BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038699
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
L L N GKIP + + S+LV LHLS N LSG IP+ +G+L++L L L N + G+I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 62 PEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
P+E+ G IP+ + +L ++LS N L G IP IG L L
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIP 159
L+ LS NS +G IPA+LG L G IP
Sbjct: 519 LK-LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
L L+ N + G IP+ +GSLS+L +L L N L GEIP + + L TL L+ N+++G+I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 62 PEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
P + G IP IG L +L IL LS N+ G IP ++G+ L
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 122 LQDLSYNSLTGEIPAQLGK 140
L DL+ N G IPA + K
Sbjct: 543 L-DLNTNLFNGTIPAAMFK 560
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 23 LVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGXXXXXXXXXXXXXXX 82
L EL+L +N +G+IP + N +EL +L L+ N +SG IP +G
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 83 GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLT 142
G IP ++ ++ L L L N+L G IP + N L + LS N LTGEIP +G+L
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS-LSNNRLTGEIPKWIGRLE 514
Query: 143 RLQXXXXXXXXXXGEIP 159
L G IP
Sbjct: 515 NLAILKLSNNSFSGNIP 531
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 92/250 (36%), Gaps = 71/250 (28%)
Query: 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI------------------- 41
+L L+ NS G IPAE+G L+ L L++N +G IPA +
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577
Query: 42 -------------GNLTELSTL---------SLNGNNIS-----GQIPEEIGGXXXXXXX 74
GNL E + + N NI+ G
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
Query: 75 XXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEI 134
G IP +IG + L ILNL N++ G+IP ++G+L GL L DLS N L G I
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL-DLSSNKLDGRI 696
Query: 135 PAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLEGPLPDGXXXXXXXXX 194
P + LT L EI NNL GP+P+
Sbjct: 697 PQAMSALTMLT-----------EIDLSN-------------NNLSGPIPEMGQFETFPPA 732
Query: 195 AFTNNKDLCG 204
F NN LCG
Sbjct: 733 KFLNNPGLCG 742
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 90/209 (43%), Gaps = 5/209 (2%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAH-IGNLTELSTLSLNGNNISGQ 60
L L+GN G +P GS S L L LSSN SGE+P + + L L L+ N SG+
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 61 IPEEIGGXXXXXXXXX-XXXXXXGPI-PNQIGELRD-LRILNLSQNNLIGTIPFQIGNLV 117
+PE + GPI PN ++ L+ L L N G IP + N
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNN 177
L L LS+N L+G IP+ LG L++L+ GEIP +N+
Sbjct: 419 ELVSLH-LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 178 LEGPLPDGXXXXXXXXXAFTNNKDLCGKV 206
L G +P G +N L G++
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 29/160 (18%)
Query: 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
L ++ N+ IP +G S L L +S N+LSG+ I TEL L+++ N G
Sbjct: 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 61 IPEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIP-FQIGNLVGL 119
IP P+P L+ L+ L+L++N G IP F G L
Sbjct: 263 IP---------------------PLP-----LKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 120 QDLQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIP 159
L DLS N G +P G + L+ GE+P
Sbjct: 297 TGL-DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 37/146 (25%)
Query: 20 LSQLVELHLSSNQLSGEIPAHIGNLT------ELSTLSLNGNNISGQIPEEIGGXXXXXX 73
L+ L L LS+N +SG A++ EL L+++GN ISG +
Sbjct: 150 LNSLEVLDLSANSISG---ANVVGWVLSDGCGELKHLAISGNKISGDV------------ 194
Query: 74 XXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGE 133
+ +L L++S NN IPF +G+ LQ L D+S N L+G+
Sbjct: 195 --------------DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL-DISGNKLSGD 238
Query: 134 IPAQLGKLTRLQXXXXXXXXXXGEIP 159
+ T L+ G IP
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIP 264
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
L L N GKIP + + S+LV LHLS N LSG IP+ +G+L++L L L N + G+I
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 62 PEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
P+E+ G IP+ + +L ++LS N L G IP IG L L
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 122 LQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIP 159
L+ LS NS +G IPA+LG L G IP
Sbjct: 516 LK-LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
L L+ N + G IP+ +GSLS+L +L L N L GEIP + + L TL L+ N+++G+I
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 62 PEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121
P + G IP IG L +L IL LS N+ G IP ++G+ L
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 122 LQDLSYNSLTGEIPAQLGK 140
L DL+ N G IPA + K
Sbjct: 540 L-DLNTNLFNGTIPAAMFK 557
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 23 LVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGXXXXXXXXXXXXXXX 82
L EL+L +N +G+IP + N +EL +L L+ N +SG IP +G
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 83 GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLT 142
G IP ++ ++ L L L N+L G IP + N L + LS N LTGEIP +G+L
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS-LSNNRLTGEIPKWIGRLE 511
Query: 143 RLQXXXXXXXXXXGEIP 159
L G IP
Sbjct: 512 NLAILKLSNNSFSGNIP 528
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 99/270 (36%), Gaps = 73/270 (27%)
Query: 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI------------------- 41
+L L+ NS G IPAE+G L+ L L++N +G IPA +
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 574
Query: 42 -------------GNLTELSTL---------SLNGNNIS-----GQIPEEIGGXXXXXXX 74
GNL E + + N NI+ G
Sbjct: 575 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 634
Query: 75 XXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEI 134
G IP +IG + L ILNL N++ G+IP ++G+L GL L DLS N L G I
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL-DLSSNKLDGRI 693
Query: 135 PAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLEGPLPDGXXXXXXXXX 194
P + LT L EI NNL GP+P+
Sbjct: 694 PQAMSALTMLT-----------EIDLSN-------------NNLSGPIPEMGQFETFPPA 729
Query: 195 AFTNNKDLCGKVQGLRPCNALSTDKGGGHK 224
F NN LCG L C+ + D H+
Sbjct: 730 KFLNNPGLCG--YPLPRCDPSNADGYAHHQ 757
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 90/209 (43%), Gaps = 5/209 (2%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAH-IGNLTELSTLSLNGNNISGQ 60
L L+GN G +P GS S L L LSSN SGE+P + + L L L+ N SG+
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 355
Query: 61 IPEEIGGXXXXXXXXX-XXXXXXGPI-PNQIGELRD-LRILNLSQNNLIGTIPFQIGNLV 117
+PE + GPI PN ++ L+ L L N G IP + N
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNN 177
L L LS+N L+G IP+ LG L++L+ GEIP +N+
Sbjct: 416 ELVSLH-LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 178 LEGPLPDGXXXXXXXXXAFTNNKDLCGKV 206
L G +P G +N L G++
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 29/160 (18%)
Query: 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
L ++ N+ IP +G S L L +S N+LSG+ I TEL L+++ N G
Sbjct: 201 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 259
Query: 61 IPEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIP-FQIGNLVGL 119
IP P+P L+ L+ L+L++N G IP F G L
Sbjct: 260 IP---------------------PLP-----LKSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 120 QDLQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIP 159
L DLS N G +P G + L+ GE+P
Sbjct: 294 TGL-DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 37/146 (25%)
Query: 20 LSQLVELHLSSNQLSGEIPAHIGNLT------ELSTLSLNGNNISGQIPEEIGGXXXXXX 73
L+ L L LS+N +SG A++ EL L+++GN ISG +
Sbjct: 147 LNSLEVLDLSANSISG---ANVVGWVLSDGCGELKHLAISGNKISGDV------------ 191
Query: 74 XXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGE 133
+ +L L++S NN IPF +G+ LQ L D+S N L+G+
Sbjct: 192 --------------DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL-DISGNKLSGD 235
Query: 134 IPAQLGKLTRLQXXXXXXXXXXGEIP 159
+ T L+ G IP
Sbjct: 236 FSRAISTCTELKLLNISSNQFVGPIP 261
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 83/205 (40%), Gaps = 4/205 (1%)
Query: 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
L + ++ G IP + + LV L S N LSG +P I +L L ++ +GN ISG
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 61 IPEEIGGXXXXXXXXXXXX-XXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGL 119
IP+ G G IP L +L ++LS+N L G G+
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 120 QDLQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXXXXXXXXYNNLE 179
Q + L+ NSL ++ ++G L G +P +NNL
Sbjct: 224 QKIH-LAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 180 GPLPDGXXXXXXXXXAFTNNKDLCG 204
G +P G A+ NNK LCG
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLCG 306
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 28/75 (37%)
Query: 109 IPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQXXXXXXXXXXGEIPXXXXXXXXX 168
IP + NL L L N+L G IP + KLT+L G IP
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 169 XXXXXXYNNLEGPLP 183
YN L G LP
Sbjct: 128 VTLDFSYNALSGTLP 142
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 27/110 (24%)
Query: 13 IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGXXXXX 72
I A I L L+L+ N L+ E+PA I NL+ L L L+ N ++
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS------------- 284
Query: 73 XXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDL 122
+P ++G L+ +N++ T+P++ GNL LQ L
Sbjct: 285 ------------LPAELGSCFQLKYFYFF-DNMVTTLPWEFGNLCNLQFL 321
Score = 35.0 bits (79), Expect = 0.034, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
L L GNS+ ++PAEI +LS L L LS N+L+ +PA +G+ +L N ++ +
Sbjct: 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL 308
Query: 62 PEEIG 66
P E G
Sbjct: 309 PWEFG 313
Score = 32.0 bits (71), Expect = 0.32, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 13 IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
+PAE+GS QL + N ++ +P GNL L L + GN + Q
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ 331
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Mutant In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor
Mutant In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor
Mutant In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor
Mutant In Complex With A Protein Antigen
Length = 170
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGN-LTELSTLSLNGNNISG 59
+L L N I P L+QL L L +NQL+ +PA + + LT+L+ LSLN N +
Sbjct: 34 VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 60 QIPE 63
IP
Sbjct: 93 -IPR 95
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISG 59
+L L N I P SL L EL+L SNQL G +P + +LT+L+ L L N ++
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT- 101
Query: 60 QIPEEIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNL 105
+P + +P I L L L L QN L
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
++ L+ N I +++QL+ L LS N+L P L L LSL+GN+IS
Sbjct: 58 LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-V 116
Query: 61 IPE 63
+PE
Sbjct: 117 VPE 119
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 13 IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGG 67
+P E+ + L + LS+N++S N+T+L TL L+ N + P G
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG 100
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGN-LTELSTLSLNGNNISG 59
+L L N I P L+QL L L +NQL+ +PA + + LT+L+ LSLN N +
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 60 QIPE 63
IP
Sbjct: 93 -IPR 95
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGN-LTELSTLSLNGNNISG 59
+L L N I P L+QL L L +NQL+ +PA + + LT+L+ LSLN N +
Sbjct: 42 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 60 QIPE 63
IP
Sbjct: 101 -IPR 103
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNIS 58
LGL N I + L L ELHL +N+LS +PA + +L L + L+ NNI+
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 17 IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIP 62
+ +LSQL L L++NQL E IG LT L+TL L+ N+I+ P
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 17 IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGG 67
+ L++L L++ SNQ+S + + NL++L++L LN N + + E IGG
Sbjct: 261 VKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGG 309
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 17 IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE 63
L+ L EL L +NQL LTEL TL L+ N + ++PE
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPE 198
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 17 IGSLSQLV---ELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGXXXXXX 73
IG QLV EL L NQL P +LT+L+ LSL N + +P+ +
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLK 160
Query: 74 XXXXXXXXXGPIPN-QIGELRDLRILNLSQNNL 105
+P +L +L+ L L N L
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISG 59
LGL+ NSI + + L ELHL++N+L ++P + + + + L+ NNIS
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISG 59
LGL+ NSI + + L ELHL++N+L ++P + + + + L+ NNIS
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPA-HIGNLTELSTLSLNGNNI 57
L L GN + L++L EL L++NQL IPA LT L TLSL+ N +
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQL 167
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNI 57
LGLA N + L+QL +L+L NQL LT+L L LN N +
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPA-HIGNLTELSTLSLNGNNI 57
L L GN + L++L EL L++NQL IPA LT L TLSL+ N +
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQL 167
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNI 57
LGLA N + L+QL +L+L NQL LT+L L LN N +
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 20 LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNI 57
+ L ELHLS NQ+S P + +LT+L LS+N N +
Sbjct: 62 FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL 97
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
Length = 174
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
L L N I P L L +L+ +SN+L+ LT+L+ L LN N++ I
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-I 96
Query: 62 PE 63
P
Sbjct: 97 PR 98
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 14/144 (9%)
Query: 4 LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE 63
L + +G K + L+ L +++ S+NQL+ P + NLT+L + +N N I+ P
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL 103
Query: 64 EIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123
P+ N L +L L LS N + I L GL LQ
Sbjct: 104 ANLTNLTGLTLFNNQITDIDPLKN----LTNLNRLELSSNTI-----SDISALSGLTSLQ 154
Query: 124 DLSY--NSLTGEIP-AQLGKLTRL 144
LS+ N +T P A L L RL
Sbjct: 155 QLSFSSNQVTDLKPLANLTTLERL 178
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
+L L N I IP ++ L L EL+++SNQL LT L + L+ N
Sbjct: 425 VLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483
Query: 61 IPE 63
P
Sbjct: 484 CPR 486
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
+ L N+I P +L + LS+NQ+S P L L++L L GN I+ ++
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 62 PEEI 65
P+ +
Sbjct: 96 PKSL 99
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI 61
+ L N+I P +L + LS+NQ+S P L L++L L GN I+ ++
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 62 PEEI 65
P+ +
Sbjct: 96 PKSL 99
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 14/144 (9%)
Query: 4 LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE 63
L + +G K + L+ L +++ S+NQL+ P + NLT+L + +N N I+ P
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL 103
Query: 64 EIGGXXXXXXXXXXXXXXXGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123
P+ N L +L L LS N + I L GL LQ
Sbjct: 104 ANLTNLTGLTLFNNQITDIDPLKN----LTNLNRLELSSNTI-----SDISALSGLTSLQ 154
Query: 124 DLSY--NSLTGEIP-AQLGKLTRL 144
LS+ N +T P A L L RL
Sbjct: 155 QLSFSSNQVTDLKPLANLTTLERL 178
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
+L L N I IP ++ L L EL+++SNQL LT L + L+ N
Sbjct: 454 VLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512
Query: 61 IP 62
P
Sbjct: 513 CP 514
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 17 IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ 60
+ SL L+E+HL +NQ+S P + N + L ++L I+ Q
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 85 IPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRL 144
+P+ ELR+L L+LSQ L P +L LQ L +++ N L +LT L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL-NMASNQLKSVPDGIFDRLTSL 520
Query: 145 Q 145
Q
Sbjct: 521 Q 521
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.138 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,690,217
Number of Sequences: 62578
Number of extensions: 181092
Number of successful extensions: 454
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 110
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)