Query 038699
Match_columns 237
No_of_seqs 232 out of 2656
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 02:27:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.1E-25 2.4E-30 207.7 12.7 209 3-213 410-620 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.4E-24 3E-29 200.6 13.6 197 2-199 145-342 (968)
3 KOG4194 Membrane glycoprotein 99.9 3.5E-23 7.7E-28 172.0 1.3 204 2-207 154-382 (873)
4 KOG4194 Membrane glycoprotein 99.9 2.1E-22 4.5E-27 167.5 3.1 197 2-199 130-327 (873)
5 KOG0617 Ras suppressor protein 99.8 3.7E-22 8.1E-27 142.7 -3.7 181 17-203 29-213 (264)
6 KOG0444 Cytoskeletal regulator 99.8 1.4E-21 3E-26 164.2 -5.7 211 2-219 108-345 (1255)
7 KOG4237 Extracellular matrix p 99.8 5E-21 1.1E-25 152.5 -2.8 202 2-205 72-362 (498)
8 KOG0444 Cytoskeletal regulator 99.8 4.4E-20 9.6E-25 155.3 -1.8 193 2-199 83-301 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 2.2E-20 4.9E-25 149.3 -5.7 215 2-225 119-347 (565)
10 KOG0617 Ras suppressor protein 99.7 4.4E-20 9.5E-25 132.2 -5.3 175 2-183 38-216 (264)
11 KOG0472 Leucine-rich repeat pr 99.7 1.8E-19 3.9E-24 144.2 -8.2 198 2-209 96-294 (565)
12 KOG0618 Serine/threonine phosp 99.6 9.8E-18 2.1E-22 146.1 -2.2 208 1-214 245-501 (1081)
13 PLN03210 Resistant to P. syrin 99.6 1.8E-14 4E-19 135.0 15.8 193 2-202 616-838 (1153)
14 PLN03210 Resistant to P. syrin 99.6 1.9E-14 4.1E-19 134.9 15.4 78 2-81 639-716 (1153)
15 KOG4237 Extracellular matrix p 99.6 3E-17 6.5E-22 131.2 -3.8 178 1-179 95-359 (498)
16 PRK15370 E3 ubiquitin-protein 99.6 1.2E-14 2.5E-19 129.3 11.7 175 2-199 204-398 (754)
17 cd00116 LRR_RI Leucine-rich re 99.6 1.4E-16 3E-21 129.9 -1.5 16 140-155 219-234 (319)
18 cd00116 LRR_RI Leucine-rich re 99.6 2.3E-16 5E-21 128.5 -0.8 198 2-200 86-318 (319)
19 PRK15370 E3 ubiquitin-protein 99.6 9.2E-15 2E-19 129.9 8.0 183 2-205 225-431 (754)
20 PRK15387 E3 ubiquitin-protein 99.5 1E-13 2.3E-18 122.9 7.9 161 22-205 283-460 (788)
21 PRK15387 E3 ubiquitin-protein 99.5 5.1E-13 1.1E-17 118.6 12.2 171 1-199 205-392 (788)
22 KOG0532 Leucine-rich repeat (L 99.4 1.6E-15 3.5E-20 126.4 -5.1 173 2-184 80-252 (722)
23 KOG0618 Serine/threonine phosp 99.4 6.6E-15 1.4E-19 128.7 -2.7 169 3-177 293-487 (1081)
24 PLN03150 hypothetical protein; 99.4 4.8E-13 1E-17 117.9 8.5 118 95-214 420-539 (623)
25 KOG0532 Leucine-rich repeat (L 99.4 8E-15 1.7E-19 122.3 -4.1 191 2-201 55-246 (722)
26 COG4886 Leucine-rich repeat (L 99.4 6.1E-13 1.3E-17 111.7 5.8 171 2-181 121-292 (394)
27 COG4886 Leucine-rich repeat (L 99.3 1.5E-12 3.2E-17 109.4 6.4 191 2-201 98-289 (394)
28 PF14580 LRR_9: Leucine-rich r 99.3 1.7E-12 3.7E-17 95.7 4.9 108 17-130 15-125 (175)
29 PF14580 LRR_9: Leucine-rich r 99.3 7.5E-13 1.6E-17 97.6 2.7 125 42-172 16-146 (175)
30 PLN03150 hypothetical protein; 99.2 2.8E-11 6E-16 106.9 8.5 108 22-130 419-527 (623)
31 KOG1259 Nischarin, modulator o 99.2 4.6E-12 9.9E-17 98.9 0.8 124 70-200 285-410 (490)
32 KOG1259 Nischarin, modulator o 99.2 2.1E-12 4.5E-17 100.7 -1.3 133 43-182 282-415 (490)
33 PF13855 LRR_8: Leucine rich r 99.1 1.4E-10 3E-15 70.8 3.8 59 22-80 2-60 (61)
34 KOG3207 Beta-tubulin folding c 99.1 4E-11 8.6E-16 97.6 1.4 160 18-179 143-314 (505)
35 PF13855 LRR_8: Leucine rich r 99.0 2.3E-10 5E-15 69.8 3.8 61 45-105 1-61 (61)
36 KOG1909 Ran GTPase-activating 99.0 1.6E-11 3.4E-16 97.3 -2.5 184 17-201 88-310 (382)
37 KOG3207 Beta-tubulin folding c 99.0 3.5E-11 7.7E-16 97.9 -0.7 178 2-180 151-340 (505)
38 KOG0531 Protein phosphatase 1, 99.0 1.1E-10 2.3E-15 98.7 -0.2 165 4-179 79-268 (414)
39 KOG0531 Protein phosphatase 1, 98.9 2.7E-10 5.9E-15 96.2 -0.2 193 1-203 99-319 (414)
40 KOG1909 Ran GTPase-activating 98.8 4.4E-10 9.5E-15 89.2 -0.3 137 42-179 89-254 (382)
41 KOG1859 Leucine-rich repeat pr 98.8 3.6E-11 7.7E-16 103.6 -9.4 127 70-203 165-293 (1096)
42 KOG4658 Apoptotic ATPase [Sign 98.6 2.3E-08 5E-13 91.0 2.8 100 22-122 546-647 (889)
43 KOG4658 Apoptotic ATPase [Sign 98.5 2.5E-08 5.4E-13 90.8 1.6 174 3-180 551-731 (889)
44 KOG1859 Leucine-rich repeat pr 98.5 8.5E-10 1.8E-14 95.3 -8.1 156 14-179 102-292 (1096)
45 KOG2982 Uncharacterized conser 98.4 4.1E-08 8.9E-13 76.9 0.4 161 19-180 69-263 (418)
46 KOG4579 Leucine-rich repeat (L 98.4 2.9E-08 6.3E-13 69.2 -1.4 131 70-205 28-162 (177)
47 KOG2120 SCF ubiquitin ligase, 98.4 4E-09 8.7E-14 82.5 -6.8 157 21-178 185-350 (419)
48 KOG2120 SCF ubiquitin ligase, 98.4 4.1E-09 8.8E-14 82.4 -7.0 173 1-176 189-373 (419)
49 KOG1644 U2-associated snRNP A' 98.3 8.2E-07 1.8E-11 65.9 5.1 105 70-177 43-151 (233)
50 KOG4579 Leucine-rich repeat (L 98.3 2.9E-08 6.3E-13 69.2 -3.1 80 47-130 55-135 (177)
51 KOG2982 Uncharacterized conser 98.3 1.3E-07 2.9E-12 74.1 0.0 189 11-200 35-260 (418)
52 KOG1644 U2-associated snRNP A' 98.3 1.3E-06 2.9E-11 64.8 5.1 123 2-129 24-151 (233)
53 COG5238 RNA1 Ran GTPase-activa 98.3 7.6E-08 1.6E-12 74.6 -2.0 205 2-207 35-290 (388)
54 PF13306 LRR_5: Leucine rich r 98.2 4.3E-06 9.4E-11 58.7 6.3 124 14-144 5-128 (129)
55 PF12799 LRR_4: Leucine Rich r 98.1 2.8E-06 6.1E-11 47.8 3.2 37 142-179 1-37 (44)
56 PF12799 LRR_4: Leucine Rich r 98.1 5.1E-06 1.1E-10 46.7 3.6 36 22-58 2-37 (44)
57 PF13306 LRR_5: Leucine rich r 98.0 2.1E-05 4.4E-10 55.2 6.6 124 38-168 5-128 (129)
58 PRK15386 type III secretion pr 98.0 8.5E-05 1.8E-09 61.9 9.9 136 18-177 49-188 (426)
59 KOG3665 ZYG-1-like serine/thre 97.9 1.1E-05 2.5E-10 72.0 3.4 133 45-180 122-264 (699)
60 KOG3665 ZYG-1-like serine/thre 97.7 9.9E-06 2.1E-10 72.4 1.2 149 21-172 122-281 (699)
61 COG5238 RNA1 Ran GTPase-activa 97.6 2.1E-05 4.6E-10 61.3 1.1 166 15-182 86-288 (388)
62 PRK15386 type III secretion pr 97.5 0.00099 2.1E-08 55.7 9.5 129 1-153 56-188 (426)
63 KOG2739 Leucine-rich acidic nu 97.5 9.2E-05 2E-09 57.3 3.1 88 41-131 39-129 (260)
64 KOG2123 Uncharacterized conser 97.4 8.5E-06 1.8E-10 63.6 -3.1 100 68-172 18-123 (388)
65 KOG2739 Leucine-rich acidic nu 97.2 9.4E-05 2E-09 57.2 0.7 107 64-173 38-150 (260)
66 KOG2123 Uncharacterized conser 96.7 5.9E-05 1.3E-09 59.1 -4.6 98 20-122 18-122 (388)
67 KOG4308 LRR-containing protein 96.0 2.2E-05 4.8E-10 67.2 -11.3 177 2-179 92-303 (478)
68 PF00560 LRR_1: Leucine Rich R 95.4 0.0091 2E-07 27.9 1.2 21 22-43 1-21 (22)
69 PF13504 LRR_7: Leucine rich r 94.4 0.026 5.6E-07 24.5 1.2 13 167-179 2-14 (17)
70 KOG0473 Leucine-rich repeat pr 93.0 0.0013 2.9E-08 50.4 -7.1 87 17-106 38-124 (326)
71 KOG1947 Leucine rich repeat pr 92.2 0.03 6.5E-07 48.1 -0.8 89 17-105 210-307 (482)
72 KOG4308 LRR-containing protein 91.7 0.0013 2.9E-08 56.5 -9.6 178 23-201 89-302 (478)
73 KOG1947 Leucine rich repeat pr 91.7 0.071 1.5E-06 45.8 0.9 110 44-154 187-307 (482)
74 smart00369 LRR_TYP Leucine-ric 91.3 0.19 4.2E-06 24.2 1.9 14 21-34 2-15 (26)
75 smart00370 LRR Leucine-rich re 91.3 0.19 4.2E-06 24.2 1.9 14 21-34 2-15 (26)
76 KOG3864 Uncharacterized conser 91.1 0.025 5.5E-07 42.5 -2.1 82 95-177 103-187 (221)
77 KOG0473 Leucine-rich repeat pr 90.8 0.0083 1.8E-07 46.2 -4.9 86 66-155 39-124 (326)
78 PF13516 LRR_6: Leucine Rich r 88.4 0.12 2.7E-06 24.4 -0.2 11 47-57 4-14 (24)
79 KOG3864 Uncharacterized conser 88.3 0.099 2.2E-06 39.4 -0.8 77 46-122 102-181 (221)
80 smart00365 LRR_SD22 Leucine-ri 83.5 1.2 2.5E-05 21.7 1.9 14 166-179 2-15 (26)
81 smart00368 LRR_RI Leucine rich 82.4 1.3 2.8E-05 21.8 1.8 14 166-179 2-15 (28)
82 smart00364 LRR_BAC Leucine-ric 79.6 1.5 3.3E-05 21.3 1.5 18 166-184 2-19 (26)
83 KOG4341 F-box protein containi 76.2 1.4 3E-05 37.2 1.2 177 20-197 267-460 (483)
84 KOG4341 F-box protein containi 69.9 2.1 4.5E-05 36.2 0.9 134 19-153 292-437 (483)
85 KOG3763 mRNA export factor TAP 68.6 2.5 5.5E-05 36.9 1.1 64 19-84 216-285 (585)
86 KOG3763 mRNA export factor TAP 65.0 3.3 7.2E-05 36.2 1.1 64 117-182 218-286 (585)
87 smart00367 LRR_CC Leucine-rich 56.9 8.8 0.00019 18.2 1.4 13 165-177 1-13 (26)
88 TIGR00864 PCC polycystin catio 53.2 10 0.00022 39.8 2.4 32 124-155 1-32 (2740)
89 TIGR00864 PCC polycystin catio 45.7 13 0.00028 39.1 1.8 32 3-34 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.1e-25 Score=207.74 Aligned_cols=209 Identities=42% Similarity=0.673 Sum_probs=149.9
Q ss_pred EecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCc
Q 038699 3 GLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLS 82 (237)
Q Consensus 3 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 82 (237)
++++|++++..|..|..++.|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+ ..++|+.|++++|.+.
T Consensus 410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~ 488 (968)
T PLN00113 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFS 488 (968)
T ss_pred ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccC
Confidence 344444444444444444444444444444444444444444555555555555544444433 3456777777777777
Q ss_pred CcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccc
Q 038699 83 GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASL 162 (237)
Q Consensus 83 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 162 (237)
+..|..+..+++|+.|++++|.+.+..|..+..+++|+.| ++++|.+++..|..+..+++|+.|++++|.+++..|..+
T Consensus 489 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L-~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL-DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred CccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE-ECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence 6777777888888888888888888888888888899999 999999888888888889999999999999988888888
Q ss_pred cCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCC--CCCCCC
Q 038699 163 SSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQ--GLRPCN 213 (237)
Q Consensus 163 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~--~~~~C~ 213 (237)
..+++|++|++++|++.+.+|....+..+....+.+|+.+||..+ ....|.
T Consensus 568 ~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~ 620 (968)
T PLN00113 568 GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCK 620 (968)
T ss_pred hcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCc
Confidence 888999999999999998898887888888888889999998653 234564
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.4e-24 Score=200.57 Aligned_cols=197 Identities=43% Similarity=0.625 Sum_probs=124.2
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|+|++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 56666666666666666666777777776666666666666666666666666666666666666666666666666666
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
.+.+|..+..+++|++|++++|.+.+..|..+..+++|+.| ++++|.+.+..|..+..+++|+.|++++|.+.+..|..
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL-FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE-ECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence 66666666666666666666666665666666666666666 66666665555555666666666666666665555555
Q ss_pred ccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccC
Q 038699 162 LSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNN 199 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n 199 (237)
+..+++|++|++++|.+.+.+|.. ..+++++.+++.+|
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 556666666666666665544432 33455555555554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=3.5e-23 Score=172.01 Aligned_cols=204 Identities=26% Similarity=0.277 Sum_probs=129.2
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|||+.|.|+.+.-+.|..-.++++|+|+.|+|+....+.|..+.+|-.|.|++|.++...+..|..++.|+.|++..|.|
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 56666666655556666666666666666666666666666666666666666666655555555566666666665554
Q ss_pred c------------------------CcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChh
Q 038699 82 S------------------------GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQ 137 (237)
Q Consensus 82 ~------------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~ 137 (237)
. ..-...|..+.++++|++..|++...-..++.++..|+.| +++.|.|.++.++.
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L-~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL-DLSYNAIQRIHIDS 312 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh-ccchhhhheeecch
Confidence 3 2222344555666677777777765556677777777777 77888777777777
Q ss_pred hcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCcccccCC
Q 038699 138 LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKVQ 207 (237)
Q Consensus 138 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~~ 207 (237)
+..+++|+.|+|++|.|+...+..|..+..|++|.|++|.+...-... ..+.++..+++..| .+.+.+.
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IE 382 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIE 382 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEe
Confidence 777777888888888777666666666666666666666665222111 23455556666555 3444443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.1e-22 Score=167.48 Aligned_cols=197 Identities=25% Similarity=0.270 Sum_probs=163.3
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|+|.+|.|+.+-.+.++.++.|+.|+|+.|.|....-..|..-.++++|+|++|.|+..-.+.|..+.+|..|.++.|.+
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence 89999999999999999999999999999999966667788878999999999999988889999999999999999999
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
+...+..|..+++|+.|++.+|.+.-..--.|.++++|+.| .+..|.+.....++|..+.++++|+|+.|+++..-..+
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl-klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL-KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh-hhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence 96666789899999999999999874435578888888888 88888887777777777888888888888777666677
Q ss_pred ccCCCCCCEEEcCCCcCcCCCCC-CCccCCCccchhccC
Q 038699 162 LSSMLSLVAVNLSYNNLEGPLPD-GSVFSSSQSSAFTNN 199 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~~~l~~n 199 (237)
+.+++.|+.|++++|.|...-+. +..-+.++++++.+|
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 77777777777777777643333 334455777777666
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.81 E-value=3.7e-22 Score=142.75 Aligned_cols=181 Identities=30% Similarity=0.471 Sum_probs=160.8
Q ss_pred cCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCC
Q 038699 17 IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLR 96 (237)
Q Consensus 17 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 96 (237)
+..+.+++.|.|++|+++ .+|..++.+.+|+.|++.+|+++ .+|..+..+++|+.|++..|.+. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 456788999999999999 77778999999999999999999 88999999999999999999998 8899999999999
Q ss_pred EEEccCCcccc-cCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCC
Q 038699 97 ILNLSQNNLIG-TIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSY 175 (237)
Q Consensus 97 ~L~l~~n~~~~-~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 175 (237)
.|++.+|.+.. .+|..|..+..|+.| ++++|.+. ..|...+.+++|+.|.+..|.+- .+|..++.+..|++|++++
T Consensus 106 vldltynnl~e~~lpgnff~m~tlral-yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRAL-YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHH-HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 99999999863 578889999999999 99999998 88888999999999999999988 7899999999999999999
Q ss_pred CcCcCCCCCCCcc---CCCccchhccCCccc
Q 038699 176 NNLEGPLPDGSVF---SSSQSSAFTNNKDLC 203 (237)
Q Consensus 176 n~l~~~~~~~~~~---~~l~~~~l~~n~~l~ 203 (237)
|+++-.+|+...+ .+-..+.+..|||..
T Consensus 183 nrl~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 183 NRLTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred ceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 9999777776433 334456677787765
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=1.4e-21 Score=164.15 Aligned_cols=211 Identities=30% Similarity=0.399 Sum_probs=121.3
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|||++|+++ ..|..+..-+++-.|+|++|+|..+....|.++..|-.|+|++|++. .+|..+..+..|++|.+++|.+
T Consensus 108 lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 108 LDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred eecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence 555555554 44444555555555555555555333333344555555555555554 4444444444444444444443
Q ss_pred c-------------------------CcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccCh
Q 038699 82 S-------------------------GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136 (237)
Q Consensus 82 ~-------------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~ 136 (237)
. ..+|..+..+.+|..++++.|.+. .+|+++..+.+|+.| ++++|+++ ....
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL-NLS~N~it-eL~~ 262 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL-NLSGNKIT-ELNM 262 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee-ccCcCcee-eeec
Confidence 2 234555666667777777777776 667777777777777 77777776 3333
Q ss_pred hhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCc--CCCCCCCccCCCccchhccCCcccccCCCCCCCCC
Q 038699 137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE--GPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNA 214 (237)
Q Consensus 137 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~~ 214 (237)
......+|++|+++.|+++ .+|+++..++.|+.|.+.+|+++ |.+.....+..+..+...+| .+-=.|.++..|..
T Consensus 263 ~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~k 340 (1255)
T KOG0444|consen 263 TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVK 340 (1255)
T ss_pred cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHH
Confidence 3445567777777777777 67777777777777777777765 33333355666666666555 23323334445554
Q ss_pred CccCC
Q 038699 215 LSTDK 219 (237)
Q Consensus 215 ~~~~~ 219 (237)
+....
T Consensus 341 L~kL~ 345 (1255)
T KOG0444|consen 341 LQKLK 345 (1255)
T ss_pred HHHhc
Confidence 43333
No 7
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=5e-21 Score=152.54 Aligned_cols=202 Identities=27% Similarity=0.325 Sum_probs=157.0
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccC-CcccccCcccccC-------------
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNG-NNISGQIPEEIGG------------- 67 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~------------- 67 (237)
++|..|+|+.+++.+|..+++|+.|+|+.|.|+.+.|++|.+++.+..|.+.+ |+|++...+.|++
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 67889999999999999999999999999999988999999999988887766 8888544444444
Q ss_pred -----------CCCCCEEEccCCcCcCcccc-cccCCCCCCEEEccCCccc-----------------------------
Q 038699 68 -----------LLNLDSLDLSMNRLSGPIPN-QIGELRDLRILNLSQNNLI----------------------------- 106 (237)
Q Consensus 68 -----------l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~~~----------------------------- 106 (237)
+++|..|.+.+|.+. .+++ .+..+..++++++..|.+.
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~r 230 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYR 230 (498)
T ss_pred hcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHH
Confidence 445555555555554 2232 4555566666665555310
Q ss_pred --------------------------------ccCC-ccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCc
Q 038699 107 --------------------------------GTIP-FQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNN 153 (237)
Q Consensus 107 --------------------------------~~~~-~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 153 (237)
...| ..|..+++|+.+ ++++|+++++.+.+|.+..++++|.|..|+
T Consensus 231 l~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l-nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 231 LYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL-NLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe-ccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 0011 246677899999 999999999999999999999999999999
Q ss_pred CcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCccccc
Q 038699 154 LSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 154 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~ 205 (237)
+.......|.++..|+.|+|.+|+|+..-|.. .....+.++.+.+||+.|..
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 98666778999999999999999999766654 34566888999999999943
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=4.4e-20 Score=155.25 Aligned_cols=193 Identities=35% Similarity=0.386 Sum_probs=154.0
Q ss_pred EEecCCcCC-CCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 2 LGLAGNSIG-GKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 2 L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+++++|++. .-+|+.+..+..|+.|+|++|++. ..|..+....++-.|+|++|+|..+....|.++.-|-.||+++|.
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 356777776 446677788999999999999999 889889999999999999999995555567789999999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCccc-------------------------ccCCccccCccCccccccCcCcccccccC
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLI-------------------------GTIPFQIGNLVGLQDLQDLSYNSLTGEIP 135 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~-------------------------~~~~~~~~~l~~L~~L~~l~~n~~~~~~~ 135 (237)
+. .+|..+..+..|++|.+++|.+. ..+|..+..+.+|..+ +++.|.+. ..|
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv-DlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV-DLSENNLP-IVP 238 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhc-cccccCCC-cch
Confidence 98 66666788888888888888542 1345666667777777 88888887 778
Q ss_pred hhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699 136 AQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 136 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n 199 (237)
..+..+++|+.|+|++|.|+ .+.-....+.+|++|+++.|+++..+.....++.+..+...+|
T Consensus 239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccC
Confidence 88888888888888888888 5555666778888888888888855556677788887776665
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=2.2e-20 Score=149.33 Aligned_cols=215 Identities=27% Similarity=0.382 Sum_probs=150.0
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|+.++|++. ..++.++.+-.+..++..+|++. ..|.++..+..+..+++.+|.++...|+ .-.++.|++||...|.+
T Consensus 119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLL 195 (565)
T ss_pred hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhh
Confidence 344555554 44444555555555555555555 4455555555666666666666633333 33467777777777777
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
+ .+|+.++.+.+|..|++.+|.+. .+| .|+++..|.++ .++.|.+........+.++++..||+.+|+++ ..|+.
T Consensus 196 ~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~El-h~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 196 E-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKEL-HVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred h-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHH-HhcccHHHhhHHHHhcccccceeeeccccccc-cCchH
Confidence 6 66777778888888888888876 556 67788888888 88888887444555668999999999999999 88999
Q ss_pred ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCccc--------ccC------CCCCCCCCCccCCCCCccc
Q 038699 162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLC--------GKV------QGLRPCNALSTDKGGGHKD 225 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~--------~~~------~~~~~C~~~~~~~~~~~~~ 225 (237)
+..+.+|..||+++|.+++..+....+ .++.+.+.|||--. |+. .+-..|...+..+++....
T Consensus 271 ~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred HHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 999999999999999999888888777 88999999997433 211 1223466666666665443
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=4.4e-20 Score=132.18 Aligned_cols=175 Identities=31% Similarity=0.541 Sum_probs=151.3
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|.|++|.++ ..|+.++.+.+|+.|++.+|+++ ..|..++.+++|+.|++..|++. ..|..|+.+|.|+.||+.+|++
T Consensus 38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred hhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccccc
Confidence 678999998 66778899999999999999999 78889999999999999999998 8999999999999999999988
Q ss_pred c-CcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699 82 S-GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA 160 (237)
Q Consensus 82 ~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 160 (237)
. ..+|..|..+..|+.|.++.|.+. .+|..++.+++|+.| .+++|.+- ..|..++.+..|++|++.+|.++ .+|.
T Consensus 115 ~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil-~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlpp 190 (264)
T KOG0617|consen 115 NENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQIL-SLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPP 190 (264)
T ss_pred ccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEE-eeccCchh-hCcHHHHHHHHHHHHhcccceee-ecCh
Confidence 5 467888889999999999999997 888899999999999 99999987 78888999999999999999999 6776
Q ss_pred cccCC---CCCCEEEcCCCcCcCCCC
Q 038699 161 SLSSM---LSLVAVNLSYNNLEGPLP 183 (237)
Q Consensus 161 ~~~~~---~~L~~L~l~~n~l~~~~~ 183 (237)
.++.+ .+-+.+.+++|+....+.
T Consensus 191 el~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 191 ELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred hhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 66553 233345566666554443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=1.8e-19 Score=144.20 Aligned_cols=198 Identities=31% Similarity=0.487 Sum_probs=161.4
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
++.++|.+. .+|+.+..+.+++.++.+.|++. ..++.+..+..++.++..+|+++ ..|.++..+.+|..+++.+|.+
T Consensus 96 l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l 172 (565)
T KOG0472|consen 96 LNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKL 172 (565)
T ss_pred hhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccch
Confidence 345566665 56666777778888888888887 56666777778888888888887 6777777888888888888888
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
. ..|...-+++.|++++...|.+. .+|..++.+.+|.-| ++..|++. ..| .|.++..|+++++..|+|. ..|..
T Consensus 173 ~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~L-yL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae 246 (565)
T KOG0472|consen 173 K-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELL-YLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAE 246 (565)
T ss_pred h-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHH-Hhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHH
Confidence 8 44444445999999999999887 788899999999999 99999998 777 6899999999999999998 55654
Q ss_pred c-cCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCC
Q 038699 162 L-SSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGL 209 (237)
Q Consensus 162 ~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~ 209 (237)
. ..++++..||+..|+++..+++.+.+.++..+++++| .+.+.++.+
T Consensus 247 ~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~sL 294 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYSL 294 (565)
T ss_pred HhcccccceeeeccccccccCchHHHHhhhhhhhcccCC-ccccCCccc
Confidence 4 4899999999999999977777788888999999887 677777654
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=9.8e-18 Score=146.07 Aligned_cols=208 Identities=26% Similarity=0.371 Sum_probs=153.1
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCC----------------------ccCccccCCCCCCEEeccCCccc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSG----------------------EIPAHIGNLTELSTLSLNGNNIS 58 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~----------------------~~~~~~~~l~~L~~L~l~~n~l~ 58 (237)
++|+++|+++... +++..+.+|+.+...+|.++. .+|....++..|++|+|..|.+.
T Consensus 245 ~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 245 YLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred eeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc
Confidence 3678888887444 888888888888888877652 23333344567777777777666
Q ss_pred ccCcccc--------------------------cCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCcc
Q 038699 59 GQIPEEI--------------------------GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQ 112 (237)
Q Consensus 59 ~~~~~~~--------------------------~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 112 (237)
.+|+.+ ..++.|+.|++.+|.+++..-..+.++.+|+.|++++|++.......
T Consensus 324 -~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~ 402 (1081)
T KOG0618|consen 324 -SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK 402 (1081)
T ss_pred -ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHH
Confidence 333211 12335666777777777665566778899999999999998666667
Q ss_pred ccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCcc-CCC
Q 038699 113 IGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVF-SSS 191 (237)
Q Consensus 113 ~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~l 191 (237)
+.++..|++| ++++|+++ ..|.....++.|++|..-+|++. .+| .+..++.|+.+|++.|.++...-..... +++
T Consensus 403 ~~kle~LeeL-~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L 478 (1081)
T KOG0618|consen 403 LRKLEELEEL-NLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL 478 (1081)
T ss_pred HhchHHhHHH-hcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCccc
Confidence 8899999999 99999998 66788889999999999999998 777 7889999999999999998544333333 889
Q ss_pred ccchhccCCcccccCCCCCCCCC
Q 038699 192 QSSAFTNNKDLCGKVQGLRPCNA 214 (237)
Q Consensus 192 ~~~~l~~n~~l~~~~~~~~~C~~ 214 (237)
+.++++||.++--.-..++.|+.
T Consensus 479 kyLdlSGN~~l~~d~~~l~~l~~ 501 (1081)
T KOG0618|consen 479 KYLDLSGNTRLVFDHKTLKVLKS 501 (1081)
T ss_pred ceeeccCCcccccchhhhHHhhh
Confidence 99999999875533333333433
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.61 E-value=1.8e-14 Score=134.97 Aligned_cols=193 Identities=26% Similarity=0.299 Sum_probs=101.5
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|+|+++.+. .++..+..+++|+.|+|+++...+.+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|..
T Consensus 616 L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 616 LQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred EECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence 444445444 2334444555555555555433323332 44555555555555543335555555555666666655443
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChh------------------------
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQ------------------------ 137 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~------------------------ 137 (237)
...+|..+ ++++|+.|++++|......|.. ..+|+.| ++++|.+. ..|..
T Consensus 694 L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L-~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 694 LEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWL-DLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred cCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCee-ecCCCccc-cccccccccccccccccccchhhcccccc
Confidence 33444333 4555666666655433222221 2334444 55555443 12211
Q ss_pred ------hcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcc
Q 038699 138 ------LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDL 202 (237)
Q Consensus 138 ------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l 202 (237)
+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|....++.+..+++.+|..+
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL 838 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcc
Confidence 11134667777777765556777777788888888887755445666555666666666665443
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.60 E-value=1.9e-14 Score=134.91 Aligned_cols=78 Identities=27% Similarity=0.325 Sum_probs=52.2
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|+|+++...+.+| .+..+++|+.|++.+|.....+|..+..+++|+.|++++|...+.+|..+ .+++|+.|++++|..
T Consensus 639 L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 639 IDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred EECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence 6777765444555 36777888888888876665777777788888888888764333555544 566666666666543
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=3e-17 Score=131.18 Aligned_cols=178 Identities=28% Similarity=0.349 Sum_probs=142.5
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccC-CcCCCccCccccCC------------------------CCCCEEeccCC
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSS-NQLSGEIPAHIGNL------------------------TELSTLSLNGN 55 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l------------------------~~L~~L~l~~n 55 (237)
.|||+.|+|+.+.|.+|.++..+..|.+.+ |+|++...+.|.++ +++..|.+..|
T Consensus 95 rLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 95 RLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred eecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch
Confidence 379999999999999999999988887776 88886555555554 45555555555
Q ss_pred cccccCcccccCCCCCCEEEccCCcCcC----------------------------------------------------
Q 038699 56 NISGQIPEEIGGLLNLDSLDLSMNRLSG---------------------------------------------------- 83 (237)
Q Consensus 56 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~---------------------------------------------------- 83 (237)
.+....-..|..+.+++.+++..|.+..
T Consensus 175 ~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~ 254 (498)
T KOG4237|consen 175 KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSR 254 (498)
T ss_pred hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHh
Confidence 5552222366777777777777665110
Q ss_pred ---------ccc-ccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCc
Q 038699 84 ---------PIP-NQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNN 153 (237)
Q Consensus 84 ---------~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 153 (237)
..| ..|..+++|+.|++++|.++...+.+|.....+++| .+..|++..+....|.++..|+.|+|.+|+
T Consensus 255 ~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL-~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 255 LSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL-YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred hccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh-hcCcchHHHHHHHhhhccccceeeeecCCe
Confidence 011 235678999999999999999889999999999999 999999998888899999999999999999
Q ss_pred CcCccCccccCCCCCCEEEcCCCcCc
Q 038699 154 LSGEIPASLSSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 154 l~~~~~~~~~~~~~L~~L~l~~n~l~ 179 (237)
|+-..|.+|..+.+|.+|++-.|++.
T Consensus 334 it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 334 ITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred eEEEecccccccceeeeeehccCccc
Confidence 99888999999999999999999885
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=1.2e-14 Score=129.27 Aligned_cols=175 Identities=30% Similarity=0.510 Sum_probs=91.1
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|+|++|.++. +|..+. .+|+.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|.+
T Consensus 204 L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L 274 (754)
T PRK15370 204 LILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKI 274 (754)
T ss_pred EEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCcc
Confidence 5666666663 333332 36777777777666 3444332 35677777777766 4555443 3677777777777
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCccccc--------------------ccChhhcCC
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTG--------------------EIPAQLGKL 141 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~--------------------~~~~~~~~~ 141 (237)
. .+|..+. ++|+.|++++|.++. +|..+. ++|+.| ++++|.++. ..|..+ .
T Consensus 275 ~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L-~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~ 345 (754)
T PRK15370 275 S-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHL-NVQSNSLTALPETLPPGLKTLEAGENALTSLPASL--P 345 (754)
T ss_pred C-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHH-HhcCCccccCCccccccceeccccCCccccCChhh--c
Confidence 6 4554332 467777777777763 332221 234444 444444442 122222 1
Q ss_pred CCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699 142 TRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 142 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n 199 (237)
++|+.|++++|.++ .+|..+ .++|++|++++|+++. +|.. ....++.+++.+|
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~-l~~sL~~LdLs~N 398 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPEN-LPAALQIMQASRN 398 (754)
T ss_pred CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHh-HHHHHHHHhhccC
Confidence 35555555555554 333332 2455556666655553 2221 1223455555554
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.57 E-value=1.4e-16 Score=129.88 Aligned_cols=16 Identities=50% Similarity=0.717 Sum_probs=7.4
Q ss_pred CCCCCCeEeCcCCcCc
Q 038699 140 KLTRLQSLNLSHNNLS 155 (237)
Q Consensus 140 ~~~~L~~L~l~~n~l~ 155 (237)
.+++|+.|++++|.++
T Consensus 219 ~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 219 SLKSLEVLNLGDNNLT 234 (319)
T ss_pred ccCCCCEEecCCCcCc
Confidence 3444444444444444
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.57 E-value=2.3e-16 Score=128.53 Aligned_cols=198 Identities=24% Similarity=0.333 Sum_probs=137.2
Q ss_pred EEecCCcCCCCCCcccCCCCC---CcEEEccCCcCCC----ccCccccCC-CCCCEEeccCCcccc----cCcccccCCC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQ---LVELHLSSNQLSG----EIPAHIGNL-TELSTLSLNGNNISG----QIPEEIGGLL 69 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~---L~~L~L~~n~i~~----~~~~~~~~l-~~L~~L~l~~n~l~~----~~~~~~~~l~ 69 (237)
|++++|.+....+..+..+.+ |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++ .++..+..++
T Consensus 86 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 165 (319)
T cd00116 86 LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165 (319)
T ss_pred EEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence 678888887666655554444 8888888888773 223344556 788999999888773 2334556677
Q ss_pred CCCEEEccCCcCcCc----ccccccCCCCCCEEEccCCccccc----CCccccCccCccccccCcCcccccccChhhc--
Q 038699 70 NLDSLDLSMNRLSGP----IPNQIGELRDLRILNLSQNNLIGT----IPFQIGNLVGLQDLQDLSYNSLTGEIPAQLG-- 139 (237)
Q Consensus 70 ~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~-- 139 (237)
+|++|++++|.+.+. ++..+..+++|++|++++|.+.+. ....+..+++|+.| ++++|.+.+.....+.
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L-~ls~n~l~~~~~~~l~~~ 244 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL-NLGDNNLTDAGAAALASA 244 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE-ecCCCcCchHHHHHHHHH
Confidence 899999999888732 233455667999999999988633 33456678899999 9999988753332222
Q ss_pred ---CCCCCCeEeCcCCcCcC----ccCccccCCCCCCEEEcCCCcCcCC----CCC-CCcc-CCCccchhccCC
Q 038699 140 ---KLTRLQSLNLSHNNLSG----EIPASLSSMLSLVAVNLSYNNLEGP----LPD-GSVF-SSSQSSAFTNNK 200 (237)
Q Consensus 140 ---~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~-~~~~-~~l~~~~l~~n~ 200 (237)
..+.|++|++++|.+++ .+...+..+++|+++++++|.+... +.. ...+ +.+..+++..|+
T Consensus 245 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 24799999999999973 2344566678999999999999843 111 1222 456666666654
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=9.2e-15 Score=129.93 Aligned_cols=183 Identities=28% Similarity=0.398 Sum_probs=120.4
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|++++|.++. +|..+. ..|+.|++++|.+. .+|..+. .+|+.|++++|.++ .+|+.+. ++|+.|++++|.+
T Consensus 225 L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 225 LYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSI 295 (754)
T ss_pred EECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcc
Confidence 6777777773 344332 35777777777766 4454432 35677777777666 4454432 3566666666666
Q ss_pred cCcccccc-------------------cCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCC
Q 038699 82 SGPIPNQI-------------------GELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLT 142 (237)
Q Consensus 82 ~~~~~~~~-------------------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~ 142 (237)
+. +|..+ .-.++|+.|++++|.++. +|..+. ++|+.| ++++|++. ..|..+ .+
T Consensus 296 t~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L-~Ls~N~L~-~LP~~l--p~ 367 (754)
T PRK15370 296 RT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVL-DVSKNQIT-VLPETL--PP 367 (754)
T ss_pred cc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEE-ECCCCCCC-cCChhh--cC
Confidence 52 22211 112568888888888773 555443 689999 99999998 566554 36
Q ss_pred CCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-----CccCCCccchhccCCccccc
Q 038699 143 RLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-----SVFSSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 143 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----~~~~~l~~~~l~~n~~l~~~ 205 (237)
+|+.|++++|.++ .+|..+. ..|+.|++++|++++ +|.. ...+.+..+.+.+|+.-.+.
T Consensus 368 ~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls~~t 431 (754)
T PRK15370 368 TITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFSERT 431 (754)
T ss_pred CcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCccHHH
Confidence 8999999999998 5565543 479999999999984 4432 22356778888898754443
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=1e-13 Score=122.93 Aligned_cols=161 Identities=27% Similarity=0.358 Sum_probs=84.0
Q ss_pred CCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccC----------------C-CCCCEEEccCCcCcCc
Q 038699 22 QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGG----------------L-LNLDSLDLSMNRLSGP 84 (237)
Q Consensus 22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------l-~~L~~L~l~~n~i~~~ 84 (237)
.|+.|++++|+++ .+|. ..++|+.|++++|.+++ +|..... + .+|+.|++++|.+. .
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~ 356 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-S 356 (788)
T ss_pred hcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-C
Confidence 4555566666655 3332 23567777777777763 3321110 0 24555555555554 2
Q ss_pred ccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccC
Q 038699 85 IPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSS 164 (237)
Q Consensus 85 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 164 (237)
+|.. ..+|+.|++++|.+. .+|.. ..+|+.| ++++|.++ ..|.. .++|+.|++++|.++ .+|..
T Consensus 357 LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~L-dLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l--- 420 (788)
T PRK15387 357 LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKEL-IVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML--- 420 (788)
T ss_pred CCCC---Ccccceehhhccccc-cCccc---ccccceE-EecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---
Confidence 2321 223444455555444 22321 2345666 66666665 23321 245677777777766 34432
Q ss_pred CCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCccccc
Q 038699 165 MLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 165 ~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~ 205 (237)
..+|+.|++++|+++..+.....++.+..+++.+|+ ++|.
T Consensus 421 ~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~-Ls~~ 460 (788)
T PRK15387 421 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP-LSER 460 (788)
T ss_pred hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC-CCch
Confidence 235667777777777333334456677778877775 4444
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=5.1e-13 Score=118.62 Aligned_cols=171 Identities=26% Similarity=0.339 Sum_probs=95.8
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++++++++ .+|..+. ++|+.|++.+|.++ .+|. .+++|++|++++|.++ .+|.. .++|+.|++++|.
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCc
Confidence 3788999998 4565554 47888899888888 4553 3578888888888887 44532 2456666666665
Q ss_pred CcCccccccc-----------------CCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCC
Q 038699 81 LSGPIPNQIG-----------------ELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTR 143 (237)
Q Consensus 81 i~~~~~~~~~-----------------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~ 143 (237)
+. .+|..+. .+++|+.|++++|.+.+ +|.. ..+|+.| ++++|.++ .+|. ...+
T Consensus 274 L~-~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L-~Ls~N~L~-~LP~---lp~~ 343 (788)
T PRK15387 274 LT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPAL---PSELCKL-WAYNNQLT-SLPT---LPSG 343 (788)
T ss_pred hh-hhhhchhhcCEEECcCCccccccccccccceeECCCCcccc-CCCC---ccccccc-ccccCccc-cccc---cccc
Confidence 55 2222110 12445555555555542 2221 1234445 55555554 2222 1246
Q ss_pred CCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699 144 LQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 144 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n 199 (237)
|+.|++++|.++ .+|.. ..+|+.|++++|+++. +|.. ...+..+++.+|
T Consensus 344 Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l--~~~L~~LdLs~N 392 (788)
T PRK15387 344 LQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL--PSGLKELIVSGN 392 (788)
T ss_pred cceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc--ccccceEEecCC
Confidence 777777777776 34432 2345555666666552 3332 234455555544
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.44 E-value=1.6e-15 Score=126.40 Aligned_cols=173 Identities=32% Similarity=0.523 Sum_probs=140.2
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
.||+.|++. .+|..+..+-.|..+.|+.|.+. .+|.+++.+..|.+++|+.|+++ .+|..+..++ |+.|-+++|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 577888887 66767777777888888888888 67778888888999999999888 7777776654 78888888888
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
+ .+|..++.+..|.+|+.+.|.+. ..|..++.+.+|+.| .++.|.+. ..|..+.. -.|..||++.|++. .+|-.
T Consensus 156 ~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l-~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 156 T-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDL-NVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred c-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHH-HHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecchh
Confidence 8 77888888888999999999887 677788888888888 88888887 56666663 35888999999998 78888
Q ss_pred ccCCCCCCEEEcCCCcCcCCCCC
Q 038699 162 LSSMLSLVAVNLSYNNLEGPLPD 184 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~~~~~~ 184 (237)
|..++.|++|.|++|+++.+...
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHH
Confidence 99999999999999999844433
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.43 E-value=6.6e-15 Score=128.74 Aligned_cols=169 Identities=33% Similarity=0.392 Sum_probs=130.1
Q ss_pred EecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCcccc--------------------------CCCCCCEEeccCCc
Q 038699 3 GLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIG--------------------------NLTELSTLSLNGNN 56 (237)
Q Consensus 3 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--------------------------~l~~L~~L~l~~n~ 56 (237)
+..+|.+. .+|+....++.|+.|+|..|.+.. .|+.+. .++.|+.|++.+|.
T Consensus 293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH 370 (1081)
T ss_pred Hhhhhhhh-hCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc
Confidence 44556665 455556667788888888777763 222211 13467788888888
Q ss_pred ccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccCh
Q 038699 57 ISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136 (237)
Q Consensus 57 l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~ 136 (237)
+++.....+.++..|+.|+|++|.+.......+.++..|++|++++|.++ .+|..+..+..|+.| ....|.+. ..|
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL-~ahsN~l~-~fP- 446 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL-RAHSNQLL-SFP- 446 (1081)
T ss_pred ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH-hhcCCcee-ech-
Confidence 88877788889999999999999998444467788999999999999998 777889999999999 88889887 667
Q ss_pred hhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCc
Q 038699 137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177 (237)
Q Consensus 137 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 177 (237)
.+..++.|+.+|++.|.++......-...++|++||++||.
T Consensus 447 e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 67889999999999999885333333334899999999997
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.42 E-value=4.8e-13 Score=117.94 Aligned_cols=118 Identities=42% Similarity=0.638 Sum_probs=105.0
Q ss_pred CCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcC
Q 038699 95 LRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLS 174 (237)
Q Consensus 95 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 174 (237)
++.|+|++|.+.+..|..+..+++|+.| ++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L-~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSI-NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEE-ECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 6789999999999999999999999999 999999998999999999999999999999999999999999999999999
Q ss_pred CCcCcCCCCCCCc--cCCCccchhccCCcccccCCCCCCCCC
Q 038699 175 YNNLEGPLPDGSV--FSSSQSSAFTNNKDLCGKVQGLRPCNA 214 (237)
Q Consensus 175 ~n~l~~~~~~~~~--~~~l~~~~l~~n~~l~~~~~~~~~C~~ 214 (237)
+|++++.+|.... +..+..+++.+|+.+||.+ .+..|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p-~l~~C~~ 539 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP-GLRACGP 539 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC-CCCCCcc
Confidence 9999999987532 2345678899999999864 4577853
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.40 E-value=8e-15 Score=122.33 Aligned_cols=191 Identities=35% Similarity=0.458 Sum_probs=160.5
Q ss_pred EEecCCcCCCCCCccc-CCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 2 LGLAGNSIGGKIPAEI-GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
|.|++-++..-.-.++ ..+......+++.|++. .+|..++.+..|+.+.+..|.+. .+|..+..+..|.+|+++.|.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence 3445555543333333 34566677899999999 78888898999999999999998 889999999999999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA 160 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 160 (237)
+. .+|..+..++ |+.|-+++|+++ .+|..++....|..| +.+.|.+. ..|..+.++.+|+.|.+..|.+. .+|.
T Consensus 133 lS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~l-d~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 133 LS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHL-DVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred hh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHh-hhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 99 7787777666 999999999998 778888989999999 99999998 88888999999999999999998 6777
Q ss_pred cccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCc
Q 038699 161 SLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKD 201 (237)
Q Consensus 161 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~ 201 (237)
.+. .-.|..||+++|+++..+-....+..++++.+.+||-
T Consensus 207 El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 207 ELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred HHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 776 4578999999999995555667889999999999974
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.37 E-value=6.1e-13 Score=111.71 Aligned_cols=171 Identities=38% Similarity=0.584 Sum_probs=88.8
Q ss_pred EEecCCcCCCCCCcccCCCC-CCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 2 LGLAGNSIGGKIPAEIGSLS-QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
|++.+|.++.+.+ ...... +|+.|++++|.+. .++..+..+++|+.|++++|.+. .++.....+++|+.|++++|.
T Consensus 121 L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~ 197 (394)
T COG4886 121 LDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197 (394)
T ss_pred EecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCc
Confidence 4455555553322 223332 5555666666555 33334455556666666666555 334333355556666666665
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA 160 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 160 (237)
+. .+|........|+++.+++|.+. ..+..+..+.++..+ .+..|++. ..+..+..++.++.|++++|.+++...
T Consensus 198 i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l-~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~- 272 (394)
T COG4886 198 IS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGL-ELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS- 272 (394)
T ss_pred cc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccccccc-ccCCceee-eccchhccccccceecccccccccccc-
Confidence 55 33433334444556666655432 333445555555555 55555554 224445555666666666666653222
Q ss_pred cccCCCCCCEEEcCCCcCcCC
Q 038699 161 SLSSMLSLVAVNLSYNNLEGP 181 (237)
Q Consensus 161 ~~~~~~~L~~L~l~~n~l~~~ 181 (237)
+....+++.|++++|.+...
T Consensus 273 -~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 273 -LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred -ccccCccCEEeccCcccccc
Confidence 55566666666666665533
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.34 E-value=1.5e-12 Score=109.42 Aligned_cols=191 Identities=34% Similarity=0.538 Sum_probs=147.9
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCC-CCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLT-ELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+++..+.+..... ....++.++.|++.+|.++ .++.....+. +|+.|+++.|.+. .++..+..+++|+.|+++.|.
T Consensus 98 l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 4455555532222 2344578999999999999 4555555663 8999999999998 666678899999999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA 160 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 160 (237)
+. .++......+.|+.|++++|.+. .+|........|+++ .++.|.+. ..+..+..+.++..+.+.+|++. ..+.
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l-~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEEL-DLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhh-hhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 98 55555558899999999999998 555555566678888 99999654 55666778889999999999987 4477
Q ss_pred cccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCc
Q 038699 161 SLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKD 201 (237)
Q Consensus 161 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~ 201 (237)
.+..++++++|++++|+++ .++......++..+++.+|..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 250 SIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred hhccccccceecccccccc-ccccccccCccCEEeccCccc
Confidence 7888999999999999999 444467778888888888743
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.32 E-value=1.7e-12 Score=95.69 Aligned_cols=108 Identities=34% Similarity=0.439 Sum_probs=27.7
Q ss_pred cCCCCCCcEEEccCCcCCCccCcccc-CCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccc-cCCCC
Q 038699 17 IGSLSQLVELHLSSNQLSGEIPAHIG-NLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQI-GELRD 94 (237)
Q Consensus 17 ~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~l~~ 94 (237)
+.+..++++|+|.+|.|+.. . .+. .+.+|+.|++++|.++.. +.+..++.|++|++++|.|+. +...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccccc-c-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 33445667777777777732 2 233 456777777777777632 345666777777777777763 33233 34667
Q ss_pred CCEEEccCCcccccC-CccccCccCccccccCcCccc
Q 038699 95 LRILNLSQNNLIGTI-PFQIGNLVGLQDLQDLSYNSL 130 (237)
Q Consensus 95 L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~~l~~n~~ 130 (237)
|++|++++|.+.... -..+..+++|+.| ++.+|.+
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L-~L~~NPv 125 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVL-SLEGNPV 125 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EE-E-TT-GG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCccee-eccCCcc
Confidence 777777777665221 1233334444444 4444444
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.32 E-value=7.5e-13 Score=97.61 Aligned_cols=125 Identities=32% Similarity=0.406 Sum_probs=41.3
Q ss_pred cCCCCCCEEeccCCcccccCccccc-CCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccc-cCccCc
Q 038699 42 GNLTELSTLSLNGNNISGQIPEEIG-GLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGL 119 (237)
Q Consensus 42 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L 119 (237)
.+...+++|+|++|.|+. + +.++ .+.+|+.|++++|.|... +.+..++.|++|++++|.++.. ...+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence 344567788888887773 3 2344 467788888888887733 3466777788888888877743 2223 356777
Q ss_pred cccccCcCccccccc-ChhhcCCCCCCeEeCcCCcCcCcc---CccccCCCCCCEEE
Q 038699 120 QDLQDLSYNSLTGEI-PAQLGKLTRLQSLNLSHNNLSGEI---PASLSSMLSLVAVN 172 (237)
Q Consensus 120 ~~L~~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~ 172 (237)
+.| ++++|++.... -..+..+++|+.|++.+|++++.. ...+..+|+|+.||
T Consensus 91 ~~L-~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 91 QEL-YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -EE-E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CEE-ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 777 77777775422 244556677777777777776321 12344567777666
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.23 E-value=2.8e-11 Score=106.88 Aligned_cols=108 Identities=37% Similarity=0.653 Sum_probs=93.2
Q ss_pred CCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEcc
Q 038699 22 QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLS 101 (237)
Q Consensus 22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 101 (237)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47789999999998889889999999999999999988889889999999999999999998889889999999999999
Q ss_pred CCcccccCCccccCc-cCccccccCcCccc
Q 038699 102 QNNLIGTIPFQIGNL-VGLQDLQDLSYNSL 130 (237)
Q Consensus 102 ~n~~~~~~~~~~~~l-~~L~~L~~l~~n~~ 130 (237)
+|.+.+..|..+... .++..+ ++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l-~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASF-NFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceE-EecCCcc
Confidence 999988888877653 355666 7777754
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=4.6e-12 Score=98.86 Aligned_cols=124 Identities=31% Similarity=0.343 Sum_probs=65.3
Q ss_pred CCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeC
Q 038699 70 NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNL 149 (237)
Q Consensus 70 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l 149 (237)
.|+++|+++|.|. .+.+...-.|.++.|++++|.+... ..+..+++|..| ++++|.+. ....+-..+.+.+.|.+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~L-DLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLL-DLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEe-ecccchhH-hhhhhHhhhcCEeeeeh
Confidence 4556666666665 4444555556666666666665422 235556666666 66666655 33333334555666666
Q ss_pred cCCcCcCccCccccCCCCCCEEEcCCCcCcC--CCCCCCccCCCccchhccCC
Q 038699 150 SHNNLSGEIPASLSSMLSLVAVNLSYNNLEG--PLPDGSVFSSSQSSAFTNNK 200 (237)
Q Consensus 150 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~l~~~~l~~n~ 200 (237)
+.|.|. ....+..+-+|..||+++|+|.. .+.....+|-+..+.+.+||
T Consensus 360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 666553 12234455556666666666541 22333444555555555554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=2.1e-12 Score=100.73 Aligned_cols=133 Identities=31% Similarity=0.360 Sum_probs=108.4
Q ss_pred CCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCcccc
Q 038699 43 NLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDL 122 (237)
Q Consensus 43 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 122 (237)
....|+++++++|.|+ .+..+..-+|+++.|+++.|.+... +.+..+++|++|++++|.++ ....+-..+-+++.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 3457899999999998 7788888899999999999999843 34888999999999999987 444556677888888
Q ss_pred ccCcCcccccccChhhcCCCCCCeEeCcCCcCcC-ccCccccCCCCCCEEEcCCCcCcCCC
Q 038699 123 QDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG-EIPASLSSMLSLVAVNLSYNNLEGPL 182 (237)
Q Consensus 123 ~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~ 182 (237)
.++.|.+.+. .-++.+-+|..||+++|+|.. .....++.+|.|+++.+.+|++.+.+
T Consensus 358 -~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 358 -KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred -ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 9999998632 335677889999999999975 23467889999999999999998433
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.07 E-value=1.4e-10 Score=70.81 Aligned_cols=59 Identities=41% Similarity=0.549 Sum_probs=30.2
Q ss_pred CCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 22 QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++|++++|++....+..|..+++|++|++++|.++...++.|..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555553334445555555555555555554444455555555555555543
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4e-11 Score=97.64 Aligned_cols=160 Identities=28% Similarity=0.278 Sum_probs=78.6
Q ss_pred CCCCCCcEEEccCCcCCCc--cCccccCCCCCCEEeccCCcccccCccc--ccCCCCCCEEEccCCcCcCc-ccccccCC
Q 038699 18 GSLSQLVELHLSSNQLSGE--IPAHIGNLTELSTLSLNGNNISGQIPEE--IGGLLNLDSLDLSMNRLSGP-IPNQIGEL 92 (237)
Q Consensus 18 ~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~i~~~-~~~~~~~l 92 (237)
..|++++.|+|+.|-+..- +......+|+|+.|+++.|.+. .+.+. -..++.|+.|.++.|++... +......+
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~-~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS-NFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc-CCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 4455666666666544421 1222245556666666666554 11111 11345555666666655421 11122345
Q ss_pred CCCCEEEccCCcccccCCccccCccCccccccCcCcccccccC-hhhcCCCCCCeEeCcCCcCcC-ccCcc-----ccCC
Q 038699 93 RDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP-AQLGKLTRLQSLNLSHNNLSG-EIPAS-----LSSM 165 (237)
Q Consensus 93 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~-~~~~~-----~~~~ 165 (237)
|+|+.|.+..|.....-......+..|+.| ++++|++.+... .....++.|+.|+++.+++++ ..|+. ...+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~L-dLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQEL-DLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhc-cccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 566666666653221222233344556666 666666553321 223455666666666666654 12322 2345
Q ss_pred CCCCEEEcCCCcCc
Q 038699 166 LSLVAVNLSYNNLE 179 (237)
Q Consensus 166 ~~L~~L~l~~n~l~ 179 (237)
++|++|++..|++.
T Consensus 301 ~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 301 PKLEYLNISENNIR 314 (505)
T ss_pred ccceeeecccCccc
Confidence 66777777777665
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=2.3e-10 Score=69.82 Aligned_cols=61 Identities=39% Similarity=0.621 Sum_probs=48.7
Q ss_pred CCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcc
Q 038699 45 TELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL 105 (237)
Q Consensus 45 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 105 (237)
|+|++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888866667888888888888888888866667788888888888888764
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=1.6e-11 Score=97.33 Aligned_cols=184 Identities=21% Similarity=0.185 Sum_probs=108.2
Q ss_pred cCCCCCCcEEEccCCcCCCccCccc----cCCCCCCEEeccCCcccccCc-------------ccccCCCCCCEEEccCC
Q 038699 17 IGSLSQLVELHLSSNQLSGEIPAHI----GNLTELSTLSLNGNNISGQIP-------------EEIGGLLNLDSLDLSMN 79 (237)
Q Consensus 17 ~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~~n 79 (237)
+..+++|+.++|++|-+....+..| ..+..|++|.|.+|.+..... ...+.-+.|+.+...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 3456678888888887764433333 456777888888877652111 11233457777777777
Q ss_pred cCcCc----ccccccCCCCCCEEEccCCccccc----CCccccCccCccccccCcCccccccc----ChhhcCCCCCCeE
Q 038699 80 RLSGP----IPNQIGELRDLRILNLSQNNLIGT----IPFQIGNLVGLQDLQDLSYNSLTGEI----PAQLGKLTRLQSL 147 (237)
Q Consensus 80 ~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~l~~n~~~~~~----~~~~~~~~~L~~L 147 (237)
.+... +...++..+.|+.+.+.+|.|... ....+.++++|+.| ++++|.++... ..+++.+++|+.+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevL-dl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVL-DLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceee-ecccchhhhHHHHHHHHHhcccchheee
Confidence 76532 233456667777777777776422 23456677777777 77777765322 2345566777777
Q ss_pred eCcCCcCcCccCccc----c-CCCCCCEEEcCCCcCcCCC-----CCCCccCCCccchhccCCc
Q 038699 148 NLSHNNLSGEIPASL----S-SMLSLVAVNLSYNNLEGPL-----PDGSVFSSSQSSAFTNNKD 201 (237)
Q Consensus 148 ~l~~n~l~~~~~~~~----~-~~~~L~~L~l~~n~l~~~~-----~~~~~~~~l~~~~l~~n~~ 201 (237)
++++|.+......+| . ..++|+.|.+++|.++..- -.....+.+..+.+++|..
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 777777654322222 1 2567777777777775211 0112245566666666643
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.5e-11 Score=97.93 Aligned_cols=178 Identities=28% Similarity=0.323 Sum_probs=128.4
Q ss_pred EEecCCcCCCCCC--cccCCCCCCcEEEccCCcCCCccCcc-ccCCCCCCEEeccCCccccc-CcccccCCCCCCEEEcc
Q 038699 2 LGLAGNSIGGKIP--AEIGSLSQLVELHLSSNQLSGEIPAH-IGNLTELSTLSLNGNNISGQ-IPEEIGGLLNLDSLDLS 77 (237)
Q Consensus 2 L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~ 77 (237)
|||++|-+....+ .-...+++|+.|+++.|++.-..... -..+++|+.|.++.|.++.. +-.....+|+|+.|++.
T Consensus 151 LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~ 230 (505)
T KOG3207|consen 151 LDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLE 230 (505)
T ss_pred ecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhh
Confidence 6777776664333 22357899999999999887221111 12568999999999998832 22234578999999999
Q ss_pred CCcCcCcccccccCCCCCCEEEccCCcccccC-CccccCccCccccccCcCcccccccChh------hcCCCCCCeEeCc
Q 038699 78 MNRLSGPIPNQIGELRDLRILNLSQNNLIGTI-PFQIGNLVGLQDLQDLSYNSLTGEIPAQ------LGKLTRLQSLNLS 150 (237)
Q Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~~l~~n~~~~~~~~~------~~~~~~L~~L~l~ 150 (237)
.|............++.|+.|+|++|.+.... -.....++.|+.| +++.+.+....... ...+++|+.|++.
T Consensus 231 ~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L-nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 231 ANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL-NLSSTGIASIAEPDVESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred cccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh-hccccCcchhcCCCccchhhhcccccceeeecc
Confidence 99533243444567889999999999986432 1457788999999 99999987543222 3557899999999
Q ss_pred CCcCcCc-cCccccCCCCCCEEEcCCCcCcC
Q 038699 151 HNNLSGE-IPASLSSMLSLVAVNLSYNNLEG 180 (237)
Q Consensus 151 ~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~ 180 (237)
.|+|.+. ....+..+++|+.|.+..|.++.
T Consensus 310 ~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 310 ENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cCccccccccchhhccchhhhhhcccccccc
Confidence 9999642 23456667888999999999874
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.95 E-value=1.1e-10 Score=98.74 Aligned_cols=165 Identities=31% Similarity=0.415 Sum_probs=107.5
Q ss_pred ecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcC
Q 038699 4 LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSG 83 (237)
Q Consensus 4 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 83 (237)
++.|.+.. .-..+..+.+++.+++.+|.|.. +...+..+++|++|++++|.|+.. ..+..++.|+.|++.+|.|..
T Consensus 79 l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 79 LRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD 154 (414)
T ss_pred cchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchh
Confidence 45555553 23346677888889999998884 333367788899999999988754 445677778899999998874
Q ss_pred cccccccCCCCCCEEEccCCcccccCC-ccccCccCccccccCcCcccccccChhhcCCCC-------------------
Q 038699 84 PIPNQIGELRDLRILNLSQNNLIGTIP-FQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTR------------------- 143 (237)
Q Consensus 84 ~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~------------------- 143 (237)
. ..+..++.|+.+++++|.+....+ . ...+..++.+ .+.+|.+..... +..+..
T Consensus 155 ~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l-~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~l~~ 228 (414)
T KOG0531|consen 155 I--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEEL-DLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEGLNE 228 (414)
T ss_pred c--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHH-hccCCchhcccc--hHHHHHHHHhhcccccceeccCccc
Confidence 3 345668888889999988875544 2 4666777777 777777653211 111111
Q ss_pred -----CCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCc
Q 038699 144 -----LQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 144 -----L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 179 (237)
|+.+++++|.+. ..+..+..+..+..|++..|++.
T Consensus 229 ~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 229 LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred chhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 455666666655 22234445566666666666665
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=2.7e-10 Score=96.24 Aligned_cols=193 Identities=30% Similarity=0.299 Sum_probs=131.1
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++.+|.|+++.. .+..+++|++|++++|.|++..+ +..++.|+.|++.+|.+... ..+..++.|+.+++++|.
T Consensus 99 ~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 99 ALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNR 173 (414)
T ss_pred eeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCcch
Confidence 47888999986544 26678999999999999995543 56777899999999999743 456668999999999999
Q ss_pred CcCccccc-ccCCCCCCEEEccCCcccccC--------------Ccc------ccCccC--ccccccCcCcccccccChh
Q 038699 81 LSGPIPNQ-IGELRDLRILNLSQNNLIGTI--------------PFQ------IGNLVG--LQDLQDLSYNSLTGEIPAQ 137 (237)
Q Consensus 81 i~~~~~~~-~~~l~~L~~L~l~~n~~~~~~--------------~~~------~~~l~~--L~~L~~l~~n~~~~~~~~~ 137 (237)
+... ... ...+.+++.+.+..|.+.... ... +..... |+.+ ++.+|.+.. .+..
T Consensus 174 i~~i-e~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l-~l~~n~i~~-~~~~ 250 (414)
T KOG0531|consen 174 IVDI-ENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLREL-YLSGNRISR-SPEG 250 (414)
T ss_pred hhhh-hhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHH-hcccCcccc-cccc
Confidence 8843 221 467777887777777654210 011 111122 6777 888888873 3244
Q ss_pred hcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCC---CCC--CCccCCCccchhccCCccc
Q 038699 138 LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP---LPD--GSVFSSSQSSAFTNNKDLC 203 (237)
Q Consensus 138 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~--~~~~~~l~~~~l~~n~~l~ 203 (237)
+..+..+..+++.+|.+... ..+...+.+..+....|++... ... ....+.+....+.+|+.-.
T Consensus 251 ~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 251 LENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 56678899999999988632 2234556677777778877622 111 3445666677777775444
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.84 E-value=4.4e-10 Score=89.25 Aligned_cols=137 Identities=22% Similarity=0.222 Sum_probs=63.5
Q ss_pred cCCCCCCEEeccCCcccccCcccc----cCCCCCCEEEccCCcCcCcc-------------cccccCCCCCCEEEccCCc
Q 038699 42 GNLTELSTLSLNGNNISGQIPEEI----GGLLNLDSLDLSMNRLSGPI-------------PNQIGELRDLRILNLSQNN 104 (237)
Q Consensus 42 ~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~i~~~~-------------~~~~~~l~~L~~L~l~~n~ 104 (237)
..+++|++++|+.|.+....+..| ..+..|++|++.+|.+...- ......-+.|+.+...+|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 344555566666555543333222 23455555555555554110 0112223455555555555
Q ss_pred cccc----CCccccCccCccccccCcCccccccc----ChhhcCCCCCCeEeCcCCcCcC----ccCccccCCCCCCEEE
Q 038699 105 LIGT----IPFQIGNLVGLQDLQDLSYNSLTGEI----PAQLGKLTRLQSLNLSHNNLSG----EIPASLSSMLSLVAVN 172 (237)
Q Consensus 105 ~~~~----~~~~~~~l~~L~~L~~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~ 172 (237)
+... ....+...+.|+.+ .+..|.|.... ...|.++++|+.||+.+|.++. .+...+..+++|++|+
T Consensus 169 len~ga~~~A~~~~~~~~leev-r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEV-RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred cccccHHHHHHHHHhccccceE-EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 5321 12234444555555 55555543211 1234555556666665555542 1223344455555555
Q ss_pred cCCCcCc
Q 038699 173 LSYNNLE 179 (237)
Q Consensus 173 l~~n~l~ 179 (237)
+++|-+.
T Consensus 248 l~dcll~ 254 (382)
T KOG1909|consen 248 LGDCLLE 254 (382)
T ss_pred ccccccc
Confidence 5555554
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.76 E-value=3.6e-11 Score=103.60 Aligned_cols=127 Identities=32% Similarity=0.364 Sum_probs=71.4
Q ss_pred CCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeC
Q 038699 70 NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNL 149 (237)
Q Consensus 70 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l 149 (237)
+|...++++|.+. .+...++-++.|+.|+|++|++++. +.+..+++|+.| |++.|.++ .+|..-..-.+|..|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhL-DlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHL-DLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhccccccc-ccccchhc-cccccchhhhhheeeee
Confidence 4445555566555 4445555566666666666666533 256666666666 66666665 33322222234666666
Q ss_pred cCCcCcCccCccccCCCCCCEEEcCCCcCcC--CCCCCCccCCCccchhccCCccc
Q 038699 150 SHNNLSGEIPASLSSMLSLVAVNLSYNNLEG--PLPDGSVFSSSQSSAFTNNKDLC 203 (237)
Q Consensus 150 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~l~~~~l~~n~~l~ 203 (237)
++|.++ . ...+.++.+|+.||+++|-+.+ ..-....+..+..+++.|||..|
T Consensus 240 rnN~l~-t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNNALT-T-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cccHHH-h-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 666665 2 2234566666777777776652 12222344556666667776555
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.59 E-value=2.3e-08 Score=91.00 Aligned_cols=100 Identities=33% Similarity=0.443 Sum_probs=46.5
Q ss_pred CCcEEEccCCc--CCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEE
Q 038699 22 QLVELHLSSNQ--LSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILN 99 (237)
Q Consensus 22 ~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 99 (237)
.|+.|-+.+|. +.......|..++.|+.|++++|.-.+.+|+.++.+-+|++|+++++.+. .+|..+.++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 45555555443 23222223444555555555544333345555555555555555555555 4455555555555555
Q ss_pred ccCCcccccCCccccCccCcccc
Q 038699 100 LSQNNLIGTIPFQIGNLVGLQDL 122 (237)
Q Consensus 100 l~~n~~~~~~~~~~~~l~~L~~L 122 (237)
+..+......+.....+.+|+.|
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred cccccccccccchhhhcccccEE
Confidence 55444332333333334444444
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.54 E-value=2.5e-08 Score=90.76 Aligned_cols=174 Identities=28% Similarity=0.358 Sum_probs=110.3
Q ss_pred EecCCc--CCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 3 GLAGNS--IGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 3 ~l~~n~--~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
-+.+|. +.......|..++.|+.|+|++|.-.+.+|..++.+-+||+|+++.+.+. .+|..++++.+|.+|++..+.
T Consensus 551 ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 551 LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccc
Confidence 344443 33333444778899999999988766688888889999999999999988 888899999999999998887
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccc-cChhhcCCCCCC----eEeCcCCcCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGE-IPAQLGKLTRLQ----SLNLSHNNLS 155 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~-~~~~~~~~~~L~----~L~l~~n~l~ 155 (237)
....++.....+++|++|.+...... .....+..+.+|+.|..++. ..... ....+..+..|. .+.+.++...
T Consensus 630 ~l~~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls~-~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~ 707 (889)
T KOG4658|consen 630 RLESIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLSI-TISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR 707 (889)
T ss_pred ccccccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhhee-ecchhHhHhhhhhhHHHHHHhHhhhhcccccc
Confidence 66555666667899999888665422 11122333344444422221 11111 111122222222 3333333322
Q ss_pred CccCccccCCCCCCEEEcCCCcCcC
Q 038699 156 GEIPASLSSMLSLVAVNLSYNNLEG 180 (237)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~n~l~~ 180 (237)
..+..+..+.+|+.|.+.++.+..
T Consensus 708 -~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 708 -TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred -eeecccccccCcceEEEEcCCCch
Confidence 455567778899999999888863
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=8.5e-10 Score=95.34 Aligned_cols=156 Identities=31% Similarity=0.323 Sum_probs=114.0
Q ss_pred CcccCCCCCCcEEEccCCcCCCccCccccC---------------------------------CCCCCEEeccCCccccc
Q 038699 14 PAEIGSLSQLVELHLSSNQLSGEIPAHIGN---------------------------------LTELSTLSLNGNNISGQ 60 (237)
Q Consensus 14 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~---------------------------------l~~L~~L~l~~n~l~~~ 60 (237)
|-.+....+|+.|.+.++.+... ..+.. ...|...+.++|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 33456678999999999887521 01110 124555666777776 6
Q ss_pred CcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCc-cccCccCccccccCcCcccccccChhhc
Q 038699 61 IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPF-QIGNLVGLQDLQDLSYNSLTGEIPAQLG 139 (237)
Q Consensus 61 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~~l~~n~~~~~~~~~~~ 139 (237)
+..++.-++.|+.|+|+.|+++.. +.+..+++|++||+++|.+. .+|. ....+. |..| .+++|.++... .+.
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L-~lrnN~l~tL~--gie 251 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLL-NLRNNALTTLR--GIE 251 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heee-eecccHHHhhh--hHH
Confidence 777888889999999999999844 37889999999999999998 4443 333343 8888 99999987332 245
Q ss_pred CCCCCCeEeCcCCcCcCc-cCccccCCCCCCEEEcCCCcCc
Q 038699 140 KLTRLQSLNLSHNNLSGE-IPASLSSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 140 ~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~ 179 (237)
++.+|..||+++|.+.+. ....+..+..|+.|.|.||++.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 788999999999988742 1223445678899999999997
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=4.1e-08 Score=76.92 Aligned_cols=161 Identities=27% Similarity=0.276 Sum_probs=81.0
Q ss_pred CCCCCcEEEccCCcCCC--ccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCc-CcccccccCCCCC
Q 038699 19 SLSQLVELHLSSNQLSG--EIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLS-GPIPNQIGELRDL 95 (237)
Q Consensus 19 ~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L 95 (237)
.++.+++++|.+|.|.+ .+...+.++|.|+.|+++.|++...+...-..+.+|+.|-+.+..+. ......+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45667777777777662 23333456777777777777665222111124456666666666543 1222334556666
Q ss_pred CEEEccCCccccc--CCccc---------------------------cCccCccccccCcCcccccc-cChhhcCCCCCC
Q 038699 96 RILNLSQNNLIGT--IPFQI---------------------------GNLVGLQDLQDLSYNSLTGE-IPAQLGKLTRLQ 145 (237)
Q Consensus 96 ~~L~l~~n~~~~~--~~~~~---------------------------~~l~~L~~L~~l~~n~~~~~-~~~~~~~~~~L~ 145 (237)
+.++++.|.+... ..... ..++++..+ .+..|.+... ....+...+.+.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv-~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV-FVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe-eeecCcccchhhcccCCCCCcch
Confidence 6666666633210 00001 112333333 3344433321 112233345555
Q ss_pred eEeCcCCcCcCc-cCccccCCCCCCEEEcCCCcCcC
Q 038699 146 SLNLSHNNLSGE-IPASLSSMLSLVAVNLSYNNLEG 180 (237)
Q Consensus 146 ~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~ 180 (237)
.|+++.++|.+. -.+.+.++++|..|.+++|++..
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 666666666542 23455666777777777777654
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.40 E-value=2.9e-08 Score=69.17 Aligned_cols=131 Identities=22% Similarity=0.247 Sum_probs=85.7
Q ss_pred CCCEEEccCCcCcCccccc---ccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCe
Q 038699 70 NLDSLDLSMNRLSGPIPNQ---IGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQS 146 (237)
Q Consensus 70 ~L~~L~l~~n~i~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~ 146 (237)
.+..++++.|.+. .+++. +.....|+.+++++|.+.+..+..-..++..+.+ ++++|.+. .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~l-Nl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTL-NLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhh-hcchhhhh-hchHHHhhhHHhhh
Confidence 4455667777665 33333 3445566677888887764433334445577888 88888887 66766888888999
Q ss_pred EeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCC-CccchhccCCccccc
Q 038699 147 LNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSS-SQSSAFTNNKDLCGK 205 (237)
Q Consensus 147 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-l~~~~l~~n~~l~~~ 205 (237)
++++.|.+. ..|..+..+.++..|+..+|.+. .+|-....+. .-...+.++++-.+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~ 162 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDET 162 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccC
Confidence 999998887 67777777888888998888887 4544323333 334444444433333
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4e-09 Score=82.48 Aligned_cols=157 Identities=23% Similarity=0.215 Sum_probs=101.5
Q ss_pred CCCcEEEccCCcCCC-ccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCccc--ccccCCCCCCE
Q 038699 21 SQLVELHLSSNQLSG-EIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIP--NQIGELRDLRI 97 (237)
Q Consensus 21 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~ 97 (237)
..+++|+|+...|+. .+...+..+.+|+.|.+.++.+.+.+...++.-.+|+.|+++.+.-..... -.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 357888888887773 244456678888888888888887777777788888888888764321211 24567888888
Q ss_pred EEccCCccccc-CCccccCc-cCccccccCcCcccc---cccChhhcCCCCCCeEeCcCC-cCcCccCccccCCCCCCEE
Q 038699 98 LNLSQNNLIGT-IPFQIGNL-VGLQDLQDLSYNSLT---GEIPAQLGKLTRLQSLNLSHN-NLSGEIPASLSSMLSLVAV 171 (237)
Q Consensus 98 L~l~~n~~~~~-~~~~~~~l-~~L~~L~~l~~n~~~---~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L 171 (237)
|++++|..... +.-.+.+. ++|+.| +++++.-. .....-.+.+++|.+||+++| .++......|..++.|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~L-NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQL-NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhh-hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 88888866422 11122222 456667 77765421 111222356788888888877 3444444556677888888
Q ss_pred EcCCCcC
Q 038699 172 NLSYNNL 178 (237)
Q Consensus 172 ~l~~n~l 178 (237)
.++.|..
T Consensus 344 SlsRCY~ 350 (419)
T KOG2120|consen 344 SLSRCYD 350 (419)
T ss_pred ehhhhcC
Confidence 8887754
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=4.1e-09 Score=82.45 Aligned_cols=173 Identities=25% Similarity=0.187 Sum_probs=123.3
Q ss_pred CEEecCCcCCCCCCc-ccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCc-cccc-CcccccCCCCCCEEEcc
Q 038699 1 MLGLAGNSIGGKIPA-EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNN-ISGQ-IPEEIGGLLNLDSLDLS 77 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~ 77 (237)
+|||+...|+..--. -++.|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++.. ..-.+..+..|++|+++
T Consensus 189 ~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNls 268 (419)
T KOG2120|consen 189 HLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLS 268 (419)
T ss_pred HhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCch
Confidence 367777777743332 35778999999999999998888888899999999999864 3311 12345688999999999
Q ss_pred CCcCcCcccccc-c-CCCCCCEEEccCCccc---ccCCccccCccCccccccCcCcc-cccccChhhcCCCCCCeEeCcC
Q 038699 78 MNRLSGPIPNQI-G-ELRDLRILNLSQNNLI---GTIPFQIGNLVGLQDLQDLSYNS-LTGEIPAQLGKLTRLQSLNLSH 151 (237)
Q Consensus 78 ~n~i~~~~~~~~-~-~l~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~~l~~n~-~~~~~~~~~~~~~~L~~L~l~~ 151 (237)
+|.........+ . --++|+.|+++++.-. ..+..-...+++|..| |+++|. ++......|..++.|++|.++.
T Consensus 269 Wc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L-DLSD~v~l~~~~~~~~~kf~~L~~lSlsR 347 (419)
T KOG2120|consen 269 WCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL-DLSDSVMLKNDCFQEFFKFNYLQHLSLSR 347 (419)
T ss_pred HhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee-ccccccccCchHHHHHHhcchheeeehhh
Confidence 998864322211 1 1357888999887532 1122234567899999 999876 4433344577889999999999
Q ss_pred CcCcCccCc---cccCCCCCCEEEcCCC
Q 038699 152 NNLSGEIPA---SLSSMLSLVAVNLSYN 176 (237)
Q Consensus 152 n~l~~~~~~---~~~~~~~L~~L~l~~n 176 (237)
|.. ..|. .+...|+|.+||+-++
T Consensus 348 CY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 348 CYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcC--CChHHeeeeccCcceEEEEeccc
Confidence 864 3343 3556789999998775
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.35 E-value=8.2e-07 Score=65.93 Aligned_cols=105 Identities=24% Similarity=0.213 Sum_probs=50.9
Q ss_pred CCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCccccccc-ChhhcCCCCCCeEe
Q 038699 70 NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEI-PAQLGKLTRLQSLN 148 (237)
Q Consensus 70 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~-~~~~~~~~~L~~L~ 148 (237)
....+|+++|.+... ..|..++.|.+|.+++|.|+...|.--..+++|..| .+.+|.+.... -..+..+++|+.|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L-~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTL-ILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceE-EecCcchhhhhhcchhccCCccceee
Confidence 344445555544411 234444555555555555554444333334445555 55555544221 12244556666666
Q ss_pred CcCCcCcCc---cCccccCCCCCCEEEcCCCc
Q 038699 149 LSHNNLSGE---IPASLSSMLSLVAVNLSYNN 177 (237)
Q Consensus 149 l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~ 177 (237)
+-+|.++.. -...+..+|+|+.||++.-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 666655521 11234456777777766543
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.30 E-value=2.9e-08 Score=69.17 Aligned_cols=80 Identities=30% Similarity=0.450 Sum_probs=33.8
Q ss_pred CCEEeccCCcccccCccccc-CCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccC
Q 038699 47 LSTLSLNGNNISGQIPEEIG-GLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDL 125 (237)
Q Consensus 47 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l 125 (237)
|...++++|.+. .+|..|. ..+.+++|++++|.+. .+|..+..++.|+.|+++.|.+. ..|+.+..+.++..| +.
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L-ds 130 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML-DS 130 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh-cC
Confidence 333444444444 2333222 2234444444444444 33333444444444444444443 333333334444444 44
Q ss_pred cCccc
Q 038699 126 SYNSL 130 (237)
Q Consensus 126 ~~n~~ 130 (237)
.+|.+
T Consensus 131 ~~na~ 135 (177)
T KOG4579|consen 131 PENAR 135 (177)
T ss_pred CCCcc
Confidence 44443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=1.3e-07 Score=74.13 Aligned_cols=189 Identities=25% Similarity=0.247 Sum_probs=112.8
Q ss_pred CCCCcccCCCCCCcEEEccCCcCCCcc-Cccc-cCCCCCCEEeccCCccccc--CcccccCCCCCCEEEccCCcCcCccc
Q 038699 11 GKIPAEIGSLSQLVELHLSSNQLSGEI-PAHI-GNLTELSTLSLNGNNISGQ--IPEEIGGLLNLDSLDLSMNRLSGPIP 86 (237)
Q Consensus 11 ~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~ 86 (237)
+..+-.++....+..+.+.++.|-... ...| ..+..++.++|..|.+++. +...+..+|.|++|+++.|.+...+.
T Consensus 35 g~s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~ 114 (418)
T KOG2982|consen 35 GLSYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK 114 (418)
T ss_pred ccceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc
Confidence 333434444455656777777665221 1122 3567899999999998742 34456789999999999999874333
Q ss_pred ccccCCCCCCEEEccCCccccc-CCccccCccCccccccCcCcccccccCh-----------------------------
Q 038699 87 NQIGELRDLRILNLSQNNLIGT-IPFQIGNLVGLQDLQDLSYNSLTGEIPA----------------------------- 136 (237)
Q Consensus 87 ~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~~l~~n~~~~~~~~----------------------------- 136 (237)
.......+|+.|.+.+..+... ....+..+|.++.+ .++.|..+....+
T Consensus 115 ~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel-HmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~ 193 (418)
T KOG2982|consen 115 SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL-HMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNK 193 (418)
T ss_pred cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh-hhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHh
Confidence 2224567899999999877533 33456677888888 8888744321100
Q ss_pred hhcCCCCCCeEeCcCCcCcCc-cCccccCCCCCCEEEcCCCcCcC--CCCCCCccCCCccchhccCC
Q 038699 137 QLGKLTRLQSLNLSHNNLSGE-IPASLSSMLSLVAVNLSYNNLEG--PLPDGSVFSSSQSSAFTNNK 200 (237)
Q Consensus 137 ~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~l~~~~l~~n~ 200 (237)
--+.++++..+-+..|.+.+. ....+..++.+..|+|+.|+|.. .+++...|+.+..+....+|
T Consensus 194 l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 011234555555555544421 12233445566666777666652 33444556666666666654
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.29 E-value=1.3e-06 Score=64.85 Aligned_cols=123 Identities=27% Similarity=0.293 Sum_probs=86.9
Q ss_pred EEecCCcCCCCCCcccC-CCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 2 LGLAGNSIGGKIPAEIG-SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+||++..+..+.- ++ -......++|++|.+.. . +.|..++.|.+|.+.+|.|+...|..-.-+++|+.|.+.+|.
T Consensus 24 ~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 24 LDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccchhh--ccccccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 4666666664333 21 23567788999998883 2 347788999999999999996666655667889999999998
Q ss_pred CcCccc-ccccCCCCCCEEEccCCcccccC---CccccCccCccccccCcCcc
Q 038699 81 LSGPIP-NQIGELRDLRILNLSQNNLIGTI---PFQIGNLVGLQDLQDLSYNS 129 (237)
Q Consensus 81 i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~~l~~n~ 129 (237)
+..... +.+..++.|++|.+-+|.++..- -..+..+++|+.| |+..-.
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~L-DF~kVt 151 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTL-DFQKVT 151 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEe-ehhhhh
Confidence 873211 34567889999999998876331 2346677888888 776543
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.26 E-value=7.6e-08 Score=74.57 Aligned_cols=205 Identities=19% Similarity=0.205 Sum_probs=129.5
Q ss_pred EEecCCcCCCCCCccc----CCCCCCcEEEccCCcCC---Cc-------cCccccCCCCCCEEeccCCcccccCccc---
Q 038699 2 LGLAGNSIGGKIPAEI----GSLSQLVELHLSSNQLS---GE-------IPAHIGNLTELSTLSLNGNNISGQIPEE--- 64 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~----~~l~~L~~L~L~~n~i~---~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~--- 64 (237)
+|||||-|......++ .+-.+|+..++++-... +. ..+++.+||+|+.++|+.|.+....|..
T Consensus 35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d 114 (388)
T COG5238 35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGD 114 (388)
T ss_pred EeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHH
Confidence 5788888875544443 34466777777654322 11 2344567889999999999887655543
Q ss_pred -ccCCCCCCEEEccCCcCcCc----ccc---------cccCCCCCCEEEccCCcccccC----CccccCccCccccccCc
Q 038699 65 -IGGLLNLDSLDLSMNRLSGP----IPN---------QIGELRDLRILNLSQNNLIGTI----PFQIGNLVGLQDLQDLS 126 (237)
Q Consensus 65 -~~~l~~L~~L~l~~n~i~~~----~~~---------~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~~l~ 126 (237)
+.....|.+|.+++|.+... +.. ....-|.|+.+...+|++..-. ...+....+|+.+ .+.
T Consensus 115 ~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~v-ki~ 193 (388)
T COG5238 115 LISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEV-KIQ 193 (388)
T ss_pred HHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeE-Eee
Confidence 34567889999998887521 111 1234577888888888875221 1123333567777 777
Q ss_pred CcccccccCh-----hhcCCCCCCeEeCcCCcCcC----ccCccccCCCCCCEEEcCCCcCcCCCC-------CCCccCC
Q 038699 127 YNSLTGEIPA-----QLGKLTRLQSLNLSHNNLSG----EIPASLSSMLSLVAVNLSYNNLEGPLP-------DGSVFSS 190 (237)
Q Consensus 127 ~n~~~~~~~~-----~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~-------~~~~~~~ 190 (237)
.|.|...... -+.++.+|+.||++.|.++- .+..++..++.|++|.+..|-++..-. .-..+++
T Consensus 194 qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~ 273 (388)
T COG5238 194 QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPN 273 (388)
T ss_pred ecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCC
Confidence 7877643221 23467889999999998874 233455667788999998887763211 1134667
Q ss_pred CccchhccCCcccccCC
Q 038699 191 SQSSAFTNNKDLCGKVQ 207 (237)
Q Consensus 191 l~~~~l~~n~~l~~~~~ 207 (237)
+..+.+++|..--|.+.
T Consensus 274 l~~L~~~Yne~~~~~i~ 290 (388)
T COG5238 274 LMPLPGDYNERRGGIIL 290 (388)
T ss_pred ccccccchhhhcCceee
Confidence 77777777765555443
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.21 E-value=4.3e-06 Score=58.73 Aligned_cols=124 Identities=14% Similarity=0.190 Sum_probs=53.1
Q ss_pred CcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCC
Q 038699 14 PAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELR 93 (237)
Q Consensus 14 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 93 (237)
..+|.++.+|+.+.+.. .+......+|..+.+|+.+.+..+ +.......|..+++++.+.+.. .+.......|..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34567777777777764 455455666777777777777664 5444455666666677777754 33323334555566
Q ss_pred CCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCC
Q 038699 94 DLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRL 144 (237)
Q Consensus 94 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L 144 (237)
+|+.+.+..+ +.......+... +++.+ .+.. .+.......|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i-~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEI-NIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EE-E-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEE-EECC-CccEECCccccccccC
Confidence 6666666544 332333344444 55555 4443 2222334444444443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=2.8e-06 Score=47.76 Aligned_cols=37 Identities=35% Similarity=0.629 Sum_probs=28.4
Q ss_pred CCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCc
Q 038699 142 TRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 142 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 179 (237)
++|++|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46788888888888 45656788888888888888887
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=5.1e-06 Score=46.71 Aligned_cols=36 Identities=47% Similarity=0.745 Sum_probs=15.2
Q ss_pred CCcEEEccCCcCCCccCccccCCCCCCEEeccCCccc
Q 038699 22 QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNIS 58 (237)
Q Consensus 22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 58 (237)
+|++|++++|+|+ .++..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444444
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.02 E-value=2.1e-05 Score=55.25 Aligned_cols=124 Identities=16% Similarity=0.226 Sum_probs=65.0
Q ss_pred CccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCcc
Q 038699 38 PAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLV 117 (237)
Q Consensus 38 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 117 (237)
..+|..+.+|+.+.+.. .+.......|..+++|+.+.+..+ +.......|..+++++.+.+.. .+.......+..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 45677888888888875 455566677888888888888775 5534445677777888888865 33334445677778
Q ss_pred CccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCC
Q 038699 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSL 168 (237)
Q Consensus 118 ~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 168 (237)
+++.+ .+..+ +.......|.++ +++.+.+.. .+.......|.++++|
T Consensus 82 ~l~~i-~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNI-DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEE-EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccc-ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 88887 77655 444566667776 788887765 3333555566666554
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=8.5e-05 Score=61.94 Aligned_cols=136 Identities=20% Similarity=0.285 Sum_probs=81.5
Q ss_pred CCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC-cCcCcccccccCCCCCC
Q 038699 18 GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN-RLSGPIPNQIGELRDLR 96 (237)
Q Consensus 18 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~ 96 (237)
..+.+++.|++++|.++ .+|. -..+|+.|.+++|.-...+|+.+. ++|+.|++++| .+. .+|. .|+
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVR 115 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccc
Confidence 34678889999988777 4552 224689999987544336665442 57899999887 443 3443 467
Q ss_pred EEEccCCcccccCCccccCc-cCccccccCcCcc-cc-cccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEc
Q 038699 97 ILNLSQNNLIGTIPFQIGNL-VGLQDLQDLSYNS-LT-GEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNL 173 (237)
Q Consensus 97 ~L~l~~n~~~~~~~~~~~~l-~~L~~L~~l~~n~-~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 173 (237)
.|++..+... . +..+ ++|+.| .+..+. .. ...+.. -.++|+.|++++|... ..|..+. .+|+.|++
T Consensus 116 ~L~L~~n~~~-~----L~~LPssLk~L-~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATD-S----IKNVPNGLTSL-SINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCc-c----cccCcchHhhe-eccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 7777665432 1 1122 245566 554322 11 011111 1367999999988765 4444332 68889998
Q ss_pred CCCc
Q 038699 174 SYNN 177 (237)
Q Consensus 174 ~~n~ 177 (237)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 8763
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=1.1e-05 Score=72.00 Aligned_cols=133 Identities=19% Similarity=0.194 Sum_probs=86.3
Q ss_pred CCCCEEeccCCcccc--cCcccccCCCCCCEEEccCCcCc-CcccccccCCCCCCEEEccCCcccccCCccccCccCccc
Q 038699 45 TELSTLSLNGNNISG--QIPEEIGGLLNLDSLDLSMNRLS-GPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQD 121 (237)
Q Consensus 45 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 121 (237)
.+|++|++++...-. .....-.-+|+|+.|.+.+-.+. +.+.....++++|..||++++.++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 478888887743221 11122235788888888876654 22344566788899999988888643 56778888888
Q ss_pred cccCcCccccc-ccChhhcCCCCCCeEeCcCCcCcCcc------CccccCCCCCCEEEcCCCcCcC
Q 038699 122 LQDLSYNSLTG-EIPAQLGKLTRLQSLNLSHNNLSGEI------PASLSSMLSLVAVNLSYNNLEG 180 (237)
Q Consensus 122 L~~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~~~~L~~L~l~~n~l~~ 180 (237)
| .+.+=.+.. ..-..+..+.+|+.||+|.....+.. .+....+|.|+.||.++..+..
T Consensus 200 L-~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 L-SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred H-hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7 666655442 12234557889999999876544211 1223347899999999877763
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=9.9e-06 Score=72.36 Aligned_cols=149 Identities=24% Similarity=0.309 Sum_probs=95.3
Q ss_pred CCCcEEEccCCcCCCc-cCccc-cCCCCCCEEeccCCcccc-cCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCE
Q 038699 21 SQLVELHLSSNQLSGE-IPAHI-GNLTELSTLSLNGNNISG-QIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRI 97 (237)
Q Consensus 21 ~~L~~L~L~~n~i~~~-~~~~~-~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 97 (237)
.+|++|++++...... .+..+ ..+|.|+.|.+.+-.+.. .+.....++|+|..||++++++... ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5688888888654422 22222 357899999998866542 2234456788999999999988844 56788888888
Q ss_pred EEccCCcccc-cCCccccCccCccccccCcCccccccc------ChhhcCCCCCCeEeCcCCcCcCccCccc-cCCCCCC
Q 038699 98 LNLSQNNLIG-TIPFQIGNLVGLQDLQDLSYNSLTGEI------PAQLGKLTRLQSLNLSHNNLSGEIPASL-SSMLSLV 169 (237)
Q Consensus 98 L~l~~n~~~~-~~~~~~~~l~~L~~L~~l~~n~~~~~~------~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~ 169 (237)
|.+.+=.+.. ..-..+..+++|+.| |++........ -+-...+|+|+.||.+++.+.....+.+ ..-++|+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vL-DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVL-DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCee-eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 8877644432 112356678888888 88876543211 1123457899999999988765433322 2234444
Q ss_pred EEE
Q 038699 170 AVN 172 (237)
Q Consensus 170 ~L~ 172 (237)
.+.
T Consensus 279 ~i~ 281 (699)
T KOG3665|consen 279 QIA 281 (699)
T ss_pred hhh
Confidence 443
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.61 E-value=2.1e-05 Score=61.33 Aligned_cols=166 Identities=23% Similarity=0.235 Sum_probs=111.4
Q ss_pred cccCCCCCCcEEEccCCcCCCccCcc----ccCCCCCCEEeccCCcccccCcc-------------cccCCCCCCEEEcc
Q 038699 15 AEIGSLSQLVELHLSSNQLSGEIPAH----IGNLTELSTLSLNGNNISGQIPE-------------EIGGLLNLDSLDLS 77 (237)
Q Consensus 15 ~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~l~ 77 (237)
+++..|++++..+|++|-+....|.. ++.-..|.+|.+++|.+....-. ....-|.|+...+.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 34567899999999999888655543 35567899999999987622111 12345789999999
Q ss_pred CCcCcCcccc-----cccCCCCCCEEEccCCcccccC-----CccccCccCccccccCcCccccccc----ChhhcCCCC
Q 038699 78 MNRLSGPIPN-----QIGELRDLRILNLSQNNLIGTI-----PFQIGNLVGLQDLQDLSYNSLTGEI----PAQLGKLTR 143 (237)
Q Consensus 78 ~n~i~~~~~~-----~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~~l~~n~~~~~~----~~~~~~~~~ 143 (237)
.|++. ..+. .+.....|+.+.+.+|.|.... -..+..+.+|+.| ++.+|.++-.. ..++..++.
T Consensus 166 rNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevL-DlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 166 RNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVL-DLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred cchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceee-eccccchhhhhHHHHHHHhcccch
Confidence 99886 2222 2334467888888888876331 1234456788888 99998876322 344566778
Q ss_pred CCeEeCcCCcCcCccCc----ccc--CCCCCCEEEcCCCcCcCCC
Q 038699 144 LQSLNLSHNNLSGEIPA----SLS--SMLSLVAVNLSYNNLEGPL 182 (237)
Q Consensus 144 L~~L~l~~n~l~~~~~~----~~~--~~~~L~~L~l~~n~l~~~~ 182 (237)
|+.|.+..|-+...... .|. ..++|..|-..+|...+.+
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence 88898888877543222 221 2478888888888876433
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.49 E-value=0.00099 Score=55.74 Aligned_cols=129 Identities=23% Similarity=0.273 Sum_probs=78.3
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCC-cccccCcccccCCCCCCEEEccCC
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGN-NISGQIPEEIGGLLNLDSLDLSMN 79 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 79 (237)
.|++++|.++.. | .+ -.+|++|.+.++.-...+|+.+. ++|+.|.+++| .+. .+|. +|+.|++..+
T Consensus 56 ~L~Is~c~L~sL-P-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n 122 (426)
T PRK15386 56 RLYIKDCDIESL-P-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGS 122 (426)
T ss_pred EEEeCCCCCccc-C-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCC
Confidence 378999988744 4 22 24699999988644446665443 58999999998 554 4443 5777887766
Q ss_pred cCcCcccccccCC-CCCCEEEccCCccc--ccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCc
Q 038699 80 RLSGPIPNQIGEL-RDLRILNLSQNNLI--GTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNN 153 (237)
Q Consensus 80 ~i~~~~~~~~~~l-~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 153 (237)
... . +..+ ++|+.|.+.++... ...+. .-.++|+.| .+++|... ..|..+. .+|+.|+++.+.
T Consensus 123 ~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L-~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 123 ATD-S----IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTL-SLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCc-c----cccCcchHhheecccccccccccccc--ccCCcccEE-EecCCCcc-cCccccc--ccCcEEEecccc
Confidence 543 1 2223 24666766443211 01111 112578888 88887755 3443332 578888887763
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.48 E-value=9.2e-05 Score=57.26 Aligned_cols=88 Identities=30% Similarity=0.346 Sum_probs=46.0
Q ss_pred ccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC--cCcCcccccccCCCCCCEEEccCCccccc-CCccccCcc
Q 038699 41 IGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN--RLSGPIPNQIGELRDLRILNLSQNNLIGT-IPFQIGNLV 117 (237)
Q Consensus 41 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~ 117 (237)
......|+.+.+.+..++.. ..+..+++|++|.++.| .+...+.-....+++|+++++++|++... .-..+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 33445566666666655522 33445666677777666 44333333334456677777777666421 112234445
Q ss_pred CccccccCcCcccc
Q 038699 118 GLQDLQDLSYNSLT 131 (237)
Q Consensus 118 ~L~~L~~l~~n~~~ 131 (237)
+|..| ++.+|..+
T Consensus 117 nL~~L-dl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSL-DLFNCSVT 129 (260)
T ss_pred chhhh-hcccCCcc
Confidence 55555 66665544
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=8.5e-06 Score=63.65 Aligned_cols=100 Identities=23% Similarity=0.224 Sum_probs=64.9
Q ss_pred CCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccC-hhhcCCCCCCe
Q 038699 68 LLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP-AQLGKLTRLQS 146 (237)
Q Consensus 68 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~-~~~~~~~~L~~ 146 (237)
+.+.+.|++.++.+.++ .....++.|+.|.|+-|.|+.. ..+..+++|++| +|+.|.|.+... ..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkEl-YLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKEL-YLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHH-HHHhcccccHHHHHHHhcCchhhh
Confidence 44566677777777644 3456777777777777777633 346677777777 788777764322 34667788888
Q ss_pred EeCcCCcCcCccC-----ccccCCCCCCEEE
Q 038699 147 LNLSHNNLSGEIP-----ASLSSMLSLVAVN 172 (237)
Q Consensus 147 L~l~~n~l~~~~~-----~~~~~~~~L~~L~ 172 (237)
|+|..|.-.+.-+ ..+..+|+|++||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8887775443222 2344567777776
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.25 E-value=9.4e-05 Score=57.21 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=64.7
Q ss_pred cccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCC--cccccCCccccCccCccccccCcCcccccc-cChhhcC
Q 038699 64 EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQN--NLIGTIPFQIGNLVGLQDLQDLSYNSLTGE-IPAQLGK 140 (237)
Q Consensus 64 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~-~~~~~~~ 140 (237)
....+..|+.|.+.+..++.. ..+-.+++|+.|.++.| .+.+.++.....+++|+.+ ++++|++... .-..+..
T Consensus 38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l-~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVL-NLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred ccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEE-eecCCccccccccchhhh
Confidence 334456677777766666522 23556778888888888 5554444455556888888 8888887631 1122445
Q ss_pred CCCCCeEeCcCCcCcCc---cCccccCCCCCCEEEc
Q 038699 141 LTRLQSLNLSHNNLSGE---IPASLSSMLSLVAVNL 173 (237)
Q Consensus 141 ~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l 173 (237)
+.+|..|++.+|..+.. --..|.-+++|.+||-
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 56677788877765531 1123455666666653
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=5.9e-05 Score=59.08 Aligned_cols=98 Identities=24% Similarity=0.235 Sum_probs=63.8
Q ss_pred CCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCccc--ccccCCCCCCE
Q 038699 20 LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIP--NQIGELRDLRI 97 (237)
Q Consensus 20 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~ 97 (237)
+.+++.|++-++.+.++. ....|+.|+.|.|+-|+|+.. ..+..+++|++|+|..|.|.+ +. ..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence 445677777787777432 235778888888888888744 335677888888888888773 22 24567778888
Q ss_pred EEccCCcccccCCc-----cccCccCcccc
Q 038699 98 LNLSQNNLIGTIPF-----QIGNLVGLQDL 122 (237)
Q Consensus 98 L~l~~n~~~~~~~~-----~~~~l~~L~~L 122 (237)
|-|..|.-.+..+. .+..+++|++|
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhc
Confidence 87777765433221 23445566555
No 67
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.04 E-value=2.2e-05 Score=67.22 Aligned_cols=177 Identities=28% Similarity=0.329 Sum_probs=102.7
Q ss_pred EEecCCcCCCCCC----cccCCCCCCcEEEccCCcCCCcc----CccccCC-CCCCEEeccCCccccc----CcccccCC
Q 038699 2 LGLAGNSIGGKIP----AEIGSLSQLVELHLSSNQLSGEI----PAHIGNL-TELSTLSLNGNNISGQ----IPEEIGGL 68 (237)
Q Consensus 2 L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~l 68 (237)
|+|.+|++..... .++..+..|+.|++++|.+.+.. -..+... ..+++|.+..|.++.. +...+...
T Consensus 92 L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~ 171 (478)
T KOG4308|consen 92 LSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKN 171 (478)
T ss_pred hhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcc
Confidence 4556666664333 23445677777788877776331 1222222 4566667766766633 23444456
Q ss_pred CCCCEEEccCCcCcC----ccccccc----CCCCCCEEEccCCccccc----CCccccCccC-ccccccCcCcccccccC
Q 038699 69 LNLDSLDLSMNRLSG----PIPNQIG----ELRDLRILNLSQNNLIGT----IPFQIGNLVG-LQDLQDLSYNSLTGEIP 135 (237)
Q Consensus 69 ~~L~~L~l~~n~i~~----~~~~~~~----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~-L~~L~~l~~n~~~~~~~ 135 (237)
..++.++++.|.+.. .++..+. ...++++|.+.+|.++.. ....+...+. +..+ ++..|++.+...
T Consensus 172 ~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el-~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 172 EHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLREL-DLASNKLGDVGV 250 (478)
T ss_pred cchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHH-HHHhcCcchHHH
Confidence 677777777777631 1222222 466777788887776522 1223444444 5566 777777764322
Q ss_pred ----hhhcCC-CCCCeEeCcCCcCcCc----cCccccCCCCCCEEEcCCCcCc
Q 038699 136 ----AQLGKL-TRLQSLNLSHNNLSGE----IPASLSSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 136 ----~~~~~~-~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~ 179 (237)
..+..+ ++++.++++.|.|++. ....+..++.++++.+++|++.
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 223334 5678888888888753 3344556678888888888876
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.38 E-value=0.0091 Score=27.87 Aligned_cols=21 Identities=43% Similarity=0.619 Sum_probs=14.8
Q ss_pred CCcEEEccCCcCCCccCccccC
Q 038699 22 QLVELHLSSNQLSGEIPAHIGN 43 (237)
Q Consensus 22 ~L~~L~L~~n~i~~~~~~~~~~ 43 (237)
+|++|++++|.++ .+|..|.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4778888888888 56655554
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.42 E-value=0.026 Score=24.50 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=6.2
Q ss_pred CCCEEEcCCCcCc
Q 038699 167 SLVAVNLSYNNLE 179 (237)
Q Consensus 167 ~L~~L~l~~n~l~ 179 (237)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666654
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.96 E-value=0.0013 Score=50.41 Aligned_cols=87 Identities=22% Similarity=0.244 Sum_probs=62.7
Q ss_pred cCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCC
Q 038699 17 IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLR 96 (237)
Q Consensus 17 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 96 (237)
+......+.|+++.|++. .....|+.+..+..|+++.|.+. ..|..++.+..+..+++..|... ..|..+...++++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 445566777888877776 44445666677777788887777 67777777777777777777766 6677777888888
Q ss_pred EEEccCCccc
Q 038699 97 ILNLSQNNLI 106 (237)
Q Consensus 97 ~L~l~~n~~~ 106 (237)
+++.-.|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8877777654
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.24 E-value=0.03 Score=48.12 Aligned_cols=89 Identities=24% Similarity=0.176 Sum_probs=53.5
Q ss_pred cCCCCCCcEEEccCC-cCCCcc----CccccCCCCCCEEeccCCc-ccccCccccc-CCCCCCEEEccCCc-CcCc-ccc
Q 038699 17 IGSLSQLVELHLSSN-QLSGEI----PAHIGNLTELSTLSLNGNN-ISGQIPEEIG-GLLNLDSLDLSMNR-LSGP-IPN 87 (237)
Q Consensus 17 ~~~l~~L~~L~L~~n-~i~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~-i~~~-~~~ 87 (237)
...++.|+.|+++++ ...... ......+++|+.|+++.+. +++..-..+. .+++|+.|.+..+. +++. +..
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 456788888888763 111111 1223456788888888877 5533333333 26788888877666 4422 122
Q ss_pred cccCCCCCCEEEccCCcc
Q 038699 88 QIGELRDLRILNLSQNNL 105 (237)
Q Consensus 88 ~~~~l~~L~~L~l~~n~~ 105 (237)
....++.|++|+++++..
T Consensus 290 i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHhcCcccEEeeecCcc
Confidence 334577788888887754
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.69 E-value=0.0013 Score=56.53 Aligned_cols=178 Identities=24% Similarity=0.302 Sum_probs=111.1
Q ss_pred CcEEEccCCcCCCc----cCccccCCCCCCEEeccCCcccccCcc----cccCC-CCCCEEEccCCcCcCc----ccccc
Q 038699 23 LVELHLSSNQLSGE----IPAHIGNLTELSTLSLNGNNISGQIPE----EIGGL-LNLDSLDLSMNRLSGP----IPNQI 89 (237)
Q Consensus 23 L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l-~~L~~L~l~~n~i~~~----~~~~~ 89 (237)
+..+.|.+|.+.+. +..++...+.|+.|+++.|.+.+.... .+... ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67788888888743 345566778888899999888743222 22222 5677788888877643 33445
Q ss_pred cCCCCCCEEEccCCcccc----cCCcccc----CccCccccccCcCccccccc----ChhhcCCCC-CCeEeCcCCcCcC
Q 038699 90 GELRDLRILNLSQNNLIG----TIPFQIG----NLVGLQDLQDLSYNSLTGEI----PAQLGKLTR-LQSLNLSHNNLSG 156 (237)
Q Consensus 90 ~~l~~L~~L~l~~n~~~~----~~~~~~~----~l~~L~~L~~l~~n~~~~~~----~~~~~~~~~-L~~L~l~~n~l~~ 156 (237)
.....++.++++.|.+.. ..+..+. ...++++| .+..|.++... ...+...+. +..+++..|.+.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L-~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETL-KLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHH-hhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 567788888888887731 1223333 36678888 88888776322 123444454 6668888888875
Q ss_pred c----cCccccCC-CCCCEEEcCCCcCcCCCCCC-----CccCCCccchhccCCc
Q 038699 157 E----IPASLSSM-LSLVAVNLSYNNLEGPLPDG-----SVFSSSQSSAFTNNKD 201 (237)
Q Consensus 157 ~----~~~~~~~~-~~L~~L~l~~n~l~~~~~~~-----~~~~~l~~~~l~~n~~ 201 (237)
. ....+..+ ..+++++++.|.++..-... ..-+.+..+.+++|+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 3 23344444 67789999999987422221 1122556666666643
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.66 E-value=0.071 Score=45.82 Aligned_cols=110 Identities=27% Similarity=0.181 Sum_probs=50.6
Q ss_pred CCCCCEEeccCCccccc--CcccccCCCCCCEEEccCC-cCcCccc----ccccCCCCCCEEEccCCc-ccccCCcccc-
Q 038699 44 LTELSTLSLNGNNISGQ--IPEEIGGLLNLDSLDLSMN-RLSGPIP----NQIGELRDLRILNLSQNN-LIGTIPFQIG- 114 (237)
Q Consensus 44 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n-~i~~~~~----~~~~~l~~L~~L~l~~n~-~~~~~~~~~~- 114 (237)
++.|+.+.+..+.-... ........+.|++|+++++ ......+ .....+++|+.++++++. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45666666655532211 2233345566666666652 1110111 122334566666666665 3332222222
Q ss_pred CccCccccccCcCcc-cccccC-hhhcCCCCCCeEeCcCCcC
Q 038699 115 NLVGLQDLQDLSYNS-LTGEIP-AQLGKLTRLQSLNLSHNNL 154 (237)
Q Consensus 115 ~l~~L~~L~~l~~n~-~~~~~~-~~~~~~~~L~~L~l~~n~l 154 (237)
.+++|+.| .+..+. +++..- .....++.|++|+++++..
T Consensus 267 ~c~~L~~L-~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETL-SLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceE-ccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 14566666 555554 332222 2233455666666666543
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.30 E-value=0.19 Score=24.18 Aligned_cols=14 Identities=64% Similarity=0.736 Sum_probs=7.0
Q ss_pred CCCcEEEccCCcCC
Q 038699 21 SQLVELHLSSNQLS 34 (237)
Q Consensus 21 ~~L~~L~L~~n~i~ 34 (237)
++|+.|+|.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555555
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.30 E-value=0.19 Score=24.18 Aligned_cols=14 Identities=64% Similarity=0.736 Sum_probs=7.0
Q ss_pred CCCcEEEccCCcCC
Q 038699 21 SQLVELHLSSNQLS 34 (237)
Q Consensus 21 ~~L~~L~L~~n~i~ 34 (237)
++|+.|+|.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555555
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.10 E-value=0.025 Score=42.51 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=40.9
Q ss_pred CCEEEccCCcccccCCccccCccCccccccCcCccc-ccccChhh-cCCCCCCeEeCcCC-cCcCccCccccCCCCCCEE
Q 038699 95 LRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSL-TGEIPAQL-GKLTRLQSLNLSHN-NLSGEIPASLSSMLSLVAV 171 (237)
Q Consensus 95 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~-~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L 171 (237)
++.++-++..|..+--+.+..++.++.| .+.+|.- .+..-+-+ ...++|+.|++++| +||+.....+..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l-~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSL-SLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhh-eeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4455555555544433444455555555 4444431 11000011 12356777777766 5665555556666667666
Q ss_pred EcCCCc
Q 038699 172 NLSYNN 177 (237)
Q Consensus 172 ~l~~n~ 177 (237)
.+.+-+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 665533
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.79 E-value=0.0083 Score=46.18 Aligned_cols=86 Identities=20% Similarity=0.196 Sum_probs=47.8
Q ss_pred cCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCC
Q 038699 66 GGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQ 145 (237)
Q Consensus 66 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~ 145 (237)
........||++.|.+. .+-..|+.++.+..|+++.|.+. ..|..+.....+..+ ++..|... ..|..+...++++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~-~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNA-ASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHH-Hhhccchh-hCCccccccCCcc
Confidence 34445556666666554 33344555566666666666654 445555555555555 55555554 4555556666666
Q ss_pred eEeCcCCcCc
Q 038699 146 SLNLSHNNLS 155 (237)
Q Consensus 146 ~L~l~~n~l~ 155 (237)
.+++..|.++
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 6666665544
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.40 E-value=0.12 Score=24.40 Aligned_cols=11 Identities=55% Similarity=0.758 Sum_probs=3.5
Q ss_pred CCEEeccCCcc
Q 038699 47 LSTLSLNGNNI 57 (237)
Q Consensus 47 L~~L~l~~n~l 57 (237)
|++|++++|.+
T Consensus 4 L~~L~l~~n~i 14 (24)
T PF13516_consen 4 LETLDLSNNQI 14 (24)
T ss_dssp -SEEE-TSSBE
T ss_pred CCEEEccCCcC
Confidence 33333333333
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.26 E-value=0.099 Score=39.41 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=37.1
Q ss_pred CCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCccc-ccc-cCCCCCCEEEccCCc-ccccCCccccCccCcccc
Q 038699 46 ELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIP-NQI-GELRDLRILNLSQNN-LIGTIPFQIGNLVGLQDL 122 (237)
Q Consensus 46 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~-~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L 122 (237)
.++.++-++..|....-+.+..+++++.|.+.++.-.+... +.+ .-.++|+.|++++|. |++.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34555555555554444555556666666665554321100 001 134566666666553 443333344455555554
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.53 E-value=1.2 Score=21.67 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=11.5
Q ss_pred CCCCEEEcCCCcCc
Q 038699 166 LSLVAVNLSYNNLE 179 (237)
Q Consensus 166 ~~L~~L~l~~n~l~ 179 (237)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 57888888888886
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.39 E-value=1.3 Score=21.83 Aligned_cols=14 Identities=43% Similarity=0.442 Sum_probs=10.9
Q ss_pred CCCCEEEcCCCcCc
Q 038699 166 LSLVAVNLSYNNLE 179 (237)
Q Consensus 166 ~~L~~L~l~~n~l~ 179 (237)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888875
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.61 E-value=1.5 Score=21.27 Aligned_cols=18 Identities=44% Similarity=0.621 Sum_probs=12.0
Q ss_pred CCCCEEEcCCCcCcCCCCC
Q 038699 166 LSLVAVNLSYNNLEGPLPD 184 (237)
Q Consensus 166 ~~L~~L~l~~n~l~~~~~~ 184 (237)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35677777777777 4444
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=76.24 E-value=1.4 Score=37.22 Aligned_cols=177 Identities=20% Similarity=0.113 Sum_probs=104.0
Q ss_pred CCCCcEEEccCCc-CCCcc-CccccCCCCCCEEeccCCcc-cccCcccc-cCCCCCCEEEccCCcCcCc-ccccc-cCCC
Q 038699 20 LSQLVELHLSSNQ-LSGEI-PAHIGNLTELSTLSLNGNNI-SGQIPEEI-GGLLNLDSLDLSMNRLSGP-IPNQI-GELR 93 (237)
Q Consensus 20 l~~L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~l~~n~i~~~-~~~~~-~~l~ 93 (237)
+..+.++++..+. +++.- ...-..+..||.|..+++.- ++..-..+ ...++|+.|.+..++-.+. -...+ .+.+
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 3445566655543 33221 12224677899999988643 22221222 3568999999998874211 11112 3567
Q ss_pred CCCEEEccCCccc--ccCCccccCccCccccccCcCccc-cccc----ChhhcCCCCCCeEeCcCCcCc-CccCccccCC
Q 038699 94 DLRILNLSQNNLI--GTIPFQIGNLVGLQDLQDLSYNSL-TGEI----PAQLGKLTRLQSLNLSHNNLS-GEIPASLSSM 165 (237)
Q Consensus 94 ~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~~l~~n~~-~~~~----~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~ 165 (237)
.|+.+++..+... +.+...-.+++.|+.+ .++.+.. ++.. ...-..+..++.+.++++..+ +..-..+..+
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l-slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVL-SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccC-ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 8888888887643 2233444567888888 8887763 3221 122234678899999998644 4455667778
Q ss_pred CCCCEEEcCCCcCcC---CCCCCCccCCCccchhc
Q 038699 166 LSLVAVNLSYNNLEG---PLPDGSVFSSSQSSAFT 197 (237)
Q Consensus 166 ~~L~~L~l~~n~l~~---~~~~~~~~~~l~~~~l~ 197 (237)
++|+.+++-.++-.. .-+.....++++...+.
T Consensus 426 ~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 426 RNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred cccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 899998888776432 12223445555555444
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=69.92 E-value=2.1 Score=36.18 Aligned_cols=134 Identities=25% Similarity=0.269 Sum_probs=80.9
Q ss_pred CCCCCcEEEccCCc-CCCccCccc-cCCCCCCEEeccCCcc-cccCcccc-cCCCCCCEEEccCCcCc--CcccccccCC
Q 038699 19 SLSQLVELHLSSNQ-LSGEIPAHI-GNLTELSTLSLNGNNI-SGQIPEEI-GGLLNLDSLDLSMNRLS--GPIPNQIGEL 92 (237)
Q Consensus 19 ~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~l~~n~i~--~~~~~~~~~l 92 (237)
.+..|+.+..+++. +++..-.++ .+.++|+.+.+..|+- ++.-...+ .+.+.|+.+++..+... +.+.+.-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45667777777653 333322233 4668888888888763 21111111 24577888888877653 1233334567
Q ss_pred CCCCEEEccCCccc-cc----CCccccCccCccccccCcCccc-ccccChhhcCCCCCCeEeCcCCc
Q 038699 93 RDLRILNLSQNNLI-GT----IPFQIGNLVGLQDLQDLSYNSL-TGEIPAQLGKLTRLQSLNLSHNN 153 (237)
Q Consensus 93 ~~L~~L~l~~n~~~-~~----~~~~~~~l~~L~~L~~l~~n~~-~~~~~~~~~~~~~L~~L~l~~n~ 153 (237)
+.|+.+.++++... +. ....-..+..+..+ .+.++.. ++.....+..+++|+.+++-+++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~l-EL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVL-ELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhcccccccccee-eecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 88888888877543 21 12223445667777 7887764 33445667778888888887764
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.58 E-value=2.5 Score=36.89 Aligned_cols=64 Identities=30% Similarity=0.340 Sum_probs=38.3
Q ss_pred CCCCCcEEEccCCcCCCc--cCccccCCCCCCEEeccCC--cccccCccccc--CCCCCCEEEccCCcCcCc
Q 038699 19 SLSQLVELHLSSNQLSGE--IPAHIGNLTELSTLSLNGN--NISGQIPEEIG--GLLNLDSLDLSMNRLSGP 84 (237)
Q Consensus 19 ~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~--~l~~L~~L~l~~n~i~~~ 84 (237)
+.+.+..+.|++|++... +..--...|+|+.|+|++| .+.. ...+. +...|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 456777788888877632 1222234578888888888 3331 11222 335677888888887643
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.95 E-value=3.3 Score=36.21 Aligned_cols=64 Identities=30% Similarity=0.251 Sum_probs=30.5
Q ss_pred cCccccccCcCcccccccC--hhhcCCCCCCeEeCcCC--cCcCc-cCccccCCCCCCEEEcCCCcCcCCC
Q 038699 117 VGLQDLQDLSYNSLTGEIP--AQLGKLTRLQSLNLSHN--NLSGE-IPASLSSMLSLVAVNLSYNNLEGPL 182 (237)
Q Consensus 117 ~~L~~L~~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n--~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~ 182 (237)
+.+..+ .+++|++..... ..-...|+|+.|+|++| .+.+. ....+ +...|++|-+.||++++..
T Consensus 218 p~i~sl-~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 218 PEILSL-SLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cceeee-ecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccccch
Confidence 445555 666666543211 11223466667777766 33211 01111 2245666667777666433
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=56.92 E-value=8.8 Score=18.22 Aligned_cols=13 Identities=23% Similarity=0.120 Sum_probs=9.7
Q ss_pred CCCCCEEEcCCCc
Q 038699 165 MLSLVAVNLSYNN 177 (237)
Q Consensus 165 ~~~L~~L~l~~n~ 177 (237)
+++|++|++++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3678888888875
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=53.18 E-value=10 Score=39.76 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=22.6
Q ss_pred cCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699 124 DLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155 (237)
Q Consensus 124 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 155 (237)
+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46677777666667777777777777777665
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=45.67 E-value=13 Score=39.10 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=28.8
Q ss_pred EecCCcCCCCCCcccCCCCCCcEEEccCCcCC
Q 038699 3 GLAGNSIGGKIPAEIGSLSQLVELHLSSNQLS 34 (237)
Q Consensus 3 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 34 (237)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999888888999999999999998775
Done!