (256)
181 PRK05031 tRNA (uracil-5-)-meth 95.8 0.018 3.9E-07 55.8 6.0 80 174-259 176-264 (362)
182 PF05958 tRNA_U5-meth_tr: tRNA 95.6 0.025 5.5E-07 54.6 6.2 73 180-258 172-253 (352)
183 PLN02823 spermine synthase 95.5 0.051 1.1E-06 52.6 7.9 86 188-274 88-183 (336)
184 COG1352 CheR Methylase of chem 95.5 0.064 1.4E-06 50.5 8.3 68 178-245 67-146 (268)
185 PF00398 RrnaAD: Ribosomal RNA 95.4 0.041 8.9E-07 50.7 6.7 83 187-274 16-104 (262)
186 COG2265 TrmA SAM-dependent met 95.4 0.057 1.2E-06 54.0 7.8 97 170-273 260-368 (432)
187 PRK01544 bifunctional N5-gluta 95.2 0.028 6.2E-07 56.9 5.3 76 204-281 348-430 (506)
188 TIGR02987 met_A_Alw26 type II 95.2 0.043 9.3E-07 55.4 6.6 43 204-246 32-81 (524)
189 PF02475 Met_10: Met-10+ like- 95.2 0.17 3.6E-06 45.7 9.6 101 167-275 69-177 (200)
190 PLN02476 O-methyltransferase 95.2 0.039 8.4E-07 52.2 5.8 70 204-273 119-200 (278)
191 PF08704 GCD14: tRNA methyltra 95.1 0.06 1.3E-06 50.1 6.6 88 190-281 29-126 (247)
192 TIGR01444 fkbM_fam methyltrans 94.9 0.03 6.4E-07 45.7 3.6 39 206-245 1-39 (143)
193 KOG1331 Predicted methyltransf 94.8 0.0088 1.9E-07 56.9 0.4 70 205-280 47-116 (293)
194 PF05891 Methyltransf_PK: AdoM 94.8 0.058 1.2E-06 49.6 5.6 75 203-279 55-134 (218)
195 PLN02232 ubiquinone biosynthes 94.8 0.03 6.5E-07 47.8 3.5 30 251-280 28-57 (160)
196 KOG3420 Predicted RNA methylas 94.7 0.049 1.1E-06 48.0 4.7 67 205-275 50-122 (185)
197 PF06080 DUF938: Protein of un 94.7 0.12 2.6E-06 47.1 7.2 87 187-277 12-112 (204)
198 PF05185 PRMT5: PRMT5 arginine 94.1 0.12 2.6E-06 51.9 6.6 89 187-276 164-267 (448)
199 PRK11783 rlmL 23S rRNA m(2)G24 94.1 0.15 3.2E-06 53.7 7.4 45 230-274 258-310 (702)
200 COG4122 Predicted O-methyltran 93.7 0.32 7E-06 44.6 8.1 85 184-273 45-138 (219)
201 PF02527 GidB: rRNA small subu 93.1 0.37 8.1E-06 42.8 7.3 69 206-276 51-124 (184)
202 KOG2899 Predicted methyltransf 93.1 0.11 2.5E-06 48.9 4.1 52 194-246 49-100 (288)
203 TIGR00308 TRM1 tRNA(guanine-26 92.8 0.33 7.1E-06 47.7 7.1 103 169-273 3-120 (374)
204 PF09445 Methyltransf_15: RNA 92.0 0.42 9.1E-06 42.0 6.1 67 205-275 1-77 (163)
205 PRK11933 yebU rRNA (cytosine-C 91.9 0.39 8.4E-06 48.6 6.5 71 205-275 115-195 (470)
206 COG0421 SpeE Spermidine syntha 91.6 0.63 1.4E-05 44.1 7.2 86 188-274 61-156 (282)
207 KOG2915 tRNA(1-methyladenosine 91.4 0.7 1.5E-05 44.3 7.2 89 190-281 94-190 (314)
208 TIGR03439 methyl_EasF probable 91.2 0.39 8.6E-06 46.2 5.5 57 187-247 64-123 (319)
209 PF01596 Methyltransf_3: O-met 90.9 0.38 8.2E-06 43.4 4.8 82 187-273 34-127 (205)
210 PLN02589 caffeoyl-CoA O-methyl 90.4 0.54 1.2E-05 43.7 5.4 82 187-273 68-162 (247)
211 KOG3178 Hydroxyindole-O-methyl 90.2 0.43 9.4E-06 46.6 4.8 72 203-282 177-251 (342)
212 PF03492 Methyltransf_7: SAM d 90.1 0.38 8.3E-06 46.3 4.4 25 257-282 97-121 (334)
213 KOG2352 Predicted spermine/spe 89.6 0.43 9.3E-06 48.5 4.4 71 206-278 51-125 (482)
214 KOG1500 Protein arginine N-met 88.7 1.6 3.6E-05 43.2 7.5 67 204-274 178-250 (517)
215 COG0357 GidB Predicted S-adeno 88.1 1.2 2.6E-05 40.8 5.9 88 186-276 47-144 (215)
216 KOG1269 SAM-dependent methyltr 88.0 0.42 9.1E-06 46.9 3.1 71 205-277 112-188 (364)
217 COG0116 Predicted N6-adenine-s 88.0 3 6.6E-05 41.4 9.0 44 231-274 257-306 (381)
218 KOG3191 Predicted N6-DNA-methy 87.5 1.3 2.8E-05 40.4 5.5 38 204-242 44-82 (209)
219 PLN02668 indole-3-acetate carb 87.2 0.83 1.8E-05 45.3 4.6 24 258-282 153-176 (386)
220 PF05971 Methyltransf_10: Prot 86.9 0.75 1.6E-05 44.2 4.0 89 185-274 81-184 (299)
221 KOG2187 tRNA uracil-5-methyltr 86.3 0.79 1.7E-05 47.1 4.0 80 170-256 350-438 (534)
222 KOG3987 Uncharacterized conser 86.1 0.69 1.5E-05 43.1 3.1 92 175-277 84-179 (288)
223 PF03602 Cons_hypoth95: Conser 84.3 2 4.4E-05 37.9 5.2 100 169-273 9-120 (183)
224 PRK10742 putative methyltransf 84.0 4 8.6E-05 38.4 7.2 38 191-228 76-113 (250)
225 PF08123 DOT1: Histone methyla 83.8 1.6 3.5E-05 39.4 4.4 27 190-218 31-57 (205)
226 PF04816 DUF633: Family of unk 81.3 2.6 5.6E-05 38.1 4.7 68 207-276 1-75 (205)
227 KOG3201 Uncharacterized conser 80.9 0.76 1.6E-05 41.3 1.1 100 168-277 4-113 (201)
228 PF07757 AdoMet_MTase: Predict 80.8 2.5 5.5E-05 35.2 4.1 30 204-236 59-88 (112)
229 PF07091 FmrO: Ribosomal RNA m 80.5 2.6 5.6E-05 39.7 4.5 68 203-272 105-176 (251)
230 COG3129 Predicted SAM-dependen 78.3 2.4 5.2E-05 40.1 3.6 71 173-245 43-119 (292)
231 PF04445 SAM_MT: Putative SAM- 78.3 4.6 0.0001 37.6 5.4 82 191-275 63-159 (234)
232 PRK00536 speE spermidine synth 76.5 4.6 9.9E-05 38.0 5.0 56 188-246 57-112 (262)
233 PF01564 Spermine_synth: Sperm 76.2 2.3 4.9E-05 39.2 2.9 87 187-274 60-157 (246)
234 COG1189 Predicted rRNA methyla 75.1 13 0.00027 35.0 7.4 86 189-278 66-155 (245)
235 PF11968 DUF3321: Putative met 71.8 6.9 0.00015 36.2 4.8 59 205-277 53-114 (219)
236 COG0742 N6-adenine-specific me 71.6 21 0.00045 32.3 7.7 100 169-273 10-120 (187)
237 COG0293 FtsJ 23S rRNA methylas 71.1 6.3 0.00014 36.0 4.4 50 186-237 29-84 (205)
238 cd00315 Cyt_C5_DNA_methylase C 68.1 11 0.00023 35.1 5.4 66 206-274 2-69 (275)
239 TIGR00006 S-adenosyl-methyltra 66.3 13 0.00028 35.8 5.6 55 190-247 9-63 (305)
240 COG2521 Predicted archaeal met 66.2 3.9 8.4E-05 38.8 2.0 82 186-272 117-210 (287)
241 COG2520 Predicted methyltransf 63.3 22 0.00047 34.9 6.6 91 180-276 169-265 (341)
242 PF13334 DUF4094: Domain of un 62.3 4.9 0.00011 32.4 1.7 19 19-37 4-22 (95)
243 COG2384 Predicted SAM-dependen 60.1 33 0.00071 32.0 6.8 82 189-276 6-94 (226)
244 KOG3115 Methyltransferase-like 59.1 8.9 0.00019 35.7 2.9 22 206-227 63-84 (249)
245 KOG2651 rRNA adenine N-6-methy 58.7 14 0.0003 37.3 4.4 45 189-233 137-184 (476)
246 COG4262 Predicted spermidine s 57.0 17 0.00037 36.7 4.7 74 170-245 255-330 (508)
247 PF01189 Nol1_Nop2_Fmu: NOL1/N 56.0 11 0.00025 35.3 3.2 75 197-273 81-162 (283)
248 KOG4589 Cell division protein 53.4 12 0.00025 34.6 2.7 20 205-224 71-90 (232)
249 PF07629 DUF1590: Protein of u 50.8 9.1 0.0002 24.8 1.1 22 113-134 4-25 (32)
250 KOG1501 Arginine N-methyltrans 49.4 35 0.00075 35.3 5.5 57 187-245 46-106 (636)
251 COG3897 Predicted methyltransf 49.2 43 0.00093 31.0 5.6 66 205-277 81-152 (218)
252 COG4076 Predicted RNA methylas 45.9 17 0.00038 33.6 2.6 64 205-275 34-104 (252)
253 COG1064 AdhP Zn-dependent alco 45.8 27 0.00059 34.2 4.1 71 199-274 164-236 (339)
254 COG0286 HsdM Type I restrictio 45.8 68 0.0015 32.7 7.1 87 187-276 172-273 (489)
255 COG1092 Predicted SAM-dependen 44.9 20 0.00043 35.8 3.1 67 205-273 219-296 (393)
256 KOG2920 Predicted methyltransf 40.8 17 0.00036 34.9 1.8 20 205-224 118-137 (282)
257 COG0144 Sun tRNA and rRNA cyto 40.5 1.1E+02 0.0024 29.7 7.4 77 195-273 150-235 (355)
258 PRK11524 putative methyltransf 40.2 70 0.0015 29.8 5.8 38 205-247 210-249 (284)
259 PF06072 Herpes_US9: Alphaherp 38.5 33 0.00072 25.7 2.6 18 16-33 38-55 (60)
260 PF03059 NAS: Nicotianamine sy 37.1 49 0.0011 31.5 4.3 73 203-275 120-200 (276)
261 KOG1663 O-methyltransferase [S 36.6 1.2E+02 0.0027 28.4 6.7 16 205-220 75-90 (237)
262 PF07101 DUF1363: Protein of u 35.8 14 0.00031 30.5 0.4 11 207-217 6-16 (124)
263 PF02879 PGM_PMM_II: Phosphogl 34.4 60 0.0013 25.2 3.8 43 187-229 1-49 (104)
264 PRK13699 putative methylase; P 34.3 1.3E+02 0.0028 27.3 6.4 38 205-247 165-204 (227)
265 KOG2793 Putative N2,N2-dimethy 34.2 1.2E+02 0.0027 28.4 6.4 13 204-216 87-99 (248)
266 PRK10299 PhoPQ regulatory prot 33.9 45 0.00098 23.8 2.6 23 10-32 2-24 (47)
267 COG3346 Uncharacterized conser 33.3 45 0.00098 31.5 3.3 28 9-36 9-36 (252)
268 PF01795 Methyltransf_5: MraW 33.1 67 0.0015 31.1 4.6 55 190-247 9-63 (310)
269 PF09451 ATG27: Autophagy-rela 32.2 45 0.00098 31.1 3.2 24 15-38 204-228 (268)
270 PLN03193 beta-1,3-galactosyltr 31.5 42 0.0009 33.8 2.9 29 10-38 11-39 (408)
271 PF12147 Methyltransf_20: Puta 30.3 87 0.0019 30.5 4.8 113 132-257 70-196 (311)
272 PF01555 N6_N4_Mtase: DNA meth 29.1 1.7E+02 0.0037 24.8 6.0 37 205-246 193-231 (231)
273 PHA01634 hypothetical protein 28.6 83 0.0018 27.5 3.9 40 205-246 30-69 (156)
274 PF04672 Methyltransf_19: S-ad 28.6 36 0.00079 32.3 1.9 26 189-215 55-80 (267)
275 PF01234 NNMT_PNMT_TEMT: NNMT/ 28.3 41 0.00089 31.6 2.2 28 190-217 43-70 (256)
276 PF11599 AviRa: RRNA methyltra 28.0 1.7E+02 0.0037 27.6 6.1 67 176-245 25-94 (246)
277 PF02636 Methyltransf_28: Puta 27.8 80 0.0017 28.7 3.9 20 204-223 19-38 (252)
278 PF02005 TRM: N2,N2-dimethylgu 27.8 90 0.002 30.8 4.6 105 168-272 7-126 (377)
279 PF01269 Fibrillarin: Fibrilla 27.7 91 0.002 29.1 4.3 72 197-274 69-150 (229)
280 KOG2912 Predicted DNA methylas 27.6 53 0.0012 32.6 2.9 37 188-224 84-123 (419)
281 KOG2539 Mitochondrial/chloropl 27.5 40 0.00087 34.7 2.1 76 203-279 200-286 (491)
282 cd08283 FDH_like_1 Glutathione 26.2 1E+02 0.0022 29.5 4.5 41 205-247 186-228 (386)
283 KOG1709 Guanidinoacetate methy 26.1 1.4E+02 0.003 28.4 5.1 82 187-273 88-175 (271)
284 COG0416 PlsX Fatty acid/phosph 25.4 1.1E+02 0.0025 30.1 4.7 79 195-275 130-230 (338)
285 COG1565 Uncharacterized conser 24.9 55 0.0012 32.6 2.4 72 168-241 44-122 (370)
286 KOG2730 Methylase [General fun 24.2 1.3E+02 0.0028 28.6 4.6 68 204-274 95-172 (263)
287 COG0275 Predicted S-adenosylme 24.2 1.6E+02 0.0034 28.8 5.3 56 190-247 12-67 (314)
288 KOG4058 Uncharacterized conser 24.0 65 0.0014 28.9 2.5 33 190-224 61-93 (199)
289 COG0287 TyrA Prephenate dehydr 23.2 1.6E+02 0.0036 27.8 5.2 45 205-250 4-50 (279)
290 TIGR00853 pts-lac PTS system, 23.1 93 0.002 24.6 3.0 53 206-274 5-57 (95)
291 TIGR03728 glyco_access_1 glyco 23.0 1.2E+02 0.0027 28.9 4.3 74 166-239 137-222 (265)
292 cd05188 MDR Medium chain reduc 22.8 2.5E+02 0.0055 24.1 6.0 42 205-249 136-179 (271)
293 PF07942 N2227: N2227-like pro 22.8 1.4E+02 0.003 28.4 4.6 48 190-240 41-90 (270)
294 PF05206 TRM13: Methyltransfer 22.7 1.1E+02 0.0023 28.8 3.8 21 204-224 19-39 (259)
295 cd08245 CAD Cinnamyl alcohol d 22.5 2.4E+02 0.0052 25.6 6.1 64 205-274 164-232 (330)
296 PRK10310 PTS system galactitol 22.5 84 0.0018 24.7 2.7 9 211-219 8-16 (94)
297 KOG1122 tRNA and rRNA cytosine 21.9 3.2E+02 0.0069 28.1 7.1 81 190-275 225-324 (460)
298 PF03514 GRAS: GRAS domain fam 21.1 3.5E+02 0.0076 26.5 7.2 62 192-255 101-180 (374)
299 COG0373 HemA Glutamyl-tRNA red 21.1 1.6E+02 0.0034 29.9 4.8 66 205-275 179-246 (414)
300 PF12273 RCR: Chitin synthesis 20.6 88 0.0019 25.9 2.5 9 27-35 15-23 (130)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=6.9e-71 Score=541.62 Aligned_cols=193 Identities=69% Similarity=1.310 Sum_probs=189.4
Q ss_pred CccccccchhhhcC--CcccchhhccCCCCCCCccccccCCCCCCCCCCCCCCCCceeeecccCCchhhhhhhhcCceee
Q 038698 91 DYTPCQEQDRAMKF--PRENMTYRERHCPPEDEKLHCLIPAPKGYMTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQF 168 (283)
Q Consensus 91 ~y~pc~d~~~~~~~--~~~~~~~~eRhCp~~~~~~~Clv~~P~~Y~~P~~wP~sr~~~W~~n~p~~~L~~~k~~q~w~~~ 168 (283)
|||||+|+.+++++ ++++++|||||||+.+++++||||+|+||+.|||||+|||+|||+||||++|+++|+.||||++
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeCCCCCCCCCchhHHHHHHHhhCCC--CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH
Q 038698 169 QGNVFKFPGGGTMFPQGADAYIDELASVIPI--KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE 246 (283)
Q Consensus 169 ~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~--~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e 246 (283)
+||+|+||||||+|++||++|||+|.++++. .+|.+|++||||||+|+||++|++++|++|++++.|.+++|+|+|+|
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999998 77889999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeccccCCCCCCCceeeeeecccccccccC
Q 038698 247 RGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWTSN 283 (283)
Q Consensus 247 rg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W~~~ 283 (283)
||+|+++++++++|||||+++||||||++|+|+|+++
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~ 197 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPN 197 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhc
Confidence 9999999999999999999999999999999999974
No 2
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.30 E-value=5.7e-12 Score=94.52 Aligned_cols=71 Identities=28% Similarity=0.348 Sum_probs=56.4
Q ss_pred eecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC--CeEEEeccccCCCCCCCceeeeeeccccccc
Q 038698 208 LDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV--PAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW 280 (283)
Q Consensus 208 LDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~--~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W 280 (283)
||+|||+|.++..|+++ ...++.+.|.++++++.++++.. ...+..++.+.|||++++||+|+|..++-.+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec
Confidence 89999999999999998 23467889999999999988743 2347778999999999999999999998444
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.29 E-value=6.4e-12 Score=115.44 Aligned_cols=90 Identities=27% Similarity=0.300 Sum_probs=72.4
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCC-----eEEEeccccCC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVP-----AVIGVLGTIHL 261 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~-----a~~~v~da~rL 261 (283)
..+-+.+.+.+....| .+|||||||||-++..|++..- ...+.+.|+++.|+..|++|-.. ..+.++++++|
T Consensus 37 ~~Wr~~~i~~~~~~~g--~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 37 RLWRRALISLLGIKPG--DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred HHHHHHHHHhhCCCCC--CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence 3456666666665444 7999999999999999998643 45788999999999999987332 45677899999
Q ss_pred CCCCCceeeeeecccccc
Q 038698 262 PYPSRAFDMAQCSRCLIP 279 (283)
Q Consensus 262 PFpd~SFDlV~cs~~Li~ 279 (283)
||+|+|||+|.++-.|-+
T Consensus 114 Pf~D~sFD~vt~~fglrn 131 (238)
T COG2226 114 PFPDNSFDAVTISFGLRN 131 (238)
T ss_pred CCCCCccCEEEeeehhhc
Confidence 999999999999988743
No 4
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.26 E-value=1.1e-11 Score=111.54 Aligned_cols=87 Identities=21% Similarity=0.345 Sum_probs=68.5
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCcee
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFD 269 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFD 269 (283)
.+.|.+.++.. ...+|||+|||+|.++..|.+++. .+.++|+++++++.|.++.....+..++.+.+||++++||
T Consensus 31 a~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 31 ADALLAMLPQR--KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHHHhcCcc--CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence 44566666643 236899999999999999987643 5678899999999998875434455678899999999999
Q ss_pred eeeeccccccccc
Q 038698 270 MAQCSRCLIPWTS 282 (283)
Q Consensus 270 lV~cs~~Li~W~~ 282 (283)
+|+|+.++ +|..
T Consensus 106 ~V~s~~~l-~~~~ 117 (251)
T PRK10258 106 LAWSNLAV-QWCG 117 (251)
T ss_pred EEEECchh-hhcC
Confidence 99999887 6753
No 5
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.24 E-value=1.1e-11 Score=110.59 Aligned_cols=82 Identities=29% Similarity=0.404 Sum_probs=68.3
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhh-cCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCC-CCCCCc
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLK-RNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHL-PYPSRA 267 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~-r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rL-PFpd~S 267 (283)
.+.|.++++. | .+|||+|||.|.+.++|.+ +++. ..|++++++.+..+.++|++++-..++. .| -|+|+|
T Consensus 4 ~~~I~~~I~p--g--srVLDLGCGdG~LL~~L~~~k~v~---g~GvEid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~s 75 (193)
T PF07021_consen 4 LQIIAEWIEP--G--SRVLDLGCGDGELLAYLKDEKQVD---GYGVEIDPDNVAACVARGVSVIQGDLDE-GLADFPDQS 75 (193)
T ss_pred HHHHHHHcCC--C--CEEEecCCCchHHHHHHHHhcCCe---EEEEecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCC
Confidence 3578888876 5 6899999999999999998 5554 4678899999999999999987776654 45 499999
Q ss_pred eeeeeecccccc
Q 038698 268 FDMAQCSRCLIP 279 (283)
Q Consensus 268 FDlV~cs~~Li~ 279 (283)
||.|+.+++|..
T Consensus 76 FD~VIlsqtLQ~ 87 (193)
T PF07021_consen 76 FDYVILSQTLQA 87 (193)
T ss_pred ccEEehHhHHHh
Confidence 999999999854
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.20 E-value=3e-11 Score=110.08 Aligned_cols=87 Identities=22% Similarity=0.323 Sum_probs=56.8
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCCC
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPYP 264 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPFp 264 (283)
.+.+.+.+....| .+|||+|||||.++..|+++......+.+.|++++|++.|+++ +. ++.+.+++++.|||+
T Consensus 36 r~~~~~~~~~~~g--~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~ 113 (233)
T PF01209_consen 36 RRKLIKLLGLRPG--DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP 113 (233)
T ss_dssp -SHHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-
T ss_pred HHHHHhccCCCCC--CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC
Confidence 3345555554444 6999999999999998887633334678999999999999865 23 456778899999999
Q ss_pred CCceeeeeeccccc
Q 038698 265 SRAFDMAQCSRCLI 278 (283)
Q Consensus 265 d~SFDlV~cs~~Li 278 (283)
|++||+|+|+-.|-
T Consensus 114 d~sfD~v~~~fglr 127 (233)
T PF01209_consen 114 DNSFDAVTCSFGLR 127 (233)
T ss_dssp TT-EEEEEEES-GG
T ss_pred CCceeEEEHHhhHH
Confidence 99999999998774
No 7
>PRK05785 hypothetical protein; Provisional
Probab=99.17 E-value=4.6e-11 Score=107.77 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=58.4
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP 279 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~ 279 (283)
.+|||||||||.++..|+++. ...+.++|++++|++.|.++.. ..+++++.|||++++||+|+|+.+|-+
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~---~~~~d~~~lp~~d~sfD~v~~~~~l~~ 122 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADD---KVVGSFEALPFRDKSFDVVMSSFALHA 122 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccc---eEEechhhCCCCCCCEEEEEecChhhc
Confidence 589999999999999998873 2367889999999999987631 335688999999999999999998843
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.16 E-value=1.2e-10 Score=107.06 Aligned_cols=86 Identities=20% Similarity=0.093 Sum_probs=64.8
Q ss_pred HHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHcC-------C-CeEEEeccccCCC
Q 038698 192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALERG-------V-PAVIGVLGTIHLP 262 (283)
Q Consensus 192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~erg-------~-~a~~~v~da~rLP 262 (283)
.+.+.+....+ .+|||||||+|.++..|+++ +.. ..+.++|++++|++.|.++. . ...+..++++.||
T Consensus 64 ~~~~~~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 64 MAVSWSGAKMG--DRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHhCCCCC--CEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 34445554333 68999999999999888875 222 25678899999999887552 1 3456677899999
Q ss_pred CCCCceeeeeeccccccc
Q 038698 263 YPSRAFDMAQCSRCLIPW 280 (283)
Q Consensus 263 Fpd~SFDlV~cs~~Li~W 280 (283)
|++++||+|+|+.++-++
T Consensus 141 ~~~~sfD~V~~~~~l~~~ 158 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNV 158 (261)
T ss_pred CCCCCEeEEEEecccccC
Confidence 999999999999888544
No 9
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.13 E-value=1.9e-10 Score=105.74 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=63.9
Q ss_pred HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCC--eeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCce
Q 038698 191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNV--LTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAF 268 (283)
Q Consensus 191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v--~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SF 268 (283)
+.|.+.++. ...+|||+|||+|.++..|++... ....+.++|+++.+++.|.++.....+.++++..|||++++|
T Consensus 76 ~~l~~~l~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sf 152 (272)
T PRK11088 76 NLLAERLDE---KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSL 152 (272)
T ss_pred HHHHHhcCC---CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCce
Confidence 344444442 235799999999999999887521 123578899999999999887666667778999999999999
Q ss_pred eeeeeccc
Q 038698 269 DMAQCSRC 276 (283)
Q Consensus 269 DlV~cs~~ 276 (283)
|+|++..+
T Consensus 153 D~I~~~~~ 160 (272)
T PRK11088 153 DAIIRIYA 160 (272)
T ss_pred eEEEEecC
Confidence 99998643
No 10
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.12 E-value=1.3e-10 Score=103.56 Aligned_cols=89 Identities=16% Similarity=0.049 Sum_probs=65.7
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCce
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAF 268 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SF 268 (283)
+++.+.+.+.... ...+|||||||+|.++..|++.. ....+.++|+++++++.|+++.....+..+++.. ||++++|
T Consensus 30 ~~~~~~~~l~~~~-~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sf 106 (204)
T TIGR03587 30 KLAMFARALNRLP-KIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFF 106 (204)
T ss_pred HHHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCE
Confidence 4444444443211 23689999999999999998762 1236789999999999998754334455567666 9999999
Q ss_pred eeeeeccccccc
Q 038698 269 DMAQCSRCLIPW 280 (283)
Q Consensus 269 DlV~cs~~Li~W 280 (283)
|+|+|..+|.++
T Consensus 107 D~V~~~~vL~hl 118 (204)
T TIGR03587 107 DLVLTKGVLIHI 118 (204)
T ss_pred EEEEECChhhhC
Confidence 999999999765
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.09 E-value=1.9e-10 Score=104.39 Aligned_cols=85 Identities=24% Similarity=0.342 Sum_probs=66.1
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCcee
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFD 269 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFD 269 (283)
...+.+.++...+ .+|||||||+|.++..|+++.. ...+.++|+++.+++.|+++++. +..++++.++ ++++||
T Consensus 18 ~~~ll~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~--~~~~d~~~~~-~~~~fD 91 (255)
T PRK14103 18 FYDLLARVGAERA--RRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVD--ARTGDVRDWK-PKPDTD 91 (255)
T ss_pred HHHHHHhCCCCCC--CEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCc--EEEcChhhCC-CCCCce
Confidence 4566667765444 6899999999999999988732 23578899999999999887654 4456777775 678999
Q ss_pred eeeecccccccc
Q 038698 270 MAQCSRCLIPWT 281 (283)
Q Consensus 270 lV~cs~~Li~W~ 281 (283)
+|+|+.++ +|.
T Consensus 92 ~v~~~~~l-~~~ 102 (255)
T PRK14103 92 VVVSNAAL-QWV 102 (255)
T ss_pred EEEEehhh-hhC
Confidence 99999988 664
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.08 E-value=2.8e-10 Score=108.36 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=68.6
Q ss_pred hHHHHHHHhhCCCC---CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEecc
Q 038698 187 DAYIDELASVIPIK---DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLG 257 (283)
Q Consensus 187 ~~Yid~I~~~l~~~---~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~d 257 (283)
...++.+.+.+.+. .....+|||||||+|.++.+|+++. ...+.++|+++.|++.|.++ +. .+.+.++|
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 34466666666541 1223689999999999999998862 23567889999998877543 44 35677789
Q ss_pred ccCCCCCCCceeeeeeccccccc
Q 038698 258 TIHLPYPSRAFDMAQCSRCLIPW 280 (283)
Q Consensus 258 a~rLPFpd~SFDlV~cs~~Li~W 280 (283)
+..+||++++||+|+|..++.++
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~ 199 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHM 199 (340)
T ss_pred cccCCCCCCCccEEEECCchhcc
Confidence 99999999999999999888655
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.06 E-value=6.5e-10 Score=102.30 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=68.5
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC---CeEEEeccccCCCCCC
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV---PAVIGVLGTIHLPYPS 265 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~---~a~~~v~da~rLPFpd 265 (283)
..+.+.+.+.+..+ .+|||||||+|..+.+|++.. ...+.++|+++.+++.|.++.. ...+...+...+||++
T Consensus 40 ~~~~~l~~l~l~~~--~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~ 115 (263)
T PTZ00098 40 ATTKILSDIELNEN--SKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPE 115 (263)
T ss_pred HHHHHHHhCCCCCC--CEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCC
Confidence 35667777776544 689999999999998887642 2357788999999999887632 3456667888899999
Q ss_pred Cceeeeeeccccccc
Q 038698 266 RAFDMAQCSRCLIPW 280 (283)
Q Consensus 266 ~SFDlV~cs~~Li~W 280 (283)
++||+|++..++.++
T Consensus 116 ~~FD~V~s~~~l~h~ 130 (263)
T PTZ00098 116 NTFDMIYSRDAILHL 130 (263)
T ss_pred CCeEEEEEhhhHHhC
Confidence 999999998877555
No 14
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.00 E-value=1e-09 Score=95.83 Aligned_cols=76 Identities=24% Similarity=0.302 Sum_probs=60.8
Q ss_pred ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC-CeEEEeccccCCCCCCCceeeeeecccccccc
Q 038698 204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV-PAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT 281 (283)
Q Consensus 204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~-~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W~ 281 (283)
..+|||+|||+|.++..|++... ...+.+.|+++++++.+.++.. ...+...+...+|+++++||+|+|+.++ +|.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l-~~~ 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLAL-QWC 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhh-hhc
Confidence 36899999999999999988743 2346788999999988877643 3345567888999999999999999887 554
No 15
>PRK08317 hypothetical protein; Provisional
Probab=98.99 E-value=1.9e-09 Score=93.82 Aligned_cols=92 Identities=25% Similarity=0.328 Sum_probs=70.5
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP 262 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP 262 (283)
..|.+.+.+.+.+..+ .+|||+|||+|.++..++++......+.++|+++.+++.|+++ +....+...+...+|
T Consensus 5 ~~~~~~~~~~~~~~~~--~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 5 RRYRARTFELLAVQPG--DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC
Confidence 4567778788877544 6899999999999999887531223567889999998888765 223456667888899
Q ss_pred CCCCceeeeeeccccccc
Q 038698 263 YPSRAFDMAQCSRCLIPW 280 (283)
Q Consensus 263 Fpd~SFDlV~cs~~Li~W 280 (283)
+++++||+|++..++-.+
T Consensus 83 ~~~~~~D~v~~~~~~~~~ 100 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQHL 100 (241)
T ss_pred CCCCCceEEEEechhhcc
Confidence 999999999999888443
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.99 E-value=1.3e-09 Score=96.62 Aligned_cols=89 Identities=19% Similarity=0.311 Sum_probs=66.4
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHL 261 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rL 261 (283)
..+.+.+.+.+....+ .+|||+|||+|.++..|++..-....+.++|+++.+++.|.++ +. ...+..+++..+
T Consensus 31 ~~~~~~~l~~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 108 (231)
T TIGR02752 31 KKWRKDTMKRMNVQAG--TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL 108 (231)
T ss_pred HHHHHHHHHhcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC
Confidence 3445667777776545 6899999999999999887521223567889999998877654 33 244556688899
Q ss_pred CCCCCceeeeeecccc
Q 038698 262 PYPSRAFDMAQCSRCL 277 (283)
Q Consensus 262 PFpd~SFDlV~cs~~L 277 (283)
||++++||+|++..++
T Consensus 109 ~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 109 PFDDNSFDYVTIGFGL 124 (231)
T ss_pred CCCCCCccEEEEeccc
Confidence 9999999999998766
No 17
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.97 E-value=4.7e-10 Score=87.74 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=55.1
Q ss_pred EeecCCCccHHHHHHhhcC--CeeEeeccccChHHHHHHHHHcC----CCeEEEeccccCCCCCCCceeeeeeccc
Q 038698 207 ALDTGCGVASWGAYLLKRN--VLTMSFAPRDNHEAQVQFALERG----VPAVIGVLGTIHLPYPSRAFDMAQCSRC 276 (283)
Q Consensus 207 VLDVGCGtGsfaa~L~~r~--v~~~sla~~D~s~a~vq~A~erg----~~a~~~v~da~rLPFpd~SFDlV~cs~~ 276 (283)
|||+|||+|..+..|.+.. .....+.++|++++++..|.++. .++.+.++|...||+.+++||+|+|+.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999988763 11246789999999999988663 6778888999999999999999999655
No 18
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.97 E-value=1.3e-09 Score=98.47 Aligned_cols=88 Identities=20% Similarity=0.289 Sum_probs=66.1
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCce
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAF 268 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SF 268 (283)
..+.|.+.++...+ .+|||||||+|.++..|+++. ....+.++|+++.+++.|.++.....+...+...++ ++++|
T Consensus 19 ~~~~ll~~~~~~~~--~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~f 94 (258)
T PRK01683 19 PARDLLARVPLENP--RYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQAL 94 (258)
T ss_pred HHHHHHhhCCCcCC--CEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCc
Confidence 34555566665444 689999999999999998763 223577889999999999877544556666776665 56799
Q ss_pred eeeeecccccccc
Q 038698 269 DMAQCSRCLIPWT 281 (283)
Q Consensus 269 DlV~cs~~Li~W~ 281 (283)
|+|+|+.++ +|.
T Consensus 95 D~v~~~~~l-~~~ 106 (258)
T PRK01683 95 DLIFANASL-QWL 106 (258)
T ss_pred cEEEEccCh-hhC
Confidence 999999988 665
No 19
>PRK06202 hypothetical protein; Provisional
Probab=98.92 E-value=3.9e-09 Score=94.38 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=57.4
Q ss_pred ccEEeecCCCccHHHHHHhhc----CCeeEeeccccChHHHHHHHHHcC--CCeEEEeccccCCCCCCCceeeeeecccc
Q 038698 204 VRTALDTGCGVASWGAYLLKR----NVLTMSFAPRDNHEAQVQFALERG--VPAVIGVLGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 204 ~r~VLDVGCGtGsfaa~L~~r----~v~~~sla~~D~s~a~vq~A~erg--~~a~~~v~da~rLPFpd~SFDlV~cs~~L 277 (283)
..+|||+|||+|.++..|++. +. ...+.++|+++++++.|.++. .+..+.+.++..+|+++++||+|+|+.+|
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 468999999999988887652 22 236789999999999998762 12334455677889999999999999988
Q ss_pred c
Q 038698 278 I 278 (283)
Q Consensus 278 i 278 (283)
-
T Consensus 140 h 140 (232)
T PRK06202 140 H 140 (232)
T ss_pred e
Confidence 3
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.92 E-value=2.3e-09 Score=89.68 Aligned_cols=72 Identities=24% Similarity=0.281 Sum_probs=57.8
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC--CCCCceeeeeecccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP--YPSRAFDMAQCSRCL 277 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP--Fpd~SFDlV~cs~~L 277 (283)
.+|||+|||+|.++..|+++-.....+.++|+++++++.|.++ +.+ ..+.+.++..++ |+ +.||+|++..++
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l 83 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVL 83 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTG
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCch
Confidence 6899999999999999995311233578999999999998763 554 667778888888 88 999999999887
No 21
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.91 E-value=2e-09 Score=88.53 Aligned_cols=85 Identities=26% Similarity=0.423 Sum_probs=61.7
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSR 266 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~ 266 (283)
..+.+.|.++++.. ....+|||||||+|.++..|.+++. .+.++|+++.++.. ........+....+++++
T Consensus 7 ~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 77 (161)
T PF13489_consen 7 RAYADLLERLLPRL-KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDG 77 (161)
T ss_dssp HCHHHHHHHHHTCT-TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSS
T ss_pred HHHHHHHHHHhccc-CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhcccc
Confidence 34566666666521 1236999999999999999988755 57788999888766 222333334557788999
Q ss_pred ceeeeeecccccccc
Q 038698 267 AFDMAQCSRCLIPWT 281 (283)
Q Consensus 267 SFDlV~cs~~Li~W~ 281 (283)
+||+|+|..+| .|.
T Consensus 78 ~fD~i~~~~~l-~~~ 91 (161)
T PF13489_consen 78 SFDLIICNDVL-EHL 91 (161)
T ss_dssp SEEEEEEESSG-GGS
T ss_pred chhhHhhHHHH-hhc
Confidence 99999999888 443
No 22
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.91 E-value=9.5e-10 Score=101.26 Aligned_cols=120 Identities=22% Similarity=0.249 Sum_probs=78.9
Q ss_pred ecccCCchhhhh-hhhcCceeecCCeeeeCCCCCCCCCchhHHHHHHHhhCCC---CCCCccEEeecCCCccHHHHHHhh
Q 038698 148 YANVPHKSLTVE-KAVQNWVQFQGNVFKFPGGGTMFPQGADAYIDELASVIPI---KDGSVRTALDTGCGVASWGAYLLK 223 (283)
Q Consensus 148 ~~n~p~~~L~~~-k~~q~w~~~~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~---~~g~~r~VLDVGCGtGsfaa~L~~ 223 (283)
..|+++..++.. +..++|-..+|+.-.- ..+. ...++.|.+.+.. ..| .+|||||||.|.++.-|++
T Consensus 9 ~~~id~~e~~~F~~la~~wwd~~g~f~~L----H~~N---~~rl~~i~~~~~~~~~l~g--~~vLDvGCGgG~Lse~mAr 79 (243)
T COG2227 9 TQNVDYKELDKFEALASRWWDPEGEFKPL----HKIN---PLRLDYIREVARLRFDLPG--LRVLDVGCGGGILSEPLAR 79 (243)
T ss_pred cccCCHHHHHHHHHHHhhhcCCCCceeee----eeec---cchhhhhhhhhhcccCCCC--CeEEEecCCccHhhHHHHH
Confidence 557777766533 3456776655441110 0011 1122233344331 123 5899999999999999999
Q ss_pred cCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698 224 RNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP 279 (283)
Q Consensus 224 r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~ 279 (283)
.+. .+.++|+++..|+.|+.+ |+.+.+....++.|-...++||+|+|..+|.|
T Consensus 80 ~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 80 LGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 873 567899999999888643 55544555667788777799999999999865
No 23
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.89 E-value=4.4e-09 Score=91.74 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=58.8
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccC-C-CCCCCc
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIH-L-PYPSRA 267 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~r-L-PFpd~S 267 (283)
++.|.+.++. + .+|||||||+|.++..|+++.. ..+.++|+++++++.|.++++.... +++.. + ++++++
T Consensus 4 ~~~i~~~i~~--~--~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~--~d~~~~l~~~~~~s 75 (194)
T TIGR02081 4 LESILNLIPP--G--SRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQ--GDLDEGLEAFPDKS 75 (194)
T ss_pred HHHHHHhcCC--C--CEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEE--EEhhhcccccCCCC
Confidence 3455566642 3 4899999999999988876421 2346789999999988877765443 35433 5 589999
Q ss_pred eeeeeecccc
Q 038698 268 FDMAQCSRCL 277 (283)
Q Consensus 268 FDlV~cs~~L 277 (283)
||+|+|+.++
T Consensus 76 fD~Vi~~~~l 85 (194)
T TIGR02081 76 FDYVILSQTL 85 (194)
T ss_pred cCEEEEhhHh
Confidence 9999999987
No 24
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.87 E-value=3.2e-09 Score=96.49 Aligned_cols=71 Identities=17% Similarity=0.070 Sum_probs=56.8
Q ss_pred ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCC-CCCCCceeeeeeccc
Q 038698 204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHL-PYPSRAFDMAQCSRC 276 (283)
Q Consensus 204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rL-PFpd~SFDlV~cs~~ 276 (283)
..+|||+|||+|.++..|++++. .+.++|+++.+++.|.++ +. .+.+..++++.+ ++++++||+|+|+.+
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 36999999999999999999853 467889999999888754 33 234555677777 478899999999998
Q ss_pred c
Q 038698 277 L 277 (283)
Q Consensus 277 L 277 (283)
+
T Consensus 122 l 122 (255)
T PRK11036 122 L 122 (255)
T ss_pred H
Confidence 7
No 25
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.86 E-value=7.4e-09 Score=101.83 Aligned_cols=86 Identities=24% Similarity=0.442 Sum_probs=65.5
Q ss_pred HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CC--CeEEEeccccCCCCCCC
Q 038698 191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GV--PAVIGVLGTIHLPYPSR 266 (283)
Q Consensus 191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~--~a~~~v~da~rLPFpd~ 266 (283)
+.+.+.+.+..+ .+|||||||+|.++..|+++. ...+.++|++++++..|.++ +. ...+..++...+||+++
T Consensus 256 e~l~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~ 331 (475)
T PLN02336 256 KEFVDKLDLKPG--QKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDN 331 (475)
T ss_pred HHHHHhcCCCCC--CEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCC
Confidence 345555554333 689999999999998888752 23577899999999888764 22 34566778889999999
Q ss_pred ceeeeeeccccccc
Q 038698 267 AFDMAQCSRCLIPW 280 (283)
Q Consensus 267 SFDlV~cs~~Li~W 280 (283)
+||+|+|..++.++
T Consensus 332 ~fD~I~s~~~l~h~ 345 (475)
T PLN02336 332 SFDVIYSRDTILHI 345 (475)
T ss_pred CEEEEEECCccccc
Confidence 99999999888554
No 26
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.85 E-value=7.6e-09 Score=95.60 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=71.3
Q ss_pred CCCCCCCchhHHHHHHHhhCC----CC-CCCccEEeecCCCcc----HHHHHHhhcCC----eeEeeccccChHHHHHHH
Q 038698 178 GGTMFPQGADAYIDELASVIP----IK-DGSVRTALDTGCGVA----SWGAYLLKRNV----LTMSFAPRDNHEAQVQFA 244 (283)
Q Consensus 178 ggt~F~~ga~~Yid~I~~~l~----~~-~g~~r~VLDVGCGtG----sfaa~L~~r~v----~~~sla~~D~s~a~vq~A 244 (283)
+-|.|.+...++-.....++| .. .+...+|||+||||| +++..|++... ....+.+.|+++.+++.|
T Consensus 69 ~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~A 148 (264)
T smart00138 69 NETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKA 148 (264)
T ss_pred CCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHH
Confidence 357777777666332222333 11 123468999999999 46666666422 135788999999999998
Q ss_pred HHc--------CC------------------------CeEEEeccccCCCCCCCceeeeeecccccccc
Q 038698 245 LER--------GV------------------------PAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT 281 (283)
Q Consensus 245 ~er--------g~------------------------~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W~ 281 (283)
++. ++ .+.+.+.+...+|+++++||+|+|..+|+.+.
T Consensus 149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~ 217 (264)
T smart00138 149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD 217 (264)
T ss_pred HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC
Confidence 753 11 23466778888899999999999999987763
No 27
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.84 E-value=7.9e-09 Score=90.99 Aligned_cols=88 Identities=30% Similarity=0.362 Sum_probs=62.2
Q ss_pred HHHHHHHhhCCCC-CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC
Q 038698 188 AYIDELASVIPIK-DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH 260 (283)
Q Consensus 188 ~Yid~I~~~l~~~-~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r 260 (283)
...+.+.++++.. .....+|||||||+|.++..|++++. .+.++|+++.+++.|.++ +. ...+..++
T Consensus 47 ~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d--- 120 (230)
T PRK07580 47 RMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGD--- 120 (230)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---
Confidence 3344555555430 11236899999999999999988754 367889999999988765 22 23344334
Q ss_pred CCCCCCceeeeeecccccccc
Q 038698 261 LPYPSRAFDMAQCSRCLIPWT 281 (283)
Q Consensus 261 LPFpd~SFDlV~cs~~Li~W~ 281 (283)
+++.+++||+|+|..++.+|.
T Consensus 121 ~~~~~~~fD~v~~~~~l~~~~ 141 (230)
T PRK07580 121 LESLLGRFDTVVCLDVLIHYP 141 (230)
T ss_pred chhccCCcCEEEEcchhhcCC
Confidence 677789999999999987654
No 28
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.82 E-value=1.1e-08 Score=97.26 Aligned_cols=86 Identities=23% Similarity=0.220 Sum_probs=62.2
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHH--HHc----CCCeEEEeccccCCCC
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFA--LER----GVPAVIGVLGTIHLPY 263 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A--~er----g~~a~~~v~da~rLPF 263 (283)
.+.|...++...| ++|||||||+|.++.+|++.+.. .+.++|.++.++..+ .++ ..++.+..++++.+|+
T Consensus 111 ~~~l~~~l~~l~g--~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 111 WDRVLPHLSPLKG--RTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322)
T ss_pred HHHHHHhhCCCCC--CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence 4456666654344 69999999999999999987543 356788888776432 222 1235566678899999
Q ss_pred CCCceeeeeeccccccc
Q 038698 264 PSRAFDMAQCSRCLIPW 280 (283)
Q Consensus 264 pd~SFDlV~cs~~Li~W 280 (283)
+++||+|+|..++-++
T Consensus 187 -~~~FD~V~s~~vl~H~ 202 (322)
T PRK15068 187 -LKAFDTVFSMGVLYHR 202 (322)
T ss_pred -cCCcCEEEECChhhcc
Confidence 8999999999888543
No 29
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.82 E-value=1.2e-08 Score=89.75 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=59.6
Q ss_pred HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCC
Q 038698 192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSR 266 (283)
Q Consensus 192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~ 266 (283)
.+.+.++...+ .+|||+|||+|.++.+|++++. .+.++|+++.+++.|+++ ++. ..+.+++...++++ +
T Consensus 21 ~l~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 94 (197)
T PRK11207 21 EVLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-G 94 (197)
T ss_pred HHHHhcccCCC--CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-C
Confidence 45556654333 5899999999999999999853 567789999888876532 443 34555677777875 6
Q ss_pred ceeeeeecccc
Q 038698 267 AFDMAQCSRCL 277 (283)
Q Consensus 267 SFDlV~cs~~L 277 (283)
+||+|+|+.++
T Consensus 95 ~fD~I~~~~~~ 105 (197)
T PRK11207 95 EYDFILSTVVL 105 (197)
T ss_pred CcCEEEEecch
Confidence 79999999887
No 30
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.80 E-value=6.6e-09 Score=95.34 Aligned_cols=87 Identities=20% Similarity=0.349 Sum_probs=68.8
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCC--eEEEeccccCCCCCCCc
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVP--AVIGVLGTIHLPYPSRA 267 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~--a~~~v~da~rLPFpd~S 267 (283)
.+.-.+++.+.++..+-|||||||+|.-+..|.+.+. -..|+|+|+.|+..|.++-+. .++..|+ +-|||..++
T Consensus 37 ~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG-~GlpfrpGt 112 (270)
T KOG1541|consen 37 AERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMG-EGLPFRPGT 112 (270)
T ss_pred HHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecC-CCCCCCCCc
Confidence 3344566666554568999999999999998888763 357899999999999976543 4455555 899999999
Q ss_pred eeeeeecccccccc
Q 038698 268 FDMAQCSRCLIPWT 281 (283)
Q Consensus 268 FDlV~cs~~Li~W~ 281 (283)
||-|++-.++ +|.
T Consensus 113 FDg~ISISAv-QWL 125 (270)
T KOG1541|consen 113 FDGVISISAV-QWL 125 (270)
T ss_pred cceEEEeeee-eee
Confidence 9999999988 885
No 31
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.80 E-value=9.7e-09 Score=90.92 Aligned_cols=88 Identities=28% Similarity=0.358 Sum_probs=64.6
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH 260 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r 260 (283)
+...+.+.+.++.......+|||+|||+|.++..|++++. .+.++|+++++++.|+++ +. ...+.+.+...
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 39 AAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 4445566666652112247899999999999999988743 567889999999888765 22 34566677777
Q ss_pred CCCCCCceeeeeeccccccc
Q 038698 261 LPYPSRAFDMAQCSRCLIPW 280 (283)
Q Consensus 261 LPFpd~SFDlV~cs~~Li~W 280 (283)
++ ++||+|++..++.++
T Consensus 116 ~~---~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHY 132 (219)
T ss_pred CC---CCcCEEEEhhHHHhC
Confidence 76 899999999887655
No 32
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.79 E-value=1.3e-08 Score=96.97 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=60.4
Q ss_pred HHHHHhhCCCC-CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC----------CeEEEeccc
Q 038698 190 IDELASVIPIK-DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV----------PAVIGVLGT 258 (283)
Q Consensus 190 id~I~~~l~~~-~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~----------~a~~~v~da 258 (283)
++.+.+++... +....+|||||||+|.++..|++++. .+.++|+++.+++.|+++.. ...+.+.+.
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 45555555432 11226899999999999999998753 56788999999998876521 223444454
Q ss_pred cCCCCCCCceeeeeecccccccc
Q 038698 259 IHLPYPSRAFDMAQCSRCLIPWT 281 (283)
Q Consensus 259 ~rLPFpd~SFDlV~cs~~Li~W~ 281 (283)
.. .+++||+|+|..++.++.
T Consensus 207 ~~---l~~~fD~Vv~~~vL~H~p 226 (315)
T PLN02585 207 ES---LSGKYDTVTCLDVLIHYP 226 (315)
T ss_pred hh---cCCCcCEEEEcCEEEecC
Confidence 33 368999999999987653
No 33
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.78 E-value=5.8e-09 Score=99.52 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=59.3
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCCCCCceeeeeeccccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPYPSRAFDMAQCSRCLI 278 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPFpd~SFDlV~cs~~Li 278 (283)
.+|||||||+|.++..|++.+. .+.++|.++++++.|+++ +. ...+..++++.||+++++||+|+|..+|-
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 5899999999999999987643 567889999999988754 11 34466678899999999999999999885
Q ss_pred cc
Q 038698 279 PW 280 (283)
Q Consensus 279 ~W 280 (283)
+.
T Consensus 210 Hv 211 (322)
T PLN02396 210 HV 211 (322)
T ss_pred hc
Confidence 44
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.78 E-value=1.4e-08 Score=89.34 Aligned_cols=83 Identities=14% Similarity=0.231 Sum_probs=60.4
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCCeEEEeccccCCCCCC
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVPAVIGVLGTIHLPYPS 265 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~a~~~v~da~rLPFpd 265 (283)
...|.+.+....+ .+|||+|||+|.++.+|++++. .+.++|+++.+++.+.+ .+++....+++...++++
T Consensus 19 ~~~l~~~~~~~~~--~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~- 92 (195)
T TIGR00477 19 HSAVREAVKTVAP--CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN- 92 (195)
T ss_pred hHHHHHHhccCCC--CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-
Confidence 3355566654333 5899999999999999998753 56788999988876643 355545555566667775
Q ss_pred Cceeeeeeccccc
Q 038698 266 RAFDMAQCSRCLI 278 (283)
Q Consensus 266 ~SFDlV~cs~~Li 278 (283)
++||+|+|+.++.
T Consensus 93 ~~fD~I~~~~~~~ 105 (195)
T TIGR00477 93 EDYDFIFSTVVFM 105 (195)
T ss_pred CCCCEEEEecccc
Confidence 6899999998773
No 35
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.70 E-value=8e-08 Score=85.13 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=61.7
Q ss_pred HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCC
Q 038698 188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHL 261 (283)
Q Consensus 188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rL 261 (283)
...+.+.+.+....+ .+|||||||+|++++.|++.--....+.++|+++++++.|.++ +.. ..+..++....
T Consensus 59 ~~~~~~~~~l~~~~~--~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 59 HMVAMMCELIEPRPG--MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHHhcCCCCC--CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 345666677766544 6899999999999988877421112467788888888777643 442 44555676665
Q ss_pred CCCCCceeeeeecccc
Q 038698 262 PYPSRAFDMAQCSRCL 277 (283)
Q Consensus 262 PFpd~SFDlV~cs~~L 277 (283)
+..+++||+|++..++
T Consensus 137 ~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 137 LEKHAPFDAIIVTAAA 152 (205)
T ss_pred CccCCCccEEEEccCc
Confidence 5567899999998765
No 36
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.68 E-value=6.2e-08 Score=75.84 Aligned_cols=67 Identities=21% Similarity=0.293 Sum_probs=50.5
Q ss_pred cEEeecCCCccHHHHHHhh--cCCeeEeeccccChHHHHHHHHHcC------CCeEEEeccc-cCCCCCCCceeeeeecc
Q 038698 205 RTALDTGCGVASWGAYLLK--RNVLTMSFAPRDNHEAQVQFALERG------VPAVIGVLGT-IHLPYPSRAFDMAQCSR 275 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~--r~v~~~sla~~D~s~a~vq~A~erg------~~a~~~v~da-~rLPFpd~SFDlV~cs~ 275 (283)
.+|||||||+|.++..|++ .+. .+.++|+++++++.|+++- ....+...+. ....+ .+.||+|++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECC
Confidence 5899999999999999998 443 4678899999988887542 2455666676 33333 34599999998
No 37
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.68 E-value=6.5e-08 Score=92.14 Aligned_cols=86 Identities=23% Similarity=0.204 Sum_probs=60.4
Q ss_pred HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH--Hc--C--CCeEEEeccccCCCCC
Q 038698 191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL--ER--G--VPAVIGVLGTIHLPYP 264 (283)
Q Consensus 191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~--er--g--~~a~~~v~da~rLPFp 264 (283)
+.+...+....| ++|||||||+|.++..|+..+.. .+.++|.++.++..+. ++ + ..+.+..++.+.+|+.
T Consensus 111 ~~~l~~l~~~~g--~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~ 186 (314)
T TIGR00452 111 DRVLPHLSPLKG--RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL 186 (314)
T ss_pred HHHHHhcCCCCC--CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence 345555554344 69999999999999988887542 3577888887765432 12 1 2344556678889875
Q ss_pred CCceeeeeecccccccc
Q 038698 265 SRAFDMAQCSRCLIPWT 281 (283)
Q Consensus 265 d~SFDlV~cs~~Li~W~ 281 (283)
++||+|+|+.+|.++.
T Consensus 187 -~~FD~V~s~gvL~H~~ 202 (314)
T TIGR00452 187 -YAFDTVFSMGVLYHRK 202 (314)
T ss_pred -CCcCEEEEcchhhccC
Confidence 4899999999996653
No 38
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.66 E-value=4.2e-08 Score=91.52 Aligned_cols=96 Identities=24% Similarity=0.379 Sum_probs=61.1
Q ss_pred eCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CC
Q 038698 175 FPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GV 249 (283)
Q Consensus 175 Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~ 249 (283)
|+.+.......-...++.|.+.+.+++| .+|||||||-|.++.+++++ ++ .+.++.+|++|.+.|.++ |+
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~l~~G--~~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl 110 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLGLKPG--DRVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGL 110 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTS
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCC
Confidence 3444444433335568888899988877 69999999999999999998 55 456778899998887643 65
Q ss_pred C--eEEEeccccCCCCCCCceeeeeeccccc
Q 038698 250 P--AVIGVLGTIHLPYPSRAFDMAQCSRCLI 278 (283)
Q Consensus 250 ~--a~~~v~da~rLPFpd~SFDlV~cs~~Li 278 (283)
. +.+...|...++. +||.|++-.++-
T Consensus 111 ~~~v~v~~~D~~~~~~---~fD~IvSi~~~E 138 (273)
T PF02353_consen 111 EDRVEVRLQDYRDLPG---KFDRIVSIEMFE 138 (273)
T ss_dssp SSTEEEEES-GGG------S-SEEEEESEGG
T ss_pred CCceEEEEeeccccCC---CCCEEEEEechh
Confidence 3 4455567666655 999999987764
No 39
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.66 E-value=2.2e-08 Score=91.72 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=71.3
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCcee
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFD 269 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFD 269 (283)
...|...+++. ..++|.|+|||+|..+++|.+|=.. ..|.|+|.|.+|+..|++|.+.+.+..+|.+.. =|+..+|
T Consensus 19 a~dLla~Vp~~--~~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w-~p~~~~d 94 (257)
T COG4106 19 ARDLLARVPLE--RPRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQRLPDATFEEADLRTW-KPEQPTD 94 (257)
T ss_pred HHHHHhhCCcc--ccceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHhCCCCceecccHhhc-CCCCccc
Confidence 33566677763 4589999999999999999998433 357899999999999999988888877776554 2678999
Q ss_pred eeeeccccccccc
Q 038698 270 MAQCSRCLIPWTS 282 (283)
Q Consensus 270 lV~cs~~Li~W~~ 282 (283)
+++++.+| +|..
T Consensus 95 llfaNAvl-qWlp 106 (257)
T COG4106 95 LLFANAVL-QWLP 106 (257)
T ss_pred hhhhhhhh-hhcc
Confidence 99999999 8853
No 40
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.64 E-value=8.1e-08 Score=92.51 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=59.0
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC--CCeEEEeccccCCCCCCCceeeeeecccccccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG--VPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT 281 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg--~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W~ 281 (283)
.+|||||||+|.++..|+++. ....+.++|.++++++.|.++. ....+..++.+.+||++++||+|+++.++..|.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 689999999999988877642 1235678899999998887652 123455668899999999999999998886553
No 41
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.63 E-value=6.9e-08 Score=89.66 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=53.9
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCCeEEEeccccCCCCCCCceeeeeecccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVPAVIGVLGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~a~~~v~da~rLPFpd~SFDlV~cs~~L 277 (283)
.+|||+|||+|.++.+|++++. .+.++|.++.+++.+.+ .++...+...+....++ +++||+|+|..++
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl 194 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVL 194 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchh
Confidence 4899999999999999998753 56788999988887653 35555555556666666 7899999999876
No 42
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.63 E-value=1.5e-07 Score=82.42 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=64.4
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC------CCeEEEeccccCCC
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG------VPAVIGVLGTIHLP 262 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg------~~a~~~v~da~rLP 262 (283)
+...+.+.+....+ .+|||+|||+|.++..|++.......+.++|+++.+++.|.++- .+..+...+...++
T Consensus 39 ~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 116 (239)
T PRK00216 39 WRRKTIKWLGVRPG--DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP 116 (239)
T ss_pred HHHHHHHHhCCCCC--CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC
Confidence 34455555554333 68999999999999988876421235678899998888877651 23456667888889
Q ss_pred CCCCceeeeeecccccc
Q 038698 263 YPSRAFDMAQCSRCLIP 279 (283)
Q Consensus 263 Fpd~SFDlV~cs~~Li~ 279 (283)
+++++||+|+++.++-.
T Consensus 117 ~~~~~~D~I~~~~~l~~ 133 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRN 133 (239)
T ss_pred CCCCCccEEEEeccccc
Confidence 99999999999887743
No 43
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.63 E-value=8.4e-08 Score=87.60 Aligned_cols=73 Identities=18% Similarity=0.064 Sum_probs=55.2
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCCCCCceeeeeecccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPFpd~SFDlV~cs~~L 277 (283)
.+|||||||+|..+..+++.-.....+.++|.++++++.|+++ +. ...+..++.+.+||++++||+|++..++
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI 156 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence 6999999999987766555311112467789999998888764 44 3445567889999999999999998776
No 44
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.62 E-value=6.1e-09 Score=96.09 Aligned_cols=84 Identities=26% Similarity=0.311 Sum_probs=64.2
Q ss_pred HHHhhCCC-CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEecccc-CCC-CCCCce
Q 038698 192 ELASVIPI-KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTI-HLP-YPSRAF 268 (283)
Q Consensus 192 ~I~~~l~~-~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~-rLP-Fpd~SF 268 (283)
.+.+||.. ..|..+++||+|||||.++..|..+ +-.+.|+|+|++|+..|.++|+--.+.++++. -|+ ..+..|
T Consensus 113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~ 189 (287)
T COG4976 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERF 189 (287)
T ss_pred HHHHHHHhccCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcc
Confidence 45556553 2355899999999999999999886 23578999999999999999875445555544 333 567899
Q ss_pred eeeeeccccc
Q 038698 269 DMAQCSRCLI 278 (283)
Q Consensus 269 DlV~cs~~Li 278 (283)
|+|.+..||.
T Consensus 190 DLi~AaDVl~ 199 (287)
T COG4976 190 DLIVAADVLP 199 (287)
T ss_pred cchhhhhHHH
Confidence 9999998873
No 45
>PRK06922 hypothetical protein; Provisional
Probab=98.61 E-value=9e-08 Score=98.98 Aligned_cols=75 Identities=16% Similarity=0.097 Sum_probs=58.9
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC--CCCCceeeeeeccccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP--YPSRAFDMAQCSRCLI 278 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP--Fpd~SFDlV~cs~~Li 278 (283)
.+|||||||+|.++..|+++. ....+.++|+++.+++.|.++ +.+..+..++...|| |++++||+|+++.++-
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 589999999999988887753 234678899999999888764 333445556888898 9999999999998774
Q ss_pred cc
Q 038698 279 PW 280 (283)
Q Consensus 279 ~W 280 (283)
.|
T Consensus 499 ~L 500 (677)
T PRK06922 499 EL 500 (677)
T ss_pred hh
Confidence 44
No 46
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.60 E-value=1.9e-07 Score=80.99 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=65.0
Q ss_pred HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC---CeEEEeccccCCCCC
Q 038698 188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV---PAVIGVLGTIHLPYP 264 (283)
Q Consensus 188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~---~a~~~v~da~rLPFp 264 (283)
.+.+.+.+.+.... ..+|||+|||+|.++..+++.......+.++|+++.++..+.++.. ...+...++..+|++
T Consensus 26 ~~~~~~~~~~~~~~--~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 26 LWRRRAVKLIGVFK--GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFE 103 (223)
T ss_pred HHHHHHHHHhccCC--CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCC
Confidence 34555666665433 3689999999999999988764322357788999988888876531 344556688889999
Q ss_pred CCceeeeeecccc
Q 038698 265 SRAFDMAQCSRCL 277 (283)
Q Consensus 265 d~SFDlV~cs~~L 277 (283)
+++||+|+++..+
T Consensus 104 ~~~~D~i~~~~~~ 116 (223)
T TIGR01934 104 DNSFDAVTIAFGL 116 (223)
T ss_pred CCcEEEEEEeeee
Confidence 9999999998766
No 47
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.58 E-value=2.3e-07 Score=82.82 Aligned_cols=89 Identities=11% Similarity=0.038 Sum_probs=64.0
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHL 261 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rL 261 (283)
......+.+.+.+..| .+|||||||+|++++.|++.--....+.++|+++++++.|+++ +. +..+..+++...
T Consensus 62 p~~~~~~~~~l~~~~g--~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 62 IHMVAIMCELLDLKEG--MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHHcCCCCc--CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 3345566677776555 6999999999999988887521122567788888888877653 44 345666777777
Q ss_pred CCCCCceeeeeecccc
Q 038698 262 PYPSRAFDMAQCSRCL 277 (283)
Q Consensus 262 PFpd~SFDlV~cs~~L 277 (283)
+++++.||+|++....
T Consensus 140 ~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 140 YEENAPYDRIYVTAAG 155 (212)
T ss_pred CCcCCCcCEEEECCCc
Confidence 7788999999987654
No 48
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.58 E-value=1.5e-07 Score=89.73 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=58.2
Q ss_pred HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCe-eEeeccccChHHHHHHHHHc-CCC--eEEEeccccCCCCCCC
Q 038698 191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVL-TMSFAPRDNHEAQVQFALER-GVP--AVIGVLGTIHLPYPSR 266 (283)
Q Consensus 191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~-~~sla~~D~s~a~vq~A~er-g~~--a~~~v~da~rLPFpd~ 266 (283)
++|...++...| ++|||||||.|+++-+|+.++.. ++.+.+....-.|-+++.+- |.. ....-++.+.||. .+
T Consensus 105 ~rl~p~l~~L~g--k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~ 181 (315)
T PF08003_consen 105 DRLLPHLPDLKG--KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LG 181 (315)
T ss_pred HHHHhhhCCcCC--CEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cC
Confidence 455666653345 79999999999999999998764 34444444444443343332 332 2222257899999 89
Q ss_pred ceeeeeecccccc
Q 038698 267 AFDMAQCSRCLIP 279 (283)
Q Consensus 267 SFDlV~cs~~Li~ 279 (283)
+||+|+|..+|-|
T Consensus 182 ~FDtVF~MGVLYH 194 (315)
T PF08003_consen 182 AFDTVFSMGVLYH 194 (315)
T ss_pred CcCEEEEeeehhc
Confidence 9999999999843
No 49
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.58 E-value=1.1e-07 Score=89.76 Aligned_cols=98 Identities=21% Similarity=0.278 Sum_probs=70.2
Q ss_pred eCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHH----cCC
Q 038698 175 FPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALE----RGV 249 (283)
Q Consensus 175 Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~e----rg~ 249 (283)
|+.+..+....-.+.++.+.+.+.+++| .+|||||||-|.++.+++++ +++ +.|+++|++|...|.+ +|.
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v~---V~GvTlS~~Q~~~~~~r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGVT---VVGVTLSEEQLAYAEKRIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCC--CEEEEeCCChhHHHHHHHHHcCCE---EEEeeCCHHHHHHHHHHHHHcCC
Confidence 4554444433335568999999999888 79999999999999999997 554 5678999999877655 365
Q ss_pred CeEEEeccccCCCCCCCceeeeeeccccc
Q 038698 250 PAVIGVLGTIHLPYPSRAFDMAQCSRCLI 278 (283)
Q Consensus 250 ~a~~~v~da~rLPFpd~SFDlV~cs~~Li 278 (283)
...+.+ -.+..+..++.||-|++..++-
T Consensus 121 ~~~v~v-~l~d~rd~~e~fDrIvSvgmfE 148 (283)
T COG2230 121 EDNVEV-RLQDYRDFEEPFDRIVSVGMFE 148 (283)
T ss_pred CcccEE-EeccccccccccceeeehhhHH
Confidence 522221 2345555666699999987763
No 50
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.57 E-value=1.7e-07 Score=80.21 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=61.4
Q ss_pred HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCCCCCCCc
Q 038698 191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHLPYPSRA 267 (283)
Q Consensus 191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rLPFpd~S 267 (283)
+.|.+.+....+ .+|||+|||+|.++..|++++. .+.++|+++.+++.++++- ....+...|+..+++++..
T Consensus 3 ~~i~~~~~~~~~--~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 3 DKIVRAANLRPG--DTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHHHhcCCCCc--CEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccC
Confidence 456666665444 5899999999999999999842 4677888888888887652 1345666789999999989
Q ss_pred eeeeeecc
Q 038698 268 FDMAQCSR 275 (283)
Q Consensus 268 FDlV~cs~ 275 (283)
||.|+++-
T Consensus 78 ~d~vi~n~ 85 (169)
T smart00650 78 PYKVVGNL 85 (169)
T ss_pred CCEEEECC
Confidence 99998863
No 51
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.57 E-value=1.5e-07 Score=91.67 Aligned_cols=84 Identities=25% Similarity=0.367 Sum_probs=63.0
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CCCeEEEeccccCCCCC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GVPAVIGVLGTIHLPYP 264 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~~a~~~v~da~rLPFp 264 (283)
...++.|.+.+.+..| .+|||||||+|.++.+|+++. ...+.++|++++|++.|.++ +....+...+...+
T Consensus 153 ~~k~~~l~~~l~l~~g--~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l--- 225 (383)
T PRK11705 153 EAKLDLICRKLQLKPG--MRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHHHHhCCCCC--CEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---
Confidence 4456777777777555 689999999999999998752 22567889999999999876 33444544565554
Q ss_pred CCceeeeeecccc
Q 038698 265 SRAFDMAQCSRCL 277 (283)
Q Consensus 265 d~SFDlV~cs~~L 277 (283)
+++||+|++..++
T Consensus 226 ~~~fD~Ivs~~~~ 238 (383)
T PRK11705 226 NGQFDRIVSVGMF 238 (383)
T ss_pred CCCCCEEEEeCch
Confidence 5899999998776
No 52
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.57 E-value=2.4e-07 Score=83.45 Aligned_cols=87 Identities=24% Similarity=0.293 Sum_probs=57.4
Q ss_pred HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CCC-eEEEeccccCCCCC
Q 038698 188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GVP-AVIGVLGTIHLPYP 264 (283)
Q Consensus 188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~~-a~~~v~da~rLPFp 264 (283)
.|...|.-.||. +..+.+||+|||.|.|+..|+.+. -.+...|+++..++.|++| +.+ +.+.+++..+ ..|
T Consensus 30 K~~~~l~aaLp~--~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P 103 (201)
T PF05401_consen 30 KYRATLLAALPR--RRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPE-FWP 103 (201)
T ss_dssp HHHHHHHHHHTT--SSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----
T ss_pred HHHHHHHHhcCc--cccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCC-CCC
Confidence 344344444664 466899999999999999999982 3566789999999999987 433 4566666544 368
Q ss_pred CCceeeeeeccccccc
Q 038698 265 SRAFDMAQCSRCLIPW 280 (283)
Q Consensus 265 d~SFDlV~cs~~Li~W 280 (283)
++.||+|+++.++--+
T Consensus 104 ~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 104 EGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SS-EEEEEEES-GGGS
T ss_pred CCCeeEEEEehHhHcC
Confidence 9999999999988433
No 53
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.56 E-value=1.2e-07 Score=85.09 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=54.9
Q ss_pred cEEeecCCCccHHHHHHhhcC-CeeEeeccccChHHHHHHHHHc----C--CCeEEEeccccCCCCCCCceeeeeecccc
Q 038698 205 RTALDTGCGVASWGAYLLKRN-VLTMSFAPRDNHEAQVQFALER----G--VPAVIGVLGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~-v~~~sla~~D~s~a~vq~A~er----g--~~a~~~v~da~rLPFpd~SFDlV~cs~~L 277 (283)
.+|||||||+|.++..|+++. -....+.++|+++.+++.|+++ + ....+..++...+|+++ +|+|+|+.++
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~~~~l 132 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVILNFTL 132 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEeeecch
Confidence 589999999999998888752 1234577889999999888764 2 23456677888898874 8999998887
No 54
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.55 E-value=2.5e-07 Score=82.16 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=60.7
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCC
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPY 263 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPF 263 (283)
.+..+.+.+.+..+ .+|||||||+|++++.|++..-....+.++|+++++++.|+++ +.. +.+...+....+.
T Consensus 65 ~~~~~~~~l~~~~~--~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 65 MVAMMTELLELKPG--MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHHhCCCCc--CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence 34566677776555 6899999999999999888632212356778888888877643 443 4455567665555
Q ss_pred CCCceeeeeecccc
Q 038698 264 PSRAFDMAQCSRCL 277 (283)
Q Consensus 264 pd~SFDlV~cs~~L 277 (283)
..+.||+|++..+.
T Consensus 143 ~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 143 PLAPYDRIYVTAAG 156 (215)
T ss_pred ccCCCCEEEEcCCc
Confidence 56799999987653
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.54 E-value=1.6e-07 Score=92.33 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=62.6
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC--C-CeEEEeccc--cCCCCC
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG--V-PAVIGVLGT--IHLPYP 264 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg--~-~a~~~v~da--~rLPFp 264 (283)
.+.+.+.++...+ .+|||||||+|.++..|+++.. .+.++|.++.+++.+.+.. . ...+...++ ..+||+
T Consensus 26 ~~~il~~l~~~~~--~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 26 RPEILSLLPPYEG--KSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hhHHHhhcCccCC--CEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCC
Confidence 4566667765333 5899999999999999998742 4678899999998876542 1 234544554 468999
Q ss_pred CCceeeeeeccccc
Q 038698 265 SRAFDMAQCSRCLI 278 (283)
Q Consensus 265 d~SFDlV~cs~~Li 278 (283)
+++||+|+|+.++-
T Consensus 101 ~~~fD~I~~~~~l~ 114 (475)
T PLN02336 101 DGSVDLIFSNWLLM 114 (475)
T ss_pred CCCEEEEehhhhHH
Confidence 99999999998873
No 56
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.52 E-value=1e-07 Score=88.20 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=56.6
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeE----EEeccccCCCCC-
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAV----IGVLGTIHLPYP- 264 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~----~~v~da~rLPFp- 264 (283)
++.+.+.....++ .+.++|||||+| .+++..+.- --.+.+.|++++|+++|.+.-.... ....+.+-.++-
T Consensus 21 tdw~~~ia~~~~~-h~~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g 96 (261)
T KOG3010|consen 21 TDWFKKIASRTEG-HRLAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG 96 (261)
T ss_pred HHHHHHHHhhCCC-cceEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC
Confidence 4444444443334 368999999999 555544421 1134567999999999986421111 222234455665
Q ss_pred -CCceeeeeeccccccccc
Q 038698 265 -SRAFDMAQCSRCLIPWTS 282 (283)
Q Consensus 265 -d~SFDlV~cs~~Li~W~~ 282 (283)
++|.|||+|.+|+ ||-.
T Consensus 97 ~e~SVDlI~~Aqa~-HWFd 114 (261)
T KOG3010|consen 97 GEESVDLITAAQAV-HWFD 114 (261)
T ss_pred CCcceeeehhhhhH-Hhhc
Confidence 9999999999999 9964
No 57
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.51 E-value=1.4e-07 Score=83.44 Aligned_cols=75 Identities=23% Similarity=0.291 Sum_probs=57.7
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccc-cCCC--CCCCceeeeeeccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGT-IHLP--YPSRAFDMAQCSRC 276 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da-~rLP--Fpd~SFDlV~cs~~ 276 (283)
.+|||+|||+|.++..|+++.. ...+.++|+++.+++.|.++ +. +..+..+++ +.++ +++++||+|++..+
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 6899999999999999887532 23577889999998887643 33 345666777 7888 89999999998765
Q ss_pred ccccc
Q 038698 277 LIPWT 281 (283)
Q Consensus 277 Li~W~ 281 (283)
. +|.
T Consensus 121 ~-p~~ 124 (202)
T PRK00121 121 D-PWP 124 (202)
T ss_pred C-CCC
Confidence 4 664
No 58
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.50 E-value=8.3e-08 Score=85.80 Aligned_cols=80 Identities=14% Similarity=0.057 Sum_probs=52.2
Q ss_pred HHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCC-------
Q 038698 190 IDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHL------- 261 (283)
Q Consensus 190 id~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rL------- 261 (283)
+.+|.+.+. +..| .+|||+|||+|.++..|+++......+.++|+++ + ..-..+.+..+|+..+
T Consensus 39 l~~~~~~~~~~~~~--~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~~~v~~i~~D~~~~~~~~~i~ 110 (209)
T PRK11188 39 LDEIQQSDKLFKPG--MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPIVGVDFLQGDFRDELVLKALL 110 (209)
T ss_pred hHHHHHHhccCCCC--CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCCCCcEEEecCCCChHHHHHHH
Confidence 555555555 3344 5899999999999999988632222455666655 1 1111234555676665
Q ss_pred -CCCCCceeeeeecccc
Q 038698 262 -PYPSRAFDMAQCSRCL 277 (283)
Q Consensus 262 -PFpd~SFDlV~cs~~L 277 (283)
++.+++||+|+|..+.
T Consensus 111 ~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 111 ERVGDSKVQVVMSDMAP 127 (209)
T ss_pred HHhCCCCCCEEecCCCC
Confidence 3788999999998765
No 59
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.49 E-value=2.4e-07 Score=84.25 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=53.7
Q ss_pred cEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCCCCCCceeeeeecccc
Q 038698 205 RTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLPFpd~SFDlV~cs~~L 277 (283)
.+|||||||+|.++..|++. .-....+.++|+++.|++.|+++ +. ...+...++..+|+++ +|+|+|+.++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEehhhHH
Confidence 58999999999998887763 11233577889999999988765 23 3456667788888864 8999998876
No 60
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.48 E-value=1.8e-08 Score=78.04 Aligned_cols=71 Identities=25% Similarity=0.299 Sum_probs=38.8
Q ss_pred eecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCC-C-CCCCceeeeeecccccc
Q 038698 208 LDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHL-P-YPSRAFDMAQCSRCLIP 279 (283)
Q Consensus 208 LDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rL-P-Fpd~SFDlV~cs~~Li~ 279 (283)
||||||+|.++..|+++. ....+.+.|+++.+++.|+++ +. ...........+ . ...++||+|++..++-+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 899999999999998874 345677888888887655443 21 112222222222 1 12269999999999843
No 61
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.47 E-value=1.1e-06 Score=78.34 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=60.1
Q ss_pred hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccC
Q 038698 186 ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIH 260 (283)
Q Consensus 186 a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~r 260 (283)
....++.+.+.++. ...+|||+|||+|.++..|++... ...+.++|+++.+++.|.+. +.. ..+..++...
T Consensus 73 ~~~l~~~~l~~~~~---~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 73 TEELVEAALERLKK---GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE 148 (251)
T ss_pred hHHHHHHHHHhccc---CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc
Confidence 35566666666653 225899999999999999988632 22567889999888877543 443 4455556544
Q ss_pred CCCCCCceeeeeecc
Q 038698 261 LPYPSRAFDMAQCSR 275 (283)
Q Consensus 261 LPFpd~SFDlV~cs~ 275 (283)
++++++||+|+|+-
T Consensus 149 -~~~~~~fD~Vi~np 162 (251)
T TIGR03534 149 -PLPGGKFDLIVSNP 162 (251)
T ss_pred -cCcCCceeEEEECC
Confidence 67889999999953
No 62
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.43 E-value=6.4e-07 Score=83.83 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=64.4
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCe-----eEeeccccChHHHHHHHHHc----CCC----eEEEe
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVL-----TMSFAPRDNHEAQVQFALER----GVP----AVIGV 255 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~-----~~sla~~D~s~a~vq~A~er----g~~----a~~~v 255 (283)
+-|.....+...+| .++|||+||||-.+-.+++.--. ...+...|+++.|+..+.+| +.. ..+..
T Consensus 88 WKd~~v~~L~p~~~--m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~ 165 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKG--MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE 165 (296)
T ss_pred HHHHhhhccCCCCC--CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence 44455555655445 78999999999888777764111 12345567778877666544 332 34666
Q ss_pred ccccCCCCCCCceeeeeecccccccc
Q 038698 256 LGTIHLPYPSRAFDMAQCSRCLIPWT 281 (283)
Q Consensus 256 ~da~rLPFpd~SFDlV~cs~~Li~W~ 281 (283)
+|++.|||+|++||+.+.+--+-+|+
T Consensus 166 ~dAE~LpFdd~s~D~yTiafGIRN~t 191 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIAFGIRNVT 191 (296)
T ss_pred CCcccCCCCCCcceeEEEecceecCC
Confidence 79999999999999999988777775
No 63
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.41 E-value=1.1e-06 Score=79.08 Aligned_cols=71 Identities=18% Similarity=0.083 Sum_probs=53.3
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH-HcCC----------------CeEEEeccccCCCCC-CC
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL-ERGV----------------PAVIGVLGTIHLPYP-SR 266 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~-erg~----------------~a~~~v~da~rLPFp-d~ 266 (283)
.+|||+|||.|..+.+|++++. ++.++|+++..++.|. +.++ .+.+.++|...++.. ..
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 5899999999999999999854 4567899998887653 3333 244566777777653 46
Q ss_pred ceeeeeeccccc
Q 038698 267 AFDMAQCSRCLI 278 (283)
Q Consensus 267 SFDlV~cs~~Li 278 (283)
.||.|+-..++.
T Consensus 113 ~fD~i~D~~~~~ 124 (213)
T TIGR03840 113 PVDAVYDRAALI 124 (213)
T ss_pred CcCEEEechhhc
Confidence 799999877764
No 64
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.40 E-value=1.8e-06 Score=68.02 Aligned_cols=85 Identities=14% Similarity=0.005 Sum_probs=57.6
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccC-CCC
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIH-LPY 263 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~r-LPF 263 (283)
.+.+.+.+....+ .+|||+|||+|.++..++++... ..+.++|.++.+++.|.+. +.. ..+...+... +++
T Consensus 8 ~~~~~~~~~~~~~--~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 8 RALTLSKLRLRPG--DVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED 84 (124)
T ss_pred HHHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh
Confidence 3345555555333 58999999999999999886322 3567889998888776532 332 3444445443 555
Q ss_pred CCCceeeeeecccc
Q 038698 264 PSRAFDMAQCSRCL 277 (283)
Q Consensus 264 pd~SFDlV~cs~~L 277 (283)
...+||.|++..+.
T Consensus 85 ~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 85 SLPEPDRVFIGGSG 98 (124)
T ss_pred hcCCCCEEEECCcc
Confidence 56799999997654
No 65
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.40 E-value=4.3e-07 Score=80.12 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=52.8
Q ss_pred EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCCCceeeeeeccccc
Q 038698 206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPSRAFDMAQCSRCLI 278 (283)
Q Consensus 206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd~SFDlV~cs~~Li 278 (283)
+|||||||+|.++..|++... ...+.++|+++++++.|.++ |.. ..+...+..+.|++ ++||+|++..++-
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 699999999999998887531 13567889999998887754 332 34555677677886 4899999988763
No 66
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.39 E-value=1.1e-06 Score=78.63 Aligned_cols=80 Identities=21% Similarity=0.384 Sum_probs=54.1
Q ss_pred HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHH----HHHHcCCCeEEEeccccCCCCCCCc
Q 038698 192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQ----FALERGVPAVIGVLGTIHLPYPSRA 267 (283)
Q Consensus 192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq----~A~erg~~a~~~v~da~rLPFpd~S 267 (283)
.+.+.++...+ .++||+|||.|..+.+|++++. ++..+|.++..++ .|.+.+++....+.|.....++ +.
T Consensus 21 ~v~~a~~~~~~--g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~ 94 (192)
T PF03848_consen 21 EVLEAVPLLKP--GKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EE 94 (192)
T ss_dssp HHHHHCTTS-S--SEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TT
T ss_pred HHHHHHhhcCC--CcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CC
Confidence 45566664322 4899999999999999999865 3455677765554 3455688877777787777775 68
Q ss_pred eeeeeecccc
Q 038698 268 FDMAQCSRCL 277 (283)
Q Consensus 268 FDlV~cs~~L 277 (283)
||+|++.-++
T Consensus 95 yD~I~st~v~ 104 (192)
T PF03848_consen 95 YDFIVSTVVF 104 (192)
T ss_dssp EEEEEEESSG
T ss_pred cCEEEEEEEe
Confidence 9999987555
No 67
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.38 E-value=6.4e-07 Score=79.30 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=51.9
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC-eEEEeccccCCCCCCCceeeeeecc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP-AVIGVLGTIHLPYPSRAFDMAQCSR 275 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~-a~~~v~da~rLPFpd~SFDlV~cs~ 275 (283)
.+|||+|||+|.++..|+.+.. ...+.++|.++.+++.|.+ .+.. ..+..+++..++. +++||+|+|..
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 6899999999998888776321 2356788999888877654 2543 4566667888887 88999999964
No 68
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.5e-06 Score=82.59 Aligned_cols=102 Identities=23% Similarity=0.292 Sum_probs=71.0
Q ss_pred CCeeeeCCCCCCCCCch-hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-
Q 038698 170 GNVFKFPGGGTMFPQGA-DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER- 247 (283)
Q Consensus 170 ~~~~~Fpgggt~F~~ga-~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er- 247 (283)
|.-++|-.-...|.++. |.=.+.|.+.++...+. +|||+|||-|.++..|+++.. ...++..|++...++.|++.
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl 202 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNL 202 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhH
Confidence 44455555555777655 44477888888865443 899999999999999999865 33677789888888887643
Q ss_pred ---CCCeEEEeccccCCCCCCCceeeeeecc
Q 038698 248 ---GVPAVIGVLGTIHLPYPSRAFDMAQCSR 275 (283)
Q Consensus 248 ---g~~a~~~v~da~rLPFpd~SFDlV~cs~ 275 (283)
++.......+.--.+-.+ .||+|+|+-
T Consensus 203 ~~N~~~~~~v~~s~~~~~v~~-kfd~IisNP 232 (300)
T COG2813 203 AANGVENTEVWASNLYEPVEG-KFDLIISNP 232 (300)
T ss_pred HHcCCCccEEEEecccccccc-cccEEEeCC
Confidence 444322223444556666 999999974
No 69
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.37 E-value=1e-06 Score=82.26 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=48.7
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeecc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSR 275 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~ 275 (283)
.+|||+|||+|.++..+++.+. ..+.++|+++.+++.|++. ++...+.+.....+++.++.||+|+|+.
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~ 233 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANI 233 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEec
Confidence 6899999999999888877643 2567889999888887654 3332222222224566788999999964
No 70
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.35 E-value=9.6e-07 Score=81.75 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=61.9
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC--CCeEEEeccccCCCCCCC
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG--VPAVIGVLGTIHLPYPSR 266 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg--~~a~~~v~da~rLPFpd~ 266 (283)
.++.|.+.+....+ .+|||||||+|.++..|+++.. .+.++|+++++++.+.++- ....+..+|+..+++++-
T Consensus 30 i~~~i~~~l~~~~~--~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~ 104 (272)
T PRK00274 30 ILDKIVDAAGPQPG--DNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSEL 104 (272)
T ss_pred HHHHHHHhcCCCCc--CeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHc
Confidence 46677777766444 6899999999999999999853 5678899999988887642 245566678888888764
Q ss_pred ceeeeeec
Q 038698 267 AFDMAQCS 274 (283)
Q Consensus 267 SFDlV~cs 274 (283)
.+|.|+++
T Consensus 105 ~~~~vv~N 112 (272)
T PRK00274 105 QPLKVVAN 112 (272)
T ss_pred CcceEEEe
Confidence 46888876
No 71
>PRK14967 putative methyltransferase; Provisional
Probab=98.35 E-value=2.9e-06 Score=75.76 Aligned_cols=68 Identities=19% Similarity=0.109 Sum_probs=50.0
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeecc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSR 275 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~ 275 (283)
.+|||+|||+|.++..|+..+. ..+.++|+++.+++.|+++ +....+...+... ++++++||+|+|+.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~np 109 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNP 109 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECC
Confidence 5899999999999998887643 2567788888888766542 4444455555543 46788999999973
No 72
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.34 E-value=1.2e-06 Score=76.82 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=49.4
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC-eEEEeccccCCCCCCCceeeeeecc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP-AVIGVLGTIHLPYPSRAFDMAQCSR 275 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~-a~~~v~da~rLPFpd~SFDlV~cs~ 275 (283)
.+|||+|||+|.++..|+.... ...+.++|.++.+++.+.+ .+.. ..+..++++.++ .+++||+|+|..
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA 117 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh
Confidence 6899999999999888775422 2346778888887766542 3553 445566777775 468999999864
No 73
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.33 E-value=1.7e-06 Score=74.48 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=51.1
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCCCceeeeeeccccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPSRAFDMAQCSRCLI 278 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd~SFDlV~cs~~Li 278 (283)
.+|||+|||+|.++..|.+++. .+.++|+++++++.|.++ +....+...+....+ .++||+|+++...+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYL 93 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCC
Confidence 5799999999999999998754 567889999988877653 344444445654433 46999999986554
No 74
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.33 E-value=1.7e-06 Score=79.48 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=63.2
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCCCC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHLPY 263 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rLPF 263 (283)
...++.|.+.+....+ .+|||||||+|.++..|+++.. .+.++|+++.+++.+.++- ....+..+|+..+++
T Consensus 15 ~~~~~~iv~~~~~~~~--~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDG--DPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHHhcCCCCc--CeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc
Confidence 4467788888776544 6899999999999999999743 4677889999888887652 134566678888887
Q ss_pred CCCceeeeeeccc
Q 038698 264 PSRAFDMAQCSRC 276 (283)
Q Consensus 264 pd~SFDlV~cs~~ 276 (283)
++ ||.|+++.-
T Consensus 90 ~~--~d~Vv~NlP 100 (258)
T PRK14896 90 PE--FNKVVSNLP 100 (258)
T ss_pred hh--ceEEEEcCC
Confidence 64 899998754
No 75
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.33 E-value=5.8e-07 Score=71.00 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=54.8
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccCCC--CCCCceeeeeeccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIHLP--YPSRAFDMAQCSRC 276 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~rLP--Fpd~SFDlV~cs~~ 276 (283)
.+|||+|||+|.++..++++. ...+.++|+++..++.|+++ +. +..+.+.|...++ +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 489999999999999988876 34678899999988887653 33 3567777877776 89999999999765
Q ss_pred cc
Q 038698 277 LI 278 (283)
Q Consensus 277 Li 278 (283)
..
T Consensus 80 ~~ 81 (117)
T PF13659_consen 80 YG 81 (117)
T ss_dssp TT
T ss_pred Cc
Confidence 44
No 76
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.33 E-value=2.7e-06 Score=81.83 Aligned_cols=92 Identities=18% Similarity=0.243 Sum_probs=60.4
Q ss_pred CCCCc-hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEe
Q 038698 181 MFPQG-ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGV 255 (283)
Q Consensus 181 ~F~~g-a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v 255 (283)
.|..+ .+.-.+.+.+.++.... .+|||+|||+|.++..|+++.. ...+.++|+++.+++.|.+. ++...+..
T Consensus 175 vFs~~~lD~gt~lLl~~l~~~~~--g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~ 251 (342)
T PRK09489 175 VFSRDGLDVGSQLLLSTLTPHTK--GKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVFA 251 (342)
T ss_pred CCCCCCCCHHHHHHHHhccccCC--CeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEE
Confidence 44442 34444556666653222 3799999999999999998743 23577889999888877542 44444443
Q ss_pred ccccCCCCCCCceeeeeecccc
Q 038698 256 LGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 256 ~da~rLPFpd~SFDlV~cs~~L 277 (283)
.+. +...++.||+|+|+-.+
T Consensus 252 ~D~--~~~~~~~fDlIvsNPPF 271 (342)
T PRK09489 252 SNV--FSDIKGRFDMIISNPPF 271 (342)
T ss_pred ccc--ccccCCCccEEEECCCc
Confidence 443 23347899999998654
No 77
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.31 E-value=1.2e-06 Score=77.08 Aligned_cols=71 Identities=20% Similarity=0.275 Sum_probs=53.3
Q ss_pred ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCCC-CCceeeeeecccc
Q 038698 204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPYP-SRAFDMAQCSRCL 277 (283)
Q Consensus 204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPFp-d~SFDlV~cs~~L 277 (283)
..+|||+|||+|.++..|++.+. .+.+.|.++.++..+.++ +. ...+...+...++.. .++||+|+++.++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 36899999999999998887643 366788888887777653 33 345555677777765 4899999998766
No 78
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.30 E-value=3.2e-07 Score=85.83 Aligned_cols=69 Identities=25% Similarity=0.305 Sum_probs=50.0
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC--CeE---------EEeccccCCCCCCCceeeeee
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV--PAV---------IGVLGTIHLPYPSRAFDMAQC 273 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~--~a~---------~~v~da~rLPFpd~SFDlV~c 273 (283)
++|||||||+|-++.-|++.+. +++|+|+++++|+.|.+... |.. +...+++.+ .+.||.|+|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeee
Confidence 6799999999999999999764 57899999999999987521 110 111223332 223999999
Q ss_pred cccccc
Q 038698 274 SRCLIP 279 (283)
Q Consensus 274 s~~Li~ 279 (283)
+.++.+
T Consensus 165 sevleH 170 (282)
T KOG1270|consen 165 SEVLEH 170 (282)
T ss_pred HHHHHH
Confidence 999865
No 79
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.30 E-value=3.6e-06 Score=82.29 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=62.8
Q ss_pred eeeeCCCCCCCCCch-hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---
Q 038698 172 VFKFPGGGTMFPQGA-DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--- 247 (283)
Q Consensus 172 ~~~Fpgggt~F~~ga-~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--- 247 (283)
.+.|-.-...|..+. |.=.+.+.+.++...+ .+|||+|||+|.++..|+++... ..+.++|+++.+++.|++.
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~ 274 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVET 274 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHH
Confidence 344433333444432 3224456667765322 48999999999999999887532 3577889999888887643
Q ss_pred -CC----CeEEEeccccCCCCCCCceeeeeecccc
Q 038698 248 -GV----PAVIGVLGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 248 -g~----~a~~~v~da~rLPFpd~SFDlV~cs~~L 277 (283)
+. .+.+...+... .+++.+||+|+|+-.+
T Consensus 275 n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 275 NMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPF 308 (378)
T ss_pred cCcccCceEEEEEccccc-cCCCCCEEEEEECcCc
Confidence 22 12333333321 2355789999997544
No 80
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.30 E-value=2.9e-06 Score=73.02 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=53.9
Q ss_pred HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCC
Q 038698 192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSR 266 (283)
Q Consensus 192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~ 266 (283)
.|.+.++... ..+|||+|||+|.++..|+++... ..+...|+++.+++.|.+. ++. +.+...|... +++++
T Consensus 22 lL~~~l~~~~--~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~ 97 (170)
T PF05175_consen 22 LLLDNLPKHK--GGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDG 97 (170)
T ss_dssp HHHHHHHHHT--TCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTT
T ss_pred HHHHHHhhcc--CCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-ccccc
Confidence 4445444322 258999999999999999987543 2467889999988877542 454 4444445322 44589
Q ss_pred ceeeeeec
Q 038698 267 AFDMAQCS 274 (283)
Q Consensus 267 SFDlV~cs 274 (283)
.||+|+|+
T Consensus 98 ~fD~Iv~N 105 (170)
T PF05175_consen 98 KFDLIVSN 105 (170)
T ss_dssp CEEEEEE-
T ss_pred ceeEEEEc
Confidence 99999997
No 81
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.30 E-value=2.2e-06 Score=76.21 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=60.7
Q ss_pred HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC-
Q 038698 188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP- 262 (283)
Q Consensus 188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP- 262 (283)
..++.|...+....+ .+|||||||+|.++..|.+++. .+.++|.++.+++.|.++ +....+...+...++
T Consensus 35 ~~~~~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 109 (233)
T PRK05134 35 LRLNYIREHAGGLFG--KRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAA 109 (233)
T ss_pred HHHHHHHHhccCCCC--CeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhh
Confidence 345566666643323 6899999999999998888753 467788888888777654 333344445555554
Q ss_pred CCCCceeeeeecccccc
Q 038698 263 YPSRAFDMAQCSRCLIP 279 (283)
Q Consensus 263 Fpd~SFDlV~cs~~Li~ 279 (283)
..++.||+|+|+.++.+
T Consensus 110 ~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 110 EHPGQFDVVTCMEMLEH 126 (233)
T ss_pred hcCCCccEEEEhhHhhc
Confidence 46689999999887644
No 82
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.30 E-value=3.5e-06 Score=76.16 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=53.7
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH-HcCCC----------------eEEEeccccCCCCCC-C
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL-ERGVP----------------AVIGVLGTIHLPYPS-R 266 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~-erg~~----------------a~~~v~da~rLPFpd-~ 266 (283)
.+|||+|||+|..+.+|++++. ++.++|+++..++.+. ++++. +.+.++|...++..+ .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 4899999999999999999865 4678899999888653 44442 335567777775433 6
Q ss_pred ceeeeeeccccc
Q 038698 267 AFDMAQCSRCLI 278 (283)
Q Consensus 267 SFDlV~cs~~Li 278 (283)
.||+|+-+.++.
T Consensus 116 ~fd~v~D~~~~~ 127 (218)
T PRK13255 116 DVDAVYDRAALI 127 (218)
T ss_pred CeeEEEehHhHh
Confidence 899999887764
No 83
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.29 E-value=9.9e-07 Score=77.42 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=55.3
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC---CCCCceeeeeeccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP---YPSRAFDMAQCSRC 276 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP---Fpd~SFDlV~cs~~ 276 (283)
.+|||||||+|.++..|+++... ..+.++|+++.+++.|.++ ++. ..+..+++..++ +++++||.|+.+-.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 58999999999999999887432 3567888888888777543 443 445556776655 67889999998754
Q ss_pred ccccc
Q 038698 277 LIPWT 281 (283)
Q Consensus 277 Li~W~ 281 (283)
.||.
T Consensus 97 -dpw~ 100 (194)
T TIGR00091 97 -DPWP 100 (194)
T ss_pred -CcCC
Confidence 3674
No 84
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.27 E-value=2.2e-06 Score=84.13 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=56.8
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC-eEEEeccccCC--CCCCCceeeeeecccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP-AVIGVLGTIHL--PYPSRAFDMAQCSRCL 277 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~-a~~~v~da~rL--PFpd~SFDlV~cs~~L 277 (283)
..+||||||+|.++..|+.+.. ...+.|+|+++.++..|++ .++. +.+..+|+..+ +|++++||.|+++-.
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP- 201 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP- 201 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-
Confidence 5899999999999999998753 2356788888887766643 3554 34556677655 689999999998754
Q ss_pred ccccc
Q 038698 278 IPWTS 282 (283)
Q Consensus 278 i~W~~ 282 (283)
.||..
T Consensus 202 dPW~K 206 (390)
T PRK14121 202 VPWDK 206 (390)
T ss_pred CCccc
Confidence 58853
No 85
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.27 E-value=3.5e-06 Score=77.09 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=62.6
Q ss_pred CCeeeeCCCCCCCCCchhHHHHHHHhhCCC-CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC
Q 038698 170 GNVFKFPGGGTMFPQGADAYIDELASVIPI-KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG 248 (283)
Q Consensus 170 ~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~-~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg 248 (283)
++.+.+-+... |-..+...+..+.+.++. ..+ .++||+|||||.|+..|+++++ -.+.++|++..|+...++..
T Consensus 44 ~d~I~v~~~~~-~vsr~~~kL~~~l~~~~~~~~~--~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 44 DAKIELLQNPL-FVSRGGEKLKEALEEFNIDVKN--KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred CCEEeccCccc-hhhhhHHHHHHHHHhcCCCCCC--CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcC
Confidence 34455544322 333334445666666654 233 6899999999999999999854 24667899888876654443
Q ss_pred CCeE-EEecccc-----CCCCCCCceeeeeecccc
Q 038698 249 VPAV-IGVLGTI-----HLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 249 ~~a~-~~v~da~-----rLPFpd~SFDlV~cs~~L 277 (283)
.... +...+.+ .++..-..||++++|.++
T Consensus 119 ~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~ 153 (228)
T TIGR00478 119 ERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS 153 (228)
T ss_pred CCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh
Confidence 3322 2222333 233233589999988764
No 86
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.26 E-value=9e-07 Score=80.69 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=49.8
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCC
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYP 264 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFp 264 (283)
-++.|.+.+. .+ .+|||+|||+|.++..+++.+.. .+.++|+++.+++.|+++ ++... ..++..
T Consensus 109 ~l~~l~~~~~--~~--~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~------~~~~~~ 176 (250)
T PRK00517 109 CLEALEKLVL--PG--KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELN------VYLPQG 176 (250)
T ss_pred HHHHHHhhcC--CC--CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCce------EEEccC
Confidence 3445544432 23 68999999999998887776543 367889999999888754 22111 123333
Q ss_pred CCceeeeeecc
Q 038698 265 SRAFDMAQCSR 275 (283)
Q Consensus 265 d~SFDlV~cs~ 275 (283)
+.+||+|+|+.
T Consensus 177 ~~~fD~Vvani 187 (250)
T PRK00517 177 DLKADVIVANI 187 (250)
T ss_pred CCCcCEEEEcC
Confidence 44899999864
No 87
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.25 E-value=6.9e-07 Score=82.89 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=64.0
Q ss_pred CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---CCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698 203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---GVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP 279 (283)
Q Consensus 203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---g~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~ 279 (283)
...+++|||||.|.....|+.++|. .+...|.+-.|++.++.- ++.....+.|-+.|||.+++||+|++|.-+ +
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-H 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-H 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-h
Confidence 3468999999999999999998864 456678888998888754 344556678999999999999999999998 9
Q ss_pred ccc
Q 038698 280 WTS 282 (283)
Q Consensus 280 W~~ 282 (283)
|+.
T Consensus 149 W~N 151 (325)
T KOG2940|consen 149 WTN 151 (325)
T ss_pred hhc
Confidence 974
No 88
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.24 E-value=6.5e-06 Score=71.32 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=53.4
Q ss_pred HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCC
Q 038698 192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSR 266 (283)
Q Consensus 192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~ 266 (283)
.+.+.+....+ .+|||+|||+|.++..++++.. ...+.++|+++.+++.|.++ ++. ..+...+. ..+++ +
T Consensus 22 ~~~~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~-~~~~~-~ 96 (187)
T PRK08287 22 LALSKLELHRA--KHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA-PIELP-G 96 (187)
T ss_pred HHHHhcCCCCC--CEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc-hhhcC-c
Confidence 34455655444 6899999999999998887632 23567888888888877542 332 33333443 23443 6
Q ss_pred ceeeeeeccc
Q 038698 267 AFDMAQCSRC 276 (283)
Q Consensus 267 SFDlV~cs~~ 276 (283)
+||+|++...
T Consensus 97 ~~D~v~~~~~ 106 (187)
T PRK08287 97 KADAIFIGGS 106 (187)
T ss_pred CCCEEEECCC
Confidence 8999998764
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=98.20 E-value=4.5e-06 Score=70.87 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=50.2
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC---eEEEeccccCCCCCCCceeeeeecccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP---AVIGVLGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~---a~~~v~da~rLPFpd~SFDlV~cs~~L 277 (283)
.+|||+|||+|.++..|++++ ..+.+.|.++.+++.+++. +.. +.+...+... ++++++||+|+++.-.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 589999999999999998873 3567789999888777543 332 4444445433 5677799999987543
No 90
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.18 E-value=5.1e-06 Score=78.71 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=57.0
Q ss_pred HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCC
Q 038698 191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPS 265 (283)
Q Consensus 191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd 265 (283)
..+..+.....| .+|||.|||+|+++..++..+ ..+.+.|+++.+++.|++. |+. ..+..+|+.++|+++
T Consensus 172 ~~~~~l~~~~~g--~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 172 RAMVNLARVTEG--DRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS 246 (329)
T ss_pred HHHHHHhCCCCc--CEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc
Confidence 344445444444 589999999999876655543 2466789988888766532 443 346667899999999
Q ss_pred Cceeeeeec
Q 038698 266 RAFDMAQCS 274 (283)
Q Consensus 266 ~SFDlV~cs 274 (283)
++||+|+|.
T Consensus 247 ~~~D~Iv~d 255 (329)
T TIGR01177 247 ESVDAIATD 255 (329)
T ss_pred CCCCEEEEC
Confidence 999999995
No 91
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.18 E-value=3.8e-06 Score=82.81 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=60.9
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEecccc--
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTI-- 259 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~-- 259 (283)
...++.+.+++....+ .+|||+|||+|.++..|+++. ..+.++|+++++++.|.+. ++ ++.+..+++.
T Consensus 283 e~l~~~vl~~l~~~~~--~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 283 QKMVARALEWLDPQPG--DRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHhcCCCC--CEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence 4556677777765444 689999999999999998874 2567889999998887643 44 3445555643
Q ss_pred --CCCCCCCceeeeeec
Q 038698 260 --HLPYPSRAFDMAQCS 274 (283)
Q Consensus 260 --rLPFpd~SFDlV~cs 274 (283)
.+|+.+++||+|++.
T Consensus 358 l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 358 FTDQPWALGGFDKVLLD 374 (443)
T ss_pred hhhhhhhcCCCCEEEEC
Confidence 356878899999974
No 92
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.16 E-value=5.9e-06 Score=79.11 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=59.3
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCC
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPY 263 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPF 263 (283)
....+.+.+.+..+ .+|||||||+|.+++.|++.......+.++|.++++++.|+++ |.. +.+..+++...+.
T Consensus 68 l~a~ll~~L~i~~g--~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~ 145 (322)
T PRK13943 68 LMALFMEWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP 145 (322)
T ss_pred HHHHHHHhcCCCCC--CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc
Confidence 34456666665544 5899999999999999987521111356778888888777642 443 4455567766666
Q ss_pred CCCceeeeeeccc
Q 038698 264 PSRAFDMAQCSRC 276 (283)
Q Consensus 264 pd~SFDlV~cs~~ 276 (283)
..+.||+|++...
T Consensus 146 ~~~~fD~Ii~~~g 158 (322)
T PRK13943 146 EFAPYDVIFVTVG 158 (322)
T ss_pred ccCCccEEEECCc
Confidence 6788999998643
No 93
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.16 E-value=9.2e-06 Score=71.70 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=55.4
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCC
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYP 264 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFp 264 (283)
...+.+.+....+ .+|||||||+|.++..|++... .+.++|.++++++.|.++ +.. +.+...+......+
T Consensus 67 ~~~l~~~l~~~~~--~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 67 VARMTELLELKPG--DRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA 141 (212)
T ss_pred HHHHHHhcCCCCC--CEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc
Confidence 3455566665444 6899999999999987777532 456778888888777653 442 44544554332224
Q ss_pred CCceeeeeecccc
Q 038698 265 SRAFDMAQCSRCL 277 (283)
Q Consensus 265 d~SFDlV~cs~~L 277 (283)
.+.||+|++..+.
T Consensus 142 ~~~fD~I~~~~~~ 154 (212)
T PRK00312 142 YAPFDRILVTAAA 154 (212)
T ss_pred CCCcCEEEEccCc
Confidence 5899999987654
No 94
>PLN03075 nicotianamine synthase; Provisional
Probab=98.13 E-value=5.1e-06 Score=78.92 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=55.1
Q ss_pred CccEEeecCCCccHHHHH-HhhcCCeeEeeccccChHHHHHHHHHc-----CC--CeEEEeccccCCCCCCCceeeeeec
Q 038698 203 SVRTALDTGCGVASWGAY-LLKRNVLTMSFAPRDNHEAQVQFALER-----GV--PAVIGVLGTIHLPYPSRAFDMAQCS 274 (283)
Q Consensus 203 ~~r~VLDVGCGtGsfaa~-L~~r~v~~~sla~~D~s~a~vq~A~er-----g~--~a~~~v~da~rLPFpd~SFDlV~cs 274 (283)
.+++|||||||.|-+++. |+++-.....+.++|.++++++.|++. ++ ...|.++++..++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 358999999997755444 333323334678899999999888642 33 2557677766654346789999999
Q ss_pred ccccccc
Q 038698 275 RCLIPWT 281 (283)
Q Consensus 275 ~~Li~W~ 281 (283)
+++.|.
T Consensus 203 -ALi~~d 208 (296)
T PLN03075 203 -ALVGMD 208 (296)
T ss_pred -cccccc
Confidence 999995
No 95
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.13 E-value=1.3e-05 Score=79.60 Aligned_cols=85 Identities=11% Similarity=0.140 Sum_probs=57.3
Q ss_pred hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCC
Q 038698 186 ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHL 261 (283)
Q Consensus 186 a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rL 261 (283)
.+..++.+.+.++. + .+|||+|||+|.++..|+.+.. ...+.++|+++++++.|++. +....+...|....
T Consensus 238 TE~LVe~aL~~l~~--~--~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~ 312 (423)
T PRK14966 238 TEHLVEAVLARLPE--N--GRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDT 312 (423)
T ss_pred HHHHHHHhhhccCC--C--CEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcc
Confidence 35556665555432 2 4899999999999988876422 23467889999998887653 44455555565443
Q ss_pred CCC-CCceeeeeecc
Q 038698 262 PYP-SRAFDMAQCSR 275 (283)
Q Consensus 262 PFp-d~SFDlV~cs~ 275 (283)
.++ +++||+|+|+-
T Consensus 313 ~l~~~~~FDLIVSNP 327 (423)
T PRK14966 313 DMPSEGKWDIIVSNP 327 (423)
T ss_pred ccccCCCccEEEECC
Confidence 333 46899999965
No 96
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.12 E-value=1.3e-05 Score=78.70 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=57.0
Q ss_pred HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCC--CCC
Q 038698 192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLP--YPS 265 (283)
Q Consensus 192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLP--Fpd 265 (283)
.+...+....| .+|||+|||+|..+..|+++... ..+.++|.++.+++.++++ |..+.+...|+..++ +++
T Consensus 235 ~~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 235 LAATLLAPQNG--ERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHcCCCCC--CEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhccc
Confidence 44455655555 68999999999999998886321 3567889999888777543 555556666777765 457
Q ss_pred Cceeeeee
Q 038698 266 RAFDMAQC 273 (283)
Q Consensus 266 ~SFDlV~c 273 (283)
++||.|++
T Consensus 312 ~~fD~Vl~ 319 (427)
T PRK10901 312 QPFDRILL 319 (427)
T ss_pred CCCCEEEE
Confidence 89999993
No 97
>PHA03412 putative methyltransferase; Provisional
Probab=98.12 E-value=3.9e-06 Score=77.64 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=52.0
Q ss_pred cEEeecCCCccHHHHHHhhcCC--eeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeec
Q 038698 205 RTALDTGCGVASWGAYLLKRNV--LTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCS 274 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v--~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs 274 (283)
.+|||+|||+|.++..++++.. ....+.++|+.+.+++.|++....+.+...|....++ +++||+|+|+
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsN 121 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISN 121 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEEC
Confidence 5899999999999988776411 1236788899999999998653345566667766665 5799999996
No 98
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.09 E-value=9.4e-06 Score=76.20 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=50.5
Q ss_pred HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc------CCCeEEEeccccC-
Q 038698 188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER------GVPAVIGVLGTIH- 260 (283)
Q Consensus 188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er------g~~a~~~v~da~r- 260 (283)
.+.+.|.+.++. + .+|||+|||+|..+..|+++......+.++|++++|++.|+++ ++.+....+|..+
T Consensus 52 ~~~~~ia~~~~~--~--~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 52 RHADEIAAATGA--G--CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred HHHHHHHHhhCC--C--CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 345566666642 2 5899999999999999988643234678999999999888654 1233334456544
Q ss_pred CCCCCC
Q 038698 261 LPYPSR 266 (283)
Q Consensus 261 LPFpd~ 266 (283)
++++..
T Consensus 128 ~~~~~~ 133 (301)
T TIGR03438 128 LALPPE 133 (301)
T ss_pred hhhhcc
Confidence 455544
No 99
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.08 E-value=8.8e-06 Score=73.43 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=55.4
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHL 261 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rL 261 (283)
-.-...+.+.+.++.| .+|||||||+|++++.|...--....+..+|..++.++.|+++ +. ++.+..+|...-
T Consensus 58 P~~~a~~l~~L~l~pg--~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 58 PSMVARMLEALDLKPG--DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred HHHHHHHHHHHhcCCC--CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence 3345577778877767 6999999999999998887411111344567777777666543 55 345666664332
Q ss_pred CCCCCceeeeeecccc
Q 038698 262 PYPSRAFDMAQCSRCL 277 (283)
Q Consensus 262 PFpd~SFDlV~cs~~L 277 (283)
--....||.|++..+.
T Consensus 136 ~~~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAV 151 (209)
T ss_dssp TGGG-SEEEEEESSBB
T ss_pred cccCCCcCEEEEeecc
Confidence 2245689999998765
No 100
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.07 E-value=1.1e-05 Score=73.59 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=58.5
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCCCCCC
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHLPYPS 265 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rLPFpd 265 (283)
.++.|.+.+....+ .+|||||||+|.++..|+++.. .+.++|.++++++.+.++- ....+..+|+..+|++
T Consensus 17 i~~~i~~~~~~~~~--~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 17 VIQKIVEAANVLEG--DVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHhcCCCCc--CEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh-
Confidence 45667777765433 6899999999999999999753 3566788888888776541 2345666788888886
Q ss_pred Ccee---eeeecc
Q 038698 266 RAFD---MAQCSR 275 (283)
Q Consensus 266 ~SFD---lV~cs~ 275 (283)
+|| +|+++.
T Consensus 91 -~~d~~~~vvsNl 102 (253)
T TIGR00755 91 -DFPKQLKVVSNL 102 (253)
T ss_pred -HcCCcceEEEcC
Confidence 566 777764
No 101
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.07 E-value=3.5e-06 Score=84.73 Aligned_cols=139 Identities=19% Similarity=0.318 Sum_probs=92.7
Q ss_pred ccccccCCCCC-----CCCCCCCCCCCceeee--cccCCchhhhhh---hhcCceeecCCeeeeCCCCCCCCCchhHHHH
Q 038698 122 KLHCLIPAPKG-----YMTPFPWPKGRDYVHY--ANVPHKSLTVEK---AVQNWVQFQGNVFKFPGGGTMFPQGADAYID 191 (283)
Q Consensus 122 ~~~Clv~~P~~-----Y~~P~~wP~sr~~~W~--~n~p~~~L~~~k---~~q~w~~~~~~~~~Fpgggt~F~~ga~~Yid 191 (283)
-..|+.|.|.. -..|-+||+-...+-. ........+.++ ..+.|-+. +.+|-.
T Consensus 293 l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~-----------------V~~Y~~ 355 (506)
T PF03141_consen 293 LEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKR-----------------VSHYKK 355 (506)
T ss_pred hhhhcCcCCcccccccccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHH-----------------HHHHHH
Confidence 36788888874 5677888887654322 221122222221 23344331 233432
Q ss_pred HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEecc-ccCCCCCCCceee
Q 038698 192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLG-TIHLPYPSRAFDM 270 (283)
Q Consensus 192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~d-a~rLPFpd~SFDl 270 (283)
.+. +.+..+++|.|+|...|.|.|+|.|.+..+-+|.+.+. ..+.-+....+||+-.++. | -+++++-.+++|+
T Consensus 356 l~~--~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yh--DWCE~fsTYPRTYDL 430 (506)
T PF03141_consen 356 LLG--LAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYH--DWCEAFSTYPRTYDL 430 (506)
T ss_pred hhc--ccccccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhcc--chhhccCCCCcchhh
Confidence 221 22456789999999999999999999999999999997 3444566777888632222 2 5889999999999
Q ss_pred eeeccccccccc
Q 038698 271 AQCSRCLIPWTS 282 (283)
Q Consensus 271 V~cs~~Li~W~~ 282 (283)
||++..+..|..
T Consensus 431 lHA~~lfs~~~~ 442 (506)
T PF03141_consen 431 LHADGLFSLYKD 442 (506)
T ss_pred eehhhhhhhhcc
Confidence 999999887753
No 102
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.06 E-value=2.2e-05 Score=71.19 Aligned_cols=85 Identities=16% Similarity=0.195 Sum_probs=56.9
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---C--CCeEEEeccccCC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---G--VPAVIGVLGTIHL 261 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---g--~~a~~~v~da~rL 261 (283)
+..++.+.+.+.... ..+|||+|||+|.++..|++... ...+.+.|+++.+++.|.+. . ....+...+...
T Consensus 94 e~l~~~~~~~~~~~~--~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~- 169 (275)
T PRK09328 94 EELVEWALEALLLKE--PLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE- 169 (275)
T ss_pred HHHHHHHHHhccccC--CCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-
Confidence 455665554444322 35899999999999999887632 23567889999988887754 1 123444445422
Q ss_pred CCCCCceeeeeecc
Q 038698 262 PYPSRAFDMAQCSR 275 (283)
Q Consensus 262 PFpd~SFDlV~cs~ 275 (283)
++++++||+|+|+-
T Consensus 170 ~~~~~~fD~Iv~np 183 (275)
T PRK09328 170 PLPGGRFDLIVSNP 183 (275)
T ss_pred cCCCCceeEEEECC
Confidence 45578999999963
No 103
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.06 E-value=7.1e-06 Score=77.40 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=58.3
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHL 261 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rL 261 (283)
....+.+.+++....+ .+|||+|||+|.++..|++++. .+.++|+++.+++.|.+. ++. +.+..+++..+
T Consensus 159 ~~l~~~v~~~l~~~~~--~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~ 233 (315)
T PRK03522 159 AQLYATARDWVRELPP--RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQF 233 (315)
T ss_pred HHHHHHHHHHHHhcCC--CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHH
Confidence 3445555566543223 6899999999999999998753 567889999988877532 553 55666776665
Q ss_pred CC-CCCceeeeeec
Q 038698 262 PY-PSRAFDMAQCS 274 (283)
Q Consensus 262 PF-pd~SFDlV~cs 274 (283)
.. .++.||+|++.
T Consensus 234 ~~~~~~~~D~Vv~d 247 (315)
T PRK03522 234 ATAQGEVPDLVLVN 247 (315)
T ss_pred HHhcCCCCeEEEEC
Confidence 43 45689999975
No 104
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.05 E-value=3.3e-05 Score=72.19 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=49.5
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCCCceeeeeec
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPSRAFDMAQCS 274 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd~SFDlV~cs 274 (283)
.+|||+|||+|.++..|+++.. ...+.++|+++.+++.|++. ++. ..+...|... ++++++||+|+|+
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~N 196 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSN 196 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEEC
Confidence 5899999999999999988632 22567889999998877643 543 3455555422 4567789999996
No 105
>PHA03411 putative methyltransferase; Provisional
Probab=98.05 E-value=8.6e-06 Score=76.83 Aligned_cols=71 Identities=11% Similarity=0.059 Sum_probs=53.4
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeecccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~L 277 (283)
.+|||+|||+|.++..++++.. ...+.++|+++.+++.|+++-..+.+...|+..++ .+.+||+|+++--.
T Consensus 66 grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF 136 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPF 136 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCc
Confidence 5899999999999888877531 13577889999999998875334556666776665 35789999997654
No 106
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.04 E-value=1.9e-05 Score=73.65 Aligned_cols=86 Identities=20% Similarity=0.222 Sum_probs=58.0
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEeccccCCCC
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLGTIHLPY 263 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~da~rLPF 263 (283)
.+.|.+.+.... .++|||||||+|.++..++++... ..+..+|. +.+++.|.+ .|.. ..+...|....++
T Consensus 138 ~~~l~~~~~~~~--~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~ 213 (306)
T TIGR02716 138 IQLLLEEAKLDG--VKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY 213 (306)
T ss_pred HHHHHHHcCCCC--CCEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC
Confidence 445556665533 379999999999999999887422 24456676 456666543 3443 3355567766777
Q ss_pred CCCceeeeeecccccccc
Q 038698 264 PSRAFDMAQCSRCLIPWT 281 (283)
Q Consensus 264 pd~SFDlV~cs~~Li~W~ 281 (283)
++ +|+|+++.++-.|.
T Consensus 214 ~~--~D~v~~~~~lh~~~ 229 (306)
T TIGR02716 214 PE--ADAVLFCRILYSAN 229 (306)
T ss_pred CC--CCEEEeEhhhhcCC
Confidence 65 69999999987774
No 107
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1.3e-05 Score=76.31 Aligned_cols=80 Identities=25% Similarity=0.380 Sum_probs=54.0
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCCCCCC
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHLPYPS 265 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rLPFpd 265 (283)
++.|.+++. .| ++|||+|||+|-++...++.+.. .+.+.|+.+-.++.|++. ++...........+.++.
T Consensus 153 L~~Le~~~~--~g--~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~ 226 (300)
T COG2264 153 LEALEKLLK--KG--KTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE 226 (300)
T ss_pred HHHHHHhhc--CC--CEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc
Confidence 667766665 23 79999999999888777766543 356778888888877643 555322222233455666
Q ss_pred -Cceeeeeecc
Q 038698 266 -RAFDMAQCSR 275 (283)
Q Consensus 266 -~SFDlV~cs~ 275 (283)
+.||+|+|+-
T Consensus 227 ~~~~DvIVANI 237 (300)
T COG2264 227 NGPFDVIVANI 237 (300)
T ss_pred cCcccEEEehh
Confidence 4999999974
No 108
>PRK04266 fibrillarin; Provisional
Probab=98.01 E-value=2.2e-05 Score=71.40 Aligned_cols=78 Identities=12% Similarity=-0.021 Sum_probs=50.4
Q ss_pred hhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--C-CCeEEEeccccC----CCCCCCc
Q 038698 195 SVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--G-VPAVIGVLGTIH----LPYPSRA 267 (283)
Q Consensus 195 ~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g-~~a~~~v~da~r----LPFpd~S 267 (283)
+.+++..| .+|||+|||+|.++..|+++-. ...+.++|+++.+++.+.++ . .++.+..+++.. .+++ .+
T Consensus 66 ~~l~i~~g--~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~ 141 (226)
T PRK04266 66 KNFPIKKG--SKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EK 141 (226)
T ss_pred hhCCCCCC--CEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-cc
Confidence 45776666 5899999999999999988621 22467789998877644322 1 123333445443 2333 56
Q ss_pred eeeeeeccc
Q 038698 268 FDMAQCSRC 276 (283)
Q Consensus 268 FDlV~cs~~ 276 (283)
||+|++...
T Consensus 142 ~D~i~~d~~ 150 (226)
T PRK04266 142 VDVIYQDVA 150 (226)
T ss_pred CCEEEECCC
Confidence 999997543
No 109
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.01 E-value=1.3e-05 Score=58.67 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=49.3
Q ss_pred EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH---cC--CCeEEEeccccCCCC-CCCceeeeeeccccc
Q 038698 206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE---RG--VPAVIGVLGTIHLPY-PSRAFDMAQCSRCLI 278 (283)
Q Consensus 206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e---rg--~~a~~~v~da~rLPF-pd~SFDlV~cs~~Li 278 (283)
++||+|||+|.++..+.+.. ...+.+.|.++.+++.+.+ .+ ....+...+....+. ..+.||+|++..++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcccee
Confidence 48999999999999888732 3356778888888776651 12 123344445444443 678899999988874
No 110
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.00 E-value=2.6e-05 Score=73.88 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=49.1
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCCCceeeeeec
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPSRAFDMAQCS 274 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd~SFDlV~cs 274 (283)
.+|||+|||+|.++..|+.+.. ...+.+.|+++.+++.|++. ++. ..+..+|... ++++++||+|+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEEC
Confidence 5899999999999999887632 23567889999998877643 442 4455555422 3456789999997
No 111
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.00 E-value=1.2e-05 Score=72.32 Aligned_cols=72 Identities=22% Similarity=0.224 Sum_probs=58.9
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH----HcCCC--eEEEeccccCCCCCCCceeeeeecccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL----ERGVP--AVIGVLGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~----erg~~--a~~~v~da~rLPFpd~SFDlV~cs~~L 277 (283)
.+|||+|||.|.+...|++.+... .+.|+|.++..|..|. .++.+ +.+.++|...-.|..+.||+|+--..+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 489999999999999999987654 4899999999988764 33666 568888877778999999999865544
No 112
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.99 E-value=1.2e-05 Score=70.61 Aligned_cols=77 Identities=21% Similarity=0.164 Sum_probs=49.4
Q ss_pred hCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC--CeEEEeccccC-CCCCCCce
Q 038698 196 VIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV--PAVIGVLGTIH-LPYPSRAF 268 (283)
Q Consensus 196 ~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~--~a~~~v~da~r-LPFpd~SF 268 (283)
.+.+..+ .+|||+|||+|.++..++..-.....+.++|+++.+++.|+++ ++ ...+...+... ++..++.|
T Consensus 35 ~l~~~~~--~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 35 KLRLRKG--DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HcCCCCc--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 3444334 5899999999999887765311112466778888888776543 42 23344445544 44455789
Q ss_pred eeeeec
Q 038698 269 DMAQCS 274 (283)
Q Consensus 269 DlV~cs 274 (283)
|.|++.
T Consensus 113 D~V~~~ 118 (198)
T PRK00377 113 DRIFIG 118 (198)
T ss_pred CEEEEC
Confidence 999984
No 113
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.97 E-value=1.2e-05 Score=69.90 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=47.0
Q ss_pred HHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCC------
Q 038698 190 IDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLP------ 262 (283)
Q Consensus 190 id~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLP------ 262 (283)
+.++.+.+. +..| .+|||+|||+|.++..++++......+.++|+++.+ ...+ +.+..++...++
T Consensus 20 ~~~~~~~~~~i~~g--~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~--i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 20 LLQLNQKFKLIKPG--DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIEN--VDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred HHHHHHHhcccCCC--CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCC--ceEEEeeCCChhHHHHHH
Confidence 334444443 2334 689999999999988887653211234556666543 1112 333444554443
Q ss_pred --CCCCceeeeeeccc
Q 038698 263 --YPSRAFDMAQCSRC 276 (283)
Q Consensus 263 --Fpd~SFDlV~cs~~ 276 (283)
+++++||+|+|..+
T Consensus 92 ~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 92 ERVGDDKVDVVMSDAA 107 (188)
T ss_pred HHhCCCCccEEEcCCC
Confidence 67889999999653
No 114
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.96 E-value=2.6e-05 Score=72.53 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=55.8
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH 260 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r 260 (283)
+..++.+.+.+... ....+|||+|||+|.++..|+.... ...+.++|+++.+++.|.+. +.. ..+...+...
T Consensus 99 e~lv~~~l~~~~~~-~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 99 EELVEKALASLISQ-NPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE 176 (284)
T ss_pred HHHHHHHHHHhhhc-CCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc
Confidence 44555554433211 1125899999999999998887532 22567889999998877653 443 4455555433
Q ss_pred CCCCCCceeeeeec
Q 038698 261 LPYPSRAFDMAQCS 274 (283)
Q Consensus 261 LPFpd~SFDlV~cs 274 (283)
+++++.||+|+|+
T Consensus 177 -~~~~~~fDlIvsN 189 (284)
T TIGR00536 177 -PLAGQKIDIIVSN 189 (284)
T ss_pred -cCcCCCccEEEEC
Confidence 5666689999996
No 115
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.91 E-value=7.2e-05 Score=68.79 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=55.6
Q ss_pred chhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CCCeEEEeccccC-C
Q 038698 185 GADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GVPAVIGVLGTIH-L 261 (283)
Q Consensus 185 ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~~a~~~v~da~r-L 261 (283)
.+...++.+.+.+.... ...+|||+|||+|.++..|+++.. ...+.++|+++.+++.|++. .....+...|... +
T Consensus 69 ~Te~Lv~~~l~~~~~~~-~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l 146 (251)
T TIGR03704 69 RTEFLVDEAAALARPRS-GTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDAL 146 (251)
T ss_pred cHHHHHHHHHHhhcccC-CCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhc
Confidence 44566776666554221 235899999999999988876521 22457789999988877643 1112334445332 3
Q ss_pred CC-CCCceeeeeecc
Q 038698 262 PY-PSRAFDMAQCSR 275 (283)
Q Consensus 262 PF-pd~SFDlV~cs~ 275 (283)
+- ..+.||+|+++-
T Consensus 147 ~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 147 PTALRGRVDILAANA 161 (251)
T ss_pred chhcCCCEeEEEECC
Confidence 21 135799999874
No 116
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.88 E-value=3.8e-05 Score=71.43 Aligned_cols=88 Identities=22% Similarity=0.301 Sum_probs=59.4
Q ss_pred CCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEe
Q 038698 182 FPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGV 255 (283)
Q Consensus 182 F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v 255 (283)
|.-+.|.- .|...++... ..+|||+|||+|..+-.|++|--. ..+.++++.+++.++|.+. +.. +.+..
T Consensus 27 ~~~~~Dai--LL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~ 101 (248)
T COG4123 27 FRYGTDAI--LLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIE 101 (248)
T ss_pred cccccHHH--HHHhhccccc--CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEeh
Confidence 44455554 5666666533 479999999999999888887322 4678889999988888743 121 33444
Q ss_pred ccccCC--CCCCCceeeeeec
Q 038698 256 LGTIHL--PYPSRAFDMAQCS 274 (283)
Q Consensus 256 ~da~rL--PFpd~SFDlV~cs 274 (283)
+|..++ ++.-.+||+|+|+
T Consensus 102 ~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 102 ADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred hhHHHhhhcccccccCEEEeC
Confidence 564444 2344589999997
No 117
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.86 E-value=3.6e-05 Score=72.73 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=58.1
Q ss_pred HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----C--CCeEEEeccccCC
Q 038698 188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----G--VPAVIGVLGTIHL 261 (283)
Q Consensus 188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g--~~a~~~v~da~rL 261 (283)
..++.|.+.+....+ .+|||||||+|.++..|+++.. .+.++|+++.+++.+.++ + ....+...|+...
T Consensus 23 ~i~~~Iv~~~~~~~~--~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 23 LVLDKIVEKAAIKPT--DTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred HHHHHHHHhcCCCCc--CEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 357778887776544 6899999999999999998743 356778888888877653 2 1244555676555
Q ss_pred CCCCCceeeeeecc
Q 038698 262 PYPSRAFDMAQCSR 275 (283)
Q Consensus 262 PFpd~SFDlV~cs~ 275 (283)
+++ .||+|+++.
T Consensus 98 ~~~--~~d~VvaNl 109 (294)
T PTZ00338 98 EFP--YFDVCVANV 109 (294)
T ss_pred ccc--ccCEEEecC
Confidence 554 689998763
No 118
>PRK00811 spermidine synthase; Provisional
Probab=97.84 E-value=4.5e-05 Score=71.28 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=56.9
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc------C----CCeEEEe
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER------G----VPAVIGV 255 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er------g----~~a~~~v 255 (283)
-.|.+.|....-.....+++|||||||+|..+..++++ ++ ..+..+|+++++++.|++. + ....+..
T Consensus 60 ~~Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~ 137 (283)
T PRK00811 60 FIYHEMMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI 137 (283)
T ss_pred hhHHHHhhhHHHhhCCCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE
Confidence 34665554332222234579999999999999998876 33 2466788888888888753 1 1233444
Q ss_pred ccccC-CCCCCCceeeeeecc
Q 038698 256 LGTIH-LPYPSRAFDMAQCSR 275 (283)
Q Consensus 256 ~da~r-LPFpd~SFDlV~cs~ 275 (283)
.|+.+ ++..+++||+|++-.
T Consensus 138 ~Da~~~l~~~~~~yDvIi~D~ 158 (283)
T PRK00811 138 GDGIKFVAETENSFDVIIVDS 158 (283)
T ss_pred CchHHHHhhCCCcccEEEECC
Confidence 55433 444678999999854
No 119
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.84 E-value=2.6e-05 Score=73.93 Aligned_cols=78 Identities=23% Similarity=0.249 Sum_probs=45.9
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCCeEEEeccccCCCCCC
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVPAVIGVLGTIHLPYPS 265 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~a~~~v~da~rLPFpd 265 (283)
++.|.++... | .+|||||||+|-++..-+..+.. .+.++|+.+..++.|++ .++...+.+.. ...+..
T Consensus 152 l~~l~~~~~~--g--~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~ 223 (295)
T PF06325_consen 152 LELLEKYVKP--G--KRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVE 223 (295)
T ss_dssp HHHHHHHSST--T--SEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCC
T ss_pred HHHHHHhccC--C--CEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--eccccc
Confidence 6666666432 4 69999999999776544444332 24556666666666553 35544443322 334556
Q ss_pred Cceeeeeecc
Q 038698 266 RAFDMAQCSR 275 (283)
Q Consensus 266 ~SFDlV~cs~ 275 (283)
..||+|+++-
T Consensus 224 ~~~dlvvANI 233 (295)
T PF06325_consen 224 GKFDLVVANI 233 (295)
T ss_dssp S-EEEEEEES
T ss_pred ccCCEEEECC
Confidence 9999999874
No 120
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.83 E-value=4.6e-05 Score=75.32 Aligned_cols=76 Identities=11% Similarity=0.043 Sum_probs=52.5
Q ss_pred hhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCCcee
Q 038698 195 SVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSRAFD 269 (283)
Q Consensus 195 ~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~SFD 269 (283)
.++....| .+|||+|||+|..+..|++.--....+.++|+++.+++.+.++ |+. +.+...++..++ ++++||
T Consensus 244 ~~l~~~~g--~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD 320 (445)
T PRK14904 244 LLLNPQPG--STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPD 320 (445)
T ss_pred HhcCCCCC--CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCC
Confidence 44444444 6899999999998877776411122567889999888766533 654 345566777765 678999
Q ss_pred eeee
Q 038698 270 MAQC 273 (283)
Q Consensus 270 lV~c 273 (283)
+|++
T Consensus 321 ~Vl~ 324 (445)
T PRK14904 321 AILL 324 (445)
T ss_pred EEEE
Confidence 9994
No 121
>PRK04148 hypothetical protein; Provisional
Probab=97.82 E-value=6e-05 Score=64.11 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=55.8
Q ss_pred HHHHhhCCCCCCCccEEeecCCCccH-HHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCC-CCce
Q 038698 191 DELASVIPIKDGSVRTALDTGCGVAS-WGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYP-SRAF 268 (283)
Q Consensus 191 d~I~~~l~~~~g~~r~VLDVGCGtGs-faa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFp-d~SF 268 (283)
+.|.+.++...+ .++||||||.|. ++..|.+.+. ++.++|+++..++.|.+.++.+... |..+-++. -..+
T Consensus 6 ~~l~~~~~~~~~--~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~d--Dlf~p~~~~y~~a 78 (134)
T PRK04148 6 EFIAENYEKGKN--KKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVD--DLFNPNLEIYKNA 78 (134)
T ss_pred HHHHHhcccccC--CEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEEC--cCCCCCHHHHhcC
Confidence 345555554333 689999999995 8888988764 5567899999999998888766554 54444443 4668
Q ss_pred eeeeeccc
Q 038698 269 DMAQCSRC 276 (283)
Q Consensus 269 DlV~cs~~ 276 (283)
|+|.+-+.
T Consensus 79 ~liysirp 86 (134)
T PRK04148 79 KLIYSIRP 86 (134)
T ss_pred CEEEEeCC
Confidence 88877653
No 122
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.79 E-value=4.5e-05 Score=75.42 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=56.1
Q ss_pred HHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC-CCCC
Q 038698 193 LASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP-YPSR 266 (283)
Q Consensus 193 I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP-Fpd~ 266 (283)
+..++....| .+|||+|||+|..+.+|++.--....+.++|+++.+++.+.++ |+. +.+..+|+..++ +.++
T Consensus 229 ~~~~l~~~~g--~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~ 306 (431)
T PRK14903 229 VPLLMELEPG--LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQD 306 (431)
T ss_pred HHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhc
Confidence 3444555445 5899999999998888877521123567789999888776533 654 346667887777 6788
Q ss_pred ceeeeee
Q 038698 267 AFDMAQC 273 (283)
Q Consensus 267 SFDlV~c 273 (283)
+||.|++
T Consensus 307 ~fD~Vl~ 313 (431)
T PRK14903 307 TFDRILV 313 (431)
T ss_pred cCCEEEE
Confidence 9999986
No 123
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.79 E-value=5.4e-05 Score=74.62 Aligned_cols=80 Identities=14% Similarity=0.024 Sum_probs=55.9
Q ss_pred HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC----
Q 038698 192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP---- 262 (283)
Q Consensus 192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP---- 262 (283)
.+...+....| .+|||+|||+|..+..|++..-....+.++|+++.+++.+.++ |+. +.+..+|+..++
T Consensus 243 l~~~~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~ 320 (434)
T PRK14901 243 LVAPLLDPQPG--EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP 320 (434)
T ss_pred HHHHHhCCCCc--CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc
Confidence 34455555445 5899999999999988887521122467789998887766432 654 445566777776
Q ss_pred CCCCceeeeee
Q 038698 263 YPSRAFDMAQC 273 (283)
Q Consensus 263 Fpd~SFDlV~c 273 (283)
+.+++||.|++
T Consensus 321 ~~~~~fD~Vl~ 331 (434)
T PRK14901 321 QWRGYFDRILL 331 (434)
T ss_pred cccccCCEEEE
Confidence 66889999995
No 124
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.79 E-value=5.8e-05 Score=74.16 Aligned_cols=79 Identities=15% Similarity=0.080 Sum_probs=55.0
Q ss_pred HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEE--EeccccCCCC--
Q 038698 192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVI--GVLGTIHLPY-- 263 (283)
Q Consensus 192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~--~v~da~rLPF-- 263 (283)
.+...+....| .+|||+|||+|..+..|++..- ...+.++|+++.+++.+.++ |+...+ ..++...+++
T Consensus 229 ~~~~~L~~~~g--~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 229 WVATWLAPQNE--ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHhCCCCC--CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence 45556665555 6899999999999988887522 23577889999888766533 555333 4445555555
Q ss_pred CCCceeeeee
Q 038698 264 PSRAFDMAQC 273 (283)
Q Consensus 264 pd~SFDlV~c 273 (283)
++++||.|++
T Consensus 306 ~~~~fD~Vll 315 (426)
T TIGR00563 306 ENEQFDRILL 315 (426)
T ss_pred cccccCEEEE
Confidence 6789999984
No 125
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.79 E-value=6.5e-05 Score=72.08 Aligned_cols=89 Identities=18% Similarity=0.243 Sum_probs=57.0
Q ss_pred chhHHHHHHHhhCCCC------CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---C--CCeE-
Q 038698 185 GADAYIDELASVIPIK------DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---G--VPAV- 252 (283)
Q Consensus 185 ga~~Yid~I~~~l~~~------~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---g--~~a~- 252 (283)
+.-.||..|.++|... .|...+|||||||+|.....|..+.. ...+.+.|+++..++.|++. . +...
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 3567888888876431 23446899999999988877776522 23567889988888877632 2 3211
Q ss_pred -EE-eccccCC----CCCCCceeeeeec
Q 038698 253 -IG-VLGTIHL----PYPSRAFDMAQCS 274 (283)
Q Consensus 253 -~~-v~da~rL----PFpd~SFDlV~cs 274 (283)
+. +.+...+ -.+++.||+|+|+
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCN 196 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeC
Confidence 21 1122222 1357799999997
No 126
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.78 E-value=4.6e-05 Score=74.64 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=57.3
Q ss_pred HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccC--
Q 038698 188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIH-- 260 (283)
Q Consensus 188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~r-- 260 (283)
...+.+.+++....+ .+|||+|||+|.++..|++... .+.++|+++.+++.|++. ++. +.+..+++..
T Consensus 279 ~l~~~~~~~l~~~~~--~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 279 KLVDRALEALELQGE--ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHhccCCC--CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence 345566666654333 5899999999999999987632 456788888888877642 443 4455556433
Q ss_pred --CCCCCCceeeeeec
Q 038698 261 --LPYPSRAFDMAQCS 274 (283)
Q Consensus 261 --LPFpd~SFDlV~cs 274 (283)
+++.+++||+|+..
T Consensus 354 ~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLD 369 (431)
T ss_pred HHHHhcCCCCCEEEEC
Confidence 45667889999864
No 127
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=9.2e-05 Score=69.44 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=45.9
Q ss_pred EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCe-EEEeccccCC-CCCCCceeeeeecc
Q 038698 206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPA-VIGVLGTIHL-PYPSRAFDMAQCSR 275 (283)
Q Consensus 206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a-~~~v~da~rL-PFpd~SFDlV~cs~ 275 (283)
+|||+|||+|..+..|+.+... ..+.+.|+++..++.|++. |+.. .+...+ -+ +.. +.||+|+|+-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~d--lf~~~~-~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSD--LFEPLR-GKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeee--cccccC-CceeEEEeCC
Confidence 7999999999999999987543 3577889999998888643 5321 222111 11 223 3899999973
No 128
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.74 E-value=1.8e-05 Score=72.45 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=51.5
Q ss_pred EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-----CCCeE-EEeccccCCC-CCCCceeeeeecccc
Q 038698 206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-----GVPAV-IGVLGTIHLP-YPSRAFDMAQCSRCL 277 (283)
Q Consensus 206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-----g~~a~-~~v~da~rLP-Fpd~SFDlV~cs~~L 277 (283)
.+|.||||||..-.++.-.. .-+++.+|.++.|.++|.++ ..... +.+++.++|| .+|+|+|+|+|..||
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p--~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKP--INSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ceEEecccCCCCcccccCCC--CceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 58999999998766655321 22456777777776665432 23333 7788999999 999999999999887
No 129
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.73 E-value=9e-05 Score=73.10 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=55.2
Q ss_pred HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCC--C
Q 038698 191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLP--Y 263 (283)
Q Consensus 191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLP--F 263 (283)
..+...+....| .+|||+|||+|.++..|+++--....+.++|+++.+++.+.++ |+. +.+..+|+..++ +
T Consensus 240 ~lv~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 240 MLVAPALDPKGG--DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHHhCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh
Confidence 345555655444 6899999999999988887521123567889998888776542 554 345556766653 4
Q ss_pred CCCceeeeeec
Q 038698 264 PSRAFDMAQCS 274 (283)
Q Consensus 264 pd~SFDlV~cs 274 (283)
+ ++||+|++.
T Consensus 318 ~-~~fD~Vl~D 327 (444)
T PRK14902 318 A-EKFDKILVD 327 (444)
T ss_pred c-ccCCEEEEc
Confidence 4 889999964
No 130
>PTZ00146 fibrillarin; Provisional
Probab=97.70 E-value=6.5e-05 Score=71.39 Aligned_cols=79 Identities=14% Similarity=-0.017 Sum_probs=48.8
Q ss_pred CCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHH----HHHHHHHcCCCeEEEeccccC---CCCCCCceee
Q 038698 198 PIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEA----QVQFALERGVPAVIGVLGTIH---LPYPSRAFDM 270 (283)
Q Consensus 198 ~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a----~vq~A~erg~~a~~~v~da~r---LPFpd~SFDl 270 (283)
++..| .+|||+|||+|+++..|++.--..-.+..+|+++. ++..|.++ .++.....|+.. ++++..+||+
T Consensus 129 ~IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 129 PIKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred ccCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCE
Confidence 44455 68999999999999999986211113455677764 44555554 222333345432 2334568999
Q ss_pred eeeccccccc
Q 038698 271 AQCSRCLIPW 280 (283)
Q Consensus 271 V~cs~~Li~W 280 (283)
|++..+ .+|
T Consensus 206 V~~Dva-~pd 214 (293)
T PTZ00146 206 IFADVA-QPD 214 (293)
T ss_pred EEEeCC-Ccc
Confidence 999765 355
No 131
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.69 E-value=7.9e-05 Score=68.77 Aligned_cols=76 Identities=8% Similarity=0.029 Sum_probs=53.1
Q ss_pred hCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCCceee
Q 038698 196 VIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSRAFDM 270 (283)
Q Consensus 196 ~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~SFDl 270 (283)
.+....| .+|||+|||+|..+..|++.--....+.++|+++.+++.+.++ |+. +.+...|+..++...+.||.
T Consensus 66 ~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 66 ALEPDPP--ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred HhCCCCc--CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCE
Confidence 4444445 5899999999999988877421112467789999888766532 553 34555677777777778999
Q ss_pred eee
Q 038698 271 AQC 273 (283)
Q Consensus 271 V~c 273 (283)
|++
T Consensus 144 Vl~ 146 (264)
T TIGR00446 144 ILL 146 (264)
T ss_pred EEE
Confidence 985
No 132
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.68 E-value=0.00018 Score=64.39 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=60.2
Q ss_pred cCCeeeeCCCCCCCCCchhHHHHHHHhhCCC-CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc
Q 038698 169 QGNVFKFPGGGTMFPQGADAYIDELASVIPI-KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER 247 (283)
Q Consensus 169 ~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~-~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er 247 (283)
.|-++..|.+... --..+.-.+.+.+++.. ..+ .+|||+|||+|+++..++.++. ..+.++|.+++.++.|.+.
T Consensus 21 ~g~~l~~~~~~~~-Rp~~d~v~e~l~~~l~~~~~~--~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~N 95 (199)
T PRK10909 21 RGRKLPVPDSPGL-RPTTDRVRETLFNWLAPVIVD--ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKN 95 (199)
T ss_pred CCCEeCCCCCCCc-CcCCHHHHHHHHHHHhhhcCC--CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHH
Confidence 3455666664322 22344445555665542 233 5899999999999986555543 2466778888777655432
Q ss_pred ----CC-CeEEEeccccC-CCCCCCceeeeeec
Q 038698 248 ----GV-PAVIGVLGTIH-LPYPSRAFDMAQCS 274 (283)
Q Consensus 248 ----g~-~a~~~v~da~r-LPFpd~SFDlV~cs 274 (283)
++ .+.+...|+.. |+..+.+||+|++.
T Consensus 96 l~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 96 LATLKAGNARVVNTNALSFLAQPGTPHNVVFVD 128 (199)
T ss_pred HHHhCCCcEEEEEchHHHHHhhcCCCceEEEEC
Confidence 43 23444455433 44345679999975
No 133
>PRK01581 speE spermidine synthase; Validated
Probab=97.68 E-value=0.00012 Score=71.72 Aligned_cols=122 Identities=14% Similarity=0.072 Sum_probs=75.4
Q ss_pred ceeeecccCCchhhhhhhhcCceeecCCeeeeCCCCCCCCCch-hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHh
Q 038698 144 DYVHYANVPHKSLTVEKAVQNWVQFQGNVFKFPGGGTMFPQGA-DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLL 222 (283)
Q Consensus 144 ~~~W~~n~p~~~L~~~k~~q~w~~~~~~~~~Fpgggt~F~~ga-~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~ 222 (283)
+++-+..-||..+....... + ..|=.|-.||...- -.|.+.|....-.....+++||+||||+|..++.++
T Consensus 98 ~vl~~~~S~yQ~I~I~et~~-~-------~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelL 169 (374)
T PRK01581 98 TNLFAEKSNYQNINLLQVSD-I-------RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVL 169 (374)
T ss_pred CEEEecCCCCceEEEEEcCC-E-------EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHH
Confidence 45555566777765443222 1 23334444554322 457777776432223456899999999999888888
Q ss_pred hcCCeeEeeccccChHHHHHHHHHc------------CCCeEEEeccccC-CCCCCCceeeeeec
Q 038698 223 KRNVLTMSFAPRDNHEAQVQFALER------------GVPAVIGVLGTIH-LPYPSRAFDMAQCS 274 (283)
Q Consensus 223 ~r~v~~~sla~~D~s~a~vq~A~er------------g~~a~~~v~da~r-LPFpd~SFDlV~cs 274 (283)
++. ....+..+|+++++++.|++. .....+.+.|+.+ |+-.++.||+|++.
T Consensus 170 k~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvD 233 (374)
T PRK01581 170 KYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIID 233 (374)
T ss_pred hcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEc
Confidence 763 223567789999999998851 1123344455443 45567889999986
No 134
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.66 E-value=0.00018 Score=65.96 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=56.3
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH-----------------cCCCeEEEeccccCCCCCC--
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE-----------------RGVPAVIGVLGTIHLPYPS-- 265 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e-----------------rg~~a~~~v~da~rLPFpd-- 265 (283)
.+||+.|||.|.-+.+|++++. ++.++|+|+..++.+.+ ++..+.+.++|...|+...
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 5899999999999999999865 45688999988877543 2345567788888887532
Q ss_pred -Cceeeeeecccccc
Q 038698 266 -RAFDMAQCSRCLIP 279 (283)
Q Consensus 266 -~SFDlV~cs~~Li~ 279 (283)
+.||+|+=..+++.
T Consensus 122 ~~~fD~VyDra~~~A 136 (226)
T PRK13256 122 LPVFDIWYDRGAYIA 136 (226)
T ss_pred cCCcCeeeeehhHhc
Confidence 68999988877754
No 135
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.62 E-value=8.4e-05 Score=75.02 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=47.7
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCCCceeeeeecc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPSRAFDMAQCSR 275 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd~SFDlV~cs~ 275 (283)
.+|||+|||+|.++..|+.+.. ...+.++|+++.+++.|.+. ++. +.+...+... ++++++||+|+|+-
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNP 214 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNP 214 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECC
Confidence 5899999999999988876521 23567789999888887653 432 3333344321 34567999999963
No 136
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.54 E-value=0.00026 Score=61.79 Aligned_cols=79 Identities=15% Similarity=0.023 Sum_probs=48.2
Q ss_pred HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccC-CCCCC
Q 038698 192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIH-LPYPS 265 (283)
Q Consensus 192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~r-LPFpd 265 (283)
.+.+.+....+ .+|||+|||+|.++..+++... ...+.++|.++.+++.|.++ +.. ..+...++.. ++...
T Consensus 31 ~l~~~l~~~~~--~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 31 LLISQLRLEPD--SVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC
Confidence 45566665444 6899999999999888875421 23567788888888777542 443 3344445432 33323
Q ss_pred Cceeeeee
Q 038698 266 RAFDMAQC 273 (283)
Q Consensus 266 ~SFDlV~c 273 (283)
..+|.|+.
T Consensus 108 ~~~d~v~~ 115 (196)
T PRK07402 108 PAPDRVCI 115 (196)
T ss_pred CCCCEEEE
Confidence 34566544
No 137
>PRK03612 spermidine synthase; Provisional
Probab=97.51 E-value=0.00021 Score=72.32 Aligned_cols=87 Identities=16% Similarity=0.048 Sum_probs=56.7
Q ss_pred HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-C-----------CCeEEEe
Q 038698 188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-G-----------VPAVIGV 255 (283)
Q Consensus 188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-g-----------~~a~~~v 255 (283)
.|.+.+....-....+.++|||||||+|..+..++++.. ...+..+|+++++++.|++. . ....+..
T Consensus 282 ~y~e~l~~~~l~~~~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~ 360 (521)
T PRK03612 282 RYHEALVHPAMAASARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVN 360 (521)
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEE
Confidence 466665542111112457899999999999988887632 13567789999999998872 0 1233444
Q ss_pred ccccC-CCCCCCceeeeeecc
Q 038698 256 LGTIH-LPYPSRAFDMAQCSR 275 (283)
Q Consensus 256 ~da~r-LPFpd~SFDlV~cs~ 275 (283)
.|+.+ +.-.+++||+|++..
T Consensus 361 ~Da~~~l~~~~~~fDvIi~D~ 381 (521)
T PRK03612 361 DDAFNWLRKLAEKFDVIIVDL 381 (521)
T ss_pred ChHHHHHHhCCCCCCEEEEeC
Confidence 55443 344457999999873
No 138
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00052 Score=61.88 Aligned_cols=83 Identities=18% Similarity=0.061 Sum_probs=47.9
Q ss_pred hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEeccccCC
Q 038698 186 ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVLGTIHL 261 (283)
Q Consensus 186 a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~da~rL 261 (283)
...|+-.++.+-....| ++|||+|||||.++--.+-.+.. .+.++|+.+++++.+++. +....+.++|+.+
T Consensus 30 ~Aa~il~~a~~~g~l~g--~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~- 104 (198)
T COG2263 30 LAAYILWVAYLRGDLEG--KTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSD- 104 (198)
T ss_pred HHHHHHHHHHHcCCcCC--CEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhh-
Confidence 34454444444444344 68999999999765433322221 245567777777766532 2345566666655
Q ss_pred CCCCCceeeeeecc
Q 038698 262 PYPSRAFDMAQCSR 275 (283)
Q Consensus 262 PFpd~SFDlV~cs~ 275 (283)
.+.-||.|+.+-
T Consensus 105 --~~~~~dtvimNP 116 (198)
T COG2263 105 --FRGKFDTVIMNP 116 (198)
T ss_pred --cCCccceEEECC
Confidence 345577776653
No 139
>PRK04457 spermidine synthase; Provisional
Probab=97.50 E-value=0.00019 Score=66.53 Aligned_cols=85 Identities=9% Similarity=0.084 Sum_probs=56.4
Q ss_pred HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-CC-----CeEEEeccccC-
Q 038698 188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-GV-----PAVIGVLGTIH- 260 (283)
Q Consensus 188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-g~-----~a~~~v~da~r- 260 (283)
.|.+.|...+... ..+++|||||||+|+++.+|+++.. ...+..+|++++.++.|++. +. ...+...|+..
T Consensus 52 ~y~~~m~~~l~~~-~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 52 AYTRAMMGFLLFN-PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY 129 (262)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH
Confidence 4777665444322 2347899999999999998887632 34577889999999988865 22 13344455322
Q ss_pred CCCCCCceeeeeec
Q 038698 261 LPYPSRAFDMAQCS 274 (283)
Q Consensus 261 LPFpd~SFDlV~cs 274 (283)
++-..++||+|++.
T Consensus 130 l~~~~~~yD~I~~D 143 (262)
T PRK04457 130 IAVHRHSTDVILVD 143 (262)
T ss_pred HHhCCCCCCEEEEe
Confidence 23234689999974
No 140
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.48 E-value=0.00022 Score=68.65 Aligned_cols=73 Identities=27% Similarity=0.265 Sum_probs=46.2
Q ss_pred CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------------CCeEEEecccc------CC
Q 038698 203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------------VPAVIGVLGTI------HL 261 (283)
Q Consensus 203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------------~~a~~~v~da~------rL 261 (283)
...+|||+|||-|.-.......++. .+.++|++...|+.|.+|. ..+.+..+|.. .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~--~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK--HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 3479999999988755555555443 4678999999999988775 23444444422 33
Q ss_pred CCCCCceeeeeecccc
Q 038698 262 PYPSRAFDMAQCSRCL 277 (283)
Q Consensus 262 PFpd~SFDlV~cs~~L 277 (283)
+.....||+|-|.-++
T Consensus 140 ~~~~~~FDvVScQFal 155 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFAL 155 (331)
T ss_dssp SSTTS-EEEEEEES-G
T ss_pred cccCCCcceeehHHHH
Confidence 4445699999998876
No 141
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.47 E-value=0.00021 Score=69.32 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=60.8
Q ss_pred CCeeeeCCCCCCCCCchhHH----HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH
Q 038698 170 GNVFKFPGGGTMFPQGADAY----IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL 245 (283)
Q Consensus 170 ~~~~~Fpgggt~F~~ga~~Y----id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~ 245 (283)
|-+|.++. ..|.+-...- .+.+.+++....+ .+|||+|||+|.++..|+.++. .+.++|+++.+++.|+
T Consensus 200 g~~~~~~~--~~F~Q~n~~~~~~l~~~~~~~l~~~~~--~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~ 272 (374)
T TIGR02085 200 DVPLVIRP--QSFFQTNPKVAAQLYATARQWVREIPV--TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQ 272 (374)
T ss_pred CEEEEECC--CccccCCHHHHHHHHHHHHHHHHhcCC--CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHH
Confidence 43566654 3465433332 3444444432223 5899999999999999987642 4678888888888776
Q ss_pred Hc----CC-CeEEEeccccCC-CCCCCceeeeeec
Q 038698 246 ER----GV-PAVIGVLGTIHL-PYPSRAFDMAQCS 274 (283)
Q Consensus 246 er----g~-~a~~~v~da~rL-PFpd~SFDlV~cs 274 (283)
+. ++ .+.+..+++..+ +-..+.||+|+..
T Consensus 273 ~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 273 QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 42 44 344655665442 2122469999864
No 142
>PLN02366 spermidine synthase
Probab=97.46 E-value=0.00061 Score=64.94 Aligned_cols=122 Identities=8% Similarity=0.055 Sum_probs=68.5
Q ss_pred ceeeecccCCchhhhhhhhc--CceeecCCeeeeCCCCCCCCCc-hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHH
Q 038698 144 DYVHYANVPHKSLTVEKAVQ--NWVQFQGNVFKFPGGGTMFPQG-ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAY 220 (283)
Q Consensus 144 ~~~W~~n~p~~~L~~~k~~q--~w~~~~~~~~~Fpgggt~F~~g-a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~ 220 (283)
.++....-+|.++...+... +++.++|. + ++... .-.|.+.|..+.-.....+++|||||||.|..+..
T Consensus 37 ~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~-~-------q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~re 108 (308)
T PLN02366 37 KVLFQGKSDFQDVLVFESATYGKVLVLDGV-I-------QLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLRE 108 (308)
T ss_pred eEEEeccCCCeeEEEEEcCCCceEEEECCE-e-------eecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHH
Confidence 45555666777655433222 33444433 2 22222 23566655543111122457999999999999999
Q ss_pred HhhcCCeeEeeccccChHHHHHHHHHcC---------CCeEEEeccccC-C-CCCCCceeeeeec
Q 038698 221 LLKRNVLTMSFAPRDNHEAQVQFALERG---------VPAVIGVLGTIH-L-PYPSRAFDMAQCS 274 (283)
Q Consensus 221 L~~r~v~~~sla~~D~s~a~vq~A~erg---------~~a~~~v~da~r-L-PFpd~SFDlV~cs 274 (283)
|+++. ....+..+|+++..++.|++.- ....+..+|+.. + ..+++.||+|++-
T Consensus 109 llk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D 172 (308)
T PLN02366 109 IARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVD 172 (308)
T ss_pred HHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEc
Confidence 98862 2224556677788888876531 123344445321 1 1246789999984
No 143
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00038 Score=63.33 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=55.7
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCC
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPY 263 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPF 263 (283)
-.-.+.+.|.++.| .+||+||||+|+.+|.|++..-.+ ..++..++..++|+++ |. ++.+..+|. ..=+
T Consensus 60 ~vA~m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~~V---~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG-~~G~ 133 (209)
T COG2518 60 MVARMLQLLELKPG--DRVLEIGTGSGYQAAVLARLVGRV---VSIERIEELAEQARRNLETLGYENVTVRHGDG-SKGW 133 (209)
T ss_pred HHHHHHHHhCCCCC--CeEEEECCCchHHHHHHHHHhCeE---EEEEEcHHHHHHHHHHHHHcCCCceEEEECCc-ccCC
Confidence 45567777877766 699999999999999999863333 3345555666666432 55 444555553 3344
Q ss_pred CC-Cceeeeeecccc
Q 038698 264 PS-RAFDMAQCSRCL 277 (283)
Q Consensus 264 pd-~SFDlV~cs~~L 277 (283)
+. .-||.|+.+.+.
T Consensus 134 ~~~aPyD~I~Vtaaa 148 (209)
T COG2518 134 PEEAPYDRIIVTAAA 148 (209)
T ss_pred CCCCCcCEEEEeecc
Confidence 44 789999987653
No 144
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.44 E-value=0.00045 Score=63.91 Aligned_cols=88 Identities=15% Similarity=0.093 Sum_probs=53.2
Q ss_pred HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------CCeEEEeccc
Q 038698 188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------VPAVIGVLGT 258 (283)
Q Consensus 188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------~~a~~~v~da 258 (283)
.|.+.|..+--.....+++|||||||+|.++..++++.. ...+..+|++++.++.|.+.- ....+...|+
T Consensus 57 ~y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~ 135 (270)
T TIGR00417 57 IYHEMIAHVPLFTHPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG 135 (270)
T ss_pred HHHHHhhhhHhhcCCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch
Confidence 466555443212223457999999999999988877641 234567788888887776531 1122333343
Q ss_pred cC-CCCCCCceeeeeeccc
Q 038698 259 IH-LPYPSRAFDMAQCSRC 276 (283)
Q Consensus 259 ~r-LPFpd~SFDlV~cs~~ 276 (283)
.+ |.-.+++||+|++...
T Consensus 136 ~~~l~~~~~~yDvIi~D~~ 154 (270)
T TIGR00417 136 FKFLADTENTFDVIIVDST 154 (270)
T ss_pred HHHHHhCCCCccEEEEeCC
Confidence 21 2233579999998543
No 145
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.37 E-value=0.00056 Score=50.37 Aligned_cols=71 Identities=24% Similarity=0.323 Sum_probs=44.5
Q ss_pred EeecCCCccHHH--HHHhhcCCeeEeeccccChHHHHHHHHHcC--C--C-eEEEeccccC--CCCCC-Cceeeeeeccc
Q 038698 207 ALDTGCGVASWG--AYLLKRNVLTMSFAPRDNHEAQVQFALERG--V--P-AVIGVLGTIH--LPYPS-RAFDMAQCSRC 276 (283)
Q Consensus 207 VLDVGCGtGsfa--a~L~~r~v~~~sla~~D~s~a~vq~A~erg--~--~-a~~~v~da~r--LPFpd-~SFDlV~cs~~ 276 (283)
+||+|||+|... ..+.... ..+.+.|.+..++..+.... . . ..+...+... +||.+ ..||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRG---AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCC---ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999854 3333322 12344788887776644332 1 1 2344445554 89998 599999 7777
Q ss_pred ccccc
Q 038698 277 LIPWT 281 (283)
Q Consensus 277 Li~W~ 281 (283)
...|.
T Consensus 128 ~~~~~ 132 (257)
T COG0500 128 VLHLL 132 (257)
T ss_pred ehhcC
Confidence 65543
No 146
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.19 E-value=0.00052 Score=62.78 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=30.2
Q ss_pred cEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeecccc
Q 038698 205 RTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~L 277 (283)
.+|-|+|||++.++..+.+. .|...|+... +. .+...|+..+|++|++.|+|++...|
T Consensus 74 ~viaD~GCGdA~la~~~~~~~~V~SfDLva~-------------n~--~Vtacdia~vPL~~~svDv~VfcLSL 132 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPNKHKVHSFDLVAP-------------NP--RVTACDIANVPLEDESVDVAVFCLSL 132 (219)
T ss_dssp S-EEEES-TT-HHHHH--S---EEEEESS-S-------------ST--TEEES-TTS-S--TT-EEEEEEES--
T ss_pred EEEEECCCchHHHHHhcccCceEEEeeccCC-------------CC--CEEEecCccCcCCCCceeEEEEEhhh
Confidence 68999999999999776542 2333333221 11 23445889999999999999997766
No 147
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.12 E-value=0.0016 Score=58.43 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=54.7
Q ss_pred HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceee
Q 038698 191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDM 270 (283)
Q Consensus 191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDl 270 (283)
+.+.+.... .+.++|||||+|.|.++..++++... +.+.-.|+ +..++.+.+ .-...+..+|.. =|+|. +|+
T Consensus 90 ~~~~~~~d~--~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~ 161 (241)
T PF00891_consen 90 DILLEAFDF--SGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADV 161 (241)
T ss_dssp HHHHHHSTT--TTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESE
T ss_pred hhhhccccc--cCccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccc
Confidence 444455554 34579999999999999999886332 13344565 445666665 333555555665 67887 999
Q ss_pred eeeccccccccc
Q 038698 271 AQCSRCLIPWTS 282 (283)
Q Consensus 271 V~cs~~Li~W~~ 282 (283)
|+.+++|-.|..
T Consensus 162 ~~l~~vLh~~~d 173 (241)
T PF00891_consen 162 YLLRHVLHDWSD 173 (241)
T ss_dssp EEEESSGGGS-H
T ss_pred eeeehhhhhcch
Confidence 999999998863
No 148
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.09 E-value=0.0015 Score=57.13 Aligned_cols=81 Identities=22% Similarity=0.248 Sum_probs=51.4
Q ss_pred HHHhhCCCCCCCccEEeecCCCccHHHH--HHhhcCCe------eEeeccccChHHHHHHHHHc----CCC--eEEEecc
Q 038698 192 ELASVIPIKDGSVRTALDTGCGVASWGA--YLLKRNVL------TMSFAPRDNHEAQVQFALER----GVP--AVIGVLG 257 (283)
Q Consensus 192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa--~L~~r~v~------~~sla~~D~s~a~vq~A~er----g~~--a~~~v~d 257 (283)
.|..+.....+ .++||-=||+|++.. .|...++. ...+.+.|+++.+++.|++. |+. ..+...|
T Consensus 19 ~ll~la~~~~~--~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 19 ALLNLAGWRPG--DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHTT--TT--S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHhCCCCC--CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 45555555444 689999999999873 23333332 12256889999888877532 543 4566778
Q ss_pred ccCCCCCCCceeeeeec
Q 038698 258 TIHLPYPSRAFDMAQCS 274 (283)
Q Consensus 258 a~rLPFpd~SFDlV~cs 274 (283)
+.+||+.++++|.|+|.
T Consensus 97 ~~~l~~~~~~~d~Ivtn 113 (179)
T PF01170_consen 97 ARELPLPDGSVDAIVTN 113 (179)
T ss_dssp GGGGGGTTSBSCEEEEE
T ss_pred hhhcccccCCCCEEEEC
Confidence 99999999999999986
No 149
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.05 E-value=0.0016 Score=68.19 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=48.1
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC---eEEEeccccC-CCCCCCceeeeeec
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP---AVIGVLGTIH-LPYPSRAFDMAQCS 274 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~---a~~~v~da~r-LPFpd~SFDlV~cs 274 (283)
++|||+|||+|.|+..++..+.. .+..+|+++.+++.|.+. ++. ..+..+|+.. |.-..++||+|++.
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 68999999999999999987542 467789999888877643 443 3455556422 21115789999984
No 150
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.02 E-value=0.0012 Score=58.65 Aligned_cols=75 Identities=25% Similarity=0.332 Sum_probs=47.0
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH----HcCCCe-EEEeccccC-CC--CCCCceeeeeeccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL----ERGVPA-VIGVLGTIH-LP--YPSRAFDMAQCSRC 276 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~----erg~~a-~~~v~da~r-LP--Fpd~SFDlV~cs~~ 276 (283)
..+||||||.|.|...|+.+... ..+.|+|+....+..|. ++++++ .+..+++.. |+ ++++++|.|+-.--
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 48999999999999999987543 24667777777665554 346654 455556555 33 57899999986433
Q ss_pred ccccc
Q 038698 277 LIPWT 281 (283)
Q Consensus 277 Li~W~ 281 (283)
= ||.
T Consensus 98 D-PWp 101 (195)
T PF02390_consen 98 D-PWP 101 (195)
T ss_dssp -----
T ss_pred C-CCc
Confidence 2 553
No 151
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.01 E-value=0.0024 Score=57.98 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=52.4
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH-cCC-------C---------eEEEeccccCCCCCC-C
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE-RGV-------P---------AVIGVLGTIHLPYPS-R 266 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e-rg~-------~---------a~~~v~da~rLPFpd-~ 266 (283)
.+||+.|||.|.-+.+|++++. ++.++|+++..++.|.+ .+. . ..+.++|...|+-.+ +
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 6899999999999999999864 56789999999988743 333 1 134566777776544 4
Q ss_pred ceeeeeeccccc
Q 038698 267 AFDMAQCSRCLI 278 (283)
Q Consensus 267 SFDlV~cs~~Li 278 (283)
.||+|+=..+|+
T Consensus 116 ~fD~iyDr~~l~ 127 (218)
T PF05724_consen 116 KFDLIYDRTFLC 127 (218)
T ss_dssp SEEEEEECSSTT
T ss_pred CceEEEEecccc
Confidence 899999887774
No 152
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.96 E-value=0.0033 Score=56.43 Aligned_cols=76 Identities=17% Similarity=0.098 Sum_probs=43.7
Q ss_pred HHhhCCCCCCCccEEeecCCCccHHHHHHhh--cCCeeEeeccccChHHH---HHHHHHc-CCCeE-EEecc-ccCCCCC
Q 038698 193 LASVIPIKDGSVRTALDTGCGVASWGAYLLK--RNVLTMSFAPRDNHEAQ---VQFALER-GVPAV-IGVLG-TIHLPYP 264 (283)
Q Consensus 193 I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~--r~v~~~sla~~D~s~a~---vq~A~er-g~~a~-~~v~d-a~rLPFp 264 (283)
....|.+.+| .+++|||||||+.+..++. ....+ ..+|-.++. ++..+++ |+++. +..++ -+.|+=.
T Consensus 26 ~ls~L~~~~g--~~l~DIGaGtGsi~iE~a~~~p~~~v---~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~ 100 (187)
T COG2242 26 TLSKLRPRPG--DRLWDIGAGTGSITIEWALAGPSGRV---IAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL 100 (187)
T ss_pred HHHhhCCCCC--CEEEEeCCCccHHHHHHHHhCCCceE---EEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC
Confidence 3344555556 5999999999999988773 22333 344444444 3444444 76544 33333 2344422
Q ss_pred CCceeeeeec
Q 038698 265 SRAFDMAQCS 274 (283)
Q Consensus 265 d~SFDlV~cs 274 (283)
+ +||.|+-.
T Consensus 101 ~-~~daiFIG 109 (187)
T COG2242 101 P-SPDAIFIG 109 (187)
T ss_pred C-CCCEEEEC
Confidence 2 79988754
No 153
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=96.85 E-value=0.0025 Score=58.04 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=49.9
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIH 260 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~r 260 (283)
..++..+.++.+ .++|||+|||+|+-+..|+..-.....+..+|.+++.++.|++. |+. ..+..+++..
T Consensus 57 g~~L~~l~~~~~-----~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~ 131 (234)
T PLN02781 57 GLFLSMLVKIMN-----AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHHHhC-----CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH
Confidence 445555555543 36899999999987666665311122466678888777766532 543 3344444322
Q ss_pred -CC-----CCCCceeeeeec
Q 038698 261 -LP-----YPSRAFDMAQCS 274 (283)
Q Consensus 261 -LP-----Fpd~SFDlV~cs 274 (283)
|+ .++.+||+|+.-
T Consensus 132 ~L~~l~~~~~~~~fD~VfiD 151 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVD 151 (234)
T ss_pred HHHHHHhCCCCCCCCEEEEC
Confidence 22 235789999864
No 154
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.81 E-value=0.0065 Score=59.32 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=41.7
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeeccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRC 276 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~ 276 (283)
.++||+||++|.|+.+|++++.. +.++|..+ +.-.+.....+.....+..+..-+.+.+|+|+|-.+
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~~---V~AVD~g~--l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGMF---VTAVDNGP--MAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCCE---EEEEechh--cCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 68999999999999999999753 34455322 111122222344444454443223778999999644
No 155
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.80 E-value=0.0049 Score=58.66 Aligned_cols=80 Identities=21% Similarity=0.232 Sum_probs=50.4
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--CCC--eEEEeccccCCCCCC
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER--GVP--AVIGVLGTIHLPYPS 265 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er--g~~--a~~~v~da~rLPFpd 265 (283)
+++|.+-.+++.+ .+||.||-|||.++..|++.+.+++. .++.+.++..-.+| |.+ ..+.++....|--+.
T Consensus 47 ~~~I~~ka~~k~t--D~VLEvGPGTGnLT~~lLe~~kkVvA---~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 47 IDQIVEKADLKPT--DVVLEVGPGTGNLTVKLLEAGKKVVA---VEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHhccCCCCC--CEEEEeCCCCCHHHHHHHHhcCeEEE---EecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 6777777777554 79999999999999999998655432 33444554443444 544 334433333333333
Q ss_pred Cceeeeeec
Q 038698 266 RAFDMAQCS 274 (283)
Q Consensus 266 ~SFDlV~cs 274 (283)
-.||.++++
T Consensus 122 P~fd~cVsN 130 (315)
T KOG0820|consen 122 PRFDGCVSN 130 (315)
T ss_pred cccceeecc
Confidence 458888774
No 156
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.78 E-value=0.0046 Score=58.56 Aligned_cols=101 Identities=14% Similarity=0.093 Sum_probs=65.2
Q ss_pred CCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCcc----HHHHHHhhcC---CeeEeeccccChHHHHHHHHHc---
Q 038698 178 GGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVA----SWGAYLLKRN---VLTMSFAPRDNHEAQVQFALER--- 247 (283)
Q Consensus 178 ggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtG----sfaa~L~~r~---v~~~sla~~D~s~a~vq~A~er--- 247 (283)
+.|.|++...++ +.|.+.+... +..-+|+..||.|| |++..|.+.. ...+.|.+.|+++..++.|++-
T Consensus 92 neT~FFRd~~~f-~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~ 169 (287)
T PRK10611 92 NLTAFFREAHHF-PILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYR 169 (287)
T ss_pred CCCCccCCcHHH-HHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCC
Confidence 468888887776 3343333222 22358999999999 5666666631 1135688899999999888532
Q ss_pred -----CCC----------------------------eEEEeccccCCCCC-CCceeeeeeccccccc
Q 038698 248 -----GVP----------------------------AVIGVLGTIHLPYP-SRAFDMAQCSRCLIPW 280 (283)
Q Consensus 248 -----g~~----------------------------a~~~v~da~rLPFp-d~SFDlV~cs~~Li~W 280 (283)
+++ +.|...+....||+ .+.||+|+|..+||..
T Consensus 170 ~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF 236 (287)
T PRK10611 170 QEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF 236 (287)
T ss_pred HHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC
Confidence 110 12334454454554 6899999999998875
No 157
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.75 E-value=0.0057 Score=54.81 Aligned_cols=102 Identities=22% Similarity=0.343 Sum_probs=52.7
Q ss_pred CCCCCchhHHHHHHHhhCC----C-CCCCccEEeecCCCcc----HHHHHHhh--cCCe--eEeeccccChHHHHHHHHH
Q 038698 180 TMFPQGADAYIDELASVIP----I-KDGSVRTALDTGCGVA----SWGAYLLK--RNVL--TMSFAPRDNHEAQVQFALE 246 (283)
Q Consensus 180 t~F~~ga~~Yid~I~~~l~----~-~~g~~r~VLDVGCGtG----sfaa~L~~--r~v~--~~sla~~D~s~a~vq~A~e 246 (283)
|.|.+...++-..-..++| . ..+..-+|+.+||++| |++..|.+ .+.. .+.|.+.|+++..++.|++
T Consensus 3 T~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 3 TYFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp --TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 5677777666333333332 1 2235678999999999 56666666 2211 4678899999999988742
Q ss_pred --------cCCC-------------------------eEEEeccccCCCCCCCceeeeeecccccccc
Q 038698 247 --------RGVP-------------------------AVIGVLGTIHLPYPSRAFDMAQCSRCLIPWT 281 (283)
Q Consensus 247 --------rg~~-------------------------a~~~v~da~rLPFpd~SFDlV~cs~~Li~W~ 281 (283)
++++ +.|...+....+-+.+.||+|+|.-+||-..
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~ 150 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFD 150 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeC
Confidence 1221 1233334344455778999999999998653
No 158
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.71 E-value=0.0061 Score=60.01 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=45.9
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC---eEEEeccccCC----CCCCCceeeeee
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP---AVIGVLGTIHL----PYPSRAFDMAQC 273 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~---a~~~v~da~rL----PFpd~SFDlV~c 273 (283)
.+|||+|||+|.|+..++..+. ..+..+|+++.+++.|.+. ++. ..+..+|+... .-..++||+|++
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 6899999999999876554432 2456788888888877542 442 34555564332 123568999998
Q ss_pred c
Q 038698 274 S 274 (283)
Q Consensus 274 s 274 (283)
.
T Consensus 300 D 300 (396)
T PRK15128 300 D 300 (396)
T ss_pred C
Confidence 5
No 159
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.69 E-value=0.005 Score=58.69 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=56.4
Q ss_pred hhHHHHHHHhhCCCC-CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEec----
Q 038698 186 ADAYIDELASVIPIK-DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVL---- 256 (283)
Q Consensus 186 a~~Yid~I~~~l~~~-~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~---- 256 (283)
.+.+.+.+.+.+... .-....+||+|||+|..+..|+..-. -..+..+|.+++++..|.|. ++...+.+.
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 456666666666531 11124799999999998877776311 22356679999888877542 232222221
Q ss_pred --c-ccCCCCCCCceeeeeecc
Q 038698 257 --G-TIHLPYPSRAFDMAQCSR 275 (283)
Q Consensus 257 --d-a~rLPFpd~SFDlV~cs~ 275 (283)
+ ....|..++..|+++|+-
T Consensus 209 e~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred ccccccccccccCceeEEecCC
Confidence 2 345567889999999974
No 160
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.65 E-value=0.0054 Score=59.66 Aligned_cols=86 Identities=17% Similarity=0.257 Sum_probs=46.6
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCe-eEeeccccChHHHHHHHHHcCCCeEEEe--ccccCCCC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVL-TMSFAPRDNHEAQVQFALERGVPAVIGV--LGTIHLPY 263 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~-~~sla~~D~s~a~vq~A~erg~~a~~~v--~da~rLPF 263 (283)
.+|-+.|.+-=.+-.+ ++|||||||||-++..=++.+.. ++.+...++..-..+.+...+...++.+ +.++.+-+
T Consensus 46 ~aYr~~i~~n~~lf~d--K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~L 123 (346)
T KOG1499|consen 46 LAYRNAILQNKHLFKD--KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIEL 123 (346)
T ss_pred HHHHHHHhcchhhcCC--CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEec
Confidence 5565555433332223 79999999999877655554322 2222222333222334444455544433 23444444
Q ss_pred CCCceeeeeec
Q 038698 264 PSRAFDMAQCS 274 (283)
Q Consensus 264 pd~SFDlV~cs 274 (283)
|-...|+|++.
T Consensus 124 P~eKVDiIvSE 134 (346)
T KOG1499|consen 124 PVEKVDIIVSE 134 (346)
T ss_pred CccceeEEeeh
Confidence 48899999884
No 161
>PLN02672 methionine S-methyltransferase
Probab=96.56 E-value=0.0026 Score=69.76 Aligned_cols=71 Identities=11% Similarity=0.008 Sum_probs=47.5
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CC-----------------CeEEEeccccCCCC
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GV-----------------PAVIGVLGTIHLPY 263 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~-----------------~a~~~v~da~rLPF 263 (283)
.+|||+|||+|.++..|+++... ..+.+.|+++++++.|++. ++ .+.+...|... ++
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~-~~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG-YC 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh-hc
Confidence 58999999999999998876322 2567889999988877532 11 13444445433 23
Q ss_pred CC--Cceeeeeecccc
Q 038698 264 PS--RAFDMAQCSRCL 277 (283)
Q Consensus 264 pd--~SFDlV~cs~~L 277 (283)
.+ ..||+|+|+-=-
T Consensus 198 ~~~~~~fDlIVSNPPY 213 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQ 213 (1082)
T ss_pred cccCCceEEEEECCCc
Confidence 33 369999997533
No 162
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.56 E-value=0.0026 Score=60.20 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=46.4
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCcee
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFD 269 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFD 269 (283)
+|.|.+.|....+ ...|-|+|||++-++..- ...|..+|+...+ + .+...|+.++|.+|+|.|
T Consensus 168 ld~ii~~ik~r~~-~~vIaD~GCGEakiA~~~-~~kV~SfDL~a~~----------~-----~V~~cDm~~vPl~d~svD 230 (325)
T KOG3045|consen 168 LDVIIRKIKRRPK-NIVIADFGCGEAKIASSE-RHKVHSFDLVAVN----------E-----RVIACDMRNVPLEDESVD 230 (325)
T ss_pred HHHHHHHHHhCcC-ceEEEecccchhhhhhcc-ccceeeeeeecCC----------C-----ceeeccccCCcCccCccc
Confidence 5666666665443 367999999999887511 1245555544432 1 123347889999999999
Q ss_pred eeeecccc
Q 038698 270 MAQCSRCL 277 (283)
Q Consensus 270 lV~cs~~L 277 (283)
++++-..|
T Consensus 231 vaV~CLSL 238 (325)
T KOG3045|consen 231 VAVFCLSL 238 (325)
T ss_pred EEEeeHhh
Confidence 99885544
No 163
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.56 E-value=0.0023 Score=62.14 Aligned_cols=71 Identities=23% Similarity=0.244 Sum_probs=50.4
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC-----------CCeEEEecc------ccCCCCCCCc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG-----------VPAVIGVLG------TIHLPYPSRA 267 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg-----------~~a~~~v~d------a~rLPFpd~S 267 (283)
+.+||+|||-|.-+...-..++. .+.++|+++..|+.|.+|. .++.+..+| ...++|+|-+
T Consensus 119 ~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 67999999988654433333332 4678899998888887552 124454454 4678999999
Q ss_pred eeeeeecccc
Q 038698 268 FDMAQCSRCL 277 (283)
Q Consensus 268 FDlV~cs~~L 277 (283)
||+|-|.-|+
T Consensus 197 fDivScQF~~ 206 (389)
T KOG1975|consen 197 FDIVSCQFAF 206 (389)
T ss_pred cceeeeeeeE
Confidence 9999998876
No 164
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.43 E-value=0.0046 Score=56.75 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=53.3
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHH----HHcCC-CeEEEeccccCC-C--CCCCceeeeeeccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFA----LERGV-PAVIGVLGTIHL-P--YPSRAFDMAQCSRC 276 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A----~erg~-~a~~~v~da~rL-P--Fpd~SFDlV~cs~~ 276 (283)
.++||||||.|.+...|++++... .+.|+++....+..| .+.++ ++.+...|+..+ + ++++|.|-|+-.--
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 489999999999999999987654 566777776665544 45588 666666664443 2 46669999876433
Q ss_pred cccccc
Q 038698 277 LIPWTS 282 (283)
Q Consensus 277 Li~W~~ 282 (283)
.||+.
T Consensus 129 -DPWpK 133 (227)
T COG0220 129 -DPWPK 133 (227)
T ss_pred -CCCCC
Confidence 36654
No 165
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.014 Score=54.73 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=55.6
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCCCCCC
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHLPYPS 265 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rLPFpd 265 (283)
.++.|.+.+....+ .+||+||+|.|.++..|+++... +..+++++..++.-.++- -+..+..+|+-..+|++
T Consensus 18 v~~kIv~~a~~~~~--d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 18 VIDKIVEAANISPG--DNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHhcCCCCC--CeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence 48888888887553 79999999999999999998543 233444555554444432 22345556888888886
Q ss_pred C-ceeeeeec
Q 038698 266 R-AFDMAQCS 274 (283)
Q Consensus 266 ~-SFDlV~cs 274 (283)
. .++.|+++
T Consensus 93 l~~~~~vVaN 102 (259)
T COG0030 93 LAQPYKVVAN 102 (259)
T ss_pred hcCCCEEEEc
Confidence 5 57777765
No 166
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.38 E-value=0.0093 Score=52.69 Aligned_cols=99 Identities=17% Similarity=0.128 Sum_probs=58.1
Q ss_pred CCeeeeCCCCCCCCCchhHHHHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH--
Q 038698 170 GNVFKFPGGGTMFPQGADAYIDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE-- 246 (283)
Q Consensus 170 ~~~~~Fpgggt~F~~ga~~Yid~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e-- 246 (283)
|-++..|.++...|.. +.-.+.+-.++. ...| .++||++||+|+++..++.++.. .+..+|.++..++.+++
T Consensus 18 g~~l~~p~~~~~rpt~-~~vrea~f~~l~~~~~g--~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~ 92 (189)
T TIGR00095 18 GRLLKLPPGGSTRPTT-RVVRELFFNILRPEIQG--AHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENL 92 (189)
T ss_pred CcccCCCCCCCCCCch-HHHHHHHHHHHHHhcCC--CEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHH
Confidence 4556667766666532 222334444443 1223 58999999999999999998753 35667777777665543
Q ss_pred --cCCC--eEEEeccc-cCCC-C-CCC-ceeeeee
Q 038698 247 --RGVP--AVIGVLGT-IHLP-Y-PSR-AFDMAQC 273 (283)
Q Consensus 247 --rg~~--a~~~v~da-~rLP-F-pd~-SFDlV~c 273 (283)
.+.. +.+...|+ ..|. + ... .||+|+.
T Consensus 93 ~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 93 ALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred HHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 2432 34444554 2222 2 122 4787764
No 167
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.36 E-value=0.0091 Score=55.73 Aligned_cols=84 Identities=23% Similarity=0.198 Sum_probs=50.0
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc--CCCeE----E-EeccccCC
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER--GVPAV----I-GVLGTIHL 261 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er--g~~a~----~-~v~da~rL 261 (283)
+++|.+.++. -.+++|||+|||+|+-.-...+. + ...++..+|.++.+++++..- ..+.. . ...-.+.+
T Consensus 22 l~El~~r~p~--f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 22 LSELRKRLPD--FRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHhCcC--CCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 5566655543 24689999999999644333331 1 233567789999998877532 22111 1 11112345
Q ss_pred CCCCCceeeeeeccccc
Q 038698 262 PYPSRAFDMAQCSRCLI 278 (283)
Q Consensus 262 PFpd~SFDlV~cs~~Li 278 (283)
++... |+|+++.+|.
T Consensus 99 ~~~~~--DLvi~s~~L~ 113 (274)
T PF09243_consen 99 PFPPD--DLVIASYVLN 113 (274)
T ss_pred cCCCC--cEEEEehhhh
Confidence 55444 9999999884
No 168
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.34 E-value=0.004 Score=52.08 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=37.1
Q ss_pred hHHHHHHHhhCCC--CCCCccEEeecCCCccHHHHHHhh-----cCCeeEeeccccChHHHHHHHHHc
Q 038698 187 DAYIDELASVIPI--KDGSVRTALDTGCGVASWGAYLLK-----RNVLTMSFAPRDNHEAQVQFALER 247 (283)
Q Consensus 187 ~~Yid~I~~~l~~--~~g~~r~VLDVGCGtGsfaa~L~~-----r~v~~~sla~~D~s~a~vq~A~er 247 (283)
..+.+.|.+++.. ...+..+|+|+|||-|+++..|.. . ....+.++|..+..++.|.++
T Consensus 7 ~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 7 ERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 3344444444432 123457899999999999998888 3 233455667766666655443
No 169
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.33 E-value=0.0086 Score=51.43 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=31.2
Q ss_pred chhHHHHHHHhhCC-CCCCCccEEeecCCCccHHHHHHhhcC
Q 038698 185 GADAYIDELASVIP-IKDGSVRTALDTGCGVASWGAYLLKRN 225 (283)
Q Consensus 185 ga~~Yid~I~~~l~-~~~g~~r~VLDVGCGtGsfaa~L~~r~ 225 (283)
.|...+.+|.+..+ ...+...++||+||++|.|+.+++++.
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~ 45 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRG 45 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTST
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecc
Confidence 34455777888887 445556899999999999999999986
No 170
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.25 E-value=0.0041 Score=60.97 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=46.1
Q ss_pred cEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CCC-eEEEeccccCCCCCCCceeeeeec
Q 038698 205 RTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTIHLPYPSRAFDMAQCS 274 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~rLPFpd~SFDlV~cs 274 (283)
.+|||++||+|.++..++.+ ++ ..+..+|+++..++.+.+. ++. ..+...|+..+....+.||+|+..
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 47999999999999998764 32 2466788888887776532 443 225555665543214679999864
No 171
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.17 E-value=0.016 Score=50.31 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=33.9
Q ss_pred ccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHcCC-----CeEEEecc-ccCC--C-CCCCceeeeee
Q 038698 204 VRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALERGV-----PAVIGVLG-TIHL--P-YPSRAFDMAQC 273 (283)
Q Consensus 204 ~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~erg~-----~a~~~v~d-a~rL--P-Fpd~SFDlV~c 273 (283)
..+||++|||+|..+..++.. +...+-++-.+.....++...+++. .+.+..++ .+.+ . +..+.||+|++
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ila 125 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILA 125 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEE
Confidence 379999999999777666655 2211212222222233333333321 12233222 1111 1 24568999999
Q ss_pred ccccc
Q 038698 274 SRCLI 278 (283)
Q Consensus 274 s~~Li 278 (283)
+.|+-
T Consensus 126 sDv~Y 130 (173)
T PF10294_consen 126 SDVLY 130 (173)
T ss_dssp ES--S
T ss_pred ecccc
Confidence 99983
No 172
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.15 E-value=0.012 Score=55.15 Aligned_cols=89 Identities=21% Similarity=0.273 Sum_probs=58.1
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcC-CeeEeeccccChHHHHHHHHHc------CCCeEEEecccc--C
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRN-VLTMSFAPRDNHEAQVQFALER------GVPAVIGVLGTI--H 260 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~-v~~~sla~~D~s~a~vq~A~er------g~~a~~~v~da~--r 260 (283)
.+...++++.......+||.||||+|...--|++.+ -..+.+..-|.++.++..-.++ ...+.+..++.. .
T Consensus 58 ~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~ 137 (264)
T KOG2361|consen 58 LREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLK 137 (264)
T ss_pred HHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhcc
Confidence 456667777544334489999999997665555532 2235667789998888776544 112333333333 3
Q ss_pred CCCCCCceeeeeeccccc
Q 038698 261 LPYPSRAFDMAQCSRCLI 278 (283)
Q Consensus 261 LPFpd~SFDlV~cs~~Li 278 (283)
-|...+++|+|++--+|.
T Consensus 138 ~~~~~~svD~it~IFvLS 155 (264)
T KOG2361|consen 138 EPPEEGSVDIITLIFVLS 155 (264)
T ss_pred CCCCcCccceEEEEEEEe
Confidence 478899999999877663
No 173
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.05 E-value=0.016 Score=56.48 Aligned_cols=80 Identities=20% Similarity=0.285 Sum_probs=56.8
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH---c-CCCeE--EEeccccCCC
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE---R-GVPAV--IGVLGTIHLP 262 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e---r-g~~a~--~~v~da~rLP 262 (283)
+...+..+...+.| ..|||==||||+++ .+.+..+....|.|+..+|++-|.. . ++.-. +.+.|+..||
T Consensus 185 lAR~mVNLa~v~~G--~~vlDPFcGTGgiL---iEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp 259 (347)
T COG1041 185 LARAMVNLARVKRG--ELVLDPFCGTGGIL---IEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP 259 (347)
T ss_pred HHHHHHHHhccccC--CEeecCcCCccHHH---HhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC
Confidence 34445555555555 58999999999985 3444445556788999999887753 2 34322 3444999999
Q ss_pred CCCCceeeeee
Q 038698 263 YPSRAFDMAQC 273 (283)
Q Consensus 263 Fpd~SFDlV~c 273 (283)
|++++||.|.|
T Consensus 260 l~~~~vdaIat 270 (347)
T COG1041 260 LRDNSVDAIAT 270 (347)
T ss_pred CCCCccceEEe
Confidence 99999999987
No 174
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.03 E-value=0.01 Score=57.26 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=44.3
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC-eEEEecccc
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP-AVIGVLGTI 259 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~-a~~~v~da~ 259 (283)
...++.+.+.+...+ .+|||+|||+|.|+..|.+.. ..+.++|.++.+++.|.+. ++. +.+..+++.
T Consensus 184 ~~l~~~v~~~~~~~~---~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~ 255 (353)
T TIGR02143 184 IKMLEWACEVTQGSK---GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAE 255 (353)
T ss_pred HHHHHHHHHHhhcCC---CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHH
Confidence 344556666654322 259999999999999887753 2567888888888877653 442 345545543
No 175
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.99 E-value=0.0088 Score=55.68 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=50.7
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc------CCeeEeeccccChHHHHHHHHH----cCCC---eEEEe
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR------NVLTMSFAPRDNHEAQVQFALE----RGVP---AVIGV 255 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r------~v~~~sla~~D~s~a~vq~A~e----rg~~---a~~~v 255 (283)
-.+.|.+++....+ .+|||-.||+|.|.....++ ......+.|.|+.+..+..|.. +++. ..+..
T Consensus 34 i~~l~~~~~~~~~~--~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~ 111 (311)
T PF02384_consen 34 IVDLMVKLLNPKKG--DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHHTT-TT--EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred HHHHHHhhhhcccc--ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence 36778888865444 68999999999998766552 1123467788998887776642 2332 12444
Q ss_pred ccccCCCCC--CCceeeeeecc
Q 038698 256 LGTIHLPYP--SRAFDMAQCSR 275 (283)
Q Consensus 256 ~da~rLPFp--d~SFDlV~cs~ 275 (283)
.++-..+.. ...||+|+++-
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NP 133 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNP 133 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE-
T ss_pred cccccccccccccccccccCCC
Confidence 454444433 58999999874
No 176
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.017 Score=53.24 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=46.8
Q ss_pred cEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc---CC------------CeEEEeccccCCCCCCCce
Q 038698 205 RTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER---GV------------PAVIGVLGTIHLPYPSRAF 268 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er---g~------------~a~~~v~da~rLPFpd~SF 268 (283)
...||||.|+|++++.+... +.++....|++..++.|+.+.+. -+ ...+.++|....-=+.+.+
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 57999999999988765532 22232336777777766655321 11 1234466776666677889
Q ss_pred eeeeeccc
Q 038698 269 DMAQCSRC 276 (283)
Q Consensus 269 DlV~cs~~ 276 (283)
|.|||...
T Consensus 164 DaIhvGAa 171 (237)
T KOG1661|consen 164 DAIHVGAA 171 (237)
T ss_pred ceEEEccC
Confidence 99999754
No 177
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.92 E-value=0.013 Score=55.85 Aligned_cols=84 Identities=15% Similarity=0.055 Sum_probs=54.7
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---CCeEEEeccccCCC-C-C
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---VPAVIGVLGTIHLP-Y-P 264 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---~~a~~~v~da~rLP-F-p 264 (283)
++++.+.+...+| .++||.+||.|..+..|++..-....+.++|.++++++.|.++- -...+...+...++ . +
T Consensus 8 l~Evl~~L~~~pg--~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALAIKPD--GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhCCCCC--CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 4566666665444 48999999999999999987322235788999999999987652 12333333333221 1 1
Q ss_pred CC--ceeeeeecc
Q 038698 265 SR--AFDMAQCSR 275 (283)
Q Consensus 265 d~--SFDlV~cs~ 275 (283)
++ +||.|++-.
T Consensus 86 ~~~~~vDgIl~DL 98 (296)
T PRK00050 86 EGLGKVDGILLDL 98 (296)
T ss_pred cCCCccCEEEECC
Confidence 12 788887643
No 178
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=95.89 E-value=0.022 Score=53.64 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=46.4
Q ss_pred CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeeccccc
Q 038698 203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLI 278 (283)
Q Consensus 203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li 278 (283)
...++||||.|.|.-+..|+..-- .+..-+.|.-|...-.+||.... +.....=.+..||+|.|--+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSKKGFTVL----DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHhCCCeEE----ehhhhhccCCceEEEeehhhhh
Confidence 456899999999999999987411 23334667777666667786432 2222322456899999987764
No 179
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.85 E-value=0.02 Score=51.27 Aligned_cols=85 Identities=20% Similarity=0.098 Sum_probs=60.7
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCC-----CC
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLP-----YP 264 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLP-----Fp 264 (283)
.+.|...+..+.| .-||.+|-|||-++..++++++.--++..++.+.+-+..-.++...+.+..+|+..|- ++
T Consensus 37 A~~M~s~I~pesg--lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 37 ARKMASVIDPESG--LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred HHHHHhccCcccC--CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence 5667777766544 6799999999999999999987766777777777654444444333334445555554 78
Q ss_pred CCceeeeeeccc
Q 038698 265 SRAFDMAQCSRC 276 (283)
Q Consensus 265 d~SFDlV~cs~~ 276 (283)
+.-||.|+|..=
T Consensus 115 gq~~D~viS~lP 126 (194)
T COG3963 115 GQFFDSVISGLP 126 (194)
T ss_pred CCeeeeEEeccc
Confidence 999999999653
No 180
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=95.81 E-value=0.028 Score=52.68 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=57.0
Q ss_pred HHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCC
Q 038698 192 ELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPS 265 (283)
Q Consensus 192 ~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd 265 (283)
.|...+.+..| .+|||.|.|+|.++++|+..-.....+..++..++..+.|++. ++. +.+...|....=+++
T Consensus 85 ~I~~~~gi~pg--~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 85 YIVARLGISPG--SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHcCCCCC--CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 56677777666 6999999999999999996311122455677788877777643 442 344455666655555
Q ss_pred Cceeeeeeccccccc
Q 038698 266 RAFDMAQCSRCLIPW 280 (283)
Q Consensus 266 ~SFDlV~cs~~Li~W 280 (283)
.||.|+- ....||
T Consensus 163 -~vDav~L-Dmp~PW 175 (256)
T COG2519 163 -DVDAVFL-DLPDPW 175 (256)
T ss_pred -ccCEEEE-cCCChH
Confidence 8998875 333455
No 181
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.79 E-value=0.018 Score=55.76 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=49.4
Q ss_pred eeCCCCCCCCCch----hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc--
Q 038698 174 KFPGGGTMFPQGA----DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-- 247 (283)
Q Consensus 174 ~Fpgggt~F~~ga----~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-- 247 (283)
.|.=....|.+-- +...+.+.+.+... + .++||++||+|.|+..|.+.. -.+.++|.++.+++.|++.
T Consensus 176 ~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~-~--~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~ 249 (362)
T PRK05031 176 IYRQVENSFTQPNAAVNEKMLEWALDATKGS-K--GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIA 249 (362)
T ss_pred EEEeCCCCeeccCHHHHHHHHHHHHHHhhcC-C--CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHH
Confidence 3333334566532 33455555555421 1 369999999999999887752 2567788888888877643
Q ss_pred --CCC-eEEEecccc
Q 038698 248 --GVP-AVIGVLGTI 259 (283)
Q Consensus 248 --g~~-a~~~v~da~ 259 (283)
++. +.+..+++.
T Consensus 250 ~~~~~~v~~~~~d~~ 264 (362)
T PRK05031 250 ANGIDNVQIIRMSAE 264 (362)
T ss_pred HhCCCcEEEEECCHH
Confidence 453 445555543
No 182
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.62 E-value=0.025 Score=54.58 Aligned_cols=73 Identities=21% Similarity=0.213 Sum_probs=41.8
Q ss_pred CCCCCch----hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC-
Q 038698 180 TMFPQGA----DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP- 250 (283)
Q Consensus 180 t~F~~ga----~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~- 250 (283)
..|.+-- ...++.+.++++...+ +|||+=||+|+|+..|++..- .+.++++.+++++.|.+ .++.
T Consensus 172 ~sFfQvN~~~~~~l~~~~~~~l~~~~~---~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n 245 (352)
T PF05958_consen 172 GSFFQVNPEQNEKLYEQALEWLDLSKG---DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDN 245 (352)
T ss_dssp TS---SBHHHHHHHHHHHHHHCTT-TT---EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--S
T ss_pred CcCccCcHHHHHHHHHHHHHHhhcCCC---cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCc
Confidence 4466533 3336666777775432 699999999999999998633 35566777888776653 3554
Q ss_pred eEEEeccc
Q 038698 251 AVIGVLGT 258 (283)
Q Consensus 251 a~~~v~da 258 (283)
+.+..+++
T Consensus 246 ~~f~~~~~ 253 (352)
T PF05958_consen 246 VEFIRGDA 253 (352)
T ss_dssp EEEEE--S
T ss_pred ceEEEeec
Confidence 34544433
No 183
>PLN02823 spermine synthase
Probab=95.52 E-value=0.051 Score=52.56 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=55.1
Q ss_pred HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcC---------CCeEEEeccc
Q 038698 188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERG---------VPAVIGVLGT 258 (283)
Q Consensus 188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg---------~~a~~~v~da 258 (283)
.|.+.|....-.....+++||-||+|.|..+..+++... ...+..+|+.++.++.|++.- ....+.+.|+
T Consensus 88 ~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da 166 (336)
T PLN02823 88 VYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA 166 (336)
T ss_pred HHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChh
Confidence 466666544222223468999999999999988887531 124566788889888887531 1122344442
Q ss_pred -cCCCCCCCceeeeeec
Q 038698 259 -IHLPYPSRAFDMAQCS 274 (283)
Q Consensus 259 -~rLPFpd~SFDlV~cs 274 (283)
.-|.-.++.||+|++-
T Consensus 167 ~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 167 RAELEKRDEKFDVIIGD 183 (336)
T ss_pred HHHHhhCCCCccEEEec
Confidence 2234456899999975
No 184
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.50 E-value=0.064 Score=50.52 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=46.2
Q ss_pred CCCCCCCchhHHHHHHHhhCC----CCCCCccEEeecCCCcc----HHHHHHhhcCCe----eEeeccccChHHHHHHHH
Q 038698 178 GGTMFPQGADAYIDELASVIP----IKDGSVRTALDTGCGVA----SWGAYLLKRNVL----TMSFAPRDNHEAQVQFAL 245 (283)
Q Consensus 178 ggt~F~~ga~~Yid~I~~~l~----~~~g~~r~VLDVGCGtG----sfaa~L~~r~v~----~~sla~~D~s~a~vq~A~ 245 (283)
.-|.|+++..++-..-.+++| .+.++.-+|.-+||+|| |+|..|.+.... .+.|.+.|++...++.|.
T Consensus 67 n~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~ 146 (268)
T COG1352 67 NVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR 146 (268)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh
Confidence 357777877777333333333 22234678999999999 677777775432 467888899999888874
No 185
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.45 E-value=0.041 Score=50.68 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=55.3
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc---CCCeEEEeccccCCCC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER---GVPAVIGVLGTIHLPY 263 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er---g~~a~~~v~da~rLPF 263 (283)
...++.|.+.+....+ ..|||||.|+|.++..|+++.. .+..++.++...+.-.++ .....+...|+..+.+
T Consensus 16 ~~~~~~Iv~~~~~~~~--~~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 16 PNIADKIVDALDLSEG--DTVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHHHTCGTT--SEEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCG
T ss_pred HHHHHHHHHhcCCCCC--CEEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHHhhhcccceeeecchhcccc
Confidence 4468888888876534 7999999999999999998752 334455556665555553 2334555567777776
Q ss_pred CC---Cceeeeeec
Q 038698 264 PS---RAFDMAQCS 274 (283)
Q Consensus 264 pd---~SFDlV~cs 274 (283)
++ +.-..|+++
T Consensus 91 ~~~~~~~~~~vv~N 104 (262)
T PF00398_consen 91 YDLLKNQPLLVVGN 104 (262)
T ss_dssp GGHCSSSEEEEEEE
T ss_pred HHhhcCCceEEEEE
Confidence 65 445566654
No 186
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.35 E-value=0.057 Score=53.99 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=61.1
Q ss_pred CCeeeeCCCCCCCCCch----hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH
Q 038698 170 GNVFKFPGGGTMFPQGA----DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL 245 (283)
Q Consensus 170 ~~~~~Fpgggt~F~~ga----~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~ 245 (283)
+..+.|+.+ .|.+-. ...++...+.+...++ .++||+=||.|+|+..|+++.- .+.++++++++++.|.
T Consensus 260 ~~~~~~~~~--sF~Q~N~~~~ekl~~~a~~~~~~~~~--~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~ 332 (432)
T COG2265 260 GVSFQISPR--SFFQVNPAVAEKLYETALEWLELAGG--ERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQ 332 (432)
T ss_pred ceEEEeCCC--CceecCHHHHHHHHHHHHHHHhhcCC--CEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHH
Confidence 455666554 777644 3345555566655333 6899999999999999997632 3445566666665543
Q ss_pred ----HcCCC-eEEEeccccCCCCC---CCceeeeee
Q 038698 246 ----ERGVP-AVIGVLGTIHLPYP---SRAFDMAQC 273 (283)
Q Consensus 246 ----erg~~-a~~~v~da~rLPFp---d~SFDlV~c 273 (283)
..++. +.+..+++++..-. ...||+|+-
T Consensus 333 ~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 333 ENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred HHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 23554 55666676665433 357888863
No 187
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.22 E-value=0.028 Score=56.92 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=50.2
Q ss_pred ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH----HcCCCeE-EEeccccCC--CCCCCceeeeeeccc
Q 038698 204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL----ERGVPAV-IGVLGTIHL--PYPSRAFDMAQCSRC 276 (283)
Q Consensus 204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~----erg~~a~-~~v~da~rL--PFpd~SFDlV~cs~~ 276 (283)
...+||||||.|.|...++.++... .+.|+|++...+..|+ ++++.+. +...++..+ =|+++++|.|+-.--
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~-~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDA-LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCC-CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 4789999999999999999875432 3556666666555443 3466443 333343322 288999999987644
Q ss_pred ccccc
Q 038698 277 LIPWT 281 (283)
Q Consensus 277 Li~W~ 281 (283)
= ||-
T Consensus 427 D-PWp 430 (506)
T PRK01544 427 D-PWI 430 (506)
T ss_pred C-CCC
Confidence 3 774
No 188
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.21 E-value=0.043 Score=55.36 Aligned_cols=43 Identities=23% Similarity=0.259 Sum_probs=32.6
Q ss_pred ccEEeecCCCccHHHHHHhhcCC-------eeEeeccccChHHHHHHHHH
Q 038698 204 VRTALDTGCGVASWGAYLLKRNV-------LTMSFAPRDNHEAQVQFALE 246 (283)
Q Consensus 204 ~r~VLDVGCGtGsfaa~L~~r~v-------~~~sla~~D~s~a~vq~A~e 246 (283)
..+|||.+||+|.|...++++.. ....+.+.|+++..+..|..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~ 81 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK 81 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence 35899999999999887765421 13577899999988887754
No 189
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=95.20 E-value=0.17 Score=45.69 Aligned_cols=101 Identities=15% Similarity=0.123 Sum_probs=54.9
Q ss_pred eecCCeeeeCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhh--cCCeeEeeccccChHHHHHHH
Q 038698 167 QFQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLK--RNVLTMSFAPRDNHEAQVQFA 244 (283)
Q Consensus 167 ~~~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~--r~v~~~sla~~D~s~a~vq~A 244 (283)
+..|=+|.+.-.-.+|..+-..-..+|.+.+.. | .+|||+-||.|.|+..+++ +... +...|+.+..++..
T Consensus 69 ~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~~--~--e~VlD~faGIG~f~l~~ak~~~~~~---V~A~d~Np~a~~~L 141 (200)
T PF02475_consen 69 KENGIRFKVDLSKVYFSPRLSTERRRIANLVKP--G--EVVLDMFAGIGPFSLPIAKHGKAKR---VYAVDLNPDAVEYL 141 (200)
T ss_dssp EETTEEEEEETTTS---GGGHHHHHHHHTC--T--T---EEEETT-TTTTTHHHHHHHT-SSE---EEEEES-HHHHHHH
T ss_pred EeCCEEEEEccceEEEccccHHHHHHHHhcCCc--c--eEEEEccCCccHHHHHHhhhcCccE---EEEecCCHHHHHHH
Confidence 344556666666677776655556677777543 4 6999999999999998887 3332 33456665554433
Q ss_pred ---HHc-CCC--eEEEeccccCCCCCCCceeeeeecc
Q 038698 245 ---LER-GVP--AVIGVLGTIHLPYPSRAFDMAQCSR 275 (283)
Q Consensus 245 ---~er-g~~--a~~~v~da~rLPFpd~SFDlV~cs~ 275 (283)
.+. ++. .....+|+..++- .+.||-|++..
T Consensus 142 ~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 142 KENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp HHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred HHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 233 443 3345567776655 89999998764
No 190
>PLN02476 O-methyltransferase
Probab=95.20 E-value=0.039 Score=52.23 Aligned_cols=70 Identities=10% Similarity=0.040 Sum_probs=41.7
Q ss_pred ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEeccc-cCCC-C----CCCceeee
Q 038698 204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLGT-IHLP-Y----PSRAFDMA 271 (283)
Q Consensus 204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~da-~rLP-F----pd~SFDlV 271 (283)
.++|||||+|+|+.+.+|+..-.....+..+|..++..+.|++ .|+. ..+..+++ +-|| + .+++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 3799999999999998888631111124455666666666642 3553 33333442 2232 1 24689999
Q ss_pred ee
Q 038698 272 QC 273 (283)
Q Consensus 272 ~c 273 (283)
+-
T Consensus 199 FI 200 (278)
T PLN02476 199 FV 200 (278)
T ss_pred EE
Confidence 74
No 191
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=95.07 E-value=0.06 Score=50.08 Aligned_cols=88 Identities=17% Similarity=0.225 Sum_probs=53.8
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCC
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLP 262 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLP 262 (283)
+-.|..++.+.+| .+||+.|.|.|+++..|+.. +..+ .+.-+|.+++..+.|++. |+. ..+...|+..--
T Consensus 29 ~~~I~~~l~i~pG--~~VlEaGtGSG~lt~~l~r~v~p~G-~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 29 ISYILMRLDIRPG--SRVLEAGTGSGSLTHALARAVGPTG-HVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred HHHHHHHcCCCCC--CEEEEecCCcHHHHHHHHHHhCCCe-EEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 4467778888777 69999999999999999874 2222 455678888887777532 553 456666765555
Q ss_pred CC---CCceeeeeecccccccc
Q 038698 263 YP---SRAFDMAQCSRCLIPWT 281 (283)
Q Consensus 263 Fp---d~SFDlV~cs~~Li~W~ 281 (283)
|+ ++.||.|+- ..-.||.
T Consensus 106 ~~~~~~~~~DavfL-Dlp~Pw~ 126 (247)
T PF08704_consen 106 FDEELESDFDAVFL-DLPDPWE 126 (247)
T ss_dssp -STT-TTSEEEEEE-ESSSGGG
T ss_pred ccccccCcccEEEE-eCCCHHH
Confidence 53 368999875 2334553
No 192
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.88 E-value=0.03 Score=45.71 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=26.7
Q ss_pred EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH
Q 038698 206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL 245 (283)
Q Consensus 206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~ 245 (283)
++||||||.|.++..++++.... .+..++..+.+.+.++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~-~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEG-RVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCC-EEEEEecCHHHHHHHH
Confidence 58999999999999888764321 3445566665554443
No 193
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.82 E-value=0.0088 Score=56.93 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=50.3
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeeccccccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIPW 280 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~W 280 (283)
..+||+|||.|-++. .. ....+.+.|++...+..|...|.. ...++|+-.+|+.+.+||.+++..++-+|
T Consensus 47 sv~~d~gCGngky~~---~~--p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhl 116 (293)
T KOG1331|consen 47 SVGLDVGCGNGKYLG---VN--PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHL 116 (293)
T ss_pred ceeeecccCCcccCc---CC--CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhh
Confidence 689999999996542 11 112356778877766666654542 34556899999999999999999988544
No 194
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.81 E-value=0.058 Score=49.58 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=42.0
Q ss_pred CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-CC----CeEEEeccccCCCCCCCceeeeeecccc
Q 038698 203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-GV----PAVIGVLGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-g~----~a~~~v~da~rLPFpd~SFDlV~cs~~L 277 (283)
...++||.|+|.|..+..|+-.-...+++ ++..+.-++.|.+. +. ...+...+.|..--+.+.+|+|||.=|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDl--VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDL--VEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEE--EES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEE--eccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 45789999999999998776543444444 44455556666642 21 1234445666665556899999998887
Q ss_pred cc
Q 038698 278 IP 279 (283)
Q Consensus 278 i~ 279 (283)
.+
T Consensus 133 gh 134 (218)
T PF05891_consen 133 GH 134 (218)
T ss_dssp GG
T ss_pred cc
Confidence 54
No 195
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=94.77 E-value=0.03 Score=47.77 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=25.6
Q ss_pred eEEEeccccCCCCCCCceeeeeeccccccc
Q 038698 251 AVIGVLGTIHLPYPSRAFDMAQCSRCLIPW 280 (283)
Q Consensus 251 a~~~v~da~rLPFpd~SFDlV~cs~~Li~W 280 (283)
+.+.+++++.|||++++||+|++..++..|
T Consensus 28 i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~ 57 (160)
T PLN02232 28 IEWIEGDAIDLPFDDCEFDAVTMGYGLRNV 57 (160)
T ss_pred eEEEEechhhCCCCCCCeeEEEecchhhcC
Confidence 457778999999999999999999888544
No 196
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.73 E-value=0.049 Score=47.98 Aligned_cols=67 Identities=19% Similarity=0.164 Sum_probs=45.9
Q ss_pred cEEeecCCCccHHH--HHHhhcCCeeEeeccccChHHHHHHHH----HcCCCeEEEeccccCCCCCCCceeeeeecc
Q 038698 205 RTALDTGCGVASWG--AYLLKRNVLTMSFAPRDNHEAQVQFAL----ERGVPAVIGVLGTIHLPYPSRAFDMAQCSR 275 (283)
Q Consensus 205 r~VLDVGCGtGsfa--a~L~~r~v~~~sla~~D~s~a~vq~A~----erg~~a~~~v~da~rLPFpd~SFDlV~cs~ 275 (283)
..++|+|||.|-+. ..+.+. -.+.|+|+.++.++.+. +--+.+.+.+.+...|-+..+.||.++-+.
T Consensus 50 kkl~DLgcgcGmLs~a~sm~~~----e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 50 KKLKDLGCGCGMLSIAFSMPKN----ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred cchhhhcCchhhhHHHhhcCCC----ceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 68999999999665 333332 13567888888877654 334445555667777778889999887653
No 197
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.68 E-value=0.12 Score=47.08 Aligned_cols=87 Identities=22% Similarity=0.413 Sum_probs=51.3
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHH---HHH-HHHcCCCeEE--EeccccC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQ---VQF-ALERGVPAVI--GVLGTIH 260 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~---vq~-A~erg~~a~~--~v~da~r 260 (283)
+.-++.|.+.++.. + .+||.||||||.-+.+++++-. .+..-+.|..... |+. +.+.+.+++. ..+|+.+
T Consensus 12 ~pIl~vL~~~l~~~-~--~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 12 DPILEVLKQYLPDS-G--TRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA 87 (204)
T ss_pred hHHHHHHHHHhCcc-C--ceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC
Confidence 44566677777642 2 2699999999998888887632 2345566666544 221 2233433221 0123323
Q ss_pred C--C------CCCCceeeeeecccc
Q 038698 261 L--P------YPSRAFDMAQCSRCL 277 (283)
Q Consensus 261 L--P------Fpd~SFDlV~cs~~L 277 (283)
- | +..++||.|+|.-++
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~l 112 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINML 112 (204)
T ss_pred CCCccccccccCCCCcceeeehhHH
Confidence 2 2 346799999998776
No 198
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=94.10 E-value=0.12 Score=51.90 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=42.6
Q ss_pred hHHHHHHHhhCCCC--CC----CccEEeecCCCccHHHHHHhhc------CCeeEeeccccChHHHHHH-HHHcCC--Ce
Q 038698 187 DAYIDELASVIPIK--DG----SVRTALDTGCGVASWGAYLLKR------NVLTMSFAPRDNHEAQVQF-ALERGV--PA 251 (283)
Q Consensus 187 ~~Yid~I~~~l~~~--~g----~~r~VLDVGCGtGsfaa~L~~r------~v~~~sla~~D~s~a~vq~-A~erg~--~a 251 (283)
+.|-+.|.+.|... .. ...+|||||||+|-+...-++. .+.+..+.........++. ..+.+. .+
T Consensus 164 ~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V 243 (448)
T PF05185_consen 164 DQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKV 243 (448)
T ss_dssp HHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTE
T ss_pred HHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeE
Confidence 55655665555421 11 1357999999999876543332 1223223222211111211 122333 35
Q ss_pred EEEeccccCCCCCCCceeeeeeccc
Q 038698 252 VIGVLGTIHLPYPSRAFDMAQCSRC 276 (283)
Q Consensus 252 ~~~v~da~rLPFpd~SFDlV~cs~~ 276 (283)
.+...+++.+..|. ..|+|++...
T Consensus 244 ~vi~~d~r~v~lpe-kvDIIVSElL 267 (448)
T PF05185_consen 244 TVIHGDMREVELPE-KVDIIVSELL 267 (448)
T ss_dssp EEEES-TTTSCHSS--EEEEEE---
T ss_pred EEEeCcccCCCCCC-ceeEEEEecc
Confidence 55556777777765 8999998643
No 199
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.07 E-value=0.15 Score=53.75 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=33.9
Q ss_pred eeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCC--Cceeeeeec
Q 038698 230 SFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPS--RAFDMAQCS 274 (283)
Q Consensus 230 sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd--~SFDlV~cs 274 (283)
.+.+.|+++.++..|++. |+. +.+...|..+++.++ ++||+|+|+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence 578999999999887643 653 446667888886654 689999997
No 200
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=93.71 E-value=0.32 Score=44.65 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=53.6
Q ss_pred CchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeE--EEe-c
Q 038698 184 QGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAV--IGV-L 256 (283)
Q Consensus 184 ~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~--~~v-~ 256 (283)
.....++..|.++.+ +.+||+||.+.|+-+.+|+..-..-..+.-+|..++..+.|++. |+... +.. +
T Consensus 45 ~e~g~~L~~L~~~~~-----~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g 119 (219)
T COG4122 45 PETGALLRLLARLSG-----PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119 (219)
T ss_pred hhHHHHHHHHHHhcC-----CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC
Confidence 345667777766663 36899999999998888887421011455667778887777632 55332 222 2
Q ss_pred c-ccCCC-CCCCceeeeee
Q 038698 257 G-TIHLP-YPSRAFDMAQC 273 (283)
Q Consensus 257 d-a~rLP-Fpd~SFDlV~c 273 (283)
+ .+.|- +.+++||+|+-
T Consensus 120 dal~~l~~~~~~~fDliFI 138 (219)
T COG4122 120 DALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred cHHHHHHhccCCCccEEEE
Confidence 3 11222 67899999974
No 201
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=93.08 E-value=0.37 Score=42.81 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=39.8
Q ss_pred EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHH----HHHcCCC-eEEEeccccCCCCCCCceeeeeeccc
Q 038698 206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQF----ALERGVP-AVIGVLGTIHLPYPSRAFDMAQCSRC 276 (283)
Q Consensus 206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~----A~erg~~-a~~~v~da~rLPFpd~SFDlV~cs~~ 276 (283)
++||||.|.|.-|.-|+=... ...+..+|...-.+.| +.+-|.. +.+....++. +-...+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh
Confidence 799999999976654432111 1123445555544433 3344776 4444445666 778899999998654
No 202
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.08 E-value=0.11 Score=48.93 Aligned_cols=52 Identities=19% Similarity=0.075 Sum_probs=36.8
Q ss_pred HhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH
Q 038698 194 ASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE 246 (283)
Q Consensus 194 ~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e 246 (283)
.+.++..+-....+|||||-.|.+++.+++.-. ...+-|+|+.+..|+.|.+
T Consensus 49 Lk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark 100 (288)
T KOG2899|consen 49 LKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARK 100 (288)
T ss_pred hhhccccccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHH
Confidence 344443333457899999999999999887411 2235677888888888864
No 203
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=92.79 E-value=0.33 Score=47.71 Aligned_cols=103 Identities=12% Similarity=0.103 Sum_probs=59.4
Q ss_pred cCC-eeeeCCCCCCCCCchhHH-----HHHHHhhCCCCCCC-ccEEeecCCCccHHHHHHhhc--CCeeEeeccccChHH
Q 038698 169 QGN-VFKFPGGGTMFPQGADAY-----IDELASVIPIKDGS-VRTALDTGCGVASWGAYLLKR--NVLTMSFAPRDNHEA 239 (283)
Q Consensus 169 ~~~-~~~Fpgggt~F~~ga~~Y-----id~I~~~l~~~~g~-~r~VLDVGCGtGsfaa~L~~r--~v~~~sla~~D~s~a 239 (283)
||. +|.+|..+..|-+-+... +-.+........+. .-+|||+-||+|.++..++.+ ++ -.+..+|+++.
T Consensus 3 EG~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~ 80 (374)
T TIGR00308 3 EGKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGV--REVFANDINPK 80 (374)
T ss_pred cceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHH
Confidence 444 667776666777766444 21111112211110 137999999999999998886 33 24567888888
Q ss_pred HHHHHHHc----CCC-eEEEeccccCC-CCCCCceeeeee
Q 038698 240 QVQFALER----GVP-AVIGVLGTIHL-PYPSRAFDMAQC 273 (283)
Q Consensus 240 ~vq~A~er----g~~-a~~~v~da~rL-PFpd~SFDlV~c 273 (283)
.++.+.+. ++. ..+...|+.++ .-....||+|..
T Consensus 81 Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 81 AVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred HHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 87766432 332 33444454333 222356998864
No 204
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=92.02 E-value=0.42 Score=41.98 Aligned_cols=67 Identities=21% Similarity=0.126 Sum_probs=37.6
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccc----cCCCCCCCceeeeeec
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGT----IHLPYPSRAFDMAQCS 274 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da----~rLPFpd~SFDlV~cs 274 (283)
++|||+-||.|..+.++++..-. +..+|+.+..++.|+.. |+. ..+..+|. .++..... ||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~-~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKI-FDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcccccc-ccEEEEC
Confidence 37999999999999999987432 34567777777776532 553 34544552 23333333 8999987
Q ss_pred c
Q 038698 275 R 275 (283)
Q Consensus 275 ~ 275 (283)
-
T Consensus 77 P 77 (163)
T PF09445_consen 77 P 77 (163)
T ss_dssp -
T ss_pred C
Confidence 4
No 205
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=91.90 E-value=0.39 Score=48.60 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=46.6
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH---Hc-CCCe-EEEeccccCCC-CCCCceeeee----ec
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL---ER-GVPA-VIGVLGTIHLP-YPSRAFDMAQ----CS 274 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~---er-g~~a-~~~v~da~rLP-Fpd~SFDlV~----cs 274 (283)
.+|||+++|.|.=+.+|++.--....+..+|+++..++... +| |+.. .+...|+..++ ...+.||.|. ||
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCS 194 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCS 194 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCC
Confidence 68999999999777666664111114567788887765443 34 7754 45556766653 4456899999 77
Q ss_pred c
Q 038698 275 R 275 (283)
Q Consensus 275 ~ 275 (283)
.
T Consensus 195 G 195 (470)
T PRK11933 195 G 195 (470)
T ss_pred C
Confidence 4
No 206
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=91.60 E-value=0.63 Score=44.14 Aligned_cols=86 Identities=19% Similarity=0.099 Sum_probs=53.6
Q ss_pred HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-CCC--------eEEEeccc
Q 038698 188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-GVP--------AVIGVLGT 258 (283)
Q Consensus 188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-g~~--------a~~~v~da 258 (283)
.|.+.+..+-....+.+++||=||-|.|..++.+++.... -.+.-+|+.++.+..|++. +.. +.+...|+
T Consensus 61 ~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~v-e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 61 IYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPV-ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG 139 (282)
T ss_pred HHHHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCc-ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence 4555554443345566789999999999999999887532 2345567778888888764 211 12222232
Q ss_pred -cCCCCCCCceeeeeec
Q 038698 259 -IHLPYPSRAFDMAQCS 274 (283)
Q Consensus 259 -~rLPFpd~SFDlV~cs 274 (283)
+-+.=...+||+|++-
T Consensus 140 ~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 140 VEFLRDCEEKFDVIIVD 156 (282)
T ss_pred HHHHHhCCCcCCEEEEc
Confidence 2233233389999863
No 207
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=91.39 E-value=0.7 Score=44.35 Aligned_cols=89 Identities=21% Similarity=0.276 Sum_probs=61.4
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEeccccCCCC
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLGTIHLPY 263 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~da~rLPF 263 (283)
|..|.++|....| .+||.-|.|.|+++-.++..-..+.-+.-+|.|+...+.|++ .|++ ..+..-|+...-|
T Consensus 94 ia~I~~~L~i~PG--svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 94 IAMILSMLEIRPG--SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHHhcCCCC--CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 5678888888888 699999999999998888752223345567888877777764 3554 4455556666666
Q ss_pred C--CCceeeeeecccccccc
Q 038698 264 P--SRAFDMAQCSRCLIPWT 281 (283)
Q Consensus 264 p--d~SFDlV~cs~~Li~W~ 281 (283)
. +..+|.|+- ....||.
T Consensus 172 ~~ks~~aDaVFL-DlPaPw~ 190 (314)
T KOG2915|consen 172 LIKSLKADAVFL-DLPAPWE 190 (314)
T ss_pred cccccccceEEE-cCCChhh
Confidence 4 588888875 3334553
No 208
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=91.19 E-value=0.39 Score=46.24 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=40.1
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc---CCeeEeeccccChHHHHHHHHHc
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR---NVLTMSFAPRDNHEAQVQFALER 247 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r---~v~~~sla~~D~s~a~vq~A~er 247 (283)
+.+.+.|++.++. + .+++|+|||.|.=+..|++. ........++|+|.+.++.+.++
T Consensus 64 ~~~~~~Ia~~i~~--~--~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~ 123 (319)
T TIGR03439 64 KKHSSDIAASIPS--G--SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAE 123 (319)
T ss_pred HHHHHHHHHhcCC--C--CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHh
Confidence 3456677777764 3 47999999999877766652 11123568999999999887653
No 209
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=90.90 E-value=0.38 Score=43.38 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=46.7
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEeccc-c
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLGT-I 259 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~da-~ 259 (283)
...+..|.++.. +++||+|||++|+-+.+|++.-.....+.-+|..+...+.|++ .|.. +.+..+++ +
T Consensus 34 g~lL~~l~~~~~-----~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~ 108 (205)
T PF01596_consen 34 GQLLQMLVRLTR-----PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE 108 (205)
T ss_dssp HHHHHHHHHHHT------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH
T ss_pred HHHHHHHHHhcC-----CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh
Confidence 344555555553 3799999999999988888741111133445566666666642 2542 33444442 2
Q ss_pred CCC-----CCCCceeeeee
Q 038698 260 HLP-----YPSRAFDMAQC 273 (283)
Q Consensus 260 rLP-----Fpd~SFDlV~c 273 (283)
-|| .+.+.||+|+-
T Consensus 109 ~l~~l~~~~~~~~fD~VFi 127 (205)
T PF01596_consen 109 VLPELANDGEEGQFDFVFI 127 (205)
T ss_dssp HHHHHHHTTTTTSEEEEEE
T ss_pred hHHHHHhccCCCceeEEEE
Confidence 122 22468999985
No 210
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=90.36 E-value=0.54 Score=43.65 Aligned_cols=82 Identities=12% Similarity=0.034 Sum_probs=45.3
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEecc-cc
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLG-TI 259 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~d-a~ 259 (283)
...+..+.++.+ +++||+||+++|+-+.+|+..-.....+..+|..++..++|++ .|+. +.+..++ .+
T Consensus 68 g~lL~~l~~~~~-----ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 68 GQFLNMLLKLIN-----AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHHHhC-----CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 344555555443 3689999999998888777631111133444555555555542 2543 2333333 22
Q ss_pred CCCC------CCCceeeeee
Q 038698 260 HLPY------PSRAFDMAQC 273 (283)
Q Consensus 260 rLPF------pd~SFDlV~c 273 (283)
-||- .+++||+|+-
T Consensus 143 ~L~~l~~~~~~~~~fD~iFi 162 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFV 162 (247)
T ss_pred HHHHHHhccccCCcccEEEe
Confidence 3331 1368999975
No 211
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=90.20 E-value=0.43 Score=46.61 Aligned_cols=72 Identities=25% Similarity=0.202 Sum_probs=45.3
Q ss_pred CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHH-HHHHH--cCCCeEEEeccccCCCCCCCceeeeeecccccc
Q 038698 203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQV-QFALE--RGVPAVIGVLGTIHLPYPSRAFDMAQCSRCLIP 279 (283)
Q Consensus 203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~v-q~A~e--rg~~a~~~v~da~rLPFpd~SFDlV~cs~~Li~ 279 (283)
.....+|+|.|.|..+..|+.+ ..-++..-+| ...+ +.|.. .|+..+.+++ .+.+|=.| +|++..||-+
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~-fp~ik~infd--lp~v~~~a~~~~~gV~~v~gdm-fq~~P~~d----aI~mkWiLhd 248 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFD--LPFVLAAAPYLAPGVEHVAGDM-FQDTPKGD----AIWMKWILHD 248 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHh-CCCCceeecC--HHHHHhhhhhhcCCcceecccc-cccCCCcC----eEEEEeeccc
Confidence 4689999999999999988874 2222333333 3332 22222 2344444433 33477665 9999999999
Q ss_pred ccc
Q 038698 280 WTS 282 (283)
Q Consensus 280 W~~ 282 (283)
|..
T Consensus 249 wtD 251 (342)
T KOG3178|consen 249 WTD 251 (342)
T ss_pred CCh
Confidence 975
No 212
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=90.14 E-value=0.38 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=15.9
Q ss_pred cccCCCCCCCceeeeeeccccccccc
Q 038698 257 GTIHLPYPSRAFDMAQCSRCLIPWTS 282 (283)
Q Consensus 257 da~rLPFpd~SFDlV~cs~~Li~W~~ 282 (283)
+-+.==||++|.|++||+-+| +|.+
T Consensus 97 SFy~rLfP~~Svh~~~Ss~al-HWLS 121 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYAL-HWLS 121 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-T-TB-S
T ss_pred hhhhccCCCCceEEEEEechh-hhcc
Confidence 344555999999999999999 9976
No 213
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.62 E-value=0.43 Score=48.53 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=52.2
Q ss_pred EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC---C-eEEEeccccCCCCCCCceeeeeeccccc
Q 038698 206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV---P-AVIGVLGTIHLPYPSRAFDMAQCSRCLI 278 (283)
Q Consensus 206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~---~-a~~~v~da~rLPFpd~SFDlV~cs~~Li 278 (283)
++|=+|||---+...|.+-+.. +|.-+|+|.-.+.....++. + ..+..++...|.|+|.|||+|+--..|.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccc
Confidence 8999999998888777774332 45556777766666665542 2 3466778999999999999998766653
No 214
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=88.67 E-value=1.6 Score=43.24 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=36.7
Q ss_pred ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeEEEec--cccCCCCCCCceeeeeec
Q 038698 204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAVIGVL--GTIHLPYPSRAFDMAQCS 274 (283)
Q Consensus 204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~~~v~--da~rLPFpd~SFDlV~cs 274 (283)
.++|||||||.|-+.-.-++.+.. .+..++.+ +|.|.|++. .+...+.+. -++.+-+| ...|++++.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISE 250 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAK--KVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISE 250 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcc--eEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEec
Confidence 379999999999765444443322 22233322 445666532 222223332 35666666 457888875
No 215
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=88.14 E-value=1.2 Score=40.83 Aligned_cols=88 Identities=15% Similarity=0.216 Sum_probs=47.6
Q ss_pred hhHHHHHHHhhCCC---CCCCccEEeecCCCccHHHHHHh--hcCCeeEeeccccChHHHHHH----HHHcCCC-eEEEe
Q 038698 186 ADAYIDELASVIPI---KDGSVRTALDTGCGVASWGAYLL--KRNVLTMSFAPRDNHEAQVQF----ALERGVP-AVIGV 255 (283)
Q Consensus 186 a~~Yid~I~~~l~~---~~g~~r~VLDVGCGtGsfaa~L~--~r~v~~~sla~~D~s~a~vq~----A~erg~~-a~~~v 255 (283)
.+-|.++|.+-+.. .++...+++|||.|.|.-|.-|+ ..+. .++.+|...-.+.| +.+-+.+ +.+..
T Consensus 47 ~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~---~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~ 123 (215)
T COG0357 47 EELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDL---KVTLLESLGKKIAFLREVKKELGLENVEIVH 123 (215)
T ss_pred HHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCC---cEEEEccCchHHHHHHHHHHHhCCCCeEEeh
Confidence 34555555555442 22114799999999998776655 2222 23445554444333 3345776 44444
Q ss_pred ccccCCCCCCCceeeeeeccc
Q 038698 256 LGTIHLPYPSRAFDMAQCSRC 276 (283)
Q Consensus 256 ~da~rLPFpd~SFDlV~cs~~ 276 (283)
.-++.+.=...-||+|+|..+
T Consensus 124 ~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 124 GRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred hhHhhcccccccCcEEEeehc
Confidence 445554321111999998654
No 216
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=88.04 E-value=0.42 Score=46.94 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=46.4
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCC--eEEEeccccCCCCCCCceeeeeecccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVLGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~da~rLPFpd~SFDlV~cs~~L 277 (283)
..+||+|||.|-...+...... -...+.+....++..+.+ .++. ..+.+.+....||+|++||.|.+..+.
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 3789999999987776665321 123455555555444322 2222 234555788999999999999987765
No 217
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.02 E-value=3 Score=41.40 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=34.2
Q ss_pred eccccChHHHHHHHHH----cCCC--eEEEeccccCCCCCCCceeeeeec
Q 038698 231 FAPRDNHEAQVQFALE----RGVP--AVIGVLGTIHLPYPSRAFDMAQCS 274 (283)
Q Consensus 231 la~~D~s~a~vq~A~e----rg~~--a~~~v~da~rLPFpd~SFDlV~cs 274 (283)
+.+.|++..+++.|+. .|+. ..|.++++.+|+=+-+.+|+|+|+
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 5688999999988753 3665 557788888886544899999997
No 218
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=87.48 E-value=1.3 Score=40.38 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=25.0
Q ss_pred ccEEeecCCCccHHHHHHhhcCCe-eEeeccccChHHHHH
Q 038698 204 VRTALDTGCGVASWGAYLLKRNVL-TMSFAPRDNHEAQVQ 242 (283)
Q Consensus 204 ~r~VLDVGCGtGsfaa~L~~r~v~-~~sla~~D~s~a~vq 242 (283)
+..+|+||||+|.-+..|++.... ++. -..|+.+....
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~-latDiNp~A~~ 82 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALY-LATDINPEALE 82 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceE-EEecCCHHHHH
Confidence 578999999999888888875221 111 13466665544
No 219
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=87.20 E-value=0.83 Score=45.31 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=20.2
Q ss_pred ccCCCCCCCceeeeeeccccccccc
Q 038698 258 TIHLPYPSRAFDMAQCSRCLIPWTS 282 (283)
Q Consensus 258 a~rLPFpd~SFDlV~cs~~Li~W~~ 282 (283)
-+.==||++|.+++||+-+| +|.+
T Consensus 153 FY~RLfP~~Slh~~~Ss~sl-HWLS 176 (386)
T PLN02668 153 FYRRLFPARSIDVFHSAFSL-HWLS 176 (386)
T ss_pred ccccccCCCceEEEEeeccc-eecc
Confidence 34445999999999999999 9975
No 220
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=86.89 E-value=0.75 Score=44.16 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=44.9
Q ss_pred chhHHHHHHHhhCCCCCCC---ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH---cC--CC--eEEE
Q 038698 185 GADAYIDELASVIPIKDGS---VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE---RG--VP--AVIG 254 (283)
Q Consensus 185 ga~~Yid~I~~~l~~~~g~---~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e---rg--~~--a~~~ 254 (283)
+.-.||..|.++|...... .-++||||+|.-..=..|..+ ...-.+.+.|+.+..++.|.+ ++ +. +.+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~-~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~ 159 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAK-LYGWSFVATDIDPKSLESARENVERNPNLESRIELR 159 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHH-HH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhh-hcCCeEEEecCCHHHHHHHHHHHHhccccccceEEE
Confidence 3467888888888753221 357999999977443334332 123456777888888887763 23 22 2221
Q ss_pred -ecc----ccCCCCCCCceeeeeec
Q 038698 255 -VLG----TIHLPYPSRAFDMAQCS 274 (283)
Q Consensus 255 -v~d----a~rLPFpd~SFDlV~cs 274 (283)
+-+ ...+--++..||+..|+
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCN 184 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCN 184 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE-
T ss_pred EcCCccccchhhhcccceeeEEecC
Confidence 111 11222345689999986
No 221
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=86.33 E-value=0.79 Score=47.06 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=48.9
Q ss_pred CCeeeeCCCCCCCCCc----hhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH
Q 038698 170 GNVFKFPGGGTMFPQG----ADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL 245 (283)
Q Consensus 170 ~~~~~Fpgggt~F~~g----a~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~ 245 (283)
|=+|+|+- +.|++- |.-.-..|.+++.+..+ ..+||+=||||+++..|+++- ..+.|+.++++.+..|.
T Consensus 350 ~ltF~iSp--~AFFQ~Nt~~aevLys~i~e~~~l~~~--k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~ 422 (534)
T KOG2187|consen 350 GLTFRISP--GAFFQTNTSAAEVLYSTIGEWAGLPAD--KTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAE 422 (534)
T ss_pred CeEEEECC--chhhccCcHHHHHHHHHHHHHhCCCCC--cEEEEEeecCCceehhhhccc---cceeeeecChhhcchhh
Confidence 33666765 234442 23334456666666444 689999999999999998862 23456666666666654
Q ss_pred H----cCC-CeEEEec
Q 038698 246 E----RGV-PAVIGVL 256 (283)
Q Consensus 246 e----rg~-~a~~~v~ 256 (283)
+ .|+ ++.|.++
T Consensus 423 ~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 423 KNAQINGISNATFIVG 438 (534)
T ss_pred hcchhcCccceeeeec
Confidence 3 355 3445554
No 222
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=86.09 E-value=0.69 Score=43.11 Aligned_cols=92 Identities=16% Similarity=0.197 Sum_probs=51.5
Q ss_pred eCCCCCCCCCchhHHHHHHHhhCCC---CCC-CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCC
Q 038698 175 FPGGGTMFPQGADAYIDELASVIPI---KDG-SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVP 250 (283)
Q Consensus 175 Fpgggt~F~~ga~~Yid~I~~~l~~---~~g-~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~ 250 (283)
|-|-|.||--.-+++ .+++.+ .++ ++.++||+|.|.|-.+..|+..-- .+..-++|..|...-.+++..
T Consensus 84 ~lgrGsMFifSe~QF----~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk~yn 156 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQF----RKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKKNYN 156 (288)
T ss_pred ccccCceEEecHHHH----HHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhcCCc
Confidence 344456654333444 344333 233 467899999999999887766311 133446666666555555543
Q ss_pred eEEEeccccCCCCCCCceeeeeecccc
Q 038698 251 AVIGVLGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 251 a~~~v~da~rLPFpd~SFDlV~cs~~L 277 (283)
+ +...+-.+ -|=.||+|.|--.|
T Consensus 157 V-l~~~ew~~---t~~k~dli~clNlL 179 (288)
T KOG3987|consen 157 V-LTEIEWLQ---TDVKLDLILCLNLL 179 (288)
T ss_pred e-eeehhhhh---cCceeehHHHHHHH
Confidence 2 33223222 23348999886544
No 223
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=84.31 E-value=2 Score=37.86 Aligned_cols=100 Identities=19% Similarity=0.268 Sum_probs=52.5
Q ss_pred cCCeeeeCCCCCCCCCchhHHHHHHHhhCCCC--CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH-
Q 038698 169 QGNVFKFPGGGTMFPQGADAYIDELASVIPIK--DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL- 245 (283)
Q Consensus 169 ~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~--~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~- 245 (283)
.|-++..|.|...=|.. +.--+.|-.+|... .| .++||+=||+|++|.--++|+..- +.-+|.+...++..+
T Consensus 9 kgr~l~~p~~~~~RPT~-drvrealFniL~~~~~~g--~~vLDLFaGSGalGlEALSRGA~~--v~fVE~~~~a~~~i~~ 83 (183)
T PF03602_consen 9 KGRKLKTPKGDNTRPTT-DRVREALFNILQPRNLEG--ARVLDLFAGSGALGLEALSRGAKS--VVFVEKNRKAIKIIKK 83 (183)
T ss_dssp TT-EEE-TT--TS-SSS-HHHHHHHHHHHHCH-HTT---EEEETT-TTSHHHHHHHHTT-SE--EEEEES-HHHHHHHHH
T ss_pred CCCEecCCCCCCcCCCc-HHHHHHHHHHhcccccCC--CeEEEcCCccCccHHHHHhcCCCe--EEEEECCHHHHHHHHH
Confidence 46677778765443322 33344555555532 23 689999999999998888887653 345566665544332
Q ss_pred --H-cCCC--eEEEecc----ccCCCCCCCceeeeee
Q 038698 246 --E-RGVP--AVIGVLG----TIHLPYPSRAFDMAQC 273 (283)
Q Consensus 246 --e-rg~~--a~~~v~d----a~rLPFpd~SFDlV~c 273 (283)
+ -+.. ..+...| ..++.-....||+|+.
T Consensus 84 N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 84 NLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred HHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 2 2433 3343344 2223235789999975
No 224
>PRK10742 putative methyltransferase; Provisional
Probab=84.00 E-value=4 Score=38.38 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=30.6
Q ss_pred HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCee
Q 038698 191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLT 228 (283)
Q Consensus 191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~ 228 (283)
|.|.+.+.++.|..-+|||.=+|.|..+.-|+.++..+
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V 113 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRV 113 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEE
Confidence 56778888776643489999999999999999987653
No 225
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=83.83 E-value=1.6 Score=39.43 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=17.1
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHH
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWG 218 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfa 218 (283)
+..|.+.+.+..+ .+.+|+|||.|...
T Consensus 31 ~~~il~~~~l~~~--dvF~DlGSG~G~~v 57 (205)
T PF08123_consen 31 VSKILDELNLTPD--DVFYDLGSGVGNVV 57 (205)
T ss_dssp HHHHHHHTT--TT---EEEEES-TTSHHH
T ss_pred HHHHHHHhCCCCC--CEEEECCCCCCHHH
Confidence 5566677776433 79999999999653
No 226
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=81.31 E-value=2.6 Score=38.10 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=39.3
Q ss_pred EeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC--eEEEeccccCCCCCCCc-eeeeeeccc
Q 038698 207 ALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP--AVIGVLGTIHLPYPSRA-FDMAQCSRC 276 (283)
Q Consensus 207 VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~--a~~~v~da~rLPFpd~S-FDlV~cs~~ 276 (283)
|.||||--|++..+|.+++... .+...|+++.-++.|.+. |.. ..+..+|.-. +++.+- .|.|+-+.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~-~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAP-KAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEE-EEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecC
Confidence 6899999999999999987643 345568888777776532 532 3333334222 344443 677765543
No 227
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.91 E-value=0.76 Score=41.27 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=57.1
Q ss_pred ecCCeeeeCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEee---ccccChHHHHHHH
Q 038698 168 FQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSF---APRDNHEAQVQFA 244 (283)
Q Consensus 168 ~~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sl---a~~D~s~a~vq~A 244 (283)
-.|+.-++|+ .+|-+| .+.+-....-| +.||.+|.|-=.++..|....++..++ .|.+.+...++..
T Consensus 4 ntgnvciwps------eeala~--~~l~~~n~~rg--~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki 73 (201)
T KOG3201|consen 4 NTGNVCIWPS------EEALAW--TILRDPNKIRG--RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKI 73 (201)
T ss_pred CCCcEEeccc------HHHHHH--HHHhchhHHhH--HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHH
Confidence 3577778888 334444 23333222223 789999999877887777754444344 3555555555544
Q ss_pred HHcCCC--eE-EEec----cccCCCCCCCceeeeeecccc
Q 038698 245 LERGVP--AV-IGVL----GTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 245 ~erg~~--a~-~~v~----da~rLPFpd~SFDlV~cs~~L 277 (283)
.-++.. .. ..++ -..+.--..++||+|.|+.|+
T Consensus 74 ~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaADCl 113 (201)
T KOG3201|consen 74 RNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAADCL 113 (201)
T ss_pred HhcccccccceehhhHHHHhhhHHHHhhCcccEEEeccch
Confidence 433310 00 1011 123334456799999999997
No 228
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=80.79 E-value=2.5 Score=35.20 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=22.7
Q ss_pred ccEEeecCCCccHHHHHHhhcCCeeEeeccccC
Q 038698 204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDN 236 (283)
Q Consensus 204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~ 236 (283)
...-.|+|||.|.+.-.|.+.+..+. |+|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~---GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGW---GIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcc---cccc
Confidence 35689999999998888888766553 5553
No 229
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=80.49 E-value=2.6 Score=39.68 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=38.7
Q ss_pred CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCCeEEEeccccCCCCCCCceeeee
Q 038698 203 SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVPAVIGVLGTIHLPYPSRAFDMAQ 272 (283)
Q Consensus 203 ~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~a~~~v~da~rLPFpd~SFDlV~ 272 (283)
.+.+|||||||.==++........ .....+.|++..++++... .+++..+.+.|...=| +...-|+.+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaL 176 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLAL 176 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEE
T ss_pred CCchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhh
Confidence 368999999998877766555432 2256789999988876532 2555544444422211 345566654
No 230
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=78.31 E-value=2.4 Score=40.09 Aligned_cols=71 Identities=23% Similarity=0.345 Sum_probs=41.5
Q ss_pred eeeCCC--CCCCCCchhHHHHHHHhhCCCCCC----CccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH
Q 038698 173 FKFPGG--GTMFPQGADAYIDELASVIPIKDG----SVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL 245 (283)
Q Consensus 173 ~~Fpgg--gt~F~~ga~~Yid~I~~~l~~~~g----~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~ 245 (283)
|-||-| =.+.| |..+||..|+++|....| ..-++||||-|.--.=. |....--+-++.|.|+++..++.|.
T Consensus 43 wdiPeg~LCPpvP-gRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYP-liG~~eYgwrfvGseid~~sl~sA~ 119 (292)
T COG3129 43 WDIPEGFLCPPVP-GRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYP-LIGVHEYGWRFVGSEIDSQSLSSAK 119 (292)
T ss_pred ecCCCCCcCCCCC-ChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccc-cccceeecceeecCccCHHHHHHHH
Confidence 455654 23444 456788899999875333 33578999988543211 2221112346677777776665553
No 231
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=78.25 E-value=4.6 Score=37.56 Aligned_cols=82 Identities=20% Similarity=0.171 Sum_probs=39.0
Q ss_pred HHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChH---HHHHHHHHc---CCC--------eEEEec
Q 038698 191 DELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHE---AQVQFALER---GVP--------AVIGVL 256 (283)
Q Consensus 191 d~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~---a~vq~A~er---g~~--------a~~~v~ 256 (283)
|.|.+.+.++.|...+|||.=+|-|.=+..|+..+..+ .+.+-++ +.++-++++ ... ..+...
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V---~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKV---TGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--E---EEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeE---EEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 56777777766644589999999998766666544332 2333332 222322222 111 123333
Q ss_pred c-ccCCCCCCCceeeeeecc
Q 038698 257 G-TIHLPYPSRAFDMAQCSR 275 (283)
Q Consensus 257 d-a~rLPFpd~SFDlV~cs~ 275 (283)
+ .+-|+.++++||+|..--
T Consensus 140 d~~~~L~~~~~s~DVVY~DP 159 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDP 159 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--
T ss_pred CHHHHHhhcCCCCCEEEECC
Confidence 4 344677899999998643
No 232
>PRK00536 speE spermidine synthase; Provisional
Probab=76.51 E-value=4.6 Score=38.01 Aligned_cols=56 Identities=11% Similarity=-0.044 Sum_probs=41.7
Q ss_pred HHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH
Q 038698 188 AYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE 246 (283)
Q Consensus 188 ~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e 246 (283)
.|.+.|...--...+.+++||=||.|.|..++.++++.- .+.-+|+.++.++.+++
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~ 112 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFIS 112 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHH
Confidence 466666544323446789999999999999999988752 55667788888888875
No 233
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=76.25 E-value=2.3 Score=39.18 Aligned_cols=87 Identities=16% Similarity=0.057 Sum_probs=50.7
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc-----C----CCeEEEecc
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER-----G----VPAVIGVLG 257 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er-----g----~~a~~~v~d 257 (283)
..|.+.|....-....++++||=||-|.|..+..|++... ...+..+|+.++.++.|++- . ....+...|
T Consensus 60 ~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D 138 (246)
T PF01564_consen 60 FIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD 138 (246)
T ss_dssp HHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST
T ss_pred HHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh
Confidence 5677666544322223568999999999999999988641 22456678888888887642 1 123343344
Q ss_pred ccC-CCCCCC-ceeeeeec
Q 038698 258 TIH-LPYPSR-AFDMAQCS 274 (283)
Q Consensus 258 a~r-LPFpd~-SFDlV~cs 274 (283)
+.. |-=..+ .||+|+.-
T Consensus 139 g~~~l~~~~~~~yDvIi~D 157 (246)
T PF01564_consen 139 GRKFLKETQEEKYDVIIVD 157 (246)
T ss_dssp HHHHHHTSSST-EEEEEEE
T ss_pred hHHHHHhccCCcccEEEEe
Confidence 211 111223 89999863
No 234
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=75.05 E-value=13 Score=35.03 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=48.5
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeE-EEeccccCCC---CC
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAV-IGVLGTIHLP---YP 264 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~-~~v~da~rLP---Fp 264 (283)
.+....+...+... .+++||||.-||-|+..|+++++. .+.++|..-.|+.--++...... +...+++.|- |.
T Consensus 66 KL~~ale~F~l~~k-~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~ 142 (245)
T COG1189 66 KLEKALEEFELDVK-GKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT 142 (245)
T ss_pred HHHHHHHhcCcCCC-CCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc
Confidence 35556666665322 289999999999999999998654 24455655554433333333222 2112233221 22
Q ss_pred CCceeeeeeccccc
Q 038698 265 SRAFDMAQCSRCLI 278 (283)
Q Consensus 265 d~SFDlV~cs~~Li 278 (283)
. -.|+++|--.+|
T Consensus 143 ~-~~d~~v~DvSFI 155 (245)
T COG1189 143 E-KPDLIVIDVSFI 155 (245)
T ss_pred c-CCCeEEEEeehh
Confidence 2 567777755443
No 235
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=71.75 E-value=6.9 Score=36.17 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=32.4
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCC---CCCceeeeeecccc
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPY---PSRAFDMAQCSRCL 277 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPF---pd~SFDlV~cs~~L 277 (283)
-++|||||=....... .. ..+++..+|+..+ +.++ ...|--..|. +++.||+|.||.+|
T Consensus 53 lrlLEVGals~~N~~s--~~--~~fdvt~IDLns~------~~~I----~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TS--GWFDVTRIDLNSQ------HPGI----LQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred ceEEeecccCCCCccc--cc--CceeeEEeecCCC------CCCc----eeeccccCCCCCCcccceeEEEEEEEE
Confidence 5799999874432211 11 1223445555431 1121 1224334444 57899999999998
No 236
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=71.59 E-value=21 Score=32.25 Aligned_cols=100 Identities=21% Similarity=0.256 Sum_probs=58.8
Q ss_pred cCCeeeeCCCCCCCCCchhHHHHHHHhhCCC--CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH
Q 038698 169 QGNVFKFPGGGTMFPQGADAYIDELASVIPI--KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE 246 (283)
Q Consensus 169 ~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~--~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e 246 (283)
.|-++.+|.|.+.=|. .+.--+.|-.+|.. ..| .++||+=+|+|+++.-=++|+..-+ ..+|.+...++..++
T Consensus 10 kgr~L~~p~~~~~RPT-~drVREalFNil~~~~i~g--~~~LDlFAGSGaLGlEAlSRGA~~~--~~vE~~~~a~~~l~~ 84 (187)
T COG0742 10 KGRKLKTPDGPGTRPT-TDRVREALFNILAPDEIEG--ARVLDLFAGSGALGLEALSRGAARV--VFVEKDRKAVKILKE 84 (187)
T ss_pred cCCcccCCCCCCcCCC-chHHHHHHHHhccccccCC--CEEEEecCCccHhHHHHHhCCCceE--EEEecCHHHHHHHHH
Confidence 4667778887444332 24445666677764 334 6899999999999998888876533 344555554444332
Q ss_pred c----C--CCeEEEecccc-CCCCCCC--ceeeeee
Q 038698 247 R----G--VPAVIGVLGTI-HLPYPSR--AFDMAQC 273 (283)
Q Consensus 247 r----g--~~a~~~v~da~-rLPFpd~--SFDlV~c 273 (283)
. + ..+.+...++. .|+-... .||+|+.
T Consensus 85 N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 85 NLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred HHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 1 3 22334444433 3333333 4999874
No 237
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=71.09 E-value=6.3 Score=35.99 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=34.4
Q ss_pred hhHHHHHHHhhCCC-CCCCccEEeecCCCccHHHHHHhhc-----CCeeEeeccccCh
Q 038698 186 ADAYIDELASVIPI-KDGSVRTALDTGCGVASWGAYLLKR-----NVLTMSFAPRDNH 237 (283)
Q Consensus 186 a~~Yid~I~~~l~~-~~g~~r~VLDVGCGtGsfaa~L~~r-----~v~~~sla~~D~s 237 (283)
|...+.+|.+-..+ ++| .+|+|+|+-.|+|+.++.++ .|.++++-+.+..
T Consensus 29 Aa~KL~el~~k~~i~~~~--~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~ 84 (205)
T COG0293 29 AAYKLLELNEKFKLFKPG--MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI 84 (205)
T ss_pred HHHHHHHHHHhcCeecCC--CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC
Confidence 34446677776664 334 78999999999999888875 1456666665543
No 238
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=68.06 E-value=11 Score=35.14 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=41.7
Q ss_pred EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCC--CCceeeeeec
Q 038698 206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYP--SRAFDMAQCS 274 (283)
Q Consensus 206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFp--d~SFDlV~cs 274 (283)
++||+-||.|.+..-|.+.+... +..+|+.+..++.... +.+..+...|.+.+.-. ...+|+++.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~--v~a~e~~~~a~~~~~~-N~~~~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEI--VAANEIDKSAAETYEA-NFPNKLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEE--EEEEeCCHHHHHHHHH-hCCCCCccCccccCchhhcCCCCCEEEeC
Confidence 58999999999877777766543 4567777776654443 32222223454444322 3569999875
No 239
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=66.28 E-value=13 Score=35.81 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=41.8
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER 247 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er 247 (283)
++++.+.+....| .+++|.=||.|.-+..|+++-.. ..+.++|..+..++.|.++
T Consensus 9 l~Evl~~L~~~~g--giyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 9 LDEVVEGLNIKPD--GIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred HHHHHHhcCcCCC--CEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence 5566667765554 48999999999999888876222 4578899999999888764
No 240
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=66.16 E-value=3.9 Score=38.77 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=47.6
Q ss_pred hhHHHHHHHhhCC--CCCCCccEEeecCCCccHHHHHHhhcCC-eeEeeccccChHHHHHHHH----HcCC---CeEEEe
Q 038698 186 ADAYIDELASVIP--IKDGSVRTALDTGCGVASWGAYLLKRNV-LTMSFAPRDNHEAQVQFAL----ERGV---PAVIGV 255 (283)
Q Consensus 186 a~~Yid~I~~~l~--~~~g~~r~VLDVGCGtGsfaa~L~~r~v-~~~sla~~D~s~a~vq~A~----erg~---~a~~~v 255 (283)
.+-+.|.+.++-. .+.| .+|||.=.|-|+++..-++++. .++++.- | +..++.|. .++. ..-+-.
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G--~rVLDtC~GLGYtAi~a~~rGA~~VitvEk-d--p~VLeLa~lNPwSr~l~~~~i~iil 191 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRG--ERVLDTCTGLGYTAIEALERGAIHVITVEK-D--PNVLELAKLNPWSRELFEIAIKIIL 191 (287)
T ss_pred cCcHHHHHhhhheeccccC--CEeeeeccCccHHHHHHHHcCCcEEEEEee-C--CCeEEeeccCCCCccccccccEEec
Confidence 3456666665533 2334 5899999999999998888876 4444321 1 22233332 1221 111222
Q ss_pred ccccCC--CCCCCceeeee
Q 038698 256 LGTIHL--PYPSRAFDMAQ 272 (283)
Q Consensus 256 ~da~rL--PFpd~SFDlV~ 272 (283)
+|+.++ .|+|.|||+|+
T Consensus 192 GD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 192 GDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccHHHHHhcCCccccceEe
Confidence 354443 58999999986
No 241
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=63.32 E-value=22 Score=34.88 Aligned_cols=91 Identities=15% Similarity=0.077 Sum_probs=59.7
Q ss_pred CCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCe--EE
Q 038698 180 TMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPA--VI 253 (283)
Q Consensus 180 t~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a--~~ 253 (283)
.+|..+-..=-.+|++++.. | .+|||.=+|.|.|+.-++..+... +...|+.+..+....+. ++.. ..
T Consensus 169 v~Fsprl~~ER~Rva~~v~~--G--E~V~DmFAGVGpfsi~~Ak~g~~~--V~A~diNP~A~~~L~eNi~LN~v~~~v~~ 242 (341)
T COG2520 169 VYFSPRLSTERARVAELVKE--G--ETVLDMFAGVGPFSIPIAKKGRPK--VYAIDINPDAVEYLKENIRLNKVEGRVEP 242 (341)
T ss_pred eEECCCchHHHHHHHhhhcC--C--CEEEEccCCcccchhhhhhcCCce--EEEEecCHHHHHHHHHHHHhcCccceeeE
Confidence 34443332223467777765 5 599999999999998888765432 45567777766554432 3432 24
Q ss_pred EeccccCCCCCCCceeeeeeccc
Q 038698 254 GVLGTIHLPYPSRAFDMAQCSRC 276 (283)
Q Consensus 254 ~v~da~rLPFpd~SFDlV~cs~~ 276 (283)
..+|+...+..-+.||-|+...-
T Consensus 243 i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 243 ILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred EeccHHHhhhccccCCEEEeCCC
Confidence 45688888877799999987643
No 242
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=62.26 E-value=4.9 Score=32.35 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhccccCC
Q 038698 19 IVIVLCGFFYMLGAWQKSG 37 (283)
Q Consensus 19 ~~~~lc~~~~~lg~~~~~~ 37 (283)
.+++||+++|++|.++.+.
T Consensus 4 w~l~Lc~~SF~~G~lft~R 22 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTNR 22 (95)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3678999999999999853
No 243
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=60.09 E-value=33 Score=31.95 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=47.6
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH----cCCCeEEE--eccccCCC
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE----RGVPAVIG--VLGTIHLP 262 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e----rg~~a~~~--v~da~rLP 262 (283)
.+..|+++++. + ..+.||||--|++..+|.+.+..-. ....|+.+.-++.|.+ .+..-.+. .+|. -.|
T Consensus 6 RL~~va~~V~~--~--~~iaDIGsDHAYLp~~Lv~~~~~~~-~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~ 79 (226)
T COG2384 6 RLTTVANLVKQ--G--ARIADIGSDHAYLPIYLVKNNPAST-AVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAV 79 (226)
T ss_pred HHHHHHHHHHc--C--CceeeccCchhHhHHHHHhcCCcce-EEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccc
Confidence 46677777765 3 2399999999999999998754322 2233555544444432 23322222 2333 334
Q ss_pred CC-CCceeeeeeccc
Q 038698 263 YP-SRAFDMAQCSRC 276 (283)
Q Consensus 263 Fp-d~SFDlV~cs~~ 276 (283)
+. ++.+|+|+-..+
T Consensus 80 l~~~d~~d~ivIAGM 94 (226)
T COG2384 80 LELEDEIDVIVIAGM 94 (226)
T ss_pred cCccCCcCEEEEeCC
Confidence 53 447888875543
No 244
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=59.08 E-value=8.9 Score=35.72 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=17.9
Q ss_pred EEeecCCCccHHHHHHhhcCCe
Q 038698 206 TALDTGCGVASWGAYLLKRNVL 227 (283)
Q Consensus 206 ~VLDVGCGtGsfaa~L~~r~v~ 227 (283)
...|||||-|.+...|......
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPd 84 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPD 84 (249)
T ss_pred eEEeeccCccchhhhccccCcc
Confidence 4799999999998888876433
No 245
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=58.72 E-value=14 Score=37.28 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=29.5
Q ss_pred HHHHHHhhCCC-C-CCCccEEeecCCCccHHHHHHhh-cCCeeEeecc
Q 038698 189 YIDELASVIPI-K-DGSVRTALDTGCGVASWGAYLLK-RNVLTMSFAP 233 (283)
Q Consensus 189 Yid~I~~~l~~-~-~g~~r~VLDVGCGtGsfaa~L~~-r~v~~~sla~ 233 (283)
-++.|.+++.. . --++..|.|+|.|-|+++..|.= .+..++.|.+
T Consensus 137 Ei~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIeg 184 (476)
T KOG2651|consen 137 EIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEG 184 (476)
T ss_pred HHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEecc
Confidence 35666666542 1 12467899999999999987763 4555555544
No 246
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=57.02 E-value=17 Score=36.68 Aligned_cols=74 Identities=19% Similarity=0.160 Sum_probs=49.1
Q ss_pred CCeeeeCCCCCCCCCch-hHHHHHHHhhCCCC-CCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH
Q 038698 170 GNVFKFPGGGTMFPQGA-DAYIDELASVIPIK-DGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL 245 (283)
Q Consensus 170 ~~~~~Fpgggt~F~~ga-~~Yid~I~~~l~~~-~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~ 245 (283)
+|+-.+=.||-||...- ..|.+.+.-. +.. -.+.+.||=+|.|.|--++.|++.- ....+..+|+.+++++++.
T Consensus 255 ~d~rLYldG~LQfsTrDe~RYhEsLV~p-als~~~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~ 330 (508)
T COG4262 255 DDLRLYLDGGLQFSTRDEYRYHESLVYP-ALSSVRGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELAS 330 (508)
T ss_pred CceEEEEcCceeeeechhhhhhheeeec-ccccccccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhh
Confidence 45666778899997543 3345433211 121 0235899999999998888888762 2345677788888888875
No 247
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=55.99 E-value=11 Score=35.30 Aligned_cols=75 Identities=19% Similarity=0.147 Sum_probs=44.1
Q ss_pred CCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH---Hc-CCCeE-EEeccccCC-C-CCCCcee
Q 038698 197 IPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL---ER-GVPAV-IGVLGTIHL-P-YPSRAFD 269 (283)
Q Consensus 197 l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~---er-g~~a~-~~v~da~rL-P-Fpd~SFD 269 (283)
+....| .+|||+-++.|.=+..|++.--....+...|++...++... +| |+..+ ....|+.++ | .+...||
T Consensus 81 L~~~~~--~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 81 LDPQPG--ERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp HTTTTT--SEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEE
T ss_pred cccccc--ccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccc
Confidence 344444 57999999999877666664211124566788887655432 33 66544 333555444 2 3444699
Q ss_pred eeee
Q 038698 270 MAQC 273 (283)
Q Consensus 270 lV~c 273 (283)
.|..
T Consensus 159 ~Vlv 162 (283)
T PF01189_consen 159 RVLV 162 (283)
T ss_dssp EEEE
T ss_pred hhhc
Confidence 9874
No 248
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=53.40 E-value=12 Score=34.60 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=17.2
Q ss_pred cEEeecCCCccHHHHHHhhc
Q 038698 205 RTALDTGCGVASWGAYLLKR 224 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r 224 (283)
.+|||+||-.|+|+.--.++
T Consensus 71 ~~VlD~G~APGsWsQVavqr 90 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQR 90 (232)
T ss_pred CEEEEccCCCChHHHHHHHh
Confidence 69999999999998766665
No 249
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=50.77 E-value=9.1 Score=24.77 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=18.2
Q ss_pred ccCCCCCCCccccccCCCCCCC
Q 038698 113 ERHCPPEDEKLHCLIPAPKGYM 134 (283)
Q Consensus 113 eRhCp~~~~~~~Clv~~P~~Y~ 134 (283)
--||||.+.++.-+.|.|+.-+
T Consensus 4 ga~~pppeislna~fptppaa~ 25 (32)
T PF07629_consen 4 GADCPPPEISLNARFPTPPAAR 25 (32)
T ss_pred CCCCCCCcceeccccCCChhhh
Confidence 4589999999999999997533
No 250
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=49.43 E-value=35 Score=35.28 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=33.5
Q ss_pred hHHHHHHHhhCCCCC----CCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHH
Q 038698 187 DAYIDELASVIPIKD----GSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFAL 245 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~----g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~ 245 (283)
.+|..-|...|...+ ++.--|||||.|||.++.+-...+.. ++...+.-+-|+..|+
T Consensus 46 iky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~ar 106 (636)
T KOG1501|consen 46 IKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLAR 106 (636)
T ss_pred HHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHH
Confidence 556666666665422 33345899999999876443333322 2344455556666665
No 251
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=49.19 E-value=43 Score=30.99 Aligned_cols=66 Identities=20% Similarity=0.143 Sum_probs=36.0
Q ss_pred cEEeecCCCccHH--HHHHhhcCCeeEeeccccChHHHHHHHH----HcCCCeEEEeccccCCCCCCCceeeeeecccc
Q 038698 205 RTALDTGCGVASW--GAYLLKRNVLTMSFAPRDNHEAQVQFAL----ERGVPAVIGVLGTIHLPYPSRAFDMAQCSRCL 277 (283)
Q Consensus 205 r~VLDVGCGtGsf--aa~L~~r~v~~~sla~~D~s~a~vq~A~----erg~~a~~~v~da~rLPFpd~SFDlV~cs~~L 277 (283)
++|||+|.|.|.- ++.++.. ..+...|+.+..++... ..|+...+. . ..+=+.+..||+|..+.++
T Consensus 81 krVLd~gagsgLvaIAaa~aGA----~~v~a~d~~P~~~~ai~lNa~angv~i~~~--~-~d~~g~~~~~Dl~LagDlf 152 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGA----AEVVAADIDPWLEQAIRLNAAANGVSILFT--H-ADLIGSPPAFDLLLAGDLF 152 (218)
T ss_pred ceeeecccccChHHHHHHHhhh----HHHHhcCCChHHHHHhhcchhhccceeEEe--e-ccccCCCcceeEEEeecee
Confidence 7999999999943 3333321 11222344444433321 224333332 2 2333488999999988764
No 252
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=45.87 E-value=17 Score=33.57 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=35.4
Q ss_pred cEEeecCCCccHHHHHHhhc--CCeeEeeccccChHHHHHHHHHc----CC-CeEEEeccccCCCCCCCceeeeeecc
Q 038698 205 RTALDTGCGVASWGAYLLKR--NVLTMSFAPRDNHEAQVQFALER----GV-PAVIGVLGTIHLPYPSRAFDMAQCSR 275 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r--~v~~~sla~~D~s~a~vq~A~er----g~-~a~~~v~da~rLPFpd~SFDlV~cs~ 275 (283)
.+.-|+|.|+|-++..-++. .|.++...| .....|.+. |. +..+.+.|+....| ..-|+|+|..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dP-----k~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDP-----KRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCc-----HHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHH
Confidence 47899999999665433332 244443333 222334332 22 12344556666556 6789999853
No 253
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=45.81 E-value=27 Score=34.23 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=42.9
Q ss_pred CCCCCccEEeecCCC-ccHHHHHHhh-cCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeec
Q 038698 199 IKDGSVRTALDTGCG-VASWGAYLLK-RNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCS 274 (283)
Q Consensus 199 ~~~g~~r~VLDVGCG-tGsfaa~L~~-r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs 274 (283)
..+| .+|+=+|+| .|..+.++++ .+ ..+..+|.+++..+.|++-|....+...+...+.--.+.||+|+..
T Consensus 164 ~~pG--~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 164 VKPG--KWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCCC--CEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 3445 466666665 5678888887 33 3556778889989999988865544322222222111238887754
No 254
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=45.76 E-value=68 Score=32.66 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=53.2
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhh----cCCeeEeeccccChHHHHHHHHH----cCCC--eEEEec
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLK----RNVLTMSFAPRDNHEAQVQFALE----RGVP--AVIGVL 256 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~----r~v~~~sla~~D~s~a~vq~A~e----rg~~--a~~~v~ 256 (283)
.+-++.|.+++..+.. .+|+|-=||+|.+...-.+ .. .-..+.|.++.......|+. +|+. +.+...
T Consensus 172 ~~v~~liv~~l~~~~~--~~i~DpacGsgg~l~~a~~~~~~~~-~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~ 248 (489)
T COG0286 172 REVSELIVELLDPEPR--NSIYDPACGSGGMLLQAAKYLKRHQ-DEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG 248 (489)
T ss_pred HHHHHHHHHHcCCCCC--CeecCCCCchhHHHHHHHHHHHhhc-cceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence 3447788888876444 4899999999987543332 22 11457788877766665542 3554 233334
Q ss_pred cccCCCC-----CCCceeeeeeccc
Q 038698 257 GTIHLPY-----PSRAFDMAQCSRC 276 (283)
Q Consensus 257 da~rLPF-----pd~SFDlV~cs~~ 276 (283)
++-.=|. ..+.||.|+++-=
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPP 273 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPP 273 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCC
Confidence 4333343 3477999988653
No 255
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=44.94 E-value=20 Score=35.77 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=45.8
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCC---eEEEeccc-cCCCCCC---Cceeeeee
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVP---AVIGVLGT-IHLPYPS---RAFDMAQC 273 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~---a~~~v~da-~rLPFpd---~SFDlV~c 273 (283)
++|||+=|=||.|+.+-+..+.. +++.+|+|+..++.|.+. |+. ..+.++|+ +-|.... ..||+|+.
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 78999999999999887776541 345678888888877653 442 34555552 2333333 38999975
No 256
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=40.76 E-value=17 Score=34.89 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=15.3
Q ss_pred cEEeecCCCccHHHHHHhhc
Q 038698 205 RTALDTGCGVASWGAYLLKR 224 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r 224 (283)
.+|||+|||.|-.+......
T Consensus 118 k~vLELgCg~~Lp~i~~~~~ 137 (282)
T KOG2920|consen 118 KRVLELGCGAALPGIFAFVK 137 (282)
T ss_pred ceeEecCCcccccchhhhhh
Confidence 68999999999766554443
No 257
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=40.48 E-value=1.1e+02 Score=29.74 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=46.2
Q ss_pred hhCCCCCCCccEEeecCCCccHHHHHHhhcCC-eeEeeccccChHHHHHHH---HHc-CCCe-EEEeccccCCC--CCCC
Q 038698 195 SVIPIKDGSVRTALDTGCGVASWGAYLLKRNV-LTMSFAPRDNHEAQVQFA---LER-GVPA-VIGVLGTIHLP--YPSR 266 (283)
Q Consensus 195 ~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v-~~~sla~~D~s~a~vq~A---~er-g~~a-~~~v~da~rLP--Fpd~ 266 (283)
.++....| .+|||+=.+.|.=+.+|++..- .+.-+..+|.++..++.. ++| |+.+ .....|+.++| .+..
T Consensus 150 ~~L~p~pg--e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 150 LVLDPKPG--ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred HHcCCCCc--CEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccccc
Confidence 44555556 6999999999966656655311 122235678887665543 334 7764 45556666664 2333
Q ss_pred -ceeeeee
Q 038698 267 -AFDMAQC 273 (283)
Q Consensus 267 -SFDlV~c 273 (283)
.||.|..
T Consensus 228 ~~fD~iLl 235 (355)
T COG0144 228 EKFDRILL 235 (355)
T ss_pred CcCcEEEE
Confidence 5999874
No 258
>PRK11524 putative methyltransferase; Provisional
Probab=40.20 E-value=70 Score=29.77 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=26.9
Q ss_pred cEEeecCCCccHHH--HHHhhcCCeeEeeccccChHHHHHHHHHc
Q 038698 205 RTALDTGCGVASWG--AYLLKRNVLTMSFAPRDNHEAQVQFALER 247 (283)
Q Consensus 205 r~VLDVGCGtGsfa--a~L~~r~v~~~sla~~D~s~a~vq~A~er 247 (283)
.+|||-=||+|+.+ |..+.|.. .|+|++++-++.|++|
T Consensus 210 D~VLDPF~GSGTT~~AA~~lgR~~-----IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 210 DIVLDPFAGSFTTGAVAKASGRKF-----IGIEINSEYIKMGLRR 249 (284)
T ss_pred CEEEECCCCCcHHHHHHHHcCCCE-----EEEeCCHHHHHHHHHH
Confidence 69999999999754 44555644 4557777777777766
No 259
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=38.47 E-value=33 Score=25.67 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 038698 16 SILIVIVLCGFFYMLGAW 33 (283)
Q Consensus 16 ~~~~~~~lc~~~~~lg~~ 33 (283)
.+++++++|.++..||++
T Consensus 38 ~v~~~~~~c~~S~~lG~~ 55 (60)
T PF06072_consen 38 IVFAVVALCVLSGGLGAL 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666899999999985
No 260
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=37.11 E-value=49 Score=31.47 Aligned_cols=73 Identities=10% Similarity=0.062 Sum_probs=36.3
Q ss_pred CccEEeecCCCccHHHHHHhh-cCCeeEeeccccChHHHHHHHHH--c-----CCCeEEEeccccCCCCCCCceeeeeec
Q 038698 203 SVRTALDTGCGVASWGAYLLK-RNVLTMSFAPRDNHEAQVQFALE--R-----GVPAVIGVLGTIHLPYPSRAFDMAQCS 274 (283)
Q Consensus 203 ~~r~VLDVGCGtGsfaa~L~~-r~v~~~sla~~D~s~a~vq~A~e--r-----g~~a~~~v~da~rLPFpd~SFDlV~cs 274 (283)
.+++|+=||||.==+++.++. +-.....+.++|++++.++.|++ + +....+..++...++..-..||+|+-+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 357999999996545554443 31223456788999988887743 1 223456666776777766899998865
Q ss_pred c
Q 038698 275 R 275 (283)
Q Consensus 275 ~ 275 (283)
.
T Consensus 200 a 200 (276)
T PF03059_consen 200 A 200 (276)
T ss_dssp T
T ss_pred h
Confidence 4
No 261
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.58 E-value=1.2e+02 Score=28.40 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=12.1
Q ss_pred cEEeecCCCccHHHHH
Q 038698 205 RTALDTGCGVASWGAY 220 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~ 220 (283)
++.||||-=||+-+..
T Consensus 75 k~~lelGvfTGySaL~ 90 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALA 90 (237)
T ss_pred ceEEEEecccCHHHHH
Confidence 6899999888864433
No 262
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=35.76 E-value=14 Score=30.46 Aligned_cols=11 Identities=36% Similarity=0.888 Sum_probs=9.0
Q ss_pred EeecCCCccHH
Q 038698 207 ALDTGCGVASW 217 (283)
Q Consensus 207 VLDVGCGtGsf 217 (283)
-+|||||.|..
T Consensus 6 NIDIGcG~GNT 16 (124)
T PF07101_consen 6 NIDIGCGAGNT 16 (124)
T ss_pred ccccccCCCcc
Confidence 38999999954
No 263
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=34.42 E-value=60 Score=25.20 Aligned_cols=43 Identities=30% Similarity=0.425 Sum_probs=27.7
Q ss_pred hHHHHHHHhhCC-C---CCCCccEEeecCCCccH-HHHHHhhc-CCeeE
Q 038698 187 DAYIDELASVIP-I---KDGSVRTALDTGCGVAS-WGAYLLKR-NVLTM 229 (283)
Q Consensus 187 ~~Yid~I~~~l~-~---~~g~~r~VLDVGCGtGs-faa~L~~r-~v~~~ 229 (283)
+.|++.|.+.+. . .....+.++|...|+|+ +...|+++ ++..+
T Consensus 1 e~Y~~~l~~~~~~~~~~~~~~~kivvD~~~G~~~~~~~~ll~~lg~~~~ 49 (104)
T PF02879_consen 1 EAYIESLLSFIDILEAIKKSGLKIVVDCMNGAGSDILPRLLERLGCDVI 49 (104)
T ss_dssp HHHHHHHHHTSCHHHHHHHTTCEEEEE-TTSTTHHHHHHHHHHTTCEEE
T ss_pred ChHHHHHhhhccchhhcccCCCEEEEECCCCHHHHHHHHHHHHcCCcEE
Confidence 468888988887 2 22346899999999995 34445543 44333
No 264
>PRK13699 putative methylase; Provisional
Probab=34.34 E-value=1.3e+02 Score=27.35 Aligned_cols=38 Identities=18% Similarity=0.034 Sum_probs=24.4
Q ss_pred cEEeecCCCccHHHHH--HhhcCCeeEeeccccChHHHHHHHHHc
Q 038698 205 RTALDTGCGVASWGAY--LLKRNVLTMSFAPRDNHEAQVQFALER 247 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~--L~~r~v~~~sla~~D~s~a~vq~A~er 247 (283)
.+|||-=||+|+.+.. ...|... +++++++-.+.|.+|
T Consensus 165 ~~vlDpf~Gsgtt~~aa~~~~r~~~-----g~e~~~~y~~~~~~r 204 (227)
T PRK13699 165 AIVLDPFAGSGSTCVAALQSGRRYI-----GIELLEQYHRAGQQR 204 (227)
T ss_pred CEEEeCCCCCCHHHHHHHHcCCCEE-----EEecCHHHHHHHHHH
Confidence 5899999999986543 3344433 455666655665544
No 265
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=34.23 E-value=1.2e+02 Score=28.40 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=11.0
Q ss_pred ccEEeecCCCccH
Q 038698 204 VRTALDTGCGVAS 216 (283)
Q Consensus 204 ~r~VLDVGCGtGs 216 (283)
...||.+|.|+|.
T Consensus 87 ~~~vlELGsGtgl 99 (248)
T KOG2793|consen 87 YINVLELGSGTGL 99 (248)
T ss_pred ceeEEEecCCccH
Confidence 4679999999994
No 266
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=33.93 E-value=45 Score=23.80 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=15.0
Q ss_pred CCCchHHHHHHHHHHHHHHHhhc
Q 038698 10 RTRSPLSILIVIVLCGFFYMLGA 32 (283)
Q Consensus 10 ~~~~~~~~~~~~~lc~~~~~lg~ 32 (283)
|+-|...++++++.|.++|.+..
T Consensus 2 kk~rwiili~iv~~Cl~lyl~al 24 (47)
T PRK10299 2 KKFRWVVLVVVVLACLLLWAQVF 24 (47)
T ss_pred ceeeehHHHHHHHHHHHHHHHHH
Confidence 34445556667777888887765
No 267
>COG3346 Uncharacterized conserved protein [Function unknown]
Probab=33.28 E-value=45 Score=31.49 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=19.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhccccC
Q 038698 9 SRTRSPLSILIVIVLCGFFYMLGAWQKS 36 (283)
Q Consensus 9 ~~~~~~~~~~~~~~lc~~~~~lg~~~~~ 36 (283)
.+.+....+++++++...+..||.||=.
T Consensus 9 ~~~~~~~l~~l~~~~~~il~~LGtWQl~ 36 (252)
T COG3346 9 RRRWLALLLLLVLATFAILLGLGTWQLQ 36 (252)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3344445566666777778899999963
No 268
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=33.14 E-value=67 Score=31.13 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=37.5
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER 247 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er 247 (283)
++++.+.|....+ .+.||.=-|.|-.+..++++-.. ..+.++|-.+++++.|.++
T Consensus 9 l~Evl~~L~~~~~--g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~ 63 (310)
T PF01795_consen 9 LKEVLEALNPKPG--GIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKER 63 (310)
T ss_dssp HHHHHHHHT--TT---EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCC
T ss_pred HHHHHHhhCcCCC--ceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHH
Confidence 5566666665444 48999988988888888876333 4678899999999988865
No 269
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=32.25 E-value=45 Score=31.10 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHH-HhhccccCCC
Q 038698 15 LSILIVIVLCGFFY-MLGAWQKSGF 38 (283)
Q Consensus 15 ~~~~~~~~lc~~~~-~lg~~~~~~~ 38 (283)
.+++++++|+++.| ++|+|.+..+
T Consensus 204 ~wl~i~~~l~~~~Y~i~g~~~n~~~ 228 (268)
T PF09451_consen 204 TWLFIILFLFLAAYLIFGSWYNYNR 228 (268)
T ss_pred HHHHHHHHHHHHHHhhhhhheeecc
Confidence 56777777776666 6778888543
No 270
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=31.47 E-value=42 Score=33.85 Aligned_cols=29 Identities=21% Similarity=0.238 Sum_probs=22.1
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCC
Q 038698 10 RTRSPLSILIVIVLCGFFYMLGAWQKSGF 38 (283)
Q Consensus 10 ~~~~~~~~~~~~~lc~~~~~lg~~~~~~~ 38 (283)
..|+.+..=.+++||+++|++|..+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~f~~g~~~~~~~ 39 (408)
T PLN03193 11 SSRSVVSRKWTLLLCLGCFCAGMLFTDRM 39 (408)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhcccc
Confidence 34555555668899999999999998543
No 271
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=30.32 E-value=87 Score=30.53 Aligned_cols=113 Identities=22% Similarity=0.211 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCceeeecccCCchhhhhhh-hcCceeecCCeeeeCCCCCCCCCchhHH----HHHHHhhCCC--CCCCc
Q 038698 132 GYMTPFPWPKGRDYVHYANVPHKSLTVEKA-VQNWVQFQGNVFKFPGGGTMFPQGADAY----IDELASVIPI--KDGSV 204 (283)
Q Consensus 132 ~Y~~P~~wP~sr~~~W~~n~p~~~L~~~k~-~q~w~~~~~~~~~Fpgggt~F~~ga~~Y----id~I~~~l~~--~~g~~ 204 (283)
|++..|-==.+.|+ -|.|.|-.+..-.+. .++|+.-- |. .|.... .+.|.+.+.. ..|.+
T Consensus 70 G~~tGFDSGstLDY-VYrN~p~G~~~~GrliDr~yLnai---------GW---rGIR~Rk~~l~~~i~~ai~~L~~~g~p 136 (311)
T PF12147_consen 70 GLETGFDSGSTLDY-VYRNQPQGKGPLGRLIDRNYLNAI---------GW---RGIRQRKVHLEELIRQAIARLREQGRP 136 (311)
T ss_pred chhcCCCCcchHhH-HhcCCCCCcchHHHHHHHhhhccc---------ch---HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 46666664445677 588888766443332 11121100 00 122222 2233332221 23566
Q ss_pred cEEeecCCCccHHHHH-HhhcCCeeEeeccccChHHHHHH----HHHcCCCe--EEEecc
Q 038698 205 RTALDTGCGVASWGAY-LLKRNVLTMSFAPRDNHEAQVQF----ALERGVPA--VIGVLG 257 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~-L~~r~v~~~sla~~D~s~a~vq~----A~erg~~a--~~~v~d 257 (283)
-+||||-||.|.+.-- |.+......++.-.|.++..|+. +.++|... .|...|
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~d 196 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGD 196 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecC
Confidence 7899999999966433 33332212356667888776654 45678753 455554
No 272
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=29.14 E-value=1.7e+02 Score=24.80 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=23.6
Q ss_pred cEEeecCCCccHHHH--HHhhcCCeeEeeccccChHHHHHHHHH
Q 038698 205 RTALDTGCGVASWGA--YLLKRNVLTMSFAPRDNHEAQVQFALE 246 (283)
Q Consensus 205 r~VLDVGCGtGsfaa--~L~~r~v~~~sla~~D~s~a~vq~A~e 246 (283)
.+|||-=||+|+.+. ..+.|. ..++|+++.-++.|.+
T Consensus 193 diVlDpF~GSGTT~~aa~~l~R~-----~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 193 DIVLDPFAGSGTTAVAAEELGRR-----YIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -EEEETT-TTTHHHHHHHHTT-E-----EEEEESSHHHHHHHHH
T ss_pred eeeehhhhccChHHHHHHHcCCe-----EEEEeCCHHHHHHhcC
Confidence 699999999998653 444453 4466777777776653
No 273
>PHA01634 hypothetical protein
Probab=28.63 E-value=83 Score=27.50 Aligned_cols=40 Identities=23% Similarity=0.135 Sum_probs=26.7
Q ss_pred cEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHH
Q 038698 205 RTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALE 246 (283)
Q Consensus 205 r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~e 246 (283)
++|||||.+.|.-+.|.+-++.. .+..+...+...+...+
T Consensus 30 KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEE 69 (156)
T ss_pred CEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHH
Confidence 79999999999988887776543 23344444554454444
No 274
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=28.60 E-value=36 Score=32.33 Aligned_cols=26 Identities=19% Similarity=0.487 Sum_probs=11.6
Q ss_pred HHHHHHhhCCCCCCCccEEeecCCCcc
Q 038698 189 YIDELASVIPIKDGSVRTALDTGCGVA 215 (283)
Q Consensus 189 Yid~I~~~l~~~~g~~r~VLDVGCGtG 215 (283)
++.+..+.+.. ..+++..||+|||-=
T Consensus 55 Fl~RaVr~la~-~~GIrQFLDlGsGlP 80 (267)
T PF04672_consen 55 FLRRAVRYLAE-EAGIRQFLDLGSGLP 80 (267)
T ss_dssp HHHHHHHHHHC-TT---EEEEET--S-
T ss_pred HHHHHHHHHHH-hcCcceEEEcccCCC
Confidence 34444444433 225899999999954
No 275
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=28.35 E-value=41 Score=31.62 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=15.3
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHH
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASW 217 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsf 217 (283)
++.+.+.+....-...++||||||.--+
T Consensus 43 L~~l~~~f~~g~~~g~~llDiGsGPtiy 70 (256)
T PF01234_consen 43 LKNLHETFSSGGVKGETLLDIGSGPTIY 70 (256)
T ss_dssp HHHHHHHHHTSSS-EEEEEEES-TT--G
T ss_pred HHHHHHHhCccCcCCCEEEEeCCCcHHH
Confidence 5555555553222347899999998543
No 276
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=27.95 E-value=1.7e+02 Score=27.58 Aligned_cols=67 Identities=21% Similarity=0.203 Sum_probs=33.2
Q ss_pred CCCCCCCCCchhHHHHHHHhhCCCC-CCCccEEeecCCCccHHHHH--HhhcCCeeEeeccccChHHHHHHHH
Q 038698 176 PGGGTMFPQGADAYIDELASVIPIK-DGSVRTALDTGCGVASWGAY--LLKRNVLTMSFAPRDNHEAQVQFAL 245 (283)
Q Consensus 176 pgggt~F~~ga~~Yid~I~~~l~~~-~g~~r~VLDVGCGtGsfaa~--L~~r~v~~~sla~~D~s~a~vq~A~ 245 (283)
-.|-+.||- .--.+.++.-+... .+.+-++-|==||.|++.-- |+.++-. ..+.+.|+.+++++.|.
T Consensus 25 ApG~p~FPV--RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l-~~v~aSDId~~aL~lA~ 94 (246)
T PF11599_consen 25 APGFPAFPV--RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRL-RRVYASDIDEDALELAR 94 (246)
T ss_dssp BTTB----H--HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGE-EEEEEEES-HHHHHHHH
T ss_pred CCCCCCccH--HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHH-HhHhcccCCHHHHHHHH
Confidence 345566772 22233333333322 23568899999999987542 3333222 24567788888887764
No 277
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=27.80 E-value=80 Score=28.70 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=16.2
Q ss_pred ccEEeecCCCccHHHHHHhh
Q 038698 204 VRTALDTGCGVASWGAYLLK 223 (283)
Q Consensus 204 ~r~VLDVGCGtGsfaa~L~~ 223 (283)
+-+|+++|.|.|+++..+++
T Consensus 19 ~~~ivE~GaG~G~La~diL~ 38 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILR 38 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHH
Confidence 46899999999999988776
No 278
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=27.77 E-value=90 Score=30.82 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=54.4
Q ss_pred ecCCeeeeCCCCCCCCCchhHHHHHHHhhC-------CCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHH
Q 038698 168 FQGNVFKFPGGGTMFPQGADAYIDELASVI-------PIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQ 240 (283)
Q Consensus 168 ~~~~~~~Fpgggt~F~~ga~~Yid~I~~~l-------~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~ 240 (283)
+++....+|..+..|-+-....-.+|.-++ ..+....-++||.=+|+|-=+.+.+..-.....+...|++++.
T Consensus 7 v~~~~~~~~~~~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a 86 (377)
T PF02005_consen 7 VPEANITIPKKAPVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEA 86 (377)
T ss_dssp EE---SSTTTTSSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHH
T ss_pred eCCceeecCCCCCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHH
Confidence 444445677778888887766633333222 1111123589999999997665555441123356778999988
Q ss_pred HHHHHH----cCCCe---EEEeccccCCC-CCCCceeeee
Q 038698 241 VQFALE----RGVPA---VIGVLGTIHLP-YPSRAFDMAQ 272 (283)
Q Consensus 241 vq~A~e----rg~~a---~~~v~da~rLP-Fpd~SFDlV~ 272 (283)
++...+ .++.. .+...|+..|= -..+.||+|-
T Consensus 87 ~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 87 VELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp HHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred HHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE
Confidence 776543 24443 34445654442 3567788874
No 279
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=27.73 E-value=91 Score=29.13 Aligned_cols=72 Identities=15% Similarity=0.130 Sum_probs=36.8
Q ss_pred CCCCCCCccEEeecCCCccHHHHHHhhc-CCeeEeeccccChH----HHHHHHHHc-CCCeEEEeccccCCCC----CCC
Q 038698 197 IPIKDGSVRTALDTGCGVASWGAYLLKR-NVLTMSFAPRDNHE----AQVQFALER-GVPAVIGVLGTIHLPY----PSR 266 (283)
Q Consensus 197 l~~~~g~~r~VLDVGCGtGsfaa~L~~r-~v~~~sla~~D~s~----a~vq~A~er-g~~a~~~v~da~rLPF----pd~ 266 (283)
++++.| .+||-+|..+|+..-.+.+- +..+ .+.+++.++ +.+..|.+| ++-.++. |+ +.|. -=.
T Consensus 69 ~~ik~g--skVLYLGAasGTTVSHvSDIvg~~G-~VYaVEfs~r~~rdL~~la~~R~NIiPIl~--DA-r~P~~Y~~lv~ 142 (229)
T PF01269_consen 69 IPIKPG--SKVLYLGAASGTTVSHVSDIVGPDG-VVYAVEFSPRSMRDLLNLAKKRPNIIPILE--DA-RHPEKYRMLVE 142 (229)
T ss_dssp -S--TT---EEEEETTTTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHSTTEEEEES---T-TSGGGGTTTS-
T ss_pred cCCCCC--CEEEEecccCCCccchhhhccCCCC-cEEEEEecchhHHHHHHHhccCCceeeeec--cC-CChHHhhcccc
Confidence 445556 69999999999888777763 1111 123334443 445667766 3322333 33 3331 123
Q ss_pred ceeeeeec
Q 038698 267 AFDMAQCS 274 (283)
Q Consensus 267 SFDlV~cs 274 (283)
.+|+|++-
T Consensus 143 ~VDvI~~D 150 (229)
T PF01269_consen 143 MVDVIFQD 150 (229)
T ss_dssp -EEEEEEE
T ss_pred cccEEEec
Confidence 78888874
No 280
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=27.62 E-value=53 Score=32.63 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=23.1
Q ss_pred HHHHHHHhhCCC---CCCCccEEeecCCCccHHHHHHhhc
Q 038698 188 AYIDELASVIPI---KDGSVRTALDTGCGVASWGAYLLKR 224 (283)
Q Consensus 188 ~Yid~I~~~l~~---~~g~~r~VLDVGCGtGsfaa~L~~r 224 (283)
.||..|.++|.. .++.+++.+|||.|+-.+-..|-.+
T Consensus 84 nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~r 123 (419)
T KOG2912|consen 84 NYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGAR 123 (419)
T ss_pred hhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhch
Confidence 455566666653 3455677899999977554444443
No 281
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=27.46 E-value=40 Score=34.67 Aligned_cols=76 Identities=25% Similarity=0.389 Sum_probs=46.7
Q ss_pred CccEEeecCCCcc--HHHHHHhhcCCeeEeeccccChHHHHHHHHH--cC-----CCeEEE-eccccCCCCCCCc-eeee
Q 038698 203 SVRTALDTGCGVA--SWGAYLLKRNVLTMSFAPRDNHEAQVQFALE--RG-----VPAVIG-VLGTIHLPYPSRA-FDMA 271 (283)
Q Consensus 203 ~~r~VLDVGCGtG--sfaa~L~~r~v~~~sla~~D~s~a~vq~A~e--rg-----~~a~~~-v~da~rLPFpd~S-FDlV 271 (283)
.++.++|+|-|.| .+++.++.++. .-.+..+|.+.+|..++.. |+ -+..-. ++--+++|-.... +|+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t-~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQT-KREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccc-cceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 4678999998876 46666666642 1124456777777655532 22 111111 2345788875555 9999
Q ss_pred eecccccc
Q 038698 272 QCSRCLIP 279 (283)
Q Consensus 272 ~cs~~Li~ 279 (283)
+|+..|-+
T Consensus 279 i~ah~l~~ 286 (491)
T KOG2539|consen 279 ICAHKLHE 286 (491)
T ss_pred Eeeeeeec
Confidence 99998743
No 282
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=26.17 E-value=1e+02 Score=29.51 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=29.0
Q ss_pred cEEeecCCCc-cHHHHHHhhc-CCeeEeeccccChHHHHHHHHHc
Q 038698 205 RTALDTGCGV-ASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALER 247 (283)
Q Consensus 205 r~VLDVGCGt-Gsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~er 247 (283)
.+||.+|||. |..+..+++. +.. .+...+.++++++++++.
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~--~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAE--RVIAIDRVPERLEMARSH 228 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHc
Confidence 5899999987 8787777774 331 244556667778888776
No 283
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=26.10 E-value=1.4e+02 Score=28.35 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=47.5
Q ss_pred hHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCC----CeEEEecc-ccCC
Q 038698 187 DAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGV----PAVIGVLG-TIHL 261 (283)
Q Consensus 187 ~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~----~a~~~v~d-a~rL 261 (283)
..|.+.+++.+..+. ++||.||=|-|-....++++.+.-- .-++.++...+.-++-|. ++++..+- -.-|
T Consensus 88 tpiMha~A~ai~tkg---grvLnVGFGMgIidT~iQe~~p~~H--~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl 162 (271)
T KOG1709|consen 88 TPIMHALAEAISTKG---GRVLNVGFGMGIIDTFIQEAPPDEH--WIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVL 162 (271)
T ss_pred hHHHHHHHHHHhhCC---ceEEEeccchHHHHHHHhhcCCcce--EEEecCHHHHHHHHhcccccccceEEEecchHhhh
Confidence 346777777777543 5899999999988888888744211 113445555554443332 22222221 1122
Q ss_pred -CCCCCceeeeee
Q 038698 262 -PYPSRAFDMAQC 273 (283)
Q Consensus 262 -PFpd~SFDlV~c 273 (283)
-.+|+.||=|.-
T Consensus 163 ~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 163 NTLPDKHFDGIYY 175 (271)
T ss_pred ccccccCcceeEe
Confidence 368888997753
No 284
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=25.40 E-value=1.1e+02 Score=30.06 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=40.1
Q ss_pred hhCCCCCCCccEEeecCCCccHHHHHHhhc------------CC--eeEe--------eccccChHHHHHHHHHcCCCeE
Q 038698 195 SVIPIKDGSVRTALDTGCGVASWGAYLLKR------------NV--LTMS--------FAPRDNHEAQVQFALERGVPAV 252 (283)
Q Consensus 195 ~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r------------~v--~~~s--------la~~D~s~a~vq~A~erg~~a~ 252 (283)
..+|...+..-.+||+|.=+..-..+|.+- ++ ..+. .-|.|.+++.-+.-++...-.+
T Consensus 130 ~~~Pt~~~~~~~~LDvGANvd~~~~~L~qfA~MG~~ya~~v~~~~~PrVgLLNIG~Ee~KG~e~~kea~~lLk~~~~~nF 209 (338)
T COG0416 130 TLLPTIDGGKTVVLDVGANVDCKPEHLVQFALMGSAYAEKVLGIKNPRVGLLNIGTEEIKGNELVKEAYELLKETPLINF 209 (338)
T ss_pred eeccccCCCceEEEeCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecccccccCCHHHHHHHHHHHhCCCCce
Confidence 334432344467999999887544444331 11 1111 2344444433222222221133
Q ss_pred EEeccccCCCCCCCceeeeeecc
Q 038698 253 IGVLGTIHLPYPSRAFDMAQCSR 275 (283)
Q Consensus 253 ~~v~da~rLPFpd~SFDlV~cs~ 275 (283)
++ .++.=..-++.+|+|+|-.
T Consensus 210 ~G--nvEg~di~~G~~DVvV~DG 230 (338)
T COG0416 210 IG--NVEGRDILDGTVDVVVTDG 230 (338)
T ss_pred ee--eccccccccCCCCEEEeCC
Confidence 33 4455556889999999954
No 285
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=24.87 E-value=55 Score=32.60 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=43.7
Q ss_pred ecCCeeeeCCCCCCCCCchhHHHHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc---CC----eeEeeccccChHHH
Q 038698 168 FQGNVFKFPGGGTMFPQGADAYIDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR---NV----LTMSFAPRDNHEAQ 240 (283)
Q Consensus 168 ~~~~~~~Fpgggt~F~~ga~~Yid~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r---~v----~~~sla~~D~s~a~ 240 (283)
.+||-++=|-=+.+|..-...++-++-+.++. ..+..++.+|-|+|.++..|+.. .. .+.++.-++.|++-
T Consensus 44 ~~GDFiTApels~lFGella~~~~~~wq~~g~--p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 44 RKGDFITAPELSQLFGELLAEQFLQLWQELGR--PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred ccCCeeechhHHHHHHHHHHHHHHHHHHHhcC--CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 45677777776767754444443333333322 12467999999999999887763 11 24456667777754
Q ss_pred H
Q 038698 241 V 241 (283)
Q Consensus 241 v 241 (283)
.
T Consensus 122 ~ 122 (370)
T COG1565 122 R 122 (370)
T ss_pred H
Confidence 3
No 286
>KOG2730 consensus Methylase [General function prediction only]
Probab=24.21 E-value=1.3e+02 Score=28.55 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=41.4
Q ss_pred ccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc----CCCeE--EEecc----ccCCCCCCCceeeeee
Q 038698 204 VRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER----GVPAV--IGVLG----TIHLPYPSRAFDMAQC 273 (283)
Q Consensus 204 ~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er----g~~a~--~~v~d----a~rLPFpd~SFDlV~c 273 (283)
...|+|.=||.|..+.+.+.+...++ .+|+++..+..|++. |++.. +-++| +..|-|.-.-.|+|.-
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~Vi---sIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVI---AIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEE---EEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 35799999999987777777655443 456777666666543 66533 33444 3444454444556654
Q ss_pred c
Q 038698 274 S 274 (283)
Q Consensus 274 s 274 (283)
+
T Consensus 172 s 172 (263)
T KOG2730|consen 172 S 172 (263)
T ss_pred C
Confidence 3
No 287
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=24.20 E-value=1.6e+02 Score=28.83 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=42.5
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHc
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALER 247 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~er 247 (283)
+++..+.|..+.+ .+.||.==|.|..+..++++......+.++|-.+..+++|.++
T Consensus 12 l~E~i~~L~~~~~--giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~ 67 (314)
T COG0275 12 LNEVVELLAPKPD--GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKER 67 (314)
T ss_pred HHHHHHhcccCCC--cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHH
Confidence 5566677766544 5889999999999999888744333577889999989888765
No 288
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.95 E-value=65 Score=28.86 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=20.1
Q ss_pred HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhc
Q 038698 190 IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKR 224 (283)
Q Consensus 190 id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r 224 (283)
++.+.++++... ..+.+|+|.|.|.....-++.
T Consensus 61 v~nVLSll~~n~--~GklvDlGSGDGRiVlaaar~ 93 (199)
T KOG4058|consen 61 VENVLSLLRGNP--KGKLVDLGSGDGRIVLAAARC 93 (199)
T ss_pred HHHHHHHccCCC--CCcEEeccCCCceeehhhhhh
Confidence 444445554322 248999999999765444443
No 289
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=23.21 E-value=1.6e+02 Score=27.79 Aligned_cols=45 Identities=27% Similarity=0.246 Sum_probs=33.9
Q ss_pred cEEeecCCC--ccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCC
Q 038698 205 RTALDTGCG--VASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVP 250 (283)
Q Consensus 205 r~VLDVGCG--tGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~ 250 (283)
.+|+=+|.| .|+++..|.+++.. ..+.+.|.+.+.++.|.+.|+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~-v~i~g~d~~~~~~~~a~~lgv~ 50 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLV-VRIIGRDRSAATLKAALELGVI 50 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCe-EEEEeecCcHHHHHHHhhcCcc
Confidence 356667766 46888888887654 4678999999988888877763
No 290
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.12 E-value=93 Score=24.55 Aligned_cols=53 Identities=19% Similarity=0.079 Sum_probs=29.7
Q ss_pred EEeecCCCccHHHHHHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeec
Q 038698 206 TALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCS 274 (283)
Q Consensus 206 ~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs 274 (283)
+|| +=||.|.-+..|++ .+.+.+.++|++..+...+..+++-....+|+|+.+
T Consensus 5 ~IL-l~C~~G~sSS~l~~---------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~ 57 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVN---------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLA 57 (95)
T ss_pred EEE-EECCCchhHHHHHH---------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEEC
Confidence 444 56888854443332 223456677887665544444443233457888765
No 291
>TIGR03728 glyco_access_1 glycosyltransferase, SP_1767 family. Members of this protein family are putative glycosyltransferases. Some members are found close to genes for the accessory secretory (SecA2) system, and are suggested by Partial Phylogenetic Profiling to correlate with SecA2 systems. Glycosylation, therefore, may occur in the cytosol prior to secretion.
Probab=22.98 E-value=1.2e+02 Score=28.86 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=51.6
Q ss_pred eeecCCeeeeCCCCCCCCCch----------hHH--HHHHHhhCCCCCCCccEEeecCCCccHHHHHHhhcCCeeEeecc
Q 038698 166 VQFQGNVFKFPGGGTMFPQGA----------DAY--IDELASVIPIKDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAP 233 (283)
Q Consensus 166 ~~~~~~~~~Fpgggt~F~~ga----------~~Y--id~I~~~l~~~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~ 233 (283)
+-+||++-+|-=|...|.+.. ++| +++|.+.+.......-..|=+|--..-++..|.+.+..++|+..
T Consensus 137 liVEG~~sR~GvGndLF~naksI~rIicPsknAy~~yd~I~e~i~~~~k~~LiLlaLGPTAkVLayDL~~~GyQaiDIGH 216 (265)
T TIGR03728 137 LIVEGETSRSGVGNDLFDNAKSIKRIICPSKNAFSKYDEILEAIRENAKNKLILLMLGPTAKVLAYDLSDLGYQALDIGH 216 (265)
T ss_pred EEEecccccccCchhhhhCcccEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEecCCchhhhHHHHHhccCcEEeccc
Confidence 568999999866777775521 333 67777776533333355678887666777789999999999988
Q ss_pred ccChHH
Q 038698 234 RDNHEA 239 (283)
Q Consensus 234 ~D~s~a 239 (283)
+|..=+
T Consensus 217 iDsEYE 222 (265)
T TIGR03728 217 IDSEYE 222 (265)
T ss_pred chHHHH
Confidence 886433
No 292
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=22.85 E-value=2.5e+02 Score=24.06 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=25.1
Q ss_pred cEEeecCCCc-cHHHHHHhhc-CCeeEeeccccChHHHHHHHHHcCC
Q 038698 205 RTALDTGCGV-ASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALERGV 249 (283)
Q Consensus 205 r~VLDVGCGt-Gsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~erg~ 249 (283)
.+||.+|+|. |..++++++. +.. +...+.+++..+.+.+.|.
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g~~---v~~~~~~~~~~~~~~~~g~ 179 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAGAR---VIVTDRSDEKLELAKELGA 179 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCe---EEEEcCCHHHHHHHHHhCC
Confidence 6899999985 6566666653 433 2333445555566665553
No 293
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=22.75 E-value=1.4e+02 Score=28.42 Aligned_cols=48 Identities=23% Similarity=0.224 Sum_probs=34.0
Q ss_pred HHHHHhhCCC--CCCCccEEeecCCCccHHHHHHhhcCCeeEeeccccChHHH
Q 038698 190 IDELASVIPI--KDGSVRTALDTGCGVASWGAYLLKRNVLTMSFAPRDNHEAQ 240 (283)
Q Consensus 190 id~I~~~l~~--~~g~~r~VLDVGCGtGsfaa~L~~r~v~~~sla~~D~s~a~ 240 (283)
++.|.+.++. ...+.-+||==|||.|.++--++.++. ...+++.|--|
T Consensus 41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~M 90 (270)
T PF07942_consen 41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFM 90 (270)
T ss_pred HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHH
Confidence 7788888874 222346799999999999998888743 34455555544
No 294
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=22.71 E-value=1.1e+02 Score=28.81 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=18.3
Q ss_pred ccEEeecCCCccHHHHHHhhc
Q 038698 204 VRTALDTGCGVASWGAYLLKR 224 (283)
Q Consensus 204 ~r~VLDVGCGtGsfaa~L~~r 224 (283)
...++++|||.|.++.++.+.
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~~ 39 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQA 39 (259)
T ss_pred CCEEEEECCCchHHHHHHHHH
Confidence 368999999999999988874
No 295
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=22.50 E-value=2.4e+02 Score=25.61 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=33.9
Q ss_pred cEEeecCCC-ccHHHHHHhhc-CCeeEeeccccChHHHHHHHHHcCCCeEEEecc---ccCCCCCCCceeeeeec
Q 038698 205 RTALDTGCG-VASWGAYLLKR-NVLTMSFAPRDNHEAQVQFALERGVPAVIGVLG---TIHLPYPSRAFDMAQCS 274 (283)
Q Consensus 205 r~VLDVGCG-tGsfaa~L~~r-~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~d---a~rLPFpd~SFDlV~cs 274 (283)
.+||-+|+| .|..+..+++. ++. +...+.++++.+++.+.|....+.... ..+ ..+.+|+|+..
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G~~---v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~d~vi~~ 232 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMGFE---TVAITRSPDKRELARKLGADEVVDSGAELDEQA---AAGGADVILVT 232 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHhCCcEEeccCCcchHHh---ccCCCCEEEEC
Confidence 578888987 56655555553 443 333345566666665556433332111 111 12458888763
No 296
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=22.48 E-value=84 Score=24.67 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=5.0
Q ss_pred CCCccHHHH
Q 038698 211 GCGVASWGA 219 (283)
Q Consensus 211 GCGtGsfaa 219 (283)
=||+|.-+.
T Consensus 8 vCgsG~~TS 16 (94)
T PRK10310 8 ACGGAVATS 16 (94)
T ss_pred ECCCchhHH
Confidence 377775333
No 297
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=21.93 E-value=3.2e+02 Score=28.08 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=45.4
Q ss_pred HHHHHhhCCC---CCCCccEEeecCCCcc---HHHHHHh-hcCCeeEeeccccChHHHHH---H-HHHcCCCeE-EEecc
Q 038698 190 IDELASVIPI---KDGSVRTALDTGCGVA---SWGAYLL-KRNVLTMSFAPRDNHEAQVQ---F-ALERGVPAV-IGVLG 257 (283)
Q Consensus 190 id~I~~~l~~---~~g~~r~VLDVGCGtG---sfaa~L~-~r~v~~~sla~~D~s~a~vq---~-A~erg~~a~-~~v~d 257 (283)
++.+..+|+. .+....+|||+=+-.| ++.|.|+ ..++ |...|..+..+. . +.+-|+... ....|
T Consensus 225 LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~----I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D 300 (460)
T KOG1122|consen 225 LQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGV----IFANDSNENRLKSLKANLHRLGVTNTIVSNYD 300 (460)
T ss_pred eccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCce----EEecccchHHHHHHHHHHHHhCCCceEEEccC
Confidence 4444444442 2233368999988877 3444444 3443 334565544432 2 333487544 45557
Q ss_pred ccCCC---CCCCceeeee----ecc
Q 038698 258 TIHLP---YPSRAFDMAQ----CSR 275 (283)
Q Consensus 258 a~rLP---Fpd~SFDlV~----cs~ 275 (283)
...+| |+. +||-|. ||.
T Consensus 301 ~~ef~~~~~~~-~fDRVLLDAPCSG 324 (460)
T KOG1122|consen 301 GREFPEKEFPG-SFDRVLLDAPCSG 324 (460)
T ss_pred cccccccccCc-ccceeeecCCCCC
Confidence 66666 666 999987 665
No 298
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=21.09 E-value=3.5e+02 Score=26.50 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=35.8
Q ss_pred HHHhhCCCCCCCccEEeecCCCccH----HHHHHhhc--CCeeEeeccccC----hHHHH--------HHHHHcCCCeEE
Q 038698 192 ELASVIPIKDGSVRTALDTGCGVAS----WGAYLLKR--NVLTMSFAPRDN----HEAQV--------QFALERGVPAVI 253 (283)
Q Consensus 192 ~I~~~l~~~~g~~r~VLDVGCGtGs----faa~L~~r--~v~~~sla~~D~----s~a~v--------q~A~erg~~a~~ 253 (283)
.|.+.+.-+ ..-.|+|+|-|.|. +...|++| +...+.|++++. +...+ ++|...|++..|
T Consensus 101 aIleA~~g~--~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 101 AILEAFEGE--RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHhccC--cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 444544432 22458999999993 55556665 334555666665 44333 356666887665
Q ss_pred Ee
Q 038698 254 GV 255 (283)
Q Consensus 254 ~v 255 (283)
..
T Consensus 179 ~~ 180 (374)
T PF03514_consen 179 HP 180 (374)
T ss_pred Ee
Confidence 43
No 299
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=21.07 E-value=1.6e+02 Score=29.85 Aligned_cols=66 Identities=24% Similarity=0.254 Sum_probs=43.4
Q ss_pred cEEeecCCC-ccHHHH-HHhhcCCeeEeeccccChHHHHHHHHHcCCCeEEEeccccCCCCCCCceeeeeecc
Q 038698 205 RTALDTGCG-VASWGA-YLLKRNVLTMSFAPRDNHEAQVQFALERGVPAVIGVLGTIHLPYPSRAFDMAQCSR 275 (283)
Q Consensus 205 r~VLDVGCG-tGsfaa-~L~~r~v~~~sla~~D~s~a~vq~A~erg~~a~~~v~da~rLPFpd~SFDlV~cs~ 275 (283)
++||=||-| .|.+.+ +|.++++..+.++......++ ++|.+-|..+. ....|+=.=+.+|+|+++.
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~-~La~~~~~~~~----~l~el~~~l~~~DvVissT 246 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE-ELAKKLGAEAV----ALEELLEALAEADVVISST 246 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-HHHHHhCCeee----cHHHHHHhhhhCCEEEEec
Confidence 689999999 677655 577788888888888776664 66666552111 1223333336688888873
No 300
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.62 E-value=88 Score=25.87 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=3.9
Q ss_pred HHHhhcccc
Q 038698 27 FYMLGAWQK 35 (283)
Q Consensus 27 ~~~lg~~~~ 35 (283)
+++++++.+
T Consensus 15 ~~~~~~~~~ 23 (130)
T PF12273_consen 15 FLFLFYCHN 23 (130)
T ss_pred HHHHHHHHH
Confidence 334444444
Done!